Query 005662
Match_columns 685
No_of_seqs 112 out of 128
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 11:50:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12014 DUF3506: Domain of un 100.0 5.2E-52 1.1E-56 385.5 14.1 127 525-655 1-134 (134)
2 PF02151 UVR: UvrB/uvrC motif; 97.1 0.00094 2E-08 50.2 4.5 34 128-161 1-34 (36)
3 PF02151 UVR: UvrB/uvrC motif; 93.3 0.084 1.8E-06 39.8 2.9 26 166-191 4-29 (36)
4 COG3880 Modulator of heat shoc 93.1 0.092 2E-06 52.4 3.8 35 130-164 137-171 (176)
5 PRK07883 hypothetical protein; 85.6 0.94 2E-05 52.0 4.6 35 127-161 404-438 (557)
6 PRK14668 uvrC excinuclease ABC 85.2 1.4 3E-05 51.1 5.8 35 127-161 197-231 (577)
7 PRK14671 uvrC excinuclease ABC 84.8 1.5 3.2E-05 51.3 5.7 36 126-161 212-247 (621)
8 PRK12306 uvrC excinuclease ABC 83.3 1.4 2.9E-05 50.6 4.5 34 128-161 191-224 (519)
9 TIGR00631 uvrb excinuclease AB 83.2 1.3 2.8E-05 51.9 4.5 36 125-160 619-654 (655)
10 PRK05298 excinuclease ABC subu 83.0 1.3 2.9E-05 51.5 4.4 38 125-162 609-646 (652)
11 PRK14666 uvrC excinuclease ABC 82.9 1.4 3.1E-05 52.1 4.6 35 127-161 199-233 (694)
12 PRK14667 uvrC excinuclease ABC 82.5 1.5 3.2E-05 50.8 4.5 35 127-161 197-231 (567)
13 PRK00558 uvrC excinuclease ABC 82.5 1.6 3.4E-05 50.8 4.6 34 128-161 201-234 (598)
14 TIGR00194 uvrC excinuclease AB 81.2 1.8 3.9E-05 50.2 4.5 35 127-161 192-226 (574)
15 PRK14670 uvrC excinuclease ABC 81.1 1.8 3.9E-05 50.2 4.6 35 127-161 175-209 (574)
16 PRK14672 uvrC excinuclease ABC 80.7 2 4.3E-05 51.0 4.7 35 127-161 203-237 (691)
17 PRK14669 uvrC excinuclease ABC 80.2 2.1 4.6E-05 50.2 4.7 35 127-161 201-235 (624)
18 COG0556 UvrB Helicase subunit 78.2 2.7 5.8E-05 48.9 4.6 39 124-162 619-657 (663)
19 COG0322 UvrC Nuclease subunit 74.7 3.7 8E-05 47.9 4.6 34 128-161 201-234 (581)
20 PF10446 DUF2457: Protein of u 70.5 2.3 5E-05 48.1 1.7 15 513-527 214-228 (458)
21 PRK07883 hypothetical protein; 65.6 5.2 0.00011 46.1 3.3 49 141-191 383-433 (557)
22 PRK14666 uvrC excinuclease ABC 65.4 5.3 0.00012 47.6 3.3 50 142-191 179-228 (694)
23 PRK12306 uvrC excinuclease ABC 64.4 6 0.00013 45.6 3.4 49 141-191 169-219 (519)
24 KOG1538 Uncharacterized conser 64.3 4.1 9E-05 48.4 2.1 119 65-188 728-859 (1081)
25 PRK14670 uvrC excinuclease ABC 64.1 5.5 0.00012 46.4 3.1 50 142-191 155-204 (574)
26 PRK14669 uvrC excinuclease ABC 64.0 5.6 0.00012 46.8 3.2 51 141-191 180-230 (624)
27 TIGR00194 uvrC excinuclease AB 63.2 6.1 0.00013 46.0 3.3 49 141-191 171-221 (574)
28 PRK00558 uvrC excinuclease ABC 63.1 6 0.00013 46.1 3.2 48 142-191 180-229 (598)
29 PRK14671 uvrC excinuclease ABC 62.7 6.5 0.00014 46.2 3.4 51 141-191 192-242 (621)
30 PRK14667 uvrC excinuclease ABC 61.9 6.6 0.00014 45.7 3.2 48 142-191 177-226 (567)
31 PRK14668 uvrC excinuclease ABC 59.8 7.9 0.00017 45.1 3.3 48 142-191 177-226 (577)
32 COG3880 Modulator of heat shoc 59.6 9.6 0.00021 38.6 3.4 24 168-191 140-163 (176)
33 PRK14672 uvrC excinuclease ABC 57.7 8.3 0.00018 46.0 3.1 50 142-191 183-232 (691)
34 PF05235 CHAD: CHAD domain; I 55.9 91 0.002 31.0 9.6 58 70-136 24-81 (231)
35 COG0322 UvrC Nuclease subunit 46.6 15 0.00033 43.0 2.9 49 141-191 179-229 (581)
36 PRK05298 excinuclease ABC subu 38.0 92 0.002 36.8 7.5 31 161-191 610-640 (652)
37 PF14559 TPR_19: Tetratricopep 37.3 1.2E+02 0.0025 23.9 5.9 50 141-191 1-50 (68)
38 KOG4825 Component of synaptic 37.2 43 0.00093 38.8 4.4 58 134-191 176-234 (666)
39 KOG2387 CTP synthase (UTP-ammo 34.4 25 0.00055 40.5 2.2 53 539-601 39-93 (585)
40 PF07743 HSCB_C: HSCB C-termin 33.2 1.6E+02 0.0036 24.9 6.4 39 145-188 24-62 (78)
41 KOG1832 HIV-1 Vpr-binding prot 32.0 23 0.00049 43.9 1.4 11 339-349 1370-1380(1516)
42 KOG1832 HIV-1 Vpr-binding prot 32.0 21 0.00046 44.1 1.1 8 207-214 1146-1153(1516)
43 PF04931 DNA_pol_phi: DNA poly 30.0 23 0.00049 42.5 1.0 6 489-494 740-745 (784)
44 PF08336 P4Ha_N: Prolyl 4-Hydr 29.6 50 0.0011 31.0 3.0 41 111-152 70-110 (134)
45 KOG2376 Signal recognition par 29.5 1E+02 0.0022 36.8 5.9 69 131-200 12-81 (652)
46 KOG4825 Component of synaptic 29.1 79 0.0017 36.8 4.8 130 93-259 179-308 (666)
47 COG1685 Archaeal shikimate kin 29.0 2E+02 0.0043 31.5 7.5 81 108-214 173-270 (278)
48 PF10428 SOG2: RAM signalling 28.4 9.5E+02 0.021 27.6 15.7 76 65-142 297-372 (445)
49 KOG0316 Conserved WD40 repeat- 28.0 35 0.00075 36.8 1.8 26 539-564 44-69 (307)
50 PF09059 TyeA: TyeA; InterPro 26.8 46 0.001 30.3 2.1 27 120-146 59-85 (87)
51 PF07304 SRA1: Steroid recepto 26.7 66 0.0014 31.7 3.3 51 130-182 90-140 (157)
52 PLN02673 quinolinate synthetas 26.6 1.6E+02 0.0035 35.8 7.0 16 234-249 213-228 (724)
53 PF06524 NOA36: NOA36 protein; 26.0 31 0.00068 37.3 1.0 7 192-198 91-97 (314)
54 PF14276 DUF4363: Domain of un 25.7 1.3E+02 0.0028 27.6 4.9 59 127-186 25-97 (121)
55 KOG0943 Predicted ubiquitin-pr 25.3 50 0.0011 42.3 2.6 19 583-601 2041-2059(3015)
56 PRK05014 hscB co-chaperone Hsc 23.4 1.7E+02 0.0037 29.1 5.5 20 168-187 128-147 (171)
57 TIGR00631 uvrb excinuclease AB 22.1 70 0.0015 38.0 3.0 28 164-191 623-650 (655)
No 1
>PF12014 DUF3506: Domain of unknown function (DUF3506); InterPro: IPR021894 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif.
Probab=100.00 E-value=5.2e-52 Score=385.52 Aligned_cols=127 Identities=46% Similarity=0.879 Sum_probs=118.2
Q ss_pred CCceeeeecc----CCCCCCCCCceEeeccCCCCceEEEEEeecCCcCCCCCCCCCCCcccceEEEEEEeeCCCCCCCce
Q 005662 525 SGSTTFHRIE----TATSQDALNGLYIGVHGLRTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQ 600 (685)
Q Consensus 525 ~~~tty~rI~----~Pt~~~P~~GIwVGdYg~HG~EfL~l~q~~g~~~~d~~~~~~~~~~~~~~LEAVKLTGDpNVPrGe 600 (685)
+++|||+||+ +||+.|||+|||||+||+||||||+|+|++|+|++++.+.+.++.+|++|||||||||||||||||
T Consensus 1 ~~~ttfstl~p~lytpt~~~P~~GiwVGdyg~hG~Efl~l~q~~~~~~~~~~~~~~~~~~~~~~leAiKLTGDpNVPrGe 80 (134)
T PF12014_consen 1 EGVTTFSTLDPELYTPTPEKPFRGIWVGDYGPHGCEFLLLHQPDGQWDEDDGSKEPSDREFRGRLEAIKLTGDPNVPRGE 80 (134)
T ss_pred CCceEEEecChhccCCCCCCCccceEEcccCCCCeEEEEEEccCCCccccccccccccccccceEEEEEecCCCCCcCcc
Confidence 5789999999 799999999999999999999999999999999988776777889999999999999999999999
Q ss_pred eEEEEE-cCCCcCCC--CCCCCCCcccceeEEeccceecCCCCCCCCceeceEEEEeC
Q 005662 601 VAFRAK-VGKRYQLP--HKGIIPEEFGVIARYKGQGRLAEPGFQNPRWVDGELVILDG 655 (685)
Q Consensus 601 vTFrA~-ig~~~~l~--~~g~~Peelgv~aRykgqG~VA~~GF~np~wIdgeLilis~ 655 (685)
|||+|+ ||++++++ +.+++| | ++|||||||||++||+|++||+|||++|||
T Consensus 81 vtF~A~DiG~~~~i~~a~~~~f~---G-~r~vk~~G~vA~~GF~~~~~id~eLilis~ 134 (134)
T PF12014_consen 81 VTFRADDIGPGGRIRVAHEGPFP---G-ARRVKGQGHVAEPGFRNDKWIDGELILISG 134 (134)
T ss_pred EEEEecccCCCcccccccCCCCC---c-eEEEecCCeEcCcCcCCCcceeeEEEEecC
Confidence 999999 99999987 555555 4 377999999999999999999999999986
No 2
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=97.07 E-value=0.00094 Score=50.24 Aligned_cols=34 Identities=35% Similarity=0.544 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 128 ERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 128 e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
+.++..|+.+|..|++.+||+.|++||+.|.++.
T Consensus 1 ~~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 1 EKLIKELEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999998775
No 3
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=93.26 E-value=0.084 Score=39.82 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 166 VGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 166 Vgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
+-.+...|+.|+++++|+.|++|||.
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~ 29 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQ 29 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 45678899999999999999999996
No 4
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=93.14 E-value=0.092 Score=52.40 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHhcCC
Q 005662 130 LVSILKSQLGNAVFKEEYDDAARLKVAIAAAATND 164 (685)
Q Consensus 130 la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~~D 164 (685)
=...|+.-|+++|+.|||++||-+||.|.++..++
T Consensus 137 ~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~ 171 (176)
T COG3880 137 KIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678999999999999999999999999888654
No 5
>PRK07883 hypothetical protein; Validated
Probab=85.62 E-value=0.94 Score=52.01 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus 404 ~~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 438 (557)
T PRK07883 404 DDAVLAALRARIDRLAAAERFEEAARLRDRLAALL 438 (557)
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999988765
No 6
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=85.25 E-value=1.4 Score=51.08 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
...+...|+.+|+.|.++.+||.||+||+.|.++.
T Consensus 197 ~~~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~ 231 (577)
T PRK14668 197 TGVLADPLRREMEAAAQAQEFERAANLRDRLEAVE 231 (577)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999998855
No 7
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=84.83 E-value=1.5 Score=51.31 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 126 DQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 126 ~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
....+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus 212 ~~~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~ 247 (621)
T PRK14671 212 KTSALIRSLTEEMQRAAAELKFEEAAELKDQIESLK 247 (621)
T ss_pred CcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999998765
No 8
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=83.29 E-value=1.4 Score=50.64 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 128 ERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 128 e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
..++..|+.+|+.|.++.+||.||++|+.|.++.
T Consensus 191 ~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~ 224 (519)
T PRK12306 191 DELIEKLEEEMAEKAKNQQFERALVIRDEINAIE 224 (519)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999999988765
No 9
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=83.18 E-value=1.3 Score=51.88 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 005662 125 DDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAA 160 (685)
Q Consensus 125 e~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~ 160 (685)
++.+.+...|+.+|+.|+++.+||+||+||+.|.++
T Consensus 619 ~~~~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L 654 (655)
T TIGR00631 619 KELKKLIKQLEKEMKQAARNLEFEEAARLRDEILEL 654 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 566788899999999999999999999999999875
No 10
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=83.02 E-value=1.3 Score=51.53 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhc
Q 005662 125 DDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAAT 162 (685)
Q Consensus 125 e~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~ 162 (685)
+..+.+...|+.+|..|+++.+||+||++|+.|.++..
T Consensus 609 ~~~~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~ 646 (652)
T PRK05298 609 KELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKE 646 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999998763
No 11
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=82.90 E-value=1.4 Score=52.15 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
...+...|+.+|+.|+++.+||.||+||+.|.++.
T Consensus 199 ~~~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~ 233 (694)
T PRK14666 199 SGELVDALRTEMEAASEALEFERAAVLRDQIRAVE 233 (694)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999998765
No 12
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=82.49 E-value=1.5 Score=50.84 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus 197 ~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 231 (567)
T PRK14667 197 VKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALE 231 (567)
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 35688899999999999999999999999998765
No 13
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=82.46 E-value=1.6 Score=50.81 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 128 ERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 128 e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
..+...|+.+|+.|+++.+||.||+||+.|.++.
T Consensus 201 ~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~ 234 (598)
T PRK00558 201 DEVLKELEEKMEEASENLEFERAARYRDQIQALR 234 (598)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 4588889999999999999999999999998765
No 14
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=81.23 E-value=1.8 Score=50.24 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus 192 ~~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 226 (574)
T TIGR00194 192 PQEVIKELEQKMEKASENLEFEEAARIRDQIAAVR 226 (574)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 36788889999999999999999999999998765
No 15
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=81.15 E-value=1.8 Score=50.23 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
...++..|+.+|+.|.++.+||.||++|+.|.++.
T Consensus 175 ~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~ 209 (574)
T PRK14670 175 ISKLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI 209 (574)
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999998875
No 16
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=80.70 E-value=2 Score=50.97 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus 203 ~~~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~ 237 (691)
T PRK14672 203 IDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR 237 (691)
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45688888999999999999999999999998765
No 17
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=80.18 E-value=2.1 Score=50.18 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
...+...|+.+|+.|.++.+||.||++|+.|.++.
T Consensus 201 ~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 235 (624)
T PRK14669 201 HSDLARSLRARMEAAALEMQFELAAKYRDLITTVE 235 (624)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999998765
No 18
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=78.19 E-value=2.7 Score=48.93 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=33.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhc
Q 005662 124 VDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAAT 162 (685)
Q Consensus 124 Ve~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~ 162 (685)
-.+.+.+...|+.||..|++.-+|+.||+||+.|.++..
T Consensus 619 ~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~ 657 (663)
T COG0556 619 KKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKE 657 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345566778899999999999999999999999988764
No 19
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=74.74 E-value=3.7 Score=47.92 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHh
Q 005662 128 ERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAA 161 (685)
Q Consensus 128 e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~ 161 (685)
+.++..|+.+|+.|.+..|||.||+||+.|.++.
T Consensus 201 ~~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~ 234 (581)
T COG0322 201 DAVLQELEEKMEEASENLDFERAARLRDQIKALE 234 (581)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999876
No 20
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=70.54 E-value=2.3 Score=48.06 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=6.5
Q ss_pred HHHhhhccCCCCCCc
Q 005662 513 LSLSQAQNHQPLSGS 527 (685)
Q Consensus 513 l~~~~~~~~~~l~~~ 527 (685)
|+.-...+|.++++-
T Consensus 214 le~Rr~~K~~~iPQD 228 (458)
T PF10446_consen 214 LEARRREKHIPIPQD 228 (458)
T ss_pred HHHHHHcCCCCCCCC
Confidence 333333445555443
No 21
>PRK07883 hypothetical protein; Validated
Probab=65.61 E-value=5.2 Score=46.14 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=39.1
Q ss_pred HhhccchhHHHHHHHHHHHHh--cCChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 141 AVFKEEYDDAARLKVAIAAAA--TNDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 141 AV~~EDYeeAARLK~ai~a~~--~~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
.+..|+|. ..++.++.-+. .++.+-.+...|++|-++.+||.||+|||.
T Consensus 383 ~~~~~~Y~--~~v~~~~~fL~G~~~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~ 433 (557)
T PRK07883 383 RESAAEYA--EAVARARAALTGDDDAVLAALRARIDRLAAAERFEEAARLRDR 433 (557)
T ss_pred CCCHHHHH--HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 56678885 45556666554 455788999999999999999999999996
No 22
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=65.39 E-value=5.3 Score=47.56 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=40.5
Q ss_pred hhccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 142 VFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 142 V~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
+..|+|.+..+--..+-.-..++.+-.+...|++|.++.+||.||+|||.
T Consensus 179 is~e~Y~~~V~~v~~fL~G~~~~l~~~L~~~M~~AAe~l~FE~AA~lRD~ 228 (694)
T PRK14666 179 VPRETYAALVRKVEMLLSGRSGELVDALRTEMEAASEALEFERAAVLRDQ 228 (694)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66788877665555554445567889999999999999999999999996
No 23
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=64.38 E-value=6 Score=45.58 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=39.2
Q ss_pred HhhccchhHHHHHHHHHHHHhc--CChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 141 AVFKEEYDDAARLKVAIAAAAT--NDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 141 AV~~EDYeeAARLK~ai~a~~~--~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
.+..|+|. .+++.++.-+.+ ++.+..+...|++|-++.+||.||+|||.
T Consensus 169 ~~s~e~Y~--~~v~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~ 219 (519)
T PRK12306 169 NISSDEYL--EQVKKAEEVLKGKIDELIEKLEEEMAEKAKNQQFERALVIRDE 219 (519)
T ss_pred CCCHHHHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45568886 455556665554 57888999999999999999999999996
No 24
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=64.32 E-value=4.1 Score=48.39 Aligned_cols=119 Identities=18% Similarity=0.282 Sum_probs=74.4
Q ss_pred cchhhHHHHHH-------HHHHHHHHHHHhhhcCCCCchhh----hhhhh-ccCCCCChhhHHHHHhhhhhhhhhhHHHH
Q 005662 65 NRRWDLVIQDA-------FKNAVKLFDSFLKEYGAPQDDAV----LEEEK-RDESGEDEWDWDRWKSHFDEVDDQERLVS 132 (685)
Q Consensus 65 ~~rW~~~f~d~-------~~~a~~~~~sy~s~~~~~~~~Av----~eee~-~~~~~~~~wdW~RWkrhF~eVe~~e~la~ 132 (685)
-.+|-.++-|+ +..-.+.+..|+..++...-.|. -.+++ -++ .--+.-+|..+|.-.|..-.++.
T Consensus 728 d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVq---lHve~~~W~eAFalAe~hPe~~~ 804 (1081)
T KOG1538|consen 728 DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQ---LHVETQRWDEAFALAEKHPEFKD 804 (1081)
T ss_pred cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhh---heeecccchHhHhhhhhCccccc
Confidence 45687776654 34456678888888876655443 11110 011 11234578899999988777665
Q ss_pred HHHHHHHH-HhhccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhhhHHHHh
Q 005662 133 ILKSQLGN-AVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALL 188 (685)
Q Consensus 133 ~Lk~QLe~-AV~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY~DAA~l 188 (685)
..--|-.. -++..+|+||.+- -++|-+....+-.+..+-++||.|+||.||+++
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkA--fhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~y~ 859 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKA--FHKAGRQREAVQVLEQLTNNAVAESRFNDAAYY 859 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHH--HHHhcchHHHHHHHHHhhhhhhhhhhhccchhH
Confidence 54444322 3467789999753 334444455555555566899999999999986
No 25
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=64.09 E-value=5.5 Score=46.44 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=38.9
Q ss_pred hhccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 142 VFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 142 V~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
+..|+|.+...--..+-.-..++.+..+...|++|-++.+||.||+|||.
T Consensus 155 ~~~e~Y~~~v~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~ 204 (574)
T PRK14670 155 DLEKEYQKEVDKIKHILNGNISKLLSQIEIKMKEAIQKEDFEAAIKLKET 204 (574)
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55678876554443333445567899999999999999999999999996
No 26
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=64.00 E-value=5.6 Score=46.78 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=40.1
Q ss_pred HhhccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 141 AVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 141 AV~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
.+..|+|.+...--..+-.-..++.+..+...|++|-++.+|+.||+|||.
T Consensus 180 ~i~~e~Y~~~v~~v~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~ 230 (624)
T PRK14669 180 LTTDEAYAEAVRDVRLFLEGRHSDLARSLRARMEAAALEMQFELAAKYRDL 230 (624)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456688877655444444445567888999999999999999999999996
No 27
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=63.19 E-value=6.1 Score=45.97 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=38.5
Q ss_pred HhhccchhHHHHHHHHHHHHh--cCChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 141 AVFKEEYDDAARLKVAIAAAA--TNDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 141 AV~~EDYeeAARLK~ai~a~~--~~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
.+..|+|.+ ++..++.-+. .++.+..+...|++|-++.+|+.||+|||.
T Consensus 171 ~~s~e~Y~~--~v~~~~~fL~g~~~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~ 221 (574)
T TIGR00194 171 EITEEEYQQ--IVEKIELFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQ 221 (574)
T ss_pred CCCHHHHHH--HHHHHHHHHCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 355688854 4555555554 457888999999999999999999999996
No 28
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=63.09 E-value=6 Score=46.12 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=38.9
Q ss_pred hhccchhHHHHHHHHHHHHhc--CChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 142 VFKEEYDDAARLKVAIAAAAT--NDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 142 V~~EDYeeAARLK~ai~a~~~--~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
+..|+|.+ +++.++.-+.+ .+.+-.+...|+.|.++.+|+.||+|||.
T Consensus 180 ~~~e~Y~~--~v~~~~~fL~G~~~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~ 229 (598)
T PRK00558 180 ISKEEYAE--LVDEAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQ 229 (598)
T ss_pred CCHHHHHH--HHHHHHHHhcCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 56788855 55666665544 56788999999999999999999999996
No 29
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=62.74 E-value=6.5 Score=46.18 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=39.5
Q ss_pred HhhccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 141 AVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 141 AV~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
.+..|+|.+...--..+-.-..++.+..+...|++|-++.+||.||+|||.
T Consensus 192 ~~s~e~Y~~~v~~~~~fL~G~~~~l~~~L~~~M~~as~~l~FE~Aa~~RD~ 242 (621)
T PRK14671 192 LQSEEDYLEMIEEIVRLLKGKTSALIRSLTEEMQRAAAELKFEEAAELKDQ 242 (621)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 356688866544444444445567899999999999999999999999996
No 30
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=61.93 E-value=6.6 Score=45.70 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=38.1
Q ss_pred hhccchhHHHHHHHHHHHHhc--CChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 142 VFKEEYDDAARLKVAIAAAAT--NDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 142 V~~EDYeeAARLK~ai~a~~~--~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
+..|+|.+ +++.++.-+.+ ++.+..+...|++|-++.+||.||+|||.
T Consensus 177 ~s~e~Y~~--~v~~~~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~ 226 (567)
T PRK14667 177 ISKEDYEL--SVKSAKAFLSGNVKEVLPELYDKIEEYSQKLMFEKAAVIRDQ 226 (567)
T ss_pred CCHHHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45677854 45555555544 56788899999999999999999999997
No 31
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=59.80 E-value=7.9 Score=45.15 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=36.8
Q ss_pred hhccchhHHHHHHHHHHHHhc--CChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 142 VFKEEYDDAARLKVAIAAAAT--NDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 142 V~~EDYeeAARLK~ai~a~~~--~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
+..|+|.+. ++.++.-+.+ ++.+..+...|++|-++.+||.||+|||.
T Consensus 177 ~s~e~Y~~~--v~~~~~fL~G~~~~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~ 226 (577)
T PRK14668 177 IDEEAYAED--VESAERFFEGETGVLADPLRREMEAAAQAQEFERAANLRDR 226 (577)
T ss_pred CCHHHHHHH--HHHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 556777654 4444444544 46778899999999999999999999996
No 32
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=59.62 E-value=9.6 Score=38.57 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 168 RVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 168 rim~~L~~AI~EERY~DAA~lRD~ 191 (685)
++...|+.+|+.|.|+.||-+||.
T Consensus 140 ~L~e~Lq~~i~~EefEeAA~iRDq 163 (176)
T COG3880 140 ALKEALQDLIEREEFEEAAVIRDQ 163 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999996
No 33
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=57.68 E-value=8.3 Score=45.98 Aligned_cols=50 Identities=28% Similarity=0.392 Sum_probs=38.1
Q ss_pred hhccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 142 VFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 142 V~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
+..|+|.+..+--..+-.-..++.+..+...|++|-++.+||.||+|||.
T Consensus 183 is~e~Y~~~V~~v~~fL~G~~~~ll~~L~~~M~~AA~~l~FE~AA~lRD~ 232 (691)
T PRK14672 183 VSPRTYQKDIHEITLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDD 232 (691)
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45577766544333343444567788999999999999999999999996
No 34
>PF05235 CHAD: CHAD domain; InterPro: IPR007899 The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family IPR008172 from INTERPRO. It has conserved histidines that may chelate metals [].; PDB: 3E0S_B.
Probab=55.89 E-value=91 Score=30.96 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhccCCCCChhhHHHHHhhhhhhhhhhHHHHHHHH
Q 005662 70 LVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHFDEVDDQERLVSILKS 136 (685)
Q Consensus 70 ~~f~d~~~~a~~~~~sy~s~~~~~~~~Av~eee~~~~~~~~~wdW~RWkrhF~eVe~~e~la~~Lk~ 136 (685)
..+|++ ..|+||+-+.+..+++..+......- ...+..+-+.+..+.+.+.+...|..
T Consensus 24 E~lHql-RvalRRlRa~l~l~~~~~~~~~~~~l--------~~~lk~l~~~lg~~RD~dV~~~~l~~ 81 (231)
T PF05235_consen 24 EALHQL-RVALRRLRALLRLFRPLLPPEALKKL--------RRELKWLARALGPLRDLDVLLETLDP 81 (231)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTTTSS-HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHTHH-
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHcCchhhHHH--------HHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 379999 88999999999999998864443322 46788888899999999888888773
No 35
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=46.56 E-value=15 Score=42.99 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=36.7
Q ss_pred HhhccchhHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 141 AVFKEEYDDAARLKVAIAAAATN--DAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 141 AV~~EDYeeAARLK~ai~a~~~~--DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
.|..|+|+++.. .+..-+.++ -.+..+...|+.|-.+.+|+.||+|||.
T Consensus 179 ~is~e~Y~e~v~--~~~~fL~G~~~~v~~~L~~~M~~As~~l~FE~Aa~~RD~ 229 (581)
T COG0322 179 LISEEEYREIVE--EVKGFLKGKDDAVLQELEEKMEEASENLDFERAARLRDQ 229 (581)
T ss_pred cCCHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 477788877654 333334443 4567888899999999999999999995
No 36
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=37.95 E-value=92 Score=36.83 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.5
Q ss_pred hcCChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 161 ATNDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 161 ~~~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
..+.-+-.+..+|+.|.++.+|+.||+|||.
T Consensus 610 ~~~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~ 640 (652)
T PRK05298 610 ELEKLIKELEKQMKEAAKNLEFEEAARLRDE 640 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3345667788899999999999999999996
No 37
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=37.26 E-value=1.2e+02 Score=23.86 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=37.0
Q ss_pred HhhccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 141 AVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 141 AV~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
+++.++|++|.++-..+-...-+++-.++ ..-+-.+...+|++|..+-..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARL-LLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHH-HHHHHHHHTT-HHHHHHHHHC
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHH
Confidence 46788999999888888777777666555 566667888899998877654
No 38
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=37.18 E-value=43 Score=38.80 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=43.8
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 134 LKSQLGNAVFKEEYDDAARLKVAIAAAAT-NDAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 134 Lk~QLe~AV~~EDYeeAARLK~ai~a~~~-~DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
|...-+.||.+|||.-|-++|.||+.+.. -.-.+++-..=.-|++.|.|+-|--+.|+
T Consensus 176 idenKqeAVakEdfdlAKkaklAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkde 234 (666)
T KOG4825|consen 176 IDENKQEAVAKEDFDLAKKAKLAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDE 234 (666)
T ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHH
Confidence 34455689999999999999999997663 22334444444469999999999888876
No 39
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=34.43 E-value=25 Score=40.49 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=37.1
Q ss_pred CCCCCceEeeccCC--CCceEEEEEeecCCcCCCCCCCCCCCcccceEEEEEEeeCCCCCCCcee
Q 005662 539 QDALNGLYIGVHGL--RTSEVINLRRKFGQWQDDGGIKNPSNLEFYEYVEAIKVTGDPYVPAGQV 601 (685)
Q Consensus 539 ~~P~~GIwVGdYg~--HG~EfL~l~q~~g~~~~d~~~~~~~~~~~~~~LEAVKLTGDpNVPrGev 601 (685)
-|||--+=-|+++| ||-=|++ . | |-+-+-|+--|+|--.|+||+|.|++-|.+
T Consensus 39 IDPYlN~DAGTmSPyEHGEVfVL-D--------D-GgEvDLDLGNYERfldi~Lt~dNNITtGKi 93 (585)
T KOG2387|consen 39 IDPYLNIDAGTMSPYEHGEVFVL-D--------D-GGEVDLDLGNYERFLDITLTRDNNITTGKI 93 (585)
T ss_pred eccceeccCcccCccccceEEEe-c--------C-CceecccccchhhhccceeeccCCcccchH
Confidence 57888888888887 6643332 1 2 222223455578889999999999999976
No 40
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=33.18 E-value=1.6e+02 Score=24.95 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhhhHHHHh
Q 005662 145 EEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALL 188 (685)
Q Consensus 145 EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY~DAA~l 188 (685)
++......|+..+.... -.++..|..+++...|+.|+.+
T Consensus 24 ~~~~~L~~l~~~~~~~~-----~~~~~~l~~~f~~~d~~~A~~~ 62 (78)
T PF07743_consen 24 DDEAELEELKKEIEERI-----KELIKELAEAFDAKDWEEAKEA 62 (78)
T ss_dssp TSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-----HHHHHHHHHHHccCcHHHHHHH
Confidence 33344444444444433 5566667777777777776654
No 41
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.98 E-value=23 Score=43.86 Aligned_cols=11 Identities=18% Similarity=-0.010 Sum_probs=5.6
Q ss_pred eEEEEeecCCC
Q 005662 339 RVKVLKVTAPG 349 (685)
Q Consensus 339 KvKVlkV~~~~ 349 (685)
+=.-|.|+.++
T Consensus 1370 ~D~~l~vIe~~ 1380 (1516)
T KOG1832|consen 1370 TDSFLGVIEME 1380 (1516)
T ss_pred ccceEEEEecc
Confidence 33355666554
No 42
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.97 E-value=21 Score=44.08 Aligned_cols=8 Identities=25% Similarity=0.318 Sum_probs=3.5
Q ss_pred eEEecccc
Q 005662 207 VKEIGPYY 214 (685)
Q Consensus 207 IirIsp~~ 214 (685)
|.+|-|..
T Consensus 1146 vT~vePs~ 1153 (1516)
T KOG1832|consen 1146 VTLVEPSV 1153 (1516)
T ss_pred cccccccC
Confidence 34444444
No 43
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=29.95 E-value=23 Score=42.45 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.4
Q ss_pred hHHHhh
Q 005662 489 DLAKFI 494 (685)
Q Consensus 489 d~~k~~ 494 (685)
-+++.+
T Consensus 740 ~La~~F 745 (784)
T PF04931_consen 740 QLAAIF 745 (784)
T ss_pred HHHHHH
Confidence 344433
No 44
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=29.60 E-value=50 Score=31.02 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=31.1
Q ss_pred hhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhccchhHHHH
Q 005662 111 EWDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAAR 152 (685)
Q Consensus 111 ~wdW~RWkrhF~eVe~~e~la~~Lk~QLe~AV~~EDYeeAAR 152 (685)
-+||.+|.+.+......+ ++..++.-....=..+|++.|++
T Consensus 70 ~~dW~~~~~~~~~~~~~~-~~~~~~~~~~~~Pt~~Dl~gA~~ 110 (134)
T PF08336_consen 70 HQDWPKWEKLMEQPVGQE-QLQNLQELRSKLPTEEDLEGAAE 110 (134)
T ss_pred HHhhhhHHHHHHHhhhHH-HHHHHHHHHhcCCCHHHHHHHHH
Confidence 479999999988886666 55555666556668899999875
No 45
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.47 E-value=1e+02 Score=36.80 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhhhHHHHhhhhcCCCccc-cc
Q 005662 131 VSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERYEDAALLRDNAGAGLEN-GG 200 (685)
Q Consensus 131 a~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY~DAA~lRD~aGaGLvG-~G 200 (685)
+..|-.+|..+...++|++|.+-...|-... .|+...+..-+=.-|..++|+||-++-...|+=+++ ++
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~ 81 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF 81 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh
Confidence 3556788999999999999999988888777 777788888899999999999999988877776665 55
No 46
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=29.12 E-value=79 Score=36.81 Aligned_cols=130 Identities=22% Similarity=0.164 Sum_probs=78.5
Q ss_pred CCchhhhhhhhccCCCCChhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhcCChHHHHHHH
Q 005662 93 PQDDAVLEEEKRDESGEDEWDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSN 172 (685)
Q Consensus 93 ~~~~Av~eee~~~~~~~~~wdW~RWkrhF~eVe~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~~DpVgrim~~ 172 (685)
..-.||-.|+ +-=+.+.|.++.+.--.-.=+..|...-..||+.|||+-|--+|+.|.+.++ .|..+
T Consensus 179 nKqeAVakEd--------fdlAKkaklAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkdeiealRa-----eilaq 245 (666)
T KOG4825|consen 179 NKQEAVAKED--------FDLAKKAKLAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDEIEALRA-----EILAQ 245 (666)
T ss_pred hHHHHHhhhh--------hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHH-----HHHHh
Confidence 3345666555 6667778888877766555566667788889999999999999999998884 33333
Q ss_pred HHHHHhhhhhhHHHHhhhhcCCCccccccCCccceEEeccccccCCCCcccccccccccChHHHhhhcCCCceEEEEEEe
Q 005662 173 LNRAVVQERYEDAALLRDNAGAGLENGGIDIGNLVKEIGPYYRNGSGGFCWKKHFMACYYKEQLATAAAGVPLFEIFLTV 252 (685)
Q Consensus 173 L~~AI~EERY~DAA~lRD~aGaGLvG~G~Dp~G~IirIsp~~~~~~GR~~~~~~Va~sYspRQLata~aG~PlFEIfl~k 252 (685)
| +=--.+||--+|..+-.-+ ||-- .+ |--|- ---+-|.|||.+-..-.-.-|.|+.
T Consensus 246 l----dlhlLeDaelhlrPfdlpa-----dPla-------af----glPch---pkpmpSlpqleepgrenqfaepflq- 301 (666)
T KOG4825|consen 246 L----DLHLLEDAELHLRPFDLPA-----DPLA-------AF----GLPCH---PKPMPSLPQLEEPGRENQFAEPFLQ- 301 (666)
T ss_pred c----ChhhhhhhHhhcCcccCCC-----Chhh-------hc----CCCCC---CCCCCccccccCCCCccccccchhh-
Confidence 3 2223456666665432222 3321 11 22222 2245677888875444445566655
Q ss_pred ecCCcee
Q 005662 253 NKKGEYQ 259 (685)
Q Consensus 253 d~~g~Y~ 259 (685)
.+-..|.
T Consensus 302 ekpsswe 308 (666)
T KOG4825|consen 302 EKPSSWE 308 (666)
T ss_pred cCCCcce
Confidence 3344443
No 47
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=29.00 E-value=2e+02 Score=31.46 Aligned_cols=81 Identities=25% Similarity=0.156 Sum_probs=56.4
Q ss_pred CCChhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhcCChHHHHHHHHHH-HHhhhhhhHHH
Q 005662 108 GEDEWDWDRWKSHFDEVDDQERLVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNR-AVVQERYEDAA 186 (685)
Q Consensus 108 ~~~~wdW~RWkrhF~eVe~~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~-AI~EERY~DAA 186 (685)
....-+|+|.+++...++...++| -+.+|..|..|.=.+-+..=.=|..-+...|+. |
T Consensus 173 ~~~~vdv~~~r~~a~~~e~A~~lA-----------~~G~~~~Am~lNG~~y~~aLG~~~e~~~~ale~GA---------- 231 (278)
T COG1685 173 LSANVDVNRLRLIAPVVEEAFRLA-----------LKGEYFKAMVLNGILYCSALGYDLEPALKALEAGA---------- 231 (278)
T ss_pred ccccCCHHHHHHhhHHHHHHHHHH-----------hcccHHHHHHHhHHHHHHHhCCChHHHHHHHhccc----------
Confidence 356889999999999999887765 357899999998766544433333445555553 2
Q ss_pred HhhhhcCCCccc-----ccc--CC---------ccceEEecccc
Q 005662 187 LLRDNAGAGLEN-----GGI--DI---------GNLVKEIGPYY 214 (685)
Q Consensus 187 ~lRD~aGaGLvG-----~G~--Dp---------~G~IirIsp~~ 214 (685)
+++||.| +++ || ||.++-+++.-
T Consensus 232 -----~~aglSGtGPa~~Al~~~~~~v~ea~~~~G~V~~t~~~~ 270 (278)
T COG1685 232 -----AAAGLSGTGPAYFALTEDPEEVAEAWSKIGDVIETRNVG 270 (278)
T ss_pred -----ceeccCCCCCceEEEecCcHHHHHHHHhCCeEEEEecCC
Confidence 4667777 333 44 78888888766
No 48
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=28.36 E-value=9.5e+02 Score=27.57 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=51.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhcCCCCchhhhhhhhccCCCCChhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 005662 65 NRRWDLVIQDAFKNAVKLFDSFLKEYGAPQDDAVLEEEKRDESGEDEWDWDRWKSHFDEVDDQERLVSILKSQLGNAV 142 (685)
Q Consensus 65 ~~rW~~~f~d~~~~a~~~~~sy~s~~~~~~~~Av~eee~~~~~~~~~wdW~RWkrhF~eVe~~e~la~~Lk~QLe~AV 142 (685)
-.+=+..|.+.++.|++-+...+..+..+..+.-..-....+ -...--.+||.-...-...-.+...|+..|...-
T Consensus 297 ed~idekl~~~L~~at~~a~~vlp~l~~~~~~~~~~a~~~~~--~~~~~~~k~k~L~~~C~~~~~~T~~L~~rLs~ik 372 (445)
T PF10428_consen 297 EDRIDEKLYLALQNATDLALHVLPQLTSQFSKSARAAAQQRA--IPPSLVQKWKELISKCNSAIDQTERLKSRLSTIK 372 (445)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888889998888888887666544432220000 1244556888888888888888888888887655
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.02 E-value=35 Score=36.82 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.3
Q ss_pred CCCCCceEeeccCCCCceEEEEEeec
Q 005662 539 QDALNGLYIGVHGLRTSEVINLRRKF 564 (685)
Q Consensus 539 ~~P~~GIwVGdYg~HG~EfL~l~q~~ 564 (685)
=+|++|+-+-+|++||-|+|-+.-.+
T Consensus 44 WNp~rg~liktYsghG~EVlD~~~s~ 69 (307)
T KOG0316|consen 44 WNPLRGALIKTYSGHGHEVLDAALSS 69 (307)
T ss_pred ecccccceeeeecCCCceeeeccccc
Confidence 36999999999999999999776553
No 50
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=26.77 E-value=46 Score=30.30 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=24.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhccc
Q 005662 120 HFDEVDDQERLVSILKSQLGNAVFKEE 146 (685)
Q Consensus 120 hF~eVe~~e~la~~Lk~QLe~AV~~ED 146 (685)
.|++.++..+|++..+.-|..||++|+
T Consensus 59 vF~D~EqR~~vL~a~Q~alD~aI~~E~ 85 (87)
T PF09059_consen 59 VFNDEEQRQNVLDAVQEALDQAIEREE 85 (87)
T ss_dssp GSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999999999986
No 51
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=26.75 E-value=66 Score=31.67 Aligned_cols=51 Identities=25% Similarity=0.386 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhhh
Q 005662 130 LVSILKSQLGNAVFKEEYDDAARLKVAIAAAATNDAVGRVMSNLNRAVVQERY 182 (685)
Q Consensus 130 la~~Lk~QLe~AV~~EDYeeAARLK~ai~a~~~~DpVgrim~~L~~AI~EERY 182 (685)
+..- +.+|-.|++..||+.|..|-..|.. ..-|-+|.=|..+|+-|.+=|=
T Consensus 90 v~~~-L~~L~~aL~~~d~~~A~~Ih~~L~t-~h~~E~~~WmvGVKRLI~~~r~ 140 (157)
T PF07304_consen 90 VVDK-LHQLAQALQARDYDAADEIHVDLMT-DHVDECGNWMVGVKRLIAMARN 140 (157)
T ss_dssp HHHH-HHHHHHHHHHT-HHHHHHHHHHHHH-SSHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHcCCHHHHHHHHHHHHh-ccHHHhhhHHHHHHHHHHHHHh
Confidence 4444 6889999999999999999999984 5567888889999998887653
No 52
>PLN02673 quinolinate synthetase A
Probab=26.64 E-value=1.6e+02 Score=35.76 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=8.6
Q ss_pred HHHhhhcCCCceEEEE
Q 005662 234 EQLATAAAGVPLFEIF 249 (685)
Q Consensus 234 RQLata~aG~PlFEIf 249 (685)
|+|+...+|.|-||-|
T Consensus 213 r~lv~e~~g~~~~~pf 228 (724)
T PLN02673 213 RRLVAEREGKPSFDPF 228 (724)
T ss_pred HHHHHHhcCCCCCCCC
Confidence 3445555666555554
No 53
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=25.96 E-value=31 Score=37.30 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=3.4
Q ss_pred cCCCccc
Q 005662 192 AGAGLEN 198 (685)
Q Consensus 192 aGaGLvG 198 (685)
+|.||||
T Consensus 91 tGl~mvG 97 (314)
T PF06524_consen 91 TGLGMVG 97 (314)
T ss_pred cccchhh
Confidence 3445554
No 54
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=25.66 E-value=1.3e+02 Score=27.64 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHhhccchhHHHHHHHHHH--------------HHhcCChHHHHHHHHHHHHhhhhhhHHH
Q 005662 127 QERLVSILKSQLGNAVFKEEYDDAARLKVAIA--------------AAATNDAVGRVMSNLNRAVVQERYEDAA 186 (685)
Q Consensus 127 ~e~la~~Lk~QLe~AV~~EDYeeAARLK~ai~--------------a~~~~DpVgrim~~L~~AI~EERY~DAA 186 (685)
.+.+-.. =.+++.+|.+||+++|.+.-..+. .-..-|-+..-+..|+.+|+.+...+|.
T Consensus 25 ~~~i~~~-l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l 97 (121)
T PF14276_consen 25 TDSIEEQ-LEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESL 97 (121)
T ss_pred HHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3444444 467889999999999999888877 3344466788888999999888766653
No 55
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=25.35 E-value=50 Score=42.33 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=14.0
Q ss_pred eEEEEEEeeCCCCCCCcee
Q 005662 583 EYVEAIKVTGDPYVPAGQV 601 (685)
Q Consensus 583 ~~LEAVKLTGDpNVPrGev 601 (685)
.+.-|+--.||+|-|+-++
T Consensus 2041 Rp~mal~saaDd~ak~~~L 2059 (3015)
T KOG0943|consen 2041 RPGMALASAADDGAKNHPL 2059 (3015)
T ss_pred CcchheecccCCCCCCCcc
Confidence 4566777788888888665
No 56
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=23.45 E-value=1.7e+02 Score=29.12 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhhhhHHHH
Q 005662 168 RVMSNLNRAVVQERYEDAAL 187 (685)
Q Consensus 168 rim~~L~~AI~EERY~DAA~ 187 (685)
.+...|.++++...|+.|+.
T Consensus 128 ~~~~~l~~~~~~~d~~~A~~ 147 (171)
T PRK05014 128 TRLQQMVEQLDNEAWDAAAD 147 (171)
T ss_pred HHHHHHHHHHhhCCHHHHHH
Confidence 33444444555555544443
No 57
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=22.08 E-value=70 Score=38.02 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHhhhhhhHHHHhhhh
Q 005662 164 DAVGRVMSNLNRAVVQERYEDAALLRDN 191 (685)
Q Consensus 164 DpVgrim~~L~~AI~EERY~DAA~lRD~ 191 (685)
+-+-.+..+|++|.++.+|+.||.|||.
T Consensus 623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~ 650 (655)
T TIGR00631 623 KLIKQLEKEMKQAARNLEFEEAARLRDE 650 (655)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3455677889999999999999999996
Done!