Query 005661
Match_columns 685
No_of_seqs 658 out of 4021
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 7.8E-85 2.7E-89 729.0 46.1 435 188-624 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.8E-81 6.3E-86 705.5 41.5 433 189-625 26-469 (499)
3 4b4t_J 26S protease regulatory 100.0 1.5E-54 5.3E-59 472.0 25.2 301 122-435 82-393 (405)
4 4b4t_L 26S protease subunit RP 100.0 1.5E-54 5.1E-59 478.5 25.3 352 68-434 53-425 (437)
5 4b4t_I 26S protease regulatory 100.0 2.2E-53 7.6E-58 464.3 24.2 301 122-435 116-427 (437)
6 4b4t_H 26S protease regulatory 100.0 9.1E-53 3.1E-57 463.4 23.7 303 123-438 144-457 (467)
7 4b4t_K 26S protease regulatory 100.0 9.5E-51 3.3E-55 447.4 24.3 246 188-433 166-416 (428)
8 4b4t_M 26S protease regulatory 100.0 1.6E-50 5.3E-55 446.1 25.8 247 188-434 175-425 (434)
9 2di4_A Zinc protease, cell div 100.0 2E-49 6.7E-54 403.3 16.8 195 432-626 1-203 (238)
10 3cf2_A TER ATPase, transitiona 100.0 8.2E-46 2.8E-50 434.5 14.2 248 188-435 198-463 (806)
11 3cf2_A TER ATPase, transitiona 100.0 1.5E-44 5E-49 423.9 8.9 246 188-433 471-745 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 1.6E-38 5.5E-43 326.8 27.8 248 188-435 6-256 (257)
13 2x8a_A Nuclear valosin-contain 100.0 4E-39 1.4E-43 336.6 21.9 246 188-433 4-266 (274)
14 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.9E-38 9.8E-43 323.9 21.2 255 189-443 1-261 (262)
15 3cf0_A Transitional endoplasmi 100.0 6.4E-38 2.2E-42 331.1 21.4 245 188-432 9-282 (301)
16 3h4m_A Proteasome-activating n 100.0 1.8E-36 6.2E-41 315.3 27.0 246 188-433 11-260 (285)
17 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.4E-36 4.6E-41 324.4 24.4 224 188-414 6-233 (322)
18 1ixz_A ATP-dependent metallopr 100.0 1.8E-35 6.1E-40 303.6 26.8 241 188-428 10-253 (254)
19 3eie_A Vacuolar protein sortin 100.0 1.8E-36 6.1E-41 322.9 19.9 243 188-433 12-300 (322)
20 3hu3_A Transitional endoplasmi 100.0 3.1E-35 1.1E-39 330.4 25.3 245 189-433 199-461 (489)
21 2qp9_X Vacuolar protein sortin 100.0 1.8E-35 6E-40 319.9 22.0 243 188-433 45-333 (355)
22 1iy2_A ATP-dependent metallopr 100.0 3.6E-34 1.2E-38 298.4 27.1 240 189-428 35-277 (278)
23 2r62_A Cell division protease 100.0 7E-37 2.4E-41 315.9 4.7 248 188-435 5-257 (268)
24 2zan_A Vacuolar protein sortin 100.0 2.8E-34 9.6E-39 319.4 20.7 224 188-414 128-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 4.6E-32 1.6E-36 293.2 24.7 242 189-433 79-336 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 1.6E-32 5.6E-37 287.4 19.0 241 188-431 15-272 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 2.7E-31 9.3E-36 290.0 22.3 242 188-432 109-366 (389)
28 1ypw_A Transitional endoplasmi 100.0 8.3E-34 2.8E-38 336.5 0.1 228 188-415 471-702 (806)
29 1ypw_A Transitional endoplasmi 100.0 1.3E-30 4.5E-35 309.2 21.8 230 188-417 198-428 (806)
30 3t15_A Ribulose bisphosphate c 100.0 8.4E-31 2.9E-35 276.0 5.7 227 222-462 31-281 (293)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.1E-26 3.8E-31 258.9 0.7 202 188-406 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 1.2E-22 4.1E-27 213.1 15.2 222 195-425 32-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 3.7E-22 1.3E-26 214.5 17.5 252 189-465 39-362 (368)
34 3pfi_A Holliday junction ATP-d 99.9 1.5E-20 5.3E-25 200.0 22.8 214 189-431 24-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 5.5E-20 1.9E-24 193.9 19.6 213 189-431 7-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 3.3E-20 1.1E-24 193.7 16.0 236 194-431 15-299 (310)
37 1g41_A Heat shock protein HSLU 99.8 1E-20 3.6E-25 209.0 6.5 170 194-372 15-190 (444)
38 1d2n_A N-ethylmaleimide-sensit 99.8 2.6E-19 8.7E-24 185.3 15.4 225 193-430 32-263 (272)
39 2v1u_A Cell division control p 99.8 2.8E-18 9.5E-23 184.0 23.1 226 190-432 15-277 (387)
40 3m6a_A ATP-dependent protease 99.8 5.8E-20 2E-24 209.1 9.3 223 191-431 78-341 (543)
41 3hws_A ATP-dependent CLP prote 99.8 1.6E-18 5.5E-23 187.0 16.0 218 195-414 16-325 (363)
42 2chg_A Replication factor C sm 99.8 2.4E-17 8.3E-22 161.7 20.7 201 189-429 12-224 (226)
43 2z4s_A Chromosomal replication 99.8 1.4E-17 4.9E-22 184.8 20.4 223 188-432 99-333 (440)
44 1g8p_A Magnesium-chelatase 38 99.8 9.4E-18 3.2E-22 178.5 17.8 220 188-434 18-325 (350)
45 3u61_B DNA polymerase accessor 99.8 5.2E-18 1.8E-22 179.5 15.1 202 188-429 20-235 (324)
46 3pvs_A Replication-associated 99.7 1.1E-17 3.7E-22 186.1 16.9 204 190-431 22-244 (447)
47 1l8q_A Chromosomal replication 99.7 2.4E-17 8.3E-22 174.7 19.0 198 188-410 5-214 (324)
48 1njg_A DNA polymerase III subu 99.7 5.5E-17 1.9E-21 160.8 19.6 202 189-428 18-248 (250)
49 1jbk_A CLPB protein; beta barr 99.7 2.7E-18 9.1E-23 164.7 9.5 159 190-370 18-194 (195)
50 2r44_A Uncharacterized protein 99.7 5.1E-18 1.8E-22 180.2 12.5 213 193-434 26-300 (331)
51 2qby_B CDC6 homolog 3, cell di 99.7 2.3E-17 7.8E-22 177.6 17.6 215 192-432 18-271 (384)
52 1sxj_A Activator 1 95 kDa subu 99.7 1.9E-17 6.4E-22 187.3 16.9 222 189-430 34-273 (516)
53 1r6b_X CLPA protein; AAA+, N-t 99.7 2.8E-17 9.6E-22 193.8 18.8 221 190-432 182-434 (758)
54 2qby_A CDC6 homolog 1, cell di 99.7 1.1E-16 3.7E-21 171.3 20.4 226 189-432 15-273 (386)
55 3bos_A Putative DNA replicatio 99.7 9E-17 3.1E-21 160.7 17.8 206 189-429 23-241 (242)
56 1in4_A RUVB, holliday junction 99.7 4.9E-16 1.7E-20 166.1 24.1 213 191-432 22-251 (334)
57 1um8_A ATP-dependent CLP prote 99.7 6.5E-17 2.2E-21 175.1 15.8 233 194-428 21-362 (376)
58 4fcw_A Chaperone protein CLPB; 99.7 5.7E-17 1.9E-21 169.8 14.4 202 194-411 17-278 (311)
59 3te6_A Regulatory protein SIR3 99.7 8.2E-18 2.8E-22 178.8 7.7 160 196-377 22-214 (318)
60 3pxg_A Negative regulator of g 99.7 1E-16 3.6E-21 179.1 16.5 204 190-430 176-405 (468)
61 1fnn_A CDC6P, cell division co 99.7 6E-16 2.1E-20 166.3 21.8 222 190-432 13-275 (389)
62 1qvr_A CLPB protein; coiled co 99.7 1.9E-16 6.4E-21 189.3 18.5 203 190-414 166-395 (854)
63 1sxj_D Activator 1 41 kDa subu 99.7 2.7E-16 9.3E-21 167.2 16.7 206 189-429 32-261 (353)
64 3pxi_A Negative regulator of g 99.7 3.4E-16 1.2E-20 184.7 17.2 195 194-409 491-722 (758)
65 3pxi_A Negative regulator of g 99.7 6.2E-16 2.1E-20 182.5 18.6 189 190-415 176-389 (758)
66 2p65_A Hypothetical protein PF 99.7 1.5E-16 5E-21 152.5 9.8 151 190-362 18-187 (187)
67 2chq_A Replication factor C sm 99.7 5.8E-16 2E-20 161.9 14.7 205 188-428 11-223 (319)
68 1r6b_X CLPA protein; AAA+, N-t 99.7 8.1E-16 2.8E-20 181.4 16.7 194 194-409 458-713 (758)
69 1jr3_A DNA polymerase III subu 99.6 3.4E-15 1.2E-19 160.0 19.5 202 189-428 11-241 (373)
70 1sxj_B Activator 1 37 kDa subu 99.6 3E-15 1E-19 156.8 18.6 201 189-429 16-229 (323)
71 2bjv_A PSP operon transcriptio 99.6 7.3E-16 2.5E-20 158.5 11.5 204 191-424 3-250 (265)
72 1iqp_A RFCS; clamp loader, ext 99.6 7.9E-15 2.7E-19 153.8 17.2 201 188-428 19-231 (327)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 4.5E-16 1.5E-20 175.0 8.2 211 194-432 22-286 (500)
74 1ojl_A Transcriptional regulat 99.6 8.1E-16 2.8E-20 162.5 8.9 202 194-425 2-246 (304)
75 3f9v_A Minichromosome maintena 99.6 1.2E-15 4.2E-20 175.2 6.6 219 194-431 295-587 (595)
76 1qvr_A CLPB protein; coiled co 99.6 1.4E-14 4.7E-19 173.2 15.0 203 193-411 557-819 (854)
77 1sxj_C Activator 1 40 kDa subu 99.5 4.6E-14 1.6E-18 150.6 15.9 202 189-428 20-236 (340)
78 1sxj_E Activator 1 40 kDa subu 99.5 3.4E-14 1.2E-18 151.6 14.8 189 188-408 8-241 (354)
79 1w5s_A Origin recognition comp 99.5 4.2E-13 1.4E-17 145.4 19.2 229 190-432 18-294 (412)
80 3k1j_A LON protease, ATP-depen 99.4 1.1E-13 3.9E-18 159.2 10.4 216 188-430 35-374 (604)
81 3n70_A Transport activator; si 99.4 2.5E-13 8.7E-18 127.4 9.2 112 195-339 2-116 (145)
82 3co5_A Putative two-component 99.4 7.8E-14 2.7E-18 130.7 4.9 112 195-339 5-116 (143)
83 1a5t_A Delta prime, HOLB; zinc 99.4 5.2E-12 1.8E-16 134.8 16.6 159 224-406 21-207 (334)
84 3cmw_A Protein RECA, recombina 99.4 6.2E-13 2.1E-17 166.1 10.0 151 188-339 1014-1218(1706)
85 3kw6_A 26S protease regulatory 99.4 2.3E-12 7.7E-17 108.7 9.9 75 359-433 1-75 (78)
86 2krk_A 26S protease regulatory 99.3 3.3E-12 1.1E-16 110.0 9.5 78 357-434 7-84 (86)
87 3vlf_B 26S protease regulatory 99.3 4E-12 1.4E-16 109.9 8.7 79 362-440 2-80 (88)
88 1ny5_A Transcriptional regulat 99.2 1.3E-11 4.4E-16 134.6 10.4 207 193-427 136-383 (387)
89 2gno_A DNA polymerase III, gam 99.2 3E-11 1E-15 127.7 12.8 142 198-374 1-152 (305)
90 4akg_A Glutathione S-transfera 99.2 7.1E-11 2.4E-15 153.4 17.1 139 227-377 1267-1434(2695)
91 3ec2_A DNA replication protein 99.2 1.5E-10 5.1E-15 111.8 11.5 134 189-340 5-144 (180)
92 3aji_B S6C, proteasome (prosom 99.1 1.3E-10 4.5E-15 98.9 8.0 74 362-435 2-75 (83)
93 2dzn_B 26S protease regulatory 99.0 1.1E-10 3.6E-15 99.5 4.4 73 364-436 1-73 (82)
94 3dzd_A Transcriptional regulat 99.0 7.1E-10 2.4E-14 120.1 11.6 190 194-410 129-360 (368)
95 2w58_A DNAI, primosome compone 99.0 2.6E-10 8.8E-15 111.9 5.9 103 190-299 21-128 (202)
96 3f8t_A Predicted ATPase involv 98.9 2.3E-09 8E-14 118.4 11.1 211 196-431 215-483 (506)
97 2fna_A Conserved hypothetical 98.9 1.3E-07 4.5E-12 99.5 21.4 188 191-406 10-252 (357)
98 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.2E-09 4.3E-14 115.6 4.2 117 227-346 123-242 (331)
99 2kjq_A DNAA-related protein; s 98.8 6.1E-09 2.1E-13 98.4 7.0 103 227-357 36-144 (149)
100 2qgz_A Helicase loader, putati 98.7 3.5E-09 1.2E-13 111.8 3.7 101 190-298 120-226 (308)
101 2qen_A Walker-type ATPase; unk 98.7 1E-06 3.6E-11 92.4 20.3 189 191-405 9-247 (350)
102 1svm_A Large T antigen; AAA+ f 98.7 2.1E-08 7.3E-13 108.8 6.9 120 222-360 164-284 (377)
103 2r2a_A Uncharacterized protein 98.6 1.9E-08 6.6E-13 99.7 5.4 130 227-365 5-157 (199)
104 4akg_A Glutathione S-transfera 98.6 3.5E-07 1.2E-11 119.4 17.0 166 228-411 646-840 (2695)
105 3vkg_A Dynein heavy chain, cyt 98.5 6.6E-07 2.3E-11 117.6 16.3 138 228-377 1305-1472(3245)
106 3cmu_A Protein RECA, recombina 98.4 7.7E-07 2.6E-11 112.9 12.1 114 223-336 1423-1561(2050)
107 1tue_A Replication protein E1; 98.3 3.6E-07 1.2E-11 90.8 4.7 29 228-256 59-87 (212)
108 2c9o_A RUVB-like 1; hexameric 98.2 3.4E-06 1.2E-10 93.5 9.8 128 287-431 296-437 (456)
109 1jr3_D DNA polymerase III, del 98.1 1.5E-05 5E-10 84.6 13.1 178 225-431 16-209 (343)
110 3vkg_A Dynein heavy chain, cyt 98.1 1.2E-05 4E-10 106.1 13.2 126 228-371 605-750 (3245)
111 1ye8_A Protein THEP1, hypothet 98.1 1.2E-05 4E-10 78.0 9.7 28 229-256 2-29 (178)
112 1u0j_A DNA replication protein 98.0 7.4E-06 2.5E-10 84.6 6.9 26 228-253 105-130 (267)
113 1n0w_A DNA repair protein RAD5 97.9 2.9E-05 9.8E-10 77.4 9.5 116 224-339 21-174 (243)
114 2w0m_A SSO2452; RECA, SSPF, un 97.9 3.7E-05 1.3E-09 75.7 9.9 37 225-261 21-60 (235)
115 2cvh_A DNA repair and recombin 97.8 3.8E-05 1.3E-09 75.3 8.9 39 224-262 17-55 (220)
116 1xp8_A RECA protein, recombina 97.8 8.8E-05 3E-09 80.1 11.3 113 224-336 71-208 (366)
117 1z6t_A APAF-1, apoptotic prote 97.7 0.00036 1.2E-08 79.2 16.3 175 193-403 123-327 (591)
118 2z43_A DNA repair and recombin 97.7 5E-05 1.7E-09 80.4 8.3 113 224-336 104-255 (324)
119 3hr8_A Protein RECA; alpha and 97.7 0.00013 4.5E-09 78.4 11.2 108 228-335 62-194 (356)
120 2ehv_A Hypothetical protein PH 97.7 0.00013 4.3E-09 72.9 10.2 113 224-342 27-185 (251)
121 3cmu_A Protein RECA, recombina 97.7 7.7E-05 2.6E-09 95.0 10.5 118 223-340 728-870 (2050)
122 2zr9_A Protein RECA, recombina 97.7 5E-05 1.7E-09 81.4 7.5 76 225-300 59-153 (349)
123 1v5w_A DMC1, meiotic recombina 97.7 8.4E-05 2.9E-09 79.4 9.0 109 229-337 124-272 (343)
124 1qhx_A CPT, protein (chloramph 97.6 0.00011 3.8E-09 69.7 8.1 37 227-263 3-39 (178)
125 4a74_A DNA repair and recombin 97.6 9.7E-05 3.3E-09 72.8 7.6 25 227-251 25-49 (231)
126 3upu_A ATP-dependent DNA helic 97.6 0.00013 4.4E-09 80.8 9.4 55 185-251 15-69 (459)
127 3lda_A DNA repair protein RAD5 97.6 0.00021 7.3E-09 78.0 10.6 115 224-338 175-327 (400)
128 1u94_A RECA protein, recombina 97.6 0.00011 3.6E-09 79.2 7.9 113 224-336 60-197 (356)
129 3sfz_A APAF-1, apoptotic pepti 97.5 0.0011 3.9E-08 80.9 17.6 168 192-395 122-320 (1249)
130 1pzn_A RAD51, DNA repair and r 97.5 0.00016 5.4E-09 77.5 8.7 114 227-340 131-287 (349)
131 2dr3_A UPF0273 protein PH0284; 97.4 0.00062 2.1E-08 67.7 11.1 38 224-261 20-60 (247)
132 2i1q_A DNA repair and recombin 97.4 0.00019 6.3E-09 75.6 7.2 110 227-336 98-256 (322)
133 3cmw_A Protein RECA, recombina 97.4 0.00028 9.6E-09 88.9 9.8 78 223-300 728-824 (1706)
134 3trf_A Shikimate kinase, SK; a 97.4 0.00011 3.8E-09 70.3 4.2 33 227-259 5-37 (185)
135 3io5_A Recombination and repai 97.3 0.00064 2.2E-08 71.8 10.2 110 226-335 26-168 (333)
136 1gvn_B Zeta; postsegregational 97.3 0.00068 2.3E-08 70.5 9.8 60 200-263 10-69 (287)
137 2p5t_B PEZT; postsegregational 97.3 0.00064 2.2E-08 69.0 9.0 60 200-263 9-68 (253)
138 3vaa_A Shikimate kinase, SK; s 97.2 0.00017 6E-09 70.3 4.3 34 226-259 24-57 (199)
139 2rhm_A Putative kinase; P-loop 97.2 0.00019 6.5E-09 68.8 4.2 34 225-258 3-36 (193)
140 1g41_A Heat shock protein HSLU 97.2 0.0023 7.9E-08 70.6 13.3 94 274-371 240-346 (444)
141 2r6a_A DNAB helicase, replicat 97.2 0.001 3.5E-08 73.6 10.2 39 223-261 199-241 (454)
142 2zts_A Putative uncharacterize 97.2 0.00059 2E-08 67.9 7.5 38 224-261 27-68 (251)
143 1nlf_A Regulatory protein REPA 97.2 0.0021 7.2E-08 66.0 11.7 25 227-251 30-54 (279)
144 1cr0_A DNA primase/helicase; R 97.1 0.00063 2.2E-08 70.4 7.5 38 223-260 31-72 (296)
145 4gp7_A Metallophosphoesterase; 97.1 0.00044 1.5E-08 66.0 5.4 19 228-246 10-28 (171)
146 2b8t_A Thymidine kinase; deoxy 97.1 0.00062 2.1E-08 68.4 6.7 69 229-298 14-101 (223)
147 3kb2_A SPBC2 prophage-derived 97.1 0.00032 1.1E-08 65.7 4.3 31 229-259 3-33 (173)
148 2eyu_A Twitching motility prot 97.1 0.00079 2.7E-08 69.1 7.3 67 229-296 27-108 (261)
149 2orw_A Thymidine kinase; TMTK, 97.1 0.00011 3.7E-09 71.5 0.7 30 229-258 5-37 (184)
150 1y63_A LMAJ004144AAA protein; 97.0 0.00034 1.1E-08 67.4 4.1 33 227-259 10-43 (184)
151 3iij_A Coilin-interacting nucl 97.0 0.00031 1.1E-08 67.0 3.8 33 226-258 10-42 (180)
152 1zp6_A Hypothetical protein AT 97.0 0.00038 1.3E-08 66.7 4.4 39 225-263 7-45 (191)
153 2iyv_A Shikimate kinase, SK; t 97.0 0.00034 1.2E-08 66.8 4.0 31 229-259 4-34 (184)
154 1via_A Shikimate kinase; struc 97.0 0.00031 1E-08 66.8 3.6 30 229-258 6-35 (175)
155 2cdn_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 67.3 4.7 35 224-258 17-51 (201)
156 1zuh_A Shikimate kinase; alpha 97.0 0.00038 1.3E-08 65.6 4.0 31 228-258 8-38 (168)
157 2q6t_A DNAB replication FORK h 97.0 0.0021 7.1E-08 70.9 10.5 39 223-261 196-238 (444)
158 2a5y_B CED-4; apoptosis; HET: 97.0 0.0071 2.4E-07 68.3 15.1 145 197-375 131-307 (549)
159 2r8r_A Sensor protein; KDPD, P 97.0 0.0053 1.8E-07 61.8 12.4 32 229-260 8-42 (228)
160 1kag_A SKI, shikimate kinase I 97.0 0.00052 1.8E-08 64.7 4.5 31 227-257 4-34 (173)
161 1qf9_A UMP/CMP kinase, protein 96.9 0.00045 1.6E-08 65.9 3.9 33 226-258 5-37 (194)
162 3jvv_A Twitching mobility prot 96.9 0.0014 4.9E-08 70.3 8.2 68 229-296 125-206 (356)
163 1tev_A UMP-CMP kinase; ploop, 96.9 0.00041 1.4E-08 66.3 3.5 32 227-258 3-34 (196)
164 2ius_A DNA translocase FTSK; n 96.9 0.0033 1.1E-07 70.6 11.3 75 287-371 297-374 (512)
165 3crm_A TRNA delta(2)-isopenten 96.9 0.00076 2.6E-08 71.4 5.6 36 227-262 5-40 (323)
166 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0014 4.8E-08 66.9 7.4 38 227-264 4-44 (260)
167 3lw7_A Adenylate kinase relate 96.9 0.00047 1.6E-08 64.3 3.4 29 229-258 3-31 (179)
168 3t61_A Gluconokinase; PSI-biol 96.9 0.00069 2.4E-08 65.9 4.6 32 227-258 18-49 (202)
169 2c95_A Adenylate kinase 1; tra 96.9 0.00058 2E-08 65.6 3.9 33 227-259 9-41 (196)
170 3e1s_A Exodeoxyribonuclease V, 96.9 0.00092 3.1E-08 76.3 6.2 97 228-338 205-317 (574)
171 1aky_A Adenylate kinase; ATP:A 96.9 0.00061 2.1E-08 67.3 4.1 33 226-258 3-35 (220)
172 2iut_A DNA translocase FTSK; n 96.8 0.0037 1.3E-07 70.9 10.8 74 288-371 345-420 (574)
173 1ly1_A Polynucleotide kinase; 96.8 0.00053 1.8E-08 64.7 3.4 30 227-256 2-32 (181)
174 2ze6_A Isopentenyl transferase 96.8 0.00068 2.3E-08 69.0 4.3 32 229-260 3-34 (253)
175 2vli_A Antibiotic resistance p 96.8 0.00062 2.1E-08 64.7 3.7 30 227-256 5-34 (183)
176 3bh0_A DNAB-like replicative h 96.8 0.0046 1.6E-07 65.0 10.7 39 223-261 64-105 (315)
177 1e6c_A Shikimate kinase; phosp 96.8 0.00059 2E-08 64.2 3.5 31 228-258 3-33 (173)
178 2bwj_A Adenylate kinase 5; pho 96.8 0.00066 2.3E-08 65.3 3.7 32 227-258 12-43 (199)
179 2pez_A Bifunctional 3'-phospho 96.8 0.00085 2.9E-08 63.9 4.3 37 226-262 4-43 (179)
180 1vma_A Cell division protein F 96.8 0.016 5.4E-07 60.8 14.4 73 224-296 101-196 (306)
181 3cm0_A Adenylate kinase; ATP-b 96.8 0.00052 1.8E-08 65.5 2.7 31 228-258 5-35 (186)
182 3be4_A Adenylate kinase; malar 96.7 0.00066 2.3E-08 67.1 3.4 31 228-258 6-36 (217)
183 1zd8_A GTP:AMP phosphotransfer 96.7 0.00074 2.5E-08 67.1 3.8 33 226-258 6-38 (227)
184 1kht_A Adenylate kinase; phosp 96.7 0.00064 2.2E-08 64.8 3.2 25 228-252 4-28 (192)
185 3dl0_A Adenylate kinase; phosp 96.7 0.00077 2.6E-08 66.2 3.8 30 229-258 2-31 (216)
186 2pt5_A Shikimate kinase, SK; a 96.7 0.00085 2.9E-08 62.9 3.7 30 229-258 2-31 (168)
187 3fb4_A Adenylate kinase; psych 96.7 0.00083 2.8E-08 65.9 3.8 30 229-258 2-31 (216)
188 3umf_A Adenylate kinase; rossm 96.7 0.00082 2.8E-08 67.2 3.7 34 224-257 26-59 (217)
189 1ak2_A Adenylate kinase isoenz 96.7 0.00095 3.2E-08 66.7 4.2 32 227-258 16-47 (233)
190 1ukz_A Uridylate kinase; trans 96.7 0.00098 3.4E-08 64.7 4.1 33 227-259 15-47 (203)
191 3tlx_A Adenylate kinase 2; str 96.7 0.00088 3E-08 67.7 3.8 33 226-258 28-60 (243)
192 1g5t_A COB(I)alamin adenosyltr 96.7 0.0081 2.8E-07 59.0 10.6 101 229-339 30-163 (196)
193 3dm5_A SRP54, signal recogniti 96.7 0.006 2E-07 67.3 10.6 72 226-297 99-193 (443)
194 4eun_A Thermoresistant glucoki 96.6 0.0013 4.4E-08 64.0 4.6 32 226-257 28-59 (200)
195 1zak_A Adenylate kinase; ATP:A 96.6 0.00075 2.6E-08 66.7 2.8 32 226-257 4-35 (222)
196 2fz4_A DNA repair protein RAD2 96.6 0.0049 1.7E-07 61.9 8.7 33 229-261 110-142 (237)
197 1knq_A Gluconate kinase; ALFA/ 96.6 0.0013 4.3E-08 62.3 4.1 30 228-257 9-38 (175)
198 1vt4_I APAF-1 related killer D 96.5 0.0075 2.6E-07 72.8 10.5 43 197-250 131-173 (1221)
199 1e4v_A Adenylate kinase; trans 96.5 0.0015 5E-08 64.3 3.6 30 229-258 2-31 (214)
200 1s96_A Guanylate kinase, GMP k 96.5 0.0052 1.8E-07 61.3 7.7 24 229-252 18-41 (219)
201 3sr0_A Adenylate kinase; phosp 96.4 0.0015 5.3E-08 64.6 3.7 29 230-258 3-31 (206)
202 2pbr_A DTMP kinase, thymidylat 96.4 0.0022 7.6E-08 61.1 4.6 31 229-259 2-35 (195)
203 1cke_A CK, MSSA, protein (cyti 96.4 0.0022 7.4E-08 63.2 4.4 31 228-258 6-36 (227)
204 2v54_A DTMP kinase, thymidylat 96.4 0.0026 8.8E-08 61.4 4.7 33 227-259 4-37 (204)
205 2ewv_A Twitching motility prot 96.3 0.0034 1.1E-07 67.7 5.9 79 218-296 127-219 (372)
206 3uie_A Adenylyl-sulfate kinase 96.3 0.0023 7.9E-08 62.2 4.2 38 225-262 23-63 (200)
207 2if2_A Dephospho-COA kinase; a 96.3 0.0018 6.2E-08 62.8 3.3 30 229-259 3-32 (204)
208 2bbw_A Adenylate kinase 4, AK4 96.3 0.0027 9.2E-08 63.8 4.5 31 227-257 27-57 (246)
209 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0014 4.8E-08 70.2 2.4 30 229-258 26-55 (359)
210 1nks_A Adenylate kinase; therm 96.3 0.0016 5.3E-08 62.1 2.5 32 229-260 3-37 (194)
211 2jaq_A Deoxyguanosine kinase; 96.3 0.0023 8E-08 61.5 3.8 29 229-257 2-30 (205)
212 3bgw_A DNAB-like replicative h 96.3 0.011 3.7E-07 65.3 9.6 39 223-261 193-234 (444)
213 2xb4_A Adenylate kinase; ATP-b 96.2 0.0023 7.9E-08 63.5 3.7 30 229-258 2-31 (223)
214 2z0h_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 60.2 4.5 30 230-259 3-35 (197)
215 1uf9_A TT1252 protein; P-loop, 96.2 0.0027 9.2E-08 61.1 3.9 31 227-258 8-38 (203)
216 1tf7_A KAIC; homohexamer, hexa 96.2 0.021 7.2E-07 64.1 11.8 111 226-342 38-188 (525)
217 1q57_A DNA primase/helicase; d 96.2 0.011 3.6E-07 66.1 9.2 38 224-261 239-280 (503)
218 3ake_A Cytidylate kinase; CMP 96.2 0.0031 1.1E-07 60.9 4.2 31 229-259 4-34 (208)
219 1jjv_A Dephospho-COA kinase; P 96.2 0.0026 8.9E-08 61.8 3.6 29 229-258 4-32 (206)
220 1m7g_A Adenylylsulfate kinase; 96.1 0.0069 2.4E-07 59.3 6.5 38 226-263 24-65 (211)
221 3kl4_A SRP54, signal recogniti 96.1 0.0088 3E-07 65.8 7.8 72 226-297 96-190 (433)
222 3r20_A Cytidylate kinase; stru 96.1 0.004 1.4E-07 62.9 4.4 31 227-257 9-39 (233)
223 2wwf_A Thymidilate kinase, put 96.0 0.0019 6.5E-08 62.8 1.9 30 226-255 9-38 (212)
224 2px0_A Flagellar biosynthesis 96.0 0.03 1E-06 58.3 11.1 61 200-262 79-144 (296)
225 1uj2_A Uridine-cytidine kinase 96.0 0.0051 1.8E-07 62.1 5.0 40 225-264 20-67 (252)
226 2grj_A Dephospho-COA kinase; T 96.0 0.0035 1.2E-07 61.3 3.5 31 229-259 14-44 (192)
227 1nn5_A Similar to deoxythymidy 96.0 0.0023 7.8E-08 62.2 2.2 28 226-253 8-35 (215)
228 2plr_A DTMP kinase, probable t 96.0 0.0051 1.8E-07 59.4 4.6 28 227-254 4-31 (213)
229 3nwj_A ATSK2; P loop, shikimat 96.0 0.003 1E-07 64.5 3.0 32 228-259 49-80 (250)
230 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.003 1E-07 67.0 3.0 70 228-297 172-251 (330)
231 1tf7_A KAIC; homohexamer, hexa 95.9 0.042 1.4E-06 61.7 12.3 106 227-339 281-417 (525)
232 3a8t_A Adenylate isopentenyltr 95.9 0.0043 1.5E-07 66.1 3.9 36 227-262 40-75 (339)
233 3thx_B DNA mismatch repair pro 95.9 0.025 8.5E-07 67.8 10.8 108 227-343 673-800 (918)
234 2h92_A Cytidylate kinase; ross 95.8 0.005 1.7E-07 60.4 3.8 32 227-258 3-34 (219)
235 2qor_A Guanylate kinase; phosp 95.8 0.0063 2.2E-07 59.3 4.5 27 226-252 11-37 (204)
236 2gxq_A Heat resistant RNA depe 95.8 0.051 1.7E-06 52.2 10.9 18 228-245 39-56 (207)
237 1vht_A Dephospho-COA kinase; s 95.8 0.0047 1.6E-07 60.7 3.5 31 227-258 4-34 (218)
238 2qt1_A Nicotinamide riboside k 95.8 0.0048 1.6E-07 60.1 3.5 32 228-259 22-54 (207)
239 1ltq_A Polynucleotide kinase; 95.8 0.0037 1.3E-07 64.5 2.8 31 227-257 2-33 (301)
240 1w36_D RECD, exodeoxyribonucle 95.8 0.02 6.9E-07 65.6 9.2 22 229-250 166-187 (608)
241 3foz_A TRNA delta(2)-isopenten 95.7 0.0063 2.1E-07 64.0 4.3 38 226-263 9-46 (316)
242 2yvu_A Probable adenylyl-sulfa 95.7 0.0076 2.6E-07 57.6 4.6 35 226-260 12-49 (186)
243 3tau_A Guanylate kinase, GMP k 95.7 0.0077 2.6E-07 59.0 4.6 26 227-252 8-33 (208)
244 3c8u_A Fructokinase; YP_612366 95.6 0.0095 3.3E-07 58.2 4.9 26 227-252 22-47 (208)
245 2j41_A Guanylate kinase; GMP, 95.6 0.0069 2.3E-07 58.4 3.9 26 226-251 5-30 (207)
246 1q3t_A Cytidylate kinase; nucl 95.6 0.0087 3E-07 59.7 4.7 32 227-258 16-47 (236)
247 2axn_A 6-phosphofructo-2-kinas 95.6 0.02 7E-07 64.4 8.2 36 227-262 35-73 (520)
248 3zvl_A Bifunctional polynucleo 95.6 0.013 4.5E-07 64.0 6.5 33 225-257 256-288 (416)
249 4a1f_A DNAB helicase, replicat 95.6 0.054 1.8E-06 57.6 11.0 39 223-261 42-83 (338)
250 3rlf_A Maltose/maltodextrin im 95.5 0.011 3.7E-07 64.0 5.4 23 229-251 31-53 (381)
251 3gfo_A Cobalt import ATP-bindi 95.5 0.016 5.5E-07 59.8 6.5 23 229-251 36-58 (275)
252 4e22_A Cytidylate kinase; P-lo 95.5 0.0094 3.2E-07 60.4 4.7 30 228-257 28-57 (252)
253 3b6e_A Interferon-induced heli 95.5 0.022 7.5E-07 54.9 7.1 24 228-251 49-72 (216)
254 1ex7_A Guanylate kinase; subst 95.5 0.0084 2.9E-07 58.4 4.0 28 228-255 2-29 (186)
255 1kgd_A CASK, peripheral plasma 95.5 0.0084 2.9E-07 57.3 4.0 26 227-252 5-30 (180)
256 2nq2_C Hypothetical ABC transp 95.5 0.021 7.2E-07 58.1 7.1 23 229-251 33-55 (253)
257 2f6r_A COA synthase, bifunctio 95.5 0.0066 2.3E-07 62.7 3.4 31 227-258 75-105 (281)
258 3thx_A DNA mismatch repair pro 95.5 0.049 1.7E-06 65.4 11.3 22 228-249 663-684 (934)
259 3llm_A ATP-dependent RNA helic 95.5 0.051 1.8E-06 54.0 9.9 21 228-248 77-97 (235)
260 4g1u_C Hemin import ATP-bindin 95.4 0.018 6.1E-07 59.2 6.4 23 229-251 39-61 (266)
261 1x6v_B Bifunctional 3'-phospho 95.4 0.02 6.8E-07 65.8 7.3 38 226-263 51-91 (630)
262 3fvq_A Fe(3+) IONS import ATP- 95.4 0.021 7.3E-07 61.2 7.0 23 229-251 32-54 (359)
263 2yhs_A FTSY, cell division pro 95.4 0.14 4.8E-06 57.1 13.7 27 225-251 291-317 (503)
264 1rz3_A Hypothetical protein rb 95.3 0.026 9E-07 54.8 6.8 35 227-261 22-59 (201)
265 2bdt_A BH3686; alpha-beta prot 95.3 0.011 3.9E-07 56.4 4.1 33 229-262 4-36 (189)
266 3d3q_A TRNA delta(2)-isopenten 95.3 0.0098 3.4E-07 63.4 3.9 33 228-260 8-40 (340)
267 3asz_A Uridine kinase; cytidin 95.3 0.0087 3E-07 58.2 3.2 31 227-257 6-38 (211)
268 2qmh_A HPR kinase/phosphorylas 95.3 0.0093 3.2E-07 58.9 3.4 33 227-260 34-66 (205)
269 1xx6_A Thymidine kinase; NESG, 95.2 0.018 6.2E-07 56.2 5.4 69 229-298 10-93 (191)
270 1hv8_A Putative ATP-dependent 95.2 0.12 4.1E-06 53.6 12.1 57 191-249 6-66 (367)
271 3exa_A TRNA delta(2)-isopenten 95.2 0.011 3.9E-07 62.2 4.1 34 228-261 4-37 (322)
272 3tui_C Methionine import ATP-b 95.2 0.023 8E-07 61.1 6.5 23 229-251 56-78 (366)
273 1t6n_A Probable ATP-dependent 95.1 0.28 9.5E-06 47.6 13.7 57 191-249 14-73 (220)
274 2it1_A 362AA long hypothetical 95.1 0.024 8.1E-07 60.9 6.3 23 229-251 31-53 (362)
275 2xau_A PRE-mRNA-splicing facto 95.1 0.057 1.9E-06 63.7 10.0 23 228-250 110-132 (773)
276 3fdi_A Uncharacterized protein 95.1 0.014 4.6E-07 57.3 4.0 29 229-257 8-36 (201)
277 2yyz_A Sugar ABC transporter, 95.0 0.024 8.3E-07 60.8 6.2 23 229-251 31-53 (359)
278 1z47_A CYSA, putative ABC-tran 95.0 0.025 8.7E-07 60.6 6.2 23 229-251 43-65 (355)
279 1zu4_A FTSY; GTPase, signal re 95.0 0.054 1.8E-06 57.1 8.5 38 224-261 102-142 (320)
280 1w4r_A Thymidine kinase; type 95.0 0.022 7.5E-07 55.9 5.0 68 229-298 22-103 (195)
281 2v3c_C SRP54, signal recogniti 94.9 0.03 1E-06 61.6 6.7 36 226-261 98-136 (432)
282 3tr0_A Guanylate kinase, GMP k 94.9 0.016 5.4E-07 55.8 3.9 24 228-251 8-31 (205)
283 3a00_A Guanylate kinase, GMP k 94.9 0.014 4.8E-07 55.9 3.6 25 228-252 2-26 (186)
284 1v43_A Sugar-binding transport 94.9 0.023 8E-07 61.2 5.6 23 229-251 39-61 (372)
285 4b3f_X DNA-binding protein smu 94.9 0.14 4.9E-06 58.9 12.5 57 191-261 183-242 (646)
286 1qde_A EIF4A, translation init 94.9 0.16 5.4E-06 49.5 11.1 52 190-243 13-67 (224)
287 2xxa_A Signal recognition part 94.8 0.092 3.1E-06 57.7 10.3 72 225-296 98-193 (433)
288 1p9r_A General secretion pathw 94.7 0.056 1.9E-06 59.1 8.2 93 190-296 143-246 (418)
289 1wb9_A DNA mismatch repair pro 94.7 0.13 4.4E-06 60.8 11.6 24 227-250 607-630 (800)
290 3e70_C DPA, signal recognition 94.7 0.074 2.5E-06 56.2 8.7 27 225-251 127-153 (328)
291 1j8m_F SRP54, signal recogniti 94.6 0.1 3.5E-06 54.3 9.5 35 227-261 98-135 (297)
292 3lxw_A GTPase IMAP family memb 94.6 0.24 8.3E-06 49.7 12.1 24 228-251 22-45 (247)
293 3eph_A TRNA isopentenyltransfe 94.6 0.017 5.9E-07 62.8 3.7 34 227-260 2-35 (409)
294 1odf_A YGR205W, hypothetical 3 94.6 0.015 5.1E-07 60.5 2.9 28 225-252 29-56 (290)
295 3d31_A Sulfate/molybdate ABC t 94.5 0.031 1.1E-06 59.7 5.4 23 229-251 28-50 (348)
296 2oap_1 GSPE-2, type II secreti 94.5 0.021 7.2E-07 64.1 4.2 70 227-296 260-343 (511)
297 2j37_W Signal recognition part 94.5 0.097 3.3E-06 58.6 9.3 74 225-298 99-195 (504)
298 1lvg_A Guanylate kinase, GMP k 94.4 0.021 7.2E-07 55.5 3.3 26 227-252 4-29 (198)
299 3ney_A 55 kDa erythrocyte memb 94.3 0.036 1.2E-06 54.4 4.9 27 226-252 18-44 (197)
300 1ls1_A Signal recognition part 94.3 0.088 3E-06 54.7 8.1 35 226-260 97-134 (295)
301 1z6g_A Guanylate kinase; struc 94.3 0.025 8.5E-07 55.9 3.7 24 228-251 24-47 (218)
302 1nrj_B SR-beta, signal recogni 94.3 0.29 1E-05 47.1 11.4 24 228-251 13-36 (218)
303 3gmt_A Adenylate kinase; ssgci 94.2 0.024 8.3E-07 57.1 3.5 30 229-258 10-39 (230)
304 1ewq_A DNA mismatch repair pro 94.2 0.11 3.7E-06 61.2 9.5 24 227-250 576-599 (765)
305 1c9k_A COBU, adenosylcobinamid 94.2 0.032 1.1E-06 54.0 4.2 32 230-262 2-33 (180)
306 3lnc_A Guanylate kinase, GMP k 94.2 0.02 6.8E-07 56.7 2.8 25 227-251 27-52 (231)
307 1vec_A ATP-dependent RNA helic 94.2 0.24 8.3E-06 47.4 10.5 18 228-245 41-58 (206)
308 2pl3_A Probable ATP-dependent 94.2 0.16 5.4E-06 50.0 9.4 54 190-245 24-80 (236)
309 3b9q_A Chloroplast SRP recepto 94.1 0.051 1.8E-06 56.8 5.9 28 224-251 97-124 (302)
310 1m8p_A Sulfate adenylyltransfe 94.1 0.076 2.6E-06 60.4 7.8 40 225-264 394-437 (573)
311 1htw_A HI0065; nucleotide-bind 94.1 0.033 1.1E-06 52.6 4.0 23 229-251 35-57 (158)
312 2jeo_A Uridine-cytidine kinase 94.0 0.03 1E-06 56.1 3.6 26 229-254 27-52 (245)
313 2j9r_A Thymidine kinase; TK1, 93.9 0.057 1.9E-06 53.7 5.4 30 230-259 31-63 (214)
314 1znw_A Guanylate kinase, GMP k 93.9 0.036 1.2E-06 54.0 3.9 25 228-252 21-45 (207)
315 3iuy_A Probable ATP-dependent 93.9 0.39 1.3E-05 46.8 11.5 56 188-245 16-75 (228)
316 3hdt_A Putative kinase; struct 93.9 0.032 1.1E-06 55.8 3.5 29 229-257 16-44 (223)
317 2ffh_A Protein (FFH); SRP54, s 93.9 0.24 8.3E-06 54.2 10.8 71 226-296 97-190 (425)
318 2o8b_B DNA mismatch repair pro 93.9 0.23 7.8E-06 60.3 11.6 22 227-248 789-810 (1022)
319 3fe2_A Probable ATP-dependent 93.8 0.23 7.8E-06 49.3 9.8 55 189-245 27-84 (242)
320 2v9p_A Replication protein E1; 93.8 0.04 1.4E-06 57.8 4.2 30 223-252 122-151 (305)
321 1gtv_A TMK, thymidylate kinase 93.8 0.014 4.9E-07 56.5 0.8 24 229-252 2-25 (214)
322 1a7j_A Phosphoribulokinase; tr 93.8 0.031 1.1E-06 58.0 3.3 37 228-264 6-45 (290)
323 1xti_A Probable ATP-dependent 93.7 0.76 2.6E-05 48.1 14.2 56 191-248 8-66 (391)
324 4eaq_A DTMP kinase, thymidylat 93.7 0.057 1.9E-06 53.9 5.0 32 227-258 26-59 (229)
325 2og2_A Putative signal recogni 93.6 0.069 2.4E-06 57.2 5.8 52 200-251 127-181 (359)
326 1bif_A 6-phosphofructo-2-kinas 93.6 0.12 4.1E-06 57.1 7.9 33 227-259 39-74 (469)
327 3qf4_B Uncharacterized ABC tra 93.5 0.33 1.1E-05 55.4 11.7 25 227-251 381-405 (598)
328 3pey_A ATP-dependent RNA helic 93.5 0.57 1.9E-05 49.0 12.8 55 191-247 5-64 (395)
329 2gza_A Type IV secretion syste 93.5 0.094 3.2E-06 56.0 6.7 70 227-296 175-262 (361)
330 3tqf_A HPR(Ser) kinase; transf 93.4 0.047 1.6E-06 52.7 3.7 24 227-250 16-39 (181)
331 3bor_A Human initiation factor 93.3 0.087 3E-06 52.3 5.7 55 189-245 28-85 (237)
332 3p32_A Probable GTPase RV1496/ 93.2 0.16 5.4E-06 54.0 7.9 24 228-251 80-103 (355)
333 3kta_A Chromosome segregation 93.2 0.042 1.4E-06 51.9 3.0 24 229-252 28-51 (182)
334 1sq5_A Pantothenate kinase; P- 93.2 0.051 1.7E-06 56.7 3.8 26 227-252 80-105 (308)
335 3ber_A Probable ATP-dependent 93.1 0.34 1.2E-05 48.5 9.7 54 190-245 42-98 (249)
336 3vkw_A Replicase large subunit 93.1 0.15 5E-06 56.2 7.4 23 228-250 162-184 (446)
337 2ged_A SR-beta, signal recogni 92.9 0.096 3.3E-06 49.4 5.0 47 199-251 26-72 (193)
338 2i3b_A HCR-ntpase, human cance 92.9 0.053 1.8E-06 52.7 3.2 23 229-251 3-25 (189)
339 1p5z_B DCK, deoxycytidine kina 92.9 0.032 1.1E-06 56.5 1.7 30 227-256 24-54 (263)
340 4f4c_A Multidrug resistance pr 92.9 0.096 3.3E-06 65.4 6.2 26 227-252 444-469 (1321)
341 2ocp_A DGK, deoxyguanosine kin 92.8 0.063 2.1E-06 53.5 3.7 26 227-252 2-27 (241)
342 3ozx_A RNAse L inhibitor; ATP 92.8 0.18 6.2E-06 56.9 7.8 23 229-251 296-318 (538)
343 3cr8_A Sulfate adenylyltranfer 92.8 0.11 3.8E-06 58.8 6.1 38 227-264 369-410 (552)
344 1q0u_A Bstdead; DEAD protein, 92.7 0.09 3.1E-06 51.3 4.6 18 228-245 42-59 (219)
345 3qf4_A ABC transporter, ATP-bi 92.6 0.12 4E-06 59.0 6.1 25 227-251 369-393 (587)
346 3tqc_A Pantothenate kinase; bi 92.6 0.11 3.9E-06 54.7 5.5 28 225-252 90-117 (321)
347 4a82_A Cystic fibrosis transme 92.6 0.28 9.4E-06 55.7 9.1 24 228-251 368-391 (578)
348 2orv_A Thymidine kinase; TP4A 92.6 0.26 8.8E-06 49.6 7.8 90 229-338 21-125 (234)
349 3aez_A Pantothenate kinase; tr 92.6 0.068 2.3E-06 56.1 3.8 26 226-251 89-114 (312)
350 2zj8_A DNA helicase, putative 92.5 0.31 1.1E-05 56.6 9.7 19 227-245 39-57 (720)
351 2j0s_A ATP-dependent RNA helic 92.5 0.51 1.7E-05 50.1 10.7 57 189-247 35-94 (410)
352 3eiq_A Eukaryotic initiation f 92.5 0.44 1.5E-05 50.5 10.1 53 191-245 40-95 (414)
353 1wp9_A ATP-dependent RNA helic 92.4 0.59 2E-05 49.8 11.1 33 229-261 25-61 (494)
354 1np6_A Molybdopterin-guanine d 92.4 0.082 2.8E-06 50.7 3.8 25 227-251 6-30 (174)
355 2va8_A SSO2462, SKI2-type heli 92.3 0.32 1.1E-05 56.4 9.5 55 190-246 7-65 (715)
356 2fwr_A DNA repair protein RAD2 92.3 0.2 6.9E-06 54.7 7.3 33 229-261 110-142 (472)
357 2p6r_A Afuhel308 helicase; pro 92.2 0.13 4.5E-06 59.6 6.0 19 227-245 40-58 (702)
358 2qm8_A GTPase/ATPase; G protei 92.2 0.35 1.2E-05 51.1 8.8 23 229-251 57-79 (337)
359 2gj8_A MNME, tRNA modification 92.2 0.19 6.4E-06 47.0 6.1 22 229-250 6-27 (172)
360 1s2m_A Putative ATP-dependent 92.2 0.52 1.8E-05 49.7 10.2 56 190-247 20-78 (400)
361 3b85_A Phosphate starvation-in 92.2 0.066 2.3E-06 52.8 2.9 22 229-250 24-45 (208)
362 3q72_A GTP-binding protein RAD 92.2 0.12 3.9E-06 47.3 4.4 21 229-249 4-24 (166)
363 1rj9_A FTSY, signal recognitio 92.2 0.092 3.1E-06 54.9 4.1 26 226-251 101-126 (304)
364 3lxx_A GTPase IMAP family memb 92.2 0.29 1E-05 48.4 7.7 24 228-251 30-53 (239)
365 3j16_B RLI1P; ribosome recycli 92.2 0.17 5.7E-06 58.0 6.6 23 229-251 105-127 (608)
366 3tif_A Uncharacterized ABC tra 92.1 0.054 1.9E-06 54.3 2.3 24 229-252 33-56 (235)
367 2cbz_A Multidrug resistance-as 92.1 0.056 1.9E-06 54.4 2.3 24 228-251 32-55 (237)
368 4i1u_A Dephospho-COA kinase; s 92.0 0.089 3E-06 52.2 3.6 30 229-259 11-40 (210)
369 2gks_A Bifunctional SAT/APS ki 92.0 0.23 7.8E-06 56.1 7.4 38 227-264 372-412 (546)
370 2pcj_A ABC transporter, lipopr 91.9 0.05 1.7E-06 54.2 1.7 24 229-252 32-55 (224)
371 2onk_A Molybdate/tungstate ABC 91.9 0.068 2.3E-06 53.9 2.6 24 228-251 25-48 (240)
372 1sky_E F1-ATPase, F1-ATP synth 91.8 0.096 3.3E-06 58.0 4.0 23 229-251 153-175 (473)
373 1xjc_A MOBB protein homolog; s 91.8 0.1 3.5E-06 49.9 3.7 32 228-259 5-39 (169)
374 3def_A T7I23.11 protein; chlor 91.8 0.48 1.6E-05 47.8 8.9 24 228-251 37-60 (262)
375 3tbk_A RIG-I helicase domain; 91.7 1.3 4.6E-05 48.5 13.3 34 228-261 20-61 (555)
376 3dz8_A RAS-related protein RAB 91.7 0.77 2.6E-05 43.2 9.8 23 229-251 25-47 (191)
377 4edh_A DTMP kinase, thymidylat 91.6 0.14 4.9E-06 50.6 4.6 31 228-258 7-40 (213)
378 1g8f_A Sulfate adenylyltransfe 91.5 0.11 3.8E-06 58.2 4.2 27 227-253 395-421 (511)
379 1b0u_A Histidine permease; ABC 91.5 0.07 2.4E-06 54.5 2.3 24 229-252 34-57 (262)
380 2p67_A LAO/AO transport system 91.4 0.4 1.4E-05 50.6 8.1 25 227-251 56-80 (341)
381 1mv5_A LMRA, multidrug resista 91.3 0.067 2.3E-06 53.9 1.9 23 229-251 30-52 (243)
382 1g6h_A High-affinity branched- 91.3 0.071 2.4E-06 54.2 2.0 24 229-252 35-58 (257)
383 1sgw_A Putative ABC transporte 91.2 0.084 2.9E-06 52.3 2.5 23 229-251 37-59 (214)
384 2zu0_C Probable ATP-dependent 91.2 0.09 3.1E-06 53.8 2.8 23 229-251 48-70 (267)
385 2d2e_A SUFC protein; ABC-ATPas 91.2 0.082 2.8E-06 53.5 2.4 22 229-250 31-52 (250)
386 2ghi_A Transport protein; mult 91.2 0.078 2.7E-06 54.1 2.3 25 228-252 47-71 (260)
387 2f9l_A RAB11B, member RAS onco 91.1 0.11 3.9E-06 49.6 3.3 23 229-251 7-29 (199)
388 2olj_A Amino acid ABC transpor 91.1 0.08 2.7E-06 54.2 2.3 24 229-252 52-75 (263)
389 2ixe_A Antigen peptide transpo 91.1 0.085 2.9E-06 54.1 2.4 25 228-252 46-70 (271)
390 3ice_A Transcription terminati 91.0 0.57 1.9E-05 50.8 8.8 23 229-251 176-198 (422)
391 1svi_A GTP-binding protein YSX 91.0 0.11 3.9E-06 48.9 3.1 25 226-250 22-46 (195)
392 1oix_A RAS-related protein RAB 91.0 0.11 3.8E-06 49.5 3.0 23 229-251 31-53 (191)
393 2pze_A Cystic fibrosis transme 91.0 0.075 2.6E-06 53.1 1.9 24 228-251 35-58 (229)
394 2ff7_A Alpha-hemolysin translo 91.0 0.076 2.6E-06 53.7 1.9 24 229-252 37-60 (247)
395 3v9p_A DTMP kinase, thymidylat 91.0 0.18 6.2E-06 50.4 4.7 24 228-251 26-49 (227)
396 1ji0_A ABC transporter; ATP bi 90.9 0.077 2.6E-06 53.4 1.9 24 229-252 34-57 (240)
397 4a2p_A RIG-I, retinoic acid in 90.9 1.4 4.9E-05 48.4 12.3 23 228-250 23-45 (556)
398 2yz2_A Putative ABC transporte 90.8 0.089 3E-06 53.8 2.3 24 229-252 35-58 (266)
399 3oiy_A Reverse gyrase helicase 90.8 0.3 1E-05 52.3 6.5 20 228-247 37-56 (414)
400 1vpl_A ABC transporter, ATP-bi 90.8 0.09 3.1E-06 53.6 2.3 24 229-252 43-66 (256)
401 3sop_A Neuronal-specific septi 90.8 0.12 4.1E-06 53.0 3.2 23 229-251 4-26 (270)
402 1fuu_A Yeast initiation factor 90.7 0.52 1.8E-05 49.5 8.2 55 189-245 19-76 (394)
403 2qi9_C Vitamin B12 import ATP- 90.7 0.084 2.9E-06 53.6 1.9 24 229-252 28-51 (249)
404 3ly5_A ATP-dependent RNA helic 90.6 0.77 2.6E-05 46.2 9.1 18 228-245 92-109 (262)
405 3k53_A Ferrous iron transport 90.6 0.2 6.8E-06 50.9 4.6 22 229-250 5-26 (271)
406 2dyk_A GTP-binding protein; GT 90.5 0.15 5E-06 46.3 3.2 23 229-251 3-25 (161)
407 1zd9_A ADP-ribosylation factor 90.5 0.75 2.6E-05 43.2 8.4 22 229-250 24-45 (188)
408 1lw7_A Transcriptional regulat 90.5 0.11 3.9E-06 55.2 2.8 28 227-254 170-197 (365)
409 3tmk_A Thymidylate kinase; pho 90.4 0.25 8.7E-06 49.0 5.1 29 227-255 5-33 (216)
410 1z2a_A RAS-related protein RAB 90.4 0.13 4.6E-06 46.8 2.9 22 229-250 7-28 (168)
411 3fmp_B ATP-dependent RNA helic 90.4 1.4 4.8E-05 48.1 11.6 58 190-249 91-154 (479)
412 2ihy_A ABC transporter, ATP-bi 90.4 0.091 3.1E-06 54.2 1.9 24 229-252 49-72 (279)
413 2wsm_A Hydrogenase expression/ 90.4 0.22 7.6E-06 48.2 4.6 25 228-252 31-55 (221)
414 2gk6_A Regulator of nonsense t 90.2 0.13 4.4E-06 59.0 3.2 33 229-261 197-233 (624)
415 3lv8_A DTMP kinase, thymidylat 90.2 0.17 5.7E-06 51.0 3.6 25 227-251 27-51 (236)
416 1f2t_A RAD50 ABC-ATPase; DNA d 90.2 0.13 4.4E-06 47.8 2.6 23 229-251 25-47 (149)
417 3sqw_A ATP-dependent RNA helic 90.1 0.76 2.6E-05 51.8 9.4 18 227-244 60-77 (579)
418 2f1r_A Molybdopterin-guanine d 90.1 0.088 3E-06 50.3 1.4 25 228-252 3-27 (171)
419 2wji_A Ferrous iron transport 90.0 0.15 5E-06 47.2 2.8 22 229-250 5-26 (165)
420 1kao_A RAP2A; GTP-binding prot 90.0 0.17 5.8E-06 45.8 3.2 23 229-251 5-27 (167)
421 2ce2_X GTPase HRAS; signaling 90.0 0.16 5.6E-06 45.8 3.1 23 229-251 5-27 (166)
422 2f7s_A C25KG, RAS-related prot 90.0 0.84 2.9E-05 43.8 8.4 22 229-250 27-48 (217)
423 2xtp_A GTPase IMAP family memb 89.9 1.1 3.8E-05 44.6 9.5 25 227-251 22-46 (260)
424 2pjz_A Hypothetical protein ST 89.8 0.13 4.4E-06 52.6 2.5 24 228-251 31-54 (263)
425 1g29_1 MALK, maltose transport 89.8 0.15 5.1E-06 54.9 3.0 23 229-251 31-53 (372)
426 2zej_A Dardarin, leucine-rich 89.7 0.13 4.5E-06 48.4 2.3 22 229-250 4-25 (184)
427 1u8z_A RAS-related protein RAL 89.7 0.19 6.4E-06 45.6 3.2 23 228-250 5-27 (168)
428 2v6i_A RNA helicase; membrane, 89.7 0.86 2.9E-05 49.6 9.1 21 228-248 3-24 (431)
429 2www_A Methylmalonic aciduria 89.6 0.46 1.6E-05 50.4 6.7 23 229-251 76-98 (349)
430 1ek0_A Protein (GTP-binding pr 89.6 0.19 6.5E-06 45.7 3.2 23 229-251 5-27 (170)
431 2nzj_A GTP-binding protein REM 89.6 0.16 5.6E-06 46.6 2.8 22 229-250 6-27 (175)
432 1z0j_A RAB-22, RAS-related pro 89.6 0.19 6.4E-06 45.9 3.2 23 229-251 8-30 (170)
433 3dkp_A Probable ATP-dependent 89.5 0.99 3.4E-05 44.5 8.7 17 228-244 67-83 (245)
434 2vp4_A Deoxynucleoside kinase; 89.5 0.21 7.1E-06 49.5 3.6 26 229-255 22-47 (230)
435 3ld9_A DTMP kinase, thymidylat 89.4 0.21 7.1E-06 49.9 3.6 27 227-253 21-47 (223)
436 1wms_A RAB-9, RAB9, RAS-relate 89.3 0.2 7E-06 46.1 3.2 22 229-250 9-30 (177)
437 1oyw_A RECQ helicase, ATP-depe 89.3 0.64 2.2E-05 52.0 7.9 21 228-248 41-61 (523)
438 1g16_A RAS-related protein SEC 89.3 0.2 6.7E-06 45.7 3.1 22 229-250 5-26 (170)
439 2wjg_A FEOB, ferrous iron tran 89.3 0.19 6.5E-06 47.0 3.0 22 229-250 9-30 (188)
440 2erx_A GTP-binding protein DI- 89.2 0.19 6.7E-06 45.8 3.0 22 229-250 5-26 (172)
441 1z08_A RAS-related protein RAB 89.2 0.21 7.1E-06 45.6 3.2 22 229-250 8-29 (170)
442 1ky3_A GTP-binding protein YPT 89.2 0.21 7.2E-06 46.1 3.2 24 228-251 9-32 (182)
443 3gd7_A Fusion complex of cysti 89.2 0.16 5.3E-06 55.1 2.6 24 228-251 48-71 (390)
444 2bbs_A Cystic fibrosis transme 89.1 0.15 5E-06 53.0 2.3 30 222-251 57-88 (290)
445 2lkc_A Translation initiation 89.1 0.25 8.7E-06 45.5 3.7 24 227-250 8-31 (178)
446 3iby_A Ferrous iron transport 89.1 0.42 1.4E-05 48.4 5.6 22 229-250 3-24 (256)
447 1nij_A Hypothetical protein YJ 89.1 0.33 1.1E-05 50.7 5.0 23 229-251 6-28 (318)
448 1r2q_A RAS-related protein RAB 89.0 0.22 7.6E-06 45.3 3.2 22 229-250 8-29 (170)
449 3q85_A GTP-binding protein REM 89.0 0.19 6.7E-06 45.9 2.8 21 229-249 4-24 (169)
450 1c1y_A RAS-related protein RAP 89.0 0.23 7.7E-06 45.2 3.2 22 229-250 5-26 (167)
451 2hxs_A RAB-26, RAS-related pro 88.9 0.23 7.8E-06 45.8 3.3 22 229-250 8-29 (178)
452 2atv_A RERG, RAS-like estrogen 88.9 0.23 8E-06 47.0 3.4 24 227-250 28-51 (196)
453 2dpy_A FLII, flagellum-specifi 88.9 0.32 1.1E-05 53.5 4.9 26 229-254 159-184 (438)
454 3bc1_A RAS-related protein RAB 88.9 0.23 7.8E-06 46.3 3.2 23 228-250 12-34 (195)
455 2i4i_A ATP-dependent RNA helic 88.8 1.4 4.6E-05 46.7 9.7 53 190-244 14-69 (417)
456 2qtf_A Protein HFLX, GTP-bindi 88.8 0.75 2.6E-05 49.2 7.6 23 229-251 181-203 (364)
457 2e87_A Hypothetical protein PH 88.7 2.2 7.6E-05 45.0 11.2 24 227-250 167-190 (357)
458 1r8s_A ADP-ribosylation factor 88.6 0.25 8.5E-06 44.9 3.2 22 229-250 2-23 (164)
459 1ko7_A HPR kinase/phosphatase; 88.6 0.26 8.9E-06 51.8 3.8 28 227-255 144-171 (314)
460 1pui_A ENGB, probable GTP-bind 88.6 0.11 3.9E-06 49.7 0.9 25 227-251 26-50 (210)
461 1oxx_K GLCV, glucose, ABC tran 88.6 0.11 3.7E-06 55.6 0.8 23 229-251 33-55 (353)
462 2p5s_A RAS and EF-hand domain 88.5 0.25 8.5E-06 47.1 3.3 24 227-250 28-51 (199)
463 2y8e_A RAB-protein 6, GH09086P 88.5 0.24 8.1E-06 45.6 3.1 22 229-250 16-37 (179)
464 1z0f_A RAB14, member RAS oncog 88.5 0.25 8.7E-06 45.4 3.2 23 229-251 17-39 (179)
465 4ag6_A VIRB4 ATPase, type IV s 88.4 0.43 1.5E-05 51.1 5.5 25 227-251 35-59 (392)
466 1knx_A Probable HPR(Ser) kinas 88.4 0.26 9E-06 51.7 3.6 29 227-256 147-175 (312)
467 2npi_A Protein CLP1; CLP1-PCF1 88.4 0.23 7.9E-06 54.9 3.4 25 227-251 138-162 (460)
468 1yrb_A ATP(GTP)binding protein 88.4 0.45 1.5E-05 47.4 5.2 32 228-259 15-48 (262)
469 1upt_A ARL1, ADP-ribosylation 88.4 0.29 9.9E-06 44.7 3.5 23 228-250 8-30 (171)
470 4dsu_A GTPase KRAS, isoform 2B 88.3 0.26 8.8E-06 45.9 3.2 23 229-251 6-28 (189)
471 3ch4_B Pmkase, phosphomevalona 88.3 0.24 8.1E-06 48.8 3.0 39 224-262 8-47 (202)
472 3a1s_A Iron(II) transport prot 88.3 0.46 1.6E-05 48.1 5.3 22 229-250 7-28 (258)
473 3clv_A RAB5 protein, putative; 88.3 0.3 1E-05 45.7 3.7 23 228-250 8-30 (208)
474 2fn4_A P23, RAS-related protei 88.3 0.25 8.5E-06 45.5 3.0 22 229-250 11-32 (181)
475 2a9k_A RAS-related protein RAL 88.2 0.27 9.2E-06 45.6 3.2 22 229-250 20-41 (187)
476 3t1o_A Gliding protein MGLA; G 88.2 0.27 9.2E-06 46.0 3.3 23 229-251 16-38 (198)
477 3con_A GTPase NRAS; structural 88.2 0.27 9.1E-06 46.2 3.2 23 229-251 23-45 (190)
478 4f4c_A Multidrug resistance pr 88.2 1 3.5E-05 56.1 9.4 24 228-251 1106-1129(1321)
479 2wjy_A Regulator of nonsense t 88.2 0.22 7.6E-06 58.9 3.2 22 229-250 373-394 (800)
480 2oil_A CATX-8, RAS-related pro 88.2 0.27 9.2E-06 46.3 3.3 22 229-250 27-48 (193)
481 2hf9_A Probable hydrogenase ni 88.1 0.58 2E-05 45.3 5.8 24 228-251 39-62 (226)
482 2efe_B Small GTP-binding prote 88.1 0.27 9.3E-06 45.4 3.2 22 229-250 14-35 (181)
483 4tmk_A Protein (thymidylate ki 88.0 0.28 9.7E-06 48.4 3.4 24 228-251 4-27 (213)
484 1m7b_A RND3/RHOE small GTP-bin 88.0 0.26 8.9E-06 46.2 3.1 22 229-250 9-30 (184)
485 1tq4_A IIGP1, interferon-induc 88.0 0.32 1.1E-05 53.0 4.1 23 229-251 71-93 (413)
486 1moz_A ARL1, ADP-ribosylation 87.9 0.28 9.4E-06 45.6 3.1 24 226-249 17-40 (183)
487 2bme_A RAB4A, RAS-related prot 87.9 0.27 9.3E-06 45.8 3.1 22 229-250 12-33 (186)
488 1dek_A Deoxynucleoside monopho 87.9 0.21 7.1E-06 50.5 2.4 27 229-255 3-29 (241)
489 2b6h_A ADP-ribosylation factor 87.8 0.34 1.1E-05 46.1 3.7 25 225-249 27-51 (192)
490 3nh6_A ATP-binding cassette SU 87.8 0.14 4.7E-06 53.7 1.0 27 226-252 79-105 (306)
491 3tw8_B RAS-related protein RAB 87.8 0.26 9E-06 45.4 2.9 22 229-250 11-32 (181)
492 3i5x_A ATP-dependent RNA helic 87.8 2.9 9.7E-05 46.6 11.9 17 227-243 111-127 (563)
493 3g5u_A MCG1178, multidrug resi 87.8 0.87 3E-05 56.6 8.3 24 228-251 417-440 (1284)
494 2qag_B Septin-6, protein NEDD5 87.7 0.3 1E-05 53.5 3.7 21 230-250 45-65 (427)
495 2cxx_A Probable GTP-binding pr 87.7 0.24 8.3E-06 46.2 2.6 22 229-250 3-24 (190)
496 4hlc_A DTMP kinase, thymidylat 87.6 0.45 1.5E-05 46.6 4.6 30 229-258 4-35 (205)
497 1gm5_A RECG; helicase, replica 87.6 1.6 5.4E-05 51.4 10.0 37 225-261 387-426 (780)
498 2g6b_A RAS-related protein RAB 87.6 0.31 1.1E-05 45.0 3.2 23 229-251 12-34 (180)
499 3kkq_A RAS-related protein M-R 87.5 0.31 1.1E-05 45.3 3.2 22 229-250 20-41 (183)
500 3b1v_A Ferrous iron uptake tra 87.5 0.54 1.8E-05 48.1 5.3 22 229-250 5-26 (272)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=7.8e-85 Score=729.00 Aligned_cols=435 Identities=50% Similarity=0.852 Sum_probs=386.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
.++++|+||+|++++++++++++.+++++..|..+|.+.|+|+||+||||||||++|+++|++++.||+.++++++.+.|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 344 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 344 (685)
.|.+..+++.+|..++...||||||||+|.++.+++. .......+++++|+.+|+++....+++||++||+++.||+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 9999999999999999999999999999999887753 2344567889999999999988889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
+++||||||+.|.+++|+.++|.+|++.|+++.....++|+..++..++|++|+||.++|++|+..|.+++...|+.+||
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 99999999999999999999999999999998877788999999999999999999999999999999988899999999
Q ss_pred HHHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCC-CccceEEecCCCCcccccHHHHHH
Q 005661 425 EYAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRG-MSLGMVAQLPDKDETSISRKQMLA 503 (685)
Q Consensus 425 ~~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg-~~~G~~~~~p~~~~~~~t~~~l~~ 503 (685)
..|++++++|.++++..+++++++.++|||+|||++++.+++..+++++||+||| +++|||+++|++|.+.+||.+|++
T Consensus 250 ~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~ 329 (476)
T 2ce7_A 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLD 329 (476)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHHHHH
T ss_pred HHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHHHHH
Confidence 9999999999888888899999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCC----------CCCCCHHHHHH
Q 005661 504 RLDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN----------GKSMSTETRLL 573 (685)
Q Consensus 504 ~i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~----------~~~~s~~~~~~ 573 (685)
+|++||||||||+++||+ +||||++||++||.+|+.||++||||+++|++.|...++ ...+|+++...
T Consensus 330 ~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 407 (476)
T 2ce7_A 330 KLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASK 407 (476)
T ss_dssp HHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHH
T ss_pred HHHHHHhHHHHHhhhcCC--CCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHH
Confidence 999999999999999995 899999999999999999999999999999998864321 25789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCHHHHHHHHHh
Q 005661 574 IEKEVRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQ 624 (685)
Q Consensus 574 id~eV~~ll~~a~~~a~~iL~~~~~~L~~lA~~Lle~etL~~~ei~~il~~ 624 (685)
||+||+++|+++|++|++||.+|++.|++||++|+++|||+++||.+|+.+
T Consensus 408 ~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 408 IDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999965
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-81 Score=705.49 Aligned_cols=433 Identities=50% Similarity=0.824 Sum_probs=408.3
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~ 268 (685)
++++|+||+|+++++.++++++.++.++..|..++.+.|+|+||+||||||||+||++||++++.+|+.++++++.+.++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccc
Q 005661 269 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 269 g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 345 (685)
|....+++.+|+.++...|||+||||||.++.++.. ....+..+++++++.+|+++.....+++|++||+|+.||++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 999999999999998888999999999999876653 23456678899999999999988899999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 425 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 425 (685)
++||||||++|.|++||.++|.+||+.|+++.....++++..++..++|++|+||+++|++|+..|.+++...|+++||.
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Confidence 99999999999999999999999999999887778889999999999999999999999999999998888899999999
Q ss_pred HHHHHHhcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCC-CCcccccHHHHHHH
Q 005661 426 YAKDKIMMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPD-KDETSISRKQMLAR 504 (685)
Q Consensus 426 ~A~~~v~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~-~~~~~~t~~~l~~~ 504 (685)
+|++++.++.++++..+++++++.++|||+|||++++++++.++|+|+||+|||+++||++ |. ++.+++||.+|+++
T Consensus 266 ~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~--p~q~~~~~~t~~~l~~~ 343 (499)
T 2dhr_A 266 EAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM--PRREDMLHWSRKRLLDQ 343 (499)
T ss_dssp HHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH--HHHTTCCCCCHHHHHHH
T ss_pred HHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc--cchhhhhccCHHHHHHH
Confidence 9999999998888888999999999999999999999999999999999999999999998 77 78899999999999
Q ss_pred HHHhhchHhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCCC-------CCCCCHHHHHHHHHH
Q 005661 505 LDVCMGGRVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDDN-------GKSMSTETRLLIEKE 577 (685)
Q Consensus 505 i~v~lgGraAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~~-------~~~~s~~~~~~id~e 577 (685)
|+++||||+||+++||+ +||||++||++||.+|+.||++||||+++|++.+...++ ...+|+++...||+|
T Consensus 344 i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 421 (499)
T 2dhr_A 344 IAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEA 421 (499)
T ss_dssp HHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHH
T ss_pred HHHHhhhHhHHHhhhcc--cCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHH
Confidence 99999999999999994 899999999999999999999999999999998864321 356899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCHHHHHHHHHhh
Q 005661 578 VRNFLDRAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQV 625 (685)
Q Consensus 578 V~~ll~~a~~~a~~iL~~~~~~L~~lA~~Lle~etL~~~ei~~il~~~ 625 (685)
|+++|++||++|++||.+|++.|++||++|||+|||+++||.+|+.+.
T Consensus 422 v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~ 469 (499)
T 2dhr_A 422 VRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGL 469 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999764
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-54 Score=472.03 Aligned_cols=301 Identities=34% Similarity=0.527 Sum_probs=260.4
Q ss_pred cCCccCCCCCCeEEEeccCcccHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccccCCC-------CCCCCCCC
Q 005661 122 KDGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQPS-------LESNTKFS 194 (685)
Q Consensus 122 ~~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~ 194 (685)
+..|++++.+|.|+|.+.+......+-.+.++ .+......--..++.+++|. ..|+++|+
T Consensus 82 ~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v-------------~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~ 148 (405)
T 4b4t_J 82 KKVLVKVQPEGKYIVDVAKDINVKDLKASQRV-------------CLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYD 148 (405)
T ss_dssp SCEEEEESSSCEEEECCCTTSCTTTCCSSCEE-------------EEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGG
T ss_pred CeEEEEeCCCCEEEEecccccCHhhCCCccee-------------eeecccceeeeecCcccCchhhhccccCCCCCCHH
Confidence 34678889999999987665444333222110 01100000000122233332 24789999
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhH
Q 005661 195 DVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGAR 273 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~ 273 (685)
||+|++++|++|++.|.+ +++|+.|.++|..+|+|+|||||||||||++|+|+|++++++|+.++++++..+|+|++++
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~ 228 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSR 228 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCC
Q 005661 274 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPG 350 (685)
Q Consensus 274 ~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpg 350 (685)
.++.+|..|+..+||||||||||+++++|... ......+++++||.+||++....+|+||+|||+|+.|||||+|||
T Consensus 229 ~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpG 308 (405)
T 4b4t_J 229 MVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPG 308 (405)
T ss_dssp HHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTT
T ss_pred HHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCC
Confidence 99999999999999999999999999887543 245678899999999999999999999999999999999999999
Q ss_pred CcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 005661 351 RFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDK 430 (685)
Q Consensus 351 RFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~ 430 (685)
|||++|+||+||.++|.+||+.|+++.....++|+..||..|+||||+||.++|++|++.|.++++..|+++||+.|+++
T Consensus 309 RfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 309 RIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred Hhccc
Q 005661 431 IMMGS 435 (685)
Q Consensus 431 v~~g~ 435 (685)
++...
T Consensus 389 v~~~~ 393 (405)
T 4b4t_J 389 VMNKN 393 (405)
T ss_dssp HHHHH
T ss_pred HhCcc
Confidence 87643
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-54 Score=478.46 Aligned_cols=352 Identities=34% Similarity=0.563 Sum_probs=279.7
Q ss_pred CHHHHHHHHHHHHHhcccchhHHHHHHhhcccccccc-hhhccccccccccCCCc---------cCCccCCCCCCeEEEe
Q 005661 68 NQSALSEYVKALVKVDRLDDSELLKTLQKGIANSARD-EESIGGISAFKNVGKPT---------KDGVLGTASAPIHMVA 137 (685)
Q Consensus 68 ~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~p~~~v~ 137 (685)
...++.+|.++|.++.+++. .++.++.......+. ......+.+++++|..+ ...|+.+..+|.|+|.
T Consensus 53 ~~~~~~~~~~~l~~~~~~e~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~ 130 (437)
T 4b4t_L 53 HNKALNQFKRKLLEHRRYDD--QLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVG 130 (437)
T ss_dssp --------------CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEe
Confidence 34677899999988877765 345555444333222 33344566777766543 3467888899999998
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccccCCC-------CCCCCCCCcCCCcHHHHHHHHHHH
Q 005661 138 AEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQPS-------LESNTKFSDVKGVDEAKQELEEIV 210 (685)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~dV~G~de~k~~L~e~v 210 (685)
+.+......+-.+.++ .+......-.-.++.+++|. ..|+++|+||+|++++|++|++.|
T Consensus 131 ~~~~~~~~~l~~g~~v-------------~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v 197 (437)
T 4b4t_L 131 VRNSVDRSKLKKGVRV-------------TLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVI 197 (437)
T ss_dssp BCSSSCTTSCCTTCEE-------------EECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHH
T ss_pred cccccCHhhcCCCcee-------------eEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHH
Confidence 7665444333222111 11111000000122333332 257899999999999999999999
Q ss_pred HH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeE
Q 005661 211 HY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCI 289 (685)
Q Consensus 211 ~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~I 289 (685)
.+ +++|+.|..+|..+|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+.++|||
T Consensus 198 ~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~I 277 (437)
T 4b4t_L 198 ELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCI 277 (437)
T ss_dssp HHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEE
T ss_pred HHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCce
Confidence 98 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHH
Q 005661 290 IFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGR 366 (685)
Q Consensus 290 LfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR 366 (685)
|||||+|+++.+|... ......+++++||.+||++....+|+||+|||+|+.|||||+||||||++|+||+||.++|
T Consensus 278 ifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R 357 (437)
T 4b4t_L 278 IFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357 (437)
T ss_dssp EEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHH
T ss_pred eeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHH
Confidence 9999999999888543 3456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005661 367 RQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 434 (685)
Q Consensus 367 ~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g 434 (685)
.+||+.|+++.....++|+..+|..|+||||+||.++|++|++.|.++++..|+++||..|++++...
T Consensus 358 ~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 358 LEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999888999999999999999999999999999999999999999999999999998653
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-53 Score=464.31 Aligned_cols=301 Identities=35% Similarity=0.553 Sum_probs=262.0
Q ss_pred cCCccCCCCCCeEEEeccCcccHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccccCC-------CCCCCCCCC
Q 005661 122 KDGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQP-------SLESNTKFS 194 (685)
Q Consensus 122 ~~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~f~ 194 (685)
+..|+.++.+|.|+|.+.+......+..+.++ .+......-.-.++.+++| ...++++|+
T Consensus 116 ~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v-------------~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~ 182 (437)
T 4b4t_I 116 DHAIVTSPTMPDYYVSILSFVDKELLEPGCSV-------------LLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYS 182 (437)
T ss_dssp SEEEEECSSSCCCEEECCTTSCGGGCCTTCEE-------------EECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGG
T ss_pred CEEEEEcCCCCEEEEecccccCHhHccCCcEE-------------EEeccCccceeecCCccCCcceeeeeccCCCCcce
Confidence 34788899999999988776555443332211 1111100000011222222 225789999
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhH
Q 005661 195 DVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGAR 273 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~ 273 (685)
||+|++++|++|++.|.+ +++|+.|..+|..+|+|||||||||||||++|+|+|++++.+|+.++++++..+|+|++++
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek 262 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPR 262 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHH
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCC
Q 005661 274 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPG 350 (685)
Q Consensus 274 ~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpg 350 (685)
.++.+|..|+..+||||||||+|+++.+|... ......+++++||.+||++....+|+||+|||+|+.||+||+|||
T Consensus 263 ~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpG 342 (437)
T 4b4t_I 263 LCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPG 342 (437)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTT
T ss_pred HHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCC
Confidence 99999999999999999999999999988543 334678899999999999999999999999999999999999999
Q ss_pred CcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 005661 351 RFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDK 430 (685)
Q Consensus 351 RFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~ 430 (685)
|||++|+|++||.++|.+||+.|+++.....++|+..||..|+||||+||.++|++|++.|.++++..|+++||..|+++
T Consensus 343 RfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 343 RIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp TEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred ceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred Hhccc
Q 005661 431 IMMGS 435 (685)
Q Consensus 431 v~~g~ 435 (685)
+..+.
T Consensus 423 v~~~~ 427 (437)
T 4b4t_I 423 VMKNK 427 (437)
T ss_dssp HHHHH
T ss_pred HhCCC
Confidence 87654
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-53 Score=463.43 Aligned_cols=303 Identities=35% Similarity=0.560 Sum_probs=265.7
Q ss_pred CCccCCCCCCeEEEeccCcccHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccccCCC-------CCCCCCCCc
Q 005661 123 DGVLGTASAPIHMVAAEGGHFKEQLWRTIRTIALGFLLISGVGALIEDRGISKGLGLHEEVQPS-------LESNTKFSD 195 (685)
Q Consensus 123 ~~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~d 195 (685)
..|+..+++|.|||.+........+-.++++. +......--..++.+++|. ..|+++|+|
T Consensus 144 ~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~-------------l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~D 210 (467)
T 4b4t_H 144 KYVINLKQIAKFVVGLGERVSPTDIEEGMRVG-------------VDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSD 210 (467)
T ss_dssp CCEEEETTSCCBCCCCCTTCCSSSCCTTCEEC-------------SCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSS
T ss_pred cEEEEecCCCeEEEecCCcCCHHHCCCCCEEE-------------EccCcceeeecCCCccCCccceeeecCCCCCCHHH
Confidence 46888899999999887665555544443311 0100000001233344433 257899999
Q ss_pred CCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHH
Q 005661 196 VKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR 274 (685)
Q Consensus 196 V~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ 274 (685)
|+|++++|++|++.|.+ +++|+.|.++|..+|+|||||||||||||++|+|+|++++++|+.++++++.++|+|++++.
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ 290 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARM 290 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHH
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCC
Q 005661 275 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGR 351 (685)
Q Consensus 275 ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgR 351 (685)
++.+|..|+..+||||||||+|+++.+|... ......++++++|.+||++....+|+||+|||+|+.||+||+||||
T Consensus 291 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR 370 (467)
T 4b4t_H 291 VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGR 370 (467)
T ss_dssp HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTT
T ss_pred HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcccc
Confidence 9999999999999999999999999888543 3356778899999999999999999999999999999999999999
Q ss_pred cccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 352 FDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 352 Fd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
||++|+|++||.++|.+||+.|+++.....++|+..||+.|+||||+||.++|++|++.|.++++..|+++||..|++++
T Consensus 371 FD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 371 IDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp CCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred hcccccc
Q 005661 432 MMGSERK 438 (685)
Q Consensus 432 ~~g~~~~ 438 (685)
+.|.++.
T Consensus 451 ~~g~~k~ 457 (467)
T 4b4t_H 451 ISGYKKF 457 (467)
T ss_dssp HHHHCC-
T ss_pred hcCcccc
Confidence 9887654
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-51 Score=447.42 Aligned_cols=246 Identities=39% Similarity=0.604 Sum_probs=234.6
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.|+++|+||+|++++|++|++.+.+ +++|+.|..+|..+|+|+|||||||||||++|+|+|++++++|+.++++++..+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 5789999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
|+|.+++.++.+|..|+..+||||||||+|+++.+|... ......+++++||.+|||+....+|+||+|||+|+.||
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 999999999999999999999999999999999887432 34467889999999999999999999999999999999
Q ss_pred ccccCCCCcccccccC-CCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Q 005661 344 KALVRPGRFDRHIVVP-NPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMA 422 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~-~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~e 422 (685)
|+|+||||||++|+|| +|+.++|..||+.|+++.....++|+..||..|+||||+||.++|++|++.|.++++..|+++
T Consensus 326 ~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~ 405 (428)
T 4b4t_K 326 PALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQS 405 (428)
T ss_dssp HHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred hhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
Confidence 9999999999999996 899999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 005661 423 DLEYAKDKIMM 433 (685)
Q Consensus 423 dl~~A~~~v~~ 433 (685)
||++|+.+++.
T Consensus 406 d~~~A~~~~~~ 416 (428)
T 4b4t_K 406 DLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhhC
Confidence 99999988754
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-50 Score=446.08 Aligned_cols=247 Identities=38% Similarity=0.633 Sum_probs=236.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++|++|++.+.+ +++|+.|.++|..+|+|+|||||||||||++|+|+|++++.+|+.++++++..+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 5789999999999999999998877 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc---hHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD---QQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~---~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
|+|.+++.++.+|..|+..+||||||||+|+++.+|.... .....+++++||.+||++...++|+||+|||+|+.||
T Consensus 255 ~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 9999999999999999999999999999999999886543 3457788999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 423 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 423 (685)
|||+||||||++|+||+||.++|.+||+.|+++.....++|+..||+.|+||||+||.++|++|++.|.++++..|+++|
T Consensus 335 ~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~D 414 (434)
T 4b4t_M 335 PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHED 414 (434)
T ss_dssp TTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHH
T ss_pred HhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 005661 424 LEYAKDKIMMG 434 (685)
Q Consensus 424 l~~A~~~v~~g 434 (685)
|.+|++++.+.
T Consensus 415 f~~Al~~v~~~ 425 (434)
T 4b4t_M 415 FVEGISEVQAR 425 (434)
T ss_dssp HHHHHHSCSSS
T ss_pred HHHHHHHHhCC
Confidence 99999987653
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2e-49 Score=403.25 Aligned_cols=195 Identities=34% Similarity=0.548 Sum_probs=160.6
Q ss_pred hcccccccccccchhhhhhhHHHhhhHHHhhhcCCCCccceEEEeeCCCccceEEecCCCCcccccHHHHHHHHHHhhch
Q 005661 432 MMGSERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMSLGMVAQLPDKDETSISRKQMLARLDVCMGG 511 (685)
Q Consensus 432 ~~g~~~~~~~~s~~~~~~~A~hEaGhA~va~~~~~~~~v~kvti~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~v~lgG 511 (685)
++|.++++..+++++|+++||||||||||++++++++||+||||+|||+++|||+++|++|.+.+||.+|+++|+|+|||
T Consensus 1 ~~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgG 80 (238)
T 2di4_A 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGG 80 (238)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHH
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhH
Confidence 36888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcCCCCccCCchHHHHHHHHHHHHHHHHcCCCCCccceeeccCC--------CCCCCCHHHHHHHHHHHHHHHH
Q 005661 512 RVAEELIFGENEVTSGASSDLQQATKLARAMVTKYGMSKEVGVVTHNYDD--------NGKSMSTETRLLIEKEVRNFLD 583 (685)
Q Consensus 512 raAEel~~G~~~~tsGa~~Dl~~AT~lA~~mv~~~Gms~~~G~~~~~~~~--------~~~~~s~~~~~~id~eV~~ll~ 583 (685)
||||+++||++++||||++||++||.||+.||++||||+++|+++|...+ ..+.+|+++...||.||+++|+
T Consensus 81 RaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~ 160 (238)
T 2di4_A 81 RAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIIT 160 (238)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHH
Confidence 99999999655699999999999999999999999999999999886321 2367999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHccCCCHHHHHHHHHhhh
Q 005661 584 RAYNNAKTILTMHSKELHALANALLEHETLSGSQIKALLAQVN 626 (685)
Q Consensus 584 ~a~~~a~~iL~~~~~~L~~lA~~Lle~etL~~~ei~~il~~~~ 626 (685)
+||++|++||.+|++.|+.||++||++|||+++||.+|+..+.
T Consensus 161 ~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~ 203 (238)
T 2di4_A 161 EQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYG 203 (238)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999998764
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.2e-46 Score=434.48 Aligned_cols=248 Identities=42% Similarity=0.640 Sum_probs=233.5
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++|++|++++.+ |++|+.|..+|.++|+|||||||||||||+|||++|++++.+|+.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4679999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
|.|+++.+++.+|..|+.++||||||||||.|+.+|.........+++++|+..||++..+.+|+||++||+++.||++|
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHH
Confidence 99999999999999999999999999999999998877766667889999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-----------
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG----------- 415 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~----------- 415 (685)
+||||||++|+|+.||.++|.+||+.|+++.....++|+..||..|.||+|+||.++|++|++.|.++.
T Consensus 358 rR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~ 437 (806)
T 3cf2_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (806)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCC
T ss_pred hCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999999999999999999999999988999999999999999999999999999999987652
Q ss_pred ------CCccCHHHHHHHHHHHhccc
Q 005661 416 ------AKAVTMADLEYAKDKIMMGS 435 (685)
Q Consensus 416 ------~~~It~edl~~A~~~v~~g~ 435 (685)
...|+.+||..|+..+.+..
T Consensus 438 ~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 438 DAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp SHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred chhhhccceeeHHHHHHHHHhCCCcc
Confidence 12478899999988776543
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.5e-44 Score=423.90 Aligned_cols=246 Identities=36% Similarity=0.648 Sum_probs=192.6
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++|++|++.+.+ +++|+.|.++|..+|+|+|||||||||||++|+++|++++.+|+.++++++..+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 4689999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
|+|++++.++.+|..|+..+||||||||||+++.+|... ......+++++||.+||++....+|+||+|||+|+.||
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSC
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCC
Confidence 999999999999999999999999999999999888542 34456789999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC-------
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA------- 416 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~------- 416 (685)
++++||||||++|+||+||.++|.+||+.|+++.....++|+..||+.|+||||+||.++|++|++.|.++.-
T Consensus 631 ~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~ 710 (806)
T 3cf2_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710 (806)
T ss_dssp HHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC------
T ss_pred HhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999998888899999999999999999999999999999987521
Q ss_pred ------------------CccCHHHHHHHHHHHhc
Q 005661 417 ------------------KAVTMADLEYAKDKIMM 433 (685)
Q Consensus 417 ------------------~~It~edl~~A~~~v~~ 433 (685)
..|+++||++|+.++.+
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 745 (806)
T 3cf2_A 711 RERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp -----------------CCC----CCTTTC-----
T ss_pred hhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence 24777778777776643
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.6e-38 Score=326.75 Aligned_cols=248 Identities=66% Similarity=1.035 Sum_probs=225.7
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
.++.+|+||+|++++++++.+++.++.+++.|..++...|+++||+||||||||++|++++++++.||+.++++++...+
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 344 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 344 (685)
.|.+...++.+|+.+....|+++||||+|.+...+... ........+++++..++++....+++||++||.++.+|+
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~ 165 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCH
Confidence 88888999999999998899999999999998776532 234456788999999999888889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
+++|+|||++.+.+++|+.++|.+|++.++++.....++++..++..++||+++||.++|++|...|.+++...|+.+||
T Consensus 166 ~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~ 245 (257)
T 1lv7_A 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEF 245 (257)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHH
Confidence 99999999999999999999999999999988877788889999999999999999999999999999999899999999
Q ss_pred HHHHHHHhccc
Q 005661 425 EYAKDKIMMGS 435 (685)
Q Consensus 425 ~~A~~~v~~g~ 435 (685)
..|++++..|.
T Consensus 246 ~~a~~~~~~~~ 256 (257)
T 1lv7_A 246 EKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhcCC
Confidence 99999998764
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4e-39 Score=336.61 Aligned_cols=246 Identities=37% Similarity=0.619 Sum_probs=208.9
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHH-HhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVH-YLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~-~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++|++|++.+. .+.+++.|..++..+|+|++|+||||||||+|++++|++++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 367899999999999999998655 4999999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
+.+...+.++.+|+.++...||++|+||+|.++..+.........+.+++++.+|++......++++++||+|+.||+++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 88988999999999998899999999999998765543222233467899999999998888999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhh---hcccCcccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHc-------
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSK---VLKADDVDLMIIARGTP--GFSGADLANLVNIAALKAAMD------- 414 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~---~~~~~~vdl~~la~~t~--G~sgadI~~lv~~A~~~A~~~------- 414 (685)
+||||||+.|++++|+.++|.+||+.++++ .....++|+..++..+. ||||+||.++|++|++.|.++
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~ 243 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999964 34567899999999754 999999999999999998864
Q ss_pred ----CCCccCHHHHHHHHHHHhc
Q 005661 415 ----GAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 415 ----~~~~It~edl~~A~~~v~~ 433 (685)
+...|+++||+.|++++.+
T Consensus 244 ~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 244 GNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ------CCBCHHHHHHHHTTCCC
T ss_pred cccccCCeecHHHHHHHHHHhcC
Confidence 2346999999999988754
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=323.86 Aligned_cols=255 Identities=48% Similarity=0.820 Sum_probs=205.4
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~ 268 (685)
++++|+||+|++++++.+++++.++.+++.|..+|...|+++||+||||||||++|+++|++++.+++.++++++...+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc----hHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcc
Q 005661 269 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD----QQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 344 (685)
Q Consensus 269 g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~----~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 344 (685)
+.+...++.+|..+....|+||||||+|.+..++.... .......++.++..++++....+++||++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88889999999999999999999999999987664321 23445678899999998877889999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc--HHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD--LMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMA 422 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd--l~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~e 422 (685)
+++|+|||++.+++++|+.++|.+||++++.+.....+.+ ...++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999999999998775544433 46799999999999999999999999998888999999
Q ss_pred HHHHHHHHHhccccccccccc
Q 005661 423 DLEYAKDKIMMGSERKSAVIS 443 (685)
Q Consensus 423 dl~~A~~~v~~g~~~~~~~~s 443 (685)
||..|+.++..+..++...++
T Consensus 241 d~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp CHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhccChhhhhHhhc
Confidence 999999999888776655444
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=6.4e-38 Score=331.09 Aligned_cols=245 Identities=36% Similarity=0.654 Sum_probs=220.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++++.|++.+.+ +.+++.|..+|...++++||+||||||||++|+++|++++.+|+.++|+++...
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
+.|.....++.+|..++...||||||||+|.+...+... ......+.+++||..|+++....+++||++||+++.||
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 999999999999999999999999999999997544321 11223456788999999988888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC--------
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG-------- 415 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~-------- 415 (685)
++++|||||++.+++++|+.++|.+||++++++.....++++..++..+.||+|+||.++|++|+..|.++.
T Consensus 169 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~ 248 (301)
T 3cf0_A 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 248 (301)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999998877788999999999999999999999999999886532
Q ss_pred -----------------CCccCHHHHHHHHHHHh
Q 005661 416 -----------------AKAVTMADLEYAKDKIM 432 (685)
Q Consensus 416 -----------------~~~It~edl~~A~~~v~ 432 (685)
...|+.+||..|+.++-
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 249 RERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp -----------------CCCBCHHHHHHHHTTCC
T ss_pred hhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 13588999999987653
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-36 Score=315.28 Aligned_cols=246 Identities=44% Similarity=0.721 Sum_probs=230.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++++.|.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 4678999999999999999999877 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
+.|.....++.+|..++...|+||||||+|.+..++... ........+..++..++++....+++||+|||.++.+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 999999999999999999999999999999998776543 24456788899999999888888999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMAD 423 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~ed 423 (685)
++++|++||++.+.++.|+.++|.+||+.++++.....++++..++..+.|++++||+++|+.|...|.+++...|+.+|
T Consensus 171 ~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d 250 (285)
T 3h4m_A 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD 250 (285)
T ss_dssp HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHH
Confidence 99999999999999999999999999999998887778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 005661 424 LEYAKDKIMM 433 (685)
Q Consensus 424 l~~A~~~v~~ 433 (685)
|.+|+.++..
T Consensus 251 ~~~al~~~~~ 260 (285)
T 3h4m_A 251 FRKAVEKIME 260 (285)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=324.39 Aligned_cols=224 Identities=38% Similarity=0.654 Sum_probs=204.7
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-CCCEEEeeccchhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSGSEFEE 265 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-~~~fi~vs~s~l~~ 265 (685)
.++++|+||+|++++|+.|++.+.+ ++.++.|.. +..+|+|+||+||||||||++|+++|+++ +.+|+.++++++..
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4678999999999999999999887 888888874 45678999999999999999999999999 89999999999999
Q ss_pred hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEEecCCcCcCcc
Q 005661 266 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDK 344 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~p~~LD~ 344 (685)
.|.|.....++.+|..++...||||||||+|.+..++.........+.+++++..|+++. ...+++||++||+|+.+|+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 999999999999999999999999999999999988877666677888999999999986 3678999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
+++| ||++.+++++|+.++|.+||+.++++.... .+.++..|++.|.||+|+||.++|++|++.|.++
T Consensus 165 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 165 AIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999876543 5678899999999999999999999999888764
No 18
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.8e-35 Score=303.55 Aligned_cols=241 Identities=59% Similarity=0.963 Sum_probs=218.7
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
.++++|+||+|.++++.++++++..+.++..+..++...|+|++|+||||||||+|++++++.++.+++.+++.++...+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 46789999999999999999999999899999999999999999999999999999999999999999999999988877
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC---CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP---KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDK 344 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~---~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~ 344 (685)
.+.....++.+|+.+....|+++||||+|.++..+.. .......+.+++++..|++......++++++||.|+.+|+
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~ 169 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 169 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCG
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCH
Confidence 7888888999999998788999999999999876543 1234566788999999999888888999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
+++|++||++.++++.|+.++|.+||+.++++.....++++..++..++|++|+||.++|++|+..|.+++...|+.+||
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl 249 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 249 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999988777788899999999999999999999999999999988889999999
Q ss_pred HHHH
Q 005661 425 EYAK 428 (685)
Q Consensus 425 ~~A~ 428 (685)
++|+
T Consensus 250 ~~a~ 253 (254)
T 1ixz_A 250 EEAA 253 (254)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.8e-36 Score=322.86 Aligned_cols=243 Identities=35% Similarity=0.580 Sum_probs=214.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++|+.|++.+.+ +..++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 4678999999999999999998877 778877765 66788999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEEecCCcCcCccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~p~~LD~a 345 (685)
|.|.....++.+|..++...|+||||||||.+..++.........+++++++..|+++. ...+++||++||+++.||++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~a 170 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 170 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHH
Confidence 99999999999999999999999999999999887765555556778899999999885 56789999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC--------
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA-------- 416 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~-------- 416 (685)
++| ||+..+++++|+.++|.+||+.++.+.... .+.++..|+..+.||+|+||.++|++|...|.++..
T Consensus 171 l~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 171 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999 999999999999999999999999876543 567789999999999999999999999988877521
Q ss_pred -----------------------------------CccCHHHHHHHHHHHhc
Q 005661 417 -----------------------------------KAVTMADLEYAKDKIMM 433 (685)
Q Consensus 417 -----------------------------------~~It~edl~~A~~~v~~ 433 (685)
..|+++||..|+..+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 300 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 300 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCC
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCC
Confidence 34999999999997644
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3.1e-35 Score=330.39 Aligned_cols=245 Identities=42% Similarity=0.651 Sum_probs=227.9
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
.+++|++|+|++++++.|++.+.. +++++.|..+|...|+++||+||||||||++|++++++++.+|+.++|+++...+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 467899999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccccc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV 347 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLl 347 (685)
.|.....++.+|..+....||||||||||.+..++.........+++++|+..|+++....+++||++||+++.||++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 99999999999999999999999999999999888766666677889999999999888889999999999999999999
Q ss_pred CCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC----------
Q 005661 348 RPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK---------- 417 (685)
Q Consensus 348 RpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~---------- 417 (685)
|+|||++.|++++|+.++|.+||+.++++.....++++..++..+.||+++||.++|++|+..|.++...
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~ 438 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCC
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999888888899999999999999999999999999999887543
Q ss_pred -------ccCHHHHHHHHHHHhc
Q 005661 418 -------AVTMADLEYAKDKIMM 433 (685)
Q Consensus 418 -------~It~edl~~A~~~v~~ 433 (685)
.|+++||..|+..+.+
T Consensus 439 ~~~~~~~~vt~edf~~Al~~~~p 461 (489)
T 3hu3_A 439 AEVMNSLAVTMDDFRWALSQSNP 461 (489)
T ss_dssp HHHHHHCCBCHHHHHHHHTSHHH
T ss_pred hhhcccCcCCHHHHHHHHHhCCc
Confidence 4788899988876543
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.8e-35 Score=319.85 Aligned_cols=243 Identities=35% Similarity=0.583 Sum_probs=209.2
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++++.|++.+.+ ++.++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 4578999999999999999998877 788888876 67788999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCCEEEEEecCCcCcCccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-NEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~p~~LD~a 345 (685)
|.|.....++.+|..++...|+||||||+|.+...+.........+++++|+..|+++.. ..+++||++||+++.||++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 999999999999999999999999999999998877655556667888999999998754 5789999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-cCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC---------
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG--------- 415 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~-~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~--------- 415 (685)
++| ||++.+++++|+.++|.+||++++.+... ..+.++..|++.+.||+|+||.++|++|++.|.++.
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 281 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999 99999999999999999999999987654 256788999999999999999999999999988751
Q ss_pred ----------------------------------CCccCHHHHHHHHHHHhc
Q 005661 416 ----------------------------------AKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 416 ----------------------------------~~~It~edl~~A~~~v~~ 433 (685)
...|+++||..|+.++.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~p 333 (355)
T 2qp9_X 282 STEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 333 (355)
T ss_dssp CC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCC
T ss_pred ccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCC
Confidence 124999999999998754
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=3.6e-34 Score=298.38 Aligned_cols=240 Identities=59% Similarity=0.967 Sum_probs=218.5
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~ 268 (685)
++++|+||+|.++++.++++++..+.++..+..++...|+|++|+||||||||+|++++++.++.+++.+++.++...+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccc
Q 005661 269 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 269 g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a 345 (685)
+.....++.+|+.+....|+++||||+|.++..+... ........+++++.+|++......++++++||.|+.||++
T Consensus 115 ~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~ 194 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194 (278)
T ss_dssp THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHh
Confidence 8778889999999988889999999999998665421 2345677889999999998887889999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 425 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 425 (685)
++|++||++.+++++|+.++|.+||+.++++.....++++..++..++|++++||+++|++|...|.+++...|+.+||+
T Consensus 195 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~ 274 (278)
T 1iy2_A 195 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 274 (278)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHH
T ss_pred HcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Confidence 99999999999999999999999999999887777888999999999999999999999999999998888899999999
Q ss_pred HHH
Q 005661 426 YAK 428 (685)
Q Consensus 426 ~A~ 428 (685)
+|+
T Consensus 275 ~a~ 277 (278)
T 1iy2_A 275 EAA 277 (278)
T ss_dssp HHT
T ss_pred HHh
Confidence 875
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=7e-37 Score=315.88 Aligned_cols=248 Identities=55% Similarity=0.871 Sum_probs=217.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
.++++|+||+|.+++++.|++++.++..++.|..++...|+++||+||||||||++|+++|++++.||+.++++++...+
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc----hHHHHHHHHHHHHHhhccccC-CCEEEEEecCCcCcC
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD----QQYMKMTLNQLLVELDGFKQN-EGIIVIAATNFPESL 342 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~----~~~~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~p~~L 342 (685)
.|.+...++.+|..+....|+||||||+|.+..++.... .....+.+++|+..++++... .+++||++||.++.+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 888888888999999998999999999999987653211 111234567788888876543 459999999999999
Q ss_pred cccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Q 005661 343 DKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMA 422 (685)
Q Consensus 343 D~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~e 422 (685)
|++++|+|||+..+++++|+.++|.+||+.++++.....++++..++..+.|++|+||+++|++|...|..++...|+.+
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~ 244 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQ 244 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHH
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHH
Confidence 99999999999999999999999999999999887777788889999999999999999999999999988888899999
Q ss_pred HHHHHHHHHhccc
Q 005661 423 DLEYAKDKIMMGS 435 (685)
Q Consensus 423 dl~~A~~~v~~g~ 435 (685)
|+..|+.++.+..
T Consensus 245 ~~~~a~~~~~~~~ 257 (268)
T 2r62_A 245 HLKEAVERGIAGL 257 (268)
T ss_dssp HHHTSCTTCCCCC
T ss_pred HHHHHHHHHhhcc
Confidence 9999987765543
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.8e-34 Score=319.41 Aligned_cols=224 Identities=38% Similarity=0.649 Sum_probs=194.1
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-CCCEEEeeccchhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCSGSEFEE 265 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-~~~fi~vs~s~l~~ 265 (685)
.++++|+||+|++++++.|++.+.+ ++.++.|.. +..+|+++||+||||||||++|+++|+++ +.+|+.++++++..
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 4678999999999999999998876 788887764 35678999999999999999999999999 89999999999999
Q ss_pred hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-CCCEEEEEecCCcCcCcc
Q 005661 266 MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-NEGIIVIAATNFPESLDK 344 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~p~~LD~ 344 (685)
.|.|.....++.+|..++...|+||||||||.+...+.........+++++||..|+++.. ..+++||++||+|+.||+
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~ 286 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCH
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCH
Confidence 9999999999999999999999999999999998887766666677889999999998763 678999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-cCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-ADDVDLMIIARGTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~-~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
+++| ||++.+++++|+.++|.+||+.++.+... ..+.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 287 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 287 AIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999987644 25678899999999999999999999999988764
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-32 Score=293.20 Aligned_cols=242 Identities=35% Similarity=0.597 Sum_probs=209.1
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
++++|+||+|++++++.|++.+.+ +..++.|...+ ..++++||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 568899999999999999999887 78888777654 6789999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCCEEEEEecCCcCcCccc
Q 005661 268 VGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ--NEGIIVIAATNFPESLDKA 345 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~--~~~ViVIaaTN~p~~LD~a 345 (685)
.|.....++.+|..++...|+||||||||.+...+.........+.+++++..+++... ..+++||++||.++.+|++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 237 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHH
Confidence 99999999999999999999999999999998877665556677888999999998653 4689999999999999999
Q ss_pred ccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc----------
Q 005661 346 LVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD---------- 414 (685)
Q Consensus 346 LlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~---------- 414 (685)
++| ||+..+++++|+.++|.+|++.++...... .+.++..++..+.||+++||.++|+.|...+.++
T Consensus 238 l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~ 315 (357)
T 3d8b_A 238 ARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATIT 315 (357)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------
T ss_pred HHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 999 999999999999999999999998765332 3456788999999999999999999999888874
Q ss_pred --CCCccCHHHHHHHHHHHhc
Q 005661 415 --GAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 415 --~~~~It~edl~~A~~~v~~ 433 (685)
....|+.+||..|+.++.+
T Consensus 316 ~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 316 PDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp ---CCCBCHHHHHHHHHHHGG
T ss_pred ccccCCcCHHHHHHHHHhcCC
Confidence 2357999999999998865
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-32 Score=287.35 Aligned_cols=241 Identities=37% Similarity=0.598 Sum_probs=205.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++++.|.+.+.. +.+++.|..++ ..++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4678999999999999999998876 77788777654 467899999999999999999999999999999999999988
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC---CCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN---EGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~---~~ViVIaaTN~p~~LD 343 (685)
+.|.+...++.+|..+....|+||||||+|.+...+............+.++..++++... .+++||++||+++.+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 8888889999999999999999999999999988775544334456778888888877553 5799999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC-------
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG------- 415 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~------- 415 (685)
++++| ||+..+++++|+.++|..|++.++.+.... .+.++..++..+.|++++||.++|++|...+.++.
T Consensus 174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~ 251 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC 251 (297)
T ss_dssp HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999 999999999999999999999999875432 34457789999999999999999999999988764
Q ss_pred -----CCccCHHHHHHHHHHH
Q 005661 416 -----AKAVTMADLEYAKDKI 431 (685)
Q Consensus 416 -----~~~It~edl~~A~~~v 431 (685)
...|+.+||..|+.++
T Consensus 252 ~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 252 LDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp --CCCCCCCCHHHHHHHTTSC
T ss_pred ccccccCCcCHHHHHHHHHHc
Confidence 2579999999998754
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=289.98 Aligned_cols=242 Identities=36% Similarity=0.596 Sum_probs=199.4
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++++.|.+++.. +..++.|..++ ..++++||+||||||||++|+++|.+++.+|+.++|+++...
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 4578999999999999999998877 66777777665 457899999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc--CCCEEEEEecCCcCcCcc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ--NEGIIVIAATNFPESLDK 344 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~--~~~ViVIaaTN~p~~LD~ 344 (685)
|.|.....++.+|..++...|+||||||||.++..+.........+.++.|+..++++.. ..+++||++||+++.||+
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~ 267 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDE 267 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCH
Confidence 999999999999999999999999999999998877655555567788899999998765 467999999999999999
Q ss_pred cccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHc---------
Q 005661 345 ALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMD--------- 414 (685)
Q Consensus 345 aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~--------- 414 (685)
+++| ||+..++++.|+.++|.+||+.++...... .+.++..++..+.|+++++|..+|+.|...+.++
T Consensus 268 ~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~ 345 (389)
T 3vfd_A 268 AVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNM 345 (389)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CC
T ss_pred HHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 9999 999999999999999999999998764322 3346778999999999999999999999998876
Q ss_pred ---CCCccCHHHHHHHHHHHh
Q 005661 415 ---GAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 415 ---~~~~It~edl~~A~~~v~ 432 (685)
....|+.+||..++.++.
T Consensus 346 ~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 346 SASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp SSSCCCCCCHHHHHHHHHHCC
T ss_pred chhhcCCcCHHHHHHHHHHcC
Confidence 345799999999998753
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=8.3e-34 Score=336.53 Aligned_cols=228 Identities=38% Similarity=0.704 Sum_probs=204.5
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+|++|++++|+.|.+++.+ +..++.|..++...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 4678999999999999999999887 788888999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC---chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK---DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
|+|.....++.+|+.++...||||||||||.++..+... ......+++++||..|+++....+++||+|||+++.||
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 999999999999999999999999999999998877543 23456788999999999998889999999999999999
Q ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005661 344 KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 415 (685)
Q Consensus 344 ~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 415 (685)
++++|||||++.|+|++|+.++|.+||+.++++.....++++..+++.+.||||+||.++|++|...|.++.
T Consensus 631 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888999999999999999999999999999998765
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.3e-30 Score=309.16 Aligned_cols=230 Identities=43% Similarity=0.662 Sum_probs=214.6
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
.++++|+||+|++++++.|++++.. +.+++.|..++...+.++||+||||||||++|+++|++++.+|+.+++.++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4578999999999999999999988 999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 267 FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
+.+.....++.+|+.+....|+++||||+|.+..++.........+.+.+|+..++++....++++|++||+++.+|+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al 357 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHH
Confidence 99999999999999999999999999999999987766555666788899999999998889999999999999999999
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAK 417 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~ 417 (685)
.|++||++.+.++.|+.++|.+||+.++.+.....+.++..++..+.|++++++..+|++|+..+.++...
T Consensus 358 ~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~ 428 (806)
T 1ypw_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428 (806)
T ss_dssp TSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999888888889999999999999999999999999988775433
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=8.4e-31 Score=275.95 Aligned_cols=227 Identities=21% Similarity=0.271 Sum_probs=161.1
Q ss_pred hCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHH----HhCCCeEEEEcCchh
Q 005661 222 LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSPCIIFIDEIDA 297 (685)
Q Consensus 222 ~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A----~~~~P~ILfIDEID~ 297 (685)
.+.+.|+++||+||||||||++|+++|++++.+|+.++++++...|+|.....++.+|..+ +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999998 577899999999999
Q ss_pred hcCCCCCCch--HHHHHHHHHHHHHhhcc-----------ccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHH
Q 005661 298 IGGSRNPKDQ--QYMKMTLNQLLVELDGF-----------KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVE 364 (685)
Q Consensus 298 l~~~r~~~~~--~~~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~ 364 (685)
+++++..... .....+.+.|+..||+. ....+++||+|||+++.||++++|||||++.|+ .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 9875432211 12334557777777633 255689999999999999999999999998887 47999
Q ss_pred HHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHH-------HHHHHHHHHcCCCccCHHHHHHHHHHHhccccc
Q 005661 365 GRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLV-------NIAALKAAMDGAKAVTMADLEYAKDKIMMGSER 437 (685)
Q Consensus 365 eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv-------~~A~~~A~~~~~~~It~edl~~A~~~v~~g~~~ 437 (685)
+|.+|++.++.. .+++...++..+.||++++|..+. ..+.....++ +..+.+. .+++.+..
T Consensus 189 ~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~----~g~~~~~---~~~~~~~~- 256 (293)
T 3t15_A 189 DRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSG----TGIEKIG---DKLLNSFD- 256 (293)
T ss_dssp HHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHH----TCSTTCH---HHHTSCSS-
T ss_pred HHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH----hCHHHHH---HHHHcCCC-
Confidence 999999988764 367788999999999999887431 1111100000 0111111 12222222
Q ss_pred ccccccchhhhhhhHHHhhhHHHhh
Q 005661 438 KSAVISDESRKLTAFHEGGHALVAV 462 (685)
Q Consensus 438 ~~~~~s~~~~~~~A~hEaGhA~va~ 462 (685)
....+.+.+....++||+||+++..
T Consensus 257 ~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 257 GPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp CSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccccHHHHHHHHHHHHHH
Confidence 2234556677888999999999864
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=1.1e-26 Score=258.94 Aligned_cols=202 Identities=24% Similarity=0.328 Sum_probs=146.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC--CCEEEeeccchhh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSEFEE 265 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~--~~fi~vs~s~l~~ 265 (685)
.+...|++|+|++++++.+.++++.++. +..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999999886543 455778999999999999999999999999 9999999999999
Q ss_pred hHhhhhhHHHHHHHHHH---HhCCCeEEEEcCchhhcCCCCCCchHHH----H---------------HHHHHHHHHhh-
Q 005661 266 MFVGVGARRVRDLFSAA---KKRSPCIIFIDEIDAIGGSRNPKDQQYM----K---------------MTLNQLLVELD- 322 (685)
Q Consensus 266 ~~~g~~~~~ir~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~----~---------------~~l~~LL~~ld- 322 (685)
.+.|.... ++.+|..+ +...||||||||+|.++.++........ . +..++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 99999999 7888999999999999987754321110 0 11233555554
Q ss_pred -ccccCCCEEEEEecCCcCcCcccccCCCCccc--ccccCCC--CHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCH
Q 005661 323 -GFKQNEGIIVIAATNFPESLDKALVRPGRFDR--HIVVPNP--DVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSG 397 (685)
Q Consensus 323 -~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~--~I~i~~P--d~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sg 397 (685)
+....+.++|+++||+++.+|++++||||||+ .+.+|.| +.++|.+|++.+... |++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~-------dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH-------DLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH-------HHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH-------HHHHHHHhCCC--h
Confidence 33444456777999999999999999999999 5677777 457888888766532 68889999999 9
Q ss_pred HHHHHHHHH
Q 005661 398 ADLANLVNI 406 (685)
Q Consensus 398 adI~~lv~~ 406 (685)
+||.++|+.
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999964
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=1.2e-22 Score=213.14 Aligned_cols=222 Identities=19% Similarity=0.251 Sum_probs=167.7
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhCCCC---CCeEEEEcCCCCChHHHHHHHHHhc-------CCCEEEeeccchh
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKL---PKGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGSEFE 264 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~---pkgvLL~GPPGTGKT~LAralA~e~-------~~~fi~vs~s~l~ 264 (685)
+|+|++++++.+.+++..+..+..+.+.|... +.++||+||||||||++|+++|+.+ ..+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 79999999999999999866677777776554 4469999999999999999999988 3499999999999
Q ss_pred hhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC----
Q 005661 265 EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE---- 340 (685)
Q Consensus 265 ~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~---- 340 (685)
..+.|.....++.+|..+ .++||||||+|.+...++... .....++.|+..|+. ...++++|++||.++
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~--~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~ 184 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD--YGQEAIEILLQVMEN--NRDDLVVILAGYADRMENF 184 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C--CTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHHHH
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc--ccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHHHH
Confidence 888888888888888877 467999999999986554321 224456777777774 346789999998654
Q ss_pred -cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-HHHHHhc-------CCCCCHHHHHHHHHHHHHHH
Q 005661 341 -SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-LMIIARG-------TPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 341 -~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-l~~la~~-------t~G~sgadI~~lv~~A~~~A 411 (685)
.++|+|++ ||+.++.|++|+.+++.+|++.++.+....-+.+ +..++.. ...-+++++.++++.|...+
T Consensus 185 ~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~ 262 (309)
T 3syl_A 185 FQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQ 262 (309)
T ss_dssp HHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 25789998 9999999999999999999999998654322211 3334443 22235899999999988765
Q ss_pred HHc----CCCccCHHHHH
Q 005661 412 AMD----GAKAVTMADLE 425 (685)
Q Consensus 412 ~~~----~~~~It~edl~ 425 (685)
..+ ....++.+|+.
T Consensus 263 ~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 263 ANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHC---CEEHHHHH
T ss_pred HHHHHhccCCCCCHHHHh
Confidence 543 33556666654
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=3.7e-22 Score=214.51 Aligned_cols=252 Identities=19% Similarity=0.249 Sum_probs=166.7
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeeccchhhh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFEEM 266 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s~l~~~ 266 (685)
+..+|++++|++++++.+..+...+.. +...++++||+||||||||++|+++++.++. ||+.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 455699999999999998888776554 3344689999999999999999999999974 8988887663322
Q ss_pred H-------------------------------------------------hhhhhHHHHHHHHHHHh---------CCCe
Q 005661 267 F-------------------------------------------------VGVGARRVRDLFSAAKK---------RSPC 288 (685)
Q Consensus 267 ~-------------------------------------------------~g~~~~~ir~lF~~A~~---------~~P~ 288 (685)
+ .|.....++..|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 1 11223445556655432 1278
Q ss_pred EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEec-----------CCcCcCcccccCCCCcccccc
Q 005661 289 IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT-----------NFPESLDKALVRPGRFDRHIV 357 (685)
Q Consensus 289 ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT-----------N~p~~LD~aLlRpgRFd~~I~ 357 (685)
||||||+|.+. ...++.|+..++.. ..+++++++. |.+..++++|++ ||.. +.
T Consensus 192 vl~IDEi~~l~-----------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~ 255 (368)
T 3uk6_A 192 VLFIDEVHMLD-----------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VS 255 (368)
T ss_dssp EEEEESGGGSB-----------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EE
T ss_pred eEEEhhccccC-----------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EE
Confidence 99999999883 23455666666542 2345544443 347789999998 9975 89
Q ss_pred cCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcccc
Q 005661 358 VPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGSE 436 (685)
Q Consensus 358 i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g~~ 436 (685)
|++|+.+++.+|++.++...... .+-.+..++..+.+.+++++.++|+.|...|..++...|+.+|+.+|+..++.. .
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~-~ 334 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDE-S 334 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCH-H
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCH-H
Confidence 99999999999999998764322 222356678888756899999999999999999999999999999999864432 1
Q ss_pred cccccccchhhhhhhHHHhhhHHHhhhcC
Q 005661 437 RKSAVISDESRKLTAFHEGGHALVAVHTD 465 (685)
Q Consensus 437 ~~~~~~s~~~~~~~A~hEaGhA~va~~~~ 465 (685)
+....+.+.++ ..-++|.++--...-++
T Consensus 335 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 362 (368)
T 3uk6_A 335 RSTQYMKEYQD-AFLFNELKGETMDTSLE 362 (368)
T ss_dssp HHHHHHC----------------------
T ss_pred HHHHHHHHhhh-hhhhhcCCccccccchh
Confidence 11122333333 34477777655544443
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=1.5e-20 Score=199.95 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=165.5
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~ 268 (685)
.+.+|++++|.+++++.+...+..... ....+.++||+||||||||++|+++++.++.+|+.++|..+..
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 93 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--- 93 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc---
Confidence 345899999999999999988876432 2345668999999999999999999999999999999987642
Q ss_pred hhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEE
Q 005661 269 GVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIV 332 (685)
Q Consensus 269 g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~----------------~~~~ViV 332 (685)
...+...+.. ...+++|||||||.+. ......|+..++... ...++++
T Consensus 94 ---~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 94 ---SGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ---HHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ---hhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 2223333332 3467899999999883 223444555554322 0124899
Q ss_pred EEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 005661 333 IAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 333 IaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A 411 (685)
|++||....++++|++ ||+..+.+++|+.+++.+|++.++...... .+..+..++..+.| +.+++.++++.+...+
T Consensus 158 i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 9999999999999998 999999999999999999999998765432 22235567775554 7899999999998888
Q ss_pred HHcCCCccCHHHHHHHHHHH
Q 005661 412 AMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 412 ~~~~~~~It~edl~~A~~~v 431 (685)
...+...|+.+++..++...
T Consensus 235 ~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHTTCSEECHHHHHHHHHHH
T ss_pred HhhcCCccCHHHHHHHHHHh
Confidence 88888899999999988764
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=5.5e-20 Score=193.93 Aligned_cols=213 Identities=23% Similarity=0.246 Sum_probs=161.0
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHh
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFV 268 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~ 268 (685)
.+.+|++++|.+++++.+.+.+..... ....+.++||+||||||||++|+++++.++.+|+.++|+.+...
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~-- 77 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-- 77 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh--
Confidence 345899999999999999988875422 12346789999999999999999999999999999998876431
Q ss_pred hhhhHHHHHHHHHHHh--CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCE
Q 005661 269 GVGARRVRDLFSAAKK--RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGI 330 (685)
Q Consensus 269 g~~~~~ir~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~----------------~~~~V 330 (685)
.+++..... ..+++|||||+|.+. ... ...|+..++... ...++
T Consensus 78 -------~~l~~~l~~~~~~~~~l~lDEi~~l~--------~~~---~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 78 -------GDLAAILANSLEEGDILFIDEIHRLS--------RQA---EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -------HHHHHHHTTTCCTTCEEEETTTTSCC--------HHH---HHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -------HHHHHHHHHhccCCCEEEEECCcccc--------cch---HHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 223333322 467899999999874 112 233344443321 11368
Q ss_pred EEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 005661 331 IVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAAL 409 (685)
Q Consensus 331 iVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~~A~~ 409 (685)
++|++||.+..++++|.+ ||+.++.+++|+.+++.++++.++......- +-.+..++..+.| +++++.++++.+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 999999999999999987 9988999999999999999999987543321 2235567777765 78999999998887
Q ss_pred HHHHcCCCccCHHHHHHHHHHH
Q 005661 410 KAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 410 ~A~~~~~~~It~edl~~A~~~v 431 (685)
.+...+...|+.+++..++...
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHh
Confidence 7766677789999999887764
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=3.3e-20 Score=193.71 Aligned_cols=236 Identities=23% Similarity=0.303 Sum_probs=162.7
Q ss_pred CcCCCcHHHHHHHHHHHHH-hcCchhhhhh-CCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh-hHhhh
Q 005661 194 SDVKGVDEAKQELEEIVHY-LRDPKRFTRL-GGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MFVGV 270 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~-l~~~~~~~~~-g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~-~~~g~ 270 (685)
++|+|++++++.+...+.. +........+ ....|.++||+||||||||++|+++++.++.+++.++|+.+.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999877754 2222111111 1345779999999999999999999999999999999998876 45554
Q ss_pred h-hHHHHHHHHHH-----HhCCCeEEEEcCchhhcCCCCCCchH-HHHHHHHHHHHHhhccc--------cCCCEEEEEe
Q 005661 271 G-ARRVRDLFSAA-----KKRSPCIIFIDEIDAIGGSRNPKDQQ-YMKMTLNQLLVELDGFK--------QNEGIIVIAA 335 (685)
Q Consensus 271 ~-~~~ir~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~-~~~~~l~~LL~~ld~~~--------~~~~ViVIaa 335 (685)
. ...++.++..+ ....++||||||+|.+.......... ....+.+.|+..|++.. ...++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 3 34566666532 11236799999999998765433222 23334667777777542 3457888888
Q ss_pred ----cCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHh----h-------hhcccCccc---HHHHHhcC-----
Q 005661 336 ----TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHM----S-------KVLKADDVD---LMIIARGT----- 392 (685)
Q Consensus 336 ----TN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l----~-------~~~~~~~vd---l~~la~~t----- 392 (685)
++.+..++++|++ ||+.++.|++|+.+++.+|++.++ . .......++ +..|+..+
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4577889999997 999889999999999999998422 1 111111122 44455554
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHc-----CCC-ccCHHHHHHHHHHH
Q 005661 393 --PGFSGADLANLVNIAALKAAMD-----GAK-AVTMADLEYAKDKI 431 (685)
Q Consensus 393 --~G~sgadI~~lv~~A~~~A~~~-----~~~-~It~edl~~A~~~v 431 (685)
.+.+.+++.++++.+...+... +.. .|+.+|+.+++...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 2467899999999876544322 111 49999999887643
No 37
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.81 E-value=1e-20 Score=208.96 Aligned_cols=170 Identities=24% Similarity=0.275 Sum_probs=82.3
Q ss_pred CcCCCcHHHHHHHHHHHHH-hcCchhhhhhCCC-CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh-hHhhh
Q 005661 194 SDVKGVDEAKQELEEIVHY-LRDPKRFTRLGGK-LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE-MFVGV 270 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~-l~~~~~~~~~g~~-~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~-~~~g~ 270 (685)
++|+|++++|+.|...+.. ++.+..+..+... .|+++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999887754 4544444444433 5789999999999999999999999999999999999888 48885
Q ss_pred -hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEe-cCCcCcCcccccC
Q 005661 271 -GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA-TNFPESLDKALVR 348 (685)
Q Consensus 271 -~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa-TN~p~~LD~aLlR 348 (685)
....++.+|..+... +++||++.+.... ......+++++|+.+||++.....+ +++ ||+++.||++|+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~---~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA---EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc---hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 788999999998764 4589998875432 2334578899999999999776665 444 9999999999999
Q ss_pred CCCcccccccCCCCHH-HHHHHHHH
Q 005661 349 PGRFDRHIVVPNPDVE-GRRQIMES 372 (685)
Q Consensus 349 pgRFd~~I~i~~Pd~~-eR~~ILk~ 372 (685)
|||||++|+|++|+.. .|.+|+..
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp -------------------------
T ss_pred CCCcceEEEEcCCCCccchhhhhcC
Confidence 9999999999999988 78888643
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=2.6e-19 Score=185.26 Aligned_cols=225 Identities=20% Similarity=0.236 Sum_probs=146.1
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchh-hhHhhhh
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE-EMFVGVG 271 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~-~~~~g~~ 271 (685)
...++|.++..+.+......+. ..+...+...+.++||+||||||||++|+++|+..+.+|+.+++++.. ....+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4678899888766665322111 112223456678999999999999999999999999999999887522 1112233
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-cCCCEEEEEecCCcCcCcc-cccCC
Q 005661 272 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-QNEGIIVIAATNFPESLDK-ALVRP 349 (685)
Q Consensus 272 ~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~p~~LD~-aLlRp 349 (685)
...++.+|..+....+++|||||+|.+.+.+.... ......++.|...+++.. ...+++||++||.++.+++ .+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~- 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN- 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT-
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc-
Confidence 45678899998888899999999999976543221 112334455555556544 3456889999999999988 4554
Q ss_pred CCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCC----CHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005661 350 GRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGF----SGADLANLVNIAALKAAMDGAKAVTMADLE 425 (685)
Q Consensus 350 gRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~----sgadI~~lv~~A~~~A~~~~~~~It~edl~ 425 (685)
||+..|.+|+++. |.+|.+....... -.+.++..++..+.|+ +.+++.++++.|.. .......+++.
T Consensus 188 -rf~~~i~~p~l~~--r~~i~~i~~~~~~-~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-----~~~~~~~~~~~ 258 (272)
T 1d2n_A 188 -AFSTTIHVPNIAT--GEQLLEALELLGN-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-----MDPEYRVRKFL 258 (272)
T ss_dssp -TSSEEEECCCEEE--HHHHHHHHHHHTC-SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-----SCGGGHHHHHH
T ss_pred -ccceEEcCCCccH--HHHHHHHHHhcCC-CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-----hchHHHHHHHH
Confidence 9988888766554 3444443333222 2344567788888886 55666666665432 22334455555
Q ss_pred HHHHH
Q 005661 426 YAKDK 430 (685)
Q Consensus 426 ~A~~~ 430 (685)
.++..
T Consensus 259 ~~l~~ 263 (272)
T 1d2n_A 259 ALLRE 263 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 39
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.80 E-value=2.8e-18 Score=184.02 Aligned_cols=226 Identities=19% Similarity=0.200 Sum_probs=162.3
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeec
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSG 260 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~ 260 (685)
+..+++++|.++.++.+.+.+.... ....+.+++|+||||||||++++++++.+ +.+++.++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3456899999999888877654321 12456789999999999999999999988 889999998
Q ss_pred cchhhhH--h--------------hh-hhHHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005661 261 SEFEEMF--V--------------GV-GARRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 322 (685)
Q Consensus 261 s~l~~~~--~--------------g~-~~~~ir~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld 322 (685)
......+ . +. .......++..... ..|++|||||+|.+...+ .....+..++..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchh
Confidence 7643221 0 11 11224444544433 348899999999985321 13456777777665
Q ss_pred ccccCCCEEEEEecCCc---CcCcccccCCCCccc-ccccCCCCHHHHHHHHHHHhhhhccc---CcccHHHHHhcCC--
Q 005661 323 GFKQNEGIIVIAATNFP---ESLDKALVRPGRFDR-HIVVPNPDVEGRRQIMESHMSKVLKA---DDVDLMIIARGTP-- 393 (685)
Q Consensus 323 ~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd~-~I~i~~Pd~~eR~~ILk~~l~~~~~~---~~vdl~~la~~t~-- 393 (685)
......++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.++...... .+-.+..++..+.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 44325678999999988 678889988 8875 89999999999999999998752211 1222455666554
Q ss_pred -CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 394 -GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 394 -G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
| +++.+.++++.|...|...+...|+.+|+..|+..+.
T Consensus 239 ~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 239 HG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5 6788889999999888888888999999999988763
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=5.8e-20 Score=209.09 Aligned_cols=223 Identities=22% Similarity=0.244 Sum_probs=147.3
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCC-CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhh----
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGK-LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEE---- 265 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~-~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~---- 265 (685)
.-++|++|+++++..+.+.+.... +... .+..+||+||||||||++|+++|+.++.++..++++.+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~-------~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQK-------LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHH-------HSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHH-------hcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 345789999999999987655311 1111 3457999999999999999999999999999999887544
Q ss_pred -----hHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc-------------C
Q 005661 266 -----MFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ-------------N 327 (685)
Q Consensus 266 -----~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~-------------~ 327 (685)
.|+|.....+...|..+....| ||||||||.+...+. ....+.|+..|+.... .
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4566666667777877765555 999999999975432 1234556666654221 1
Q ss_pred CCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhh-----cc---cCccc---HHHHHh-cCCCC
Q 005661 328 EGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV-----LK---ADDVD---LMIIAR-GTPGF 395 (685)
Q Consensus 328 ~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~-----~~---~~~vd---l~~la~-~t~G~ 395 (685)
.+++||+|||.++.++++|++ ||+ +|.|+.|+.+++.+|++.++.+. .. .-.++ +..++. .+...
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 578999999999999999999 996 78999999999999999987331 11 11122 334444 33333
Q ss_pred CHHHHHHHH----HHHHHHHHHc--CCCccCHHHHHHHHHHH
Q 005661 396 SGADLANLV----NIAALKAAMD--GAKAVTMADLEYAKDKI 431 (685)
Q Consensus 396 sgadI~~lv----~~A~~~A~~~--~~~~It~edl~~A~~~v 431 (685)
+.++|++.+ +.++..+... +...|+.+|+.+++...
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 445555554 4444444333 34479999999987543
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=1.6e-18 Score=187.00 Aligned_cols=218 Identities=23% Similarity=0.293 Sum_probs=148.7
Q ss_pred cCCCcHHHHHHHHHHHHH-hcCchhhh--hhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh-Hhhh
Q 005661 195 DVKGVDEAKQELEEIVHY-LRDPKRFT--RLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM-FVGV 270 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~-l~~~~~~~--~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~-~~g~ 270 (685)
.|+|++++++.+...+.. +....... ......+.++||+||||||||++|+++|+.++.||+.++|+++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 479999999999887743 21111000 0112356789999999999999999999999999999999988754 7777
Q ss_pred h-hHHHHHHHHHH----HhCCCeEEEEcCchhhcCCCCCCc---hHHHHHHHHHHHHHhhccc-----------------
Q 005661 271 G-ARRVRDLFSAA----KKRSPCIIFIDEIDAIGGSRNPKD---QQYMKMTLNQLLVELDGFK----------------- 325 (685)
Q Consensus 271 ~-~~~ir~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~---~~~~~~~l~~LL~~ld~~~----------------- 325 (685)
. ...++.+|..+ ....++||||||+|.+...+.... ......+++.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 56677787765 344578999999999987654432 2223447788888888431
Q ss_pred --cCCCEEEEEecCCc----------Cc-----------------------------------CcccccCCCCccccccc
Q 005661 326 --QNEGIIVIAATNFP----------ES-----------------------------------LDKALVRPGRFDRHIVV 358 (685)
Q Consensus 326 --~~~~ViVIaaTN~p----------~~-----------------------------------LD~aLlRpgRFd~~I~i 358 (685)
...++++|+++|.. .. ++|+|+. ||+.++.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 22345555555532 11 5677776 99999999
Q ss_pred CCCCHHHHHHHHHH----Hhhhh-------cccCccc---HHHHHh--cCCCCCHHHHHHHHHHHHHHHHHc
Q 005661 359 PNPDVEGRRQIMES----HMSKV-------LKADDVD---LMIIAR--GTPGFSGADLANLVNIAALKAAMD 414 (685)
Q Consensus 359 ~~Pd~~eR~~ILk~----~l~~~-------~~~~~vd---l~~la~--~t~G~sgadI~~lv~~A~~~A~~~ 414 (685)
++|+.+++.+|+.. ++.+. .....++ +..|+. ....+..++|+++++.+...+..+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999999986 32221 1111122 334553 334456788999988887776554
No 42
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.76 E-value=2.4e-17 Score=161.74 Aligned_cols=201 Identities=21% Similarity=0.181 Sum_probs=143.2
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEeeccch
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEF 263 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s~l 263 (685)
.+.+|++++|.++.++.+.+.+.. . .+.++||+||||||||++++++++++ ..+++.++++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER-----------K-NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC-----------C-CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 456799999999999888877652 1 12359999999999999999999875 467888887664
Q ss_pred hhhHhhhhhHHHHHHHHHHH------hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 264 EEMFVGVGARRVRDLFSAAK------KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 264 ~~~~~g~~~~~ir~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
... ..++..+.... ...+++|||||+|.+.. ...+.|+..++. ...++.+|++||
T Consensus 80 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~--~~~~~~~i~~~~ 140 (226)
T 2chg_A 80 RGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEM--YSKSCRFILSCN 140 (226)
T ss_dssp TCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHH--TTTTEEEEEEES
T ss_pred cCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHh--cCCCCeEEEEeC
Confidence 321 12222222221 24689999999998731 123344444443 345788899999
Q ss_pred CcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Q 005661 338 FPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGA 416 (685)
Q Consensus 338 ~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~ 416 (685)
.++.+++++.+ ||. .+.+++|+.+++.++++.++.+.... .+-.+..++..+.| +.+.+.++++.++..+
T Consensus 141 ~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~----- 211 (226)
T 2chg_A 141 YVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG----- 211 (226)
T ss_dssp CGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----
T ss_pred ChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----
Confidence 99999999998 887 88999999999999999988654332 12234556766654 6666666666555432
Q ss_pred CccCHHHHHHHHH
Q 005661 417 KAVTMADLEYAKD 429 (685)
Q Consensus 417 ~~It~edl~~A~~ 429 (685)
+.|+.+|+++++.
T Consensus 212 ~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 EVVDADTIYQITA 224 (226)
T ss_dssp SCBCHHHHHHHHH
T ss_pred ceecHHHHHHHhc
Confidence 6899999999875
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.76 E-value=1.4e-17 Score=184.75 Aligned_cols=223 Identities=17% Similarity=0.257 Sum_probs=153.7
Q ss_pred CCCCCCCcCC-CcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEeecc
Q 005661 188 ESNTKFSDVK-GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGS 261 (685)
Q Consensus 188 ~~~~~f~dV~-G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s 261 (685)
.+..+|++++ |.++.. ....+......+ .. +.+++|+||||||||+||+++++++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4567899987 644432 222222222222 12 6689999999999999999999988 8899999999
Q ss_pred chhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCc
Q 005661 262 EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPES 341 (685)
Q Consensus 262 ~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~ 341 (685)
.+...+.+.........|.......++||||||+|.+..++ ..+ ..++..++.+...+..+||++.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~------~~q---~~l~~~l~~l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT------GVQ---TELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH------HHH---HHHHHHHHHHHTTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh------HHH---HHHHHHHHHHHHCCCeEEEEECCCHHH
Confidence 88665544333222223433333368899999999986421 122 233333333333445666665555654
Q ss_pred ---CcccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005661 342 ---LDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 415 (685)
Q Consensus 342 ---LD~aLlRpgRFd--~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 415 (685)
+++.|++ ||. ..+.+++|+.++|.+||+.++...... ++-.+..|+..+.| +.+++.++++.+...|...+
T Consensus 241 l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~ 317 (440)
T 2z4s_A 241 LSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG 317 (440)
T ss_dssp CSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC
Confidence 7889988 886 788999999999999999998754322 12226678888865 89999999999998887665
Q ss_pred CCccCHHHHHHHHHHHh
Q 005661 416 AKAVTMADLEYAKDKIM 432 (685)
Q Consensus 416 ~~~It~edl~~A~~~v~ 432 (685)
..|+.+++.+++....
T Consensus 318 -~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 318 -KEVDLKEAILLLKDFI 333 (440)
T ss_dssp -SCCCHHHHHHHTSTTT
T ss_pred -CCCCHHHHHHHHHHHh
Confidence 4699999999887654
No 44
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.76 E-value=9.4e-18 Score=178.54 Aligned_cols=220 Identities=24% Similarity=0.267 Sum_probs=140.3
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC-------C------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------P------ 254 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-------~------ 254 (685)
.++.+|++|+|.+++++.+.... + .+ .+.++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 35678999999999876543221 1 11 1236999999999999999999998862 2
Q ss_pred --------------------EEEeeccchhhhHhhhhhHHHHHHHHHH---------HhCCCeEEEEcCchhhcCCCCCC
Q 005661 255 --------------------FFSCSGSEFEEMFVGVGARRVRDLFSAA---------KKRSPCIIFIDEIDAIGGSRNPK 305 (685)
Q Consensus 255 --------------------fi~vs~s~l~~~~~g~~~~~ir~lF~~A---------~~~~P~ILfIDEID~l~~~r~~~ 305 (685)
++.+........+.|.. .+...|... ....+++|||||+|.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~----- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLED----- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-----
Confidence 22211111111112210 011122111 111368999999998831
Q ss_pred chHHHHHHHHHHHHHhhc----c-------ccCCCEEEEEecCCcC-cCcccccCCCCcccccccCCC-CHHHHHHHHHH
Q 005661 306 DQQYMKMTLNQLLVELDG----F-------KQNEGIIVIAATNFPE-SLDKALVRPGRFDRHIVVPNP-DVEGRRQIMES 372 (685)
Q Consensus 306 ~~~~~~~~l~~LL~~ld~----~-------~~~~~ViVIaaTN~p~-~LD~aLlRpgRFd~~I~i~~P-d~~eR~~ILk~ 372 (685)
..++.|+..++. + ....++++|++||..+ .++++|++ ||+.++.+++| +.+.+.+|++.
T Consensus 159 ------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 159 ------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 223444444432 1 1123789999999755 79999999 99988999998 67788889877
Q ss_pred Hhhh---------------------------hcccCccc---HHHHHhcC---CCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 005661 373 HMSK---------------------------VLKADDVD---LMIIARGT---PGFSGADLANLVNIAALKAAMDGAKAV 419 (685)
Q Consensus 373 ~l~~---------------------------~~~~~~vd---l~~la~~t---~G~sgadI~~lv~~A~~~A~~~~~~~I 419 (685)
++.. ....-.++ +..|+... ..-+.+.+.++++.|...|..+++..|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v 310 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAV 310 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBC
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcC
Confidence 4221 00001122 22333332 222679999999999999988898899
Q ss_pred CHHHHHHHHHHHhcc
Q 005661 420 TMADLEYAKDKIMMG 434 (685)
Q Consensus 420 t~edl~~A~~~v~~g 434 (685)
+.+|+.+|+..++..
T Consensus 311 ~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 311 GRDHLKRVATMALSH 325 (350)
T ss_dssp CHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887653
No 45
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=5.2e-18 Score=179.50 Aligned_cols=202 Identities=19% Similarity=0.244 Sum_probs=136.3
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhH
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMF 267 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~ 267 (685)
..+.+|++++|++++++.|++.+. ....|..+|++||||||||++|++++++++.+++.+++++..
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 345689999999999998888776 345677889999999999999999999999999999987753
Q ss_pred hhhhhHHHHHHHHHHHhC-----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 268 VGVGARRVRDLFSAAKKR-----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 268 ~g~~~~~ir~lF~~A~~~-----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
...++..+...... .++||||||+|.+.+ ....+.|+..++.. ..++.+|++||.+..+
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITANNIDGI 149 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEESSGGGS
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEeCCcccc
Confidence 22344444332222 578999999998841 12334455555532 3567889999999999
Q ss_pred cccccCCCCcccccccCCCCHHHHHHHHHHHhhhh-------ccc-Cc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005661 343 DKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKV-------LKA-DD-VDLMIIARGTPGFSGADLANLVNIAALKAAM 413 (685)
Q Consensus 343 D~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~-------~~~-~~-vdl~~la~~t~G~sgadI~~lv~~A~~~A~~ 413 (685)
++++++ ||. .+.|++|+.++|.+|++.++... ... .+ -.+..++..+.| |++.+++.....+
T Consensus 150 ~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g----d~R~a~~~L~~~~-- 220 (324)
T 3u61_B 150 IKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP----DFRKTIGELDSYS-- 220 (324)
T ss_dssp CTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS----CTTHHHHHHHHHG--
T ss_pred CHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC----CHHHHHHHHHHHh--
Confidence 999998 885 79999999999888776654332 111 12 224557776654 4444444333333
Q ss_pred cCCCccCHHHHHHHHH
Q 005661 414 DGAKAVTMADLEYAKD 429 (685)
Q Consensus 414 ~~~~~It~edl~~A~~ 429 (685)
....|+.+++..++.
T Consensus 221 -~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 -SKGVLDAGILSLVTN 235 (324)
T ss_dssp -GGTCBCC--------
T ss_pred -ccCCCCHHHHHHHhC
Confidence 234588888877654
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=1.1e-17 Score=186.08 Aligned_cols=204 Identities=24% Similarity=0.296 Sum_probs=147.1
Q ss_pred CCCCCcCCCcHHHH---HHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh
Q 005661 190 NTKFSDVKGVDEAK---QELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM 266 (685)
Q Consensus 190 ~~~f~dV~G~de~k---~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~ 266 (685)
+.+|++++|++.++ ..|...+.. .. +.++||+||||||||++|++|++.++.+|+.+++....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~-- 87 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA-----------GH-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG-- 87 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC--
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc-----------CC-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC--
Confidence 45799999999998 556655542 11 24899999999999999999999999999999875432
Q ss_pred HhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEec--CCcC
Q 005661 267 FVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT--NFPE 340 (685)
Q Consensus 267 ~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT--N~p~ 340 (685)
...++.+|..+. ...++||||||||.+... ..+.|+..++. ..+++|++| |...
T Consensus 88 -----~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-----------~q~~LL~~le~----~~v~lI~att~n~~~ 147 (447)
T 3pvs_A 88 -----VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-----------QQDAFLPHIED----GTITFIGATTENPSF 147 (447)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSCGGG
T ss_pred -----HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-----------HHHHHHHHHhc----CceEEEecCCCCccc
Confidence 234555665554 346899999999988432 23345555553 456777766 4445
Q ss_pred cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc--------cCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005661 341 SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK--------ADDVDLMIIARGTPGFSGADLANLVNIAALKAA 412 (685)
Q Consensus 341 ~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~--------~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~ 412 (685)
.++++|++ |+. ++.+++|+.+++..|++.++.+... -.+-.+..|+..+.| +.+++.++++.+...+.
T Consensus 148 ~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~ 223 (447)
T 3pvs_A 148 ELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAE 223 (447)
T ss_dssp SSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSC
T ss_pred ccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcc
Confidence 78999998 886 7789999999999999999876211 111225567777654 77888888888877664
Q ss_pred Hc--CCCccCHHHHHHHHHHH
Q 005661 413 MD--GAKAVTMADLEYAKDKI 431 (685)
Q Consensus 413 ~~--~~~~It~edl~~A~~~v 431 (685)
.. +...||.+++.+++.+.
T Consensus 224 ~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 224 VDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp BCTTSCEECCHHHHHHHHTCC
T ss_pred cccCCCCccCHHHHHHHHhhh
Confidence 33 44689999999987654
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=2.4e-17 Score=174.67 Aligned_cols=198 Identities=19% Similarity=0.297 Sum_probs=134.6
Q ss_pred CCCCCCCcCC-C--cHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 188 ESNTKFSDVK-G--VDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 188 ~~~~~f~dV~-G--~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
.+..+|++++ | ...+...++.++. .+ ...+.+++|+||||||||++|+++++.+ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4567899997 5 3444444444433 22 2345689999999999999999999988 8999999999
Q ss_pred chhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC-
Q 005661 262 EFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE- 340 (685)
Q Consensus 262 ~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~- 340 (685)
++...+.+.........|.... ..+++|||||+|.+..++ ..+. .++..++.....+..+|+++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~------~~~~---~l~~~l~~~~~~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE------RTQI---EFFHIFNTLYLLEKQIILASDRHPQK 144 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH------HHHH---HHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh------HHHH---HHHHHHHHHHHCCCeEEEEecCChHH
Confidence 8876655443322223333332 237899999999985421 1222 2233333223345567777777776
Q ss_pred --cCcccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005661 341 --SLDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGADLANLVNIAALK 410 (685)
Q Consensus 341 --~LD~aLlRpgRFd--~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgadI~~lv~~A~~~ 410 (685)
.++++|.+ ||+ ..+.+++ +.+++.+|++.++......- +-.+..++..+ -+.+++.++++.+...
T Consensus 145 l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 145 LDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp CTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred HHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 57899988 886 5688999 99999999999987543321 22256678887 4788888888877655
No 48
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.74 E-value=5.5e-17 Score=160.83 Aligned_cols=202 Identities=23% Similarity=0.335 Sum_probs=145.2
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 254 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------------- 254 (685)
.+..|++++|.++.++.|.+.+.. ...|..++|+||||||||++++++++.++..
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 455799999999999988877653 2345589999999999999999999887432
Q ss_pred ----------EEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 255 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 255 ----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
++.++... ......++.++..+. ...|.+|||||+|.+. ...++.|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHHH
Confidence 12222111 012233455555432 2357999999999872 2234556666
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgad 399 (685)
++. ...++.+|++||.+..+++.+.+ |+ ..+.+++|+.++..++++.++.+.... .+-.+..+++.+.| +++.
T Consensus 150 l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~ 223 (250)
T 1njg_A 150 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRD 223 (250)
T ss_dssp HHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHH
T ss_pred Hhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 653 34678999999999999999887 65 588999999999999999998754322 22235668888876 8899
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
+.++++.|... +...|+.+|+++++
T Consensus 224 ~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 224 ALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHHhc----cCceecHHHHHHHh
Confidence 99999877533 34589999998874
No 49
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=2.7e-18 Score=164.73 Aligned_cols=159 Identities=24% Similarity=0.399 Sum_probs=117.0
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
+.+|++++|.++..+.+.+.+. . ..+.++||+||||||||++|+++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 3569999999998776665432 2 335689999999999999999999986 78899999
Q ss_pred ccchh--hhHhhhhhHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 260 GSEFE--EMFVGVGARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 260 ~s~l~--~~~~g~~~~~ir~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
+..+. ..+.+.....++.++..+. ...++||||||+|.+...+...........+..++ ...++.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-------~~~~~~~i~~~ 158 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-------ARGELHCVGAT 158 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-------HTTSCCEEEEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-------ccCCeEEEEeC
Confidence 88765 2345556667788887664 45688999999999975442221122233333333 23567889999
Q ss_pred CCcC-----cCcccccCCCCcccccccCCCCHHHHHHHH
Q 005661 337 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIM 370 (685)
Q Consensus 337 N~p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~IL 370 (685)
|.++ .+++++.+ ||+ .+.+++|+.+++.+||
T Consensus 159 ~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 9876 68999998 998 6899999999999876
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.74 E-value=5.1e-18 Score=180.24 Aligned_cols=213 Identities=20% Similarity=0.153 Sum_probs=148.1
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchh--hhHhhh
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE--EMFVGV 270 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~--~~~~g~ 270 (685)
+++|+|++++++.+...+.. +.++||+||||||||++|+++++.++.+++.++++... ..+.|.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 67899999998877765432 24899999999999999999999999999999874211 112221
Q ss_pred hhHH-HHHHHHHHHhCC---CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc---------ccCCCEEEEEecC
Q 005661 271 GARR-VRDLFSAAKKRS---PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF---------KQNEGIIVIAATN 337 (685)
Q Consensus 271 ~~~~-ir~lF~~A~~~~---P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~---------~~~~~ViVIaaTN 337 (685)
.... ....|. .... .+||||||+|.+. ....+.|+..|+.. ..+.+++||+|+|
T Consensus 92 ~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 92 MIYNQHKGNFE--VKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp EEEETTTTEEE--EEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred eeecCCCCceE--eccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 1000 000000 0112 3799999999873 22334444444421 2345688888988
Q ss_pred CcC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc--------------------cCccc---HHHHH
Q 005661 338 FPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK--------------------ADDVD---LMIIA 389 (685)
Q Consensus 338 ~p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~--------------------~~~vd---l~~la 389 (685)
..+ .++++|++ ||+.++.+++|+.+++.+||+.++..... .-.++ +..++
T Consensus 159 p~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~ 236 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYII 236 (331)
T ss_dssp TTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred CCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 554 38999998 99988999999999999999998754211 00111 22222
Q ss_pred h-------------------cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005661 390 R-------------------GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 434 (685)
Q Consensus 390 ~-------------------~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g 434 (685)
. ...|.|++.+.++++.|...|..+++..|+.+|+.+++..++..
T Consensus 237 ~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 237 ELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 1 11266999999999999999999999999999999999988754
No 51
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.74 E-value=2.3e-17 Score=177.59 Aligned_cols=215 Identities=20% Similarity=0.217 Sum_probs=153.1
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----------CCCEEEeec
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----------GVPFFSCSG 260 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----------~~~fi~vs~ 260 (685)
.+++++|.++.++.+.+.+..... ...|.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 348999999999999887765322 2456789999999999999999999987 899999998
Q ss_pred cchh-hhH------h-----------hhh-hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHH-HHHHHHH
Q 005661 261 SEFE-EMF------V-----------GVG-ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMT-LNQLLVE 320 (685)
Q Consensus 261 s~l~-~~~------~-----------g~~-~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~-l~~LL~~ 320 (685)
.... ..+ . +.. ...+..++..+.... +||||||+|.+.... .... +..|+..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~-------~~~~~l~~l~~~ 161 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR-------GGDIVLYQLLRS 161 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST-------TSHHHHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC-------CCceeHHHHhcC
Confidence 7643 110 0 111 122444444444443 499999999985321 0123 4444432
Q ss_pred hhccccCCCEEEEEecCCc---CcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc---cCcccHHHHHhcCCC
Q 005661 321 LDGFKQNEGIIVIAATNFP---ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK---ADDVDLMIIARGTPG 394 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~---~~~vdl~~la~~t~G 394 (685)
. .++.+|++||.+ +.+++.+.+ ||...+.+++|+.+++.+|++.++..... -.+-.+..+++.+.+
T Consensus 162 ~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 162 D------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 2 678999999987 678899887 88889999999999999999998864211 112224556665541
Q ss_pred --CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 395 --FSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 395 --~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
-+.+.+.++|+.|...|. +...|+.+|+..++..+.
T Consensus 234 ~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 245677788888887775 567899999999988764
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=1.9e-17 Score=187.29 Aligned_cols=222 Identities=18% Similarity=0.255 Sum_probs=144.5
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcC--chhhhhhCC---CCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRD--PKRFTRLGG---KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 263 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~--~~~~~~~g~---~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l 263 (685)
.+.+|+||+|.+++++.|.+++..... +..|...|. ..++++||+||||||||++|+++|++++.+++.++++++
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 456899999999999999988875221 122333333 356899999999999999999999999999999999987
Q ss_pred hhhHhhhhh-------HHHHHHHHHH-----HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEE
Q 005661 264 EEMFVGVGA-------RRVRDLFSAA-----KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGII 331 (685)
Q Consensus 264 ~~~~~g~~~-------~~ir~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~Vi 331 (685)
......... ..++.+|..+ ....++||||||+|.+..... . .++.|+..++. ....++
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----~----~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----G----GVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----T----HHHHHHHHHHH--CSSCEE
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----H----HHHHHHHHHHh--cCCCEE
Confidence 654322111 0123344333 235689999999999965321 1 13333333332 233455
Q ss_pred EEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005661 332 VIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALK 410 (685)
Q Consensus 332 VIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~ 410 (685)
+|+++.....+++ +. |+...+.|++|+.+++.++|+..+.+.... .+-.+..|+..+.| |++.+++.....
T Consensus 184 li~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----diR~~i~~L~~~ 255 (516)
T 1sxj_A 184 LICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVINLLSTI 255 (516)
T ss_dssp EEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHHHHHTHH
T ss_pred EEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHH
Confidence 5555444344443 43 445689999999999999998887654322 22236678877754 666666654443
Q ss_pred HHHcCCCccCHHHHHHHHHH
Q 005661 411 AAMDGAKAVTMADLEYAKDK 430 (685)
Q Consensus 411 A~~~~~~~It~edl~~A~~~ 430 (685)
+. +...|+.+++..++..
T Consensus 256 ~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 256 ST--TTKTINHENINEISKA 273 (516)
T ss_dssp HH--HSSCCCTTHHHHHHHH
T ss_pred Hh--cCCCCchHHHHHHHHh
Confidence 33 3467888888776653
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=2.8e-17 Score=193.83 Aligned_cols=221 Identities=23% Similarity=0.319 Sum_probs=162.7
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
+.+|++|+|.++.++.+.+++. . ..+.++||+||||||||++|++++..+ +.+++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 3479999999998777665543 1 245689999999999999999999987 66788888
Q ss_pred ccchh--hhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCc-hHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 260 GSEFE--EMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKD-QQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 260 ~s~l~--~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~-~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
++.+. ..+.|....+++.+|..+....++||||||+|.+.+.+.... .... .+ .+..+-....+.+|++|
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~---~~----~L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA---AN----LIKPLLSSGKIRVIGST 322 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHH---HH----HHSSCSSSCCCEEEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHH---HH----HHHHHHhCCCeEEEEEe
Confidence 77765 347778888999999999888899999999999987654322 2221 22 22233345778999999
Q ss_pred CCcC-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc--c---cHHHHHhc-----CCCCCHHHHH
Q 005661 337 NFPE-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD--V---DLMIIARG-----TPGFSGADLA 401 (685)
Q Consensus 337 N~p~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~--v---dl~~la~~-----t~G~sgadI~ 401 (685)
|.++ .+|++|.| ||+ .+.|+.|+.+++.+||+.++........ + .+..++.. ...+.+..+.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 9764 47899998 998 7999999999999999988765321111 1 13334333 3446677889
Q ss_pred HHHHHHHHHHHH----cCCCccCHHHHHHHHHHHh
Q 005661 402 NLVNIAALKAAM----DGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 402 ~lv~~A~~~A~~----~~~~~It~edl~~A~~~v~ 432 (685)
.++++|+..+.. .....|+.+|+..++.++.
T Consensus 400 ~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 999998877655 2456799999999998875
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=1.1e-16 Score=171.33 Aligned_cols=226 Identities=19% Similarity=0.213 Sum_probs=158.7
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc------CCCEEEeeccc
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA------GVPFFSCSGSE 262 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~------~~~fi~vs~s~ 262 (685)
+...+++++|.++.++.|.+.+.... ....+..++|+||||||||++++++++.+ +.+++.++|..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34556899999999887776554211 12446689999999999999999999988 88999999865
Q ss_pred hhhhH----------------hhh-hhHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005661 263 FEEMF----------------VGV-GARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 324 (685)
Q Consensus 263 l~~~~----------------~g~-~~~~ir~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~ 324 (685)
....+ .+. .......++...... .|+||||||+|.+..... ...+..++..++.+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV 159 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc
Confidence 32210 011 122244455444444 389999999999864321 12455666666544
Q ss_pred ccCCCEEEEEecCCc---CcCcccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhhcccCccc---HHHHHhcCC--CC
Q 005661 325 KQNEGIIVIAATNFP---ESLDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKVLKADDVD---LMIIARGTP--GF 395 (685)
Q Consensus 325 ~~~~~ViVIaaTN~p---~~LD~aLlRpgRFd-~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd---l~~la~~t~--G~ 395 (685)
...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..+|++.++........++ +..++..+. +-
T Consensus 160 -~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 -NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp -CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred -CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 34678999999987 457778877 675 4899999999999999999886533222222 334555554 13
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 396 SGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 396 sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
+++.+.++|+.+...+..++...|+.+|+..|+..+.
T Consensus 237 ~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 237 DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 6777888999999888888888999999999988764
No 55
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.72 E-value=9e-17 Score=160.69 Aligned_cols=206 Identities=13% Similarity=0.128 Sum_probs=138.9
Q ss_pred CCCCCCcCCCc---HHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc
Q 005661 189 SNTKFSDVKGV---DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 262 (685)
Q Consensus 189 ~~~~f~dV~G~---de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~ 262 (685)
+..+|++++|. ..+.+.+..++. . ..+.+++|+||||||||++|+++++++ +.+++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45689999973 345444444433 1 135689999999999999999999877 47889999888
Q ss_pred hhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCE-EEEEecCCcC-
Q 005661 263 FEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGI-IVIAATNFPE- 340 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~V-iVIaaTN~p~- 340 (685)
+...+... +.. ...+++|||||+|.+... ......+..++ +.......+ +|+.+++.++
T Consensus 91 ~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~------~~~~~~l~~~l---~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 91 HASISTAL--------LEG--LEQFDLICIDDVDAVAGH------PLWEEAIFDLY---NRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp GGGSCGGG--------GTT--GGGSSEEEEETGGGGTTC------HHHHHHHHHHH---HHHHHHCSCEEEEEESSCTTT
T ss_pred HHHHHHHH--------HHh--ccCCCEEEEeccccccCC------HHHHHHHHHHH---HHHHHcCCCeEEEEcCCCHHH
Confidence 76543211 111 134789999999988432 11122233333 322233344 4444444443
Q ss_pred --cCcccccCCCCcc--cccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005661 341 --SLDKALVRPGRFD--RHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 415 (685)
Q Consensus 341 --~LD~aLlRpgRFd--~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 415 (685)
.+++.+.+ ||. ..+.+++|+.+++.++++.++...... .+-.+..++..+.| +.+++.++++.+...|..++
T Consensus 152 ~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~ 228 (242)
T 3bos_A 152 AGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ 228 (242)
T ss_dssp TTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC
Confidence 45577777 775 789999999999999999998754332 12225567777765 88999999999988876555
Q ss_pred CCccCHHHHHHHHH
Q 005661 416 AKAVTMADLEYAKD 429 (685)
Q Consensus 416 ~~~It~edl~~A~~ 429 (685)
..|+.+|+++++.
T Consensus 229 -~~It~~~v~~~l~ 241 (242)
T 3bos_A 229 -RKLTIPFVKEMLR 241 (242)
T ss_dssp -CCCCHHHHHHHHT
T ss_pred -CCCcHHHHHHHhh
Confidence 5699999988763
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.72 E-value=4.9e-16 Score=166.06 Aligned_cols=213 Identities=20% Similarity=0.250 Sum_probs=156.5
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhh
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGV 270 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~ 270 (685)
.+|++++|.+.+++.+...+..-+. ....+..++|+||||||||||++++|+.+++++...++..+...
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~---- 90 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ---- 90 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH----
Confidence 4799999999998888776653211 12456689999999999999999999999999888877654321
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc----------------cCCCEEEEE
Q 005661 271 GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK----------------QNEGIIVIA 334 (685)
Q Consensus 271 ~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~----------------~~~~ViVIa 334 (685)
..+..++.. ...++|+||||++.+.. .....+. ..++.+. ....+.+++
T Consensus 91 --~~l~~~~~~--~~~~~v~~iDE~~~l~~--------~~~e~L~---~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 --GDMAAILTS--LERGDVLFIDEIHRLNK--------AVEELLY---SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp --HHHHHHHHH--CCTTCEEEEETGGGCCH--------HHHHHHH---HHHHTSCCCC---------------CCCEEEE
T ss_pred --HHHHHHHHH--ccCCCEEEEcchhhcCH--------HHHHHHH---HHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 122333322 23467999999998842 1222222 2222221 012467888
Q ss_pred ecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005661 335 ATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADD-VDLMIIARGTPGFSGADLANLVNIAALKAAM 413 (685)
Q Consensus 335 aTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~-vdl~~la~~t~G~sgadI~~lv~~A~~~A~~ 413 (685)
+|+++..|++.+++ ||...+.+++|+.+++.+|++.........-+ -.+..|+..+.| +++.+.++++.+...|..
T Consensus 156 at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 156 ATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 99999999999998 99888899999999999999998765433222 225568888876 778999999999888888
Q ss_pred cCCCccCHHHHHHHHHHHh
Q 005661 414 DGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 414 ~~~~~It~edl~~A~~~v~ 432 (685)
.+...|+.+++.+|++.+.
T Consensus 233 ~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 233 VKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HTCSSBCHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHhC
Confidence 8888999999999998863
No 57
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=6.5e-17 Score=175.11 Aligned_cols=233 Identities=21% Similarity=0.232 Sum_probs=142.7
Q ss_pred CcCCCcHHHHHHHHHHHHH-hcCchhh-----------------hhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCE
Q 005661 194 SDVKGVDEAKQELEEIVHY-LRDPKRF-----------------TRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPF 255 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~-l~~~~~~-----------------~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~f 255 (685)
++|+|++++|+.|...+.. ++..... ..-....+.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999887732 1111100 001234566899999999999999999999999999
Q ss_pred EEeeccchhh-hHhhhh-hHHHHHHHHHHH----hCCCeEEEEcCchhhcCCCCCCc---hHHHHHHHHHHHHHhhccc-
Q 005661 256 FSCSGSEFEE-MFVGVG-ARRVRDLFSAAK----KRSPCIIFIDEIDAIGGSRNPKD---QQYMKMTLNQLLVELDGFK- 325 (685)
Q Consensus 256 i~vs~s~l~~-~~~g~~-~~~ir~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~---~~~~~~~l~~LL~~ld~~~- 325 (685)
+.++|+.+.. .|.|.. ...+..+|..+. ...++||||||+|.+...+.... .......++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 9999998763 455543 344556655432 23578999999999976532211 0111125667777777531
Q ss_pred ------------------cCCCEEEEEecCCc-----------------------------------------CcCcccc
Q 005661 326 ------------------QNEGIIVIAATNFP-----------------------------------------ESLDKAL 346 (685)
Q Consensus 326 ------------------~~~~ViVIaaTN~p-----------------------------------------~~LD~aL 346 (685)
...++++|+++|.. ..+.+.|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12567888888721 0134555
Q ss_pred cCCCCcccccccCCCCHHHHHHHHHH----Hhhhh-------cccCccc---HHHHHhcCC--CCCHHHHHHHHHHHHHH
Q 005661 347 VRPGRFDRHIVVPNPDVEGRRQIMES----HMSKV-------LKADDVD---LMIIARGTP--GFSGADLANLVNIAALK 410 (685)
Q Consensus 347 lRpgRFd~~I~i~~Pd~~eR~~ILk~----~l~~~-------~~~~~vd---l~~la~~t~--G~sgadI~~lv~~A~~~ 410 (685)
.+ ||+.++.|++++.++..+|+.. ++.+. .....++ +..|+.... ....++|+++++.+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 55 8888899999999999999973 22211 0011122 344555432 35678999999988877
Q ss_pred HHHcCC------CccCHHHHHHHH
Q 005661 411 AAMDGA------KAVTMADLEYAK 428 (685)
Q Consensus 411 A~~~~~------~~It~edl~~A~ 428 (685)
+..+.. ..|+.+++..+.
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHhhccCCCCCEEEEeHHHhcCCC
Confidence 655321 258888886643
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=5.7e-17 Score=169.83 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=136.9
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh----
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM---- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~---- 266 (685)
++++|++++++.+...+......- .-..+++..+||+||||||||++|+++++.+ +.+|+.++|+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468899999999988876532100 0011223369999999999999999999988 668999999876442
Q ss_pred -Hhhh-----hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCEE
Q 005661 267 -FVGV-----GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGII 331 (685)
Q Consensus 267 -~~g~-----~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~---------~~~~Vi 331 (685)
+.|. +......+........++||||||+|.+. ....+.|+..|+... ...+++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 1211 00000123333444556899999999883 234455555554322 113688
Q ss_pred EEEecCC--------------------------cCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc------
Q 005661 332 VIAATNF--------------------------PESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK------ 379 (685)
Q Consensus 332 VIaaTN~--------------------------p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~------ 379 (685)
+|+|||. ...++++|++ ||+..+.+++|+.+++..|+++++.+...
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998 4567888887 99999999999999999999998876421
Q ss_pred -cCccc---HHHHHhcCC--CCCHHHHHHHHHHHHHHH
Q 005661 380 -ADDVD---LMIIARGTP--GFSGADLANLVNIAALKA 411 (685)
Q Consensus 380 -~~~vd---l~~la~~t~--G~sgadI~~lv~~A~~~A 411 (685)
...++ +..|+.... ..+.++|+++++.+...+
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 11222 445565544 467788999988776654
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.2e-18 Score=178.77 Aligned_cols=160 Identities=11% Similarity=0.110 Sum_probs=117.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEeeccchhh
Q 005661 196 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCSGSEFEE 265 (685)
Q Consensus 196 V~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs~s~l~~ 265 (685)
|.|.++..+.+...+.. .+....|.+++|+||||||||++++++++++ ++.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~--------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD--------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 56667666666655543 2234567899999999999999999999988 45788999877543
Q ss_pred h----------Hh------hhhhHHHHHHHHHH--HhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC
Q 005661 266 M----------FV------GVGARRVRDLFSAA--KKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN 327 (685)
Q Consensus 266 ~----------~~------g~~~~~ir~lF~~A--~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~ 327 (685)
. +. +.....++.+|... ....++||||||+|.+. .+..+..|+.... ...
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~----------~q~~L~~l~~~~~--~~~ 161 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL----------SEKILQYFEKWIS--SKN 161 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC----------CTHHHHHHHHHHH--CSS
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh----------cchHHHHHHhccc--ccC
Confidence 2 11 12345677788764 35668999999999996 1345666665433 245
Q ss_pred CCEEEEEecCCcCc----CcccccCCCCcc-cccccCCCCHHHHHHHHHHHhhhh
Q 005661 328 EGIIVIAATNFPES----LDKALVRPGRFD-RHIVVPNPDVEGRRQIMESHMSKV 377 (685)
Q Consensus 328 ~~ViVIaaTN~p~~----LD~aLlRpgRFd-~~I~i~~Pd~~eR~~ILk~~l~~~ 377 (685)
.+++||+++|..+. |++++.+ ||. ++|.|++++.++..+|++..+...
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 68999999998865 4455555 786 579999999999999999999764
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.70 E-value=1e-16 Score=179.14 Aligned_cols=204 Identities=23% Similarity=0.318 Sum_probs=138.3
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
+.+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|+.++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 45799999999998887766542 224489999999999999999999986 78899999
Q ss_pred ccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 260 GSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 260 ~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
++ ..|.|.....++.+|..+....|+||||| +. ....+.|+..| ..+.+.+|++||.+
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~----------~~a~~~L~~~L----~~g~v~vI~at~~~ 301 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------IDASNILKPSL----ARGELQCIGATTLD 301 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT----TSSSCEEEEECCTT
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc----------hhHHHHHHHhh----cCCCEEEEecCCHH
Confidence 88 56778888889999999998889999999 10 11223333333 34679999999998
Q ss_pred C-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-----HHHHHhc-----CCCCCHHHHHHHH
Q 005661 340 E-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-----LMIIARG-----TPGFSGADLANLV 404 (685)
Q Consensus 340 ~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-----l~~la~~-----t~G~sgadI~~lv 404 (685)
+ .+|++|.| ||. .|.|+.|+.+++.+||+.++.+......+. +..++.. ...+.+....+++
T Consensus 302 e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 302 EYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp TTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHH
Confidence 7 68999999 998 599999999999999999887643222222 2333333 2334566777888
Q ss_pred HHHHHHHHHcCCC-ccCHHHHHHHHHH
Q 005661 405 NIAALKAAMDGAK-AVTMADLEYAKDK 430 (685)
Q Consensus 405 ~~A~~~A~~~~~~-~It~edl~~A~~~ 430 (685)
.+|+..+...... .-..++++..+.+
T Consensus 379 ~~a~~~~~~~~~~~p~~i~~l~~~i~~ 405 (468)
T 3pxg_A 379 DEAGSKVRLRSFTTPPNLKELEQKLDE 405 (468)
T ss_dssp HHHHHHHHHHTTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 8877666554322 2334444444443
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.70 E-value=6e-16 Score=166.35 Aligned_cols=222 Identities=14% Similarity=0.132 Sum_probs=158.3
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCC--eEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccch
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK--GVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEF 263 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pk--gvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l 263 (685)
+..+++++|.++.++.+.+.+..... ...+. .++|+||||||||++++++++.+ +.+++.++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 44568999999999998887764211 12334 89999999999999999999988 678999998654
Q ss_pred hhh--Hh--------------hhhh-HHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc
Q 005661 264 EEM--FV--------------GVGA-RRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK 325 (685)
Q Consensus 264 ~~~--~~--------------g~~~-~~ir~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~ 325 (685)
... .. +... .....+..... ...|.||||||+|.+. ...+..|+..++.+.
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEAD 153 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCC
Confidence 321 00 1011 11222222222 3458999999999881 234556666665443
Q ss_pred c--CCCEEEEEecCCc---CcCcccccCCCCccc-ccccCCCCHHHHHHHHHHHhhhhcccCcc---cHHHHHhcCC---
Q 005661 326 Q--NEGIIVIAATNFP---ESLDKALVRPGRFDR-HIVVPNPDVEGRRQIMESHMSKVLKADDV---DLMIIARGTP--- 393 (685)
Q Consensus 326 ~--~~~ViVIaaTN~p---~~LD~aLlRpgRFd~-~I~i~~Pd~~eR~~ILk~~l~~~~~~~~v---dl~~la~~t~--- 393 (685)
. ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+........+ .+..++..+.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 2 2578999999988 567777776 7765 78999999999999999988753211222 2455677663
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 394 -----GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 394 -----G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
+-+.+.+.++++.|...|..++...|+.+|+..++..+.
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 236788899999999999888888999999999988764
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=1.9e-16 Score=189.30 Aligned_cols=203 Identities=24% Similarity=0.323 Sum_probs=136.7
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
+.+|++++|.++.++.+.+++. . ..+.++||+||||||||++|+++|+.+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4579999999987776665543 1 234579999999999999999999987 88999999
Q ss_pred ccchh--hhHhhhhhHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 260 GSEFE--EMFVGVGARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 260 ~s~l~--~~~~g~~~~~ir~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
++.+. ..+.|.....++.+|..+... .|+||||||+|.+.+.+...+.......+..++ + ...+.+|++|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l---~----~~~i~~I~at 306 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL---A----RGELRLIGAT 306 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH---H----TTCCCEEEEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH---h----CCCeEEEEec
Confidence 99886 457788888999999998775 689999999999976543332222223333333 2 3568899999
Q ss_pred CCcC----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-----HHHHHh-----cCCCCCHHHHHH
Q 005661 337 NFPE----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-----LMIIAR-----GTPGFSGADLAN 402 (685)
Q Consensus 337 N~p~----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-----l~~la~-----~t~G~sgadI~~ 402 (685)
|.++ .+|++|.| ||+. |.|+.|+.+++.+||+.++.......++. +..++. .+..+.+.....
T Consensus 307 ~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 307 TLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp CHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred CchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 9775 47999999 9984 99999999999999998876543222221 233333 245677888899
Q ss_pred HHHHHHHHHHHc
Q 005661 403 LVNIAALKAAMD 414 (685)
Q Consensus 403 lv~~A~~~A~~~ 414 (685)
++.+|+..+...
T Consensus 384 lldea~a~~~~~ 395 (854)
T 1qvr_A 384 LIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999888777654
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=2.7e-16 Score=167.21 Aligned_cols=206 Identities=19% Similarity=0.189 Sum_probs=143.0
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC------CCEEEeeccc
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG------VPFFSCSGSE 262 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~------~~fi~vs~s~ 262 (685)
.+.+|++++|.+++++.|...+. . ...| ++||+||||||||++|+++++.++ ..++.+++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLK---S--------ANLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTT---C--------TTCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHh---c--------CCCC-EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 45689999999999887776543 1 1223 499999999999999999999864 4688888876
Q ss_pred hhhhHhhhhhHHHHHHHHHHH----------------hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc
Q 005661 263 FEEMFVGVGARRVRDLFSAAK----------------KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ 326 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A~----------------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~ 326 (685)
.... ..+++.+.... ...+.||||||+|.+.. ...+.|+..|+..
T Consensus 100 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~~le~~-- 160 (353)
T 1sxj_D 100 ERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETY-- 160 (353)
T ss_dssp CCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHT--
T ss_pred ccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHHHHHhc--
Confidence 4211 11222111111 12457999999998841 2234555555532
Q ss_pred CCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHH
Q 005661 327 NEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVN 405 (685)
Q Consensus 327 ~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~ 405 (685)
...+.+|.+||.++.+++++++ |+. .+.+++|+.++...+++..+.+.... .+-.+..++..+.| +.+.+.++++
T Consensus 161 ~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~ 236 (353)
T 1sxj_D 161 SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQ 236 (353)
T ss_dssp TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHH
T ss_pred CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3456777788999999999998 886 78999999999999999988654321 22235667887775 5677777777
Q ss_pred HHHHHHHHcCCC-ccCHHHHHHHHH
Q 005661 406 IAALKAAMDGAK-AVTMADLEYAKD 429 (685)
Q Consensus 406 ~A~~~A~~~~~~-~It~edl~~A~~ 429 (685)
.+...+.+.+.. .|+.+|+..++.
T Consensus 237 ~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 237 SASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHhcCCCccCccccHHHHHHHhC
Confidence 776666554433 799999987654
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.67 E-value=3.4e-16 Score=184.68 Aligned_cols=195 Identities=22% Similarity=0.279 Sum_probs=135.7
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCC-eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhh
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPK-GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVG 269 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pk-gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g 269 (685)
++|+|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|+.+ +.+|+.++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5799999999999888875332110 112233 69999999999999999999987 789999999998876544
Q ss_pred hhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCEEEEEecCCcC
Q 005661 270 VGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGIIVIAATNFPE 340 (685)
Q Consensus 270 ~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~---------~~~~ViVIaaTN~p~ 340 (685)
. ...++...+...++||||||||.+. ...++.|+..|+... ...+++||+|||.+.
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAH-----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSC-----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 3 2233344556677899999999872 234555666565421 234689999999754
Q ss_pred c------------CcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-------cCccc---HHHHHh--cCCCCC
Q 005661 341 S------------LDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK-------ADDVD---LMIIAR--GTPGFS 396 (685)
Q Consensus 341 ~------------LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~-------~~~vd---l~~la~--~t~G~s 396 (685)
. ++|.|++ ||+.+|.|++|+.+++.+|++.++..... ...++ +..|+. ....++
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 709 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYG 709 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTT
T ss_pred hhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCC
Confidence 3 6777876 99999999999999999999998865311 11222 334544 344556
Q ss_pred HHHHHHHHHHHHH
Q 005661 397 GADLANLVNIAAL 409 (685)
Q Consensus 397 gadI~~lv~~A~~ 409 (685)
.++|+++++.+..
T Consensus 710 ~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 710 ARPLRRAIQKHVE 722 (758)
T ss_dssp TTTHHHHHHHHTH
T ss_pred ChHHHHHHHHHHH
Confidence 7788888876543
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.67 E-value=6.2e-16 Score=182.47 Aligned_cols=189 Identities=23% Similarity=0.319 Sum_probs=135.9
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
+.+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred hCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 35689999999998888776542 234589999999999999999999997 88899888
Q ss_pred ccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 260 GSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 260 ~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
+ ...|.|....+++.+|..+....|+||||| + .....+.|+..|+ ...+.+|++||..
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l~----~~~v~~I~at~~~ 301 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSLA----RGELQCIGATTLD 301 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCTT----SSSCEEEEECCTT
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHHh----cCCEEEEeCCChH
Confidence 8 555788888899999999999999999999 1 0112233333333 5679999999998
Q ss_pred C-----cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCccc-----HHHHHh-----cCCCCCHHHHHHHH
Q 005661 340 E-----SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVD-----LMIIAR-----GTPGFSGADLANLV 404 (685)
Q Consensus 340 ~-----~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vd-----l~~la~-----~t~G~sgadI~~lv 404 (685)
+ .+|+++.| ||. .|.|+.|+.+++.+||+.++.+......++ +..++. .+.++.+.....++
T Consensus 302 ~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll 378 (758)
T 3pxi_A 302 EYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (758)
T ss_dssp TTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHH
Confidence 8 69999999 995 699999999999999998887653333322 222332 24567788888899
Q ss_pred HHHHHHHHHcC
Q 005661 405 NIAALKAAMDG 415 (685)
Q Consensus 405 ~~A~~~A~~~~ 415 (685)
.+|+..+....
T Consensus 379 ~~a~~~~~~~~ 389 (758)
T 3pxi_A 379 DEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhc
Confidence 98887766543
No 66
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.66 E-value=1.5e-16 Score=152.55 Aligned_cols=151 Identities=26% Similarity=0.401 Sum_probs=110.1
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----------CCCEEEee
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----------GVPFFSCS 259 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----------~~~fi~vs 259 (685)
+.+|++++|.++..+.+.+.+. . ..+.++||+||||||||++|+++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 3469999999987666655442 2 235689999999999999999999987 78889888
Q ss_pred ccchhhh--HhhhhhHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCC-CCchHHHHHHHHHHHHHhhccccCCCEEEEEe
Q 005661 260 GSEFEEM--FVGVGARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRN-PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA 335 (685)
Q Consensus 260 ~s~l~~~--~~g~~~~~ir~lF~~A~~~-~P~ILfIDEID~l~~~r~-~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 335 (685)
+..+... +.+.....++.++..+... .|++|||||+|.+...+. ..........+..++ + ..++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~---~----~~~~~ii~~ 158 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPML---A----RGELRCIGA 158 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHH---H----TTCSCEEEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHH---h----cCCeeEEEe
Confidence 8776532 4455566778888777655 688999999999975543 211122222333332 2 356889999
Q ss_pred cCCcC-----cCcccccCCCCcccccccCCCC
Q 005661 336 TNFPE-----SLDKALVRPGRFDRHIVVPNPD 362 (685)
Q Consensus 336 TN~p~-----~LD~aLlRpgRFd~~I~i~~Pd 362 (685)
||.++ .+|+++++ ||+ .+.+++|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99876 58999999 998 48999886
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.66 E-value=5.8e-16 Score=161.94 Aligned_cols=205 Identities=21% Similarity=0.225 Sum_probs=139.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEeeccc
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSE 262 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s~ 262 (685)
..+.+|++++|++++++.|.+.+. . ...| ++||+||||||||++|+++++.+ +.+++.+++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 345689999999999888776543 1 2333 39999999999999999999986 45688888876
Q ss_pred hhhhHhhhhhHHHHHHHHHH-H-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 263 FEEMFVGVGARRVRDLFSAA-K-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A-~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
.... ......+....... . ...+.||||||+|.+. ....+.|+..++. ...++++|++||.++
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEM--YSKSCRFILSCNYVS 143 (319)
T ss_dssp TTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSS--SSSSEEEEEEESCGG
T ss_pred ccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEeCChh
Confidence 4321 11111222221110 0 2457899999999883 1234555555553 346788999999999
Q ss_pred cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Q 005661 341 SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAV 419 (685)
Q Consensus 341 ~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~I 419 (685)
.+++++.+ |+. .+.+++|+.+++.++++.++.+.... .+-.+..++..+.| +.+.+.++++.+.. . ...|
T Consensus 144 ~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~---~--~~~i 214 (319)
T 2chq_A 144 RIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA---I--GEVV 214 (319)
T ss_dssp GSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH---S--SSCB
T ss_pred hcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH---c--CCCC
Confidence 99999998 886 89999999999999999988764332 12224556766644 44555555544332 1 3578
Q ss_pred CHHHHHHHH
Q 005661 420 TMADLEYAK 428 (685)
Q Consensus 420 t~edl~~A~ 428 (685)
+.+++..++
T Consensus 215 ~~~~v~~~~ 223 (319)
T 2chq_A 215 DADTIYQIT 223 (319)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHH
Confidence 988887663
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=8.1e-16 Score=181.37 Aligned_cols=194 Identities=21% Similarity=0.283 Sum_probs=135.8
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCC---CCC-eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhh---
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGK---LPK-GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEM--- 266 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~---~pk-gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~--- 266 (685)
++|+|++++++.+...+...+ .|.. .|. ++||+||||||||++|+++|+.++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 458899999988887766422 2332 233 69999999999999999999999999999999988653
Q ss_pred ---------HhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcccc---------CC
Q 005661 267 ---------FVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQ---------NE 328 (685)
Q Consensus 267 ---------~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~---------~~ 328 (685)
|+|.... ..+....+...++||||||||.+. ..+++.|+..|+...- ..
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-----------HHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 4443221 223444556667999999999872 2355666666663211 14
Q ss_pred CEEEEEecCCcC-------------------------cCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc----
Q 005661 329 GIIVIAATNFPE-------------------------SLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK---- 379 (685)
Q Consensus 329 ~ViVIaaTN~p~-------------------------~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~---- 379 (685)
+++||+|||.+. .++|+|++ |||.+|.|++|+.+++..|++.++.+...
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~ 675 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQ 675 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999754 56788887 99999999999999999999999874311
Q ss_pred ---cCccc---HHHHHhc--CCCCCHHHHHHHHHHHHH
Q 005661 380 ---ADDVD---LMIIARG--TPGFSGADLANLVNIAAL 409 (685)
Q Consensus 380 ---~~~vd---l~~la~~--t~G~sgadI~~lv~~A~~ 409 (685)
...++ +..|+.. ...++.++|.++++.+..
T Consensus 676 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 676 KGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp TTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred CCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 11122 2334432 233456777777776554
No 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.65 E-value=3.4e-15 Score=159.96 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=145.7
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC--------------
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-------------- 254 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-------------- 254 (685)
.+.+|++++|.+++++.|.+.+.. ...|..+||+||||||||++|+++++.++..
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 345799999999999988887652 2445689999999999999999999988542
Q ss_pred ----------EEEeeccchhhhHhhhhhHHHHHHHHHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHH
Q 005661 255 ----------FFSCSGSEFEEMFVGVGARRVRDLFSAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVE 320 (685)
Q Consensus 255 ----------fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ 320 (685)
++.++... ..+...++.++..+.. ..+.||+|||+|.+. ....+.|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~~ 142 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (373)
T ss_dssp HHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHHHH
Confidence 22222211 0112345666666542 346899999999883 2345666666
Q ss_pred hhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccC-cccHHHHHhcCCCCCHHH
Q 005661 321 LDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKAD-DVDLMIIARGTPGFSGAD 399 (685)
Q Consensus 321 ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~-~vdl~~la~~t~G~sgad 399 (685)
++. ...++++|++||.+..+++.+.+ |+ ..+.+++|+.++..++++.++.+....- +-.+..++..+.| +.++
T Consensus 143 le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~ 216 (373)
T 1jr3_A 143 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRD 216 (373)
T ss_dssp HHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHH
T ss_pred Hhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHH
Confidence 664 34678899999999999999987 76 5889999999999999999987653322 2225567888865 7888
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 005661 400 LANLVNIAALKAAMDGAKAVTMADLEYAK 428 (685)
Q Consensus 400 I~~lv~~A~~~A~~~~~~~It~edl~~A~ 428 (685)
+.++++.+...+ ...|+.+++..++
T Consensus 217 ~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 217 ALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 888888765432 3579999987764
No 70
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=3e-15 Score=156.80 Aligned_cols=201 Identities=17% Similarity=0.151 Sum_probs=142.4
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-----CCCEEEeeccch
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEF 263 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s~l 263 (685)
.+.+|++++|++++++.|.+.+.. ...|. +||+||||+|||++|+++++.+ +.+++.+++++.
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 456799999999999988877641 23454 9999999999999999999986 456888887653
Q ss_pred hhhHhhhhhHHHHHHHHHHH-------hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 264 EEMFVGVGARRVRDLFSAAK-------KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 264 ~~~~~g~~~~~ir~lF~~A~-------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
.. ...++.++.... ...+.||+|||+|.+.. ...+.|+..++. ...++.+|++|
T Consensus 84 ~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~--~~~~~~~il~~ 144 (323)
T 1sxj_B 84 RG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMEL--YSNSTRFAFAC 144 (323)
T ss_dssp CS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHH--TTTTEEEEEEE
T ss_pred cC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhc--cCCCceEEEEe
Confidence 21 233455555443 23478999999998831 223445555553 34568888899
Q ss_pred CCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005661 337 NFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 415 (685)
Q Consensus 337 N~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 415 (685)
|.++.+++.+.+ |+. .+.+++|+.+++.++++.++.+.... .+-.+..++..+.| +.+.+.++++.+...
T Consensus 145 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~----- 215 (323)
T 1sxj_B 145 NQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG----- 215 (323)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-----
T ss_pred CChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-----
Confidence 999999999988 775 89999999999999999988654322 12234567777654 555556666554421
Q ss_pred CCccCHHHHHHHHH
Q 005661 416 AKAVTMADLEYAKD 429 (685)
Q Consensus 416 ~~~It~edl~~A~~ 429 (685)
...|+.+++..++.
T Consensus 216 ~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 HGLVNADNVFKIVD 229 (323)
T ss_dssp HSSBCHHHHHHHHT
T ss_pred CCCcCHHHHHHHHC
Confidence 14689999877653
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.63 E-value=7.3e-16 Score=158.50 Aligned_cols=204 Identities=20% Similarity=0.213 Sum_probs=121.2
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC---CCEEEeeccchhhhH
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEFEEMF 267 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~---~~fi~vs~s~l~~~~ 267 (685)
.+|++++|.++.++.+.+.+..+.. .+.++||+||||||||++|++++.... .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 5799999999999988877765322 245899999999999999999999874 799999999875432
Q ss_pred h-----hhhhHH-------HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc---------cc
Q 005661 268 V-----GVGARR-------VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF---------KQ 326 (685)
Q Consensus 268 ~-----g~~~~~-------ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~---------~~ 326 (685)
. |..... ....|.. ..+++|||||+|.+.. .. ...|+..++.. ..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~--------~~---q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM--------MV---QEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH--------HH---HHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH--------HH---HHHHHHHHHhCCeecCCCcccc
Confidence 1 110000 0112222 2357999999998841 22 33444444421 12
Q ss_pred CCCEEEEEecCCc-------CcCcccccCCCCcccccccCCCCHHHH----HHHHHHHhhhhc----cc--CcccHH---
Q 005661 327 NEGIIVIAATNFP-------ESLDKALVRPGRFDRHIVVPNPDVEGR----RQIMESHMSKVL----KA--DDVDLM--- 386 (685)
Q Consensus 327 ~~~ViVIaaTN~p-------~~LD~aLlRpgRFd~~I~i~~Pd~~eR----~~ILk~~l~~~~----~~--~~vdl~--- 386 (685)
..++.+|++||.+ ..+++.|.+ ||+. +.+..|+.++| ..++++++.... .. ..++-+
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 3468899999974 135677776 7752 44555555544 445566654421 11 134433
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 005661 387 IIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADL 424 (685)
Q Consensus 387 ~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl 424 (685)
.+.......+.++|+++++.+...+ ....|+.+|+
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 3444443335678888888877654 3456666665
No 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=7.9e-15 Score=153.84 Aligned_cols=201 Identities=21% Similarity=0.240 Sum_probs=138.5
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC-----CCEEEeeccc
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG-----VPFFSCSGSE 262 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~-----~~fi~vs~s~ 262 (685)
..+.+|++++|++++++.|...+.. ...| ++||+||||||||++|+++++.+. .+++.+++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-----------GSMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-----------TCCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 3456799999999999998877652 1223 599999999999999999999863 3578888776
Q ss_pred hhhhHhhhhhHHHHHHHHHH-H-----hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 263 FEEMFVGVGARRVRDLFSAA-K-----KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 263 l~~~~~g~~~~~ir~lF~~A-~-----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
.... ..++..+... . ...+.+|+|||+|.+. ....+.|+..++. ...++.+|++|
T Consensus 87 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~--~~~~~~~i~~~ 147 (327)
T 1iqp_A 87 ERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEM--FSSNVRFILSC 147 (327)
T ss_dssp HHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHH--TTTTEEEEEEE
T ss_pred cCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHh--cCCCCeEEEEe
Confidence 4321 1122222111 1 1457899999999883 1234555555553 34568888899
Q ss_pred CCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Q 005661 337 NFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAMDG 415 (685)
Q Consensus 337 N~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~ 415 (685)
|.++.+++++.+ |+. .+.+++|+.++..++++.++...... ++-.+..++..+.| +.+.+.++++.+.. .
T Consensus 148 ~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~-----~ 218 (327)
T 1iqp_A 148 NYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA-----L 218 (327)
T ss_dssp SCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT-----T
T ss_pred CCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh-----c
Confidence 999999999987 776 78999999999999999888654321 12224556776654 55666666654432 2
Q ss_pred CCccCHHHHHHHH
Q 005661 416 AKAVTMADLEYAK 428 (685)
Q Consensus 416 ~~~It~edl~~A~ 428 (685)
...|+.+++...+
T Consensus 219 ~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 219 DKKITDENVFMVA 231 (327)
T ss_dssp CSEECHHHHHHHT
T ss_pred CCCCCHHHHHHHH
Confidence 3468888887654
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.61 E-value=4.5e-16 Score=174.97 Aligned_cols=211 Identities=19% Similarity=0.174 Sum_probs=133.8
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC--CCEEEeeccc-hhhhHhhh
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSE-FEEMFVGV 270 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~--~~fi~vs~s~-l~~~~~g~ 270 (685)
..|+|.+++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+++.- ..+.+.|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3688999998776644331 23899999999999999999999884 4666666542 11222231
Q ss_pred -h-hH-HHHHHHHHHHhC---CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--------ccCCCEEEEEec
Q 005661 271 -G-AR-RVRDLFSAAKKR---SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--------KQNEGIIVIAAT 336 (685)
Q Consensus 271 -~-~~-~ir~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--------~~~~~ViVIaaT 336 (685)
. .. .-...|..+... .++|||||||+.+. ..+.+.|+..|+.. ...+..++|+||
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~AT 156 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAAS 156 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcc
Confidence 1 11 012223222222 46799999998662 33455666666421 111223567788
Q ss_pred CCcCc---CcccccCCCCcccccccCCCCH-HHHHHHHHHHhhhhcc---------------------cCccc---HHHH
Q 005661 337 NFPES---LDKALVRPGRFDRHIVVPNPDV-EGRRQIMESHMSKVLK---------------------ADDVD---LMII 388 (685)
Q Consensus 337 N~p~~---LD~aLlRpgRFd~~I~i~~Pd~-~eR~~ILk~~l~~~~~---------------------~~~vd---l~~l 388 (685)
|.+.. +.+++++ ||...+.+|+|+. +++.+|++.+...... .-.++ .+.+
T Consensus 157 N~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i 234 (500)
T 3nbx_X 157 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELI 234 (500)
T ss_dssp SSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred ccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHH
Confidence 85322 3358888 9998999999987 7788999876531100 00111 1222
Q ss_pred Hh---------cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 389 AR---------GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 389 a~---------~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
+. ...|.|++.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 22 13588999999999999999999999999999998 544443
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.60 E-value=8.1e-16 Score=162.52 Aligned_cols=202 Identities=20% Similarity=0.284 Sum_probs=126.9
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh--
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV-- 268 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~-- 268 (685)
++|+|.++..+.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+.++|+.+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999998888877643 234589999999999999999999965 68999999998755322
Q ss_pred ---hhh------h-HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCC
Q 005661 269 ---GVG------A-RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEG 329 (685)
Q Consensus 269 ---g~~------~-~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~---------~~~~ 329 (685)
|.. . ......|..+. +++|||||||.+.. .....|+..++... ...+
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccCC
Confidence 110 0 01223454443 46999999998841 23344555554321 1346
Q ss_pred EEEEEecCCc-------CcCcccccCCCCcccccccCCCCHHHH----HHHHHHHhhhhcc-----cCccc---HHHHHh
Q 005661 330 IIVIAATNFP-------ESLDKALVRPGRFDRHIVVPNPDVEGR----RQIMESHMSKVLK-----ADDVD---LMIIAR 390 (685)
Q Consensus 330 ViVIaaTN~p-------~~LD~aLlRpgRFd~~I~i~~Pd~~eR----~~ILk~~l~~~~~-----~~~vd---l~~la~ 390 (685)
+.||++||.+ ..+++.|.. ||. .+.+..|+.++| ..++++++.+... ...++ +..+..
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 8999999975 123344444 554 455556665544 4477777654321 12333 344555
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 005661 391 GTPGFSGADLANLVNIAALKAAMDGAKAVTMADLE 425 (685)
Q Consensus 391 ~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~ 425 (685)
....-+.++|.++++.+...+ ....|+.+|+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 553335677778887776544 34567777663
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=1.2e-15 Score=175.24 Aligned_cols=219 Identities=21% Similarity=0.213 Sum_probs=137.6
Q ss_pred CcCCCcHHHHHHHHHHHHHhcC-chhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe----eccchhhhHh
Q 005661 194 SDVKGVDEAKQELEEIVHYLRD-PKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC----SGSEFEEMFV 268 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~-~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v----s~s~l~~~~~ 268 (685)
..|.|++++|+.+.-.+. .. +..........+.++||+||||||||++|+++|+.++..++.. ++..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~--~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALF--GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTT--CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHh--CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 457888888766632111 11 0000001122233799999999999999999999998776553 2222221111
Q ss_pred hh---hhH-HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc-----------ccCCCEEEE
Q 005661 269 GV---GAR-RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF-----------KQNEGIIVI 333 (685)
Q Consensus 269 g~---~~~-~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~ViVI 333 (685)
.. +.. .....+..| ..+|+||||||.+.. ...+.|+..|+.- ..+.++.||
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~-----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD-----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS-----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhCCH-----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 00 000 001122233 346999999998732 1234444445421 123568999
Q ss_pred EecCCcC-------------cCcccccCCCCccccc-ccCCCCHHHHHHHHHHHhhhhcc--------------------
Q 005661 334 AATNFPE-------------SLDKALVRPGRFDRHI-VVPNPDVEGRRQIMESHMSKVLK-------------------- 379 (685)
Q Consensus 334 aaTN~p~-------------~LD~aLlRpgRFd~~I-~i~~Pd~~eR~~ILk~~l~~~~~-------------------- 379 (685)
+|||.+. .|+++|++ |||..+ ..+.|+.+ ...|+++.+.....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999886 89999998 998654 55777777 88888877653210
Q ss_pred ---cCcc---cHHHHHhc--------------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 380 ---ADDV---DLMIIARG--------------TPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 380 ---~~~v---dl~~la~~--------------t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
.+.+ ....|... ..+.|.+.+.++++.|..+|..+++..|+.+|+.+|+.-+
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 0011 12223222 3578999999999999999999999999999999998754
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=1.4e-14 Score=173.18 Aligned_cols=203 Identities=23% Similarity=0.306 Sum_probs=136.3
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH--
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF-- 267 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~-- 267 (685)
+++|+|++++++.+...+...+..-. -..++..++||+||||||||++|++++..+ +.+|+.++|+++.+..
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46799999999999888875321000 001122379999999999999999999998 7899999999875531
Q ss_pred ---hhh-----hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc---------cCCCE
Q 005661 268 ---VGV-----GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK---------QNEGI 330 (685)
Q Consensus 268 ---~g~-----~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~---------~~~~V 330 (685)
.|. +......+....+...++||||||||.+. ..+++.|+..|+.-. ...++
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~ 702 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH-----------PDVFNILLQILDDGRLTDSHGRTVDFRNT 702 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSC-----------HHHHHHHHHHHTTTEECCSSSCCEECTTE
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC-----------HHHHHHHHHHhccCceECCCCCEeccCCe
Confidence 111 11111334444555667999999999872 345677777776432 12368
Q ss_pred EEEEecCCc--------------------------CcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcc-----
Q 005661 331 IVIAATNFP--------------------------ESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLK----- 379 (685)
Q Consensus 331 iVIaaTN~p--------------------------~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~----- 379 (685)
+||+|||.. ..+.|.|+. ||+..+.+++|+.+++..|+++++.+...
T Consensus 703 iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 703 VIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp EEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999972 134566665 99999999999999999999999874321
Q ss_pred --cCccc---HHHHHhcCC--CCCHHHHHHHHHHHHHHH
Q 005661 380 --ADDVD---LMIIARGTP--GFSGADLANLVNIAALKA 411 (685)
Q Consensus 380 --~~~vd---l~~la~~t~--G~sgadI~~lv~~A~~~A 411 (685)
...++ +..|+.... .++.++|+++|+.+...+
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 11222 334555433 456788888888766544
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=4.6e-14 Score=150.61 Aligned_cols=202 Identities=19% Similarity=0.225 Sum_probs=132.8
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC-----CEEEeeccch
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-----PFFSCSGSEF 263 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-----~fi~vs~s~l 263 (685)
.+.+|++++|++++++.|...+. ....|. +||+||||||||++++++|+.+.. .++.+++++.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~-----------~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVD-----------EGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHH-----------TTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CCCcHHHhcCcHHHHHHHHHHHh-----------cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 45679999999999888887665 234454 999999999999999999998632 3666666543
Q ss_pred hhhHhhhhhHHHHHHHHHHHh------CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 264 EEMFVGVGARRVRDLFSAAKK------RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 264 ~~~~~g~~~~~ir~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
.. ...+++.+..... ..+.|++|||+|.+.. ...+.|+..++. ....+.+|.+||
T Consensus 88 ~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~--~~~~~~~il~~n 148 (340)
T 1sxj_C 88 RG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIER--YTKNTRFCVLAN 148 (340)
T ss_dssp CS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHH--TTTTEEEEEEES
T ss_pred cc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhc--CCCCeEEEEEec
Confidence 21 1233433333221 2368999999998831 234556666663 345677888899
Q ss_pred CcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH---
Q 005661 338 FPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGTPGFSGADLANLVNIAALKAAM--- 413 (685)
Q Consensus 338 ~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~--- 413 (685)
.+..+.+++.+ |+. .+.+++++.++..+++...+...... .+.....++..+.| +++.+++.....+..
T Consensus 149 ~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G----~~r~~~~~l~~~~~~~~~ 221 (340)
T 1sxj_C 149 YAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG----DMRRVLNVLQSCKATLDN 221 (340)
T ss_dssp CGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT----CHHHHHHHTTTTTTTTCS
T ss_pred CccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhcCC
Confidence 99999999998 876 78899999999999998888543221 11224456655543 555444433222211
Q ss_pred cCCCccCHHHHHHHH
Q 005661 414 DGAKAVTMADLEYAK 428 (685)
Q Consensus 414 ~~~~~It~edl~~A~ 428 (685)
.+...|+.+++..++
T Consensus 222 ~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 222 PDEDEISDDVIYECC 236 (340)
T ss_dssp SSCCCBCHHHHHHHT
T ss_pred cccccccHHHHHHHh
Confidence 122368888876653
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=3.4e-14 Score=151.58 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=124.8
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC--------------
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV-------------- 253 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~-------------- 253 (685)
..+.+|++++|++++++.|+..+. . ..+.|. ++|+||||+|||++++++++++..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 445689999999999887775541 1 234455 999999999999999999996421
Q ss_pred ---------------CEEEeeccchhhhHhhhhhHHHHHHHHHHH--------------hCCCeEEEEcCchhhcCCCCC
Q 005661 254 ---------------PFFSCSGSEFEEMFVGVGARRVRDLFSAAK--------------KRSPCIIFIDEIDAIGGSRNP 304 (685)
Q Consensus 254 ---------------~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~--------------~~~P~ILfIDEID~l~~~r~~ 304 (685)
+++.++.++... .....+++.+..+. ...|.||+|||++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~----- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred ccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----
Confidence 123333322110 00012444444432 2357799999999862
Q ss_pred CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-C-c
Q 005661 305 KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA-D-D 382 (685)
Q Consensus 305 ~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~-~-~ 382 (685)
....+.|+..++.. ..++.+|.+||.++.+.+.+++ |+ ..+.|++|+.+++.++++..+.+.... + +
T Consensus 148 ------~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (354)
T 1sxj_E 148 ------KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETK 216 (354)
T ss_dssp ------HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCS
T ss_pred ------HHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcH
Confidence 22344555555543 3468888999999999999988 88 688999999999999999988754332 2 3
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHHH
Q 005661 383 VDLMIIARGTPGFSGADLANLVNIAA 408 (685)
Q Consensus 383 vdl~~la~~t~G~sgadI~~lv~~A~ 408 (685)
-.+..++..+.| +.+++.++++.+.
T Consensus 217 ~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 217 DILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 335667777654 5556666665444
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=4.2e-13 Score=145.37 Aligned_cols=229 Identities=15% Similarity=0.122 Sum_probs=150.5
Q ss_pred CCCCCcCCCcHHHHHHHHHHH-HHhcCchhhhhhCCCCCCeEEE--EcCCCCChHHHHHHHHHhc---------CCCEEE
Q 005661 190 NTKFSDVKGVDEAKQELEEIV-HYLRDPKRFTRLGGKLPKGVLL--VGPPGTGKTMLARAIAGEA---------GVPFFS 257 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v-~~l~~~~~~~~~g~~~pkgvLL--~GPPGTGKT~LAralA~e~---------~~~fi~ 257 (685)
....++++|.++..+.|.+.+ ...... ....+..++| +||||+|||++++.+++.+ +.++++
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 334578999999988888877 543211 0023557999 9999999999999999876 567788
Q ss_pred eeccchhh------hH---hh-------hh-hHHHHHHHHHHH-hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHH
Q 005661 258 CSGSEFEE------MF---VG-------VG-ARRVRDLFSAAK-KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLV 319 (685)
Q Consensus 258 vs~s~l~~------~~---~g-------~~-~~~ir~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~ 319 (685)
++|..... .. .+ .. ......+..... ...|.+|+|||+|.+...+. .. ...+..++.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~~----~~~l~~l~~ 166 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-IA----AEDLYTLLR 166 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-SC----HHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-cc----hHHHHHHHH
Confidence 88743211 10 01 00 111222222222 35689999999999854211 01 233444444
Q ss_pred Hhhcccc-C--CCEEEEEecCCcC---cCc---ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcc---cHHH
Q 005661 320 ELDGFKQ-N--EGIIVIAATNFPE---SLD---KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDV---DLMI 387 (685)
Q Consensus 320 ~ld~~~~-~--~~ViVIaaTN~p~---~LD---~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~v---dl~~ 387 (685)
.++.... . .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++.++........+ .+..
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 4443321 2 6788998888665 344 55655 555559999999999999999887643322222 2445
Q ss_pred HHhcCC------CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Q 005661 388 IARGTP------GFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIM 432 (685)
Q Consensus 388 la~~t~------G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~ 432 (685)
++..+. | +++.+.++++.|...+..++...++.+++..++....
T Consensus 245 i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 245 ISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 666666 5 6788899999988888888888899999998887643
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.45 E-value=1.1e-13 Score=159.23 Aligned_cols=216 Identities=24% Similarity=0.306 Sum_probs=133.5
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCC---EEEeeccchh
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP---FFSCSGSEFE 264 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~---fi~vs~s~l~ 264 (685)
.++..|++++|++.+++.+...+.. ...++|+||||||||++|++|++.+... .+.+.+....
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred ccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 4567899999999998777766541 2379999999999999999999987432 1222111110
Q ss_pred --------------hhHh------------------------------------------hhhhHHHHHHHH--------
Q 005661 265 --------------EMFV------------------------------------------GVGARRVRDLFS-------- 280 (685)
Q Consensus 265 --------------~~~~------------------------------------------g~~~~~ir~lF~-------- 280 (685)
.... .........+|.
T Consensus 101 ~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~ 180 (604)
T 3k1j_A 101 ENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ 180 (604)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC-
T ss_pred ccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh
Confidence 0000 000000111221
Q ss_pred ---------------HHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc-------------------cc
Q 005661 281 ---------------AAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF-------------------KQ 326 (685)
Q Consensus 281 ---------------~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~-------------------~~ 326 (685)
......+++|||||+|.+. .... +.|+..|+.- ..
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~--------~~~q---~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS--------LKMQ---QSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGGSC--------HHHH---HHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred cCCccccccccccCceeeecCCCEEEEechhhCC--------HHHH---HHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 0112346799999999872 2233 3444444311 11
Q ss_pred CCCEEEEEecCCc--CcCcccccCCCCcc---cccccCC--C-CHHHHHHHHHHHhhhhc---ccCccc---HHHHHh--
Q 005661 327 NEGIIVIAATNFP--ESLDKALVRPGRFD---RHIVVPN--P-DVEGRRQIMESHMSKVL---KADDVD---LMIIAR-- 390 (685)
Q Consensus 327 ~~~ViVIaaTN~p--~~LD~aLlRpgRFd---~~I~i~~--P-d~~eR~~ILk~~l~~~~---~~~~vd---l~~la~-- 390 (685)
..++.||++||+. +.++++|++ ||+ ..+.++. + ..+....+++.+.+... ....++ +..|.+
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 2468899999986 679999998 886 3444432 2 34455556655443322 122333 233333
Q ss_pred -cCCCC------CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 005661 391 -GTPGF------SGADLANLVNIAALKAAMDGAKAVTMADLEYAKDK 430 (685)
Q Consensus 391 -~t~G~------sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~ 430 (685)
+..|- +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 22553 78999999999999999899999999999999864
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.43 E-value=2.5e-13 Score=127.43 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=80.6
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhhh
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVG 271 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~~ 271 (685)
+++|.++..+.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 68899999888888776542 234579999999999999999999987 78999 999987654
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 272 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 272 ~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
......|..+. +++|||||||.+. . .....|+..|. ....++.+|++||.+
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~--------~---~~q~~Ll~~l~--~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLT--------R---EQQYHLVQLQS--QEHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSC--------H---HHHHHHHHHHH--SSSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCC--------H---HHHHHHHHHHh--hcCCCEEEEEECCcC
Confidence 23445566653 4699999999883 1 22334444443 234567889999964
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.42 E-value=7.8e-14 Score=130.74 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=80.1
Q ss_pred cCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHH
Q 005661 195 DVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARR 274 (685)
Q Consensus 195 dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ 274 (685)
+++|.+++++.+.+.+..+. ..+.+|||+||||||||++|++++...+ +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 68899999998888877532 2245799999999999999999999988 99999999876543
Q ss_pred HHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 275 VRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 275 ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
...+|..+. +++|||||+|.+.. ..+.. |+..++.. ...++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~--------~~q~~---Ll~~l~~~-~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR--------NIQTG---ITFIIGKA-ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH--------HHHHH---HHHHHHHH-TTTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH--------HHHHH---HHHHHHhC-CCCCEEEEEecCCC
Confidence 455565553 46999999998831 22333 33333322 24568899999864
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.38 E-value=5.2e-12 Score=134.80 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=111.9
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCCC------------------------EEEeeccchhhhHhhhhhHHHHHHH
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVP------------------------FFSCSGSEFEEMFVGVGARRVRDLF 279 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~~------------------------fi~vs~s~l~~~~~g~~~~~ir~lF 279 (685)
.+.|..+||+||||+|||++|+++|+.+.+. ++.++..+- -...+...+++++
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVT 97 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHH
Confidence 4677889999999999999999999987543 233322100 0012334577777
Q ss_pred HHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccc
Q 005661 280 SAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRH 355 (685)
Q Consensus 280 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~ 355 (685)
+.+.. ..+.|++|||+|.+. ....+.|+..++. +..++++|.+||.++.+.+.+++ |+. .
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~ 161 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR-L 161 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-E
T ss_pred HHHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-e
Confidence 76643 346899999999883 2346778888874 45678999999999999999998 774 7
Q ss_pred cccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHH
Q 005661 356 IVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNI 406 (685)
Q Consensus 356 I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~ 406 (685)
+.|++|+.++..++++... .-.+-.+..++..+.| +.+.+.++++.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred eeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 8999999999999988775 1122234556666654 55555555543
No 84
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.37 E-value=6.2e-13 Score=166.07 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=110.0
Q ss_pred CCCCCCCcCCCcHHHHHHHHHHHHH-hcC----------chhhhh------hCCC----------CCCe--EEEEcCCCC
Q 005661 188 ESNTKFSDVKGVDEAKQELEEIVHY-LRD----------PKRFTR------LGGK----------LPKG--VLLVGPPGT 238 (685)
Q Consensus 188 ~~~~~f~dV~G~de~k~~L~e~v~~-l~~----------~~~~~~------~g~~----------~pkg--vLL~GPPGT 238 (685)
...++|+||.|.+++|+++.+.+.+ ++. ++.|+. .|.. +|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 3568999999999999999988887 532 556655 3333 6777 999999999
Q ss_pred ChHHHHHHHHHhc---CCCEEEeeccchh------------hhHhhh----hhHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005661 239 GKTMLARAIAGEA---GVPFFSCSGSEFE------------EMFVGV----GARRVRDLFSAAKKRSPCIIFIDEIDAIG 299 (685)
Q Consensus 239 GKT~LAralA~e~---~~~fi~vs~s~l~------------~~~~g~----~~~~ir~lF~~A~~~~P~ILfIDEID~l~ 299 (685)
|||+||++++.+. |-|.++++..+.. ++|++. +++.++.+|..|+...||+||+||+|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5566666665533 344556 78899999999999999999999999998
Q ss_pred CCCC---C-C--chHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 300 GSRN---P-K--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 300 ~~r~---~-~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
+.+. . . +.....+.++++|.+|++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 7631 1 1 2244567899999999998888888888 77765
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.36 E-value=2.3e-12 Score=108.74 Aligned_cols=75 Identities=32% Similarity=0.419 Sum_probs=72.0
Q ss_pred CCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Q 005661 359 PNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMM 433 (685)
Q Consensus 359 ~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~ 433 (685)
|+||.++|.+||+.|+++.....++|+..|+..|+||||+||.++|++|++.|.+++...|+++||..|+++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999988889999999999999999999999999999999999999999999999999864
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.33 E-value=3.3e-12 Score=110.00 Aligned_cols=78 Identities=29% Similarity=0.359 Sum_probs=73.7
Q ss_pred ccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcc
Q 005661 357 VVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMG 434 (685)
Q Consensus 357 ~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g 434 (685)
.-.+||.++|.+||+.++++.....++|+..||..|.||||+||.++|++|++.|.++....|+++||..|++++.++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 457899999999999999999888899999999999999999999999999999999999999999999999998764
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.31 E-value=4e-12 Score=109.94 Aligned_cols=79 Identities=28% Similarity=0.361 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcccccccc
Q 005661 362 DVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGSERKSA 440 (685)
Q Consensus 362 d~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g~~~~~~ 440 (685)
|.++|.+||+.|+++.....++|+..||..|+||||+||.++|++|++.|.+++...|+++||..|++++.+|.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 5689999999999999888999999999999999999999999999999999999999999999999999998877654
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.25 E-value=1.3e-11 Score=134.60 Aligned_cols=207 Identities=20% Similarity=0.241 Sum_probs=126.7
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHh-
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFV- 268 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~- 268 (685)
|.+++|.++..+++.+.+..+... ...|||+|++|||||++|++++... +.||+.++|+.+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 567888888888888777764433 2368999999999999999998876 47999999998765321
Q ss_pred ----hhhh-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccc-------cCCCE
Q 005661 269 ----GVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFK-------QNEGI 330 (685)
Q Consensus 269 ----g~~~-------~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~-------~~~~V 330 (685)
|... ......|..|. .++||||||+.+. ...+..+.++|..-. +. ...++
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~--------~~~q~~Ll~~l~~~~-~~~~g~~~~~~~~~ 273 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELS--------LEAQAKLLRVIESGK-FYRLGGRKEIEVNV 273 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCC--------HHHHHHHHHHHHHSE-ECCBTCCSBEECCC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCC--------HHHHHHHHHHHhcCc-EEeCCCCceeeccE
Confidence 1100 01223455543 3599999999883 223333444433211 11 12368
Q ss_pred EEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHHHH----HHHHHhhhhc----cc-CcccHHH---HHhc
Q 005661 331 IVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGRRQ----IMESHMSKVL----KA-DDVDLMI---IARG 391 (685)
Q Consensus 331 iVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR~~----ILk~~l~~~~----~~-~~vdl~~---la~~ 391 (685)
.||++||..- . .+.+.|+|.. .+.+..|+.++|.+ ++++++.+.. .. ..++.+. +..+
T Consensus 274 rii~at~~~l--~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~ 350 (387)
T 1ny5_A 274 RILAATNRNI--K-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 350 (387)
T ss_dssp EEEEEESSCH--H-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred EEEEeCCCCH--H-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 8999999631 1 2223344433 34566777777644 5566665431 11 2244333 4444
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 005661 392 TPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYA 427 (685)
Q Consensus 392 t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A 427 (685)
..--+.++|+|+++.|+..+ ....|+.+|+...
T Consensus 351 ~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 351 PWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp CCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 32224468888888777654 4468999998654
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=3e-11 Score=127.73 Aligned_cols=142 Identities=11% Similarity=0.139 Sum_probs=104.5
Q ss_pred CcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc------CCCEEEeeccchhhhHhhhh
Q 005661 198 GVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA------GVPFFSCSGSEFEEMFVGVG 271 (685)
Q Consensus 198 G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~------~~~fi~vs~s~l~~~~~g~~ 271 (685)
|++++.+.|+..++. .+ +..+||+||||+|||++|+++|+.+ ...|+.++.+.- ..+
T Consensus 1 g~~~~~~~L~~~i~~-----------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHC-----------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 566676666666542 12 3479999999999999999999864 346777765420 123
Q ss_pred hHHHHHHHHHHHhC----CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccccc
Q 005661 272 ARRVRDLFSAAKKR----SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALV 347 (685)
Q Consensus 272 ~~~ir~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLl 347 (685)
...+|++++.+... ...|+||||+|.+. ....|.|+..|+. +...+++|.+||.++.+.++++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt-----------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~ 130 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIK 130 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC-----------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHH
Confidence 34578888777532 24799999999883 3346778888873 5567888888899999999999
Q ss_pred CCCCcccccccCCCCHHHHHHHHHHHh
Q 005661 348 RPGRFDRHIVVPNPDVEGRRQIMESHM 374 (685)
Q Consensus 348 RpgRFd~~I~i~~Pd~~eR~~ILk~~l 374 (685)
+ | .+.|++|+.++..++++..+
T Consensus 131 S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 131 S--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--T---SEEEECCCCHHHHHHHHHHH
T ss_pred c--e---eEeCCCCCHHHHHHHHHHHh
Confidence 8 7 78999999999999888876
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.22 E-value=7.1e-11 Score=153.44 Aligned_cols=139 Identities=23% Similarity=0.341 Sum_probs=98.5
Q ss_pred CCeEEEEcCCCCChHHHH-HHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHH---------------hCCCeEE
Q 005661 227 PKGVLLVGPPGTGKTMLA-RAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAK---------------KRSPCII 290 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LA-ralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~---------------~~~P~IL 290 (685)
.+++||+||||||||++| +.++...+.+++.++++..... ..+...+.... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 359999999999999999 4555555788888888765432 23333333320 2335899
Q ss_pred EEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccC--------CCEEEEEecCCcC-----cCcccccCCCCcccccc
Q 005661 291 FIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQN--------EGIIVIAATNFPE-----SLDKALVRPGRFDRHIV 357 (685)
Q Consensus 291 fIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~--------~~ViVIaaTN~p~-----~LD~aLlRpgRFd~~I~ 357 (685)
||||+|.....+ .+.+.....+.+++. ..++... .++.+|+|||+|. .|+++++| || ..+.
T Consensus 1341 FiDEinmp~~d~--yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~ 1414 (2695)
T 4akg_A 1341 FCDEINLPKLDK--YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILY 1414 (2695)
T ss_dssp EEETTTCSCCCS--SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEE
T ss_pred Eecccccccccc--cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEE
Confidence 999999643222 222334556666653 3333221 3589999999994 79999999 88 6899
Q ss_pred cCCCCHHHHHHHHHHHhhhh
Q 005661 358 VPNPDVEGRRQIMESHMSKV 377 (685)
Q Consensus 358 i~~Pd~~eR~~ILk~~l~~~ 377 (685)
++.|+.+++..|+..+++..
T Consensus 1415 i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.15 E-value=1.5e-10 Score=111.79 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=81.3
Q ss_pred CCCCCCcCCCc-HHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccch
Q 005661 189 SNTKFSDVKGV-DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEF 263 (685)
Q Consensus 189 ~~~~f~dV~G~-de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l 263 (685)
.+.+|+++++. +..++.+..+.+++.+. ....+.+++|+||||||||+|++++++.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45689998873 33444444444443332 22235689999999999999999999877 667778887776
Q ss_pred hhhHhhhhhH-HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 264 EEMFVGVGAR-RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 264 ~~~~~g~~~~-~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
...+...... ....++... ..|.+|+|||++..+ ...+....+.+++.... ..+..+|.+||.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER------LSDWQRELISYIITYRY----NNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC------CCHHHHHHHHHHHHHHH----HTTCEEEEECCCCS
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCCCh
Confidence 6543321110 001222222 357899999998542 22334455556654432 23457777888653
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.11 E-value=1.3e-10 Score=98.94 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhccc
Q 005661 362 DVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGS 435 (685)
Q Consensus 362 d~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g~ 435 (685)
|.++|.+||+.|+++.....++|+..|+..|.||||+||.++|++|++.|.+++...|+++||..|+.++.++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 68899999999999988888999999999999999999999999999999999989999999999999987643
No 93
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.04 E-value=1.1e-10 Score=99.51 Aligned_cols=73 Identities=26% Similarity=0.252 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcccc
Q 005661 364 EGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKIMMGSE 436 (685)
Q Consensus 364 ~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v~~g~~ 436 (685)
++|.+||+.|+++.....++|+..|+..|+||||+||.++|++|++.|.+++...|+++||..|++++..+..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4789999999999888889999999999999999999999999999999999999999999999999876543
No 94
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.03 E-value=7.1e-10 Score=120.10 Aligned_cols=190 Identities=23% Similarity=0.318 Sum_probs=111.7
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeeccchhhhH----
Q 005661 194 SDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSEFEEMF---- 267 (685)
Q Consensus 194 ~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s~l~~~~---- 267 (685)
.+++|.+....++.+.+..+... ...+|++|++||||+++|+++....+. +|+.++|+.+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 46889999888888777754432 236999999999999999999987754 39999999875431
Q ss_pred -hhhhh-------HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhc--ccc-------CCCE
Q 005661 268 -VGVGA-------RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDG--FKQ-------NEGI 330 (685)
Q Consensus 268 -~g~~~-------~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~--~~~-------~~~V 330 (685)
.|... ......|+.|. .++||||||+.+. ...+ ..|+..++. +.. .-++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~--------~~~Q---~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELD--------QRVQ---AKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSC--------HHHH---HHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCC--------HHHH---HHHHHHHHhCCcccCCCCcceeeee
Confidence 11100 01123455543 3599999999883 2233 344444432 111 1257
Q ss_pred EEEEecCCcCcCcccccCCCCccc-------ccccCCCCHHHH----HHHHHHHhhhhcc-----cCcccHHHH---Hhc
Q 005661 331 IVIAATNFPESLDKALVRPGRFDR-------HIVVPNPDVEGR----RQIMESHMSKVLK-----ADDVDLMII---ARG 391 (685)
Q Consensus 331 iVIaaTN~p~~LD~aLlRpgRFd~-------~I~i~~Pd~~eR----~~ILk~~l~~~~~-----~~~vdl~~l---a~~ 391 (685)
.+|++||.. +. .+...|+|.. .+.+..|..++| ..++++++.+... ...++-+.+ ..+
T Consensus 265 rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 265 RVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp EEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred EEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 899999953 22 2223344433 345556666655 4466677654321 123444444 333
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 005661 392 TPGFSGADLANLVNIAALK 410 (685)
Q Consensus 392 t~G~sgadI~~lv~~A~~~ 410 (685)
..--+.++|+|++..|...
T Consensus 342 ~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHh
Confidence 3222345666666665543
No 95
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.00 E-value=2.6e-10 Score=111.89 Aligned_cols=103 Identities=24% Similarity=0.281 Sum_probs=64.8
Q ss_pred CCCCCcCCCcHH-HHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh
Q 005661 190 NTKFSDVKGVDE-AKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE 265 (685)
Q Consensus 190 ~~~f~dV~G~de-~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~ 265 (685)
+.+|+++++.+. .++.+..+..++.+.. ....|++++|+||||||||++|+++++.+ +.+++.+++.++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYE-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCC-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhh-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 468999998663 3333333333333221 01134799999999999999999999887 67898899887765
Q ss_pred hHhhhh-hHHHHHHHHHHHhCCCeEEEEcCchhhc
Q 005661 266 MFVGVG-ARRVRDLFSAAKKRSPCIIFIDEIDAIG 299 (685)
Q Consensus 266 ~~~g~~-~~~ir~lF~~A~~~~P~ILfIDEID~l~ 299 (685)
.+.... ...+..++..... +.+|||||++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 432211 1112333443333 3599999997653
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.94 E-value=2.3e-09 Score=118.37 Aligned_cols=211 Identities=18% Similarity=0.150 Sum_probs=120.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHH-HHhcCCCEEEeeccch-hhhHhhh---
Q 005661 196 VKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAI-AGEAGVPFFSCSGSEF-EEMFVGV--- 270 (685)
Q Consensus 196 V~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAral-A~e~~~~fi~vs~s~l-~~~~~g~--- 270 (685)
|.|++.+|+.|.-.+- ....+ ..-..+|||.|+||| ||++|+++ ++.+....+ +.+..- .....+.
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEc
Confidence 7888888766653321 11100 112236999999999 99999999 776654333 221100 0000000
Q ss_pred --hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh-------ccccCCCEEEEEecCCcC-
Q 005661 271 --GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD-------GFKQNEGIIVIAATNFPE- 340 (685)
Q Consensus 271 --~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld-------~~~~~~~ViVIaaTN~p~- 340 (685)
+...-...+..|. ..|+|||||+.+. ..++..|+..|+ |..-+.++.||+|+|..+
T Consensus 286 ~tG~~~~~G~l~LAd---gGvl~lDEIn~~~-----------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 286 DRGWALRAGAAVLAD---GGILAVDHLEGAP-----------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSSEEEEECHHHHTT---TSEEEEECCTTCC-----------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCCcccCCCeeEEcC---CCeeehHhhhhCC-----------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 0000011222332 3599999999873 233444444444 222345789999999865
Q ss_pred ----------cCcccccCCCCccccc-ccCCCCHHHHH---------HHHHHHh---hhhcccCcccH---HH-------
Q 005661 341 ----------SLDKALVRPGRFDRHI-VVPNPDVEGRR---------QIMESHM---SKVLKADDVDL---MI------- 387 (685)
Q Consensus 341 ----------~LD~aLlRpgRFd~~I-~i~~Pd~~eR~---------~ILk~~l---~~~~~~~~vdl---~~------- 387 (685)
.|+++++. |||..+ .++.|+.+... +.++.+. +.......++- +.
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~ 429 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET 429 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence 67888888 998754 45666654321 1222222 20101111110 00
Q ss_pred H--H--------hcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 388 I--A--------RGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 388 l--a--------~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
+ . ....|.|++.+..+++-|..+|..++++.|+.+|+..|++-+
T Consensus 430 tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 430 RREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 0 0 035688999999999999999999999999999999998754
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.87 E-value=1.3e-07 Score=99.47 Aligned_cols=188 Identities=15% Similarity=0.103 Sum_probs=114.8
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchh------
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE------ 264 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~------ 264 (685)
.....++|.++..+.|.+ +. . ..++|+||+|+|||+|++.++++.+.+++++++....
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 345788999987766665 32 2 3799999999999999999999987778888776430
Q ss_pred -hhHhhh---------------------------------------hhHHHHHHHHHHHhC--CCeEEEEcCchhhcCCC
Q 005661 265 -EMFVGV---------------------------------------GARRVRDLFSAAKKR--SPCIIFIDEIDAIGGSR 302 (685)
Q Consensus 265 -~~~~g~---------------------------------------~~~~ir~lF~~A~~~--~P~ILfIDEID~l~~~r 302 (685)
..+... ....+..++...... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 000000 011244455554442 38999999999885421
Q ss_pred CCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCccc-----cc--CCCCcccccccCCCCHHHHHHHHHHHhh
Q 005661 303 NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKA-----LV--RPGRFDRHIVVPNPDVEGRRQIMESHMS 375 (685)
Q Consensus 303 ~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~a-----Ll--RpgRFd~~I~i~~Pd~~eR~~ILk~~l~ 375 (685)
... ....+..+... ..++.+|.+++....+... .. -.||+...+.+++.+.++..+++...+.
T Consensus 154 ~~~----~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 154 GVN----LLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TCC----CHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred chh----HHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 111 12223333221 1356666666643222211 00 1246666889999999999999998775
Q ss_pred hhcccCcccHHHHHhcCCCCCHHHHHHHHHH
Q 005661 376 KVLKADDVDLMIIARGTPGFSGADLANLVNI 406 (685)
Q Consensus 376 ~~~~~~~vdl~~la~~t~G~sgadI~~lv~~ 406 (685)
......+ +...+...+.| .+.-+..++..
T Consensus 224 ~~~~~~~-~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 224 EADIDFK-DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHTCCCC-CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HcCCCCC-cHHHHHHHhCC-CHHHHHHHHHH
Confidence 4322222 23667777876 45556666543
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.83 E-value=1.2e-09 Score=115.55 Aligned_cols=117 Identities=22% Similarity=0.255 Sum_probs=71.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCC--EEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVP--FFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP 304 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~--fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~ 304 (685)
...++|+||||||||+||..++...|.+ |+.+...+..+.+.......+..+++...... +||||+++.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 3457999999999999999999875544 55552233222222333444555666665554 9999999998543321
Q ss_pred -CchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccc
Q 005661 305 -KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKAL 346 (685)
Q Consensus 305 -~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aL 346 (685)
.......+.+.+++..|.++....++.+|+++| +...|+++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 111111345666777776666666788898988 55556554
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.79 E-value=6.1e-09 Score=98.41 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRN 303 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~ 303 (685)
...++|+||+|+|||+|++++++.+ |...+++++.++... +....|.+|+|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH--
Confidence 4579999999999999999999987 777888888776543 11235789999999875321
Q ss_pred CCchHHHHHHHHHHHHHhhccccCCCEEEEEecC-CcCcCc--ccccCCCCcccccc
Q 005661 304 PKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN-FPESLD--KALVRPGRFDRHIV 357 (685)
Q Consensus 304 ~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN-~p~~LD--~aLlRpgRFd~~I~ 357 (685)
.+..+.+++..+. ..+..++|.+|| .|..+. +.|.+ |+..-+.
T Consensus 99 ------~~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~ 144 (149)
T 2kjq_A 99 ------EQALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLV 144 (149)
T ss_dssp ------HHHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEE
T ss_pred ------HHHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCee
Confidence 1334444444332 222332444666 454443 66665 6654433
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.73 E-value=3.5e-09 Score=111.84 Aligned_cols=101 Identities=23% Similarity=0.288 Sum_probs=60.9
Q ss_pred CCCCCcCCCcH-HHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccchh
Q 005661 190 NTKFSDVKGVD-EAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFE 264 (685)
Q Consensus 190 ~~~f~dV~G~d-e~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l~ 264 (685)
+.+|+++.+.+ .....+..+..++.+. +...+.+++|+||||||||+||++++.++ +.+++.+++.++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 35799998754 3222333333333221 11135699999999999999999999865 4788888888776
Q ss_pred hhHhhhh-hHHHHHHHHHHHhCCCeEEEEcCchhh
Q 005661 265 EMFVGVG-ARRVRDLFSAAKKRSPCIIFIDEIDAI 298 (685)
Q Consensus 265 ~~~~g~~-~~~ir~lF~~A~~~~P~ILfIDEID~l 298 (685)
..+.... ......++.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 5443211 111122233332 3459999999755
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.67 E-value=1e-06 Score=92.39 Aligned_cols=189 Identities=16% Similarity=0.123 Sum_probs=110.7
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchh------
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFE------ 264 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~------ 264 (685)
..-+.++|.++..+.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++++++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 3446789999988888776642 1 4799999999999999999999886 6666664331
Q ss_pred ------hhHh--------------------hhh----hHHHHHHHHH----HHhCCCeEEEEcCchhhcCCCCCCchHHH
Q 005661 265 ------EMFV--------------------GVG----ARRVRDLFSA----AKKRSPCIIFIDEIDAIGGSRNPKDQQYM 310 (685)
Q Consensus 265 ------~~~~--------------------g~~----~~~ir~lF~~----A~~~~P~ILfIDEID~l~~~r~~~~~~~~ 310 (685)
..+. +.. ...+..++.. +....|.+|+|||++.+..... ......
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~~~~ 151 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGGKEL 151 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTTHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cchhhH
Confidence 0000 000 0122333332 2222489999999998853100 011122
Q ss_pred HHHHHHHHHHhhccccCCCEEEEEecCCcCcCc---------ccccCCCCcccccccCCCCHHHHHHHHHHHhhhhccc-
Q 005661 311 KMTLNQLLVELDGFKQNEGIIVIAATNFPESLD---------KALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKA- 380 (685)
Q Consensus 311 ~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD---------~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~- 380 (685)
...+..++.. ..++.+|.++.....+. ..+ .||+...+.+++.+.++..++++..+......
T Consensus 152 ~~~L~~~~~~------~~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~ 223 (350)
T 2qen_A 152 LALFAYAYDS------LPNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV 223 (350)
T ss_dssp HHHHHHHHHH------CTTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHh------cCCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2333333221 13566666655432111 112 24666688999999999999998876543221
Q ss_pred CcccHHHHHhcCCCCCHHHHHHHHH
Q 005661 381 DDVDLMIIARGTPGFSGADLANLVN 405 (685)
Q Consensus 381 ~~vdl~~la~~t~G~sgadI~~lv~ 405 (685)
.+-....+...+.| .+.-+..++.
T Consensus 224 ~~~~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 224 PENEIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp CHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 12234556677766 4555655554
No 102
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.65 E-value=2.1e-08 Score=108.81 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=79.3
Q ss_pred hCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcC-
Q 005661 222 LGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGG- 300 (685)
Q Consensus 222 ~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~- 300 (685)
++...+..++|+||||+||||+++++++..+..++.+....-...+ .+. .....+++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~------~lg------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF------ELG------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHH------HHG------GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHH------HHH------HhcchhHHHHHHHHHHHHH
Confidence 3677777899999999999999999999887776654432211000 111 112346789999998865
Q ss_pred CCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCC
Q 005661 301 SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPN 360 (685)
Q Consensus 301 ~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~ 360 (685)
.+......... ....+...++| .+.|+++||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~~~~~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22111111111 22334444554 45678899999999 79999999998887755
No 103
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.63 E-value=1.9e-08 Score=99.75 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=82.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh--------cC-CCEEEeeccchhhhHh----------hhhhH--HHHHHHHHH--H
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE--------AG-VPFFSCSGSEFEEMFV----------GVGAR--RVRDLFSAA--K 283 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e--------~~-~~fi~vs~s~l~~~~~----------g~~~~--~ir~lF~~A--~ 283 (685)
+-..|++|+||||||++|..++.. .| .+++.+++.++..... ..... ....+++.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 346899999999999999886433 45 7887777765542211 00000 112233321 2
Q ss_pred hCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCH
Q 005661 284 KRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDV 363 (685)
Q Consensus 284 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~ 363 (685)
...++||+|||++.+.+.+...... ..++..+.. ....++-||.+|+.++.|+.++++ |++.++++++|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccchh------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 3447899999999997654321111 124444443 234567778888889999999887 9999998887654
Q ss_pred HH
Q 005661 364 EG 365 (685)
Q Consensus 364 ~e 365 (685)
..
T Consensus 156 ~~ 157 (199)
T 2r2a_A 156 GM 157 (199)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.60 E-value=3.5e-07 Score=119.37 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=107.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCch
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ 307 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 307 (685)
.|+++.||+|||||.+++++|+.+|.+++.++|++-.+. ..+..+|..+... ++++++||++.+.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~~-------- 710 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRLD-------- 710 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSSC--------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhcC--------
Confidence 579999999999999999999999999999999875442 3345666655443 4799999999763
Q ss_pred HHHHHHHHHHH----HHhhc-----------cccCCCEEEEEecCC----cCcCcccccCCCCcccccccCCCCHHHHHH
Q 005661 308 QYMKMTLNQLL----VELDG-----------FKQNEGIIVIAATNF----PESLDKALVRPGRFDRHIVVPNPDVEGRRQ 368 (685)
Q Consensus 308 ~~~~~~l~~LL----~~ld~-----------~~~~~~ViVIaaTN~----p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ 368 (685)
......+.+.+ ..+.. +.-+.++.|++|.|. ...|+++|++ || +.|.+..||.+...+
T Consensus 711 ~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 711 EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 22333333332 22211 122456778889983 3468899987 88 689999999999888
Q ss_pred HHHHHhhh---hccc-CcccHHHHH-hc-----CCCCCHHHHHHHHHHHHHHH
Q 005661 369 IMESHMSK---VLKA-DDVDLMIIA-RG-----TPGFSGADLANLVNIAALKA 411 (685)
Q Consensus 369 ILk~~l~~---~~~~-~~vdl~~la-~~-----t~G~sgadI~~lv~~A~~~A 411 (685)
|+-....- .... .-+.+-.++ .. ...|.-+.|..+++.|....
T Consensus 788 i~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 788 MILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 75332110 0000 001111111 11 12367788888888765443
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.52 E-value=6.6e-07 Score=117.56 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=92.0
Q ss_pred CeEEEEcCCCCChHHHHHHH-HHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHH----H------------hCCCeEE
Q 005661 228 KGVLLVGPPGTGKTMLARAI-AGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAA----K------------KRSPCII 290 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAral-A~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A----~------------~~~P~IL 290 (685)
++|||+||||||||++++.. ++..+.+++.++++.-.+. ..+...++.- + ....+|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 47999999999999877654 4444677888888764432 2233333321 0 1223699
Q ss_pred EEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc--------ccCCCEEEEEecCCcC-----cCcccccCCCCcccccc
Q 005661 291 FIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF--------KQNEGIIVIAATNFPE-----SLDKALVRPGRFDRHIV 357 (685)
Q Consensus 291 fIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~--------~~~~~ViVIaaTN~p~-----~LD~aLlRpgRFd~~I~ 357 (685)
||||++.- .....+.+.....+.+++..- ++ ..-.++.+|+|+|.|. .|+++++| ||. .+.
T Consensus 1379 FiDDiNmp--~~D~yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-vi~ 1452 (3245)
T 3vkg_A 1379 FCDEINLP--STDKYGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-ILL 1452 (3245)
T ss_dssp EETTTTCC--CCCTTSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-EEE
T ss_pred EecccCCC--CccccccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-EEE
Confidence 99999843 222222233455666666432 22 1224688999999883 58999998 886 689
Q ss_pred cCCCCHHHHHHHHHHHhhhh
Q 005661 358 VPNPDVEGRRQIMESHMSKV 377 (685)
Q Consensus 358 i~~Pd~~eR~~ILk~~l~~~ 377 (685)
++.|+.+....|+..++...
T Consensus 1453 i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988776543
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.40 E-value=7.7e-07 Score=112.94 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=79.8
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh----hHhh------------hhhHHHHHHHHHHH
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE----MFVG------------VGARRVRDLFSAAK 283 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~----~~~g------------~~~~~ir~lF~~A~ 283 (685)
|...+++++|+||||||||+||.+++.++ |....+++...... ...| ..+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36677889999999999999999998765 45566666553321 1112 23456677777888
Q ss_pred hCCCeEEEEcCchhhcCCCC----CCc-hH-HHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 284 KRSPCIIFIDEIDAIGGSRN----PKD-QQ-YMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 284 ~~~P~ILfIDEID~l~~~r~----~~~-~~-~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
..+|++|||||++.+.+.+. ..+ .. ...+.+.++|.+|.++....+++||.+-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 89999999999998875320 111 11 1356778888888888887787776553
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.30 E-value=3.6e-07 Score=90.80 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEE
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFF 256 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi 256 (685)
+++||+||||||||++|.++|+.++..++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999865443
No 108
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.18 E-value=3.4e-06 Score=93.53 Aligned_cols=128 Identities=17% Similarity=0.189 Sum_probs=96.5
Q ss_pred CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEe---------cC---CcCcCcccccCCCCccc
Q 005661 287 PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAA---------TN---FPESLDKALVRPGRFDR 354 (685)
Q Consensus 287 P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa---------TN---~p~~LD~aLlRpgRFd~ 354 (685)
|.|+||||+|.+. ....+.|+..|+... .+++|+++ |+ .++.|++.+++ ||..
T Consensus 296 ~~VliIDEa~~l~-----------~~a~~aLlk~lEe~~--~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~ 360 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-----------IECFTYLHRALESSI--APIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI 360 (456)
T ss_dssp ECEEEEESGGGCB-----------HHHHHHHHHHTTSTT--CCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE
T ss_pred ceEEEEechhhcC-----------HHHHHHHHHHhhccC--CCEEEEecCCccccccccccccccccCChhHHh--hcce
Confidence 4699999999883 456788888888543 34544454 32 26678889998 9975
Q ss_pred ccccCCCCHHHHHHHHHHHhhhhccc-CcccHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 355 HIVVPNPDVEGRRQIMESHMSKVLKA-DDVDLMIIARGT-PGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 355 ~I~i~~Pd~~eR~~ILk~~l~~~~~~-~~vdl~~la~~t-~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
+.+++|+.++..+||+..+...... .+-.+..++... .| +++...++++.|...|..+++..|+.+|+.+|+.-+
T Consensus 361 -~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 361 -IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp -EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred -eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 6999999999999999988643322 111244566665 44 888999999999999999999999999999998654
No 109
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.13 E-value=1.5e-05 Score=84.65 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=109.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CC-CEEEeeccchhhhHhhhhhHHHHHHHHHHH----hCCCeEEEEcCch
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GV-PFFSCSGSEFEEMFVGVGARRVRDLFSAAK----KRSPCIIFIDEID 296 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~-~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~----~~~P~ILfIDEID 296 (685)
+.+...||+||+|+||++.++.+++.+ +. ++..+.... ...++++++.+. .....|++|||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 355689999999999999999998865 22 222221110 122344444443 2346799999999
Q ss_pred h-hcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc------CcCcccccCCCCcccccccCCCCHHHHHHH
Q 005661 297 A-IGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP------ESLDKALVRPGRFDRHIVVPNPDVEGRRQI 369 (685)
Q Consensus 297 ~-l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p------~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~I 369 (685)
. +.. ...+.|+..++. +++++++|.+|+.+ ..+-+++.+ |. .++.+.+|+..+....
T Consensus 87 ~kl~~-----------~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 87 NGPNA-----------AINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp SCCCT-----------THHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred CCCCh-----------HHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 7 631 134556666663 33455555555543 245567766 55 3788899999999999
Q ss_pred HHHHhhhhcccCc-ccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 005661 370 MESHMSKVLKADD-VDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVTMADLEYAKDKI 431 (685)
Q Consensus 370 Lk~~l~~~~~~~~-vdl~~la~~t~G~sgadI~~lv~~A~~~A~~~~~~~It~edl~~A~~~v 431 (685)
++..+++....-+ -.+..++..+.| +.+++.+.++..... .+...||.+|+...+...
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~---~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLL---WPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH---CTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHh---cCCCCCCHHHHHHHHhhh
Confidence 9888876543211 224456766654 444555555444333 344589999998876543
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.08 E-value=1.2e-05 Score=106.08 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=89.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccchhhhHhhhhhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCch
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQ 307 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l~~~~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 307 (685)
.|..+.||+|||||.+++.+|+.+|++++.++|++-.+. ..+..+|.-+... .+..++|||+.+-
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~-------- 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLE-------- 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSC--------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCC--------
Confidence 467899999999999999999999999999999875432 2344555554332 4689999999772
Q ss_pred HHHHHHHHHHHHHh-------------h-c--cccCCCEEEEEecCC----cCcCcccccCCCCcccccccCCCCHHHHH
Q 005661 308 QYMKMTLNQLLVEL-------------D-G--FKQNEGIIVIAATNF----PESLDKALVRPGRFDRHIVVPNPDVEGRR 367 (685)
Q Consensus 308 ~~~~~~l~~LL~~l-------------d-~--~~~~~~ViVIaaTN~----p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~ 367 (685)
.....++.+.+..+ + | +.-+.++.|++|.|. ...|+++|.. || +.|.++.||.+...
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIA 746 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHH
Confidence 22223333322211 1 1 223456788999984 3478899987 77 57999999999988
Q ss_pred HHHH
Q 005661 368 QIME 371 (685)
Q Consensus 368 ~ILk 371 (685)
+|+-
T Consensus 747 ei~L 750 (3245)
T 3vkg_A 747 QVML 750 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 111
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.06 E-value=1.2e-05 Score=78.05 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=24.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFF 256 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi 256 (685)
.+.|.||+|+|||||++.|++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998875543
No 112
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.99 E-value=7.4e-06 Score=84.59 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGV 253 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~ 253 (685)
++++|+||||||||++|++||+..+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 47999999999999999999997643
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.91 E-value=2.9e-05 Score=77.39 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=61.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHh--c-------CCCEEEeeccch--hh----h--Hhhh---------------h
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGE--A-------GVPFFSCSGSEF--EE----M--FVGV---------------G 271 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e--~-------~~~fi~vs~s~l--~~----~--~~g~---------------~ 271 (685)
.....-++|+||||+|||+|++.++.. . +...++++.... .. . ..+. .
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 333445899999999999999999984 2 456777776541 11 0 0010 0
Q ss_pred h----HHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 272 A----RRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 272 ~----~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
. ..+..+........|.+|+|||+..+.....+. .....++.+..++..+..+....++.||.++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 0 112223344455789999999999886432111 1011122234444444333333456666666543
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.89 E-value=3.7e-05 Score=75.69 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
.....++|+||||+|||+|++.++... +.++++++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 334458999999999999999998654 4566655543
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.84 E-value=3.8e-05 Score=75.26 Aligned_cols=39 Identities=21% Similarity=0.046 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccc
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 262 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~ 262 (685)
.....-++|+||||+|||+|++.++...+.+.++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 333445899999999999999999986677788887654
No 116
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.78 E-value=8.8e-05 Score=80.09 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH----hhh-----------hhHHHHHHHH-HHHh
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGV-----------GARRVRDLFS-AAKK 284 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~----~g~-----------~~~~ir~lF~-~A~~ 284 (685)
......++|+||||+|||+||..++..+ +.++++++...-.... .|. ....+..... ..+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 3444569999999999999999988764 6677777765422211 111 1112222222 2334
Q ss_pred CCCeEEEEcCchhhcCCCC-CC--chH---HHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 285 RSPCIIFIDEIDAIGGSRN-PK--DQQ---YMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 285 ~~P~ILfIDEID~l~~~r~-~~--~~~---~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
..+++|+||.+..+..... .. ... ...+.+.+++..|..+....++.||++.
T Consensus 151 ~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 6789999999999974221 11 000 1224456666666655555667776653
No 117
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.75 E-value=0.00036 Score=79.21 Aligned_cols=175 Identities=13% Similarity=0.064 Sum_probs=94.4
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc-------CCCEEEeeccch--
Q 005661 193 FSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA-------GVPFFSCSGSEF-- 263 (685)
Q Consensus 193 f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~-------~~~fi~vs~s~l-- 263 (685)
...++|.+...+.|.+.+... ...++-++|+||+|+|||+||+.++... ....+.++.+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 357899999888777665421 1123468999999999999999997532 112344433322
Q ss_pred ---hhhHh------h----------hhhHHHHHHH-HHHHh-CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhh
Q 005661 264 ---EEMFV------G----------VGARRVRDLF-SAAKK-RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELD 322 (685)
Q Consensus 264 ---~~~~~------g----------~~~~~ir~lF-~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld 322 (685)
...+. + .....+...+ ..... ..|.+|+||+++.. . .+ +
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~---------~--------~l---~ 252 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS---------W--------VL---K 252 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH---------H--------HH---H
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH---------H--------HH---H
Confidence 11110 0 0001112222 22222 36899999999742 0 11 2
Q ss_pred ccccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCCCHHHHHH
Q 005661 323 GFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGFSGADLAN 402 (685)
Q Consensus 323 ~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~sgadI~~ 402 (685)
.+ ..+..||.||........ .. +.......+...+.++-.++|..++........-....|++.+.|+ +--|..
T Consensus 253 ~l--~~~~~ilvTsR~~~~~~~--~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~ 326 (591)
T 1z6t_A 253 AF--DSQCQILLTTRDKSVTDS--VM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-PLVVSL 326 (591)
T ss_dssp TT--CSSCEEEEEESCGGGGTT--CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-HHHHHH
T ss_pred Hh--cCCCeEEEECCCcHHHHh--cC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-cHHHHH
Confidence 22 345677778775442211 11 1111111224678888889998877542211123356788888774 444443
Q ss_pred H
Q 005661 403 L 403 (685)
Q Consensus 403 l 403 (685)
+
T Consensus 327 ~ 327 (591)
T 1z6t_A 327 I 327 (591)
T ss_dssp H
T ss_pred H
Confidence 3
No 118
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.73 E-value=5e-05 Score=80.36 Aligned_cols=113 Identities=20% Similarity=0.180 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccch--hhh---H---hhh----------------
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF--EEM---F---VGV---------------- 270 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~l--~~~---~---~g~---------------- 270 (685)
.....-++|+||||+|||+|+..++..+ +.+.++++...- .+. + .|.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3344458999999999999999998765 456777776642 110 0 010
Q ss_pred hh---HHHHHHHHHHHh-CCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 271 GA---RRVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 271 ~~---~~ir~lF~~A~~-~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
.. ..+..+....+. ..+.+|+||++..+...... .........+.+++..|..+....++.||.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 00 112233344455 67899999999998632111 11112233456666666555444566666653
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.71 E-value=0.00013 Score=78.42 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=64.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh----Hhh------------hhhHHHHHHHHHHHhCCCe
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM----FVG------------VGARRVRDLFSAAKKRSPC 288 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~----~~g------------~~~~~ir~lF~~A~~~~P~ 288 (685)
.-++|+||||+|||+|+..++..+ +.++++++....... -.| .....+..+....+...|.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 348899999999999999998764 567777776542211 011 0111222222223457789
Q ss_pred EEEEcCchhhcCC-C---CCCch--HHHHHHHHHHHHHhhccccCCCEEEEEe
Q 005661 289 IIFIDEIDAIGGS-R---NPKDQ--QYMKMTLNQLLVELDGFKQNEGIIVIAA 335 (685)
Q Consensus 289 ILfIDEID~l~~~-r---~~~~~--~~~~~~l~~LL~~ld~~~~~~~ViVIaa 335 (685)
+++||.+..+.+. . ..... ....+.+.+++..|..+....++.||.+
T Consensus 142 lvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 142 LIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp EEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred eEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9999999988641 1 01111 1234556666666666655666666665
No 120
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.69 E-value=0.00013 Score=72.89 Aligned_cols=113 Identities=25% Similarity=0.257 Sum_probs=62.8
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHH--Hh--cCCCEEEeeccchhhhH------hhh-----------------------
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIA--GE--AGVPFFSCSGSEFEEMF------VGV----------------------- 270 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA--~e--~~~~fi~vs~s~l~~~~------~g~----------------------- 270 (685)
.....-+.|.||+|+|||||++.++ .. .+...+.++........ .+.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 3344469999999999999999998 33 24444444433211100 000
Q ss_pred -------------hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 271 -------------GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 271 -------------~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
.......+........|.+|+|||...+.... .+.......+..++..+. . .++.||.+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~--~d~~~~~~~l~~l~~~l~---~-~g~tii~vtH 180 (251)
T 2ehv_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--EEERKIREVLLKLNTILL---E-MGVTTILTTE 180 (251)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS--SSGGGHHHHHHHHHHHHH---H-HCCEEEEEEC
T ss_pred ccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc--CCHHHHHHHHHHHHHHHH---H-CCCeEEEEEC
Confidence 01112233334455789999999998775311 122334444566665553 2 3567777887
Q ss_pred CcCcC
Q 005661 338 FPESL 342 (685)
Q Consensus 338 ~p~~L 342 (685)
..+..
T Consensus 181 ~~~~~ 185 (251)
T 2ehv_A 181 APDPQ 185 (251)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 66554
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.69 E-value=7.7e-05 Score=94.97 Aligned_cols=118 Identities=16% Similarity=0.212 Sum_probs=79.9
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH----hhh--------hhHHHHHHHHHHHh---
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGV--------GARRVRDLFSAAKK--- 284 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~----~g~--------~~~~ir~lF~~A~~--- 284 (685)
|..+...++|+|+||+|||+||..+|..+ +.+++++++.+..... .|. ....+..++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 35566679999999999999999998876 4579999887654443 121 11224455555443
Q ss_pred -CCCeEEEEcCchhhcC-C----C-CCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 285 -RSPCIIFIDEIDAIGG-S----R-NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 285 -~~P~ILfIDEID~l~~-~----r-~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
..|++||||.++.+.. . + .+..+....+.+++++..|..+....++.||++..-..
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r 870 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 870 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccc
Confidence 6899999999999975 1 1 11111222445788888888887778888887765433
No 122
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.69 E-value=5e-05 Score=81.44 Aligned_cols=76 Identities=21% Similarity=0.183 Sum_probs=48.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh----Hhhh------------hhHHHHHHHHHHHhC
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM----FVGV------------GARRVRDLFSAAKKR 285 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~----~~g~------------~~~~ir~lF~~A~~~ 285 (685)
....-++|+||||+|||+|+..++..+ +.+.++++...-... ..|. ....+..+...++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 333459999999999999999998654 566777765432211 1111 111122222233456
Q ss_pred CCeEEEEcCchhhcC
Q 005661 286 SPCIIFIDEIDAIGG 300 (685)
Q Consensus 286 ~P~ILfIDEID~l~~ 300 (685)
.|.+|+||++..+..
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 799999999999863
No 123
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=8.4e-05 Score=79.37 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=63.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccch-h-hh---H---hhh----------------hh---
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF-E-EM---F---VGV----------------GA--- 272 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~l-~-~~---~---~g~----------------~~--- 272 (685)
-++|+||||+|||+|+..++... +.+.++++.... . +. + .|. ..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~ 203 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQM 203 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHH
Confidence 48899999999999999998863 456777776542 1 10 0 000 01
Q ss_pred HHHHHHHHHHHh--CCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEEecC
Q 005661 273 RRVRDLFSAAKK--RSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATN 337 (685)
Q Consensus 273 ~~ir~lF~~A~~--~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 337 (685)
..+..+....+. ..+.+|+||.+..+...... .........+.+++..|..+....++.||.+..
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 112223344455 67899999999998642111 111122234556666555555555666666544
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.62 E-value=0.00011 Score=69.75 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 263 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l 263 (685)
|+-|+|+|+||+||||+++.|+..++.+|+.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4579999999999999999999999999988766544
No 125
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.60 E-value=9.7e-05 Score=72.80 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..-+.|.||+|+|||||++.++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3348899999999999999999854
No 126
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.60 E-value=0.00013 Score=80.83 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=37.1
Q ss_pred CCCCCCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 185 PSLESNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 185 ~~~~~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
+....+.+|+++ .+++++.+..+..++...+ ..++|.||||||||+++.+++..+
T Consensus 15 ~~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 15 VPRGSHMTFDDL--TEGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ------CCSSCC--CHHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccCCCccccC--CHHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334566788886 4566666666666654422 279999999999999999998766
No 127
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.58 E-value=0.00021 Score=77.95 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=65.2
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---------CCCEEEeeccch-hhh-------Hhhh----------------
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---------GVPFFSCSGSEF-EEM-------FVGV---------------- 270 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---------~~~fi~vs~s~l-~~~-------~~g~---------------- 270 (685)
+....-++|+||||+|||+|++.++-.. +...++++..+. ... ..|.
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 3334458999999999999999776332 234677766542 110 0010
Q ss_pred ---hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 271 ---GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 271 ---~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
....+..+........|.+|+||++..+...... ......++.+.+++..|..+....++.||+++..
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222333344568999999999988653322 1122334445666666665555556777777664
No 128
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.57 E-value=0.00011 Score=79.15 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH----hhh-----------hhHHHHHHHHH-HHh
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGV-----------GARRVRDLFSA-AKK 284 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~----~g~-----------~~~~ir~lF~~-A~~ 284 (685)
......++|+||||+|||+||..++..+ +.++++++...-.+.. .|. ....+..++.. .+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4444569999999999999999998764 6678888764321110 110 11222333332 245
Q ss_pred CCCeEEEEcCchhhcCCCC----CCchH--HHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 285 RSPCIIFIDEIDAIGGSRN----PKDQQ--YMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 285 ~~P~ILfIDEID~l~~~r~----~~~~~--~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
..+.+|+||.+..+..... ..+.. ...+.+.+++..|..+....++.||.+.
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 6789999999999864210 00100 1112345555555444444556666543
No 129
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.54 E-value=0.0011 Score=80.86 Aligned_cols=168 Identities=13% Similarity=0.107 Sum_probs=96.8
Q ss_pred CCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---C----CCEEEeeccchh
Q 005661 192 KFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---G----VPFFSCSGSEFE 264 (685)
Q Consensus 192 ~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~----~~fi~vs~s~l~ 264 (685)
...+++|.++..++|.+.+..- ...++-+.|+|+.|+|||+||+.+++.. . ..++.++.+...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 3467899999988887765321 1224468899999999999999988752 1 223344433311
Q ss_pred h-----hH------hh----------hhhHHHHHHHHHHHh--CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHh
Q 005661 265 E-----MF------VG----------VGARRVRDLFSAAKK--RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVEL 321 (685)
Q Consensus 265 ~-----~~------~g----------~~~~~ir~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~l 321 (685)
. .+ .+ .....+...+..... ..+.+|+||+++... .+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VL 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HH
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HH
Confidence 0 00 00 011122222322222 338899999998431 12
Q ss_pred hccccCCCEEEEEecCCcCcCcccccCCCCcccccccCC-CCHHHHHHHHHHHhhhhcccCcccHHHHHhcCCCC
Q 005661 322 DGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPN-PDVEGRRQIMESHMSKVLKADDVDLMIIARGTPGF 395 (685)
Q Consensus 322 d~~~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~-Pd~~eR~~ILk~~l~~~~~~~~vdl~~la~~t~G~ 395 (685)
+.+ ..+..||.||..+...... . .....+.++. .+.++-.++|..+..............|++.+.|+
T Consensus 252 ~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 252 KAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp TTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred Hhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 223 3455788888765443211 1 2234567765 78888888988777433222222356788888775
No 130
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.53 E-value=0.00016 Score=77.48 Aligned_cols=114 Identities=18% Similarity=0.108 Sum_probs=62.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC---------CCEEEeeccchh--hh--Hh----h-------------------h
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG---------VPFFSCSGSEFE--EM--FV----G-------------------V 270 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~---------~~fi~vs~s~l~--~~--~~----g-------------------~ 270 (685)
..-+.|+||||+|||+|++.++.... ...++++..+.. .. ++ + .
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHH
Confidence 33488999999999999999998762 355677654321 10 00 0 0
Q ss_pred hhHHHHHHHHHHHh-----CCCeEEEEcCchhhcCCCCCC--chHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC
Q 005661 271 GARRVRDLFSAAKK-----RSPCIIFIDEIDAIGGSRNPK--DQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE 340 (685)
Q Consensus 271 ~~~~ir~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~--~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~ 340 (685)
....+..+-..... ..|.+|+|||+-++....... ........+.+++..|..+....++.||.+++...
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 00111112222333 579999999998876321111 11112223455555555444445666777666443
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00062 Score=67.67 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=28.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
.....-++|+||||+|||+|+..++... +.+.++++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3344458999999999999998886543 5566666654
No 132
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.41 E-value=0.00019 Score=75.59 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---------------C----CCEEEeeccch--hhh---H---hhh---------
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---------------G----VPFFSCSGSEF--EEM---F---VGV--------- 270 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---------------~----~~fi~vs~s~l--~~~---~---~g~--------- 270 (685)
..-++|+||||+|||+|+..++... | .++++++...- .+. + .|.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNT 177 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCE
Confidence 3458999999999999999998652 2 56777776542 110 0 010
Q ss_pred ------hhH----HHHHHHHHHHh-CCCeEEEEcCchhhcCCCCC--CchHHHHHHHHHHHHHhhccccCCCEEEEEec
Q 005661 271 ------GAR----RVRDLFSAAKK-RSPCIIFIDEIDAIGGSRNP--KDQQYMKMTLNQLLVELDGFKQNEGIIVIAAT 336 (685)
Q Consensus 271 ------~~~----~ir~lF~~A~~-~~P~ILfIDEID~l~~~r~~--~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 336 (685)
... .+..+....+. ..+.+|+||.+..+...... .........+.+++..|..+....++.||.+.
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~n 256 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 256 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 001 12223334445 67899999999998632111 11122233456666666665555566666653
No 133
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.41 E-value=0.00028 Score=88.90 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=53.6
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH----hhh--------hhHHHHHHHHHHH----
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGV--------GARRVRDLFSAAK---- 283 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~----~g~--------~~~~ir~lF~~A~---- 283 (685)
|......++|+||||+|||+||..+|..+ +.++++++..+..... .|. ....+.+++..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35566679999999999999999998765 5578888776543221 121 0112334444443
Q ss_pred hCCCeEEEEcCchhhcC
Q 005661 284 KRSPCIIFIDEIDAIGG 300 (685)
Q Consensus 284 ~~~P~ILfIDEID~l~~ 300 (685)
...|++|+||+++.+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999863
No 134
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.35 E-value=0.00011 Score=70.30 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
++.|+|+||||+||||+++.||..++.+|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 557999999999999999999999999988653
No 135
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.35 E-value=0.00064 Score=71.81 Aligned_cols=110 Identities=15% Similarity=0.279 Sum_probs=62.6
Q ss_pred CCCe-EEEEcCCCCChHHHHHHHHHhc-----CCCEEEeeccchhh-hH---hhh-----------hhHHH-HHHHHH--
Q 005661 226 LPKG-VLLVGPPGTGKTMLARAIAGEA-----GVPFFSCSGSEFEE-MF---VGV-----------GARRV-RDLFSA-- 281 (685)
Q Consensus 226 ~pkg-vLL~GPPGTGKT~LAralA~e~-----~~~fi~vs~s~l~~-~~---~g~-----------~~~~i-r~lF~~-- 281 (685)
.|+| ++|+||||+|||+|+-.++..+ +..+++++...-.. .+ .|. ....+ -.+.+.
T Consensus 26 l~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 26 MQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD 105 (333)
T ss_dssp BCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH
T ss_pred CcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH
Confidence 3444 6899999999999988776543 56778887654211 11 111 11111 122222
Q ss_pred -HHhCCCeEEEEcCchhhcCCCC-CCc--h---H--HHHHHHHHHHHHhhccccCCCEEEEEe
Q 005661 282 -AKKRSPCIIFIDEIDAIGGSRN-PKD--Q---Q--YMKMTLNQLLVELDGFKQNEGIIVIAA 335 (685)
Q Consensus 282 -A~~~~P~ILfIDEID~l~~~r~-~~~--~---~--~~~~~l~~LL~~ld~~~~~~~ViVIaa 335 (685)
.+...|.+|+||-|.++..+.. ... . . ...+.+.+.|..|.++....++.+|.+
T Consensus 106 ~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 2456899999999999975321 111 0 0 233456666666655555566666654
No 136
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.30 E-value=0.00068 Score=70.51 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch
Q 005661 200 DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 263 (685)
Q Consensus 200 de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l 263 (685)
++....+.+++..+... ......|.-++|.||||+||||+++.++.+++..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 55555666666553221 1233456679999999999999999999988555677776544
No 137
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.27 E-value=0.00064 Score=69.04 Aligned_cols=60 Identities=30% Similarity=0.361 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch
Q 005661 200 DEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 263 (685)
Q Consensus 200 de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l 263 (685)
.+....+.+++..+.... .....|..++|.||||+||||+++.|+..++.+++.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 444444555554433221 134556779999999999999999999999877777777665
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.00017 Score=70.26 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
..+.++|.||||+||||+++.|++.++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457999999999999999999999999987553
No 139
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.22 E-value=0.00019 Score=68.82 Aligned_cols=34 Identities=35% Similarity=0.602 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
..|.-|+|.|+||+||||+++.|+..++.+++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 4466799999999999999999999999887653
No 140
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.21 E-value=0.0023 Score=70.61 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchH-HHHHHHHHHHHHhhcc--------ccCCCEEEEEec----CCcC
Q 005661 274 RVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQ-YMKMTLNQLLVELDGF--------KQNEGIIVIAAT----NFPE 340 (685)
Q Consensus 274 ~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~~~l~~LL~~ld~~--------~~~~~ViVIaaT----N~p~ 340 (685)
..++....+..+ +|||+||||.++.+......+ ....+...||..|++- ...++|++|++. +.|.
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS 317 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh
Confidence 344555555333 499999999998654322222 2334667788888873 235678999887 2333
Q ss_pred cCcccccCCCCcccccccCCCCHHHHHHHHH
Q 005661 341 SLDKALVRPGRFDRHIVVPNPDVEGRRQIME 371 (685)
Q Consensus 341 ~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk 371 (685)
.+-|.|+. ||+.+|.++.++.++..+|+.
T Consensus 318 dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 318 DLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 34577775 999999999999999999993
No 141
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.18 E-value=0.001 Score=73.56 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeecc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 261 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s 261 (685)
|.....-++|.|+||+|||+|+..++..+ |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34444458999999999999999988754 5677777654
No 142
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.00059 Score=67.87 Aligned_cols=38 Identities=32% Similarity=0.235 Sum_probs=28.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHh----cCCCEEEeecc
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGE----AGVPFFSCSGS 261 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e----~~~~fi~vs~s 261 (685)
.....-++|+|+||+|||++|..+|.. .+.++++++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 333445899999999999999877543 36677777654
No 143
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.16 E-value=0.0021 Score=65.97 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..-++|+||||+|||+|++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998643
No 144
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.14 E-value=0.00063 Score=70.41 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=28.3
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeec
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSG 260 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~ 260 (685)
+.....-++|.||||+|||+|++.++... |.++++++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44444568999999999999999998765 445655543
No 145
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.10 E-value=0.00044 Score=65.99 Aligned_cols=19 Identities=37% Similarity=0.718 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCChHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARA 246 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAra 246 (685)
.-+.|.||+|+|||||++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3488999999999999995
No 146
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.10 E-value=0.00062 Score=68.40 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=43.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc-------hhhhHhhh-----hhHHHHHHHHHHHh----CCCeE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE-------FEEMFVGV-----GARRVRDLFSAAKK----RSPCI 289 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~-------l~~~~~g~-----~~~~ir~lF~~A~~----~~P~I 289 (685)
-++++||||+||||++..++..+ +..++.+.... +.+. .|. ......++++.++. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 37789999999999998887765 55565553322 1110 111 01122456666654 35789
Q ss_pred EEEcCchhh
Q 005661 290 IFIDEIDAI 298 (685)
Q Consensus 290 LfIDEID~l 298 (685)
|+|||++.+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999875
No 147
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.09 E-value=0.00032 Score=65.73 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=27.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
-|+|.||||+||||+++.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998887654
No 148
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.06 E-value=0.00079 Score=69.12 Aligned_cols=67 Identities=22% Similarity=0.396 Sum_probs=41.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC----CCEEEeeccch-----------hhhHhhhhhHHHHHHHHHHHhCCCeEEEEc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGSEF-----------EEMFVGVGARRVRDLFSAAKKRSPCIIFID 293 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~----~~fi~vs~s~l-----------~~~~~g~~~~~ir~lF~~A~~~~P~ILfID 293 (685)
-++|.||+|+||||+++++++... ..++ +....+ ....+|.....++..+..+-...|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 488999999999999999998652 2222 111110 000011111234555666656689999999
Q ss_pred Cch
Q 005661 294 EID 296 (685)
Q Consensus 294 EID 296 (685)
|.-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 149
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.06 E-value=0.00011 Score=71.50 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=22.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~v 258 (685)
-++++||||+|||+++..++..+ +...+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999996666543 5554443
No 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.05 E-value=0.00034 Score=67.40 Aligned_cols=33 Identities=39% Similarity=0.657 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh-cCCCEEEee
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE-AGVPFFSCS 259 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e-~~~~fi~vs 259 (685)
+..|+|+|+||+||||+++.|+.. +|.+++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 446999999999999999999999 787776543
No 151
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.04 E-value=0.00031 Score=66.97 Aligned_cols=33 Identities=36% Similarity=0.758 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.++.|+|+|+||+||||+++.++..++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345799999999999999999999999887754
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.04 E-value=0.00038 Score=66.73 Aligned_cols=39 Identities=33% Similarity=0.503 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 263 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l 263 (685)
..+.-+.|.||||+||||+++.|++..+.+.+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 344568999999999999999999988778777776554
No 153
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.04 E-value=0.00034 Score=66.83 Aligned_cols=31 Identities=35% Similarity=0.668 Sum_probs=27.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.|+|+|+||+||||+++.|+..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999987543
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.03 E-value=0.00031 Score=66.80 Aligned_cols=30 Identities=33% Similarity=0.649 Sum_probs=27.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.++|.||||+||||+++.||+.++.+|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887753
No 155
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.03 E-value=0.00043 Score=67.32 Aligned_cols=35 Identities=40% Similarity=0.599 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
...|..|+|+|+||+||||+++.|+..++.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34455799999999999999999999999887655
No 156
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.01 E-value=0.00038 Score=65.56 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=28.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
..++|.|+|||||||+++.|+..+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3799999999999999999999999998764
No 157
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.01 E-value=0.0021 Score=70.89 Aligned_cols=39 Identities=28% Similarity=0.155 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeecc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 261 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s 261 (685)
|.....-++|.|+||+|||+|+..+|... |.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34444458999999999999999887643 5678777654
No 158
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.01 E-value=0.0071 Score=68.31 Aligned_cols=145 Identities=10% Similarity=0.070 Sum_probs=82.8
Q ss_pred CCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHH----hcCCCE---EEeeccch-----h
Q 005661 197 KGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAG----EAGVPF---FSCSGSEF-----E 264 (685)
Q Consensus 197 ~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~----e~~~~f---i~vs~s~l-----~ 264 (685)
.|.++.+++|.+.+..- +...++.|.|+|++|+|||+||+.+++ .....| +.++.+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 39999888887766421 112245688999999999999999996 332222 22232221 1
Q ss_pred h---hH---hhhh-------------hHHHHHHHHHHHhC-CCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhcc
Q 005661 265 E---MF---VGVG-------------ARRVRDLFSAAKKR-SPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGF 324 (685)
Q Consensus 265 ~---~~---~g~~-------------~~~ir~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~ 324 (685)
. .. .+.. ...+...+...-.. .+++|+||+++... .. .+ ..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~-~~---- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RW-AQ---- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HH-HH----
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--cc-cc----
Confidence 1 00 0100 01122333333334 38999999998531 11 11 11
Q ss_pred ccCCCEEEEEecCCcCcCcccccCCCCcccccccCCCCHHHHHHHHHHHhh
Q 005661 325 KQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIMESHMS 375 (685)
Q Consensus 325 ~~~~~ViVIaaTN~p~~LD~aLlRpgRFd~~I~i~~Pd~~eR~~ILk~~l~ 375 (685)
..+..||.||........ . +..+..+.++..+.++-.++|..+..
T Consensus 263 --~~gs~ilvTTR~~~v~~~--~--~~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 263 --ELRLRCLVTTRDVEISNA--A--SQTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp --HTTCEEEEEESBGGGGGG--C--CSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred --cCCCEEEEEcCCHHHHHH--c--CCCCeEEECCCCCHHHHHHHHHHHhc
Confidence 145677888875432211 1 11334678888999999999988853
No 159
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.00 E-value=0.0053 Score=61.76 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=25.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeec
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSG 260 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~ 260 (685)
.+++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 59999999999999999988765 666555544
No 160
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.96 E-value=0.00052 Score=64.68 Aligned_cols=31 Identities=32% Similarity=0.767 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
+..+.|+||||+||||+++.|++.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3469999999999999999999999876654
No 161
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.94 E-value=0.00045 Score=65.87 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.|+-|+|.|+||+||||+++.|+..++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456799999999999999999999999776654
No 162
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.94 E-value=0.0014 Score=70.32 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=43.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc----CCCEEEee-ccchh---------hhHhhhhhHHHHHHHHHHHhCCCeEEEEcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA----GVPFFSCS-GSEFE---------EMFVGVGARRVRDLFSAAKKRSPCIIFIDE 294 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~----~~~fi~vs-~s~l~---------~~~~g~~~~~ir~lF~~A~~~~P~ILfIDE 294 (685)
.+++.||+|+||||+.+++++.. +..++.+. ..++. ...++.....+...+..+-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48899999999999999998865 23333221 11110 001111112344566677778999999999
Q ss_pred ch
Q 005661 295 ID 296 (685)
Q Consensus 295 ID 296 (685)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 163
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00041 Score=66.27 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|.-|+|.|+||+||||+++.|+..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45699999999999999999999999876543
No 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.92 E-value=0.0033 Score=70.55 Aligned_cols=75 Identities=17% Similarity=0.319 Sum_probs=48.7
Q ss_pred Ce-EEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC--cCcccccCCCCcccccccCCCCH
Q 005661 287 PC-IIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE--SLDKALVRPGRFDRHIVVPNPDV 363 (685)
Q Consensus 287 P~-ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~i~~Pd~ 363 (685)
|. +|+|||+..+... ....+..++..+-..-..-++.+|.+|.+|. .++..++. -|...|.+...+.
T Consensus 297 P~ivlvIDE~~~ll~~--------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~ 366 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT--------VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSK 366 (512)
T ss_dssp CEEEEEEETHHHHHHH--------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSH
T ss_pred CcEEEEEeCHHHHHhh--------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCH
Confidence 54 8999999877521 1112223333332223345889999999987 57766665 5666778888888
Q ss_pred HHHHHHHH
Q 005661 364 EGRRQIME 371 (685)
Q Consensus 364 ~eR~~ILk 371 (685)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88887764
No 165
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.91 E-value=0.00076 Score=71.44 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 262 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~ 262 (685)
|+.++|+||+|+|||++++.||+.++.+++.++.-.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 457999999999999999999999998888876543
No 166
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.0014 Score=66.85 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh---cCCCEEEeeccchh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE---AGVPFFSCSGSEFE 264 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e---~~~~fi~vs~s~l~ 264 (685)
+.-|+|+|+||+||||+++.|+.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 346899999999999999999997 78888866665543
No 167
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.88 E-value=0.00047 Score=64.29 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=26.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
-|+|.||||+||||+++.| ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887765
No 168
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.87 E-value=0.00069 Score=65.86 Aligned_cols=32 Identities=34% Similarity=0.718 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
++-|+|.|+||+||||+++.|++.+|.+++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 55799999999999999999999998877654
No 169
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.86 E-value=0.00058 Score=65.55 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
+.-|+|.|+||+||||+++.|+..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 457999999999999999999999998876543
No 170
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.86 E-value=0.00092 Score=76.30 Aligned_cols=97 Identities=24% Similarity=0.385 Sum_probs=54.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhhH----hhhhhHHHHHHHHHH---------HhCCCeEEE
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEMF----VGVGARRVRDLFSAA---------KKRSPCIIF 291 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~~----~g~~~~~ir~lF~~A---------~~~~P~ILf 291 (685)
..++|.||||||||+++++++..+ +.+++.+..+.-.... .+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 368999999999999999998754 5666655433211111 111112222222110 011347999
Q ss_pred EcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 292 IDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 292 IDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
|||+..+. ...+..|+..+ .....+++++-.+.
T Consensus 285 IDEasml~-----------~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG-----------DALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC-----------HHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCCC-----------HHHHHHHHHhC---cCCCEEEEEecccc
Confidence 99998762 22344454332 34455777776554
No 171
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.85 E-value=0.00061 Score=67.29 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.+..|+|.|+||+||||+++.|+..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 355799999999999999999999999877654
No 172
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.84 E-value=0.0037 Score=70.89 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=51.6
Q ss_pred eEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcC--cCcccccCCCCcccccccCCCCHHH
Q 005661 288 CIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPE--SLDKALVRPGRFDRHIVVPNPDVEG 365 (685)
Q Consensus 288 ~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~--~LD~aLlRpgRFd~~I~i~~Pd~~e 365 (685)
-+|+|||+..+.... .......+..+... -..-+|.+|.+|.+|. .|+..++. -|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~----~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIV----GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHT----CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhh----hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 689999999885321 12233444444432 3456899999999997 78777765 577778888888888
Q ss_pred HHHHHH
Q 005661 366 RRQIME 371 (685)
Q Consensus 366 R~~ILk 371 (685)
...||.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 777764
No 173
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.84 E-value=0.00053 Score=64.73 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHH-hcCCCEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAG-EAGVPFF 256 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~-e~~~~fi 256 (685)
|.-|+|.|+||+||||+++.|+. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 45689999999999999999998 5654444
No 174
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.82 E-value=0.00068 Score=69.04 Aligned_cols=32 Identities=38% Similarity=0.475 Sum_probs=29.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeec
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 260 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~ 260 (685)
-++|.||||+||||+|+.||+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887764
No 175
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.82 E-value=0.00062 Score=64.70 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFF 256 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi 256 (685)
|.-|+|.|+||+||||+++.|++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999999887
No 176
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.82 E-value=0.0046 Score=64.99 Aligned_cols=39 Identities=28% Similarity=0.135 Sum_probs=29.4
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
|.....-++|.|+||+|||+|+..+|... +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44444459999999999999999998654 4577777653
No 177
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.81 E-value=0.00059 Score=64.21 Aligned_cols=31 Identities=29% Similarity=0.562 Sum_probs=27.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
+.|+|+|+||+||||+++.|+..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999887654
No 178
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.79 E-value=0.00066 Score=65.31 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|.-|+|.|+||+||||+++.|+..++.+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45699999999999999999999999766544
No 179
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.77 E-value=0.00085 Score=63.91 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 262 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~ 262 (685)
.+.-+.|+|++|+||||+++.++..+ |.+++.+++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34568899999999999999999987 99998887543
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.77 E-value=0.016 Score=60.85 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=46.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-------Hh---h----------hhhHHHHHHHH
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------FV---G----------VGARRVRDLFS 280 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-------~~---g----------~~~~~ir~lF~ 280 (685)
...|+-++|.||+|+||||++..+|..+ +..+..+++..+... |. + .........+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3456679999999999999999999865 455555554433211 10 0 11112233455
Q ss_pred HHHhCCCeEEEEcCch
Q 005661 281 AAKKRSPCIIFIDEID 296 (685)
Q Consensus 281 ~A~~~~P~ILfIDEID 296 (685)
.+....|.+|+||+..
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566788999999875
No 181
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.77 E-value=0.00052 Score=65.51 Aligned_cols=31 Identities=39% Similarity=0.669 Sum_probs=26.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
..++|.|+||+||||+++.|++.++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3589999999999999999999998776543
No 182
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.75 E-value=0.00066 Score=67.08 Aligned_cols=31 Identities=32% Similarity=0.609 Sum_probs=27.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
..|+|.|+||+||||+++.|+..++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877755
No 183
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.75 E-value=0.00074 Score=67.05 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.|.-|+|.|+||+||||+++.|+..++.+++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 355799999999999999999999999877654
No 184
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.75 E-value=0.00064 Score=64.83 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
.-|+|.||||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 185
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.74 E-value=0.00077 Score=66.17 Aligned_cols=30 Identities=33% Similarity=0.641 Sum_probs=27.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.|+|.||||+||||+++.|+..++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999887755
No 186
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.71 E-value=0.00085 Score=62.89 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=27.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.|+|+|+||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999888754
No 187
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.71 E-value=0.00083 Score=65.85 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=26.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887755
No 188
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.70 E-value=0.00082 Score=67.25 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
.+.|+-|+|.||||+||+|.|+.|++.+|.+.+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 3456678999999999999999999999876543
No 189
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.70 E-value=0.00095 Score=66.70 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
+..|+|.|+||+||||+++.|+..++.+++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999877654
No 190
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.69 E-value=0.00098 Score=64.66 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
++-|+|.|+||+||||+++.|++.++.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 456899999999999999999999988776553
No 191
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.68 E-value=0.00088 Score=67.69 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.|.-|+|.||||+||||+++.|++.++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 466799999999999999999999998776654
No 192
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.68 E-value=0.0081 Score=59.04 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=59.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc---------chhhhHh-----------------hhhhHHHHHHH
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS---------EFEEMFV-----------------GVGARRVRDLF 279 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s---------~l~~~~~-----------------g~~~~~ir~lF 279 (685)
.|++|+++|.|||++|-.+|-.+ |..+..+... .+...+. .......+..|
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48899999999999999997765 6666665321 1222220 01123445566
Q ss_pred HHHHh----CCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 280 SAAKK----RSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 280 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
..++. ....+|+|||+.....-+-- ...+++..+. ......-||.|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l--------~~~ev~~~l~--~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL--------PLEEVISALN--ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS--------CHHHHHHHHH--TSCTTCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC--------CHHHHHHHHH--hCcCCCEEEEECCCC
Confidence 66544 44689999999654211100 0123344444 345667888888865
No 193
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.67 E-value=0.006 Score=67.28 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-------H---h----------hhhhHHHHHHHHHH
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------F---V----------GVGARRVRDLFSAA 282 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-------~---~----------g~~~~~ir~lF~~A 282 (685)
.|.-++++|++|+||||++..||..+ |..+..+++..+... + . ......++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999998755 566666665533110 0 0 11233456677778
Q ss_pred HhCCCeEEEEcCchh
Q 005661 283 KKRSPCIIFIDEIDA 297 (685)
Q Consensus 283 ~~~~P~ILfIDEID~ 297 (685)
+...+.+++||....
T Consensus 179 ~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HhCCCCEEEEECCCc
Confidence 777788999998753
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.64 E-value=0.0013 Score=64.04 Aligned_cols=32 Identities=34% Similarity=0.642 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
.+.-+.|.||+|+||||+++.|++.+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 35569999999999999999999999765543
No 195
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.63 E-value=0.00075 Score=66.73 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
.|..|+|.||||+||||+++.|+..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34579999999999999999999999976554
No 196
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.61 E-value=0.0049 Score=61.95 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=28.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeecc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS 261 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s 261 (685)
.++++||+|+|||.++.+++...+.+.+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999998887777776654
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.59 E-value=0.0013 Score=62.28 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
..++|.||||+||||+++.|++.+|.+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 358999999999999999999998876654
No 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.48 E-value=0.0075 Score=72.77 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHh
Q 005661 197 KGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 197 ~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e 250 (685)
+|.++.+++|.+.+... ...+-+.|+||.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89998888887766421 11356899999999999999999853
No 199
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.46 E-value=0.0015 Score=64.31 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=27.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.|+|.|+||+||||+++.|+..++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 388999999999999999999999887665
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.45 E-value=0.0052 Score=61.28 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||+|+|||||.+.|++...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 488999999999999999998764
No 201
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.45 E-value=0.0015 Score=64.60 Aligned_cols=29 Identities=38% Similarity=0.715 Sum_probs=25.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
++|.||||+||+|.|+.|++.+|.+.+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 78999999999999999999998776543
No 202
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.42 E-value=0.0022 Score=61.13 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=27.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs 259 (685)
-|.|.|+||+||||+++.|++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88888765
No 203
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.38 E-value=0.0022 Score=63.15 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=27.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
..+.|.||+|+||||+++.|++.+|++++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4689999999999999999999999877643
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.37 E-value=0.0026 Score=61.45 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc-CCCEEEee
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCS 259 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~-~~~fi~vs 259 (685)
+.-|.|.|+||+||||+++.|++.+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4569999999999999999999998 57887665
No 205
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.34 E-value=0.0034 Score=67.74 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=46.0
Q ss_pred hhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhcC----CCEEEeecc-ch--hh--hH-----hhhhhHHHHHHHHHHH
Q 005661 218 RFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGS-EF--EE--MF-----VGVGARRVRDLFSAAK 283 (685)
Q Consensus 218 ~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~~----~~fi~vs~s-~l--~~--~~-----~g~~~~~ir~lF~~A~ 283 (685)
.+..+.......++|.||+|+||||+++++++... ..++.+... ++ .. .+ +|.....++..+..+-
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 34444444444589999999999999999998652 223222210 00 00 00 1111122345555665
Q ss_pred hCCCeEEEEcCch
Q 005661 284 KRSPCIIFIDEID 296 (685)
Q Consensus 284 ~~~P~ILfIDEID 296 (685)
...|.+|++||+-
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 6789999999984
No 206
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.33 E-value=0.0023 Score=62.22 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE 262 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~ 262 (685)
..+.-+.|.||+|+||||+++.|++.+ |...+.+++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 345568899999999999999999988 55444555433
No 207
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.31 E-value=0.0018 Score=62.78 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=26.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
-|.|+|++|+||||+++.|++ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 887776553
No 208
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.28 E-value=0.0027 Score=63.84 Aligned_cols=31 Identities=32% Similarity=0.630 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
|.-+.|.||||+||||+++.|++.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 6679999999999999999999999876553
No 209
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.26 E-value=0.0014 Score=70.24 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=27.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.++|+||||+|||+++++||+.++.+|+.+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 699999999999999999999999888653
No 210
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.26 E-value=0.0016 Score=62.08 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=25.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC---CCEEEeec
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSG 260 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~---~~fi~vs~ 260 (685)
-|+|.|+||+||||+++.|++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 488999999999999999999875 33555543
No 211
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.26 E-value=0.0023 Score=61.49 Aligned_cols=29 Identities=24% Similarity=0.540 Sum_probs=26.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
-|.|.|+||+||||+++.|++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987764
No 212
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.25 E-value=0.011 Score=65.26 Aligned_cols=39 Identities=28% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
|.....-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 33333459999999999999999887655 6677777654
No 213
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.23 E-value=0.0023 Score=63.52 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=26.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
-|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999998766544
No 214
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.22 E-value=0.0033 Score=60.24 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhc---CCCEEEee
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 259 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~---~~~fi~vs 259 (685)
|.|.|++|+||||+++.|++.+ |.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 99887654
No 215
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.21 E-value=0.0027 Score=61.15 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|..|.|.|++|+||||+++.|++. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 456899999999999999999998 8777654
No 216
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.20 E-value=0.021 Score=64.15 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCCChHHHHHH--HHHhc--CCCEEEeeccchhhhH------hhh-------------------------
Q 005661 226 LPKGVLLVGPPGTGKTMLARA--IAGEA--GVPFFSCSGSEFEEMF------VGV------------------------- 270 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAra--lA~e~--~~~fi~vs~s~l~~~~------~g~------------------------- 270 (685)
....++|.||+|+|||||++. +++.. +..-+++++.+..... .|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 344599999999999999999 44433 3345555544311100 000
Q ss_pred -----hhHHHHHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcC
Q 005661 271 -----GARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESL 342 (685)
Q Consensus 271 -----~~~~ir~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~L 342 (685)
................|.+|+|||.-.+... ...+......+..++..+. . .++.||.+|++.+.+
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~--~~lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ--YDASSVVRRELFRLVARLK---Q-IGATTVMTTERIEEY 188 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT--TCCHHHHHHHHHHHHHHHH---H-HTCEEEEEEECSSSS
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh--cCCHHHHHHHHHHHHHHHH---H-CCCEEEEEecCCCCc
Confidence 0112233334444567889999999876432 1223334445566666553 2 356777788877665
No 217
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.19 E-value=0.011 Score=66.12 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeecc
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 261 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s 261 (685)
.....-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 3333458999999999999999988654 5678777754
No 218
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.18 E-value=0.0031 Score=60.91 Aligned_cols=31 Identities=39% Similarity=0.694 Sum_probs=27.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.+.|.|++|+||||+++.|++.+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998887654
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0026 Score=61.83 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=25.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
.+.|.||+|+||||+++.+++ +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 578999999999999999998 88887643
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.13 E-value=0.0069 Score=59.32 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccch
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEF 263 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l 263 (685)
.+.-++|.|+||+||||+++.|++.+ |.+++.+++..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34568899999999999999999866 466777775444
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.10 E-value=0.0088 Score=65.79 Aligned_cols=72 Identities=25% Similarity=0.246 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh----------Hhhh----------hhHHHHHHHHHH
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM----------FVGV----------GARRVRDLFSAA 282 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~----------~~g~----------~~~~ir~lF~~A 282 (685)
.|.-+++.||+|+||||++..||..+ |..+..+++..+... ..|. .....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 36678999999999999999998755 566666555432110 0010 112234445555
Q ss_pred HhCCCeEEEEcCchh
Q 005661 283 KKRSPCIIFIDEIDA 297 (685)
Q Consensus 283 ~~~~P~ILfIDEID~ 297 (685)
....+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556788999998754
No 222
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.06 E-value=0.004 Score=62.91 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
|..+.|.||||+||||+++.|++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 5579999999999999999999999977654
No 223
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.04 E-value=0.0019 Score=62.78 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCE
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPF 255 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~f 255 (685)
.+.-|+|.|+||+||||+++.|++.++.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 355699999999999999999999876543
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.02 E-value=0.03 Score=58.32 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhC-CCCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccc
Q 005661 200 DEAKQELEEIVHYLRDPKRFTRLG-GKLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSE 262 (685)
Q Consensus 200 de~k~~L~e~v~~l~~~~~~~~~g-~~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~ 262 (685)
+.+++.+.+.+..+-.+.. .+. ...+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 79 ~~~~~~~~~~l~~~l~~~~--~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSAD--KWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGG--GSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCcc--cccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 3455556555444322221 111 2345679999999999999999998754 55666665543
No 225
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.01 E-value=0.0051 Score=62.12 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCCE--------EEeeccchh
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPF--------FSCSGSEFE 264 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~f--------i~vs~s~l~ 264 (685)
..|.-|.|.|+||+||||+++.|+..++.++ ..++..++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3455699999999999999999999998773 356665554
No 226
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.99 E-value=0.0035 Score=61.28 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=27.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
-|.|+|++||||||+++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4889999999999999999999898876543
No 227
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.99 E-value=0.0023 Score=62.24 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCC
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGV 253 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~ 253 (685)
.|.-|+|.|+||+||||+++.|+..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999997643
No 228
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.97 E-value=0.0051 Score=59.43 Aligned_cols=28 Identities=18% Similarity=0.155 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVP 254 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~ 254 (685)
+.-|+|.|+||+||||+++.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468999999999999999999988763
No 229
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.97 E-value=0.003 Score=64.48 Aligned_cols=32 Identities=38% Similarity=0.759 Sum_probs=28.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
..+.|.|++|+||||+++.|++.+|.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999999887653
No 230
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.95 E-value=0.003 Score=67.01 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=46.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeeccc-h-----hhh--HhhhhhHHHHHHHHHHHhCCCeEEEEcCchh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGSE-F-----EEM--FVGVGARRVRDLFSAAKKRSPCIIFIDEIDA 297 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s~-l-----~~~--~~g~~~~~ir~lF~~A~~~~P~ILfIDEID~ 297 (685)
..++|.||+|+|||||++++++.... -.+.+.... + ... ++..+....+..+..+....|.+|++||...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 36999999999999999999997632 234443321 1 010 1100234566677777778899999999864
No 231
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.90 E-value=0.042 Score=61.73 Aligned_cols=106 Identities=18% Similarity=0.125 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh--------------Hhh--------------hhhHHH
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM--------------FVG--------------VGARRV 275 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~--------------~~g--------------~~~~~i 275 (685)
...++|.||||+|||+|++.++... |.+.+++...+-... +.. .+....
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q 360 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHL 360 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHH
Confidence 3358999999999999999998754 445555544321110 000 122345
Q ss_pred HHHHHHHHhCCCeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCc
Q 005661 276 RDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFP 339 (685)
Q Consensus 276 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p 339 (685)
+.++..+....|.+|+||=+..+-.. ... ......+..++..+. . .++.+|.++...
T Consensus 361 ~~~~a~~l~~~p~llilDp~~~Ld~~--~~~-~~~~~~i~~ll~~l~---~-~g~tvilvsh~~ 417 (525)
T 1tf7_A 361 QIIKSEINDFKPARIAIDSLSALARG--VSN-NAFRQFVIGVTGYAK---Q-EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHTTCCSEEEEECHHHHTSS--SCH-HHHHHHHHHHHHHHH---H-TTCEEEEEEECS
T ss_pred HHHHHHHHhhCCCEEEEcChHHHHhh--CCh-HHHHHHHHHHHHHHH---h-CCCEEEEEECcc
Confidence 56666777788999999976666432 111 224445555655543 2 345566666544
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.90 E-value=0.0043 Score=66.06 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 262 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~ 262 (685)
++-|+|.||+|+|||+|+..||+.++.+++..+.-.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 346899999999999999999999998888776554
No 233
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.87 E-value=0.025 Score=67.77 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh-----cCCCE----E----------EeeccchhhhHhhhhhHHHHHHHHHHH-hCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE-----AGVPF----F----------SCSGSEFEEMFVGVGARRVRDLFSAAK-KRS 286 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e-----~~~~f----i----------~vs~s~l~~~~~g~~~~~ir~lF~~A~-~~~ 286 (685)
..-++|+||.|+||||+.|.++.- .|..+ . .+...+............++++...++ ...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 345899999999999999998742 12211 0 111111111111111111222222222 467
Q ss_pred CeEEEEcCchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCCcCcCc
Q 005661 287 PCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLD 343 (685)
Q Consensus 287 P~ILfIDEID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~p~~LD 343 (685)
|.+|+|||.-+=. +......+...++..+. ...+..+|.+|+..+...
T Consensus 753 p~LlLLDEP~~Gl------D~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 753 QSLVILDELGRGT------STHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TCEEEEESTTTTS------CHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred CCEEEEeCCCCCC------CHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHH
Confidence 8999999986321 22222333335554442 224568888999876543
No 234
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.83 E-value=0.005 Score=60.36 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|..+.|+|++|+|||++++.|+..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34689999999999999999999999887654
No 235
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.82 E-value=0.0063 Score=59.27 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
.++-++|.||||+||||+++.|+..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 455699999999999999999999874
No 236
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.81 E-value=0.051 Score=52.20 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.4
Q ss_pred CeEEEEcCCCCChHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAr 245 (685)
+.+++.+|+|+|||+.+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998643
No 237
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.80 E-value=0.0047 Score=60.65 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|.-|.|.|++|+||||+++.|+. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 44689999999999999999998 88776654
No 238
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.79 E-value=0.0048 Score=60.07 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=26.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc-CCCEEEee
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA-GVPFFSCS 259 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~-~~~fi~vs 259 (685)
.-+.|.||||+||||+++.|++.+ +++++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 347899999999999999999987 66555443
No 239
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.78 E-value=0.0037 Score=64.54 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc-CCCEEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA-GVPFFS 257 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~-~~~fi~ 257 (685)
|.-|+|.|+||+||||+++.|+... +.+++.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 4568999999999999999999864 655543
No 240
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.77 E-value=0.02 Score=65.61 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-++++||||||||+++..+...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 6999999999999998877644
No 241
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.72 E-value=0.0063 Score=64.05 Aligned_cols=38 Identities=34% Similarity=0.543 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccch
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEF 263 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~l 263 (685)
.|+-++|.||+|+|||+|+..+|+..+.+++.++.-.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 45678999999999999999999999988877765443
No 242
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.72 E-value=0.0076 Score=57.56 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeec
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSG 260 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~ 260 (685)
.+.-++|.|+||+||||+++.++..+ +.++..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34568999999999999999999877 444555553
No 243
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.70 E-value=0.0077 Score=59.03 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
+.-+.|.||+|+||||+++.|++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999998874
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.62 E-value=0.0095 Score=58.24 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
+.-+.|.||+|+|||||++.|++.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999874
No 245
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.62 E-value=0.0069 Score=58.43 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.+.-+.|.||+|+||||+++.|++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999999876
No 246
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.61 E-value=0.0087 Score=59.71 Aligned_cols=32 Identities=25% Similarity=0.538 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
+..+.|.|++|+||||+++.|++.+|++++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 44689999999999999999999999877643
No 247
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.60 E-value=0.02 Score=64.39 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC---CCEEEeeccc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSE 262 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~---~~fi~vs~s~ 262 (685)
|.-|+|+|.||+||||+++.|+..++ .+...++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 44689999999999999999999884 4444555444
No 248
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.60 E-value=0.013 Score=63.97 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
..|.-|+|+|+||+||||+++.++..++..++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 345679999999999999999999998765543
No 249
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.60 E-value=0.054 Score=57.61 Aligned_cols=39 Identities=23% Similarity=0.091 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
|..+..-++|.|+||+|||+|+..+|..+ +.++.+++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 34444459999999999999999998764 6777776653
No 250
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.54 E-value=0.011 Score=64.00 Aligned_cols=23 Identities=52% Similarity=0.780 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.|.|++..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999855
No 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.54 E-value=0.016 Score=59.84 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||++.|++..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999999855
No 252
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.54 E-value=0.0094 Score=60.38 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
..+.|.||+|+||||+++.|++.+|.+++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 358899999999999999999999987663
No 253
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.52 E-value=0.022 Score=54.94 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
+.+++.+|+|+|||+++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 369999999999999988776643
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.51 E-value=0.0084 Score=58.42 Aligned_cols=28 Identities=32% Similarity=0.627 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCE
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPF 255 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~f 255 (685)
+.|+|+||+|+|||+|++.|..+..-.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3589999999999999999988764333
No 255
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.0084 Score=57.30 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
.+-+.|.||+|+|||||++.|++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34688999999999999999998753
No 256
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.50 E-value=0.021 Score=58.13 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.+.+++..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
No 257
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.49 E-value=0.0066 Score=62.69 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
|.-|.|+|+||+||||+++.|+ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4468999999999999999999 678776544
No 258
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.49 E-value=0.049 Score=65.39 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIAG 249 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~ 249 (685)
.-++|+||.|+||||+.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999943
No 259
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.051 Score=53.99 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.4
Q ss_pred CeEEEEcCCCCChHHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIA 248 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA 248 (685)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998766553
No 260
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.44 E-value=0.018 Score=59.15 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||++.|++..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999999854
No 261
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.41 E-value=0.02 Score=65.81 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccch
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEF 263 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l 263 (685)
.+.-|+|+|+||+||||++++|+..+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45569999999999999999999998 999998875444
No 262
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.38 E-value=0.021 Score=61.21 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.|.|++..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999854
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.37 E-value=0.14 Score=57.13 Aligned_cols=27 Identities=37% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..+.-+.|.||+|+||||+++.|++.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 344458899999999999999999865
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.29 E-value=0.026 Score=54.79 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
+.-+.|.||+|+||||+++.|++.+ +.+++..+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 4458899999999999999999865 6666655443
No 265
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.28 E-value=0.011 Score=56.43 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=24.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeeccc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 262 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~ 262 (685)
-++|.||+|+||||+++.|++..+. .+.+++.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 4789999999999999999986543 23444433
No 266
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.27 E-value=0.0098 Score=63.36 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeec
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 260 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~ 260 (685)
+-|+|.||+|+|||++|+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468999999999999999999999876665554
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.26 E-value=0.0087 Score=58.22 Aligned_cols=31 Identities=35% Similarity=0.531 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC--CCEEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG--VPFFS 257 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~--~~fi~ 257 (685)
+.-+.|.||+|+||||+++.|++.++ +.++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34588999999999999999999887 54443
No 268
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.26 E-value=0.0093 Score=58.88 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeec
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 260 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~ 260 (685)
.++++|.||+|+|||+||..++...+ +++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 45799999999999999999998876 6555543
No 269
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.24 E-value=0.018 Score=56.22 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=40.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhh-------hHhhhh-----hHHHHHHHHHHHhCCCeEEEEc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEE-------MFVGVG-----ARRVRDLFSAAKKRSPCIIFID 293 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~-------~~~g~~-----~~~ir~lF~~A~~~~P~ILfID 293 (685)
-.+++||+|+|||+.+-.++..+ +..++.+....-.. ...|.. .....++++.+.. ...+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEEE
Confidence 47889999999999888887765 55555543211000 011100 0111345554432 35799999
Q ss_pred Cchhh
Q 005661 294 EIDAI 298 (685)
Q Consensus 294 EID~l 298 (685)
|++-+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 99875
No 270
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.21 E-value=0.12 Score=53.64 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=34.1
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCC----CCCCeEEEEcCCCCChHHHHHHHHH
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGG----KLPKGVLLVGPPGTGKTMLARAIAG 249 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~----~~pkgvLL~GPPGTGKT~LAralA~ 249 (685)
.+|+++.-.++..+.|++. .+..+..++.... ...+.+++.+|+|+|||+.+-..+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 4578877667766666542 1222322222111 1135899999999999998665443
No 271
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.21 E-value=0.011 Score=62.23 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcCCCEEEeecc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS 261 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s 261 (685)
+-++|.||+|+|||+|+..||..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3588999999999999999999998777666544
No 272
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.19 E-value=0.023 Score=61.07 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+-|.||+|+|||||.+.|++..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48899999999999999999854
No 273
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.12 E-value=0.28 Score=47.59 Aligned_cols=57 Identities=19% Similarity=0.112 Sum_probs=34.8
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCC---CCCCeEEEEcCCCCChHHHHHHHHH
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGG---KLPKGVLLVGPPGTGKTMLARAIAG 249 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~---~~pkgvLL~GPPGTGKT~LAralA~ 249 (685)
.+|+|+.-.++..+.|.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 4688887777776666541 1333333322110 1124699999999999987665543
No 274
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.09 E-value=0.024 Score=60.95 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.+.|++..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999854
No 275
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.09 E-value=0.057 Score=63.69 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e 250 (685)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999977776543
No 276
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.06 E-value=0.014 Score=57.33 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=27.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
-|.|.||+|||||++++.||+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999884
No 277
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.05 E-value=0.024 Score=60.77 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.+.|++-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999854
No 278
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.03 E-value=0.025 Score=60.55 Aligned_cols=23 Identities=52% Similarity=0.739 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.+.|++..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999854
No 279
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.97 E-value=0.054 Score=57.11 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
...|+-++++||+|+||||++..+|..+ +..+..+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456679999999999999999998765 5566666554
No 280
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.95 E-value=0.022 Score=55.91 Aligned_cols=68 Identities=24% Similarity=0.199 Sum_probs=40.7
Q ss_pred eEEEEcCCCCChH-HHHHHHHHh--cCCCEEEeecc---chhhhH---hhh-----hhHHHHHHHHHHHhCCCeEEEEcC
Q 005661 229 GVLLVGPPGTGKT-MLARAIAGE--AGVPFFSCSGS---EFEEMF---VGV-----GARRVRDLFSAAKKRSPCIIFIDE 294 (685)
Q Consensus 229 gvLL~GPPGTGKT-~LAralA~e--~~~~fi~vs~s---~l~~~~---~g~-----~~~~ir~lF~~A~~~~P~ILfIDE 294 (685)
-.++|||.|+||| .|.+++.+. .+..++.+... .+.+.. .|. ......+++...+ ...+|+|||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDE 99 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDE 99 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEc
Confidence 4788999999999 888888664 36677776533 111110 110 0111223343333 246999999
Q ss_pred chhh
Q 005661 295 IDAI 298 (685)
Q Consensus 295 ID~l 298 (685)
+.-+
T Consensus 100 aQFf 103 (195)
T 1w4r_A 100 GQFF 103 (195)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9976
No 281
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.95 E-value=0.03 Score=61.59 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
.|..++++|+||+||||++..||..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45679999999999999999999866 4556666554
No 282
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.91 E-value=0.016 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+.|.||+|+||||+++.|++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999999985
No 283
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.91 E-value=0.014 Score=55.94 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
+-+.|.||+|+||||+++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998763
No 284
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.90 E-value=0.023 Score=61.20 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.+.|++-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999854
No 285
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.89 E-value=0.14 Score=58.85 Aligned_cols=57 Identities=26% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
..|-+=.-.+.+++.+...+. .. .-.||.||||||||+++-.+...+ +.+++.+..+
T Consensus 183 ~~~~~~~LN~~Q~~AV~~al~---~~-----------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 183 LTFFNTCLDTSQKEAVLFALS---QK-----------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCCSSTTCCHHHHHHHHHHHH---CS-----------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccccCCCCCHHHHHHHHHHhc---CC-----------CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 344443446777777766543 11 147899999999997655444332 5566655544
No 286
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.87 E-value=0.16 Score=49.46 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=32.7
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHH
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTML 243 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~L 243 (685)
..+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 45799987777776666543 133333332211 11225799999999999987
No 287
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.85 E-value=0.092 Score=57.68 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=47.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc----CCCEEEeeccchhhhHh----------h----------hhhHHHHHHHH
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGSEFEEMFV----------G----------VGARRVRDLFS 280 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s~l~~~~~----------g----------~~~~~ir~lF~ 280 (685)
..|+.++++|++|+||||++-.||..+ |..+..+++..+..... + .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 456789999999999999999988654 66777777664321100 0 01222355666
Q ss_pred HHHhCCCeEEEEcCch
Q 005661 281 AAKKRSPCIIFIDEID 296 (685)
Q Consensus 281 ~A~~~~P~ILfIDEID 296 (685)
.++.....+++||=..
T Consensus 178 ~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 6665556799998754
No 288
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.74 E-value=0.056 Score=59.14 Aligned_cols=93 Identities=18% Similarity=0.350 Sum_probs=51.0
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCCCCCCe-EEEEcCCCCChHHHHHHHHHhcCC---CEEEeecc-chh
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGGKLPKG-VLLVGPPGTGKTMLARAIAGEAGV---PFFSCSGS-EFE 264 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~~~pkg-vLL~GPPGTGKT~LAralA~e~~~---~fi~vs~s-~l~ 264 (685)
..+++++.-....+..|++++ . .+.+ ++|.||+|+||||+.+++++.... .++.+.-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~-----------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---K-----------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---T-----------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---H-----------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 356777755544444444431 1 1223 789999999999999999987742 33332211 110
Q ss_pred -h----hHhh-hhhHHHHHHHHHHHhCCCeEEEEcCch
Q 005661 265 -E----MFVG-VGARRVRDLFSAAKKRSPCIIFIDEID 296 (685)
Q Consensus 265 -~----~~~g-~~~~~ir~lF~~A~~~~P~ILfIDEID 296 (685)
. ..+. .........+..+-...|.++++.|+.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000 000112233334444679999999975
No 289
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.68 E-value=0.13 Score=60.84 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e 250 (685)
..-++|+||.|+||||+.|.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 345899999999999999999864
No 290
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.67 E-value=0.074 Score=56.25 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..|.-+.|.||+|+||||+++.|++.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445668999999999999999999865
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.64 E-value=0.1 Score=54.33 Aligned_cols=35 Identities=34% Similarity=0.344 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
+.-+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5668899999999999999998766 5566666654
No 292
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.63 E-value=0.24 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.673 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..|+|.|.||+|||+|..++.+.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 469999999999999999997643
No 293
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.61 E-value=0.017 Score=62.80 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEEEeec
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSG 260 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi~vs~ 260 (685)
++-|+|.||+|+|||+|+..||..++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3457899999999999999999999877766554
No 294
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.57 E-value=0.015 Score=60.49 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
..|.-|.|.||+|+||||+++.|++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4455688999999999999999998775
No 295
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.55 E-value=0.031 Score=59.68 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.|.|++-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999855
No 296
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.50 E-value=0.021 Score=64.13 Aligned_cols=70 Identities=24% Similarity=0.323 Sum_probs=44.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC--CCEEEeeccc-hhh---hH--------hhhhhHHHHHHHHHHHhCCCeEEEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSE-FEE---MF--------VGVGARRVRDLFSAAKKRSPCIIFI 292 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~--~~fi~vs~s~-l~~---~~--------~g~~~~~ir~lF~~A~~~~P~ILfI 292 (685)
+.+++|.||+|+||||+++++++... ...+.+.... +.- .+ .+.....+.++...+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 44799999999999999999998773 2344443321 110 00 0111112344555555678999999
Q ss_pred cCch
Q 005661 293 DEID 296 (685)
Q Consensus 293 DEID 296 (685)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9985
No 297
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.45 E-value=0.097 Score=58.64 Aligned_cols=74 Identities=18% Similarity=0.091 Sum_probs=44.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-------H---hh----------hhhHHHHHHHHH
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------F---VG----------VGARRVRDLFSA 281 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-------~---~g----------~~~~~ir~lF~~ 281 (685)
..|+.|+|+|+||+||||++..||..+ |..+..+++..+... + .+ .....++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346679999999999999999999655 566666665321110 0 00 011222444555
Q ss_pred HHhCCCeEEEEcCchhh
Q 005661 282 AKKRSPCIIFIDEIDAI 298 (685)
Q Consensus 282 A~~~~P~ILfIDEID~l 298 (685)
++.....++|||-...+
T Consensus 179 ~~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHHTTCCEEEEEECCCC
T ss_pred HHHCCCcEEEEeCCCCc
Confidence 55455679999886543
No 298
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.38 E-value=0.021 Score=55.53 Aligned_cols=26 Identities=38% Similarity=0.733 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
++-+.|.||+|+|||||++.|++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34689999999999999999998653
No 299
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.32 E-value=0.036 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
.++-+.|.||+|+|||+|++.|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445689999999999999999998764
No 300
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.28 E-value=0.088 Score=54.69 Aligned_cols=35 Identities=29% Similarity=0.189 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeec
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSG 260 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~ 260 (685)
.++.+.++|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34568889999999999999998765 455555544
No 301
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.27 E-value=0.025 Score=55.94 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+.|.||+|+|||||++.|++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999999976
No 302
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.26 E-value=0.29 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..|+|.|++|+|||+|+.++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 303
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.25 E-value=0.024 Score=57.06 Aligned_cols=30 Identities=37% Similarity=0.635 Sum_probs=26.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~v 258 (685)
-+-|.||||+||||+++.|+..++++++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 367899999999999999999999887754
No 304
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.23 E-value=0.11 Score=61.19 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e 250 (685)
...++|+||.|+||||+.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 446899999999999999999864
No 305
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.21 E-value=0.032 Score=54.02 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=28.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhcCCCEEEeeccc
Q 005661 230 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSE 262 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~~~~fi~vs~s~ 262 (685)
+|++|++|+|||++|..++.. +.|.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 306
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.20 E-value=0.02 Score=56.75 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHH-Hhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIA-GEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA-~e~ 251 (685)
+.-+.|.||+|+||||+++.|+ +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3458899999999999999999 765
No 307
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.20 E-value=0.24 Score=47.36 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.5
Q ss_pred CeEEEEcCCCCChHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAr 245 (685)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 308
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.18 E-value=0.16 Score=50.04 Aligned_cols=54 Identities=26% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~LAr 245 (685)
..+|+++.-.....+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 45699987777776666542 133333232211 1113579999999999998543
No 309
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.15 E-value=0.051 Score=56.76 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
...+.-+.|.||+|+||||+++.||+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445568899999999999999999875
No 310
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.14 E-value=0.076 Score=60.43 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcC----CCEEEeeccchh
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGSEFE 264 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~----~~fi~vs~s~l~ 264 (685)
+.+..|+|+|+||+||||+|++|+..++ .+++.++...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 3445689999999999999999999875 788888765543
No 311
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.13 E-value=0.033 Score=52.61 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||.|+|||||++.+++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999999987
No 312
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.96 E-value=0.03 Score=56.10 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVP 254 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~ 254 (685)
-+-|.||+|+||||+++.|++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 47799999999999999999988754
No 313
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.90 E-value=0.057 Score=53.73 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=23.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhc---CCCEEEee
Q 005661 230 VLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 259 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e~---~~~fi~vs 259 (685)
.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5589999999999888887655 66666554
No 314
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.89 E-value=0.036 Score=54.02 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
.-+.|.||+|+|||||++.|++...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999999874
No 315
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.88 E-value=0.39 Score=46.85 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=31.1
Q ss_pred CCCCCCCcC-CCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005661 188 ESNTKFSDV-KGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 188 ~~~~~f~dV-~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~LAr 245 (685)
.+..+|+|. .-..+..+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 345678884 3344454444432 133333332221 1123579999999999998644
No 316
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.88 E-value=0.032 Score=55.80 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=26.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFS 257 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~ 257 (685)
-|.|.|++|||||++++.||+.+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999999865
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.86 E-value=0.24 Score=54.19 Aligned_cols=71 Identities=23% Similarity=0.179 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchhhh-------H---hh-------h---hhHHHHHHHHHH
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFEEM-------F---VG-------V---GARRVRDLFSAA 282 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~~~-------~---~g-------~---~~~~ir~lF~~A 282 (685)
.|..+++.||+|+||||++..+|..+ +..+..+++...... + .+ . .....+..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999765 455555555322111 0 00 0 012235566666
Q ss_pred HhCCCeEEEEcCch
Q 005661 283 KKRSPCIIFIDEID 296 (685)
Q Consensus 283 ~~~~P~ILfIDEID 296 (685)
+.....+++||=..
T Consensus 177 ~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 177 RLEARDLILVDTAG 190 (425)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HHCCCCEEEEcCCC
Confidence 54556788888654
No 318
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.85 E-value=0.23 Score=60.26 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHH
Q 005661 227 PKGVLLVGPPGTGKTMLARAIA 248 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA 248 (685)
...++|+||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3569999999999999999983
No 319
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.82 E-value=0.23 Score=49.26 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=32.6
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~LAr 245 (685)
+-.+|+++.-.++..+.+.+. .+..+..++..- ....+.+++.+|+|+|||+.+-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 446788887666666655531 133333222211 1112479999999999998744
No 320
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.79 E-value=0.04 Score=57.80 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=24.6
Q ss_pred CCCCCCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 223 GGKLPKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 223 g~~~pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
.++....+.|+||+|+|||||++.|++...
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 344444589999999999999999998873
No 321
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.77 E-value=0.014 Score=56.53 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998874
No 322
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.76 E-value=0.031 Score=58.03 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=25.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC---CCEEEeeccchh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCSGSEFE 264 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~---~~fi~vs~s~l~ 264 (685)
.-|.|.||+|+||||+++.|+..++ ..+..++..++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999998775 445555655543
No 323
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.73 E-value=0.76 Score=48.14 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=32.6
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHHHHHHH
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLARAIA 248 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~LAralA 248 (685)
.+|+++.-.....+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHH
Confidence 3577776666666665542 133333332211 1113579999999999998765443
No 324
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.70 E-value=0.057 Score=53.93 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC--CCEEEe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG--VPFFSC 258 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~--~~fi~v 258 (685)
+.-|.|.||||+||||+++.|++.++ .+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34588999999999999999999886 455443
No 325
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.60 E-value=0.069 Score=57.23 Aligned_cols=52 Identities=31% Similarity=0.353 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHH-hcCch--hhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 200 DEAKQELEEIVHY-LRDPK--RFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 200 de~k~~L~e~v~~-l~~~~--~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
+.+++.+.+.+.. +.... .--.+....|.-+.|.||+|+||||+++.||+.+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4555555544433 43221 1011233445568999999999999999999875
No 326
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.56 E-value=0.12 Score=57.12 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC---CCEEEee
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG---VPFFSCS 259 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~---~~fi~vs 259 (685)
|.-|+|+|.||+|||++++.++..++ .+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45699999999999999999998874 3444444
No 327
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.54 E-value=0.33 Score=55.36 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..-+.|.||+|+|||||++.+++..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3458999999999999999999865
No 328
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.54 E-value=0.57 Score=48.96 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=32.4
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhh-----hCCCCCCeEEEEcCCCCChHHHHHHH
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTR-----LGGKLPKGVLLVGPPGTGKTMLARAI 247 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~-----~g~~~pkgvLL~GPPGTGKT~LAral 247 (685)
.+|+++.-..+..+.|.+. .+..+..++. +-...++.+++.+|+|+|||+.+-..
T Consensus 5 ~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM--KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHH
Confidence 4577776666666655541 1222322221 11113468999999999999865543
No 329
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.52 E-value=0.094 Score=56.05 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=43.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCC--CEEEeecc-chh-----hh--Hh-------hh-hhHHHHHHHHHHHhCCCe
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGV--PFFSCSGS-EFE-----EM--FV-------GV-GARRVRDLFSAAKKRSPC 288 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~--~fi~vs~s-~l~-----~~--~~-------g~-~~~~ir~lF~~A~~~~P~ 288 (685)
...++|.||+|+|||||++++++.... -.+.+... ++. .. ++ +. ....++..+..+....|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 346999999999999999999987632 23333321 110 00 11 10 122355666666667899
Q ss_pred EEEEcCch
Q 005661 289 IIFIDEID 296 (685)
Q Consensus 289 ILfIDEID 296 (685)
.+++||+.
T Consensus 255 ~~l~~e~r 262 (361)
T 2gza_A 255 RILLAELR 262 (361)
T ss_dssp EEEESCCC
T ss_pred EEEEcCch
Confidence 99999975
No 330
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.44 E-value=0.047 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e 250 (685)
.+|+||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 348999999999999999999874
No 331
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.35 E-value=0.087 Score=52.25 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=33.2
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~LAr 245 (685)
+..+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 346799987666666655432 133333332211 1112569999999999998643
No 332
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.24 E-value=0.16 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-|.|+|+||+|||+++..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998765
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.18 E-value=0.042 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-.+|+||.|+|||+++++|...++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 467999999999999999988764
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.15 E-value=0.051 Score=56.71 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
+.-+-|.||+|+|||||++.|++.++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999765
No 335
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.08 E-value=0.34 Score=48.48 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=31.8
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~LAr 245 (685)
..+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 35688887666666555432 122333332211 1123579999999999998643
No 336
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.05 E-value=0.15 Score=56.19 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e 250 (685)
+-.++.|+||||||++.+.++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 35789999999999999888754
No 337
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.096 Score=49.43 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHhcCchhhhhhCCCCCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 199 VDEAKQELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 199 ~de~k~~L~e~v~~l~~~~~~~~~g~~~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
....++++.+++..+... .......|++.|++|+|||+|..++.+..
T Consensus 26 ~~~l~~~l~~~~~~~~~~------~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGG------GGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCC------CCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455555555554433221 12334479999999999999999998754
No 338
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.86 E-value=0.053 Score=52.66 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+||||+++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999875
No 339
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.86 E-value=0.032 Score=56.46 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc-CCCEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA-GVPFF 256 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~-~~~fi 256 (685)
+.-|.|.|++|+||||+++.|++.+ +..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4468999999999999999999998 44443
No 340
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.85 E-value=0.096 Score=65.37 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
..-+.|+||+|+|||||++.|.+...
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CcEEEEEecCCCcHHHHHHHhccccc
Confidence 33489999999999999999998763
No 341
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.80 E-value=0.063 Score=53.50 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
|+-|.|.|++|+||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44689999999999999999999983
No 342
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.77 E-value=0.18 Score=56.89 Aligned_cols=23 Identities=43% Similarity=0.730 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+-|.||.|+|||||+++|++..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 343
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.75 E-value=0.11 Score=58.79 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcC----CCEEEeeccchh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAG----VPFFSCSGSEFE 264 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~----~~fi~vs~s~l~ 264 (685)
+..+.|.|++|+|||||+++|++.++ ..+..+++..+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 34588999999999999999999874 345556665543
No 344
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.69 E-value=0.09 Score=51.27 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.4
Q ss_pred CeEEEEcCCCCChHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAr 245 (685)
+.+++.+|+|+|||+.+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998643
No 345
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.64 E-value=0.12 Score=59.01 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..-+.|.||+|+|||||++.+++..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3348899999999999999999865
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.61 E-value=0.11 Score=54.72 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
..|.-+.|.||+|+||||+++.|++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455688999999999999999998775
No 347
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.59 E-value=0.28 Score=55.74 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+.|.||+|+|||||++.+++..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 348899999999999999999865
No 348
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.59 E-value=0.26 Score=49.58 Aligned_cols=90 Identities=19% Similarity=0.096 Sum_probs=47.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccc-------hhhhHhhhh-----hHHHHHHHHHHHhCCCeEEEEc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSE-------FEEMFVGVG-----ARRVRDLFSAAKKRSPCIIFID 293 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~-------l~~~~~g~~-----~~~ir~lF~~A~~~~P~ILfID 293 (685)
-.+++||.|+|||+.+-..+..+ |..++.+.... +.+. .|.. .....++++.+ ....+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 36789999999997666555433 55554443210 1110 0110 00112345444 335799999
Q ss_pred CchhhcCCCCCCchHHHHHHHHHHHHHhhccccCCCEEEEEecCC
Q 005661 294 EIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNF 338 (685)
Q Consensus 294 EID~l~~~r~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 338 (685)
|+.-+. . +.+++..++. .++.||++.-+
T Consensus 98 EaQF~~--------~-----v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 98 EGQFFP--------D-----IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SGGGCT--------T-----HHHHHHHHHH----TTCEEEEECCS
T ss_pred chhhhh--------h-----HHHHHHHHHh----CCCEEEEEecc
Confidence 999762 1 4455555542 45566666543
No 349
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.57 E-value=0.068 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.+.-+.|.||+|+|||||++.|++.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34457899999999999999999876
No 350
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.55 E-value=0.31 Score=56.60 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCChHHHHH
Q 005661 227 PKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAr 245 (685)
.+.+++.||+|+|||+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5689999999999999873
No 351
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.51 E-value=0.51 Score=50.08 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=34.5
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHHHHHH
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLARAI 247 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~LAral 247 (685)
...+|+++.-.++..+.|... .+..+..++... ....+.+++.+|+|+|||+.+-..
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 345799987777776666542 133333332211 111256999999999999765543
No 352
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.50 E-value=0.44 Score=50.47 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHHHH
Q 005661 191 TKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 191 ~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~LAr 245 (685)
.+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHH
Confidence 4678877667666666541 133332222211 1113469999999999998744
No 353
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.42 E-value=0.59 Score=49.84 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=25.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc----CCCEEEeecc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 261 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s 261 (685)
++++..|+|+|||+.+-.++... +.+.+.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999988876554 5566555543
No 354
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.38 E-value=0.082 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..-+.|.||+|+|||++++.+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999998764
No 355
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.35 E-value=0.32 Score=56.36 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=32.6
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhh--h--CCCCCCeEEEEcCCCCChHHHHHH
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTR--L--GGKLPKGVLLVGPPGTGKTMLARA 246 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~--~--g~~~pkgvLL~GPPGTGKT~LAra 246 (685)
+.+|+++.-.+..++.+.+. .+..+..++. + .....+.+++.||+|+|||+.+-.
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~--g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKR--GIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTT--SCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHH
Confidence 35688887666665555431 1212221111 1 123456899999999999998843
No 356
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.30 E-value=0.2 Score=54.71 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=28.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEeecc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGS 261 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs~s 261 (685)
.+||.+|+|+|||..+-.++...+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999998888888777777655
No 357
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.25 E-value=0.13 Score=59.60 Aligned_cols=19 Identities=47% Similarity=0.686 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCChHHHHH
Q 005661 227 PKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAr 245 (685)
.+.+++.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4579999999999999884
No 358
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.23 E-value=0.35 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||||+|||||.+.+++..
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48899999999999999999754
No 359
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.23 E-value=0.19 Score=47.02 Aligned_cols=22 Identities=41% Similarity=0.741 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-+.|.|+||+|||+|.+++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 360
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.18 E-value=0.52 Score=49.74 Aligned_cols=56 Identities=20% Similarity=0.106 Sum_probs=32.4
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCC---CCCCeEEEEcCCCCChHHHHHHH
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGG---KLPKGVLLVGPPGTGKTMLARAI 247 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~---~~pkgvLL~GPPGTGKT~LAral 247 (685)
..+|+|+.-.++..+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHH
Confidence 45788887667666666531 1222322221110 01246999999999999865543
No 361
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.17 E-value=0.066 Score=52.79 Aligned_cols=22 Identities=50% Similarity=0.588 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-+.|.||+|+|||||++.+++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999975
No 362
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.17 E-value=0.12 Score=47.31 Aligned_cols=21 Identities=57% Similarity=0.987 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q 005661 229 GVLLVGPPGTGKTMLARAIAG 249 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~ 249 (685)
-|+|.|+||+|||+|.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.16 E-value=0.092 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.+.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35568899999999999999999866
No 364
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.15 E-value=0.29 Score=48.35 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..|+|.|++|+|||+|..++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 359999999999999999998743
No 365
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.15 E-value=0.17 Score=58.03 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+-|.||.|+|||||.+.|++..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 48899999999999999999855
No 366
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.14 E-value=0.054 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||+|+|||||.+.|++...
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 488999999999999999998653
No 367
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.09 E-value=0.056 Score=54.35 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+.|.||+|+|||||++.|++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999865
No 368
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.03 E-value=0.089 Score=52.15 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=26.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCEEEee
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPFFSCS 259 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~fi~vs 259 (685)
.|-|+|..||||||+++.++. +|+|++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 588999999999999999998 898887554
No 369
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.97 E-value=0.23 Score=56.14 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeeccchh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGSEFE 264 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s~l~ 264 (685)
+..|+|+|+||+||||+++.|+..+ |.++..++...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 4568999999999999999999876 4567777665443
No 370
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.90 E-value=0.05 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||+|+|||||.+.+++...
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999999999999999998653
No 371
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.86 E-value=0.068 Score=53.89 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+.|.||+|+|||||.+.+++..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999865
No 372
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.82 E-value=0.096 Score=58.04 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.++|+||||+|||+|++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999887654
No 373
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.81 E-value=0.1 Score=49.94 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc---CCCEEEee
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCS 259 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs 259 (685)
+-+.|.|++|+||||++..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999998865 44444443
No 374
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.76 E-value=0.48 Score=47.78 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..|+|.|++|+|||+|..++.+.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998754
No 375
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.75 E-value=1.3 Score=48.50 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc--------CCCEEEeecc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA--------GVPFFSCSGS 261 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~--------~~~fi~vs~s 261 (685)
+.+++.+|+|+|||..+-..+... +...+.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 379999999999999876655433 4455555443
No 376
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.72 E-value=0.77 Score=43.15 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-|+|.|++|+|||+|++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 377
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.62 E-value=0.14 Score=50.56 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc---CCCEEEe
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA---GVPFFSC 258 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~---~~~fi~v 258 (685)
.-|.|.|++|+||||+++.|+..+ +.+++.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 347889999999999999999876 4555544
No 378
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.53 E-value=0.11 Score=58.18 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGV 253 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~ 253 (685)
+..|+|.|.+|+||||++++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999874
No 379
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.47 E-value=0.07 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||+|+|||||.+.|++...
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998653
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.37 E-value=0.4 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..-+.|.|+||+||||+++.++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999998754
No 381
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.30 E-value=0.067 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.+.|++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999865
No 382
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.26 E-value=0.071 Score=54.19 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||+|+|||||.+.|++...
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999998663
No 383
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.23 E-value=0.084 Score=52.32 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||.|+|||||.+.+++..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999865
No 384
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.23 E-value=0.09 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||.|+|||||.+.|++..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999863
No 385
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.21 E-value=0.082 Score=53.51 Aligned_cols=22 Identities=41% Similarity=0.776 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-+.|.||+|+|||||.+.|++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999985
No 386
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.20 E-value=0.078 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
.-+.|.||+|+|||||.+.|++...
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3588999999999999999998653
No 387
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.15 E-value=0.11 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 388
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.12 E-value=0.08 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||+|+|||||.+.|++...
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 488999999999999999998653
No 389
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.08 E-value=0.085 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
.-+.|.||+|+|||||++.|++...
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3488999999999999999998763
No 390
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.05 E-value=0.57 Score=50.78 Aligned_cols=23 Identities=48% Similarity=0.674 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-++|.||+|+|||+|++.|++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 59999999999999999998754
No 391
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.03 E-value=0.11 Score=48.88 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHh
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e 250 (685)
.+..|++.|++|+|||+|...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999864
No 392
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.03 E-value=0.11 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 393
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.01 E-value=0.075 Score=53.07 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+.|.||.|+|||||.+.|++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999865
No 394
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.99 E-value=0.076 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||+|+|||||.+.|++...
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999999999999999998653
No 395
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.99 E-value=0.18 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
+-|.|.||+|+||||+++.|+..+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 348889999999999999999876
No 396
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.93 E-value=0.077 Score=53.36 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||.|+|||||.+.|++...
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999998653
No 397
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.85 E-value=1.4 Score=48.44 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e 250 (685)
+.+++.+|+|+|||..+-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 36999999999999987665543
No 398
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.83 E-value=0.089 Score=53.79 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||.|+|||||.+.|++...
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 488999999999999999998653
No 399
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.79 E-value=0.3 Score=52.30 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCChHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAI 247 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAral 247 (685)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999955444
No 400
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.78 E-value=0.09 Score=53.55 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||.|+|||||.+.|++...
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999999999999999998653
No 401
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.76 E-value=0.12 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.+.|.||+|+|||||.+.|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 402
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.70 E-value=0.52 Score=49.45 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=33.3
Q ss_pred CCCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhCC---CCCCeEEEEcCCCCChHHHHH
Q 005661 189 SNTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLGG---KLPKGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 189 ~~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g~---~~pkgvLL~GPPGTGKT~LAr 245 (685)
...+|+++.-.+...+.|... .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 345799987777776666542 1333332222110 112469999999999998743
No 403
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.65 E-value=0.084 Score=53.55 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=21.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||.|+|||||.+.|++...
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 488999999999999999998763
No 404
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.65 E-value=0.77 Score=46.20 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.4
Q ss_pred CeEEEEcCCCCChHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLAR 245 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAr 245 (685)
+.+++.+|+|+|||+.+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998654
No 405
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.59 E-value=0.2 Score=50.86 Aligned_cols=22 Identities=45% Similarity=0.671 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|.|.|+||+|||+|.+++.+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 406
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.51 E-value=0.15 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.+++.|++|+|||+|++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
No 407
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.50 E-value=0.75 Score=43.19 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|.+.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 408
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.48 E-value=0.11 Score=55.20 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVP 254 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~ 254 (685)
..-+.|.||+|+|||||++.|++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458999999999999999999987643
No 409
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.44 E-value=0.25 Score=48.98 Aligned_cols=29 Identities=24% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPF 255 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~f 255 (685)
++-|.|.|++|+||||+++.++..++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 34588999999999999999999997643
No 410
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.43 E-value=0.13 Score=46.75 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 411
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=90.41 E-value=1.4 Score=48.09 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=34.9
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhh-----hCCCCCCeEEEEcCCCCChHHHH-HHHHH
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTR-----LGGKLPKGVLLVGPPGTGKTMLA-RAIAG 249 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~-----~g~~~pkgvLL~GPPGTGKT~LA-ralA~ 249 (685)
..+|+++.-.++..+.|... .+..|..++. +-...++.+|+.||+|+|||+.+ -.+..
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 35788887777766666531 1333322221 11123578999999999999874 34443
No 412
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.39 E-value=0.091 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~ 252 (685)
-+.|.||.|+|||||.+.|++...
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 488999999999999999998763
No 413
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.38 E-value=0.22 Score=48.20 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
..++|.|++|+|||+|+..++....
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999998753
No 414
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.24 E-value=0.13 Score=59.03 Aligned_cols=33 Identities=39% Similarity=0.635 Sum_probs=23.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc----CCCEEEeecc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA----GVPFFSCSGS 261 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~----~~~fi~vs~s 261 (685)
.+++.||||||||+++..++..+ +.+++.+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 58899999999999887776543 3455555433
No 415
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.21 E-value=0.17 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
++-|.|.|++|+||||+++.|+..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998876
No 416
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.19 E-value=0.13 Score=47.80 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-.+|+||.|+|||++..||.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999997544
No 417
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.11 E-value=0.76 Score=51.80 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCCChHHHH
Q 005661 227 PKGVLLVGPPGTGKTMLA 244 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LA 244 (685)
.+.+|+.+|+|+|||+.+
T Consensus 60 ~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEcCCCcHHHHHH
Confidence 457999999999999853
No 418
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.08 E-value=0.088 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
+.+.|.||+|+|||||++.|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999998763
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.03 E-value=0.15 Score=47.21 Aligned_cols=22 Identities=36% Similarity=0.748 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-+.|.|++|+|||+|.+.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 420
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.00 E-value=0.17 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.|++.|++|+|||+|..++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998643
No 421
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.96 E-value=0.16 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.|++.|++|+|||+|++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 422
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.95 E-value=0.84 Score=43.78 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|+|.|++|+|||+|.+.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 423
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.91 E-value=1.1 Score=44.62 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
+..|+|.|++|+|||+|...+.+.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999998643
No 424
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.83 E-value=0.13 Score=52.60 Aligned_cols=24 Identities=50% Similarity=0.855 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+.|.||+|+|||||.+.|++..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999876
No 425
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.79 E-value=0.15 Score=54.89 Aligned_cols=23 Identities=48% Similarity=0.712 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.|.|++..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999865
No 426
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.73 E-value=0.13 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-|+|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 427
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.72 E-value=0.19 Score=45.60 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e 250 (685)
..|++.|++|+|||+|.+.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
No 428
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=89.70 E-value=0.86 Score=49.58 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=16.9
Q ss_pred CeEEEEcCCCCChHHHH-HHHH
Q 005661 228 KGVLLVGPPGTGKTMLA-RAIA 248 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LA-ralA 248 (685)
+.+|+.||+|+|||+.+ -++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999975 4343
No 429
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.64 E-value=0.46 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.|+||+|||||..++.+..
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998753
No 430
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.62 E-value=0.19 Score=45.73 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.|++.|++|+|||+|.+++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 431
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.60 E-value=0.16 Score=46.59 Aligned_cols=22 Identities=55% Similarity=0.866 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|+|.|+||+|||+|.+.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5999999999999999999764
No 432
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.55 E-value=0.19 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.|++.|++|+|||+|.+.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998754
No 433
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=89.55 E-value=0.99 Score=44.45 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=14.9
Q ss_pred CeEEEEcCCCCChHHHH
Q 005661 228 KGVLLVGPPGTGKTMLA 244 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LA 244 (685)
+.+++.+|+|+|||+.+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999864
No 434
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.52 E-value=0.21 Score=49.48 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPF 255 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~f 255 (685)
-+.|.||.|+||||+++.|++. +..+
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 4789999999999999999987 4333
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.44 E-value=0.21 Score=49.90 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCC
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGV 253 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~ 253 (685)
++-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445888999999999999999986543
No 436
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.31 E-value=0.2 Score=46.14 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|.+.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 437
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.30 E-value=0.64 Score=51.98 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCChHHHHHHHH
Q 005661 228 KGVLLVGPPGTGKTMLARAIA 248 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA 248 (685)
+.+|+.+|+|+|||+.+..-+
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~ 61 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPA 61 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 469999999999998655433
No 438
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.28 E-value=0.2 Score=45.73 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 439
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.27 E-value=0.19 Score=47.02 Aligned_cols=22 Identities=36% Similarity=0.748 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-|+|.|++|+|||+|.+.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999874
No 440
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.24 E-value=0.19 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 441
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.23 E-value=0.21 Score=45.65 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|.+.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999865
No 442
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.19 E-value=0.21 Score=46.09 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..|++.|++|+|||+|++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999997643
No 443
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.17 E-value=0.16 Score=55.09 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+.|.||+|+|||||.+.|++..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 348899999999999999999854
No 444
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.13 E-value=0.15 Score=53.02 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=23.7
Q ss_pred hCCCCCC--eEEEEcCCCCChHHHHHHHHHhc
Q 005661 222 LGGKLPK--GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 222 ~g~~~pk--gvLL~GPPGTGKT~LAralA~e~ 251 (685)
+....+. -+.|.||.|+|||||.+.|++..
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3344444 48899999999999999999865
No 445
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.10 E-value=0.25 Score=45.53 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e 250 (685)
+..|++.|++|+|||+|.+.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999763
No 446
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.09 E-value=0.42 Score=48.36 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|.|.|+||+|||+|..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999875
No 447
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.09 E-value=0.33 Score=50.75 Aligned_cols=23 Identities=48% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-++|.|+.|+||||+.+.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999764
No 448
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.05 E-value=0.22 Score=45.26 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|.+++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 449
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.03 E-value=0.19 Score=45.89 Aligned_cols=21 Identities=48% Similarity=0.800 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q 005661 229 GVLLVGPPGTGKTMLARAIAG 249 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~ 249 (685)
-|++.|++|+|||+|++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 450
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.00 E-value=0.23 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 451
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.95 E-value=0.23 Score=45.82 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999999753
No 452
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.92 E-value=0.23 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e 250 (685)
...|++.|++|+|||+|++.+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 453
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.91 E-value=0.32 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCC
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVP 254 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~ 254 (685)
-+.|.||+|+|||||++.|++.....
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC
Confidence 48899999999999999999987544
No 454
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.87 E-value=0.23 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHHh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e 250 (685)
..|+|.|++|+|||+|++.+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999863
No 455
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.81 E-value=1.4 Score=46.72 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCCCCcCCCcHHHHHHHHHHHHHhcCchhhhhhC---CCCCCeEEEEcCCCCChHHHH
Q 005661 190 NTKFSDVKGVDEAKQELEEIVHYLRDPKRFTRLG---GKLPKGVLLVGPPGTGKTMLA 244 (685)
Q Consensus 190 ~~~f~dV~G~de~k~~L~e~v~~l~~~~~~~~~g---~~~pkgvLL~GPPGTGKT~LA 244 (685)
-.+|+++.-.+...+.|... .+..|..++... ....+.+++.+|+|+|||+.+
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 35699986666666666532 133333222211 112357999999999999843
No 456
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=88.78 E-value=0.75 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.+.|.|+||+|||+|.+++.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48899999999999999998643
No 457
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.69 E-value=2.2 Score=44.97 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e 250 (685)
+..+++.|+||+|||+|..++++.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446999999999999999999864
No 458
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.63 E-value=0.25 Score=44.93 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|...+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 459
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.61 E-value=0.26 Score=51.76 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPF 255 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~f 255 (685)
.+|++|.|++|+|||++|.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 358999999999999999999875 4443
No 460
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.58 E-value=0.11 Score=49.74 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..-+.|.|++|+|||+|.+++++..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3358999999999999999997643
No 461
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.57 E-value=0.11 Score=55.56 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.+.|++..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999855
No 462
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.54 E-value=0.25 Score=47.08 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHh
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e 250 (685)
+..|+|.|++|+|||+|++.+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 446999999999999999999764
No 463
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.52 E-value=0.24 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|.+.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999853
No 464
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.47 E-value=0.25 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.|++.|++|+|||+|.+.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998643
No 465
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.42 E-value=0.43 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..++++.||+|+|||++++.++...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999987543
No 466
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.41 E-value=0.26 Score=51.69 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhcCCCEE
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEAGVPFF 256 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~~~~fi 256 (685)
.+|+||.|++|+|||++|-.+.. .|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 45899999999999999999865 444443
No 467
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.39 E-value=0.23 Score=54.91 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHHhc
Q 005661 227 PKGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~LAralA~e~ 251 (685)
..-+.|.||+|+|||||+|.|++..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3349999999999999999999865
No 468
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.37 E-value=0.45 Score=47.36 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc--CCCEEEee
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA--GVPFFSCS 259 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~--~~~fi~vs 259 (685)
..+++.|.+|+||||++..++..+ |..+..++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 458899999999999999998654 44554444
No 469
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.36 E-value=0.29 Score=44.70 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e 250 (685)
..|++.|++|+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999763
No 470
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.34 E-value=0.26 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.|++.|++|+|||+|..++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998643
No 471
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.32 E-value=0.24 Score=48.80 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=28.4
Q ss_pred CCCCCeEEEEcCCCCChHHHHHHHHHhcCCC-EEEeeccc
Q 005661 224 GKLPKGVLLVGPPGTGKTMLARAIAGEAGVP-FFSCSGSE 262 (685)
Q Consensus 224 ~~~pkgvLL~GPPGTGKT~LAralA~e~~~~-fi~vs~s~ 262 (685)
..+++-|+|+|.||+||+++|+.+...++.. +..++.++
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 3455678999999999999999998877532 33344443
No 472
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=88.31 E-value=0.46 Score=48.05 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|+|.|+||+|||+|..++.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999863
No 473
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.29 E-value=0.3 Score=45.70 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHHh
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e 250 (685)
-.|++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 474
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.27 E-value=0.25 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|.+++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
No 475
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.21 E-value=0.27 Score=45.57 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5999999999999999999864
No 476
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.20 E-value=0.27 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999988754
No 477
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.20 E-value=0.27 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.|++.|++|+|||+|+..+.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998653
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.18 E-value=1 Score=56.12 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+-|+||+|+|||||++.|.+-.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCc
Confidence 348899999999999999998855
No 479
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.16 E-value=0.22 Score=58.86 Aligned_cols=22 Identities=45% Similarity=0.682 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-.++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999988777654
No 480
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.15 E-value=0.27 Score=46.34 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|+|.|++|+|||+|.+.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 481
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.14 E-value=0.58 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-++|.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358888999999999999998875
No 482
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.10 E-value=0.27 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|.+.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 483
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.05 E-value=0.28 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
+-|.|.|++|+||||+++.|+..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999876
No 484
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.04 E-value=0.26 Score=46.20 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 485
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.98 E-value=0.32 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
-+.|.||+|+|||||.++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47799999999999999999843
No 486
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.90 E-value=0.28 Score=45.57 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHH
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAG 249 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~ 249 (685)
.+..|++.|++|+|||+|...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
No 487
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.89 E-value=0.27 Score=45.76 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 488
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=87.87 E-value=0.21 Score=50.51 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=24.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhcCCCE
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEAGVPF 255 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~~~~f 255 (685)
-+.|+|++|+|||++++.+...+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 377999999999999999999888775
No 489
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.81 E-value=0.34 Score=46.06 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHH
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAG 249 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~ 249 (685)
.....|++.|++|+|||+|++.+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3344699999999999999999964
No 490
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.80 E-value=0.14 Score=53.69 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHHhcC
Q 005661 226 LPKGVLLVGPPGTGKTMLARAIAGEAG 252 (685)
Q Consensus 226 ~pkgvLL~GPPGTGKT~LAralA~e~~ 252 (685)
...-+.|.||+|+|||||++.|++...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 334589999999999999999998653
No 491
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.79 E-value=0.26 Score=45.35 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|++++.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999753
No 492
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.77 E-value=2.9 Score=46.56 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCCChHHH
Q 005661 227 PKGVLLVGPPGTGKTML 243 (685)
Q Consensus 227 pkgvLL~GPPGTGKT~L 243 (685)
.+.+|+.+|+|+|||+.
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 34799999999999985
No 493
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.76 E-value=0.87 Score=56.63 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHHhc
Q 005661 228 KGVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 228 kgvLL~GPPGTGKT~LAralA~e~ 251 (685)
.-+-|.||+|+|||||++.|++..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999998865
No 494
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.75 E-value=0.3 Score=53.45 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHHHh
Q 005661 230 VLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 230 vLL~GPPGTGKT~LAralA~e 250 (685)
+.|.||+|+|||||.++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999986
No 495
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.72 E-value=0.24 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|++.|++|+|||+|...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
No 496
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.62 E-value=0.45 Score=46.57 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=24.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc--CCCEEEe
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA--GVPFFSC 258 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~--~~~fi~v 258 (685)
=|.|.|+.|+||||+++.|+..+ |.+++.+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 47789999999999999999877 5565544
No 497
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.62 E-value=1.6 Score=51.41 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=25.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHHhc---CCCEEEeecc
Q 005661 225 KLPKGVLLVGPPGTGKTMLARAIAGEA---GVPFFSCSGS 261 (685)
Q Consensus 225 ~~pkgvLL~GPPGTGKT~LAralA~e~---~~~fi~vs~s 261 (685)
..|..+|+.||+|+|||..+-..+-.. |...+.+...
T Consensus 387 ~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 387 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 345689999999999999876554332 5555555443
No 498
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.59 E-value=0.31 Score=45.01 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhc
Q 005661 229 GVLLVGPPGTGKTMLARAIAGEA 251 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e~ 251 (685)
.|++.|++|+|||+|...+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 59999999999999999998643
No 499
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.52 E-value=0.31 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
.|+|.|++|+|||+|.+.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 500
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.50 E-value=0.54 Score=48.07 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHh
Q 005661 229 GVLLVGPPGTGKTMLARAIAGE 250 (685)
Q Consensus 229 gvLL~GPPGTGKT~LAralA~e 250 (685)
-|.|.|+||+|||+|..++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999874
Done!