BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005662
         (685 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1
           PE=1 SV=1
          Length = 684

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/686 (55%), Positives = 487/686 (70%), Gaps = 9/686 (1%)

Query: 5   PSSSPPPSISAPTTPHKRSFTNSHNFLRVKRPSYPHPPPFP-ALCRCSAPSSADNNNNSS 63
           PS S PPS +   +P   S T+S      KR  YPH  P P ALCRCS+ S ++++++SS
Sbjct: 2   PSLSTPPSQNLAFSPAA-SATSSRLTPSSKRSFYPHRLPDPTALCRCSSSSGSNSSSSSS 60

Query: 64  F--NRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHF 121
              N RWD  IQD  K+A+K FDS L  Y    +D   +  +  E  +D+WDWDRWK HF
Sbjct: 61  SDDNPRWDSAIQDVLKSAIKRFDSVLSWYATLDNDDGEQGSENVEKIDDDWDWDRWKKHF 120

Query: 122 DEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQER 181
           D+VDDQ+RL+S+LKSQL  A+ +E+Y+DAARLKVAIAA ATNDAVG+VMS   RA+++ER
Sbjct: 121 DQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMSTFYRALLEER 180

Query: 182 YEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAA 241
           Y+DA  LRD AGAGL      I   VK+  P+           ++    Y   QL+T+AA
Sbjct: 181 YKDAVYLRDKAGAGLVGWWSGISEDVKD--PFGLIVQITAEHGRYVARSYNPRQLSTSAA 238

Query: 242 GVPLFEIFLTVNKKGEYQQQAVYLKRKGVFDDSSVVSSKASGGTGRLNPPGSTEDKDDLL 301
           G PLFEIFLT++ KG Y++QAVYLK K +F D   + S+       L  PG  ED  +L 
Sbjct: 239 GAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDVPTMPSRTLTPGRFLTSPGRKEDTGNLA 298

Query: 302 VVSAEDTEDGDESDDSSDLAEGLSGFQNILRDMIPGVRVKVLKVTAPGKVDRDFISKVIE 361
           V S+ED E  +  DDS  L E  SGFQ+ LRDMIPGV+VKV+KVTAPG+VD+DFISKVIE
Sbjct: 299 VESSEDEESDNSDDDSDLLEES-SGFQSFLRDMIPGVKVKVMKVTAPGRVDKDFISKVIE 357

Query: 362 QIMEEEDEEKDAEVENVESEDEDKDESDEERNEIEMDAGRGIIENEEEQTEVSVKVVVGG 421
           QI +EEDEE D ++E+++ ED+ K E DE+  +IE+++    I +     E++VK V+G 
Sbjct: 358 QIADEEDEENDLDIEDIDVEDDTKAEIDEKNADIELESVTDEIIDNNGGREIAVKFVIGD 417

Query: 422 LVQKLPGNKPAKEFLRVPAKLEKKGRLSFSFSIEKDSKRRDS-GAKDLGSVDNKARLGSQ 480
           +V +L GN+P KE LR PA LE     SF   +EKD   ++S G +    VD K    S+
Sbjct: 418 IVDRLSGNQPLKESLRSPANLESVENSSFYLRLEKDLNVKESKGVEGTTLVDGKGSRQSR 477

Query: 481 RSIENVMLDLAKFIGREK-IPLKVLKDLSELINLSLSQAQNHQPLSGSTTFHRIETATSQ 539
           R IEN+M DLAK I +EK I +K+LKD+ EL++L+LSQAQN Q LSG T F RI+   S 
Sbjct: 478 RRIENIMGDLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTPSL 537

Query: 540 DALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAG 599
           D L+GLYIG HGL TSEVI+L+RKFGQW+     K P+++EFYEYVEA+K+TGDPYVPAG
Sbjct: 538 DPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEYVEAVKLTGDPYVPAG 597

Query: 600 QVAFRAKVGKRYQLPHKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDGKYIK 659
           +VAFRAK+G+RY+LPHKG+IPEEFGVIARYKGQGRLA+PGF+NPRWVDGELVILDGKY+K
Sbjct: 598 KVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGKYVK 657

Query: 660 GGPVVGFVYWAPEYHFLVFFNRLRLQ 685
           GGPVVGFVYWAPEYHF++FFNRLRLQ
Sbjct: 658 GGPVVGFVYWAPEYHFVMFFNRLRLQ 683


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.134    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 277,621,295
Number of Sequences: 539616
Number of extensions: 13334681
Number of successful extensions: 86080
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 657
Number of HSP's that attempted gapping in prelim test: 65323
Number of HSP's gapped (non-prelim): 11351
length of query: 685
length of database: 191,569,459
effective HSP length: 124
effective length of query: 561
effective length of database: 124,657,075
effective search space: 69932619075
effective search space used: 69932619075
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)