Query 005663
Match_columns 684
No_of_seqs 420 out of 3531
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 11:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 5.7E-70 1.2E-74 579.4 36.5 445 207-660 78-558 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 5.6E-68 1.2E-72 547.7 27.8 345 263-634 47-391 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 1.8E-51 4E-56 451.7 32.0 343 265-633 59-401 (412)
4 TIGR00382 clpX endopeptidase C 100.0 6.3E-51 1.4E-55 446.0 32.1 345 264-634 64-408 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 6.2E-43 1.3E-47 379.6 24.7 285 266-632 1-425 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 1.1E-42 2.4E-47 377.8 24.9 287 265-633 3-428 (443)
7 COG0542 clpA ATP-binding subun 100.0 2E-37 4.3E-42 356.5 22.0 279 254-612 464-760 (786)
8 COG1220 HslU ATP-dependent pro 100.0 2.3E-36 5E-41 315.1 22.5 287 265-633 3-429 (444)
9 PRK11034 clpA ATP-dependent Cl 100.0 1.2E-31 2.5E-36 313.6 23.8 275 254-611 431-720 (758)
10 CHL00095 clpC Clp protease ATP 100.0 2.2E-30 4.9E-35 307.5 27.2 288 254-612 482-787 (821)
11 TIGR02639 ClpA ATP-dependent C 100.0 3.8E-30 8.2E-35 302.3 24.1 276 254-612 427-717 (731)
12 TIGR03345 VI_ClpV1 type VI sec 100.0 2.8E-29 6E-34 298.0 24.5 279 254-611 539-835 (852)
13 TIGR03346 chaperone_ClpB ATP-d 100.0 1.2E-27 2.5E-32 285.3 26.0 275 254-611 538-830 (852)
14 PRK10865 protein disaggregatio 100.0 1.3E-27 2.9E-32 284.3 24.5 275 254-611 541-833 (857)
15 COG3829 RocR Transcriptional r 99.9 4.7E-26 1E-30 251.6 17.1 278 278-671 246-536 (560)
16 KOG1051 Chaperone HSP104 and r 99.9 2.6E-25 5.6E-30 259.5 22.5 286 253-611 534-838 (898)
17 COG3604 FhlA Transcriptional r 99.9 6.9E-25 1.5E-29 239.7 15.8 282 278-671 224-522 (550)
18 COG0466 Lon ATP-dependent Lon 99.9 4.3E-24 9.3E-29 241.1 19.3 247 264-613 310-564 (782)
19 COG2204 AtoC Response regulato 99.9 2.5E-24 5.4E-29 237.8 13.6 285 276-671 140-433 (464)
20 KOG2004 Mitochondrial ATP-depe 99.9 1.3E-23 2.8E-28 235.9 19.2 247 264-613 398-652 (906)
21 TIGR02880 cbbX_cfxQ probable R 99.9 7.7E-23 1.7E-27 215.8 19.6 239 264-613 9-260 (284)
22 PRK10787 DNA-binding ATP-depen 99.9 4.1E-22 9E-27 235.0 24.7 258 264-629 309-574 (784)
23 CHL00181 cbbX CbbX; Provisiona 99.9 2.3E-22 5.1E-27 212.4 20.0 238 265-613 11-261 (287)
24 TIGR00763 lon ATP-dependent pr 99.9 4.8E-22 1E-26 235.3 23.4 255 255-612 295-560 (775)
25 PF07724 AAA_2: AAA domain (Cd 99.9 2.6E-23 5.6E-28 204.1 9.9 166 329-534 2-171 (171)
26 KOG0730 AAA+-type ATPase [Post 99.9 2E-22 4.3E-27 225.9 16.0 220 278-611 435-657 (693)
27 COG1222 RPT1 ATP-dependent 26S 99.9 3.8E-22 8.3E-27 211.1 16.4 220 279-609 153-375 (406)
28 TIGR02881 spore_V_K stage V sp 99.9 3.7E-21 7.9E-26 200.2 22.5 229 273-613 3-245 (261)
29 COG1223 Predicted ATPase (AAA+ 99.9 9.8E-22 2.1E-26 200.1 13.7 215 278-609 122-338 (368)
30 KOG0736 Peroxisome assembly fa 99.9 1.5E-21 3.3E-26 220.8 16.0 246 278-633 673-928 (953)
31 KOG0738 AAA+-type ATPase [Post 99.9 2.5E-21 5.4E-26 206.1 14.9 220 278-610 213-436 (491)
32 PF05496 RuvB_N: Holliday junc 99.9 4E-20 8.7E-25 187.2 20.1 201 275-601 23-224 (233)
33 KOG0733 Nuclear AAA ATPase (VC 99.8 3.8E-20 8.3E-25 205.3 17.8 221 279-609 513-736 (802)
34 KOG0731 AAA+-type ATPase conta 99.8 9.8E-20 2.1E-24 209.5 19.4 221 278-608 312-535 (774)
35 PRK05022 anaerobic nitric oxid 99.8 1.3E-19 2.7E-24 205.6 18.9 280 278-671 188-484 (509)
36 TIGR02974 phageshock_pspF psp 99.8 4.7E-20 1E-24 198.5 14.3 283 279-671 1-308 (329)
37 KOG0734 AAA+-type ATPase conta 99.8 1.7E-19 3.7E-24 197.6 16.1 232 266-611 293-526 (752)
38 KOG0739 AAA+-type ATPase [Post 99.8 1.9E-19 4.1E-24 186.3 12.0 127 278-435 134-262 (439)
39 PRK15424 propionate catabolism 99.8 5.3E-19 1.2E-23 200.7 15.9 219 279-605 221-464 (538)
40 TIGR02329 propionate_PrpR prop 99.8 9.4E-19 2E-23 198.6 16.7 274 279-672 214-507 (526)
41 PRK11388 DNA-binding transcrip 99.8 2.3E-18 4.9E-23 200.3 19.5 270 278-671 326-607 (638)
42 TIGR01817 nifA Nif-specific re 99.8 7.3E-19 1.6E-23 200.4 15.0 221 278-605 197-427 (534)
43 COG2255 RuvB Holliday junction 99.8 1.8E-18 3.8E-23 178.8 15.7 188 275-585 25-213 (332)
44 PRK11608 pspF phage shock prot 99.8 1.4E-18 3.1E-23 186.7 15.7 283 278-671 7-302 (326)
45 PRK10820 DNA-binding transcrip 99.8 2.1E-18 4.6E-23 196.1 17.2 270 278-667 205-486 (520)
46 CHL00195 ycf46 Ycf46; Provisio 99.8 6.1E-18 1.3E-22 190.3 19.2 216 279-609 230-447 (489)
47 COG1221 PspF Transcriptional r 99.8 1.7E-18 3.6E-23 188.9 14.1 224 274-608 75-311 (403)
48 KOG0733 Nuclear AAA ATPase (VC 99.8 2.7E-18 5.8E-23 190.9 15.8 222 279-610 192-415 (802)
49 COG0464 SpoVK ATPases of the A 99.8 1.2E-17 2.5E-22 188.8 18.3 220 279-610 244-466 (494)
50 TIGR01241 FtsH_fam ATP-depende 99.8 2.5E-17 5.3E-22 186.4 20.7 218 279-607 57-276 (495)
51 TIGR01243 CDC48 AAA family ATP 99.8 1.4E-17 3.1E-22 196.5 18.4 221 278-611 454-677 (733)
52 PTZ00454 26S protease regulato 99.7 2.8E-17 6.1E-22 181.0 18.5 221 279-609 147-369 (398)
53 KOG0728 26S proteasome regulat 99.7 8.4E-18 1.8E-22 170.7 11.6 212 278-602 148-364 (404)
54 TIGR02915 PEP_resp_reg putativ 99.7 2.1E-17 4.6E-22 183.5 15.9 248 331-671 163-421 (445)
55 PRK03992 proteasome-activating 99.7 3.9E-17 8.4E-22 179.6 17.6 221 278-609 132-355 (389)
56 PRK15429 formate hydrogenlyase 99.7 3.3E-17 7.2E-22 192.1 16.8 222 278-606 377-609 (686)
57 CHL00176 ftsH cell division pr 99.7 9.3E-17 2E-21 185.9 18.9 218 279-607 185-404 (638)
58 COG2256 MGS1 ATPase related to 99.7 3.8E-17 8.3E-22 175.7 14.5 170 331-604 49-218 (436)
59 COG3283 TyrR Transcriptional r 99.7 6.2E-17 1.3E-21 171.2 15.6 241 331-663 228-477 (511)
60 KOG0735 AAA+-type ATPase [Post 99.7 6.4E-17 1.4E-21 182.2 16.7 219 279-612 669-891 (952)
61 TIGR03689 pup_AAA proteasome A 99.7 1.3E-16 2.7E-21 179.9 19.1 183 279-553 184-378 (512)
62 PRK10923 glnG nitrogen regulat 99.7 4.8E-17 1E-21 182.0 15.4 199 331-606 162-371 (469)
63 PLN00020 ribulose bisphosphate 99.7 1.4E-16 3E-21 171.4 16.9 176 330-584 148-327 (413)
64 PRK15115 response regulator Gl 99.7 1.1E-16 2.5E-21 177.6 16.2 247 331-671 158-414 (444)
65 COG0465 HflB ATP-dependent Zn 99.7 1.5E-16 3.3E-21 180.5 17.0 174 278-551 151-331 (596)
66 PTZ00361 26 proteosome regulat 99.7 1.9E-16 4.1E-21 176.0 17.5 217 279-609 185-407 (438)
67 PRK11361 acetoacetate metaboli 99.7 1.5E-16 3.3E-21 176.9 16.0 250 331-671 167-433 (457)
68 KOG0727 26S proteasome regulat 99.7 1.4E-16 3E-21 162.1 12.9 144 279-469 157-303 (408)
69 TIGR02902 spore_lonB ATP-depen 99.7 5.5E-16 1.2E-20 176.8 17.8 215 279-608 67-314 (531)
70 TIGR01818 ntrC nitrogen regula 99.7 4.9E-16 1.1E-20 173.3 15.4 200 331-606 158-367 (463)
71 TIGR01242 26Sp45 26S proteasom 99.7 1.3E-15 2.9E-20 165.8 17.2 221 278-609 123-346 (364)
72 COG3284 AcoR Transcriptional a 99.6 3.1E-16 6.7E-21 176.7 10.4 194 331-604 337-538 (606)
73 KOG0737 AAA+-type ATPase [Post 99.6 1.1E-15 2.3E-20 163.1 13.4 225 279-614 94-319 (386)
74 PRK00080 ruvB Holliday junctio 99.6 1.3E-14 2.8E-19 155.9 21.6 203 279-606 27-230 (328)
75 KOG0729 26S proteasome regulat 99.6 2E-15 4.4E-20 154.6 13.3 213 278-601 178-393 (435)
76 TIGR00635 ruvB Holliday juncti 99.6 1.4E-14 3.1E-19 153.2 20.2 201 279-603 6-206 (305)
77 CHL00206 ycf2 Ycf2; Provisiona 99.6 2.8E-15 6E-20 183.7 16.6 189 329-609 1629-1860(2281)
78 PF00158 Sigma54_activat: Sigm 99.6 1.6E-15 3.6E-20 148.6 10.9 150 279-491 1-164 (168)
79 PRK14956 DNA polymerase III su 99.6 8.6E-15 1.9E-19 163.4 17.3 185 279-604 20-228 (484)
80 PRK10365 transcriptional regul 99.6 5.4E-15 1.2E-19 163.7 15.4 249 331-671 163-421 (441)
81 KOG0726 26S proteasome regulat 99.6 1.1E-15 2.3E-20 158.3 8.7 179 278-552 186-368 (440)
82 PRK13342 recombination factor 99.6 1.9E-14 4.1E-19 159.5 18.2 166 331-604 37-202 (413)
83 PRK10733 hflB ATP-dependent me 99.6 3.2E-14 7E-19 165.7 19.5 227 270-608 146-374 (644)
84 KOG0652 26S proteasome regulat 99.6 5.3E-15 1.2E-19 151.2 11.1 176 279-551 173-353 (424)
85 PRK14962 DNA polymerase III su 99.6 2.7E-14 5.9E-19 160.6 17.8 185 279-604 16-224 (472)
86 PRK07003 DNA polymerase III su 99.6 3E-14 6.4E-19 164.8 17.5 185 279-604 18-226 (830)
87 PLN03025 replication factor C 99.6 3.3E-14 7.1E-19 152.4 15.5 181 279-601 15-203 (319)
88 PRK13341 recombination factor 99.6 5E-14 1.1E-18 165.3 17.7 170 331-604 53-223 (725)
89 PRK14960 DNA polymerase III su 99.6 6E-14 1.3E-18 160.8 17.4 185 279-604 17-225 (702)
90 KOG0741 AAA+-type ATPase [Post 99.6 6.8E-15 1.5E-19 161.8 9.1 219 331-631 257-484 (744)
91 PRK14949 DNA polymerase III su 99.6 8.1E-14 1.8E-18 163.8 18.3 189 279-603 18-225 (944)
92 PRK12323 DNA polymerase III su 99.6 4.7E-14 1E-18 161.4 15.7 185 278-603 17-230 (700)
93 KOG0651 26S proteasome regulat 99.5 1.4E-14 3.1E-19 151.3 10.4 128 279-434 134-261 (388)
94 PF00004 AAA: ATPase family as 99.5 1.9E-14 4.1E-19 131.9 9.9 93 333-434 1-94 (132)
95 PRK14958 DNA polymerase III su 99.5 6.3E-14 1.4E-18 159.0 16.1 185 279-604 18-226 (509)
96 KOG0740 AAA+-type ATPase [Post 99.5 3.5E-14 7.6E-19 155.8 13.3 223 278-611 154-376 (428)
97 PRK14961 DNA polymerase III su 99.5 1.6E-13 3.5E-18 149.8 18.2 184 279-603 18-225 (363)
98 TIGR02639 ClpA ATP-dependent C 99.5 6.6E-14 1.4E-18 165.5 16.0 191 274-585 180-381 (731)
99 KOG2028 ATPase related to the 99.5 5.9E-14 1.3E-18 149.1 13.6 215 331-652 163-381 (554)
100 KOG0744 AAA+-type ATPase [Post 99.5 1.4E-14 3.1E-19 152.0 8.5 156 331-558 178-345 (423)
101 TIGR01243 CDC48 AAA family ATP 99.5 1.7E-13 3.7E-18 162.1 18.4 218 279-609 180-399 (733)
102 KOG0989 Replication factor C, 99.5 1.6E-13 3.4E-18 143.7 15.7 175 279-585 38-220 (346)
103 PRK07994 DNA polymerase III su 99.5 2.5E-13 5.4E-18 157.0 18.1 184 279-603 18-225 (647)
104 TIGR02903 spore_lon_C ATP-depe 99.5 4.8E-13 1E-17 155.2 19.7 214 279-607 156-403 (615)
105 PF01078 Mg_chelatase: Magnesi 99.5 4.3E-14 9.3E-19 142.2 9.4 182 278-544 4-206 (206)
106 PRK07764 DNA polymerase III su 99.5 2.7E-13 5.8E-18 161.0 17.7 184 279-603 17-226 (824)
107 PRK06645 DNA polymerase III su 99.5 4E-13 8.8E-18 152.0 18.1 185 279-604 23-235 (507)
108 PRK14952 DNA polymerase III su 99.5 4.4E-13 9.6E-18 153.9 18.2 185 279-604 15-225 (584)
109 PRK14964 DNA polymerase III su 99.5 3.6E-13 7.9E-18 151.6 16.9 185 279-604 15-223 (491)
110 TIGR02030 BchI-ChlI magnesium 99.5 4.3E-13 9.4E-18 144.9 16.8 228 278-609 5-292 (337)
111 PRK14957 DNA polymerase III su 99.5 5.4E-13 1.2E-17 152.0 17.9 185 279-604 18-226 (546)
112 PRK14959 DNA polymerase III su 99.5 4.5E-13 9.7E-18 153.9 17.0 184 279-603 18-225 (624)
113 PRK13407 bchI magnesium chelat 99.5 5.9E-13 1.3E-17 143.7 17.0 226 279-608 10-288 (334)
114 TIGR02442 Cob-chelat-sub cobal 99.5 7.2E-13 1.6E-17 154.3 18.7 223 278-604 5-282 (633)
115 PRK08691 DNA polymerase III su 99.5 4.8E-13 1E-17 154.6 16.7 185 279-604 18-226 (709)
116 CHL00081 chlI Mg-protoporyphyr 99.5 8.4E-13 1.8E-17 143.1 17.5 227 279-609 19-305 (350)
117 TIGR02640 gas_vesic_GvpN gas v 99.5 1.6E-12 3.5E-17 135.8 18.2 156 331-551 22-196 (262)
118 PRK12402 replication factor C 99.5 1.4E-12 3.1E-17 139.2 17.7 191 279-603 17-231 (337)
119 COG0714 MoxR-like ATPases [Gen 99.5 5.4E-13 1.2E-17 143.6 14.3 130 267-444 14-147 (329)
120 PRK14951 DNA polymerase III su 99.5 8.2E-13 1.8E-17 152.3 16.5 185 279-604 18-231 (618)
121 PRK05563 DNA polymerase III su 99.5 1.5E-12 3.2E-17 149.6 17.9 186 278-604 17-226 (559)
122 PRK14963 DNA polymerase III su 99.5 2E-12 4.4E-17 146.6 18.8 185 279-604 16-223 (504)
123 TIGR03420 DnaA_homol_Hda DnaA 99.4 2E-12 4.3E-17 130.5 16.6 163 331-604 39-207 (226)
124 PRK14965 DNA polymerase III su 99.4 1.5E-12 3.2E-17 150.1 16.6 185 279-604 18-226 (576)
125 PRK14969 DNA polymerase III su 99.4 1.4E-12 3.1E-17 148.7 16.2 185 279-604 18-226 (527)
126 TIGR00368 Mg chelatase-related 99.4 2.7E-12 5.8E-17 145.3 17.8 248 279-613 194-484 (499)
127 KOG0732 AAA+-type ATPase conta 99.4 1.1E-12 2.4E-17 155.4 15.0 219 279-609 267-492 (1080)
128 KOG0742 AAA+-type ATPase [Post 99.4 1.2E-12 2.5E-17 140.9 13.4 193 329-602 383-588 (630)
129 TIGR03345 VI_ClpV1 type VI sec 99.4 1.3E-12 2.8E-17 156.4 15.4 188 278-585 188-386 (852)
130 PRK14955 DNA polymerase III su 99.4 1.9E-12 4.2E-17 142.9 15.7 185 279-604 18-234 (397)
131 PRK07133 DNA polymerase III su 99.4 3.7E-12 8E-17 148.4 18.2 189 279-603 20-224 (725)
132 smart00350 MCM minichromosome 99.4 3.9E-12 8.5E-17 144.7 18.1 253 271-608 197-486 (509)
133 PHA02544 44 clamp loader, smal 99.4 6.5E-12 1.4E-16 133.6 18.7 191 279-602 23-213 (316)
134 PRK05896 DNA polymerase III su 99.4 3.4E-12 7.3E-17 146.1 17.1 184 279-603 18-225 (605)
135 TIGR02397 dnaX_nterm DNA polym 99.4 5.3E-12 1.1E-16 136.0 17.3 185 279-604 16-224 (355)
136 PRK06647 DNA polymerase III su 99.4 4.2E-12 9.2E-17 145.7 17.5 185 279-604 18-226 (563)
137 PRK06305 DNA polymerase III su 99.4 5.1E-12 1.1E-16 141.8 17.6 184 279-603 19-227 (451)
138 PRK07940 DNA polymerase III su 99.4 2.3E-12 5.1E-17 142.0 14.3 114 278-434 6-142 (394)
139 TIGR01650 PD_CobS cobaltochela 99.4 2.8E-12 6E-17 137.4 14.4 160 331-551 65-231 (327)
140 PRK08451 DNA polymerase III su 99.4 6.5E-12 1.4E-16 142.7 18.0 185 279-604 16-224 (535)
141 PRK08903 DnaA regulatory inact 99.4 7.4E-12 1.6E-16 127.3 16.1 160 331-606 43-207 (227)
142 PRK14970 DNA polymerase III su 99.4 9.8E-12 2.1E-16 135.5 18.0 190 279-604 19-215 (367)
143 PRK14948 DNA polymerase III su 99.4 9.3E-12 2E-16 144.4 18.5 183 279-602 18-226 (620)
144 PRK13531 regulatory ATPase Rav 99.4 1.4E-11 3.1E-16 137.6 19.1 233 268-609 11-267 (498)
145 PRK11034 clpA ATP-dependent Cl 99.4 5.1E-12 1.1E-16 149.2 16.4 187 278-584 187-384 (758)
146 PRK04195 replication factor C 99.4 1.4E-11 3E-16 139.4 19.1 187 279-601 16-205 (482)
147 PRK14953 DNA polymerase III su 99.4 1E-11 2.3E-16 140.4 17.9 189 279-603 18-225 (486)
148 PRK09111 DNA polymerase III su 99.4 1.1E-11 2.4E-16 143.1 17.7 190 279-604 26-239 (598)
149 TIGR00764 lon_rel lon-related 99.4 6E-12 1.3E-16 145.8 15.1 163 389-633 211-387 (608)
150 PRK14954 DNA polymerase III su 99.4 1.3E-11 2.9E-16 142.7 17.9 190 279-604 18-234 (620)
151 KOG0730 AAA+-type ATPase [Post 99.4 7.5E-12 1.6E-16 141.7 15.3 215 278-606 185-401 (693)
152 COG2812 DnaX DNA polymerase II 99.4 3.4E-12 7.5E-17 143.7 12.4 192 278-605 17-227 (515)
153 PTZ00111 DNA replication licen 99.4 1.7E-11 3.7E-16 144.9 18.5 160 271-470 444-610 (915)
154 CHL00095 clpC Clp protease ATP 99.4 8.5E-12 1.8E-16 149.4 16.3 187 278-585 180-377 (821)
155 PRK14950 DNA polymerase III su 99.3 1.9E-11 4E-16 141.4 18.0 185 279-604 18-227 (585)
156 PRK00440 rfc replication facto 99.3 2.3E-11 5E-16 128.7 16.5 185 279-604 19-209 (319)
157 PRK14971 DNA polymerase III su 99.3 3.1E-11 6.7E-16 140.0 18.1 185 278-603 18-227 (614)
158 PF07728 AAA_5: AAA domain (dy 99.3 1.2E-12 2.6E-17 122.8 4.9 122 332-469 1-123 (139)
159 PRK10865 protein disaggregatio 99.3 1.2E-11 2.5E-16 148.5 14.5 165 275-551 177-352 (857)
160 PRK08084 DNA replication initi 99.3 4.2E-11 9.2E-16 123.3 16.6 68 523-606 148-217 (235)
161 COG0606 Predicted ATPase with 99.3 1.4E-11 3E-16 136.0 13.6 184 278-545 180-384 (490)
162 TIGR00362 DnaA chromosomal rep 99.3 4.3E-11 9.4E-16 132.3 16.4 173 331-607 137-319 (405)
163 PRK06893 DNA replication initi 99.3 4.8E-11 1E-15 122.3 15.3 165 331-604 40-209 (229)
164 PF07726 AAA_3: ATPase family 99.3 1.3E-12 2.8E-17 122.3 2.4 92 332-440 1-93 (131)
165 PHA02244 ATPase-like protein 99.3 1.5E-10 3.3E-15 125.7 18.7 184 331-583 120-305 (383)
166 PF00308 Bac_DnaA: Bacterial d 99.3 6.2E-11 1.4E-15 120.9 14.9 172 331-606 35-216 (219)
167 TIGR03346 chaperone_ClpB ATP-d 99.3 4.3E-11 9.4E-16 143.8 15.4 188 278-585 174-372 (852)
168 TIGR02031 BchD-ChlD magnesium 99.3 7.1E-11 1.5E-15 136.6 16.4 206 331-606 17-238 (589)
169 PRK14086 dnaA chromosomal repl 99.3 1.2E-10 2.7E-15 133.6 18.1 176 331-607 315-497 (617)
170 TIGR02928 orc1/cdc6 family rep 99.3 1.5E-10 3.2E-15 125.5 17.7 213 278-608 16-256 (365)
171 PRK00411 cdc6 cell division co 99.3 2.3E-10 5E-15 125.3 19.4 212 277-607 30-263 (394)
172 KOG0743 AAA+-type ATPase [Post 99.3 1.3E-10 2.9E-15 127.4 17.2 168 331-583 236-415 (457)
173 PRK00149 dnaA chromosomal repl 99.3 4.9E-11 1.1E-15 133.7 14.0 176 331-607 149-331 (450)
174 PRK05642 DNA replication initi 99.2 2.1E-10 4.6E-15 118.0 17.4 168 331-608 46-218 (234)
175 PTZ00112 origin recognition co 99.2 2.2E-10 4.8E-15 133.8 17.7 205 278-604 756-987 (1164)
176 PRK08727 hypothetical protein; 99.2 3.1E-10 6.6E-15 116.8 16.9 168 331-608 42-214 (233)
177 KOG0991 Replication factor C, 99.2 7.8E-11 1.7E-15 119.5 11.7 106 278-434 28-138 (333)
178 KOG2170 ATPase of the AAA+ sup 99.2 2.7E-10 5.8E-15 119.4 14.8 212 266-551 71-298 (344)
179 PRK12422 chromosomal replicati 99.2 1.5E-10 3.2E-15 129.8 13.6 172 331-606 142-321 (445)
180 PRK14088 dnaA chromosomal repl 99.2 3.4E-10 7.3E-15 126.9 15.8 177 331-607 131-314 (440)
181 COG1224 TIP49 DNA helicase TIP 99.2 5.2E-10 1.1E-14 119.4 16.1 61 279-366 41-103 (450)
182 PF06068 TIP49: TIP49 C-termin 99.2 3.1E-10 6.8E-15 122.5 14.2 62 278-366 25-88 (398)
183 PRK13765 ATP-dependent proteas 99.2 1.8E-10 3.9E-15 133.7 13.3 136 388-594 219-360 (637)
184 PRK09112 DNA polymerase III su 99.1 1.2E-09 2.7E-14 119.0 17.8 186 279-599 25-241 (351)
185 COG4650 RtcR Sigma54-dependent 99.1 2.8E-10 6E-15 118.7 11.9 199 331-604 209-424 (531)
186 PRK14087 dnaA chromosomal repl 99.1 6.6E-10 1.4E-14 124.8 15.9 179 331-608 142-329 (450)
187 PRK09862 putative ATP-dependen 99.1 8.1E-10 1.8E-14 125.2 16.3 229 331-613 211-477 (506)
188 TIGR00678 holB DNA polymerase 99.1 6.7E-10 1.5E-14 109.9 12.9 143 331-585 15-181 (188)
189 PF14532 Sigma54_activ_2: Sigm 99.1 2.7E-11 5.8E-16 114.4 2.5 70 331-434 22-94 (138)
190 COG0542 clpA ATP-binding subun 99.1 1.2E-09 2.5E-14 127.9 16.5 190 274-584 168-368 (786)
191 PF05673 DUF815: Protein of un 99.1 1.9E-09 4.2E-14 111.1 14.8 175 279-552 29-206 (249)
192 PRK07471 DNA polymerase III su 99.0 4.4E-09 9.6E-14 115.2 17.1 111 279-434 21-166 (365)
193 PRK05564 DNA polymerase III su 99.0 1.5E-09 3.3E-14 116.1 12.8 105 279-434 6-118 (313)
194 cd00009 AAA The AAA+ (ATPases 99.0 1.6E-09 3.4E-14 98.9 11.1 86 331-434 20-109 (151)
195 COG1241 MCM2 Predicted ATPase 99.0 2.2E-09 4.7E-14 124.5 14.2 252 271-604 280-570 (682)
196 PRK06620 hypothetical protein; 99.0 6.2E-09 1.3E-13 106.0 15.3 63 525-603 130-194 (214)
197 COG0470 HolB ATPase involved i 99.0 2.6E-09 5.7E-14 113.1 13.1 85 332-434 26-134 (325)
198 KOG0480 DNA replication licens 99.0 5.7E-09 1.2E-13 117.9 16.2 255 271-610 339-625 (764)
199 PRK04132 replication factor C 99.0 3.6E-09 7.8E-14 125.8 14.3 171 324-603 558-736 (846)
200 KOG1942 DNA helicase, TBP-inte 99.0 1.4E-08 3E-13 106.1 16.0 62 521-601 349-410 (456)
201 COG1474 CDC6 Cdc6-related prot 99.0 1.6E-08 3.5E-13 110.8 17.2 209 279-608 19-247 (366)
202 PRK07399 DNA polymerase III su 99.0 6.2E-09 1.3E-13 111.9 13.5 47 278-355 5-51 (314)
203 PRK09087 hypothetical protein; 99.0 5.9E-09 1.3E-13 107.0 12.5 69 524-608 135-205 (226)
204 PF13177 DNA_pol3_delta2: DNA 98.9 1.1E-08 2.3E-13 99.8 13.6 104 281-434 1-127 (162)
205 PRK08058 DNA polymerase III su 98.9 4.3E-09 9.2E-14 113.8 11.2 111 279-434 7-135 (329)
206 PRK13406 bchD magnesium chelat 98.9 1.5E-08 3.3E-13 116.9 15.4 197 331-603 26-227 (584)
207 smart00763 AAA_PrkA PrkA AAA d 98.9 3.3E-08 7.2E-13 107.5 16.7 60 278-363 52-118 (361)
208 TIGR03015 pepcterm_ATPase puta 98.9 6E-08 1.3E-12 100.5 18.0 73 525-609 177-249 (269)
209 KOG1969 DNA replication checkp 98.9 4.4E-08 9.6E-13 112.4 17.7 86 331-434 327-412 (877)
210 COG1239 ChlI Mg-chelatase subu 98.9 1.3E-08 2.8E-13 111.4 12.7 211 274-587 14-282 (423)
211 KOG0478 DNA replication licens 98.9 7E-09 1.5E-13 118.0 10.7 230 271-584 423-672 (804)
212 KOG0735 AAA+-type ATPase [Post 98.9 2.8E-08 6.1E-13 113.5 14.9 194 328-608 429-626 (952)
213 PF00493 MCM: MCM2/3/5 family 98.8 1.9E-09 4.1E-14 116.7 4.4 249 271-600 18-300 (331)
214 PRK05707 DNA polymerase III su 98.8 3.3E-08 7.1E-13 107.0 13.5 130 331-551 23-176 (328)
215 COG2607 Predicted ATPase (AAA+ 98.7 3.8E-07 8.2E-12 93.6 15.1 173 279-552 62-238 (287)
216 COG0593 DnaA ATPase involved i 98.7 1.7E-07 3.8E-12 103.4 13.2 71 523-609 225-297 (408)
217 PRK11331 5-methylcytosine-spec 98.7 4.9E-07 1.1E-11 101.0 16.3 123 331-471 195-336 (459)
218 PRK08769 DNA polymerase III su 98.6 4E-07 8.8E-12 98.1 14.6 135 331-551 27-183 (319)
219 PRK06871 DNA polymerase III su 98.6 5.7E-07 1.2E-11 97.2 15.2 129 331-551 25-177 (325)
220 KOG0736 Peroxisome assembly fa 98.6 3E-07 6.5E-12 106.2 13.5 147 331-555 432-578 (953)
221 smart00382 AAA ATPases associa 98.6 1.3E-07 2.7E-12 85.1 8.4 76 331-410 3-93 (148)
222 PRK07993 DNA polymerase III su 98.6 3.9E-07 8.5E-12 98.9 12.7 130 331-551 25-178 (334)
223 PRK06964 DNA polymerase III su 98.6 4.8E-07 1E-11 98.4 12.3 132 331-551 22-202 (342)
224 TIGR00602 rad24 checkpoint pro 98.5 1.1E-06 2.5E-11 102.2 14.7 70 524-604 257-329 (637)
225 PRK06090 DNA polymerase III su 98.5 2E-06 4.3E-11 92.8 14.4 130 331-551 26-178 (319)
226 KOG0477 DNA replication licens 98.5 2.1E-07 4.6E-12 105.1 7.1 156 271-470 443-599 (854)
227 KOG2035 Replication factor C, 98.4 1.6E-06 3.4E-11 90.6 11.9 163 331-599 35-226 (351)
228 COG5271 MDN1 AAA ATPase contai 98.4 8E-07 1.7E-11 107.9 10.4 155 331-554 1544-1704(4600)
229 PRK08699 DNA polymerase III su 98.4 1.2E-06 2.7E-11 94.7 10.6 87 331-434 22-138 (325)
230 PF13173 AAA_14: AAA domain 98.4 1.9E-06 4.2E-11 80.3 10.1 70 331-408 3-74 (128)
231 PRK08116 hypothetical protein; 98.4 1.3E-06 2.8E-11 92.0 9.1 85 331-434 115-205 (268)
232 KOG0990 Replication factor C, 98.3 7.5E-07 1.6E-11 94.6 6.6 90 331-434 63-156 (360)
233 KOG0741 AAA+-type ATPase [Post 98.3 2E-05 4.2E-10 88.4 17.9 92 331-434 539-633 (744)
234 KOG2227 Pre-initiation complex 98.3 6.7E-06 1.5E-10 91.1 13.9 206 278-604 151-377 (529)
235 KOG2680 DNA helicase TIP49, TB 98.3 1.9E-05 4.1E-10 83.4 16.2 49 522-584 341-389 (454)
236 PF06309 Torsin: Torsin; Inte 98.3 4.9E-06 1.1E-10 78.1 10.5 65 265-354 13-77 (127)
237 COG5271 MDN1 AAA ATPase contai 98.3 1.7E-06 3.7E-11 105.2 9.0 146 331-552 889-1046(4600)
238 KOG0481 DNA replication licens 98.3 2.8E-06 6.1E-11 94.5 9.9 257 271-610 325-621 (729)
239 PRK05917 DNA polymerase III su 98.3 8.5E-06 1.8E-10 86.8 13.1 87 331-434 20-120 (290)
240 PF12774 AAA_6: Hydrolytic ATP 98.2 1.4E-05 3E-10 82.7 13.5 67 331-410 33-99 (231)
241 PF01637 Arch_ATPase: Archaeal 98.2 5.8E-06 1.3E-10 82.5 10.2 47 525-584 177-223 (234)
242 PF05621 TniB: Bacterial TniB 98.2 3.1E-05 6.7E-10 82.6 15.9 114 271-410 28-160 (302)
243 PRK12377 putative replication 98.2 4.9E-06 1.1E-10 86.9 9.7 83 331-435 102-191 (248)
244 PF10431 ClpB_D2-small: C-term 98.2 3.2E-06 6.9E-11 73.0 6.2 69 540-612 1-69 (81)
245 PF13401 AAA_22: AAA domain; P 98.2 1.3E-06 2.9E-11 80.2 3.8 37 331-367 5-49 (131)
246 PF12775 AAA_7: P-loop contain 98.2 1.1E-05 2.3E-10 85.4 10.7 201 331-606 34-255 (272)
247 PRK07132 DNA polymerase III su 98.1 5E-05 1.1E-09 81.4 14.8 83 331-434 19-115 (299)
248 KOG0482 DNA replication licens 98.1 8.4E-06 1.8E-10 90.8 8.7 137 271-447 336-477 (721)
249 KOG0479 DNA replication licens 98.1 0.00012 2.7E-09 82.8 17.9 148 271-469 295-450 (818)
250 PRK07276 DNA polymerase III su 98.0 3.2E-05 6.9E-10 82.5 11.6 88 331-434 25-129 (290)
251 KOG1514 Origin recognition com 98.0 4.4E-05 9.5E-10 88.2 13.1 181 331-607 423-629 (767)
252 PRK08181 transposase; Validate 98.0 6.6E-06 1.4E-10 86.9 5.7 86 330-434 106-194 (269)
253 PRK06526 transposase; Provisio 98.0 5.9E-06 1.3E-10 86.5 4.5 87 329-434 97-186 (254)
254 PRK06835 DNA replication prote 98.0 7E-06 1.5E-10 89.0 5.1 82 331-434 184-273 (329)
255 PF01695 IstB_IS21: IstB-like 97.9 1.2E-05 2.6E-10 79.7 5.8 82 331-434 48-135 (178)
256 PRK06921 hypothetical protein; 97.9 1.3E-05 2.8E-10 84.5 6.0 36 331-366 118-157 (266)
257 COG1484 DnaC DNA replication p 97.9 2.4E-05 5.3E-10 81.9 7.5 70 331-410 106-182 (254)
258 PRK05818 DNA polymerase III su 97.9 0.0001 2.2E-09 77.3 11.8 88 330-434 7-113 (261)
259 PRK07952 DNA replication prote 97.9 4.3E-05 9.2E-10 79.7 8.9 82 331-434 100-189 (244)
260 PF00910 RNA_helicase: RNA hel 97.8 5.7E-05 1.2E-09 68.5 8.0 84 333-440 1-84 (107)
261 PF03215 Rad17: Rad17 cell cyc 97.8 0.00052 1.1E-08 78.9 17.3 94 331-434 46-161 (519)
262 PF05729 NACHT: NACHT domain 97.8 0.00021 4.5E-09 67.6 11.1 78 332-410 2-96 (166)
263 PRK09183 transposase/IS protei 97.8 3.2E-05 6.9E-10 81.2 6.0 87 330-434 102-191 (259)
264 PF07693 KAP_NTPase: KAP famil 97.7 0.00064 1.4E-08 72.5 15.3 138 395-604 172-320 (325)
265 PRK08939 primosomal protein Dn 97.6 9.6E-05 2.1E-09 79.5 7.1 37 331-367 157-196 (306)
266 KOG1808 AAA ATPase containing 97.6 7.8E-05 1.7E-09 94.2 6.1 115 331-460 441-559 (1856)
267 PF13207 AAA_17: AAA domain; P 97.4 0.00012 2.6E-09 66.6 4.1 31 333-363 2-32 (121)
268 PF13191 AAA_16: AAA ATPase do 97.4 0.00023 4.9E-09 69.0 5.6 36 331-366 25-63 (185)
269 cd01120 RecA-like_NTPases RecA 97.3 0.0004 8.8E-09 65.1 6.1 32 333-364 2-36 (165)
270 PRK00131 aroK shikimate kinase 97.3 0.00023 5E-09 68.5 4.5 33 330-362 4-36 (175)
271 COG0464 SpoVK ATPases of the A 97.3 0.00037 7.9E-09 79.4 6.5 96 330-435 18-113 (494)
272 COG3267 ExeA Type II secretory 97.3 0.006 1.3E-07 63.8 14.2 68 525-610 185-253 (269)
273 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.0047 1E-07 67.5 13.5 58 278-361 62-120 (358)
274 PF03266 NTPase_1: NTPase; In 97.2 0.00072 1.6E-08 66.6 6.4 23 332-354 1-23 (168)
275 PHA00729 NTP-binding motif con 97.2 0.00064 1.4E-08 70.1 6.3 25 331-355 18-42 (226)
276 PF13604 AAA_30: AAA domain; P 97.2 0.0015 3.2E-08 65.8 8.5 89 331-434 19-118 (196)
277 PRK08118 topology modulation p 97.1 0.00042 9.1E-09 68.0 4.1 33 331-363 2-34 (167)
278 PRK13947 shikimate kinase; Pro 97.1 0.00048 1E-08 66.7 4.2 32 332-363 3-34 (171)
279 PF03969 AFG1_ATPase: AFG1-lik 97.1 0.0022 4.7E-08 70.7 9.8 28 329-356 61-88 (362)
280 PRK07261 topology modulation p 97.1 0.00099 2.1E-08 65.5 6.4 43 332-375 2-44 (171)
281 PRK15455 PrkA family serine pr 97.1 0.00073 1.6E-08 77.8 5.8 60 278-363 77-137 (644)
282 KOG2543 Origin recognition com 97.0 0.0091 2E-07 65.5 13.5 63 275-366 4-66 (438)
283 KOG1051 Chaperone HSP104 and r 97.0 0.0027 5.8E-08 76.5 10.4 76 331-410 209-295 (898)
284 PRK03839 putative kinase; Prov 97.0 0.00062 1.3E-08 66.8 4.1 31 332-362 2-32 (180)
285 cd00464 SK Shikimate kinase (S 97.0 0.00067 1.5E-08 64.1 4.2 31 332-362 1-31 (154)
286 PRK00625 shikimate kinase; Pro 97.0 0.00069 1.5E-08 67.1 4.2 31 332-362 2-32 (173)
287 PRK10536 hypothetical protein; 97.0 0.0041 9E-08 65.4 9.8 23 331-353 75-97 (262)
288 PRK00771 signal recognition pa 97.0 0.1 2.2E-06 59.2 21.5 38 329-366 94-134 (437)
289 TIGR02688 conserved hypothetic 96.9 0.0027 5.9E-08 70.9 8.6 101 331-470 210-313 (449)
290 cd01128 rho_factor Transcripti 96.9 0.0018 3.9E-08 67.8 6.7 26 331-356 17-42 (249)
291 PF13671 AAA_33: AAA domain; P 96.8 0.00063 1.4E-08 63.5 2.5 30 333-364 2-31 (143)
292 KOG1970 Checkpoint RAD17-RFC c 96.8 0.014 3E-07 66.6 13.4 32 331-362 111-142 (634)
293 PRK14532 adenylate kinase; Pro 96.8 0.001 2.2E-08 65.7 4.0 33 332-366 2-34 (188)
294 COG3854 SpoIIIAA ncharacterize 96.8 0.0072 1.6E-07 62.5 10.0 76 331-407 138-230 (308)
295 PRK13948 shikimate kinase; Pro 96.8 0.0013 2.8E-08 65.7 4.7 35 328-362 8-42 (182)
296 PRK06217 hypothetical protein; 96.8 0.0012 2.5E-08 65.4 4.3 33 331-363 2-34 (183)
297 PRK09376 rho transcription ter 96.8 0.0021 4.6E-08 71.2 6.0 79 331-410 170-271 (416)
298 PRK13949 shikimate kinase; Pro 96.8 0.0013 2.8E-08 64.7 4.0 32 331-362 2-33 (169)
299 COG1618 Predicted nucleotide k 96.8 0.0047 1E-07 60.6 7.7 24 331-354 6-29 (179)
300 PRK14530 adenylate kinase; Pro 96.7 0.0016 3.6E-08 66.0 4.5 30 331-360 4-33 (215)
301 cd02020 CMPK Cytidine monophos 96.7 0.0015 3.3E-08 61.0 3.9 30 333-362 2-31 (147)
302 TIGR01425 SRP54_euk signal rec 96.7 0.15 3.2E-06 57.6 20.2 37 330-366 100-139 (429)
303 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0015 3.3E-08 63.9 3.9 33 333-367 2-34 (183)
304 TIGR01618 phage_P_loop phage n 96.7 0.002 4.3E-08 66.4 4.8 22 330-351 12-33 (220)
305 PRK14531 adenylate kinase; Pro 96.7 0.0019 4E-08 64.0 4.4 34 331-366 3-36 (183)
306 cd02021 GntK Gluconate kinase 96.7 0.0016 3.5E-08 61.8 3.7 27 333-359 2-28 (150)
307 KOG3347 Predicted nucleotide k 96.6 0.0016 3.4E-08 63.1 3.6 36 330-367 7-42 (176)
308 COG1125 OpuBA ABC-type proline 96.6 0.015 3.3E-07 61.0 10.9 34 321-354 17-51 (309)
309 cd01124 KaiC KaiC is a circadi 96.6 0.0039 8.5E-08 60.8 6.4 31 333-363 2-35 (187)
310 COG1373 Predicted ATPase (AAA+ 96.6 0.018 3.8E-07 64.4 12.3 69 332-408 39-107 (398)
311 COG0703 AroK Shikimate kinase 96.6 0.0016 3.4E-08 64.5 3.5 32 331-362 3-34 (172)
312 PRK05057 aroK shikimate kinase 96.6 0.0021 4.5E-08 63.3 4.4 33 331-363 5-37 (172)
313 cd01428 ADK Adenylate kinase ( 96.6 0.0017 3.8E-08 63.8 3.8 32 333-366 2-33 (194)
314 PRK14974 cell division protein 96.6 0.011 2.4E-07 64.6 10.2 35 330-364 140-177 (336)
315 PRK03731 aroL shikimate kinase 96.6 0.0022 4.9E-08 62.2 4.4 33 331-363 3-35 (171)
316 TIGR01313 therm_gnt_kin carboh 96.6 0.0016 3.5E-08 62.7 3.3 27 333-359 1-27 (163)
317 PRK13946 shikimate kinase; Pro 96.6 0.002 4.3E-08 63.9 4.0 34 330-363 10-43 (184)
318 PF01583 APS_kinase: Adenylyls 96.6 0.0049 1.1E-07 60.2 6.6 37 331-367 3-42 (156)
319 PF00448 SRP54: SRP54-type pro 96.6 0.01 2.3E-07 59.9 9.1 24 331-354 2-25 (196)
320 cd00227 CPT Chloramphenicol (C 96.6 0.0019 4.1E-08 63.3 3.7 34 331-364 3-36 (175)
321 TIGR00767 rho transcription te 96.5 0.0054 1.2E-07 68.3 7.2 26 331-356 169-194 (415)
322 COG1116 TauB ABC-type nitrate/ 96.5 0.02 4.3E-07 59.8 10.8 33 322-354 20-53 (248)
323 PRK04296 thymidine kinase; Pro 96.5 0.0082 1.8E-07 60.0 7.8 31 331-361 3-36 (190)
324 PTZ00088 adenylate kinase 1; P 96.4 0.0028 6.2E-08 65.5 4.2 30 331-360 7-36 (229)
325 PRK05480 uridine/cytidine kina 96.4 0.031 6.7E-07 56.2 11.6 34 331-364 7-41 (209)
326 COG0529 CysC Adenylylsulfate k 96.4 0.0084 1.8E-07 59.7 7.0 72 331-402 24-100 (197)
327 PRK06762 hypothetical protein; 96.4 0.0032 7E-08 60.8 4.2 36 331-366 3-38 (166)
328 cd02027 APSK Adenosine 5'-phos 96.4 0.0086 1.9E-07 57.5 7.1 34 333-366 2-38 (149)
329 PHA02774 E1; Provisional 96.4 0.024 5.2E-07 65.7 11.7 76 331-440 435-511 (613)
330 PRK12723 flagellar biosynthesi 96.4 0.02 4.4E-07 63.7 10.8 25 330-354 174-198 (388)
331 PHA02624 large T antigen; Prov 96.4 0.024 5.3E-07 65.9 11.7 87 331-440 432-521 (647)
332 PRK06547 hypothetical protein; 96.4 0.0035 7.6E-08 62.0 4.2 32 331-362 16-47 (172)
333 PRK08154 anaerobic benzoate ca 96.3 0.0068 1.5E-07 65.3 6.5 32 331-362 134-165 (309)
334 PRK14528 adenylate kinase; Pro 96.3 0.0039 8.4E-08 62.1 4.2 30 331-360 2-31 (186)
335 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0047 1E-07 60.4 4.6 33 331-365 4-36 (188)
336 cd03284 ABC_MutS1 MutS1 homolo 96.3 0.014 3.1E-07 59.6 8.2 23 330-352 30-52 (216)
337 PRK02496 adk adenylate kinase; 96.3 0.0038 8.3E-08 61.4 3.9 29 332-360 3-31 (184)
338 PF13238 AAA_18: AAA domain; P 96.3 0.0036 7.7E-08 56.8 3.3 22 333-354 1-22 (129)
339 PF05970 PIF1: PIF1-like helic 96.2 0.0099 2.1E-07 65.5 7.4 25 331-355 23-47 (364)
340 cd01131 PilT Pilus retraction 96.2 0.013 2.9E-07 58.9 7.4 25 331-355 2-26 (198)
341 TIGR01351 adk adenylate kinase 96.2 0.0047 1E-07 62.4 3.9 28 333-360 2-29 (210)
342 PF00931 NB-ARC: NB-ARC domain 96.1 0.041 8.8E-07 57.5 11.0 23 331-353 20-42 (287)
343 COG1102 Cmk Cytidylate kinase 96.1 0.0047 1E-07 60.6 3.6 28 333-360 3-30 (179)
344 PLN02200 adenylate kinase fami 96.1 0.0055 1.2E-07 63.5 4.4 36 330-367 43-78 (234)
345 COG0563 Adk Adenylate kinase a 96.1 0.0055 1.2E-07 61.0 4.1 33 332-366 2-34 (178)
346 PF14516 AAA_35: AAA-like doma 96.1 0.1 2.2E-06 56.8 14.3 37 331-367 32-71 (331)
347 PF13521 AAA_28: AAA domain; P 96.1 0.0072 1.6E-07 58.4 4.6 33 333-366 2-34 (163)
348 PRK00279 adk adenylate kinase; 96.1 0.0056 1.2E-07 62.1 4.0 33 332-366 2-34 (215)
349 PF12780 AAA_8: P-loop contain 96.0 0.024 5.3E-07 60.0 8.6 84 330-434 31-114 (268)
350 COG0572 Udk Uridine kinase [Nu 96.0 0.053 1.2E-06 55.7 10.6 105 331-465 9-114 (218)
351 COG4608 AppF ABC-type oligopep 96.0 0.023 4.9E-07 60.0 8.0 100 320-434 28-153 (268)
352 PLN03210 Resistant to P. syrin 95.9 0.045 9.7E-07 69.0 11.9 27 331-357 208-234 (1153)
353 PRK14527 adenylate kinase; Pro 95.9 0.0062 1.3E-07 60.6 3.5 29 331-359 7-35 (191)
354 PRK14722 flhF flagellar biosyn 95.9 0.041 8.9E-07 61.0 10.1 25 330-354 137-161 (374)
355 PF13245 AAA_19: Part of AAA d 95.9 0.013 2.8E-07 50.4 4.9 24 331-354 11-35 (76)
356 cd02019 NK Nucleoside/nucleoti 95.9 0.013 2.8E-07 49.1 4.7 22 333-354 2-23 (69)
357 PRK04182 cytidylate kinase; Pr 95.9 0.0084 1.8E-07 58.0 4.2 29 332-360 2-30 (180)
358 TIGR03574 selen_PSTK L-seryl-t 95.9 0.014 3.1E-07 60.4 6.1 34 333-366 2-38 (249)
359 PRK04040 adenylate kinase; Pro 95.9 0.0089 1.9E-07 59.9 4.3 25 331-355 3-27 (188)
360 PTZ00301 uridine kinase; Provi 95.8 0.042 9.1E-07 56.2 9.2 24 331-354 4-27 (210)
361 PHA02530 pseT polynucleotide k 95.8 0.0082 1.8E-07 63.6 4.2 34 331-366 3-37 (300)
362 smart00534 MUTSac ATPase domai 95.8 0.026 5.7E-07 56.0 7.5 19 333-351 2-20 (185)
363 TIGR01448 recD_rel helicase, p 95.8 0.02 4.4E-07 68.6 7.9 89 331-434 339-441 (720)
364 PRK08233 hypothetical protein; 95.8 0.011 2.5E-07 57.3 4.8 34 331-364 4-38 (182)
365 PRK03846 adenylylsulfate kinas 95.8 0.026 5.7E-07 56.5 7.6 36 331-366 25-63 (198)
366 cd03280 ABC_MutS2 MutS2 homolo 95.8 0.021 4.6E-07 57.3 6.8 27 325-351 21-49 (200)
367 TIGR02237 recomb_radB DNA repa 95.8 0.015 3.3E-07 58.2 5.7 35 331-365 13-50 (209)
368 KOG1968 Replication factor C, 95.8 0.022 4.9E-07 69.0 8.0 91 332-434 359-456 (871)
369 PLN02674 adenylate kinase 95.8 0.0098 2.1E-07 62.2 4.3 34 331-366 32-65 (244)
370 PRK06067 flagellar accessory p 95.7 0.022 4.8E-07 58.4 6.7 33 331-363 26-61 (234)
371 PF00406 ADK: Adenylate kinase 95.7 0.0088 1.9E-07 57.0 3.5 31 335-367 1-31 (151)
372 TIGR03499 FlhF flagellar biosy 95.7 0.12 2.7E-06 55.0 12.5 36 330-365 194-234 (282)
373 PRK10078 ribose 1,5-bisphospho 95.7 0.0088 1.9E-07 59.3 3.6 29 331-359 3-31 (186)
374 KOG0058 Peptide exporter, ABC 95.7 0.068 1.5E-06 63.0 11.2 46 321-366 484-532 (716)
375 TIGR02173 cyt_kin_arch cytidyl 95.7 0.011 2.4E-07 56.9 3.9 29 332-360 2-30 (171)
376 TIGR01526 nadR_NMN_Atrans nico 95.7 0.017 3.8E-07 62.7 5.9 37 331-367 163-199 (325)
377 PRK14526 adenylate kinase; Pro 95.6 0.011 2.5E-07 60.3 4.2 33 332-366 2-34 (211)
378 PRK06696 uridine kinase; Valid 95.6 0.014 3.1E-07 59.6 4.9 37 331-367 23-62 (223)
379 PF09848 DUF2075: Uncharacteri 95.6 0.057 1.2E-06 59.1 9.9 24 331-354 2-25 (352)
380 cd03282 ABC_MSH4_euk MutS4 hom 95.6 0.042 9E-07 55.9 8.1 23 331-353 30-52 (204)
381 PF05272 VirE: Virulence-assoc 95.6 0.032 7E-07 56.5 7.2 97 331-469 53-149 (198)
382 PRK09361 radB DNA repair and r 95.6 0.027 5.8E-07 57.3 6.7 34 331-364 24-60 (225)
383 PLN02199 shikimate kinase 95.6 0.013 2.7E-07 63.0 4.4 32 331-362 103-134 (303)
384 PRK11889 flhF flagellar biosyn 95.6 0.084 1.8E-06 59.0 10.8 35 330-364 241-278 (436)
385 cd01130 VirB11-like_ATPase Typ 95.5 0.045 9.7E-07 54.4 8.0 25 331-355 26-50 (186)
386 COG1936 Predicted nucleotide k 95.5 0.0098 2.1E-07 59.0 3.1 30 332-362 2-31 (180)
387 TIGR01420 pilT_fam pilus retra 95.5 0.034 7.4E-07 60.8 7.7 25 331-355 123-147 (343)
388 PHA01747 putative ATP-dependen 95.5 0.042 9.2E-07 60.4 8.2 80 330-436 190-273 (425)
389 PRK01184 hypothetical protein; 95.5 0.012 2.7E-07 57.8 3.8 29 332-361 3-31 (184)
390 PRK06581 DNA polymerase III su 95.5 0.11 2.5E-06 54.3 10.8 87 331-434 16-114 (263)
391 cd01121 Sms Sms (bacterial rad 95.5 0.019 4.1E-07 63.6 5.5 34 331-364 83-119 (372)
392 PLN02165 adenylate isopentenyl 95.4 0.013 2.8E-07 63.9 3.9 33 331-363 44-76 (334)
393 PRK10867 signal recognition pa 95.4 0.17 3.6E-06 57.3 12.9 37 330-366 100-140 (433)
394 PF01745 IPT: Isopentenyl tran 95.4 0.015 3.3E-07 59.6 4.1 36 332-367 3-38 (233)
395 PRK04220 2-phosphoglycerate ki 95.4 0.05 1.1E-06 58.6 8.3 28 331-358 93-120 (301)
396 TIGR02858 spore_III_AA stage I 95.4 0.043 9.3E-07 58.3 7.7 25 331-355 112-136 (270)
397 PF08433 KTI12: Chromatin asso 95.4 0.033 7.2E-07 59.1 6.8 77 332-409 3-84 (270)
398 PF10923 DUF2791: P-loop Domai 95.4 0.077 1.7E-06 59.6 9.9 173 378-613 227-403 (416)
399 KOG3354 Gluconate kinase [Carb 95.4 0.016 3.5E-07 56.6 3.9 36 330-367 12-47 (191)
400 smart00487 DEXDc DEAD-like hel 95.4 0.04 8.6E-07 52.5 6.7 24 331-354 25-49 (201)
401 PRK05541 adenylylsulfate kinas 95.4 0.015 3.1E-07 56.9 3.7 26 330-355 7-32 (176)
402 PRK11823 DNA repair protein Ra 95.3 0.077 1.7E-06 60.2 9.9 34 331-364 81-117 (446)
403 PRK14529 adenylate kinase; Pro 95.3 0.014 3E-07 60.3 3.6 33 332-366 2-34 (223)
404 PRK00889 adenylylsulfate kinas 95.3 0.022 4.8E-07 55.6 4.8 35 331-365 5-42 (175)
405 PRK05800 cobU adenosylcobinami 95.3 0.036 7.8E-07 54.8 6.3 33 332-364 3-35 (170)
406 PRK00091 miaA tRNA delta(2)-is 95.3 0.017 3.7E-07 62.3 4.3 36 331-366 5-40 (307)
407 PF01443 Viral_helicase1: Vira 95.2 0.025 5.5E-07 57.2 5.1 22 333-354 1-22 (234)
408 cd03281 ABC_MSH5_euk MutS5 hom 95.2 0.032 7E-07 56.9 5.8 22 331-352 30-51 (213)
409 PLN02459 probable adenylate ki 95.2 0.02 4.3E-07 60.4 4.4 34 331-366 30-63 (261)
410 cd03287 ABC_MSH3_euk MutS3 hom 95.2 0.11 2.4E-06 53.6 9.7 22 331-352 32-53 (222)
411 TIGR00455 apsK adenylylsulfate 95.2 0.051 1.1E-06 53.6 7.0 36 331-366 19-57 (184)
412 PRK12608 transcription termina 95.2 0.038 8.2E-07 61.2 6.7 24 331-354 134-157 (380)
413 TIGR02322 phosphon_PhnN phosph 95.2 0.016 3.4E-07 56.7 3.3 25 332-356 3-27 (179)
414 PF13086 AAA_11: AAA domain; P 95.2 0.016 3.5E-07 57.6 3.4 22 333-354 20-41 (236)
415 PF00488 MutS_V: MutS domain V 95.1 0.085 1.8E-06 54.8 8.7 24 331-354 44-67 (235)
416 PRK13764 ATPase; Provisional 95.1 0.037 8.1E-07 64.8 6.6 25 331-355 258-282 (602)
417 cd03283 ABC_MutS-like MutS-lik 95.1 0.088 1.9E-06 53.2 8.5 24 331-354 26-49 (199)
418 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.04 8.7E-07 52.5 5.8 32 323-354 18-50 (144)
419 TIGR00150 HI0065_YjeE ATPase, 95.1 0.024 5.2E-07 54.1 4.1 27 331-357 23-49 (133)
420 PRK12727 flagellar biosynthesi 95.1 0.42 9.1E-06 55.4 14.7 25 330-354 350-374 (559)
421 PF00437 T2SE: Type II/IV secr 95.1 0.037 8.1E-07 57.9 6.0 68 331-406 128-208 (270)
422 TIGR02788 VirB11 P-type DNA tr 95.1 0.047 1E-06 58.8 6.8 24 331-354 145-168 (308)
423 PRK12339 2-phosphoglycerate ki 95.1 0.026 5.6E-07 57.1 4.6 28 331-358 4-31 (197)
424 PF13479 AAA_24: AAA domain 95.0 0.025 5.4E-07 57.6 4.4 20 331-350 4-23 (213)
425 COG1067 LonB Predicted ATP-dep 95.0 0.1 2.2E-06 61.6 9.9 39 386-438 216-254 (647)
426 PF02562 PhoH: PhoH-like prote 95.0 0.079 1.7E-06 54.1 7.9 24 331-354 20-43 (205)
427 PRK09825 idnK D-gluconate kina 95.0 0.027 5.8E-07 55.8 4.3 27 331-357 4-30 (176)
428 cd03243 ABC_MutS_homologs The 94.9 0.064 1.4E-06 53.9 7.0 22 331-352 30-51 (202)
429 COG2274 SunT ABC-type bacterio 94.9 0.16 3.5E-06 60.8 11.4 49 318-366 486-537 (709)
430 TIGR02768 TraA_Ti Ti-type conj 94.9 0.048 1E-06 65.7 6.9 87 331-434 369-464 (744)
431 COG1485 Predicted ATPase [Gene 94.9 0.36 7.7E-06 53.0 12.8 26 329-354 64-89 (367)
432 cd00544 CobU Adenosylcobinamid 94.9 0.094 2E-06 51.8 7.8 31 333-363 2-32 (169)
433 cd01129 PulE-GspE PulE/GspE Th 94.8 0.078 1.7E-06 56.0 7.6 68 331-406 81-160 (264)
434 cd00071 GMPK Guanosine monopho 94.8 0.026 5.7E-07 53.5 3.6 26 333-358 2-27 (137)
435 PRK14737 gmk guanylate kinase; 94.8 0.026 5.6E-07 56.5 3.7 35 330-364 4-38 (186)
436 TIGR02012 tigrfam_recA protein 94.8 0.066 1.4E-06 58.3 7.0 76 331-410 56-148 (321)
437 COG3842 PotA ABC-type spermidi 94.8 0.019 4E-07 63.1 2.8 46 321-366 21-69 (352)
438 PLN02796 D-glycerate 3-kinase 94.8 1 2.2E-05 49.6 16.0 25 331-355 101-125 (347)
439 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.12 2.6E-06 49.5 8.1 34 322-355 16-50 (157)
440 PRK05537 bifunctional sulfate 94.7 0.067 1.5E-06 62.5 7.4 36 331-366 393-432 (568)
441 cd02023 UMPK Uridine monophosp 94.7 0.04 8.7E-07 54.9 4.8 33 333-365 2-35 (198)
442 PRK00300 gmk guanylate kinase; 94.7 0.027 5.8E-07 56.2 3.5 25 331-355 6-30 (205)
443 PRK13900 type IV secretion sys 94.7 0.15 3.2E-06 55.8 9.4 25 331-355 161-185 (332)
444 TIGR03263 guanyl_kin guanylate 94.7 0.022 4.8E-07 55.5 2.8 26 331-356 2-27 (180)
445 PRK13975 thymidylate kinase; P 94.7 0.049 1.1E-06 53.9 5.3 27 331-357 3-29 (196)
446 PRK13808 adenylate kinase; Pro 94.6 0.031 6.8E-07 61.0 4.1 33 332-366 2-34 (333)
447 PRK13889 conjugal transfer rel 94.6 0.086 1.9E-06 65.0 8.3 89 331-434 363-458 (988)
448 COG1419 FlhF Flagellar GTP-bin 94.6 0.21 4.6E-06 55.7 10.5 39 328-366 201-246 (407)
449 PF00485 PRK: Phosphoribulokin 94.6 0.028 6.1E-07 56.1 3.5 23 333-355 2-24 (194)
450 cd03222 ABC_RNaseL_inhibitor T 94.6 0.1 2.2E-06 51.9 7.3 24 331-354 26-49 (177)
451 PRK11545 gntK gluconate kinase 94.6 0.024 5.2E-07 55.3 2.8 25 336-360 1-25 (163)
452 cd02028 UMPK_like Uridine mono 94.6 0.043 9.2E-07 54.4 4.5 34 333-366 2-38 (179)
453 PRK12338 hypothetical protein; 94.6 0.036 7.8E-07 60.1 4.3 29 330-358 4-32 (319)
454 TIGR00174 miaA tRNA isopenteny 94.5 0.038 8.3E-07 59.2 4.3 34 333-366 2-35 (287)
455 PF10443 RNA12: RNA12 protein; 94.5 1.5 3.2E-05 49.6 16.7 35 331-367 18-54 (431)
456 cd02024 NRK1 Nicotinamide ribo 94.5 0.034 7.3E-07 55.9 3.7 23 333-355 2-24 (187)
457 TIGR00959 ffh signal recogniti 94.5 0.42 9E-06 54.1 12.7 37 330-366 99-139 (428)
458 PF06414 Zeta_toxin: Zeta toxi 94.5 0.04 8.8E-07 55.2 4.2 38 330-367 15-53 (199)
459 cd03286 ABC_MSH6_euk MutS6 hom 94.5 0.11 2.4E-06 53.5 7.5 23 331-353 31-53 (218)
460 COG2804 PulE Type II secretory 94.5 0.15 3.2E-06 58.2 9.0 85 331-438 259-355 (500)
461 PLN02840 tRNA dimethylallyltra 94.4 0.043 9.4E-07 61.6 4.7 36 331-366 22-57 (421)
462 PF06048 DUF927: Domain of unk 94.4 0.23 5E-06 53.0 10.0 104 266-410 154-257 (286)
463 PRK08356 hypothetical protein; 94.4 0.051 1.1E-06 54.3 4.6 33 331-366 6-38 (195)
464 PRK13851 type IV secretion sys 94.4 0.081 1.7E-06 58.1 6.5 25 331-355 163-187 (344)
465 cd02022 DPCK Dephospho-coenzym 94.4 0.043 9.4E-07 54.1 4.0 32 333-367 2-33 (179)
466 PLN02348 phosphoribulokinase 94.3 0.15 3.2E-06 56.9 8.5 26 331-356 50-75 (395)
467 cd03285 ABC_MSH2_euk MutS2 hom 94.3 0.14 3.1E-06 52.6 7.9 23 331-353 31-53 (222)
468 cd03115 SRP The signal recogni 94.3 0.058 1.3E-06 52.5 4.8 35 332-366 2-39 (173)
469 PRK14021 bifunctional shikimat 94.3 0.039 8.6E-07 64.0 4.1 33 331-363 7-39 (542)
470 TIGR00235 udk uridine kinase. 94.3 0.041 8.9E-07 55.5 3.7 25 331-355 7-31 (207)
471 PRK12337 2-phosphoglycerate ki 94.2 0.13 2.8E-06 58.4 8.0 34 330-363 255-289 (475)
472 PRK09270 nucleoside triphospha 94.2 0.091 2E-06 53.9 6.3 25 331-355 34-58 (229)
473 TIGR00064 ftsY signal recognit 94.2 0.12 2.6E-06 54.9 7.3 36 330-365 72-110 (272)
474 COG4088 Predicted nucleotide k 94.2 0.033 7.2E-07 56.8 2.9 24 332-355 3-26 (261)
475 PRK13951 bifunctional shikimat 94.2 0.044 9.5E-07 62.8 4.1 32 332-363 2-33 (488)
476 TIGR00017 cmk cytidylate kinas 94.1 0.052 1.1E-06 55.7 4.3 29 331-359 3-31 (217)
477 PF04851 ResIII: Type III rest 94.1 0.096 2.1E-06 50.2 5.9 32 331-362 26-57 (184)
478 PRK10875 recD exonuclease V su 94.1 0.23 5E-06 58.6 10.0 24 331-354 168-191 (615)
479 PRK05986 cob(I)alamin adenolsy 94.1 0.29 6.2E-06 49.5 9.3 24 331-354 23-46 (191)
480 PRK06761 hypothetical protein; 94.1 0.052 1.1E-06 58.0 4.2 33 331-363 4-36 (282)
481 KOG0055 Multidrug/pheromone ex 94.1 0.3 6.5E-06 60.9 11.1 45 323-367 1008-1055(1228)
482 TIGR03880 KaiC_arch_3 KaiC dom 94.1 0.21 4.6E-06 50.8 8.5 34 331-364 17-53 (224)
483 COG0324 MiaA tRNA delta(2)-iso 94.0 0.058 1.3E-06 58.2 4.5 36 331-366 4-39 (308)
484 PRK14723 flhF flagellar biosyn 94.0 0.9 2E-05 54.8 14.7 25 330-354 185-209 (767)
485 COG1124 DppF ABC-type dipeptid 93.9 0.04 8.7E-07 57.4 2.9 45 322-366 24-71 (252)
486 PF00625 Guanylate_kin: Guanyl 93.9 0.082 1.8E-06 52.2 5.0 28 331-358 3-30 (183)
487 PRK14730 coaE dephospho-CoA ki 93.9 0.056 1.2E-06 54.4 3.9 34 332-367 3-36 (195)
488 cd01672 TMPK Thymidine monopho 93.9 0.069 1.5E-06 52.2 4.4 22 333-354 3-24 (200)
489 PF13555 AAA_29: P-loop contai 93.9 0.074 1.6E-06 44.2 3.8 23 332-354 25-47 (62)
490 TIGR02525 plasmid_TraJ plasmid 93.8 0.17 3.7E-06 56.1 7.8 24 331-354 150-173 (372)
491 PRK07667 uridine kinase; Provi 93.8 0.086 1.9E-06 52.8 4.9 36 331-366 18-56 (193)
492 PRK08099 bifunctional DNA-bind 93.7 0.069 1.5E-06 59.8 4.5 29 331-359 220-248 (399)
493 COG1120 FepC ABC-type cobalami 93.7 0.066 1.4E-06 56.5 4.1 45 323-367 20-67 (258)
494 cd00820 PEPCK_HprK Phosphoenol 93.7 0.046 9.9E-07 50.3 2.5 26 326-351 10-36 (107)
495 PRK00023 cmk cytidylate kinase 93.7 0.063 1.4E-06 55.3 3.8 29 331-359 5-33 (225)
496 PRK13477 bifunctional pantoate 93.7 0.063 1.4E-06 61.9 4.2 34 325-358 279-312 (512)
497 COG1855 ATPase (PilT family) [ 93.7 0.079 1.7E-06 59.5 4.7 24 331-354 264-287 (604)
498 PF05707 Zot: Zonular occluden 93.7 0.12 2.6E-06 51.7 5.7 72 333-412 3-96 (193)
499 COG3839 MalK ABC-type sugar tr 93.6 0.045 9.8E-07 59.8 2.8 33 322-354 20-53 (338)
500 PRK09354 recA recombinase A; P 93.6 0.34 7.4E-06 53.3 9.6 79 331-409 61-152 (349)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-70 Score=579.41 Aligned_cols=445 Identities=60% Similarity=0.889 Sum_probs=377.6
Q ss_pred cccccCCCCCCCCCCCCCCceEe-ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHhhcccccChHHH
Q 005663 207 SITSSYGDPPEVWQPPGDGIAVR-VNGQGPNLVRGGGSGSGFGSGSKDGCWGGSNLGNKFPTPKEICKGLDKFVIGQERA 285 (684)
Q Consensus 207 ~~~~~~~~~~~~w~~~g~~~~~r-~~~~~~~~~~gGgg~g~~g~~~~~~~~~g~~~~~~~~~~~~l~~~Ld~~ViGQd~a 285 (684)
.-+.+..++++-|.+ +.+++.. ............+. ..+ ......|.|-.-.+..++|+++++.||++||||+.|
T Consensus 78 ~~~~s~~~~~~t~~~-s~~f~~~k~~~sfv~~~~~~~~--~~~-~~~p~~~~gg~~~k~~P~PkeI~~~Ldk~VVGQe~A 153 (564)
T KOG0745|consen 78 PKCTSQCTPLETFVS-SQGFILCKCNKSFVVLYEADGA--KPG-KLSPSNRDGGFQLKPPPTPKEICEYLDKFVVGQEKA 153 (564)
T ss_pred ccccccCCchhhccC-CCCeEEeeccchhhhhhhcccC--CCC-CCCccccccccccCCCCChHHHHHHhhhheechhhh
Confidence 457778888988865 4556554 11111111111111 001 011112333333347899999999999999999999
Q ss_pred HHHHHHHHHhhhhhHhhhh--hcccccCCCC--------------------------CCCCCCCCCcccccccceEEEEc
Q 005663 286 KKVLSVAVYNHYMRIYNES--SQKRSAGESS--------------------------SCTTDGVDDDTVELEKSNILLMG 337 (684)
Q Consensus 286 K~~L~~av~~~~~r~~~~~--~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~vLL~G 337 (684)
|+.|.++|||||+|+++.. .++..++.+. ..++...+++++++.++||||.|
T Consensus 154 KKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~dv~LeKSNvLllG 233 (564)
T KOG0745|consen 154 KKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDEDVELEKSNVLLLG 233 (564)
T ss_pred hheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccccccccceeeecccEEEEC
Confidence 9999999999999999832 2211111000 12334445669999999999999
Q ss_pred cCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccC
Q 005663 338 PTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 338 PpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~ 417 (684)
|+|+|||+||++||+.+++||+..||+.++++||+|++++..+.+++..+.+++++++.||+||||+||+..+..+.+..
T Consensus 234 PtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~ 313 (564)
T KOG0745|consen 234 PTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTS 313 (564)
T ss_pred CCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888889
Q ss_pred CCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcc----ccc
Q 005663 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP----VRA 493 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~----v~~ 493 (684)
+|++||+||++||+++||++|+||++|..+..+++.++|||+||+||+.|+|.+||++|.+|+.+..|||+.+ ++.
T Consensus 314 RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~ 393 (564)
T KOG0745|consen 314 RDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRA 393 (564)
T ss_pred ccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 666
Q ss_pred cccc-CCC-chhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCcee
Q 005663 494 NMRA-GGV-TDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 494 ~~~~-~~~-~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l 571 (684)
.+.. .+. ......+.+++.+++.||+.+|++|||++||+++++|.+|+++++.+|++++.++|.+||+++|.+.++++
T Consensus 394 ~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L 473 (564)
T KOG0745|consen 394 NMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVEL 473 (564)
T ss_pred hcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeE
Confidence 6655 233 33344566999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCccc-CCCcceEEcCCChHHH
Q 005663 572 HFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RGCGAKILYGKGALDR 650 (684)
Q Consensus 572 ~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~-~~~~~~i~~~~g~l~~ 650 (684)
.||++|++.||+.+...++|||+||.++|++++++|+++|.+ +|..|+||++.|.+.. ++++.+++.+++.++.
T Consensus 474 ~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPGS-----dI~~V~Vdee~v~g~~~~~~s~~~~~~~~~~~~ 548 (564)
T KOG0745|consen 474 HFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPGS-----DIKAVLVDEEAVKGEKEPGYSRKILKGDEVLER 548 (564)
T ss_pred EecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCCCC-----ceEEEEecHHHhcccCCCccchhhhcccchhhh
Confidence 999999999999999999999999999999999999999954 4999999999999988 7889999888888999
Q ss_pred HHHHhhhhhh
Q 005663 651 YLAQHKRKDL 660 (684)
Q Consensus 651 ~l~~~~~~~~ 660 (684)
|+.+.+.+..
T Consensus 549 ~~se~~~~~~ 558 (564)
T KOG0745|consen 549 YVSETESKDG 558 (564)
T ss_pred hccccccccC
Confidence 9987776654
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-68 Score=547.73 Aligned_cols=345 Identities=61% Similarity=0.989 Sum_probs=326.9
Q ss_pred CCCCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCc
Q 005663 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (684)
Q Consensus 263 ~~~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTG 342 (684)
...|+|+++++.||++||||++||+.|+.+|+|||+|+.... +..++++.++|+||+||+|+|
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~-----------------~~~dvEL~KSNILLiGPTGsG 109 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKE-----------------DNDDVELSKSNILLIGPTGSG 109 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccC-----------------CCCceeeeeccEEEECCCCCc
Confidence 468999999999999999999999999999999999986433 123489999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCch
Q 005663 343 KTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 343 KT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~ 422 (684)
||+||++||+.+++||...|++.++++||+|++++..+..+++.++++++.|+.|||+||||||+.+..++.++.+|++|
T Consensus 110 KTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG 189 (408)
T COG1219 110 KTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG 189 (408)
T ss_pred HHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCch
Q 005663 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~ 502 (684)
|+||++||++|||++.+||++|+++++..+.++|||+||+|||+|+|.+||++++.|.....|||++++.... .
T Consensus 190 EGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~------~ 263 (408)
T COG1219 190 EGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKS------K 263 (408)
T ss_pred hHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchh------h
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876431 2
Q ss_pred hhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHH
Q 005663 503 AVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La 582 (684)
......+++.+.|+||+++|++|||++|++++..+.+|+++++.+|++++.|++.+||+++|++.++++.|+++|++.+|
T Consensus 264 ~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA 343 (408)
T COG1219 264 KKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIA 343 (408)
T ss_pred hhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCccc
Q 005663 583 KKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 583 ~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~ 634 (684)
+++....+|||+||.++|.+|++.|+++|+.+ ++.+++|++++|.+..
T Consensus 344 ~~A~~rkTGARGLRsI~E~~lld~MfelPs~~----~v~~v~I~~~~v~~~~ 391 (408)
T COG1219 344 KKAIERKTGARGLRSIIEELLLDVMFELPSLE----DVEKVVITEEVVDGNA 391 (408)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHhhCCCCC----CceEEEEeHHHhCCCC
Confidence 99999999999999999999999999999875 6899999999998765
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=1.8e-51 Score=451.73 Aligned_cols=343 Identities=62% Similarity=0.987 Sum_probs=308.4
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005663 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT 344 (684)
.++|+++++.|+++|+||++||+.|..++++||+|+...... ..++.++..++||+||||||||
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~----------------~~~~~~~~~~iLl~Gp~GtGKT 122 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKK----------------DDDVELQKSNILLIGPTGSGKT 122 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhccccc----------------ccccccCCceEEEEcCCCCCHH
Confidence 789999999999999999999999999999999997543210 0134455689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHH
Q 005663 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 345 ~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~ 424 (684)
++|+++|+.++.||+.++++.+.+.+|+|++.+..+..++..+.+.++.+.++||||||||++.+.+.+.+.++|+++++
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~ 202 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEG 202 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHH
Confidence 99999999999999999999999899999998888888888887888889999999999999998866666789999999
Q ss_pred HHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005663 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~ 504 (684)
+|++||++|||+.+.||++|+.+.+....+.|+|+|++|||+|+|.++++++..|.....+||+.+..... ...
T Consensus 203 vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~------~~~ 276 (412)
T PRK05342 203 VQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKK------EKR 276 (412)
T ss_pred HHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCcccccccc------ccc
Confidence 99999999999999999999988888889999999999999999999999999998888999986533210 111
Q ss_pred hhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHh
Q 005663 505 VTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 505 ~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~ 584 (684)
....+++.+.++||++++|+|||++|+|.++.|.+|+++++.+|+.++++.+.+||++.+..+++.+.++++++++|++.
T Consensus 277 ~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~ 356 (412)
T PRK05342 277 TEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKK 356 (412)
T ss_pred hhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence 13678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCcc
Q 005663 585 AISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 585 a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~ 633 (684)
+|+..+|||+|+++|++.+.+.|+++|+.+ .+..++||++.|.+.
T Consensus 357 ~~~~~~GAR~Lrriie~~l~~~~~~~p~~~----~~~~v~I~~~~v~~~ 401 (412)
T PRK05342 357 AIERKTGARGLRSILEEILLDVMFELPSRE----DVEKVVITKEVVEGK 401 (412)
T ss_pred CCCCCCCCchHHHHHHHHhHHHHHhccccC----CCceEEECHHHhccc
Confidence 999999999999999999999999999754 567899999998765
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=6.3e-51 Score=446.03 Aligned_cols=345 Identities=60% Similarity=0.968 Sum_probs=307.4
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005663 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGK 343 (684)
..++|+++++.|+++|+||++||+.+..++++||+++....... .+.++++.+.++||+|||||||
T Consensus 64 ~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~--------------~~~~~~~~~~~iLL~GP~GsGK 129 (413)
T TIGR00382 64 YLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK--------------SDNGVELSKSNILLIGPTGSGK 129 (413)
T ss_pred CCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc--------------cccccccCCceEEEECCCCcCH
Confidence 36899999999999999999999999999999999974321000 0123455668999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchH
Q 005663 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 344 T~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e 423 (684)
|++|+++|+.++.||..++++.+.+++|+|++.+..+..++..+++.++.+.+|||||||||++++++.+.+.++|++++
T Consensus 130 T~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccch
Confidence 99999999999999999999999888999998888888888888888888999999999999999987777788999999
Q ss_pred HHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005663 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~ 503 (684)
++|+.||++|||..++||..|+.+.+....+.|+|+|++|||+|+|.++++++..+..+..+||+.+.... .
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~--------~ 281 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK--------S 281 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc--------c
Confidence 99999999999999999988988888888999999999999999999999999988877889997543211 1
Q ss_pred hhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHH
Q 005663 504 VVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~ 583 (684)
.....+++.+.++||++++|+|||++|+|.++.|.+|+.+++.+|+..+++++.++|++.+..+++.+.++++|+++|++
T Consensus 282 ~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~ 361 (413)
T TIGR00382 282 KEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAK 361 (413)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHH
Confidence 12346677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCccc
Q 005663 584 KAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 584 ~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~ 634 (684)
.+|+..+|||+|+++|++.+.+.|+++|+.+ ++..++||++.|.+..
T Consensus 362 ~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~~----~~~~v~i~~~~v~~~~ 408 (413)
T TIGR00382 362 KALERKTGARGLRSIVEGLLLDVMFDLPSLE----DLEKVVITKETVLKQS 408 (413)
T ss_pred hCCCCCCCchHHHHHHHHhhHHHHhhCCCCC----CCcEEEECHHHHcCcC
Confidence 9999999999999999999999999999865 5788999999987653
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=6.2e-43 Score=379.58 Aligned_cols=285 Identities=44% Similarity=0.708 Sum_probs=246.7
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005663 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~ 345 (684)
.+|+++.++|+++|+||++||+.+..++++||+|...... ..-+.+|.++||+||||||||+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~------------------~~~e~~p~~ILLiGppG~GKT~ 62 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEE------------------LKDEVTPKNILMIGPTGVGKTE 62 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccc------------------cccccCCceEEEECCCCCCHHH
Confidence 3799999999999999999999999999999998532110 0113456899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcc---------------------------------cc---
Q 005663 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS---------------------------------DY--- 389 (684)
Q Consensus 346 LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a---------------------------------~~--- 389 (684)
+|++||+.++.||+.+|++.+.+.+|+|.+.+..++.++..+ ..
T Consensus 63 lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~ 142 (441)
T TIGR00390 63 IARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQ 142 (441)
T ss_pred HHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999999888999987778777776554 00
Q ss_pred ------------------------------h-------------------------------------------------
Q 005663 390 ------------------------------N------------------------------------------------- 390 (684)
Q Consensus 390 ------------------------------~------------------------------------------------- 390 (684)
.
T Consensus 143 ~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~ 222 (441)
T TIGR00390 143 TEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKA 222 (441)
T ss_pred cccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHH
Confidence 0
Q ss_pred --------------------HHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCC
Q 005663 391 --------------------VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (684)
Q Consensus 391 --------------------v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~ 450 (684)
-..++.||||||||||+..+. .+.++|+++++||+.||++|||+.+++
T Consensus 223 l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~---------- 290 (441)
T TIGR00390 223 LIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNT---------- 290 (441)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeee----------
Confidence 013678999999999999764 345889999999999999999999875
Q ss_pred CCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcc
Q 005663 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGR 530 (684)
Q Consensus 451 ~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R 530 (684)
+...|+|+||+|||+|+|.. ++|+| ++|||++|
T Consensus 291 -k~~~v~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 323 (441)
T TIGR00390 291 -KYGMVKTDHILFIAAGAFQL-----------------------------------------AKPSD-----LIPELQGR 323 (441)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 12489999999999999863 12334 68999999
Q ss_pred cceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCC-----CCCChHHHHHHHHHHHHH
Q 005663 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILMD 605 (684)
Q Consensus 531 ~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~-----~~~GAR~Lr~iIe~~l~~ 605 (684)
|++++.+.+|+++++.+|++++.+++.+||+++|+..|+++.|+++|++.||+.++. .++|||.|+.++|+++.+
T Consensus 324 ~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d 403 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLED 403 (441)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 799999999999999999
Q ss_pred HHhcCCCCcCCCCcccEEEechhccCc
Q 005663 606 AMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 606 al~e~~~~~~g~~~i~~v~vdee~v~~ 632 (684)
.++++|+. .+..++||+++|..
T Consensus 404 ~~fe~p~~-----~~~~v~I~~~~V~~ 425 (441)
T TIGR00390 404 ISFEAPDL-----SGQNITIDADYVSK 425 (441)
T ss_pred HHhcCCCC-----CCCEEEECHHHHHh
Confidence 99999986 36789999998864
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=1.1e-42 Score=377.80 Aligned_cols=287 Identities=44% Similarity=0.708 Sum_probs=247.9
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005663 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT 344 (684)
..+|+++.++|+++|+||++||+.+..++++||+|...... ...+..+.++||+||||||||
T Consensus 3 ~~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~------------------~~~e~~~~~ILliGp~G~GKT 64 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEE------------------LRDEVTPKNILMIGPTGVGKT 64 (443)
T ss_pred CCCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcc------------------cccccCCceEEEECCCCCCHH
Confidence 35899999999999999999999999999999987422110 112334589999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcc-------------------------------------
Q 005663 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS------------------------------------- 387 (684)
Q Consensus 345 ~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a------------------------------------- 387 (684)
++|++||+.++.||+.+|++.+.+++|+|.+.+..++.++..+
T Consensus 65 ~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~ 144 (443)
T PRK05201 65 EIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWG 144 (443)
T ss_pred HHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCcc
Confidence 9999999999999999999999999999988888888776655
Q ss_pred ----------------------------------c--c-----h------------------------------------
Q 005663 388 ----------------------------------D--Y-----N------------------------------------ 390 (684)
Q Consensus 388 ----------------------------------~--~-----~------------------------------------ 390 (684)
. . .
T Consensus 145 ~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~ 224 (443)
T PRK05201 145 EEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKI 224 (443)
T ss_pred ccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHH
Confidence 1 0 0
Q ss_pred -------------------HHh-hcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCC
Q 005663 391 -------------------VAA-AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (684)
Q Consensus 391 -------------------v~~-a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~ 450 (684)
++. .+.||||||||||+..+.++ .+.|+++++||+.||++|||..+++
T Consensus 225 l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~---------- 292 (443)
T PRK05201 225 LIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST---------- 292 (443)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee----------
Confidence 222 48899999999999987433 4789999999999999999999875
Q ss_pred CCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcc
Q 005663 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGR 530 (684)
Q Consensus 451 ~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R 530 (684)
+...|+|+||+|||+|+|.. .+|+| ++|||++|
T Consensus 293 -k~~~i~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 325 (443)
T PRK05201 293 -KYGMVKTDHILFIASGAFHV-----------------------------------------SKPSD-----LIPELQGR 325 (443)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 22489999999999999852 12333 67999999
Q ss_pred cceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCC-----CCCChHHHHHHHHHHHHH
Q 005663 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILMD 605 (684)
Q Consensus 531 ~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~-----~~~GAR~Lr~iIe~~l~~ 605 (684)
|++++.+.+|+++++.+|++++.+++.+||+++|+..|+++.||++|++.||+.++. .++|||.|+.++|+++.+
T Consensus 326 ~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d 405 (443)
T PRK05201 326 FPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 405 (443)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred HHhcCCCCcCCCCcccEEEechhccCcc
Q 005663 606 AMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 606 al~e~~~~~~g~~~i~~v~vdee~v~~~ 633 (684)
.++++|+. .+..|+||+++|...
T Consensus 406 ~~Fe~p~~-----~~~~v~I~~~~V~~~ 428 (443)
T PRK05201 406 ISFEAPDM-----SGETVTIDAAYVDEK 428 (443)
T ss_pred HhccCCCC-----CCCEEEECHHHHHHH
Confidence 99999986 357899999988653
No 7
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-37 Score=356.46 Aligned_cols=279 Identities=25% Similarity=0.398 Sum_probs=231.8
Q ss_pred CCCCCCCCCCCCCChHH----HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005663 254 GCWGGSNLGNKFPTPKE----ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~~~~~~~~~~~~----l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (684)
.+|+|+|+.+....+++ +++.|.+.|+||++|++.|..+|. +.++|+.++++|
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIr------------raRaGL~dp~rP----------- 520 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIR------------RARAGLGDPNRP----------- 520 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHH------------HHhcCCCCCCCC-----------
Confidence 57999999876655554 889999999999999999999995 347788887777
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccccc-----------CCccccchHHHHHHHHhcccchHHhhc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
.+++||.||+|+|||.||++||..+. ..++++|||++.+ +||+||+.++.+++...+.|+
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~Py------ 594 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPY------ 594 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCC------
Confidence 37999999999999999999999996 7899999999954 899999999999999988776
Q ss_pred CCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHH
Q 005663 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~ 475 (684)
+||+||||+|.++. |++.||++|| +|.++|+.|+ .||++|+++|||+|... +.+
T Consensus 595 -SViLlDEIEKAHpd--------------V~nilLQVlD--------dGrLTD~~Gr--~VdFrNtiIImTSN~Gs-~~i 648 (786)
T COG0542 595 -SVILLDEIEKAHPD--------------VFNLLLQVLD--------DGRLTDGQGR--TVDFRNTIIIMTSNAGS-EEI 648 (786)
T ss_pred -eEEEechhhhcCHH--------------HHHHHHHHhc--------CCeeecCCCC--EEecceeEEEEecccch-HHH
Confidence 89999999999998 9999999999 6788888887 89999999999998532 111
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH
Q 005663 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
... .++ .....++...+.++. .+++.|+|||++|+|.+|.|.+|+.+++.+|+...++.
T Consensus 649 ~~~------~~~---------~~~~~~~~~~~~v~~------~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 649 LRD------ADG---------DDFADKEALKEAVME------ELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred Hhh------ccc---------cccchhhhHHHHHHH------HHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 111 010 000112222333333 45568999999999999999999999999999987777
Q ss_pred HHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005663 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 556 L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+.++ +..+++.+.+++++.++|++++|++.+|||+|+++|++.+.+.+.+..-
T Consensus 708 l~~~----L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL 760 (786)
T COG0542 708 LAKR----LAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEIL 760 (786)
T ss_pred HHHH----HHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHH
Confidence 6554 5567899999999999999999999999999999999999999886543
No 8
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-36 Score=315.14 Aligned_cols=287 Identities=45% Similarity=0.714 Sum_probs=245.5
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005663 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT 344 (684)
..+|+++..+||++||||++||+.+..++.|.|+|.+-...- ..++-|.|+|++||+|+|||
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~l------------------r~EV~PKNILMIGpTGVGKT 64 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEEL------------------RDEVTPKNILMIGPTGVGKT 64 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHH------------------hhccCccceEEECCCCCcHH
Confidence 468999999999999999999999999999999986543221 12345689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhccc-----------------------------c------
Q 005663 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD-----------------------------Y------ 389 (684)
Q Consensus 345 ~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~-----------------------------~------ 389 (684)
.+||.||+..+.||+.+.++.+++.||+|.+++++++.+...+- .
T Consensus 65 EIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g 144 (444)
T COG1220 65 EIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWG 144 (444)
T ss_pred HHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 99999999999999999999999999999999999988765320 0
Q ss_pred ------h-------------------------------------------------------------------------
Q 005663 390 ------N------------------------------------------------------------------------- 390 (684)
Q Consensus 390 ------~------------------------------------------------------------------------- 390 (684)
.
T Consensus 145 ~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~ 224 (444)
T COG1220 145 QSENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKK 224 (444)
T ss_pred cCcccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHH
Confidence 0
Q ss_pred ---------------------HHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCC
Q 005663 391 ---------------------VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (684)
Q Consensus 391 ---------------------v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~ 449 (684)
-...+.||||||||||++.+.+ ++++|+++|+||.-||.++||..|.- .
T Consensus 225 ~L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T--------K 294 (444)
T COG1220 225 LLIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST--------K 294 (444)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeec--------c
Confidence 0133579999999999998744 33449999999999999999988752 1
Q ss_pred CCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhc
Q 005663 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVG 529 (684)
Q Consensus 450 ~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~ 529 (684)
.| .|.|.+++||.+|+|.= .+|.| ++|||-+
T Consensus 295 yG---~VkTdHILFIasGAFh~-----------------------------------------sKPSD-----LiPELQG 325 (444)
T COG1220 295 YG---PVKTDHILFIASGAFHV-----------------------------------------AKPSD-----LIPELQG 325 (444)
T ss_pred cc---ccccceEEEEecCceec-----------------------------------------CChhh-----cChhhcC
Confidence 22 68899999999999741 12333 6899999
Q ss_pred ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCC-----CCCChHHHHHHHHHHHH
Q 005663 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILM 604 (684)
Q Consensus 530 R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~-----~~~GAR~Lr~iIe~~l~ 604 (684)
||++-|.+.+|+.+|+.+|++++.++|.+||+.+++..++.+.|+++|++.||+.+|. .|.|||-|..++|+++.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLe 405 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLE 405 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999884 78899999999999999
Q ss_pred HHHhcCCCCcCCCCcccEEEechhccCcc
Q 005663 605 DAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 605 ~al~e~~~~~~g~~~i~~v~vdee~v~~~ 633 (684)
+..+++|+.. -..+.||.+.|...
T Consensus 406 diSFeA~d~~-----g~~v~Id~~yV~~~ 429 (444)
T COG1220 406 DISFEAPDMS-----GQKVTIDAEYVEEK 429 (444)
T ss_pred HhCccCCcCC-----CCeEEEcHHHHHHH
Confidence 9999999875 25789998887753
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.98 E-value=1.2e-31 Score=313.62 Aligned_cols=275 Identities=21% Similarity=0.332 Sum_probs=215.1
Q ss_pred CCCCCCCCCCCCCC----hHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005663 254 GCWGGSNLGNKFPT----PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~~~~~~~~~----~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (684)
.+|+|+|+.....+ ...+++.|.+.|+||++|++.|..++..+ .+++..+.+|
T Consensus 431 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~------------~~gl~~~~kp----------- 487 (758)
T PRK11034 431 ARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMS------------RAGLGHEHKP----------- 487 (758)
T ss_pred HHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHH------------hccccCCCCC-----------
Confidence 57999998764433 34588999999999999999999999622 2233332222
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-----------CCccccchHHHHHHHHhcccchHHhhcCCE
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
..++||+||||||||++|+++|+.++.+|+.+||+++.+ +||+|++.+..+.+.+... +.+|
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~-------p~sV 560 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH-------PHAV 560 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhC-------CCcE
Confidence 378999999999999999999999999999999998753 5788887666676665543 4589
Q ss_pred EEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHh
Q 005663 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 399 LfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~ 478 (684)
|||||||++++. +|+.||++||+ |.+++..++ .++++|++||+|+|. +.+.+.
T Consensus 561 lllDEieka~~~--------------v~~~LLq~ld~--------G~ltd~~g~--~vd~rn~iiI~TsN~-g~~~~~-- 613 (758)
T PRK11034 561 LLLDEIEKAHPD--------------VFNLLLQVMDN--------GTLTDNNGR--KADFRNVVLVMTTNA-GVRETE-- 613 (758)
T ss_pred EEeccHhhhhHH--------------HHHHHHHHHhc--------CeeecCCCc--eecCCCcEEEEeCCc-CHHHHh--
Confidence 999999999987 99999999993 333444443 789999999999984 344332
Q ss_pred ccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHH
Q 005663 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (684)
Q Consensus 479 r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~k 558 (684)
+..+||..... ....+ +.+++.|.|||++|+|.+|.|++|+.+++.+|+...+..+
T Consensus 614 ---~~~~g~~~~~~-------------~~~~~------~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~-- 669 (758)
T PRK11034 614 ---RKSIGLIHQDN-------------STDAM------EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL-- 669 (758)
T ss_pred ---hcccCcccchh-------------hHHHH------HHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHH--
Confidence 23467642110 01111 2345689999999999999999999999999998765554
Q ss_pred HHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005663 559 QYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 559 qy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
.+.+..+++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+.+..
T Consensus 670 --~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 670 --QAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred --HHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999999999999988653
No 10
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=2.2e-30 Score=307.54 Aligned_cols=288 Identities=25% Similarity=0.357 Sum_probs=220.6
Q ss_pred CCCCCCCCCCCCCC----hHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005663 254 GCWGGSNLGNKFPT----PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~~~~~~~~~----~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (684)
..|+|+|+...... ...+++.|.+.|+||++|++.|..++... ++++..+.+|
T Consensus 482 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~------------~~gl~~~~~p----------- 538 (821)
T CHL00095 482 SAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA------------RVGLKNPNRP----------- 538 (821)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH------------hhcccCCCCC-----------
Confidence 57999999765544 33599999999999999999999998622 2233333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc-----------cCCccccchHHHHHHHHhcccchHHhhc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||+||||||||++|++||+.+ ..+++.+|++++. ++||+|++....+.+.+...+
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p------- 611 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKP------- 611 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCC-------
Confidence 3678999999999999999999998 3679999999873 368999987777777766554
Q ss_pred CCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHH
Q 005663 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~ 475 (684)
.+||+|||||++++. +++.||++|| +|.+++..++ .++++|++||||+|... +.
T Consensus 612 ~~VvllDeieka~~~--------------v~~~Llq~le--------~g~~~d~~g~--~v~~~~~i~I~Tsn~g~--~~ 665 (821)
T CHL00095 612 YTVVLFDEIEKAHPD--------------IFNLLLQILD--------DGRLTDSKGR--TIDFKNTLIIMTSNLGS--KV 665 (821)
T ss_pred CeEEEECChhhCCHH--------------HHHHHHHHhc--------cCceecCCCc--EEecCceEEEEeCCcch--HH
Confidence 389999999999988 9999999999 3444555554 78999999999999643 22
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH
Q 005663 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
+.. ....+||....... ....+. .+.+.+. +.++..|+|||++|+|.+|.|.||+.+++.+|+...++.
T Consensus 666 i~~--~~~~~gf~~~~~~~---~~~~~~----~~~~~~~--~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 666 IET--NSGGLGFELSENQL---SEKQYK----RLSNLVN--EELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HHh--hccccCCccccccc---ccccHH----HHHHHHH--HHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 221 22467886432110 000111 1222221 234556999999999999999999999999999987776
Q ss_pred HHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005663 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 556 L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+.++ +..+++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+++..-
T Consensus 735 l~~r----l~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l 787 (821)
T CHL00095 735 LFKR----LNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVL 787 (821)
T ss_pred HHHH----HHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 6555 4556899999999999999999999999999999999999998886543
No 11
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=3.8e-30 Score=302.34 Aligned_cols=276 Identities=23% Similarity=0.350 Sum_probs=214.4
Q ss_pred CCCCCCCCCCC----CCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005663 254 GCWGGSNLGNK----FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~~~~~~----~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (684)
..|+|+|+... .....++++.|.+.|+||++|++.|..++. +. +++..++.+|
T Consensus 427 ~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~----~~--------~~g~~~~~~p----------- 483 (731)
T TIGR02639 427 AKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIK----RS--------RAGLGNPNKP----------- 483 (731)
T ss_pred HHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHH----HH--------hcCCCCCCCC-----------
Confidence 45899987653 334556999999999999999999998885 11 2233333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-----------CCccccchHHHHHHHHhcccchHHhhcCCE
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
..++||+||||||||++|++||+.++.+++.+||+++.+ +||+|++.+..+.+.+... +.+|
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~-------p~~V 556 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKH-------PHCV 556 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhC-------CCeE
Confidence 367999999999999999999999999999999998743 7899988777777766554 4489
Q ss_pred EEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHh
Q 005663 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 399 LfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~ 478 (684)
|+|||||++++. +++.||++||+ |.+++..++ .+|++|++||+|+|... +.+
T Consensus 557 vllDEieka~~~--------------~~~~Ll~~ld~--------g~~~d~~g~--~vd~~~~iii~Tsn~g~-~~~--- 608 (731)
T TIGR02639 557 LLLDEIEKAHPD--------------IYNILLQVMDY--------ATLTDNNGR--KADFRNVILIMTSNAGA-SEM--- 608 (731)
T ss_pred EEEechhhcCHH--------------HHHHHHHhhcc--------CeeecCCCc--ccCCCCCEEEECCCcch-hhh---
Confidence 999999999988 99999999993 344454443 78999999999998532 111
Q ss_pred ccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHH
Q 005663 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (684)
Q Consensus 479 r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~k 558 (684)
.+..+||.... ....+ .+.++..|.|||++|||.+|.|.||+.+++.+|+...++.+.+
T Consensus 609 --~~~~~~f~~~~-------------~~~~~------~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~ 667 (731)
T TIGR02639 609 --SKPPIGFGSEN-------------VESKS------DKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSK 667 (731)
T ss_pred --hhccCCcchhh-------------hHHHH------HHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 12235664211 00111 2345567999999999999999999999999999987665544
Q ss_pred HHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005663 559 QYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 559 qy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
.+...++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+.+..-
T Consensus 668 ----~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l 717 (731)
T TIGR02639 668 ----QLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEIL 717 (731)
T ss_pred ----HHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999876543
No 12
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=2.8e-29 Score=298.05 Aligned_cols=279 Identities=20% Similarity=0.351 Sum_probs=213.0
Q ss_pred CCCCCCCCCCCCCC----hHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005663 254 GCWGGSNLGNKFPT----PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~~~~~~~~~----~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (684)
.+|+|+|+.+...+ +..+++.|.+.|+||+.|++.|..++. + .++++.++.+|
T Consensus 539 ~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~----~--------~~~gl~~~~~p----------- 595 (852)
T TIGR03345 539 ADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIR----T--------ARAGLEDPRKP----------- 595 (852)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHH----H--------HhcCCCCCCCC-----------
Confidence 36999999765443 445999999999999999999999995 2 12334443333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc-----------CCccccchHHHHHHHHhcccchHHhhc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||+||||||||.+|++||+.+ ...++.+||+++.+ +||+|++.++.+.+.+... +
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~-------p 668 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRK-------P 668 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhC-------C
Confidence 3578999999999999999999999 45789999998742 6899998777777766654 4
Q ss_pred CCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHH
Q 005663 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~ 475 (684)
.+||+||||+++++. +++.|+++|+ +|.+++..|+ .||++|++||||+|... +.+
T Consensus 669 ~svvllDEieka~~~--------------v~~~Llq~ld--------~g~l~d~~Gr--~vd~~n~iiI~TSNlg~-~~~ 723 (852)
T TIGR03345 669 YSVVLLDEVEKAHPD--------------VLELFYQVFD--------KGVMEDGEGR--EIDFKNTVILLTSNAGS-DLI 723 (852)
T ss_pred CcEEEEechhhcCHH--------------HHHHHHHHhh--------cceeecCCCc--EEeccccEEEEeCCCch-HHH
Confidence 589999999999987 9999999999 4555566665 79999999999988532 222
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH
Q 005663 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
.... .++.. ....+.....++ +.++..|.|||++|++ +|.|.+|+.+++.+|+...++.
T Consensus 724 ~~~~-----~~~~~---------~~~~~~~~~~~~------~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 724 MALC-----ADPET---------APDPEALLEALR------PELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred HHhc-----cCccc---------CcchHHHHHHHH------HHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 2111 00000 001111112222 2345579999999997 8999999999999999998877
Q ss_pred HHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005663 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 556 L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.+++.. ..++.+.++++++++|++.+|+..+|||+|+++|++.+.+++.+..
T Consensus 783 l~~rl~~---~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 783 IARRLKE---NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHH---hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 7666433 2378999999999999999999999999999999999999888653
No 13
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=1.2e-27 Score=285.32 Aligned_cols=275 Identities=24% Similarity=0.370 Sum_probs=209.0
Q ss_pred CCCCCCCCCCCCCC----hHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005663 254 GCWGGSNLGNKFPT----PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~~~~~~~~~----~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (684)
..|+|+|+...... ...+++.|.+.|+||+.|++.|..++. +. ++++.++.+|
T Consensus 538 ~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~----~~--------~~gl~~~~~p----------- 594 (852)
T TIGR03346 538 SRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIR----RS--------RAGLSDPNRP----------- 594 (852)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHH----HH--------hccCCCCCCC-----------
Confidence 47999998764443 334888999999999999999999986 21 2333333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc-----------cCCccccchHHHHHHHHhcccchHHhhc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||+||||||||++|++||+.+ +.+++.+||+++. +++|+|++....+.+.+...+
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p------- 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKP------- 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCC-------
Confidence 3689999999999999999999988 4689999998773 267888876666766665544
Q ss_pred CCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHH
Q 005663 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~ 475 (684)
.+|||||||+++++. +|+.||++|| +|.+++..+ ..++++|++||+|+|... +.+
T Consensus 668 ~~vlllDeieka~~~--------------v~~~Ll~~l~--------~g~l~d~~g--~~vd~rn~iiI~TSn~g~-~~~ 722 (852)
T TIGR03346 668 YSVVLFDEVEKAHPD--------------VFNVLLQVLD--------DGRLTDGQG--RTVDFRNTVIIMTSNLGS-QFI 722 (852)
T ss_pred CcEEEEeccccCCHH--------------HHHHHHHHHh--------cCceecCCC--eEEecCCcEEEEeCCcch-HhH
Confidence 379999999999988 9999999998 344455544 489999999999998532 111
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH
Q 005663 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
.... + ..+++.....++ +.++..|+|||++|||.++.|.|++.+++.+|+...++.
T Consensus 723 ~~~~------~------------~~~~~~~~~~~~------~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 723 QELA------G------------GDDYEEMREAVM------EVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred hhhc------c------------cccHHHHHHHHH------HHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 1100 0 001111111121 234567999999999999999999999999999987766
Q ss_pred HHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005663 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 556 L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.++ +...++.+.++++++++|++++|+..+|||+|+++|++.+.+.+.+..
T Consensus 779 l~~~----l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 779 LRKR----LAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HHHH----HHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 6544 344577899999999999999999999999999999999999887643
No 14
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=1.3e-27 Score=284.33 Aligned_cols=275 Identities=25% Similarity=0.416 Sum_probs=208.3
Q ss_pred CCCCCCCCCCCCCCh----HHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005663 254 GCWGGSNLGNKFPTP----KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~~~~~~~~~~----~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (684)
..|+|+|+.+...+. ..+++.|.+.|+||+.|++.|..++. + .++++.++.+|
T Consensus 541 ~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~----~--------~~~gl~~~~~p----------- 597 (857)
T PRK10865 541 ARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIR----R--------SRAGLSDPNRP----------- 597 (857)
T ss_pred HHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHH----H--------HHhcccCCCCC-----------
Confidence 479999998755543 34899999999999999999999985 2 12333333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc-----------CCccccchHHHHHHHHhcccchHHhhc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
..++||+||||||||++|++||+.+ +.+|+.++|+++.+ ++|+|++.+..+.+.+... +
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~-------p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRR-------P 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhC-------C
Confidence 2579999999999999999999988 45799999988742 5677887666666655443 3
Q ss_pred CCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHH
Q 005663 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~ 475 (684)
.+||+||||+++++. +|+.|+++|| +|.+++..+ ..++++|++||+|+|... + .
T Consensus 671 ~~vLllDEieka~~~--------------v~~~Ll~ile--------~g~l~d~~g--r~vd~rn~iiI~TSN~g~-~-~ 724 (857)
T PRK10865 671 YSVILLDEVEKAHPD--------------VFNILLQVLD--------DGRLTDGQG--RTVDFRNTVVIMTSNLGS-D-L 724 (857)
T ss_pred CCeEEEeehhhCCHH--------------HHHHHHHHHh--------hCceecCCc--eEEeecccEEEEeCCcch-H-H
Confidence 489999999999988 9999999998 344444444 478999999999998632 1 1
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH
Q 005663 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
+..+ +|. .........++ +.++..|.|+|++|+|.++.|.|++.+++.+|+...++.
T Consensus 725 ~~~~-----~~~------------~~~~~~~~~~~------~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 725 IQER-----FGE------------LDYAHMKELVL------GVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HHHh-----ccc------------cchHHHHHHHH------HHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 1111 110 01111111122 234567999999999999999999999999999987766
Q ss_pred HHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005663 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 556 L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.+++ ...++.+.++++++++|++++|+..+|||+|+++|++.+.+.+.+..
T Consensus 782 l~~rl----~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 782 LYKRL----EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred HHHHH----HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 65543 34567889999999999999999999999999999999999887643
No 15
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.94 E-value=4.7e-26 Score=251.62 Aligned_cols=278 Identities=17% Similarity=0.262 Sum_probs=203.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.|+|.+.+...+.+.+. +.+.++ .+||+.|++||||..+|++|.+..
T Consensus 246 ~Iig~S~~m~~~~~~ak--------------r~A~td----------------stVLi~GESGTGKElfA~~IH~~S~R~ 295 (560)
T COG3829 246 DIIGESPAMLRVLELAK--------------RIAKTD----------------STVLILGESGTGKELFARAIHNLSPRA 295 (560)
T ss_pred hhccCCHHHHHHHHHHH--------------hhcCCC----------------CcEEEecCCCccHHHHHHHHHhcCccc
Confidence 48999999988887774 222222 799999999999999999997666
Q ss_pred CCCEEEEeccccc----cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 355 NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~----~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||+.+. ++.++||..++.....-..+++.++.|++|+||||||..|+.. +|.+||
T Consensus 296 ~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKLL 361 (560)
T COG3829 296 NGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKLL 361 (560)
T ss_pred CCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHHH
Confidence 7899999999885 4889999966666555555789999999999999999999998 999999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
++|+++.+. +-+....+.+|.+ +| +++..+|+++|++++||.||+|+.++...
T Consensus 362 RVLQEkei~-------rvG~t~~~~vDVR---II-AATN~nL~~~i~~G~FReDLYYRLNV~~i---------------- 414 (560)
T COG3829 362 RVLQEKEIE-------RVGGTKPIPVDVR---II-AATNRNLEKMIAEGTFREDLYYRLNVIPI---------------- 414 (560)
T ss_pred HHHhhceEE-------ecCCCCceeeEEE---EE-eccCcCHHHHHhcCcchhhheeeeceeee----------------
Confidence 999855443 2233344566644 44 45557999999999887777776665432
Q ss_pred hhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCcee-ecCHHHHHHHHHhcCCCC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRLIAKKAISKN 589 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l-~iteeAl~~La~~a~~~~ 589 (684)
.+|+|+.|- +|+..++..+++.+.+.|.+ .+ .++++++..|.+ |.|+
T Consensus 415 ------------~iPPLReR~-----------eDI~~L~~~Fl~k~s~~~~~-------~v~~ls~~a~~~L~~--y~WP 462 (560)
T COG3829 415 ------------TIPPLRERK-----------EDIPLLAEYFLDKFSRRYGR-------NVKGLSPDALALLLR--YDWP 462 (560)
T ss_pred ------------cCCCcccCc-----------chHHHHHHHHHHHHHHHcCC-------CcccCCHHHHHHHHh--CCCC
Confidence 124444443 67777777655555444433 33 499999999999 7889
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCccc--CC---CcceEEcCCChHHHHHHHhhhhhhhhcc
Q 005663 590 TGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED--RG---CGAKILYGKGALDRYLAQHKRKDLETNV 664 (684)
Q Consensus 590 ~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~--~~---~~~~i~~~~g~l~~~l~~~~~~~~~~~~ 664 (684)
+|+|+|+|+||+++.- . +. .-+|+.+++.... .. .........+.++.+++++|+..|.+.+
T Consensus 463 GNVRELeNviER~v~~--~---~~--------~~~I~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~~~e~~Ek~~I~~aL 529 (560)
T COG3829 463 GNVRELENVIERAVNL--V---ES--------DGLIDADDLPAFALEEKEPRPETTKQIEVGSLKEALEEYEKHLIREAL 529 (560)
T ss_pred chHHHHHHHHHHHHhc--c---CC--------cceeehhhcchhhhcccccCcCcccCcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999998851 1 11 1226666655221 11 1111224677899999999999999999
Q ss_pred ccCCCCC
Q 005663 665 AGADGEP 671 (684)
Q Consensus 665 ~~~~~~~ 671 (684)
++.+++.
T Consensus 530 ~~~~gn~ 536 (560)
T COG3829 530 ERHGGNK 536 (560)
T ss_pred HHhCCCH
Confidence 8888764
No 16
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-25 Score=259.54 Aligned_cols=286 Identities=24% Similarity=0.349 Sum_probs=219.7
Q ss_pred CCCCCCCCCCCCCC----ChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCccccc
Q 005663 253 DGCWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVEL 328 (684)
Q Consensus 253 ~~~~~g~~~~~~~~----~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (684)
...|+|+|+..... ....|.+.|.+.|+||++|+..|..+|. + .+++..++ .
T Consensus 534 ~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~----~--------sr~gl~~~------------~ 589 (898)
T KOG1051|consen 534 VSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIR----R--------SRAGLKDP------------N 589 (898)
T ss_pred hhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHH----h--------hhcccCCC------------C
Confidence 47899999876544 4455999999999999999999999996 1 12233332 1
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccc--------ccCCccccchHHHHHHHHhcccchHHhhcCC
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL--------TQAGYVGEDVESILYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~l--------~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~g 397 (684)
+...+||.||+|+|||.||+++|..+. ..|+.+|++++ .++||+|++....+.+.+.+.++ +
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~-------s 662 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPY-------S 662 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCc-------e
Confidence 247899999999999999999999993 46999999973 34899999999999999888765 8
Q ss_pred EEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHH
Q 005663 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (684)
Q Consensus 398 VLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~ 477 (684)
||+|||||++++. +++.|+++|| .|.++|..|+ .|+++|+|||||+|... ..+.
T Consensus 663 VVLfdeIEkAh~~--------------v~n~llq~lD--------~GrltDs~Gr--~Vd~kN~I~IMTsn~~~--~~i~ 716 (898)
T KOG1051|consen 663 VVLFEEIEKAHPD--------------VLNILLQLLD--------RGRLTDSHGR--EVDFKNAIFIMTSNVGS--SAIA 716 (898)
T ss_pred EEEEechhhcCHH--------------HHHHHHHHHh--------cCccccCCCc--EeeccceEEEEecccch--Hhhh
Confidence 9999999999988 9999999999 6777888887 89999999999988422 1121
Q ss_pred hccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHh----cCCChhhhcccceEEEecccCHHHHHHHHhchH
Q 005663 478 ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIA----YGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 478 ~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~----~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l 553 (684)
.... ..++-.... .....+. ..+....+.++ +.|+|||++|++.++.|.+++.+++.+|+...+
T Consensus 717 ~~~~--~~~~l~~~~----~~~~~~~------~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 717 NDAS--LEEKLLDMD----EKRGSYR------LKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred cccc--cccccccch----hhhhhhh------hhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHH
Confidence 1110 011100000 0000000 11122234555 789999999999999999999999999999877
Q ss_pred HHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005663 554 NALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 554 ~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
.++.+.+.. .+....+++.+...+...+|+..+|||.|++.|++.+.+.+....
T Consensus 785 ~e~~~r~~~----~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~ 838 (898)
T KOG1051|consen 785 TEIEKRLEE----RELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEAL 838 (898)
T ss_pred HHHHHHhhh----hHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhh
Confidence 777555543 335677999999999999999999999999999999999987654
No 17
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=6.9e-25 Score=239.68 Aligned_cols=282 Identities=18% Similarity=0.287 Sum_probs=203.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.|||++.|..++.+.|. .++.++ .+|||.|++||||..+||+|.+..
T Consensus 224 ~iIG~S~am~~ll~~i~--------------~VA~Sd----------------~tVLi~GETGtGKElvAraIH~~S~R~ 273 (550)
T COG3604 224 GIIGRSPAMRQLLKEIE--------------VVAKSD----------------STVLIRGETGTGKELVARAIHQLSPRR 273 (550)
T ss_pred cceecCHHHHHHHHHHH--------------HHhcCC----------------CeEEEecCCCccHHHHHHHHHhhCccc
Confidence 48999999999999885 333333 899999999999999999998877
Q ss_pred CCCEEEEeccccc----cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 355 NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~----~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||+.+. ++..+|+. .+.++..+....+.++.|.+|+||||||..|+.+ +|.+||
T Consensus 274 ~kPfV~~NCAAlPesLlESELFGHe-KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLL 338 (550)
T COG3604 274 DKPFVKLNCAALPESLLESELFGHE-KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLL 338 (550)
T ss_pred CCCceeeeccccchHHHHHHHhccc-ccccccchhccCcceeecCCCeEechhhccCCHH--------------HHHHHH
Confidence 6799999999885 48899998 5566667777788999999999999999999999 999999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
++|+.+.+. +-+..+.+.||.+- | +++..||++++.++.|+.|++|+.++...
T Consensus 339 RvLQegEie-------RvG~~r~ikVDVRi---I-AATNRDL~~~V~~G~FRaDLYyRLsV~Pl---------------- 391 (550)
T COG3604 339 RVLQEGEIE-------RVGGDRTIKVDVRV---I-AATNRDLEEMVRDGEFRADLYYRLSVFPL---------------- 391 (550)
T ss_pred HHHhhccee-------ecCCCceeEEEEEE---E-eccchhHHHHHHcCcchhhhhhccccccc----------------
Confidence 999844442 33556677887544 4 45567999999999877777766655432
Q ss_pred hhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCc-eeecCHHHHHHHHHhcCCCC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV-KLHFTENALRLIAKKAISKN 589 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv-~l~iteeAl~~La~~a~~~~ 589 (684)
+.|+|+.|= +|+.-++..++. ++... .|. .+.++++|++.|.+ |.|+
T Consensus 392 ------------~lPPLRER~-----------~DIplLA~~Fle----~~~~~---~gr~~l~ls~~Al~~L~~--y~wP 439 (550)
T COG3604 392 ------------ELPPLRERP-----------EDIPLLAGYFLE----KFRRR---LGRAILSLSAEALELLSS--YEWP 439 (550)
T ss_pred ------------CCCCcccCC-----------ccHHHHHHHHHH----HHHHh---cCCcccccCHHHHHHHHc--CCCC
Confidence 124444443 455556655433 33332 243 78899999999999 7899
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccC--------cccCC-CcceEEcCCChHHHHHHHhhhhhh
Q 005663 590 TGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVG--------SEDRG-CGAKILYGKGALDRYLAQHKRKDL 660 (684)
Q Consensus 590 ~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~--------~~~~~-~~~~i~~~~g~l~~~l~~~~~~~~ 660 (684)
+|+|+|+++|++++.-+ ....... ++ ...+.+.. ...+. +........-.+..-..+.+++-|
T Consensus 440 GNVRELen~veRavlla-~~~~~~~----d~---~~l~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~l~~~~~~~eR~~I 511 (550)
T COG3604 440 GNVRELENVVERAVLLA-GRLTRRG----DL---CTLELSLSALLWKTLPAPEPSALPEPALPGEHTLREATEEFERQLI 511 (550)
T ss_pred CcHHHHHHHHHHHHHHh-cccCCCc----ce---eehhhhhhccccccCCCCCccccCCccCCCcccchhhhHHHHHHHH
Confidence 99999999999999877 5544432 11 22222211 10010 001111123367788889999999
Q ss_pred hhccccCCCCC
Q 005663 661 ETNVAGADGEP 671 (684)
Q Consensus 661 ~~~~~~~~~~~ 671 (684)
.+.+++++++.
T Consensus 512 ~~aL~~~~~~~ 522 (550)
T COG3604 512 IAALEETNGNW 522 (550)
T ss_pred HHHHHHhCCcH
Confidence 99998888874
No 18
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.3e-24 Score=241.08 Aligned_cols=247 Identities=22% Similarity=0.308 Sum_probs=202.7
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005663 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGK 343 (684)
...+.+..++.||+...|.+++|+.+.+.+.-.-. .. ++...-++|+||||+||
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l-----~~---------------------~~kGpILcLVGPPGVGK 363 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKL-----TK---------------------KLKGPILCLVGPPGVGK 363 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHH-----hc---------------------cCCCcEEEEECCCCCCc
Confidence 45667778999999999999999999998851111 00 01125778999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccccc--------CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccc
Q 005663 344 TLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 344 T~LAkaLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~ 415 (684)
|+|++.||+.++.+|++++...+.+ ..|+|...++.++.+.... ..+.+++||||||+..+
T Consensus 364 TSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~------~~NPv~LLDEIDKm~ss----- 432 (782)
T COG0466 364 TSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG------VKNPVFLLDEIDKMGSS----- 432 (782)
T ss_pred hhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhC------CcCCeEEeechhhccCC-----
Confidence 9999999999999999999988854 4599999888888876554 35689999999999765
Q ss_pred cCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccccc
Q 005663 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~ 495 (684)
..+| ..++||++|| |+++..+.+.+-.+.+|.++++||+|+|.-+
T Consensus 433 ~rGD-----PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~------------------------ 477 (782)
T COG0466 433 FRGD-----PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLD------------------------ 477 (782)
T ss_pred CCCC-----hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccc------------------------
Confidence 2234 8899999999 8888888888888899999999999998421
Q ss_pred ccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCH
Q 005663 496 RAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ite 575 (684)
.++.+|+.|+. +|.+..|+++|..+|++.+ |..+..+.......++.|++
T Consensus 478 --------------------------tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~---LiPk~~~~~gL~~~el~i~d 527 (782)
T COG0466 478 --------------------------TIPAPLLDRME-VIRLSGYTEDEKLEIAKRH---LIPKQLKEHGLKKGELTITD 527 (782)
T ss_pred --------------------------cCChHHhccee-eeeecCCChHHHHHHHHHh---cchHHHHHcCCCccceeecH
Confidence 35788999998 7999999999999999985 33333333455556899999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005663 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+|+..|.++ |+...|+|+|++.|.++++.+..++...
T Consensus 528 ~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~~~ 564 (782)
T COG0466 528 EAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKILLK 564 (782)
T ss_pred HHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 999999998 9999999999999999999998887664
No 19
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.91 E-value=2.5e-24 Score=237.84 Aligned_cols=285 Identities=17% Similarity=0.259 Sum_probs=195.1
Q ss_pred cccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-
Q 005663 276 DKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (684)
Q Consensus 276 d~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l- 354 (684)
...++|+..++++|...+. +++.++ .+||+.|++||||.++|++|.+..
T Consensus 140 ~~~liG~S~am~~l~~~i~--------------kvA~s~----------------a~VLI~GESGtGKElvAr~IH~~S~ 189 (464)
T COG2204 140 GGELVGESPAMQQLRRLIA--------------KVAPSD----------------ASVLITGESGTGKELVARAIHQASP 189 (464)
T ss_pred cCCceecCHHHHHHHHHHH--------------HHhCCC----------------CCEEEECCCCCcHHHHHHHHHhhCc
Confidence 4468999999999998885 333333 799999999999999999997776
Q ss_pred --CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHH
Q 005663 355 --NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 355 --~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~ 428 (684)
+.||+.+||..+.+ +.++|++. +.++.......+.++.+.+|+||||||..|+.. +|..
T Consensus 190 R~~~PFVavNcaAip~~l~ESELFGhek-GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~k 254 (464)
T COG2204 190 RAKGPFIAVNCAAIPENLLESELFGHEK-GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQVK 254 (464)
T ss_pred ccCCCceeeecccCCHHHHHHHhhcccc-cCcCCcccccCcceeEcCCceEEeeccccCCHH--------------HHHH
Confidence 56999999998864 67888874 444455555667899999999999999999998 9999
Q ss_pred HHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhh
Q 005663 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ 508 (684)
||++|+.+.+. +-+..+.+.+| +-+|+ ++..||++.+++++|+.+|+|+.++.
T Consensus 255 LLRvLqe~~~~-------rvG~~~~i~vd---vRiIa-aT~~dL~~~v~~G~FReDLyyRLnV~---------------- 307 (464)
T COG2204 255 LLRVLQEREFE-------RVGGNKPIKVD---VRIIA-ATNRDLEEEVAAGRFREDLYYRLNVV---------------- 307 (464)
T ss_pred HHHHHHcCeeE-------ecCCCccccee---eEEEe-ecCcCHHHHHHcCCcHHHHHhhhccc----------------
Confidence 99999844443 22334445565 44454 45578999998886655555544433
Q ss_pred hhhhccchhHHhcCCChhhhcccceEEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcC
Q 005663 509 LMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 509 ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~ 586 (684)
.|.++||.+ ||+.-++..++..+.++ ... ....|+++|++.|.. |
T Consensus 308 -------------------------~i~iPpLRER~EDIp~L~~hfl~~~~~~----~~~--~~~~~s~~a~~~L~~--y 354 (464)
T COG2204 308 -------------------------PLRLPPLRERKEDIPLLAEHFLKRFAAE----LGR--PPKGFSPEALAALLA--Y 354 (464)
T ss_pred -------------------------eecCCcccccchhHHHHHHHHHHHHHHH----cCC--CCCCCCHHHHHHHHh--C
Confidence 245555555 67777887755444333 321 256799999999999 7
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCcccCCCcceEEcCCChHHHHHHHhhhhhhhhcccc
Q 005663 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKDLETNVAG 666 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~~~~~~~i~~~~g~l~~~l~~~~~~~~~~~~~~ 666 (684)
+|++|+|+|+|++|+++.-.-.+..+.. .+.......... ......+...... ..+...++++|++.|...+..
T Consensus 355 ~WPGNVREL~N~ver~~il~~~~~i~~~----~l~~~~~~~~~~-~~~~~~~~~~~~~-~~l~~~~~~~Er~~I~~aL~~ 428 (464)
T COG2204 355 DWPGNVRELENVVERAVILSEGPEIEVE----DLPLEILAPAAE-ALAGPAGEAALPG-LPLGEALAEVERQLILQALER 428 (464)
T ss_pred CCChHHHHHHHHHHHHHhcCCccccchh----hccccccccccc-ccccccccccccc-ccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998864422211110 000000000000 0000000000001 458999999999999999988
Q ss_pred CCCCC
Q 005663 667 ADGEP 671 (684)
Q Consensus 667 ~~~~~ 671 (684)
.+|+.
T Consensus 429 ~~g~~ 433 (464)
T COG2204 429 TGGNK 433 (464)
T ss_pred hCCCH
Confidence 88874
No 20
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-23 Score=235.89 Aligned_cols=247 Identities=24% Similarity=0.343 Sum_probs=203.8
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005663 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGK 343 (684)
+..+....++.||+...|.+++|+.+.+.+.-.-. .+.. ....++|+||||+||
T Consensus 398 En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kL--------------rgs~------------qGkIlCf~GPPGVGK 451 (906)
T KOG2004|consen 398 ENLDLARAKEILDEDHYGMEDVKERILEFIAVGKL--------------RGSV------------QGKILCFVGPPGVGK 451 (906)
T ss_pred hhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhh--------------cccC------------CCcEEEEeCCCCCCc
Confidence 34556668889999999999999999998851111 1111 126778999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccccc--------CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccc
Q 005663 344 TLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 344 T~LAkaLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~ 415 (684)
|++||.||+.+|..|++++...+++ ..|+|...++++..+.... ..+.+++||||||+...
T Consensus 452 TSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~------t~NPliLiDEvDKlG~g----- 520 (906)
T KOG2004|consen 452 TSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVK------TENPLILIDEVDKLGSG----- 520 (906)
T ss_pred ccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhC------CCCceEEeehhhhhCCC-----
Confidence 9999999999999999999887754 4599999999888876554 35689999999999732
Q ss_pred cCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccccc
Q 005663 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~ 495 (684)
.++| ..++||++|| |+++..+.+.+-.+.+|.+.++||||+|..+
T Consensus 521 ~qGD-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~id------------------------ 565 (906)
T KOG2004|consen 521 HQGD-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVID------------------------ 565 (906)
T ss_pred CCCC-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccc------------------------
Confidence 3345 8899999999 8899989888888999999999999998432
Q ss_pred ccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCH
Q 005663 496 RAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ite 575 (684)
.++|+|+.|+. +|.+..|..+|..+|+..+ |..+..+......-.+.+++
T Consensus 566 --------------------------tIP~pLlDRME-vIelsGYv~eEKv~IA~~y---Lip~a~~~~gl~~e~v~is~ 615 (906)
T KOG2004|consen 566 --------------------------TIPPPLLDRME-VIELSGYVAEEKVKIAERY---LIPQALKDCGLKPEQVKISD 615 (906)
T ss_pred --------------------------cCChhhhhhhh-eeeccCccHHHHHHHHHHh---hhhHHHHHcCCCHHhcCccH
Confidence 36799999998 7999999999999999974 55665555555556788999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005663 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+|+..|.++ |....|+|+|++-|++++..+...+.+.
T Consensus 616 ~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~vv~~ 652 (906)
T KOG2004|consen 616 DALLALIER-YCREAGVRNLQKQIEKICRKVALKVVEG 652 (906)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999997 9999999999999999999988776554
No 21
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.90 E-value=7.7e-23 Score=215.75 Aligned_cols=239 Identities=19% Similarity=0.250 Sum_probs=171.8
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhh-hhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCc
Q 005663 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (684)
Q Consensus 264 ~~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTG 342 (684)
+....+++.++|++.++|++.+|++|.+.+... +.+.+. ..|.... .+..++||+||||||
T Consensus 9 ~~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~------~~g~~~~------------~~~~~vll~G~pGTG 70 (284)
T TIGR02880 9 EASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQ------RLGLASA------------APTLHMSFTGNPGTG 70 (284)
T ss_pred hhccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH------HhCCCcC------------CCCceEEEEcCCCCC
Confidence 455678899999988899999999998877521 111111 1222211 123689999999999
Q ss_pred HHHHHHHHHHHhC-------CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccc
Q 005663 343 KTLLAKTLARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 343 KT~LAkaLA~~l~-------~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~ 415 (684)
||++|+++|+.+. .+|+.+++.++. ..|+|+. ...+..++.. +.+||||||||+.+...+.
T Consensus 71 KT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~-~~~~g~~-~~~~~~~~~~-------a~~gvL~iDEi~~L~~~~~--- 138 (284)
T TIGR02880 71 KTTVALRMAQILHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEILKR-------AMGGVLFIDEAYYLYRPDN--- 138 (284)
T ss_pred HHHHHHHHHHHHHHcCCcccceEEEecHHHHh-Hhhcccc-hHHHHHHHHH-------ccCcEEEEechhhhccCCC---
Confidence 9999999998873 379999998887 4688876 3445555544 4569999999999864321
Q ss_pred cCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccccc
Q 005663 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~ 495 (684)
. ...+..+++.|++.||.. ..++++|++|+...++.+.
T Consensus 139 -~-~~~~~~~~~~Ll~~le~~---------------------~~~~~vI~a~~~~~~~~~~------------------- 176 (284)
T TIGR02880 139 -E-RDYGQEAIEILLQVMENQ---------------------RDDLVVILAGYKDRMDSFF------------------- 176 (284)
T ss_pred -c-cchHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH-------------------
Confidence 1 123345899999999821 1346778777633222111
Q ss_pred ccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCH
Q 005663 496 RAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ite 575 (684)
.+.|+|.+||+..|.|++|+.+|+..|+...+... ...+++
T Consensus 177 --------------------------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~-------------~~~l~~ 217 (284)
T TIGR02880 177 --------------------------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ-------------QYRFSA 217 (284)
T ss_pred --------------------------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh-------------ccccCH
Confidence 24699999999999999999999999998754332 345788
Q ss_pred HHHHHHHHh-----cCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005663 576 NALRLIAKK-----AISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 576 eAl~~La~~-----a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+++..+.++ ..+|.+|+|+|++++++++......+...
T Consensus 218 ~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 218 EAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888774 22788889999999999999988776554
No 22
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.89 E-value=4.1e-22 Score=234.95 Aligned_cols=258 Identities=18% Similarity=0.281 Sum_probs=190.7
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005663 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGK 343 (684)
...+..+.++.|++.++|++++|+.+.+.+...... .. .....++|+||||+||
T Consensus 309 ~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~--------------~~------------~~g~~i~l~GppG~GK 362 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV--------------NK------------IKGPILCLVGPPGVGK 362 (784)
T ss_pred ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc--------------cc------------CCCceEEEECCCCCCH
Confidence 446777899999999999999999999877511110 00 0125789999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccccc--------CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccc
Q 005663 344 TLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 344 T~LAkaLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~ 415 (684)
|++|+.+|+.++.+|++++++...+ ..|.|...+..+..+ ..+. ..+.||+|||||++....
T Consensus 363 Ttl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l-~~~~-----~~~~villDEidk~~~~~---- 432 (784)
T PRK10787 363 TSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKM-AKVG-----VKNPLFLLDEIDKMSSDM---- 432 (784)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHH-HhcC-----CCCCEEEEEChhhccccc----
Confidence 9999999999999999999887643 246666644444433 2222 245799999999998651
Q ss_pred cCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccccc
Q 005663 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~ 495 (684)
.+| .+++|+++|| |++.....+.+-.+.+|.++++||+|+|..
T Consensus 433 -~g~-----~~~aLlevld------~~~~~~~~d~~~~~~~dls~v~~i~TaN~~------------------------- 475 (784)
T PRK10787 433 -RGD-----PASALLEVLD------PEQNVAFSDHYLEVDYDLSDVMFVATSNSM------------------------- 475 (784)
T ss_pred -CCC-----HHHHHHHHhc------cccEEEEecccccccccCCceEEEEcCCCC-------------------------
Confidence 112 7899999998 222222333333457899999999988731
Q ss_pred ccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCH
Q 005663 496 RAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ite 575 (684)
.++|+|++|+. +|.|.+|+.+++.+|++.++. .++..+ ....+..+.+++
T Consensus 476 --------------------------~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~--~k~~~~-~~l~~~~l~i~~ 525 (784)
T PRK10787 476 --------------------------NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL--PKQIER-NALKKGELTVDD 525 (784)
T ss_pred --------------------------CCCHHHhccee-eeecCCCCHHHHHHHHHHhhh--HHHHHH-hCCCCCeEEECH
Confidence 25799999996 799999999999999998652 133322 344556899999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhc
Q 005663 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEA 629 (684)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~ 629 (684)
+++++|++ +|+..+|||+|++.|++++...+.++...+ .+..+.|+.+.
T Consensus 526 ~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~----~~~~v~v~~~~ 574 (784)
T PRK10787 526 SAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLDK----SLKHIEINGDN 574 (784)
T ss_pred HHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhcC----CCceeeecHHH
Confidence 99999998 799999999999999999999988765432 23456666554
No 23
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=2.3e-22 Score=212.44 Aligned_cols=238 Identities=21% Similarity=0.252 Sum_probs=166.3
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhh-hhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005663 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 265 ~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGK 343 (684)
....+++.+.|++.++|++.+|++|.+.+... +.+++ ...+...+. +..++||+|||||||
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~------~~~g~~~~~------------~~~~ill~G~pGtGK 72 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLR------KNLGLTSSN------------PGLHMSFTGSPGTGK 72 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH------HHcCCCCCC------------CCceEEEECCCCCCH
Confidence 44567799999988999999999999877421 11111 122222211 126899999999999
Q ss_pred HHHHHHHHHHhC-------CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccccc
Q 005663 344 TLLAKTLARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 344 T~LAkaLA~~l~-------~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~ 416 (684)
|++|+++|+.+. .+++.++++++. ..|+|+. ...+..++.. +.+|||||||++.+...+.
T Consensus 73 T~lAr~la~~~~~~g~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~l~~-------a~ggVLfIDE~~~l~~~~~---- 139 (287)
T CHL00181 73 TTVALKMADILYKLGYIKKGHLLTVTRDDLV-GQYIGHT-APKTKEVLKK-------AMGGVLFIDEAYYLYKPDN---- 139 (287)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEecHHHHH-HHHhccc-hHHHHHHHHH-------ccCCEEEEEccchhccCCC----
Confidence 999999998862 368999988876 5688876 3344555544 4568999999999865321
Q ss_pred CCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccc
Q 005663 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~ 496 (684)
. +..+..+++.|+++||.. ..++++|++|+...++.+.
T Consensus 140 ~-~~~~~e~~~~L~~~me~~---------------------~~~~~vI~ag~~~~~~~~~-------------------- 177 (287)
T CHL00181 140 E-RDYGSEAIEILLQVMENQ---------------------RDDLVVIFAGYKDRMDKFY-------------------- 177 (287)
T ss_pred c-cchHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH--------------------
Confidence 1 223455999999999821 1347788887633222221
Q ss_pred cCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHH
Q 005663 497 AGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~itee 576 (684)
...|+|.+||+.+|.|++++.+++.+|+...++.. ...++++
T Consensus 178 -------------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~-------------~~~l~~~ 219 (287)
T CHL00181 178 -------------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ-------------QYQLTPE 219 (287)
T ss_pred -------------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh-------------cCCCChh
Confidence 23599999999999999999999999998754432 3345666
Q ss_pred HHHHHH----HhcCCCCCC-hHHHHHHHHHHHHHHHhcCCCC
Q 005663 577 ALRLIA----KKAISKNTG-ARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 577 Al~~La----~~a~~~~~G-AR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+...+. +..+...+| +|.+++++++++.....++...
T Consensus 220 ~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 220 AEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 554444 444444445 9999999999999988777654
No 24
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.89 E-value=4.8e-22 Score=235.29 Aligned_cols=255 Identities=22% Similarity=0.292 Sum_probs=183.6
Q ss_pred CCCCCCCCCC---CCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccc
Q 005663 255 CWGGSNLGNK---FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS 331 (684)
Q Consensus 255 ~~~g~~~~~~---~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (684)
.|+++|+.+. ..+++.+++.|++.++||+++|+.+.+.+..+..+ . .....
T Consensus 295 ~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~---~-----------------------~~~~~ 348 (775)
T TIGR00763 295 WLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR---G-----------------------KMKGP 348 (775)
T ss_pred HHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---c-----------------------CCCCc
Confidence 3445554432 34566789999999999999999999876422111 0 00124
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc--------CCccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
++||+||||||||++|++||+.++.+|+.++++.+.. ..|+|...+... ..+..+. ..+.||||||
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~-~~l~~~~-----~~~~villDE 422 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRII-QGLKKAK-----TKNPLFLLDE 422 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHH-HHHHHhC-----cCCCEEEEec
Confidence 7999999999999999999999999999998876532 457777644443 3343322 2346999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
||++.+.. .++ ..++||++||. .+.....+..-...+|.++++||+|+|..+
T Consensus 423 idk~~~~~-----~~~-----~~~aLl~~ld~------~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~------------ 474 (775)
T TIGR00763 423 IDKIGSSF-----RGD-----PASALLEVLDP------EQNNAFSDHYLDVPFDLSKVIFIATANSID------------ 474 (775)
T ss_pred hhhcCCcc-----CCC-----HHHHHHHhcCH------HhcCccccccCCceeccCCEEEEEecCCch------------
Confidence 99998641 122 67899999982 111112222223478899999999987311
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
.++|+|++|+. +|.|++|+.+++.+|++..+ ..+..+.
T Consensus 475 --------------------------------------~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l---~~~~~~~ 512 (775)
T TIGR00763 475 --------------------------------------TIPRPLLDRME-VIELSGYTEEEKLEIAKKYL---IPKALED 512 (775)
T ss_pred --------------------------------------hCCHHHhCCee-EEecCCCCHHHHHHHHHHHH---HHHHHHH
Confidence 36799999996 78999999999999998754 2333222
Q ss_pred HhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005663 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 564 ~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
.......+.++++++.+|++ +|+...|+|+|++.|++++..++.++..
T Consensus 513 ~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 513 HGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred cCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHHHh
Confidence 22223368899999999999 5999999999999999999999887764
No 25
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.89 E-value=2.6e-23 Score=204.11 Aligned_cols=166 Identities=40% Similarity=0.596 Sum_probs=127.9
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCC----CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l~~----pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
|..++||+||+|||||.+|+++|+.+.. +++.+||+.+.+ +.+.+..+..++..+++.+...+.+|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 4589999999999999999999999995 999999999985 33445566677777788888888899999999
Q ss_pred cccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCC
Q 005663 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 405 dkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~ 484 (684)
||++++ .+.+.|++++.+|+.||++||+..+ ++..+ ..++++|++||||+|+.+.......+..
T Consensus 78 dKa~~~---~~~~~~v~~~~V~~~LL~~le~g~~--------~d~~g--~~vd~~n~ifI~Tsn~~~~~~~~~~~~~--- 141 (171)
T PF07724_consen 78 DKAHPS---NSGGADVSGEGVQNSLLQLLEGGTL--------TDSYG--RTVDTSNIIFIMTSNFGAEEIIDASRSG--- 141 (171)
T ss_dssp GGCSHT---TTTCSHHHHHHHHHHHHHHHHHSEE--------EETTC--CEEEGTTEEEEEEESSSTHHHHHCHHHC---
T ss_pred hhcccc---ccccchhhHHHHHHHHHHHhcccce--------ecccc--eEEEeCCceEEEecccccchhhhhhccc---
Confidence 999986 4578899999999999999995444 33444 4899999999999999876555433211
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceE
Q 005663 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVL 534 (684)
Q Consensus 485 lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~i 534 (684)
............++++++|+|||++|||.+
T Consensus 142 --------------------~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 --------------------EAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp --------------------TCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred --------------------cccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 001111222335788899999999999964
No 26
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2e-22 Score=225.94 Aligned_cols=220 Identities=24% Similarity=0.317 Sum_probs=172.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|-|+++.|+.|.++|..+.+......+ .|. -|+.+||||||||||||++||++|++++.+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r----~Gi---------------~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFAR----FGI---------------SPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHH----hcC---------------CCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 3678999999999999865554332221 111 135899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+.+.++. +.|+|++ ++.+++.|.+++. +.++||||||||.+..+|+. +.+ + -.++|.++||..|||-.
T Consensus 496 FlsvkgpEL~-sk~vGeS-Er~ir~iF~kAR~----~aP~IiFfDEiDsi~~~R~g-~~~-~-v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 496 FLSVKGPELF-SKYVGES-ERAIREVFRKARQ----VAPCIIFFDEIDALAGSRGG-SSS-G-VTDRVLSQLLTEMDGLE 566 (693)
T ss_pred eeeccCHHHH-HHhcCch-HHHHHHHHHHHhh----cCCeEEehhhHHhHhhccCC-Ccc-c-hHHHHHHHHHHHccccc
Confidence 9999999998 7899999 8999999999874 67899999999999999863 222 3 34569999999999632
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
..+|+++|.++|..+
T Consensus 567 -------------------~~k~V~ViAATNRpd---------------------------------------------- 581 (693)
T KOG0730|consen 567 -------------------ALKNVLVIAATNRPD---------------------------------------------- 581 (693)
T ss_pred -------------------ccCcEEEEeccCChh----------------------------------------------
Confidence 236788888877433
Q ss_pred HHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHH-HHHHHHHhcCCCCCChHH
Q 005663 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 li~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~itee-Al~~La~~a~~~~~GAR~ 594 (684)
.+.++|+. |||.+|.++.++.+...+|++... + ++.++++ .++.|++. +..+..++
T Consensus 582 ----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~--------k-------kmp~~~~vdl~~La~~--T~g~SGAe 640 (693)
T KOG0730|consen 582 ----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCA--------K-------KMPFSEDVDLEELAQA--TEGYSGAE 640 (693)
T ss_pred ----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHH--------h-------cCCCCccccHHHHHHH--hccCChHH
Confidence 13455554 999999999999999999887531 1 4456665 57888884 56677789
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005663 595 LRSLLENILMDAMYEIP 611 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~ 611 (684)
|..+.+++...++.+..
T Consensus 641 l~~lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 641 IVAVCQEAALLALRESI 657 (693)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987644
No 27
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.8e-22 Score=211.07 Aligned_cols=220 Identities=25% Similarity=0.354 Sum_probs=162.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|-|+++.++.|.++|..+.+....... .|. -||.+||||||||||||+||||+|+..+..|
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~----~GI---------------~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF 213 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEE----LGI---------------DPPKGVLLYGPPGTGKTLLAKAVANQTDATF 213 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHH----cCC---------------CCCCceEeeCCCCCcHHHHHHHHHhccCceE
Confidence 789999999999999866554322111 111 1358999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+++.++++. .+|+|++ ...++++|..|.. ..++||||||||.+..+|.+.+.++| ++||..|+++|..
T Consensus 214 IrvvgSElV-qKYiGEG-aRlVRelF~lAre----kaPsIIFiDEIDAIg~kR~d~~t~gD---rEVQRTmleLL~q--- 281 (406)
T COG1222 214 IRVVGSELV-QKYIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIGAKRFDSGTSGD---REVQRTMLELLNQ--- 281 (406)
T ss_pred EEeccHHHH-HHHhccc-hHHHHHHHHHHhh----cCCeEEEEechhhhhcccccCCCCch---HHHHHHHHHHHHh---
Confidence 999999999 5799999 7999999998864 68999999999999999876655544 4478877777740
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
-+| ++. ..|+-+|+++|..|
T Consensus 282 ---lDG--FD~--------~~nvKVI~ATNR~D----------------------------------------------- 301 (406)
T COG1222 282 ---LDG--FDP--------RGNVKVIMATNRPD----------------------------------------------- 301 (406)
T ss_pred ---ccC--CCC--------CCCeEEEEecCCcc-----------------------------------------------
Confidence 011 222 34677888887443
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHH-HHHHHHhcCCCCCChHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA-l~~La~~a~~~~~GAR~L 595 (684)
.+.|.|+ +|||..|.|+.++.+...+|++.+.. ++.+++++ ++.|++. ..+...-+|
T Consensus 302 ---~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr---------------kM~l~~dvd~e~la~~--~~g~sGAdl 361 (406)
T COG1222 302 ---ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR---------------KMNLADDVDLELLARL--TEGFSGADL 361 (406)
T ss_pred ---ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh---------------hccCccCcCHHHHHHh--cCCCchHHH
Confidence 1345555 89999999999999999999975321 33344333 6777774 445555688
Q ss_pred HHHHHHHHHHHHhc
Q 005663 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
+.+...+=.-|+.+
T Consensus 362 kaictEAGm~AiR~ 375 (406)
T COG1222 362 KAICTEAGMFAIRE 375 (406)
T ss_pred HHHHHHHhHHHHHh
Confidence 88887765555543
No 28
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=3.7e-21 Score=200.17 Aligned_cols=229 Identities=17% Similarity=0.334 Sum_probs=161.3
Q ss_pred HhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005663 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 273 ~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
++|++ ++|++.+|+.|.+.+...-.. ..+...+...++. ..++||+||||||||++|+++|+
T Consensus 3 ~~l~~-~~Gl~~vk~~i~~~~~~~~~~-----~~~~~~g~~~~~~------------~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 3 RELSR-MVGLDEVKALIKEIYAWIQIN-----EKRKEEGLKTSKQ------------VLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HHHHH-hcChHHHHHHHHHHHHHHHHH-----HHHHHcCCCCCCC------------cceEEEEcCCCCCHHHHHHHHHH
Confidence 45666 699999999999877421111 1111222222222 27899999999999999999998
Q ss_pred Hh-------CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHH
Q 005663 353 YV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 353 ~l-------~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~v 425 (684)
.+ ..+++.++++++. ..|+|+. ...+.+++..+ .++||||||||.|... +....+..+
T Consensus 65 ~l~~~~~~~~~~~v~~~~~~l~-~~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~------~~~~~~~~~ 129 (261)
T TIGR02881 65 LFKEMNVLSKGHLIEVERADLV-GEYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG------GEKDFGKEA 129 (261)
T ss_pred HHHhcCcccCCceEEecHHHhh-hhhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC------CccchHHHH
Confidence 75 2468888998887 5688876 55566666554 4689999999999642 111223458
Q ss_pred HHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhh
Q 005663 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505 (684)
Q Consensus 426 q~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~ 505 (684)
++.|++.||.. ..++++|++++..+++.+.
T Consensus 130 i~~Ll~~~e~~---------------------~~~~~vila~~~~~~~~~~----------------------------- 159 (261)
T TIGR02881 130 IDTLVKGMEDN---------------------RNEFVLILAGYSDEMDYFL----------------------------- 159 (261)
T ss_pred HHHHHHHHhcc---------------------CCCEEEEecCCcchhHHHH-----------------------------
Confidence 89999999821 1336777777643322111
Q ss_pred hhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhc
Q 005663 506 TSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 506 ~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a 585 (684)
.+.|+|.+||+..+.|++++.+++.+|+...+.. . ...++++++.+|++..
T Consensus 160 ----------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-----------~--~~~l~~~a~~~l~~~~ 210 (261)
T TIGR02881 160 ----------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-----------R--EYKLTEEAKWKLREHL 210 (261)
T ss_pred ----------------hcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-----------c--CCccCHHHHHHHHHHH
Confidence 2468999999999999999999999999864321 1 5569999999987642
Q ss_pred -------CCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005663 586 -------ISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 586 -------~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
-...+++|.++++++.++.++...+...
T Consensus 211 ~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 211 YKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 2335679999999999999987776544
No 29
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=9.8e-22 Score=200.13 Aligned_cols=215 Identities=30% Similarity=0.444 Sum_probs=158.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhh-cccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESS-QKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
.||||++||+.-+..+. |.+ .-.+ ..| .|.+|||+||||||||++||++|+..+.
T Consensus 122 dViGqEeAK~kcrli~~--yLe--nPe~Fg~W--------------------APknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 122 DVIGQEEAKRKCRLIME--YLE--NPERFGDW--------------------APKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred hhhchHHHHHHHHHHHH--Hhh--ChHHhccc--------------------CcceeEEECCCCccHHHHHHHHhcccCC
Confidence 48999999997765552 221 0000 112 2489999999999999999999999999
Q ss_pred CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcc
Q 005663 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
||+.+.++++. -.|+|.. ..++++++..+. .+.+||+||||+|.+...|.-...-+|++- +.++||.-|||.
T Consensus 178 p~l~vkat~li-GehVGdg-ar~Ihely~rA~----~~aPcivFiDE~DAiaLdRryQelRGDVsE--iVNALLTelDgi 249 (368)
T COG1223 178 PLLLVKATELI-GEHVGDG-ARRIHELYERAR----KAAPCIVFIDELDAIALDRRYQELRGDVSE--IVNALLTELDGI 249 (368)
T ss_pred ceEEechHHHH-HHHhhhH-HHHHHHHHHHHH----hcCCeEEEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhccCc
Confidence 99999999998 5689987 788999998875 478999999999999998775555566554 899999999963
Q ss_pred eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccch
Q 005663 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
. ....++.|+++|..+
T Consensus 250 ~-------------------eneGVvtIaaTN~p~--------------------------------------------- 265 (368)
T COG1223 250 K-------------------ENEGVVTIAATNRPE--------------------------------------------- 265 (368)
T ss_pred c-------------------cCCceEEEeecCChh---------------------------------------------
Confidence 2 112277888877433
Q ss_pred hHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
-+.|..++||..-|.|.-++.++...|+...+ +.+ -+.++.. ++++++. +.++..|+++
T Consensus 266 -----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~--------k~~-----Plpv~~~-~~~~~~~--t~g~SgRdik 324 (368)
T COG1223 266 -----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYA--------KKF-----PLPVDAD-LRYLAAK--TKGMSGRDIK 324 (368)
T ss_pred -----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHH--------HhC-----CCccccC-HHHHHHH--hCCCCchhHH
Confidence 24588899999999999999999999887633 222 2333333 6777774 4666668765
Q ss_pred -HHHHHHHHHHHhc
Q 005663 597 -SLLENILMDAMYE 609 (684)
Q Consensus 597 -~iIe~~l~~al~e 609 (684)
+++...+..++.+
T Consensus 325 ekvlK~aLh~Ai~e 338 (368)
T COG1223 325 EKVLKTALHRAIAE 338 (368)
T ss_pred HHHHHHHHHHHHHh
Confidence 5556666665544
No 30
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-21 Score=220.81 Aligned_cols=246 Identities=27% Similarity=0.335 Sum_probs=174.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|-|.+++|..+.+.|..+.+...-....- ++.++||||||||||||++|||+|.++...
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssgl--------------------rkRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGL--------------------RKRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccc--------------------cccceeEEECCCCCchHHHHHHHHhhceee
Confidence 378999999999999976555432211100 012799999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+...++. ..|+|++ |+.+++.|++|+. +.|||||+||+|.+.+.|+..++++.+.++ |.++||..|||-.
T Consensus 733 FlSVKGPELL-NMYVGqS-E~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELDgls 805 (953)
T KOG0736|consen 733 FLSVKGPELL-NMYVGQS-EENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELDGLS 805 (953)
T ss_pred EEeecCHHHH-HHHhcch-HHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhhccc
Confidence 9999999998 5699999 8899999999874 899999999999999999998888888876 8999999999521
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
++ +.+.+.+|.++|..||
T Consensus 806 ----------~~-------~s~~VFViGATNRPDL--------------------------------------------- 823 (953)
T KOG0736|consen 806 ----------DS-------SSQDVFVIGATNRPDL--------------------------------------------- 823 (953)
T ss_pred ----------CC-------CCCceEEEecCCCccc---------------------------------------------
Confidence 11 2233444445553331
Q ss_pred HHhcCCChhhh--cccceEEEecccCHHH-HHHHHhchHHHHHHHHHHHHhhCCceeecCHHH-HHHHHHhcCCCCCChH
Q 005663 518 LIAYGLIPEFV--GRFPVLVSLLALTENQ-LVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGAR 593 (684)
Q Consensus 518 li~~~f~PeLl--~R~d~iI~f~pLs~ee-l~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA-l~~La~~a~~~~~GAR 593 (684)
+.|.|+ +|||..+.+.+-..++ ..+|++ ++.++ +.+++++ +..||+++ +.++..-
T Consensus 824 -----LDpALLRPGRFDKLvyvG~~~d~esk~~vL~----AlTrk-----------FkLdedVdL~eiAk~c-p~~~TGA 882 (953)
T KOG0736|consen 824 -----LDPALLRPGRFDKLVYVGPNEDAESKLRVLE----ALTRK-----------FKLDEDVDLVEIAKKC-PPNMTGA 882 (953)
T ss_pred -----cChhhcCCCccceeEEecCCccHHHHHHHHH----HHHHH-----------ccCCCCcCHHHHHhhC-CcCCchh
Confidence 223333 8999988886665544 444443 34333 3344443 67888874 5555445
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-CC-----CCcccEEEechhccCcc
Q 005663 594 GLRSLLENILMDAMYEIPDVR-AG-----DEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~~~~~-~g-----~~~i~~v~vdee~v~~~ 633 (684)
.|-.+.-.+++.|+.+....- .| .++-..+.|..+++...
T Consensus 883 DlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks 928 (953)
T KOG0736|consen 883 DLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKS 928 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHH
Confidence 788888888888876553321 12 23345677776665543
No 31
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.5e-21 Score=206.05 Aligned_cols=220 Identities=21% Similarity=0.316 Sum_probs=162.7
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.|.|.++||+.|.++|..+.+ ..+++.+++| .+||++||||||||+||||+|.+++
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW----------------------kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW----------------------KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhccccc----------------------ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 378999999999999985544 5566666666 8999999999999999999999999
Q ss_pred CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhc
Q 005663 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..|+.|+.+.++ ++|.|++ +++++-+|+.+.. ..+++|||||||.|+..|+.. +.++..+++.+.||..|||
T Consensus 271 tTFFNVSsstlt-SKwRGeS-EKlvRlLFemARf----yAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 271 TTFFNVSSSTLT-SKWRGES-EKLVRLLFEMARF----YAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDG 342 (491)
T ss_pred CeEEEechhhhh-hhhccch-HHHHHHHHHHHHH----hCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhc
Confidence 999999999999 8999999 8999999999876 478999999999999987754 5566677899999999996
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCC-Cc-CHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGA-FV-DIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn-~~-dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v 513 (684)
-.- ..+.+.++||++++ +. |||
T Consensus 343 ~~~----------------t~e~~k~VmVLAATN~PWdiD---------------------------------------- 366 (491)
T KOG0738|consen 343 VQG----------------TLENSKVVMVLAATNFPWDID---------------------------------------- 366 (491)
T ss_pred ccc----------------ccccceeEEEEeccCCCcchH----------------------------------------
Confidence 321 11224466666544 32 333
Q ss_pred cchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChH
Q 005663 514 KSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 514 ~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR 593 (684)
..|+.||..-|.++-++.+....+++..+.. ...-++--++.|++. ..++..-
T Consensus 367 -----------EAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~--------------~~~~~~~~~~~lae~--~eGySGa 419 (491)
T KOG0738|consen 367 -----------EALRRRLEKRIYIPLPDAEARSALIKILLRS--------------VELDDPVNLEDLAER--SEGYSGA 419 (491)
T ss_pred -----------HHHHHHHhhheeeeCCCHHHHHHHHHHhhcc--------------ccCCCCccHHHHHHH--hcCCChH
Confidence 3444555555555556666666666542111 122334446777774 3455556
Q ss_pred HHHHHHHHHHHHHHhcC
Q 005663 594 GLRSLLENILMDAMYEI 610 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~ 610 (684)
++.++...+-+.+|...
T Consensus 420 DI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 420 DITNVCREASMMAMRRK 436 (491)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888777643
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=4e-20 Score=187.22 Aligned_cols=201 Identities=27% Similarity=0.419 Sum_probs=127.4
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
|++ ++||++++..+...+.....| . -+..|+|||||||+|||+||+.||+.+
T Consensus 23 L~e-fiGQ~~l~~~l~i~i~aa~~r-------~--------------------~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 23 LDE-FIGQEHLKGNLKILIRAAKKR-------G--------------------EALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCC-S-S-HHHHHHHHHHHHHHHCT-------T--------------------S---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHH-ccCcHHHHhhhHHHHHHHHhc-------C--------------------CCcceEEEECCCccchhHHHHHHHhcc
Confidence 444 599999999988776421111 0 012799999999999999999999999
Q ss_pred CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+|...++..+... +. +..++... ..+.||||||||++.+. +|+.|+..||
T Consensus 75 ~~~~~~~sg~~i~k~-------~d-l~~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~LlpamE 126 (233)
T PF05496_consen 75 GVNFKITSGPAIEKA-------GD-LAAILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAME 126 (233)
T ss_dssp T--EEEEECCC--SC-------HH-HHHHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHHH
T ss_pred CCCeEeccchhhhhH-------HH-HHHHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHhc
Confidence 999998888665421 11 22222211 24579999999999998 9999999999
Q ss_pred cceeee-cCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhc
Q 005663 435 GTVVNV-PEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 435 g~~v~V-p~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v 513 (684)
++.+++ -++| ...+.+.++...+.+|.+++-.+
T Consensus 127 d~~idiiiG~g----~~ar~~~~~l~~FTligATTr~g------------------------------------------ 160 (233)
T PF05496_consen 127 DGKIDIIIGKG----PNARSIRINLPPFTLIGATTRAG------------------------------------------ 160 (233)
T ss_dssp CSEEEEEBSSS----SS-BEEEEE----EEEEEESSGC------------------------------------------
T ss_pred cCeEEEEeccc----cccceeeccCCCceEeeeecccc------------------------------------------
Confidence 666543 2222 23466788888888888766221
Q ss_pred cchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChH
Q 005663 514 KSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 514 ~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR 593 (684)
.+.++|++||..+..+..|+.+|+.+|+...... ..+.+++++..+||.++ .+..|
T Consensus 161 --------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~-------------l~i~i~~~~~~~Ia~rs---rGtPR 216 (233)
T PF05496_consen 161 --------LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI-------------LNIEIDEDAAEEIARRS---RGTPR 216 (233)
T ss_dssp --------CTSHCCCTTSSEEEE----THHHHHHHHHHCCHC-------------TT-EE-HHHHHHHHHCT---TTSHH
T ss_pred --------ccchhHHhhcceecchhcCCHHHHHHHHHHHHHH-------------hCCCcCHHHHHHHHHhc---CCChH
Confidence 3679999999999999999999999999864322 27889999999999964 22245
Q ss_pred HHHHHHHH
Q 005663 594 GLRSLLEN 601 (684)
Q Consensus 594 ~Lr~iIe~ 601 (684)
-..+++++
T Consensus 217 iAnrll~r 224 (233)
T PF05496_consen 217 IANRLLRR 224 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 33
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.8e-20 Score=205.34 Aligned_cols=221 Identities=24% Similarity=0.337 Sum_probs=164.7
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|-|+++++.+|..+|..+.++..... +.|.. .|.+|||+||||||||+||||+|++.+..|
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k----~lGi~---------------~PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFK----ALGID---------------APSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHH----HhCCC---------------CCCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 77999999999999987766543322 12222 148999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+...+|. ..|+|++ +..++.+|++++. ..+||||+||||.|.+.|+..+ ...+.++.++||..|||-.
T Consensus 574 isVKGPELl-NkYVGES-ErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~- 643 (802)
T KOG0733|consen 574 ISVKGPELL-NKYVGES-ERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLE- 643 (802)
T ss_pred EeecCHHHH-HHHhhhH-HHHHHHHHHHhhc----CCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccc-
Confidence 999999998 6799999 8999999999864 6899999999999999987643 4455679999999999632
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
+-+++.+|.++|..|+
T Consensus 644 ------------------~R~gV~viaATNRPDi---------------------------------------------- 659 (802)
T KOG0733|consen 644 ------------------ERRGVYVIAATNRPDI---------------------------------------------- 659 (802)
T ss_pred ------------------cccceEEEeecCCCcc----------------------------------------------
Confidence 2344677777764431
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHH-HHHHHHhcCCCCCChHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA-l~~La~~a~~~~~GAR~L 595 (684)
..|.++ +|||.++.+..++.+|...|++.. .+ +.+.-+++++ ++.|+..--..++..-.|
T Consensus 660 ----IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~----tk---------n~k~pl~~dVdl~eia~~~~c~gftGADL 722 (802)
T KOG0733|consen 660 ----IDPAILRPGRLDKLLYVGLPNAEERVAILKTI----TK---------NTKPPLSSDVDLDEIARNTKCEGFTGADL 722 (802)
T ss_pred ----cchhhcCCCccCceeeecCCCHHHHHHHHHHH----hc---------cCCCCCCcccCHHHHhhcccccCCchhhH
Confidence 112222 899999999999999999999752 11 1133344333 667776544345555678
Q ss_pred HHHHHHHHHHHHhc
Q 005663 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
-.+++..-.-++.+
T Consensus 723 aaLvreAsi~AL~~ 736 (802)
T KOG0733|consen 723 AALVREASILALRE 736 (802)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888776555543
No 34
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.8e-20 Score=209.53 Aligned_cols=221 Identities=23% Similarity=0.270 Sum_probs=160.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|.|+++||+.|.+.|. ..+...+... .+. ..|+++||+||||||||+||||+|.+.++|
T Consensus 312 DVAG~deAK~El~E~V~-fLKNP~~Y~~------------------lGA-KiPkGvLL~GPPGTGKTLLAKAiAGEAgVP 371 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVK-FLKNPEQYQE------------------LGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 371 (774)
T ss_pred cccCcHHHHHHHHHHHH-HhcCHHHHHH------------------cCC-cCcCceEEECCCCCcHHHHHHHHhcccCCc
Confidence 48999999999999984 1111111110 011 124899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhc-ccccCCCCchHHHHHHHHHHHhcc
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE-SLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~-~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
|+.++++++.+ .++|.. .+.++.+|..+.. ..|+||||||||.+...|+ ...++.+.++|...++||..|||.
T Consensus 372 F~svSGSEFvE-~~~g~~-asrvr~lf~~ar~----~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 372 FFSVSGSEFVE-MFVGVG-ASRVRDLFPLARK----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred eeeechHHHHH-Hhcccc-hHHHHHHHHHhhc----cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 99999999995 577777 7899999988764 5899999999999999884 344577778889999999999974
Q ss_pred eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccch
Q 005663 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
.. .+++++++++|..|
T Consensus 446 ~~-------------------~~~vi~~a~tnr~d--------------------------------------------- 461 (774)
T KOG0731|consen 446 ET-------------------SKGVIVLAATNRPD--------------------------------------------- 461 (774)
T ss_pred cC-------------------CCcEEEEeccCCcc---------------------------------------------
Confidence 32 25588888877433
Q ss_pred hHHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHH
Q 005663 517 DLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 517 dli~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~ 594 (684)
.+.|+|+ +|||..|.+..++.....+|+..++.. +.+..++..+..|+.+ ++++-.-.
T Consensus 462 -----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~-------------~~~~~e~~dl~~~a~~--t~gf~gad 521 (774)
T KOG0731|consen 462 -----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK-------------KKLDDEDVDLSKLASL--TPGFSGAD 521 (774)
T ss_pred -----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc-------------cCCCcchhhHHHHHhc--CCCCcHHH
Confidence 1223333 899999999999999999998764322 2333344444445553 44443456
Q ss_pred HHHHHHHHHHHHHh
Q 005663 595 LRSLLENILMDAMY 608 (684)
Q Consensus 595 Lr~iIe~~l~~al~ 608 (684)
|.+++...-..+..
T Consensus 522 l~n~~neaa~~a~r 535 (774)
T KOG0731|consen 522 LANLCNEAALLAAR 535 (774)
T ss_pred HHhhhhHHHHHHHH
Confidence 77777666555544
No 35
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.83 E-value=1.3e-19 Score=205.62 Aligned_cols=280 Identities=17% Similarity=0.225 Sum_probs=182.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|++.+++.+.+.+. +.+.+ ..+|||+|++||||+++|++|....
T Consensus 188 ~iig~s~~~~~~~~~i~--------------~~a~~----------------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~ 237 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIE--------------VVAAS----------------DLNVLILGETGVGKELVARAIHAASPRA 237 (509)
T ss_pred ceeecCHHHHHHHHHHH--------------HHhCC----------------CCcEEEECCCCccHHHHHHHHHHhCCcC
Confidence 47899998888888875 11111 2799999999999999999998775
Q ss_pred CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ +.++|+..+ .+........+.++.+.+|+||||||+.|+.. +|..|+
T Consensus 238 ~~p~v~v~c~~~~~~~~e~~lfG~~~g-~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll 302 (509)
T PRK05022 238 DKPLVYLNCAALPESLAESELFGHVKG-AFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLL 302 (509)
T ss_pred CCCeEEEEcccCChHHHHHHhcCcccc-ccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHH
Confidence 57999999998853 223332211 11111112234577788999999999999988 999999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
++|+...+.- -| ..+.+. .++.+|++++ .++++.+.++
T Consensus 303 ~~l~~~~~~~--~g-----~~~~~~---~~~RiI~~t~-~~l~~~~~~~------------------------------- 340 (509)
T PRK05022 303 RVLQYGEIQR--VG-----SDRSLR---VDVRVIAATN-RDLREEVRAG------------------------------- 340 (509)
T ss_pred HHHhcCCEee--CC-----CCccee---cceEEEEecC-CCHHHHHHcC-------------------------------
Confidence 9998433210 11 111122 2355666654 3455554433
Q ss_pred hhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~ 587 (684)
.|.++|+.|+.. .|.++||.+ +|+..++..++..+.++ +.. ..+.+++++++.|.. |+
T Consensus 341 -----------~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~----~~~--~~~~~s~~a~~~L~~--y~ 401 (509)
T PRK05022 341 -----------RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRAR----LGL--RSLRLSPAAQAALLA--YD 401 (509)
T ss_pred -----------CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHH----cCC--CCCCCCHHHHHHHHh--CC
Confidence 477888899976 588899987 78888887655444322 221 246799999999999 78
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCcccC----CCcceEE---cCCChHHHHHHHhhhhhh
Q 005663 588 KNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDR----GCGAKIL---YGKGALDRYLAQHKRKDL 660 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~~----~~~~~i~---~~~g~l~~~l~~~~~~~~ 660 (684)
|++|.|+|+++|++++..+.....+. ...|+.+++..... ....... .....+...+++.|++.|
T Consensus 402 WPGNvrEL~~~i~ra~~~~~~~~~~~--------~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I 473 (509)
T PRK05022 402 WPGNVRELEHVISRAALLARARGAGR--------IVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLI 473 (509)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCccCc--------cceecHHHcCcccccccCccccccccccccccCHHHHHHHHHHHHH
Confidence 88999999999999987653221110 12233333221100 0000000 112356777889999999
Q ss_pred hhccccCCCCC
Q 005663 661 ETNVAGADGEP 671 (684)
Q Consensus 661 ~~~~~~~~~~~ 671 (684)
.+.++.++|+.
T Consensus 474 ~~aL~~~~gn~ 484 (509)
T PRK05022 474 RQALAQHQGNW 484 (509)
T ss_pred HHHHHHcCCCH
Confidence 99999999885
No 36
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.83 E-value=4.7e-20 Score=198.48 Aligned_cols=283 Identities=18% Similarity=0.244 Sum_probs=179.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---~ 355 (684)
++|++.+.+.+.+.+. + ++.. ..+|||+|++||||+++|++|.... +
T Consensus 1 liG~S~~m~~~~~~~~----~----------~a~~----------------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~ 50 (329)
T TIGR02974 1 LIGESNAFLEVLEQVS----R----------LAPL----------------DRPVLIIGERGTGKELIAARLHYLSKRWQ 50 (329)
T ss_pred CCcCCHHHHHHHHHHH----H----------HhCC----------------CCCEEEECCCCChHHHHHHHHHHhcCccC
Confidence 4788888888888775 1 1111 1789999999999999999997766 4
Q ss_pred CCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHH
Q 005663 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.||+.+||+.+.+ ...+|+..+ .+........+.++.+.+|+||||||+.|+.. +|..|++
T Consensus 51 ~pfv~vnc~~~~~~~l~~~lfG~~~g-~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~ 115 (329)
T TIGR02974 51 GPLVKLNCAALSENLLDSELFGHEAG-AFTGAQKRHQGRFERADGGTLFLDELATASLL--------------VQEKLLR 115 (329)
T ss_pred CCeEEEeCCCCChHHHHHHHhccccc-cccCcccccCCchhhCCCCEEEeCChHhCCHH--------------HHHHHHH
Confidence 7999999998753 112232211 11111112245577888999999999999998 9999999
Q ss_pred HHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhh
Q 005663 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~ 511 (684)
+|+...+. ..|+ .+. -..++.+|++++ .++++++.++
T Consensus 116 ~l~~~~~~--~~g~-----~~~---~~~~~RiI~at~-~~l~~~~~~g-------------------------------- 152 (329)
T TIGR02974 116 VIEYGEFE--RVGG-----SQT---LQVDVRLVCATN-ADLPALAAEG-------------------------------- 152 (329)
T ss_pred HHHcCcEE--ecCC-----Cce---eccceEEEEech-hhHHHHhhcC--------------------------------
Confidence 99843322 0111 111 123466777664 3444444332
Q ss_pred hccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCce--eecCHHHHHHHHHhcC
Q 005663 512 TVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVK--LHFTENALRLIAKKAI 586 (684)
Q Consensus 512 ~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~--l~iteeAl~~La~~a~ 586 (684)
.|+++|+.|+.. .|.++||.+ +|+..++..++..+.+++ +.. ..++++|++.|.. |
T Consensus 153 ----------~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-------~~~~~~~ls~~a~~~L~~--y 213 (329)
T TIGR02974 153 ----------RFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL-------GLPLFPGFTPQAREQLLE--Y 213 (329)
T ss_pred ----------chHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHh-------CCCCCCCcCHHHHHHHHh--C
Confidence 477899999965 789999995 889988887655543332 223 5799999999999 7
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEech----hccCcccC-----CCcceE----EcCCChHHHHHH
Q 005663 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDE----EAVGSEDR-----GCGAKI----LYGKGALDRYLA 653 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde----e~v~~~~~-----~~~~~i----~~~~g~l~~~l~ 653 (684)
+|++|+|+|+++|++++..+-.+.....+ -.+..+ ... ..+....+ ...... ......|+..+.
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 290 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRHGLEEAPIDE--IIIDPF-ASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAQQ 290 (329)
T ss_pred CCCchHHHHHHHHHHHHHhCCCCccchhh--cccccc-ccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 88899999999999988754111110000 000000 000 00000000 000000 000135788889
Q ss_pred HhhhhhhhhccccCCCCC
Q 005663 654 QHKRKDLETNVAGADGEP 671 (684)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~ 671 (684)
+.|+..|+..++.++|+.
T Consensus 291 ~~E~~~I~~aL~~~~gn~ 308 (329)
T TIGR02974 291 DYEIELLQQALAEAQFNQ 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCH
Confidence 999999999999988874
No 37
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.7e-19 Score=197.62 Aligned_cols=232 Identities=24% Similarity=0.377 Sum_probs=165.7
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005663 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~ 345 (684)
.+|.+....-.+.|-|.|+||+.|.+.|. |.+ ...+=.+.| . ++ |.+|||+||||||||+
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVe--fLk---dP~kftrLG---G-----------KL-PKGVLLvGPPGTGKTl 352 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVE--FLK---DPTKFTRLG---G-----------KL-PKGVLLVGPPGTGKTL 352 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHH--Hhc---CcHHhhhcc---C-----------cC-CCceEEeCCCCCchhH
Confidence 34445444445668999999999999884 221 111000111 0 11 3799999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHH
Q 005663 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 346 LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~v 425 (684)
||||+|.+.++||+....+++.+ -|+|.+ .+.++++|..+. +..||||||||||.+..+|.....+ ...+.
T Consensus 353 LARAvAGEA~VPFF~~sGSEFdE-m~VGvG-ArRVRdLF~aAk----~~APcIIFIDEiDavG~kR~~~~~~---y~kqT 423 (752)
T KOG0734|consen 353 LARAVAGEAGVPFFYASGSEFDE-MFVGVG-ARRVRDLFAAAK----ARAPCIIFIDEIDAVGGKRNPSDQH---YAKQT 423 (752)
T ss_pred HHHHhhcccCCCeEeccccchhh-hhhccc-HHHHHHHHHHHH----hcCCeEEEEechhhhcccCCccHHH---HHHHH
Confidence 99999999999999999999984 599998 789999998875 3689999999999998876543221 34568
Q ss_pred HHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcC-HHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005663 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 426 q~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~d-Lek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~ 504 (684)
.++||..|||..-+ .-||+|.++||.+ ||+++
T Consensus 424 lNQLLvEmDGF~qN-------------------eGiIvigATNfpe~LD~AL---------------------------- 456 (752)
T KOG0734|consen 424 LNQLLVEMDGFKQN-------------------EGIIVIGATNFPEALDKAL---------------------------- 456 (752)
T ss_pred HHHHHHHhcCcCcC-------------------CceEEEeccCChhhhhHHh----------------------------
Confidence 89999999975421 2378888888764 33322
Q ss_pred hhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHH-HHHHHH
Q 005663 505 VTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAK 583 (684)
Q Consensus 505 ~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA-l~~La~ 583 (684)
.+| +|||..|..+.++..-..+|+..++.. +..++++ ...||+
T Consensus 457 ------------------~RP---GRFD~~v~Vp~PDv~GR~eIL~~yl~k---------------i~~~~~VD~~iiAR 500 (752)
T KOG0734|consen 457 ------------------TRP---GRFDRHVTVPLPDVRGRTEILKLYLSK---------------IPLDEDVDPKIIAR 500 (752)
T ss_pred ------------------cCC---CccceeEecCCCCcccHHHHHHHHHhc---------------CCcccCCCHhHhcc
Confidence 223 899999999999998888888764332 2233222 234455
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005663 584 KAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 584 ~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
-+.++..-+|.|+|..+.+.+..+..
T Consensus 501 --GT~GFsGAdLaNlVNqAAlkAa~dga 526 (752)
T KOG0734|consen 501 --GTPGFSGADLANLVNQAALKAAVDGA 526 (752)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHhcCc
Confidence 35666667899999998887766543
No 38
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=186.32 Aligned_cols=127 Identities=27% Similarity=0.469 Sum_probs=107.2
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.|.|.+.||+.|.++|..+.+ .++.+.+++| +.+||+|||||||++||+++|.+.+
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw----------------------rgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW----------------------RGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcc----------------------eeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 378999999999999976544 4444444444 8999999999999999999999999
Q ss_pred CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhc
Q 005663 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..|+.++.++++ +.|.|++ ++.+..+|+.++. ..++||||||||.++..|.. ...+..+++...||-.|.|
T Consensus 192 STFFSvSSSDLv-SKWmGES-EkLVknLFemARe----~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 192 STFFSVSSSDLV-SKWMGES-EKLVKNLFEMARE----NKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQG 262 (439)
T ss_pred CceEEeehHHHH-HHHhccH-HHHHHHHHHHHHh----cCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhc
Confidence 999999999999 8999999 8999999998864 68999999999999876542 3344456699999999985
No 39
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.80 E-value=5.3e-19 Score=200.71 Aligned_cols=219 Identities=19% Similarity=0.291 Sum_probs=151.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH-----
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY----- 353 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~----- 353 (684)
++|++.+.+.+...+. ..+.+ ..+|||+|++||||+++|++|...
T Consensus 221 iiG~S~~m~~~~~~i~--------------~~A~s----------------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~ 270 (538)
T PRK15424 221 LLGQSPQMEQVRQTIL--------------LYARS----------------SAAVLIQGETGTGKELAAQAIHREYFARH 270 (538)
T ss_pred eeeCCHHHHHHHHHHH--------------HHhCC----------------CCcEEEECCCCCCHHHHHHHHHHhhcccc
Confidence 7999999998888874 11111 179999999999999999999877
Q ss_pred ------hCCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchH
Q 005663 354 ------VNVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 354 ------l~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e 423 (684)
.+.||+.+||+.+.+ +..+|+..++.....-....+.++.+.+|+||||||+.|+..
T Consensus 271 ~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~------------- 337 (538)
T PRK15424 271 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP------------- 337 (538)
T ss_pred cccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHH-------------
Confidence 367999999998853 334554422211111112346678889999999999999998
Q ss_pred HHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005663 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~ 503 (684)
+|..|+++|+.+.+. +.+..+.+.+ ++.+|++++ .+|++.+.++
T Consensus 338 -~Q~kLl~~L~e~~~~-------r~G~~~~~~~---dvRiIaat~-~~L~~~v~~g------------------------ 381 (538)
T PRK15424 338 -LQTRLLRVLEEKEVT-------RVGGHQPVPV---DVRVISATH-CDLEEDVRQG------------------------ 381 (538)
T ss_pred -HHHHHHhhhhcCeEE-------ecCCCceecc---ceEEEEecC-CCHHHHHhcc------------------------
Confidence 999999999844332 1111222223 355666654 4566665544
Q ss_pred hhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHH--
Q 005663 504 VVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL-- 578 (684)
Q Consensus 504 ~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl-- 578 (684)
.|+++|+.|+.. .|.++||.+ +|+..++..++.....++ ...++++++
T Consensus 382 ------------------~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---------~~~~~~~a~~~ 434 (538)
T PRK15424 382 ------------------RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL---------SAPFSAALRQG 434 (538)
T ss_pred ------------------cchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc---------CCCCCHHHHHh
Confidence 366788888865 688888887 788888877544432221 223666555
Q ss_pred -----HHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005663 579 -----RLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 579 -----~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
+.|.. |+|++|+|+|+++|++++..
T Consensus 435 ~~~a~~~L~~--y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLH--YDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHh--CCCCchHHHHHHHHHHHHHh
Confidence 66666 78999999999999998873
No 40
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.79 E-value=9.4e-19 Score=198.61 Aligned_cols=274 Identities=16% Similarity=0.263 Sum_probs=177.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---~ 355 (684)
++|++.+.+.+...+. ..+.. ..+|||.|++||||+++|++|.... +
T Consensus 214 iiG~S~~m~~~~~~i~--------------~~A~~----------------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~ 263 (526)
T TIGR02329 214 LLGASAPMEQVRALVR--------------LYARS----------------DATVLILGESGTGKELVAQAIHQLSGRRD 263 (526)
T ss_pred eeeCCHHHHHHHHHHH--------------HHhCC----------------CCcEEEECCCCcCHHHHHHHHHHhcCcCC
Confidence 7999999998888774 11111 1799999999999999999998765 6
Q ss_pred CCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHH
Q 005663 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.||+.+||..+.+ +.++|+..+......-....+.++.+.+|+||||||+.|+.. +|..|++
T Consensus 264 ~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~~Ll~ 329 (526)
T TIGR02329 264 FPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQTRLLR 329 (526)
T ss_pred CCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHH--------------HHHHHHH
Confidence 7999999998853 334554422211111112345677889999999999999998 9999999
Q ss_pred HHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhh
Q 005663 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~ 511 (684)
+|+.+.+. +.+..+.+.+ ++.+|++++ .+|++.+.++
T Consensus 330 ~L~~~~~~-------r~g~~~~~~~---dvRiIaat~-~~l~~~v~~g-------------------------------- 366 (526)
T TIGR02329 330 VLEEREVV-------RVGGTEPVPV---DVRVVAATH-CALTTAVQQG-------------------------------- 366 (526)
T ss_pred HHhcCcEE-------ecCCCceeee---cceEEeccC-CCHHHHhhhc--------------------------------
Confidence 99844332 1111222223 355566554 3555444433
Q ss_pred hccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHH-------H
Q 005663 512 TVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRL-------I 581 (684)
Q Consensus 512 ~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~-------L 581 (684)
.|+++|+.|++. .|.++||.+ +|+..++..++..+... . .+.+++++++. |
T Consensus 367 ----------~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~----~-----~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 367 ----------RFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAA----L-----RLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ----------chhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHH----c-----CCCCCHHHHHHhHHHHHHH
Confidence 477888999964 789999988 78888888765544322 1 34589999888 7
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCcccCCC---cceEEcCCChHHHHHHHhhhh
Q 005663 582 AKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGC---GAKILYGKGALDRYLAQHKRK 658 (684)
Q Consensus 582 a~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~~~~---~~~i~~~~g~l~~~l~~~~~~ 658 (684)
.. |+|++|+|+|+++|++++..... ... -.|+.+.+....+.. ..........+... ++.|++
T Consensus 428 ~~--y~WPGNvrEL~nvier~~i~~~~--~~~---------~~I~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~Er~ 493 (526)
T TIGR02329 428 QR--YPWPGNVRELRNLVERLALELSA--MPA---------GALTPDVLRALAPELAEASGKGKTSALSLRER-SRVEAL 493 (526)
T ss_pred Hh--CCCCchHHHHHHHHHHHHHhccc--CCC---------CccCHHHhhhhchhhcccccccccCccchHHH-HHHHHH
Confidence 77 78899999999999998875310 000 012222211100000 00000001134433 678899
Q ss_pred hhhhccccCCCCCC
Q 005663 659 DLETNVAGADGEPE 672 (684)
Q Consensus 659 ~~~~~~~~~~~~~~ 672 (684)
.|...++.++|+..
T Consensus 494 ~I~~aL~~~~Gn~~ 507 (526)
T TIGR02329 494 AVRAALERFGGDRD 507 (526)
T ss_pred HHHHHHHHcCCCHH
Confidence 99999999988853
No 41
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.79 E-value=2.3e-18 Score=200.26 Aligned_cols=270 Identities=16% Similarity=0.234 Sum_probs=173.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|.+.+.+.+...+. +++.. ..+|||+|++||||+++|++|.+..
T Consensus 326 ~l~g~s~~~~~~~~~~~--------------~~a~~----------------~~pvli~Ge~GtGK~~~A~~ih~~s~r~ 375 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGR--------------QAAKS----------------SFPVLLCGEEGVGKALLAQAIHNESERA 375 (638)
T ss_pred ceEECCHHHHHHHHHHH--------------HHhCc----------------CCCEEEECCCCcCHHHHHHHHHHhCCcc
Confidence 36899998888887774 11111 1689999999999999999998876
Q ss_pred CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ +.++|+..+. .-....+.++.+.+|+||||||+.|+.. +|..|+
T Consensus 376 ~~pfv~vnc~~~~~~~~~~elfg~~~~~----~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q~~Ll 437 (638)
T PRK11388 376 AGPYIAVNCQLYPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQSALL 437 (638)
T ss_pred CCCeEEEECCCCChHHHHHHhcCCCCcC----ccCCCCCceeECCCCEEEEcChhhCCHH--------------HHHHHH
Confidence 47999999998853 2233332100 0011234566788999999999999998 999999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
++|+...+. ..+..+.+.+ ++.+|++++ .++++++.++
T Consensus 438 ~~l~~~~~~-------~~~~~~~~~~---~~riI~~t~-~~l~~~~~~~------------------------------- 475 (638)
T PRK11388 438 QVLKTGVIT-------RLDSRRLIPV---DVRVIATTT-ADLAMLVEQN------------------------------- 475 (638)
T ss_pred HHHhcCcEE-------eCCCCceEEe---eEEEEEecc-CCHHHHHhcC-------------------------------
Confidence 999843322 1111222233 355666655 3555555433
Q ss_pred hhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~ 587 (684)
.|+++|+.||.. .|.++||.+ +|+..++..++..+.+++ +..+.+++++++.|.+ |+
T Consensus 476 -----------~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~~s~~a~~~L~~--y~ 535 (638)
T PRK11388 476 -----------RFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF-------STRLKIDDDALARLVS--YR 535 (638)
T ss_pred -----------CChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh-------CCCCCcCHHHHHHHHc--CC
Confidence 467888888865 588899987 688888887655443322 2245799999999999 78
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCccc-C-CCcceEEcCCChHHHHHHHhhhhhhhhccc
Q 005663 588 KNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-R-GCGAKILYGKGALDRYLAQHKRKDLETNVA 665 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~-~-~~~~~i~~~~g~l~~~l~~~~~~~~~~~~~ 665 (684)
|++|.|+|+++|++++... + . -.|+.+++...- . ...............-+++.|++.|.+.+.
T Consensus 536 WPGNvreL~~~l~~~~~~~--~---~---------~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~l~~~E~~~i~~al~ 601 (638)
T PRK11388 536 WPGNDFELRSVIENLALSS--D---N---------GRIRLSDLPEHLFTEQATDDVSATRLSTSLSLAELEKEAIINAAQ 601 (638)
T ss_pred CCChHHHHHHHHHHHHHhC--C---C---------CeecHHHCchhhhcccccccccccccccchhHHHHHHHHHHHHHH
Confidence 8888999999999987642 1 0 012222221100 0 000000000001112467889999999998
Q ss_pred cCCCCC
Q 005663 666 GADGEP 671 (684)
Q Consensus 666 ~~~~~~ 671 (684)
.++|+.
T Consensus 602 ~~~gn~ 607 (638)
T PRK11388 602 VCGGRI 607 (638)
T ss_pred HhCCCH
Confidence 888874
No 42
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.79 E-value=7.3e-19 Score=200.43 Aligned_cols=221 Identities=20% Similarity=0.311 Sum_probs=154.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|++.+.+.+.+.+. + .+.. ..+|||+||+||||+++|++|+...
T Consensus 197 ~liG~s~~~~~~~~~~~----~----------~a~~----------------~~pvli~Ge~GtGK~~lA~~ih~~s~r~ 246 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQAR----V----------VARS----------------NSTVLLRGESGTGKELIAKAIHYLSPRA 246 (534)
T ss_pred ceEECCHHHHHHHHHHH----H----------HhCc----------------CCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 57899999998888775 1 1111 2789999999999999999998876
Q ss_pred CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ ...+|+..+. +........+.++.+.+|+||||||+.|+.. +|..|+
T Consensus 247 ~~pfv~i~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll 311 (534)
T TIGR01817 247 KRPFVKVNCAALSETLLESELFGHEKGA-FTGAIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLL 311 (534)
T ss_pred CCCeEEeecCCCCHHHHHHHHcCCCCCc-cCCCCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHH
Confidence 57999999998753 1122222100 0000111234466788999999999999998 999999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
++|+...+. ..+..+.+. .++.+|++++ .++++.+..
T Consensus 312 ~~l~~~~~~-------~~~~~~~~~---~~~riI~~s~-~~l~~~~~~-------------------------------- 348 (534)
T TIGR01817 312 RVLQEGEFE-------RVGGNRTLK---VDVRLVAATN-RDLEEAVAK-------------------------------- 348 (534)
T ss_pred HHHhcCcEE-------ECCCCceEe---ecEEEEEeCC-CCHHHHHHc--------------------------------
Confidence 999843322 011112222 2355676654 344444432
Q ss_pred hhccchhHHhcCCChhhhcccce-EEEecccC--HHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs--~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~ 587 (684)
..|+++|++|++. .|.++||. .+|+..++..++..+.++ + +..+.+++++++.|.. |+
T Consensus 349 ----------~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~----~---~~~~~~s~~a~~~L~~--~~ 409 (534)
T TIGR01817 349 ----------GEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRE----N---GRPLTITPSAIRVLMS--CK 409 (534)
T ss_pred ----------CCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHH----c---CCCCCCCHHHHHHHHh--CC
Confidence 2478999999976 68899998 589999988765554332 2 2246799999999999 68
Q ss_pred CCCChHHHHHHHHHHHHH
Q 005663 588 KNTGARGLRSLLENILMD 605 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~ 605 (684)
|++|+|+|+++|++++..
T Consensus 410 WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 410 WPGNVRELENCLERTATL 427 (534)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 889999999999998864
No 43
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.8e-18 Score=178.78 Aligned_cols=188 Identities=27% Similarity=0.453 Sum_probs=144.1
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
|+++ +||+++|++|...+...-.| . ...-|+||+||||.|||+||..+|+++
T Consensus 25 l~ef-iGQ~~vk~~L~ifI~AAk~r-------~--------------------e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 25 LDEF-IGQEKVKEQLQIFIKAAKKR-------G--------------------EALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHHh-cChHHHHHHHHHHHHHHHhc-------C--------------------CCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 4444 99999999999988522111 0 012799999999999999999999999
Q ss_pred CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+..+-..+...+..++ +..+.+.. - ..+-||||||||++.+. +-..|..+||
T Consensus 77 gvn~k~tsGp~leK~g----DlaaiLt~---L-------e~~DVLFIDEIHrl~~~--------------vEE~LYpaME 128 (332)
T COG2255 77 GVNLKITSGPALEKPG----DLAAILTN---L-------EEGDVLFIDEIHRLSPA--------------VEEVLYPAME 128 (332)
T ss_pred cCCeEecccccccChh----hHHHHHhc---C-------CcCCeEEEehhhhcChh--------------HHHHhhhhhh
Confidence 9999888887765432 21222222 1 23469999999999998 9999999999
Q ss_pred cceeeec-CCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhc
Q 005663 435 GTVVNVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 435 g~~v~Vp-~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v 513 (684)
+..++|- ++| +..+.+.++...+.+|-+++..+
T Consensus 129 Df~lDI~IG~g----p~Arsv~ldLppFTLIGATTr~G------------------------------------------ 162 (332)
T COG2255 129 DFRLDIIIGKG----PAARSIRLDLPPFTLIGATTRAG------------------------------------------ 162 (332)
T ss_pred heeEEEEEccC----CccceEeccCCCeeEeeeccccc------------------------------------------
Confidence 9888763 222 34567888999998887766322
Q ss_pred cchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhc
Q 005663 514 KSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 514 ~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a 585 (684)
.+..+|+.||..+..+.-|+.+|+.+|+.+....+ .+.+++++...||+++
T Consensus 163 --------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-------------~i~i~~~~a~eIA~rS 213 (332)
T COG2255 163 --------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-------------GIEIDEEAALEIARRS 213 (332)
T ss_pred --------cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-------------CCCCChHHHHHHHHhc
Confidence 25688999999999999999999999998743222 7789999999999974
No 44
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.78 E-value=1.4e-18 Score=186.74 Aligned_cols=283 Identities=16% Similarity=0.227 Sum_probs=177.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|.+.+.+.+.+.+. + ++.. ..+|||+|++||||+++|++|....
T Consensus 7 ~liG~S~~~~~~~~~i~----~----------~a~~----------------~~pVlI~GE~GtGK~~lA~~iH~~s~r~ 56 (326)
T PRK11608 7 NLLGEANSFLEVLEQVS----R----------LAPL----------------DKPVLIIGERGTGKELIASRLHYLSSRW 56 (326)
T ss_pred ccEECCHHHHHHHHHHH----H----------HhCC----------------CCCEEEECCCCCcHHHHHHHHHHhCCcc
Confidence 36999999999988885 1 1111 2789999999999999999998665
Q ss_pred CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ ..++|...+. +........+.++.+.+|+||||||+.|+.. +|..|+
T Consensus 57 ~~pfv~v~c~~~~~~~~~~~lfg~~~~~-~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~Q~~L~ 121 (326)
T PRK11608 57 QGPFISLNCAALNENLLDSELFGHEAGA-FTGAQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLL 121 (326)
T ss_pred CCCeEEEeCCCCCHHHHHHHHccccccc-cCCcccccCCchhccCCCeEEeCChhhCCHH--------------HHHHHH
Confidence 46999999998752 1223322110 0000011234567788999999999999998 999999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
++|+...+. ..+... .+. .++.+|++++ .++++++.++
T Consensus 122 ~~l~~~~~~-------~~g~~~--~~~-~~~RiI~~s~-~~l~~l~~~g------------------------------- 159 (326)
T PRK11608 122 RVIEYGELE-------RVGGSQ--PLQ-VNVRLVCATN-ADLPAMVAEG------------------------------- 159 (326)
T ss_pred HHHhcCcEE-------eCCCCc--eee-ccEEEEEeCc-hhHHHHHHcC-------------------------------
Confidence 999843321 011111 111 2466676654 2444444332
Q ss_pred hhccchhHHhcCCChhhhcccc-eEEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~ 587 (684)
.|.++|+.||. ..|.++||.+ +|+..++..++..+.+++. . .+...+++++++.|.. |+
T Consensus 160 -----------~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~----~-~~~~~~s~~al~~L~~--y~ 221 (326)
T PRK11608 160 -----------KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELG----L-PLFPGFTERARETLLN--YR 221 (326)
T ss_pred -----------CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhC----C-CCCCCCCHHHHHHHHh--CC
Confidence 47789999995 4789999988 7888888876555433321 1 1124699999999999 78
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcc--cEEEechhccC-cccCCCcceEEcCCChHHHHHHHhhhhhhhhcc
Q 005663 588 KNTGARGLRSLLENILMDAMYEIPDVRAGDEVI--DAVVVDEEAVG-SEDRGCGAKILYGKGALDRYLAQHKRKDLETNV 664 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i--~~v~vdee~v~-~~~~~~~~~i~~~~g~l~~~l~~~~~~~~~~~~ 664 (684)
|++|.|+|+++|++++..+-....... .+ ........... ......... .....+..++++.|+..|.+.+
T Consensus 222 WPGNvrEL~~vl~~a~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~Er~~I~~aL 295 (326)
T PRK11608 222 WPGNIRELKNVVERSVYRHGTSEYPLD----NIIIDPFKRRPAEEAIAVSETTSLP--TLPLDLREWQHQQEKELLQRSL 295 (326)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCCchh----hcccccccccccccccccccccccc--cccccHHHHHHHHHHHHHHHHH
Confidence 888999999999998874321111000 00 00000000000 000000000 0012477778899999999999
Q ss_pred ccCCCCC
Q 005663 665 AGADGEP 671 (684)
Q Consensus 665 ~~~~~~~ 671 (684)
..++|+.
T Consensus 296 ~~~~gn~ 302 (326)
T PRK11608 296 QQAKFNQ 302 (326)
T ss_pred HHhCCCH
Confidence 9888874
No 45
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.78 E-value=2.1e-18 Score=196.14 Aligned_cols=270 Identities=14% Similarity=0.203 Sum_probs=172.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|.+.+.+.+...+. + ++.. ..+|||+|++||||+++|+++....
T Consensus 205 ~~ig~s~~~~~~~~~~~----~----------~A~~----------------~~pvlI~GE~GtGK~~lA~aiH~~s~r~ 254 (520)
T PRK10820 205 QIVAVSPKMRQVVEQAR----K----------LAML----------------DAPLLITGDTGTGKDLLAYACHLRSPRG 254 (520)
T ss_pred ceeECCHHHHHHHHHHH----H----------HhCC----------------CCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 47899998888777664 1 1111 1689999999999999999997665
Q ss_pred CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||+.+.+ +..+|+..+... .......+.++.+.+|+||||||+.|+.. +|..|+
T Consensus 255 ~~pfv~inca~~~~~~~e~elFG~~~~~~~-~~~~~~~g~~e~a~~GtL~LdeI~~L~~~--------------~Q~~Ll 319 (520)
T PRK10820 255 KKPFLALNCASIPDDVVESELFGHAPGAYP-NALEGKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLL 319 (520)
T ss_pred CCCeEEeccccCCHHHHHHHhcCCCCCCcC-CcccCCCChhhhcCCCEEEEeChhhCCHH--------------HHHHHH
Confidence 46999999998753 122332211100 00112345577788999999999999998 999999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
++++...+. +.+....+. .++.+|++++ .++++++.++
T Consensus 320 ~~l~~~~~~-------~~g~~~~~~---~~vRiI~st~-~~l~~l~~~g------------------------------- 357 (520)
T PRK10820 320 RFLNDGTFR-------RVGEDHEVH---VDVRVICATQ-KNLVELVQKG------------------------------- 357 (520)
T ss_pred HHHhcCCcc-------cCCCCccee---eeeEEEEecC-CCHHHHHHcC-------------------------------
Confidence 999843221 111111122 2455666654 3555554433
Q ss_pred hhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~ 587 (684)
.|+++|+.|+.. .|.++||.+ +|+..++..++..+.++ ... ....+++++++.|.. |.
T Consensus 358 -----------~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~----~g~--~~~~ls~~a~~~L~~--y~ 418 (520)
T PRK10820 358 -----------EFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADE----QGV--PRPKLAADLNTVLTR--YG 418 (520)
T ss_pred -----------CccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHH----cCC--CCCCcCHHHHHHHhc--CC
Confidence 377889999864 688899988 67888887654443322 211 135799999999998 78
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccC--cccCCCcceEEcCCChHHHHHHHhhhhhhhhccc
Q 005663 588 KNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVG--SEDRGCGAKILYGKGALDRYLAQHKRKDLETNVA 665 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~--~~~~~~~~~i~~~~g~l~~~l~~~~~~~~~~~~~ 665 (684)
|++|.|+|+++|++++..+-... |+.+++. ..............+.|+..+++.|++.+++.+.
T Consensus 419 WPGNvreL~nvl~~a~~~~~~~~--------------i~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~~E~~~i~~~l~ 484 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQLEGYE--------------LRPQDILLPDYDAAVAVGEDAMEGSLDEITSRFERSVLTRLYR 484 (520)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCc--------------ccHHHcCCcccccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 88899999999999887431111 1111111 0000000000012346888889999988877655
Q ss_pred cC
Q 005663 666 GA 667 (684)
Q Consensus 666 ~~ 667 (684)
..
T Consensus 485 ~~ 486 (520)
T PRK10820 485 NY 486 (520)
T ss_pred HC
Confidence 43
No 46
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.77 E-value=6.1e-18 Score=190.29 Aligned_cols=216 Identities=22% Similarity=0.319 Sum_probs=153.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|.|++.+|+.+...... +.. ..+ ..+. .++.++||+||||||||++|+++|..++.||
T Consensus 230 vgGl~~lK~~l~~~~~~-~~~---~~~---~~gl---------------~~pkGILL~GPpGTGKTllAkaiA~e~~~~~ 287 (489)
T CHL00195 230 IGGLDNLKDWLKKRSTS-FSK---QAS---NYGL---------------PTPRGLLLVGIQGTGKSLTAKAIANDWQLPL 287 (489)
T ss_pred hcCHHHHHHHHHHHHHH-hhH---HHH---hcCC---------------CCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 78999999988765421 110 000 1111 1247999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++.+. .+|+|++ +..++.+|..+. ...+|||||||||++...+...+. .....++...|+..|++.
T Consensus 288 ~~l~~~~l~-~~~vGes-e~~l~~~f~~A~----~~~P~IL~IDEID~~~~~~~~~~d--~~~~~rvl~~lL~~l~~~-- 357 (489)
T CHL00195 288 LRLDVGKLF-GGIVGES-ESRMRQMIRIAE----ALSPCILWIDEIDKAFSNSESKGD--SGTTNRVLATFITWLSEK-- 357 (489)
T ss_pred EEEEhHHhc-ccccChH-HHHHHHHHHHHH----hcCCcEEEehhhhhhhccccCCCC--chHHHHHHHHHHHHHhcC--
Confidence 999999887 6899998 678888887653 357899999999998765332111 122345778888888721
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
..++++|+|+|..+
T Consensus 358 -------------------~~~V~vIaTTN~~~----------------------------------------------- 371 (489)
T CHL00195 358 -------------------KSPVFVVATANNID----------------------------------------------- 371 (489)
T ss_pred -------------------CCceEEEEecCChh-----------------------------------------------
Confidence 13467777776321
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.++|+++ +|||.++.++.++.++..+|++..+... . ....++..++.|++. +.++..++|+
T Consensus 372 ---~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~-----------~-~~~~~~~dl~~La~~--T~GfSGAdI~ 434 (489)
T CHL00195 372 ---LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF-----------R-PKSWKKYDIKKLSKL--SNKFSGAEIE 434 (489)
T ss_pred ---hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc-----------C-CCcccccCHHHHHhh--cCCCCHHHHH
Confidence 2456776 5999999999999999999998743221 0 011234457788884 6678889999
Q ss_pred HHHHHHHHHHHhc
Q 005663 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
+++..++..+..+
T Consensus 435 ~lv~eA~~~A~~~ 447 (489)
T CHL00195 435 QSIIEAMYIAFYE 447 (489)
T ss_pred HHHHHHHHHHHHc
Confidence 9998888777643
No 47
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=1.7e-18 Score=188.92 Aligned_cols=224 Identities=21% Similarity=0.306 Sum_probs=159.7
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005663 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
.....+||.+...+.+.+.+.. .+.. ..+||++|++||||+++|++|+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~--------------~ap~----------------~~~vLi~GetGtGKel~A~~iH~~ 124 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA--------------YAPS----------------GLPVLIIGETGTGKELFARLIHAL 124 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh--------------hCCC----------------CCcEEEecCCCccHHHHHHHHHHh
Confidence 3344579999999998888851 1111 279999999999999999999533
Q ss_pred ----hCCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHH
Q 005663 354 ----VNVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 354 ----l~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~v 425 (684)
...||+.+||+.+.+ +..+|+..+.. +.......+.++.+.+|+||||||+.|++. .
T Consensus 125 s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaf-tGa~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~ 189 (403)
T COG1221 125 SARRAEAPFIAFNCAAYSENLQEAELFGHEKGAF-TGAQGGKAGLFEQANGGTLFLDEIHRLPPE--------------G 189 (403)
T ss_pred hhcccCCCEEEEEHHHhCcCHHHHHHhcccccee-ecccCCcCchheecCCCEEehhhhhhCCHh--------------H
Confidence 367999999999975 45777774443 345666778899999999999999999998 9
Q ss_pred HHHHHHHHhcc-eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005663 426 QQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 426 q~~LL~~LEg~-~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~ 504 (684)
|.+||++||.+ ..+| |+ . .....++.+||+++ .++++.+..+
T Consensus 190 Q~kLl~~le~g~~~rv---G~-----~---~~~~~dVRli~AT~-~~l~~~~~~g------------------------- 232 (403)
T COG1221 190 QEKLLRVLEEGEYRRV---GG-----S---QPRPVDVRLICATT-EDLEEAVLAG------------------------- 232 (403)
T ss_pred HHHHHHHHHcCceEec---CC-----C---CCcCCCceeeeccc-cCHHHHHHhh-------------------------
Confidence 99999999943 3333 21 1 12344577777765 3444444321
Q ss_pred hhhhhhhhccchhHHhcCCChhhhc-ccceEEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCcee-ecCHHHHHH
Q 005663 505 VTSSLMETVKSSDLIAYGLIPEFVG-RFPVLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRL 580 (684)
Q Consensus 505 ~~~~ll~~v~~~dli~~~f~PeLl~-R~d~iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~l-~iteeAl~~ 580 (684)
..|.. |+..+|.++||.+ +|+..++..+ .+++...+ +..+ ..++++++.
T Consensus 233 --------------------~dl~~rl~~~~I~LPpLrER~~Di~~L~e~F----l~~~~~~l---~~~~~~~~~~a~~~ 285 (403)
T COG1221 233 --------------------ADLTRRLNILTITLPPLRERKEDILLLAEHF----LKSEARRL---GLPLSVDSPEALRA 285 (403)
T ss_pred --------------------cchhhhhcCceecCCChhhchhhHHHHHHHH----HHHHHHHc---CCCCCCCCHHHHHH
Confidence 34555 6677899999988 5555555543 34443333 2233 344799999
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005663 581 IAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 581 La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
|.. |+|++|+|+|+++|++++..+-.
T Consensus 286 L~~--y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 286 LLA--YDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHh--CCCCCcHHHHHHHHHHHHHHhcc
Confidence 998 78888999999999999987643
No 48
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.7e-18 Score=190.86 Aligned_cols=222 Identities=26% Similarity=0.325 Sum_probs=155.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|-|.+.....|.+.+. |.++..... . .+ -.|+++|||+||||||||.||++||.+++.||
T Consensus 192 iGG~d~~~~el~~li~-~i~~Pe~~~----~--------------lG-v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 192 IGGLDKTLAELCELII-HIKHPEVFS----S--------------LG-VRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred ccChHHHHHHHHHHHH-HhcCchhHh----h--------------cC-CCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 6899999999998885 233211100 0 11 13458999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++.++. +|+.|++ ++.++++|..+.. ..+||+||||||.+.++|.. .+++ ..+++..+||..||+-..
T Consensus 252 ~~isApeiv-SGvSGES-EkkiRelF~~A~~----~aPcivFiDeIDAI~pkRe~--aqre-MErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 252 LSISAPEIV-SGVSGES-EKKIRELFDQAKS----NAPCIVFIDEIDAITPKREE--AQRE-MERRIVAQLLTSMDELSN 322 (802)
T ss_pred Eeecchhhh-cccCccc-HHHHHHHHHHHhc----cCCeEEEeecccccccchhh--HHHH-HHHHHHHHHHHhhhcccc
Confidence 999999999 8999999 7899999998865 68999999999999999775 2233 334599999999994211
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.. -+...+++|.++|..|
T Consensus 323 --------~~-------~~g~~VlVIgATnRPD----------------------------------------------- 340 (802)
T KOG0733|consen 323 --------EK-------TKGDPVLVIGATNRPD----------------------------------------------- 340 (802)
T ss_pred --------cc-------cCCCCeEEEecCCCCc-----------------------------------------------
Confidence 00 1223377787776433
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.|+ +|||.-|.+.-+++....+|++..+..+ ... ..|+ .+.||+ .++++=.-.|.
T Consensus 341 ---slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l--------rl~---g~~d---~~qlA~--lTPGfVGADL~ 401 (802)
T KOG0733|consen 341 ---SLDPALRRAGRFDREICLGVPSETAREEILRIICRGL--------RLS---GDFD---FKQLAK--LTPGFVGADLM 401 (802)
T ss_pred ---ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC--------CCC---CCcC---HHHHHh--cCCCccchhHH
Confidence 1234443 8999999999999999999998633221 111 1222 456676 34444334677
Q ss_pred HHHHHHHHHHHhcC
Q 005663 597 SLLENILMDAMYEI 610 (684)
Q Consensus 597 ~iIe~~l~~al~e~ 610 (684)
.++..+-.-++-++
T Consensus 402 AL~~~Aa~vAikR~ 415 (802)
T KOG0733|consen 402 ALCREAAFVAIKRI 415 (802)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665544444333
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-17 Score=188.76 Aligned_cols=220 Identities=25% Similarity=0.341 Sum_probs=164.8
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
+.|.+.+|+.+.+++....++...... .+ -.++.++||+||||||||++|+++|..++.+|
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~----~~---------------~~~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRK----LG---------------LRPPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHh----cC---------------CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 678999999999999866665432111 00 01236999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++.+++. ++|+|+. ++.++.+|..+. ...++||||||||++...|+.. .+...+++.+.||..|+|-.
T Consensus 305 i~v~~~~l~-sk~vGes-ek~ir~~F~~A~----~~~p~iiFiDEiDs~~~~r~~~---~~~~~~r~~~~lL~~~d~~e- 374 (494)
T COG0464 305 ISVKGSELL-SKWVGES-EKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPS---EDGSGRRVVGQLLTELDGIE- 374 (494)
T ss_pred EEeeCHHHh-ccccchH-HHHHHHHHHHHH----cCCCcEEEEEchhhhhccCCCC---CchHHHHHHHHHHHHhcCCC-
Confidence 999999888 7899998 899999998875 3688999999999999986542 22233569999999998522
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
..+++++|.++|..+
T Consensus 375 ------------------~~~~v~vi~aTN~p~----------------------------------------------- 389 (494)
T COG0464 375 ------------------KAEGVLVIAATNRPD----------------------------------------------- 389 (494)
T ss_pred ------------------ccCceEEEecCCCcc-----------------------------------------------
Confidence 234466777776432
Q ss_pred HhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCcee-ecCHHHHHHHHHhcCCCCCChHHH
Q 005663 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 i~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l-~iteeAl~~La~~a~~~~~GAR~L 595 (684)
.+.|+++. |||.++.+++++.++..+|+...+... .. ..++-.++.+++ ...++-...+
T Consensus 390 ---~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~-------------~~~~~~~~~~~~l~~--~t~~~sgadi 451 (494)
T COG0464 390 ---DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK-------------KPPLAEDVDLEELAE--ITEGYSGADI 451 (494)
T ss_pred ---ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc-------------CCcchhhhhHHHHHH--HhcCCCHHHH
Confidence 13355555 999999999999999999998743211 11 123445666666 3444666789
Q ss_pred HHHHHHHHHHHHhcC
Q 005663 596 RSLLENILMDAMYEI 610 (684)
Q Consensus 596 r~iIe~~l~~al~e~ 610 (684)
..+++.+...++.+.
T Consensus 452 ~~i~~ea~~~~~~~~ 466 (494)
T COG0464 452 AALVREAALEALREA 466 (494)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887765
No 50
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.76 E-value=2.5e-17 Score=186.40 Aligned_cols=218 Identities=24% Similarity=0.306 Sum_probs=148.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+|++++|+.+.+.+.. ++...... ..+ . .++.++||+||||||||++|+++|..++.+|
T Consensus 57 i~g~~~~k~~l~~~~~~-l~~~~~~~----~~g--------------~-~~~~giLL~GppGtGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDF-LKNPSKFT----KLG--------------A-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred hCCHHHHHHHHHHHHHH-HHCHHHHH----hcC--------------C-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 69999999999987752 22110000 000 0 1237899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|.|.. .+.++.+|..+. ...++||||||||.+...+.....+.+...+.+++.||..||+..
T Consensus 117 ~~i~~~~~~-~~~~g~~-~~~l~~~f~~a~----~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~- 189 (495)
T TIGR01241 117 FSISGSDFV-EMFVGVG-ASRVRDLFEQAK----KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG- 189 (495)
T ss_pred eeccHHHHH-HHHhccc-HHHHHHHHHHHH----hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc-
Confidence 999998886 4577776 567788877653 246799999999999987654322334445568888999888421
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+|+|..+
T Consensus 190 ------------------~~~~v~vI~aTn~~~----------------------------------------------- 204 (495)
T TIGR01241 190 ------------------TNTGVIVIAATNRPD----------------------------------------------- 204 (495)
T ss_pred ------------------CCCCeEEEEecCChh-----------------------------------------------
Confidence 123477777776321
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.|+ +|||..+.++.++.++..+|++..+... .+. ++..+..+++. ..++..++|+
T Consensus 205 ---~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~-------------~~~-~~~~l~~la~~--t~G~sgadl~ 265 (495)
T TIGR01241 205 ---VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK-------------KLA-PDVDLKAVARR--TPGFSGADLA 265 (495)
T ss_pred ---hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC-------------CCC-cchhHHHHHHh--CCCCCHHHHH
Confidence 1335555 5999999999999999999987632111 111 23345566663 4455567888
Q ss_pred HHHHHHHHHHH
Q 005663 597 SLLENILMDAM 607 (684)
Q Consensus 597 ~iIe~~l~~al 607 (684)
++++++...+.
T Consensus 266 ~l~~eA~~~a~ 276 (495)
T TIGR01241 266 NLLNEAALLAA 276 (495)
T ss_pred HHHHHHHHHHH
Confidence 88877655443
No 51
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=1.4e-17 Score=196.46 Aligned_cols=221 Identities=22% Similarity=0.306 Sum_probs=161.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|.|++.+|+.|.+.+..+.+....... .+. .++.++||+||||||||++|+++|+.++.+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~----~g~---------------~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEK----MGI---------------RPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHh----cCC---------------CCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3789999999999998744332111110 000 124789999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|++ +..++.+|..+. ...++||||||||.+.+.++... .....+++.++||..|+|.
T Consensus 515 fi~v~~~~l~-~~~vGes-e~~i~~~f~~A~----~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~- 585 (733)
T TIGR01243 515 FIAVRGPEIL-SKWVGES-EKAIREIFRKAR----QAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGI- 585 (733)
T ss_pred EEEEehHHHh-hcccCcH-HHHHHHHHHHHH----hcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcc-
Confidence 9999999987 6799998 778899988764 35789999999999988764321 1223456889999999852
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
....++++|+|+|..+
T Consensus 586 ------------------~~~~~v~vI~aTn~~~---------------------------------------------- 601 (733)
T TIGR01243 586 ------------------QELSNVVVIAATNRPD---------------------------------------------- 601 (733)
T ss_pred ------------------cCCCCEEEEEeCCChh----------------------------------------------
Confidence 1234688888877322
Q ss_pred HHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC-HHHHHHHHHhcCCCCCChHH
Q 005663 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 li~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it-eeAl~~La~~a~~~~~GAR~ 594 (684)
.+.|.++ +|||.++.++.++.++..+|++.... .+.++ +..++.|++. ..++...+
T Consensus 602 ----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~---------------~~~~~~~~~l~~la~~--t~g~sgad 660 (733)
T TIGR01243 602 ----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR---------------SMPLAEDVDLEELAEM--TEGYTGAD 660 (733)
T ss_pred ----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc---------------CCCCCccCCHHHHHHH--cCCCCHHH
Confidence 1346666 59999999999999999999864211 12222 2236778874 55677789
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005663 595 LRSLLENILMDAMYEIP 611 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~ 611 (684)
|+++++.+...++.+..
T Consensus 661 i~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 661 IEAVCREAAMAALRESI 677 (733)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999998888877653
No 52
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.75 E-value=2.8e-17 Score=180.99 Aligned_cols=221 Identities=21% Similarity=0.281 Sum_probs=151.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|.|++.+|+.|.+.+..++.+..... ..+. .++.++||+||||||||++|+++|+.++.+|
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~----~~Gl---------------~~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYE----QIGI---------------DPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHH----hcCC---------------CCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 79999999999999975544321111 0111 1248999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+.++.+. ..|+|+. ...++.+|..+. ...++||||||||.+...+.+.+.+.+....++...||..|+|..
T Consensus 208 i~i~~s~l~-~k~~ge~-~~~lr~lf~~A~----~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~- 280 (398)
T PTZ00454 208 IRVVGSEFV-QKYLGEG-PRMVRDVFRLAR----ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD- 280 (398)
T ss_pred EEEehHHHH-HHhcchh-HHHHHHHHHHHH----hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC-
Confidence 999998886 5688887 567788876543 357899999999999877543322233222234445555555310
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++.+|+++|..+
T Consensus 281 ------------------~~~~v~VI~aTN~~d----------------------------------------------- 295 (398)
T PTZ00454 281 ------------------QTTNVKVIMATNRAD----------------------------------------------- 295 (398)
T ss_pred ------------------CCCCEEEEEecCCch-----------------------------------------------
Confidence 123567787776321
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.++ +|||..|.|+.++.++...|++..+. ..+..- +-.+..+++. ..++..++|+
T Consensus 296 ---~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~-----------~~~l~~---dvd~~~la~~--t~g~sgaDI~ 356 (398)
T PTZ00454 296 ---TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS-----------KMNLSE---EVDLEDFVSR--PEKISAADIA 356 (398)
T ss_pred ---hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh-----------cCCCCc---ccCHHHHHHH--cCCCCHHHHH
Confidence 2345555 59999999999999999888875221 111111 1225566663 5677789999
Q ss_pred HHHHHHHHHHHhc
Q 005663 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
+++..+...++.+
T Consensus 357 ~l~~eA~~~A~r~ 369 (398)
T PTZ00454 357 AICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHHc
Confidence 9999988877654
No 53
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.4e-18 Score=170.72 Aligned_cols=212 Identities=25% Similarity=0.398 Sum_probs=153.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|-|.++.++.+.+.+..+.+...-.. ..|. ..|.++||+||||||||+||+++|......
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~----aLGI---------------aQPKGvlLygppgtGktLlaraVahht~c~ 208 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFE----ALGI---------------AQPKGVLLYGPPGTGKTLLARAVAHHTDCT 208 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHH----hcCC---------------CCCcceEEecCCCCchhHHHHHHHhhcceE
Confidence 477999999999999875554322111 0111 124799999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh---
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--- 434 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE--- 434 (684)
|++++.+++. ..|+|++ ...++++|-.++. ..++|||.||||.+...|..++.++|.. +|..+|++|.
T Consensus 209 firvsgselv-qk~igeg-srmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdse---vqrtmlellnqld 279 (404)
T KOG0728|consen 209 FIRVSGSELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSE---VQRTMLELLNQLD 279 (404)
T ss_pred EEEechHHHH-HHHhhhh-HHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHH---HHHHHHHHHHhcc
Confidence 9999999999 5799998 7899999987764 5789999999999999887766665543 7777777775
Q ss_pred cceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhcc
Q 005663 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVK 514 (684)
Q Consensus 435 g~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~ 514 (684)
|. -.++|+-+|+++|..|+
T Consensus 280 gf-------------------eatknikvimatnridi------------------------------------------ 298 (404)
T KOG0728|consen 280 GF-------------------EATKNIKVIMATNRIDI------------------------------------------ 298 (404)
T ss_pred cc-------------------ccccceEEEEecccccc------------------------------------------
Confidence 32 25778999999885431
Q ss_pred chhHHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCCh
Q 005663 515 SSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 515 ~~dli~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GA 592 (684)
+.|.|+ +|+|..|.|++++++...+|++..-..+ --.+|+. ++.++++ +..-.||
T Consensus 299 --------ld~allrpgridrkiefp~p~e~ar~~ilkihsrkm-------nl~rgi~-------l~kiaek-m~gasga 355 (404)
T KOG0728|consen 299 --------LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-------NLTRGIN-------LRKIAEK-MPGASGA 355 (404)
T ss_pred --------ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-------chhcccC-------HHHHHHh-CCCCccc
Confidence 223333 7999999999999999999987532111 0112222 4667776 4544554
Q ss_pred HHHHHHHHHH
Q 005663 593 RGLRSLLENI 602 (684)
Q Consensus 593 R~Lr~iIe~~ 602 (684)
+++.+...+
T Consensus 356 -evk~vctea 364 (404)
T KOG0728|consen 356 -EVKGVCTEA 364 (404)
T ss_pred -hhhhhhhhh
Confidence 566555443
No 54
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.74 E-value=2.1e-17 Score=183.54 Aligned_cols=248 Identities=18% Similarity=0.329 Sum_probs=161.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++++.|++||||+++|+++.... ..||+.+||..+.+ ..++|+..+. +........+.++.+.+|+|||||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGA-FTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCC-cCCCccCCCCceeECCCCEEEEec
Confidence 688999999999999999998776 46899999998752 1122221100 000011223456678899999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
|+.|+.. +|..|+++++.+.+. +.+....+ ..++.+|++++ .++++.+.++
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~-------~~~~~~~~---~~~~rii~~~~-~~l~~~~~~~---- 292 (445)
T TIGR02915 242 IGDLPLN--------------LQAKLLRFLQERVIE-------RLGGREEI---PVDVRIVCATN-QDLKRMIAEG---- 292 (445)
T ss_pred hhhCCHH--------------HHHHHHHHHhhCeEE-------eCCCCcee---eeceEEEEecC-CCHHHHHHcC----
Confidence 9999998 999999999843332 11111111 23466666655 3455444433
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|.++|+.|+.. .|.++||.+ +|+..++..++..+..++
T Consensus 293 --------------------------------------~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~ 334 (445)
T TIGR02915 293 --------------------------------------TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFAREL 334 (445)
T ss_pred --------------------------------------CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHh
Confidence 467888888864 678888877 788888877555543332
Q ss_pred HHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCccc-CCCcc
Q 005663 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RGCGA 639 (684)
Q Consensus 561 ~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~-~~~~~ 639 (684)
.+ ....+++++++.|.. |+|++|.|+|+++|++++..+-.. .|+.+.+.... .....
T Consensus 335 ~~------~~~~~~~~a~~~L~~--~~wpgNvreL~~~i~~a~~~~~~~--------------~i~~~~l~~~~~~~~~~ 392 (445)
T TIGR02915 335 KR------KTKGFTDDALRALEA--HAWPGNVRELENKVKRAVIMAEGN--------------QITAEDLGLDARERAET 392 (445)
T ss_pred CC------CCCCCCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhCCCC--------------cccHHHcCCcccccccc
Confidence 11 135699999999999 678888999999999988643211 12222222000 00000
Q ss_pred eEEcCCChHHHHHHHhhhhhhhhccccCCCCC
Q 005663 640 KILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 640 ~i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
. ....+..++++.|++.|...+..++|+.
T Consensus 393 ~---~~~~l~~~~~~~E~~~i~~al~~~~gn~ 421 (445)
T TIGR02915 393 P---LEVNLREVRERAEREAVRKAIARVDGNI 421 (445)
T ss_pred c---cccCHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 0 0124667788899999999999888875
No 55
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.74 E-value=3.9e-17 Score=179.64 Aligned_cols=221 Identities=24% Similarity=0.344 Sum_probs=151.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|.|.+++++.|.+.+..+..+..... ..+. .++.++||+||||||||++|+++|+.++.+
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~----~~g~---------------~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFE----EVGI---------------EPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHH----hcCC---------------CCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 379999999999999875444321110 0111 124789999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+...+.+. ...++..|++++..-
T Consensus 193 ~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~---~~~~~~~l~~lL~~l- 262 (389)
T PRK03992 193 FIRVVGSELV-QKFIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSG---DREVQRTLMQLLAEM- 262 (389)
T ss_pred EEEeehHHHh-Hhhccch-HHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCc---cHHHHHHHHHHHHhc-
Confidence 9999999987 5688887 6777888776532 4679999999999987654322222 223666666666410
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
++ .....++.+|+|+|..+
T Consensus 263 -----d~----------~~~~~~v~VI~aTn~~~---------------------------------------------- 281 (389)
T PRK03992 263 -----DG----------FDPRGNVKIIAATNRID---------------------------------------------- 281 (389)
T ss_pred -----cc----------cCCCCCEEEEEecCChh----------------------------------------------
Confidence 00 00123577788776321
Q ss_pred HHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC-HHHHHHHHHhcCCCCCChHH
Q 005663 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 li~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it-eeAl~~La~~a~~~~~GAR~ 594 (684)
.+.+.++ +|||..|.+++++.++..+|++..+. .+.+. +..+..|++. ..++..+.
T Consensus 282 ----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~---------------~~~~~~~~~~~~la~~--t~g~sgad 340 (389)
T PRK03992 282 ----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR---------------KMNLADDVDLEELAEL--TEGASGAD 340 (389)
T ss_pred ----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc---------------cCCCCCcCCHHHHHHH--cCCCCHHH
Confidence 1335555 59999999999999999999975211 11111 1235667774 56777889
Q ss_pred HHHHHHHHHHHHHhc
Q 005663 595 LRSLLENILMDAMYE 609 (684)
Q Consensus 595 Lr~iIe~~l~~al~e 609 (684)
|+.++..+...++.+
T Consensus 341 l~~l~~eA~~~a~~~ 355 (389)
T PRK03992 341 LKAICTEAGMFAIRD 355 (389)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999888777654
No 56
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.73 E-value=3.3e-17 Score=192.10 Aligned_cols=222 Identities=19% Similarity=0.328 Sum_probs=152.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|++.+++.+.+.+. + ++.+ ..+|||+||+|||||++|++|....
T Consensus 377 ~liG~S~~~~~~~~~~~----~----------~a~~----------------~~pVLI~GE~GTGK~~lA~~ih~~s~r~ 426 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVE----M----------VAQS----------------DSTVLILGETGTGKELIARAIHNLSGRN 426 (686)
T ss_pred ceeecCHHHHHHHHHHH----H----------HhCC----------------CCCEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 47899988888887774 1 1111 1689999999999999999998765
Q ss_pred CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ ..++|...+. +........+.++.+.+|+||||||+.++.. +|..|+
T Consensus 427 ~~~~v~i~c~~~~~~~~~~~lfg~~~~~-~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~ 491 (686)
T PRK15429 427 NRRMVKMNCAAMPAGLLESDLFGHERGA-FTGASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLL 491 (686)
T ss_pred CCCeEEEecccCChhHhhhhhcCccccc-ccccccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHH
Confidence 57999999998752 2233332111 0000011123456678899999999999998 999999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
++|+...+.- .| ....+ ..++.+|++++ .++++.+..+
T Consensus 492 ~~l~~~~~~~--~g-----~~~~~---~~~~RiI~~t~-~~l~~~~~~~------------------------------- 529 (686)
T PRK15429 492 RVLQEQEFER--LG-----SNKII---QTDVRLIAATN-RDLKKMVADR------------------------------- 529 (686)
T ss_pred HHHHhCCEEe--CC-----CCCcc---cceEEEEEeCC-CCHHHHHHcC-------------------------------
Confidence 9998433220 11 11111 23455666654 3455444333
Q ss_pred hhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCcee-ecCHHHHHHHHHhcC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRLIAKKAI 586 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~l-~iteeAl~~La~~a~ 586 (684)
.|.++|+.|+.. .|.++||.+ +|+..++..++..+.+++ +..+ .+++++++.|.. |
T Consensus 530 -----------~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~~~s~~al~~L~~--y 589 (686)
T PRK15429 530 -----------EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM-------GRNIDSIPAETLRTLSN--M 589 (686)
T ss_pred -----------cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc-------CCCCCCcCHHHHHHHHh--C
Confidence 477888999876 588899987 788888876554443332 2233 599999999999 7
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q 005663 587 SKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~a 606 (684)
+|++|+|+|+++|++++..+
T Consensus 590 ~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 590 EWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CCCCcHHHHHHHHHHHHHhC
Confidence 88999999999999998753
No 57
>CHL00176 ftsH cell division protein; Validated
Probab=99.72 E-value=9.3e-17 Score=185.88 Aligned_cols=218 Identities=24% Similarity=0.329 Sum_probs=150.8
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+|.+++|+.+.+.+.. .+...... ..+ . ..+.++||+||||||||++|+++|..++.||
T Consensus 185 v~G~~~~k~~l~eiv~~-lk~~~~~~----~~g--------------~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSF-LKKPERFT----AVG--------------A-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred ccChHHHHHHHHHHHHH-HhCHHHHh----hcc--------------C-CCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 79999999999988741 12111000 000 0 1137899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..+.|.. ...++.+|..+. ...++||||||||.+...++....+.+...+.+++.||..|||..
T Consensus 245 i~is~s~f~-~~~~g~~-~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~- 317 (638)
T CHL00176 245 FSISGSEFV-EMFVGVG-AARVRDLFKKAK----ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK- 317 (638)
T ss_pred eeccHHHHH-HHhhhhh-HHHHHHHHHHHh----cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-
Confidence 999999886 4466665 456777777654 256899999999999887654433444455567788888887421
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+++|..+
T Consensus 318 ------------------~~~~ViVIaaTN~~~----------------------------------------------- 332 (638)
T CHL00176 318 ------------------GNKGVIVIAATNRVD----------------------------------------------- 332 (638)
T ss_pred ------------------CCCCeeEEEecCchH-----------------------------------------------
Confidence 123477777776321
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.|+ +|||..+.+..++.++..+|++..+.. ....++..+..|++. ..++..++|+
T Consensus 333 ---~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--------------~~~~~d~~l~~lA~~--t~G~sgaDL~ 393 (638)
T CHL00176 333 ---ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN--------------KKLSPDVSLELIARR--TPGFSGADLA 393 (638)
T ss_pred ---hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh--------------cccchhHHHHHHHhc--CCCCCHHHHH
Confidence 0123343 599999999999999999999764321 111334567777774 4556778999
Q ss_pred HHHHHHHHHHH
Q 005663 597 SLLENILMDAM 607 (684)
Q Consensus 597 ~iIe~~l~~al 607 (684)
+++.++...+.
T Consensus 394 ~lvneAal~a~ 404 (638)
T CHL00176 394 NLLNEAAILTA 404 (638)
T ss_pred HHHHHHHHHHH
Confidence 99988766554
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.72 E-value=3.8e-17 Score=175.70 Aligned_cols=170 Identities=26% Similarity=0.389 Sum_probs=126.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.+.+||||||||||++|+.||+..+.+|..+++..-. -+.+++.++.+........+.||||||||++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 7899999999999999999999999999999986532 3456666666544333456789999999999988
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcc
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~ 490 (684)
.|+.||..||.+. +++|.+++-+ +
T Consensus 120 --------------QQD~lLp~vE~G~-----------------------iilIGATTEN-------------------P 143 (436)
T COG2256 120 --------------QQDALLPHVENGT-----------------------IILIGATTEN-------------------P 143 (436)
T ss_pred --------------hhhhhhhhhcCCe-----------------------EEEEeccCCC-------------------C
Confidence 9999999999221 4555554310 0
Q ss_pred cccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCce
Q 005663 491 VRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~ 570 (684)
.+.+.|.|++|.- ++.|.+|+.+|+.+++.+.+....+ ...+..
T Consensus 144 -----------------------------sF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~r------gl~~~~ 187 (436)
T COG2256 144 -----------------------------SFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEER------GLGGQI 187 (436)
T ss_pred -----------------------------CeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhhc------CCCccc
Confidence 1135688888887 7899999999999999873222211 112335
Q ss_pred eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+.++++++++|+..+ ++.+|.+-+.+|-+..
T Consensus 188 ~~i~~~a~~~l~~~s---~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 188 IVLDEEALDYLVRLS---NGDARRALNLLELAAL 218 (436)
T ss_pred ccCCHHHHHHHHHhc---CchHHHHHHHHHHHHH
Confidence 669999999999963 5668988888886554
No 59
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.72 E-value=6.2e-17 Score=171.19 Aligned_cols=241 Identities=19% Similarity=0.270 Sum_probs=159.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++|+.|++||||.++||+..... ..||+.+||+.+.+ +..+|+..+ -+.+.+.++.+.+|++||||
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg------~~gk~GffE~AngGTVlLDe 301 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG------DEGKKGFFEQANGGTVLLDE 301 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCC------CCCccchhhhccCCeEEeeh
Confidence 688999999999999999986555 68999999998853 445555432 12345678899999999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHh-cceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhcccc
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~ 482 (684)
|..+++. .|.+||+.|. |+.-+| +....+-+| +-+||+ +..+|.+++.++.++
T Consensus 302 IgEmSp~--------------lQaKLLRFL~DGtFRRV--------Gee~Ev~vd---VRVIca-tq~nL~~lv~~g~fR 355 (511)
T COG3283 302 IGEMSPR--------------LQAKLLRFLNDGTFRRV--------GEDHEVHVD---VRVICA-TQVNLVELVQKGKFR 355 (511)
T ss_pred hhhcCHH--------------HHHHHHHHhcCCceeec--------CCcceEEEE---EEEEec-ccccHHHHHhcCchH
Confidence 9999998 9999999997 444333 333334444 555655 457899999888777
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHH
Q 005663 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (684)
Q Consensus 483 ~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~ 562 (684)
.+++|+.++-... .|+|+.|.+. +.-+++.+ .+|+..
T Consensus 356 eDLfyRLNVLtl~----------------------------~PpLRer~~d-----------i~pL~e~F----v~q~s~ 392 (511)
T COG3283 356 EDLFYRLNVLTLN----------------------------LPPLRERPQD-----------IMPLAELF----VQQFSD 392 (511)
T ss_pred HHHHHHhheeeec----------------------------CCccccCccc-----------chHHHHHH----HHHHHH
Confidence 7777766654321 2555555543 34444443 334433
Q ss_pred HHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEE-EechhccCcccCCCcceE
Q 005663 563 MFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAV-VVDEEAVGSEDRGCGAKI 641 (684)
Q Consensus 563 ~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v-~vdee~v~~~~~~~~~~i 641 (684)
.++.- ..+++++.+.+|.+ |.|++|+|+|+|+|-+++...-.... .|..+ +.+-++.. ...-
T Consensus 393 elg~p--~pkl~~~~~~~L~~--y~WpGNVRqL~N~iyRA~s~~Eg~~l-------~i~~i~Lp~~~~~~------~~~~ 455 (511)
T COG3283 393 ELGVP--RPKLAADLLTVLTR--YAWPGNVRQLKNAIYRALTLLEGYEL-------RIEDILLPDYDAAT------VVGE 455 (511)
T ss_pred HhCCC--CCccCHHHHHHHHH--cCCCccHHHHHHHHHHHHHHhccCcc-------chhhcccCCccccc------ccch
Confidence 33332 66799999999999 78888999999999887753311110 11111 11111100 0001
Q ss_pred EcCCChHHHHHHHhhhhhhhhc
Q 005663 642 LYGKGALDRYLAQHKRKDLETN 663 (684)
Q Consensus 642 ~~~~g~l~~~l~~~~~~~~~~~ 663 (684)
...+|.|+..++.+|+...+.-
T Consensus 456 ~~~~gsLdei~~~fE~~VL~rl 477 (511)
T COG3283 456 DALEGSLDEIVSRFERSVLTRL 477 (511)
T ss_pred hhccCCHHHHHHHHHHHHHHHH
Confidence 2247889999999998776653
No 60
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.4e-17 Score=182.22 Aligned_cols=219 Identities=29% Similarity=0.404 Sum_probs=161.7
Q ss_pred ccChHHHHHHHHHHHHhh--hhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 279 VIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
|-|..++|+.|.+.+.++ |..++....-|. ..++|||||||||||+||-++|..++.
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~---------------------~~giLLyGppGcGKT~la~a~a~~~~~ 727 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL---------------------RTGILLYGPPGCGKTLLASAIASNSNL 727 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCccc---------------------ccceEEECCCCCcHHHHHHHHHhhCCe
Confidence 789999999999999854 445555443221 279999999999999999999999999
Q ss_pred CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcc
Q 005663 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
.|+.+...++. .+|+|.+ ++.++.+|.++. +++|||||+||+|.+.++|+.. +..+++ +|.++||..|||-
T Consensus 728 ~fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~----~a~PCiLFFDEfdSiAPkRGhD--sTGVTD-RVVNQlLTelDG~ 798 (952)
T KOG0735|consen 728 RFISVKGPELL-SKYIGAS-EQNVRDLFERAQ----SAKPCILFFDEFDSIAPKRGHD--STGVTD-RVVNQLLTELDGA 798 (952)
T ss_pred eEEEecCHHHH-HHHhccc-HHHHHHHHHHhh----ccCCeEEEeccccccCcccCCC--CCCchH-HHHHHHHHhhccc
Confidence 99999999998 7899999 789999999875 4899999999999999997753 233333 4999999999974
Q ss_pred eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccch
Q 005663 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
.. ...+.++.+++..||
T Consensus 799 Eg-------------------l~GV~i~aaTsRpdl-------------------------------------------- 815 (952)
T KOG0735|consen 799 EG-------------------LDGVYILAATSRPDL-------------------------------------------- 815 (952)
T ss_pred cc-------------------cceEEEEEecCCccc--------------------------------------------
Confidence 32 122444444432221
Q ss_pred hHHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHH
Q 005663 517 DLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 517 dli~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~ 594 (684)
+.|.|+ +|+|..|.-+.+++.+..+|++.--+. ...-++..++.++.. +.++..-.
T Consensus 816 ------iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s--------------~~~~~~vdl~~~a~~--T~g~tgAD 873 (952)
T KOG0735|consen 816 ------IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNS--------------LLKDTDVDLECLAQK--TDGFTGAD 873 (952)
T ss_pred ------cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhc--------------cCCccccchHHHhhh--cCCCchhh
Confidence 123333 899999988999999999988752221 112234557888885 45555568
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 005663 595 LRSLLENILMDAMYEIPD 612 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~~ 612 (684)
|+.++-.+=+.++.++..
T Consensus 874 lq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 874 LQSLLYNAQLAAVHEILK 891 (952)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888777666665544
No 61
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.72 E-value=1.3e-16 Score=179.94 Aligned_cols=183 Identities=23% Similarity=0.303 Sum_probs=130.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|.|++..++.+..++...+.+...... .+. .++.++||+||||||||++|+++|+.++.+
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~----~gl---------------~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i 244 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYRE----YDL---------------KPPKGVLLYGPPGCGKTLIAKAVANSLAQRI 244 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHh----ccC---------------CCCcceEEECCCCCcHHHHHHHHHHhhcccc
Confidence 789999999999999754443211110 011 124789999999999999999999998654
Q ss_pred ---------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHH
Q 005663 358 ---------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 358 ---------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~ 428 (684)
|+.+..+++. ..|+|+. +..++.+|..+........++||||||||.+...|+.. .+++. ...+.++
T Consensus 245 ~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~-~s~d~-e~~il~~ 320 (512)
T TIGR03689 245 GAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG-VSSDV-ETTVVPQ 320 (512)
T ss_pred ccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC-ccchH-HHHHHHH
Confidence 5556666665 5688887 67788887765433333468999999999998775432 12222 2347788
Q ss_pred HHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhh
Q 005663 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ 508 (684)
||..|||- -...++++|+|+|..+
T Consensus 321 LL~~LDgl-------------------~~~~~ViVI~ATN~~d------------------------------------- 344 (512)
T TIGR03689 321 LLSELDGV-------------------ESLDNVIVIGASNRED------------------------------------- 344 (512)
T ss_pred HHHHhccc-------------------ccCCceEEEeccCChh-------------------------------------
Confidence 99999842 1234688888877322
Q ss_pred hhhhccchhHHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchH
Q 005663 509 LMETVKSSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 509 ll~~v~~~dli~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l 553 (684)
.+.|.++. |||..|.|+.++.++..+|++..+
T Consensus 345 -------------~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 345 -------------MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred -------------hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 24577775 999999999999999999998754
No 62
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.72 E-value=4.8e-17 Score=181.98 Aligned_cols=199 Identities=19% Similarity=0.314 Sum_probs=137.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++|+.|++|||||++|++++... +.||+.+||+.+.+ ...+|...+.. ........+.++.+.+|+|||||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~-~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF-TGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCC-CCCCcCCCCCeeECCCCEEEEec
Confidence 689999999999999999998876 46999999988752 11222221100 00000123446677889999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
|+.|+.. +|..|+++|+...+.- .| ....+ ..++.+|++++ .++++.+.++
T Consensus 241 i~~l~~~--------------~q~~L~~~l~~~~~~~--~~-----~~~~~---~~~~rii~~~~-~~l~~~~~~~---- 291 (469)
T PRK10923 241 IGDMPLD--------------VQTRLLRVLADGQFYR--VG-----GYAPV---KVDVRIIAATH-QNLEQRVQEG---- 291 (469)
T ss_pred cccCCHH--------------HHHHHHHHHhcCcEEe--CC-----CCCeE---EeeEEEEEeCC-CCHHHHHHcC----
Confidence 9999998 9999999998433220 11 11111 23566677665 3444444332
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc-eEEEecccCH--HHHHHHHhchHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|.++|+.|+. ..|.++||.+ +|+..++..+++.+..+
T Consensus 292 --------------------------------------~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~- 332 (469)
T PRK10923 292 --------------------------------------KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARE- 332 (469)
T ss_pred --------------------------------------CchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHH-
Confidence 47789999995 4788899887 78888887755444222
Q ss_pred HHHHhhCCc-eeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005663 561 RKMFQMNGV-KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 561 ~~~~~~~gv-~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
+ +. ...+++++++.|.+ |+|++|.|+|+++|++++..+
T Consensus 333 ---~---~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 333 ---L---GVEAKLLHPETEAALTR--LAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred ---c---CCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhC
Confidence 1 22 24699999999999 788889999999999998754
No 63
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.71 E-value=1.4e-16 Score=171.36 Aligned_cols=176 Identities=13% Similarity=0.217 Sum_probs=126.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchH-HhhcCCEEEEccccccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v-~~a~~gVLfIDEIdkl~ 408 (684)
|..++|+||||||||++|+++|+.++.+|+.++++++. ++|+|+. ++.++++|..+.... .+.++|||||||||.+.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 58999999999999999999999999999999999998 7899998 899999998775322 23478999999999999
Q ss_pred hhhcccccCCCCchHHHHHHHHHHHhcc-eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 409 KKAESLNISRDVSGEGVQQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg~-~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
+.+++ .++.+..+.+..+||.+||+- .+.+ .|..+. .-....+.+|+|+|..+
T Consensus 226 g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l--~G~w~~------~~~~~~V~VIaTTNrpd---------------- 279 (413)
T PLN00020 226 GRFGT--TQYTVNNQMVNGTLMNIADNPTNVSL--GGDWRE------KEEIPRVPIIVTGNDFS---------------- 279 (413)
T ss_pred CCCCC--CCcchHHHHHHHHHHHHhcCCccccc--cccccc------cccCCCceEEEeCCCcc----------------
Confidence 87652 233433444568899999841 1111 111000 01234577788887322
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
.+.|+|+. |||..+ ..++.++..+|++.. ++
T Consensus 280 ----------------------------------~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~-----------~r 312 (413)
T PLN00020 280 ----------------------------------TLYAPLIRDGRMEKFY--WAPTREDRIGVVHGI-----------FR 312 (413)
T ss_pred ----------------------------------cCCHhHcCCCCCCcee--CCCCHHHHHHHHHHH-----------hc
Confidence 24577876 999865 368899999998752 11
Q ss_pred hCCceeecCHHHHHHHHHh
Q 005663 566 MNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~ 584 (684)
+..++...+..|++.
T Consensus 313 ----~~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 313 ----DDGVSREDVVKLVDT 327 (413)
T ss_pred ----cCCCCHHHHHHHHHc
Confidence 224566777778875
No 64
>PRK15115 response regulator GlrR; Provisional
Probab=99.71 E-value=1.1e-16 Score=177.64 Aligned_cols=247 Identities=17% Similarity=0.254 Sum_probs=158.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccC----CccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~s----gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++++.|++|||||++|+++.+.. +.||+.+||..+.+. ..+|...+ .+........+.++.+.+|+|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~-~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARG-AFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcC-CCCCCccCCCCcEEECCCCEEEEEc
Confidence 688999999999999999998776 579999999987531 11111100 0000001123456677889999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
|+.|+.. +|..|+++|+...+. ..|. ... ...++.+|++++ .++++.+.++
T Consensus 237 i~~l~~~--------------~q~~L~~~l~~~~~~--~~g~-----~~~---~~~~~rii~~~~-~~l~~~~~~~---- 287 (444)
T PRK15115 237 IGDMPAP--------------LQVKLLRVLQERKVR--PLGS-----NRD---IDIDVRIISATH-RDLPKAMARG---- 287 (444)
T ss_pred cccCCHH--------------HHHHHHHHHhhCCEE--eCCC-----Cce---eeeeEEEEEeCC-CCHHHHHHcC----
Confidence 9999998 999999999843321 0111 111 123567777765 3566665544
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|.++|+.|+.. .|.++||.+ +|+..++...+..+..++
T Consensus 288 --------------------------------------~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~ 329 (444)
T PRK15115 288 --------------------------------------EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERH 329 (444)
T ss_pred --------------------------------------CccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHh
Confidence 366777777764 577777776 688888877555443322
Q ss_pred HHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCcccCCCcce
Q 005663 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAK 640 (684)
Q Consensus 561 ~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~~~~~~~ 640 (684)
.+ ....++++|++.|.. |+|++|.|+|+++|++++..+-. -.|+.+.+.....+.. .
T Consensus 330 ~~------~~~~~~~~a~~~L~~--~~WpgNvreL~~~i~~~~~~~~~--------------~~i~~~~l~~~~~~~~-~ 386 (444)
T PRK15115 330 KP------FVRAFSTDAMKRLMT--ASWPGNVRQLVNVIEQCVALTSS--------------PVISDALVEQALEGEN-T 386 (444)
T ss_pred CC------CCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhCCC--------------CccChhhhhhhhcccc-c
Confidence 11 123599999999999 78889999999999998764211 1122222221100000 0
Q ss_pred EEcCCChHHHHHHHhhhhhhhhccccCCCCC
Q 005663 641 ILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 641 i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
....+...+++.|+..|++.+..++|+.
T Consensus 387 ---~~~~~~~~~~~~E~~~i~~al~~~~gn~ 414 (444)
T PRK15115 387 ---ALPTFVEARNQFELNYLRKLLQITKGNV 414 (444)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 0113555668889999999999888875
No 65
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.5e-16 Score=180.51 Aligned_cols=174 Identities=26% Similarity=0.356 Sum_probs=137.7
Q ss_pred cccChHHHHHHHHHHHH-----hhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005663 278 FVIGQERAKKVLSVAVY-----NHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~-----~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
.|.|.++||+.+.+.|. +.|..+ +- .-|.++||+||||||||+|||++|.
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~l------------------------Ga-kiPkGvlLvGpPGTGKTLLAkAvAg 205 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQAL------------------------GA-KIPKGVLLVGPPGTGKTLLAKAVAG 205 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhc------------------------cc-ccccceeEecCCCCCcHHHHHHHhc
Confidence 37999999999999985 111110 00 1247999999999999999999999
Q ss_pred HhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHH
Q 005663 353 YVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 353 ~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
+.+.||+.++.+++.+ -|+|.. .+.++.+|..+.. +.+|||||||||.....|+.+-++++..+|+..++||..
T Consensus 206 EA~VPFf~iSGS~FVe-mfVGvG-AsRVRdLF~qAkk----~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE 279 (596)
T COG0465 206 EAGVPFFSISGSDFVE-MFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE 279 (596)
T ss_pred ccCCCceeccchhhhh-hhcCCC-cHHHHHHHHHhhc----cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh
Confidence 9999999999999995 588988 6889999988753 578999999999999999877778888999999999999
Q ss_pred HhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhh
Q 005663 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~ 512 (684)
|||..- .+.+++|.++|..|.
T Consensus 280 mDGF~~-------------------~~gviviaaTNRpdV---------------------------------------- 300 (596)
T COG0465 280 MDGFGG-------------------NEGVIVIAATNRPDV---------------------------------------- 300 (596)
T ss_pred hccCCC-------------------CCceEEEecCCCccc----------------------------------------
Confidence 996321 123666666664331
Q ss_pred ccchhHHhcCCChhhh--cccceEEEecccCHHHHHHHHhc
Q 005663 513 VKSSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 513 v~~~dli~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
+.|.|+ +|||..|..+.++-...++|++.
T Consensus 301 ----------lD~ALlRpgRFDRqI~V~~PDi~gRe~Ilkv 331 (596)
T COG0465 301 ----------LDPALLRPGRFDRQILVELPDIKGREQILKV 331 (596)
T ss_pred ----------chHhhcCCCCcceeeecCCcchhhHHHHHHH
Confidence 112222 79999999999998888888874
No 66
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.71 E-value=1.9e-16 Score=176.04 Aligned_cols=217 Identities=22% Similarity=0.339 Sum_probs=146.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|.|++..++.+.+++..+..+..... ..+ + .++.++||+||||||||++|+++|+.++.+|
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~----~~g--------------i-~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYD----DIG--------------I-KPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHH----hcC--------------C-CCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 79999999999999964333211000 000 0 1247899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHH---HHhc
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK---MLEG 435 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~---~LEg 435 (684)
+.++++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+.....+.+ ..++..++. .|+|
T Consensus 246 i~V~~seL~-~k~~Ge~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~---~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 246 LRVVGSELI-QKYLGDG-PKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGE---KEIQRTMLELLNQLDG 316 (438)
T ss_pred EEEecchhh-hhhcchH-HHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCccc---HHHHHHHHHHHHHHhh
Confidence 999999887 4688887 5677888876542 46899999999999876543222222 124444444 4442
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKS 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
. ....++.+|+++|..+
T Consensus 317 ~-------------------~~~~~V~VI~ATNr~d-------------------------------------------- 333 (438)
T PTZ00361 317 F-------------------DSRGDVKVIMATNRIE-------------------------------------------- 333 (438)
T ss_pred h-------------------cccCCeEEEEecCChH--------------------------------------------
Confidence 1 0123567777776321
Q ss_pred hhHHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHH-HHHHHHHhcCCCCCCh
Q 005663 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGA 592 (684)
Q Consensus 516 ~dli~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~itee-Al~~La~~a~~~~~GA 592 (684)
.+.|.++ +|||..|.|+.++.++..+|+...+. ++.++++ .+..++. ...++.+
T Consensus 334 ------~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~---------------k~~l~~dvdl~~la~--~t~g~sg 390 (438)
T PTZ00361 334 ------SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS---------------KMTLAEDVDLEEFIM--AKDELSG 390 (438)
T ss_pred ------HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh---------------cCCCCcCcCHHHHHH--hcCCCCH
Confidence 1235554 69999999999999999999975321 1122222 2455555 3456667
Q ss_pred HHHHHHHHHHHHHHHhc
Q 005663 593 RGLRSLLENILMDAMYE 609 (684)
Q Consensus 593 R~Lr~iIe~~l~~al~e 609 (684)
..++.++..+...++.+
T Consensus 391 AdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 391 ADIKAICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88999988877777654
No 67
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.70 E-value=1.5e-16 Score=176.93 Aligned_cols=250 Identities=16% Similarity=0.258 Sum_probs=159.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++|+.|++||||+++|+++.... +.||+.++|..+.+ ..++|...+. +........+.++.+.+|+|||||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGA-FTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCC-CCCCCCCCCCceEECCCCEEEEec
Confidence 689999999999999999997665 57999999998753 1122221100 000001123456667889999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
|+.++.. +|..|+++|+...+. ..+....+ ..++.+|++++ .++++.+.++
T Consensus 246 i~~l~~~--------------~q~~L~~~l~~~~~~-------~~~~~~~~---~~~~rii~~t~-~~l~~~~~~g---- 296 (457)
T PRK11361 246 IGEMPLV--------------LQAKLLRILQEREFE-------RIGGHQTI---KVDIRIIAATN-RDLQAMVKEG---- 296 (457)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEE-------eCCCCcee---eeceEEEEeCC-CCHHHHHHcC----
Confidence 9999998 999999999843322 01111112 23456676665 3555555544
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|.++|+.|+.. .|.++||.+ +|+..++..++..+..++
T Consensus 297 --------------------------------------~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~ 338 (457)
T PRK11361 297 --------------------------------------TFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSEN 338 (457)
T ss_pred --------------------------------------CchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHc
Confidence 366777888854 577888875 778777776544443221
Q ss_pred HHHHhhCCc-eeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCc----c-c
Q 005663 561 RKMFQMNGV-KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGS----E-D 634 (684)
Q Consensus 561 ~~~~~~~gv-~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~----~-~ 634 (684)
+. ...+++++++.|.. |+|++|+|+|+++|++++..+-.. .|+.+.+.. . .
T Consensus 339 -------~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~~~~~~~~~~~~--------------~i~~~~l~~~~~~~~~ 395 (457)
T PRK11361 339 -------QRDIIDIDPMAMSLLTA--WSWPGNIRELSNVIERAVVMNSGP--------------IIFSEDLPPQIRQPVC 395 (457)
T ss_pred -------CCCCCCcCHHHHHHHHc--CCCCCcHHHHHHHHHHHHHhCCCC--------------cccHHHChHhhhcccc
Confidence 22 35799999999999 788899999999999988643111 111111110 0 0
Q ss_pred CCCcce-EEcCCChHHHHHHHhhhhhhhhccccCCCCC
Q 005663 635 RGCGAK-ILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 635 ~~~~~~-i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
...... .......+..++++.|++.|.+.+..++|+.
T Consensus 396 ~~~~~~~~~~~~~~l~~~~~~~E~~~i~~al~~~~gn~ 433 (457)
T PRK11361 396 NAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNR 433 (457)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHhCCCH
Confidence 000000 0001135677889999999999999888875
No 68
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-16 Score=162.13 Aligned_cols=144 Identities=25% Similarity=0.369 Sum_probs=109.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|-|.+-.|+.+.+++..+.....-.. ..|. -||.++|||||||||||.|||++|+.....|
T Consensus 157 iggld~qkqeireavelplt~~~ly~----qigi---------------dpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYK----QIGI---------------DPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHH----HhCC---------------CCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 67889999999999974332211000 0111 1358999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh---c
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE---G 435 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE---g 435 (684)
+++..+++. .+|.|++ ..+++..|..+.. +.++||||||||.+..+|-....+.| +++|..|+++|. |
T Consensus 218 irvvgsefv-qkylgeg-prmvrdvfrlake----napsiifideidaiatkrfdaqtgad---revqril~ellnqmdg 288 (408)
T KOG0727|consen 218 IRVVGSEFV-QKYLGEG-PRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGAD---REVQRILIELLNQMDG 288 (408)
T ss_pred eeeccHHHH-HHHhccC-cHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhcccccccc---HHHHHHHHHHHHhccC
Confidence 999999999 5799999 6889999987754 58899999999999998876555555 346766666664 3
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCC
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~ 469 (684)
. -.+.|+-+||++|.
T Consensus 289 f-------------------dq~~nvkvimatnr 303 (408)
T KOG0727|consen 289 F-------------------DQTTNVKVIMATNR 303 (408)
T ss_pred c-------------------CcccceEEEEecCc
Confidence 1 13567888998874
No 69
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.68 E-value=5.5e-16 Score=176.79 Aligned_cols=215 Identities=23% Similarity=0.301 Sum_probs=139.8
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---- 354 (684)
++||+.+++.+..++... .+.++||+||||||||++|+++++.+
T Consensus 67 iiGqs~~i~~l~~al~~~--------------------------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~ 114 (531)
T TIGR02902 67 IIGQEEGIKALKAALCGP--------------------------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNP 114 (531)
T ss_pred eeCcHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 799999999888665300 12689999999999999999998653
Q ss_pred ------CCCEEEEecccc--ccCC----ccccchHHHH--HHH------HhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 355 ------NVPFVIADATTL--TQAG----YVGEDVESIL--YKL------LTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 355 ------~~pfv~v~~s~l--~~sg----yvG~~~~~~l--~~l------~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
+.+|+.+||+.. .+.+ .+|....... ... .+...+.++.+.+|+||||||+.|++.
T Consensus 115 ~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~---- 190 (531)
T TIGR02902 115 ASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV---- 190 (531)
T ss_pred CCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH----
Confidence 368999999742 1111 1111000000 000 112344566788999999999999998
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCc-------e--EEeeccEEEEeCCCCcCHHHHHHhccccCCC
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN-------I--QIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~-------i--~IdtsNiifI~tgn~~dLek~i~~r~~~~~l 485 (684)
.|+.||++||...+.+. ++.....+.. + .--..++.+|++++..
T Consensus 191 ----------~q~~LL~~Le~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~--------------- 243 (531)
T TIGR02902 191 ----------QMNKLLKVLEDRKVFLD--SAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRN--------------- 243 (531)
T ss_pred ----------HHHHHHHHHHhCeeeec--cccccccCcccccchhhhcccCcccceEEEEEecCC---------------
Confidence 99999999985544331 1111110000 0 0012234555554410
Q ss_pred CcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 486 GFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 Gf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
+ ..+.|++++|+. .+.|++|+.+|+.+|++..++.
T Consensus 244 -----------------------------p-----~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k---------- 278 (531)
T TIGR02902 244 -----------------------------P-----EEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEK---------- 278 (531)
T ss_pred -----------------------------c-----ccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHH----------
Confidence 0 025688999986 6789999999999999864322
Q ss_pred hCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005663 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
. .+.+++++++.|+.+ .+ +.|++.++++.+...+..
T Consensus 279 -~--~i~is~~al~~I~~y--~~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 279 -I--GINLEKHALELIVKY--AS--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred -c--CCCcCHHHHHHHHHh--hh--hHHHHHHHHHHHHHHHhh
Confidence 1 467999999999885 44 469999999998765543
No 70
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.67 E-value=4.9e-16 Score=173.33 Aligned_cols=200 Identities=18% Similarity=0.292 Sum_probs=138.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++++.|++||||+++|+++.+.. +.||+.+||..+.+ +..+|+..+. +........+.++.+.+|+|||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGA-FTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCC-CCCcccCCCCcEEECCCCeEEEEc
Confidence 678999999999999999998775 56999999998752 1122322110 001111122345567789999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
|+.|+.. +|..|+++|+...+. ..+....+.+ ++.+|++++ .++++++..+
T Consensus 237 i~~l~~~--------------~q~~ll~~l~~~~~~-------~~~~~~~~~~---~~rii~~~~-~~l~~~~~~~---- 287 (463)
T TIGR01818 237 IGDMPLD--------------AQTRLLRVLADGEFY-------RVGGRTPIKV---DVRIVAATH-QNLEALVRQG---- 287 (463)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEE-------ECCCCceeee---eeEEEEeCC-CCHHHHHHcC----
Confidence 9999988 999999999843322 0111111222 355666654 3555554433
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccC--HHHHHHHHhchHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs--~eel~~Il~~~l~~L~kqy 560 (684)
.|.++|+.|+.. .|.++||. .+|+..++..++..+.+++
T Consensus 288 --------------------------------------~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~ 329 (463)
T TIGR01818 288 --------------------------------------KFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAREL 329 (463)
T ss_pred --------------------------------------CcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHh
Confidence 467889999975 78999999 6899999887655543322
Q ss_pred HHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005663 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 561 ~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
.. ....++++|++.|.. |.|++|.|+|++++++++..+
T Consensus 330 ----~~--~~~~~~~~a~~~L~~--~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 330 ----DV--EPKLLDPEALERLKQ--LRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred ----CC--CCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhC
Confidence 11 124699999999999 688889999999999998754
No 71
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.66 E-value=1.3e-15 Score=165.83 Aligned_cols=221 Identities=25% Similarity=0.346 Sum_probs=146.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|.|.+.+++.+.+++..+..+..... ..+. .++.++||+||||||||++|+++|+.++.+
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~----~~g~---------------~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFE----EVGI---------------EPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHH----hcCC---------------CCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 479999999999999863333211000 0000 123789999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+.++++. ..|+|+. ...+..++..+. ...++||||||||.+...+.....+.+ ..++..|++++..-
T Consensus 184 ~~~v~~~~l~-~~~~g~~-~~~i~~~f~~a~----~~~p~il~iDEiD~l~~~~~~~~~~~~---~~~~~~l~~ll~~l- 253 (364)
T TIGR01242 184 FIRVVGSELV-RKYIGEG-ARLVREIFELAK----EKAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAEL- 253 (364)
T ss_pred EEecchHHHH-HHhhhHH-HHHHHHHHHHHH----hcCCcEEEhhhhhhhccccccCCCCcc---HHHHHHHHHHHHHh-
Confidence 9999988776 4577775 456667665443 246789999999999876543222222 23555666655410
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
++ .-...++.+|+|+|..+
T Consensus 254 -----d~----------~~~~~~v~vI~ttn~~~---------------------------------------------- 272 (364)
T TIGR01242 254 -----DG----------FDPRGNVKVIAATNRPD---------------------------------------------- 272 (364)
T ss_pred -----hC----------CCCCCCEEEEEecCChh----------------------------------------------
Confidence 00 00123577888876321
Q ss_pred HHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCH-HHHHHHHHhcCCCCCChHH
Q 005663 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 li~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ite-eAl~~La~~a~~~~~GAR~ 594 (684)
.+.|.++ +||+.++.++.++.++..+|+..... ...+.+ ..+..|++. ..++..+.
T Consensus 273 ----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~---------------~~~l~~~~~~~~la~~--t~g~sg~d 331 (364)
T TIGR01242 273 ----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTR---------------KMKLAEDVDLEAIAKM--TEGASGAD 331 (364)
T ss_pred ----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHh---------------cCCCCccCCHHHHHHH--cCCCCHHH
Confidence 1234444 59999999999999999999865211 111111 225667763 46677899
Q ss_pred HHHHHHHHHHHHHhc
Q 005663 595 LRSLLENILMDAMYE 609 (684)
Q Consensus 595 Lr~iIe~~l~~al~e 609 (684)
|+.++..+...++.+
T Consensus 332 l~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 332 LKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888877654
No 72
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.65 E-value=3.1e-16 Score=176.72 Aligned_cols=194 Identities=21% Similarity=0.369 Sum_probs=141.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--CCCEEEEeccccc----cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV--NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l--~~pfv~v~~s~l~----~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.++|+.|+|||||..+||+|.+.. ..||+.+||..+. ++.++||..++......+.-.+.++.+.+|++|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 789999999999999999996554 6799999999885 4778898866666555555567888999999999999
Q ss_pred cccchhhcccccCCCCchHHHHHHHHHHHh-cceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 405 dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
..|+-. +|..||++|+ |.++.| |+ ..+.||.+ +| +++..||..++.+++|+.
T Consensus 417 gd~p~~--------------~Qs~LLrVl~e~~v~p~---g~------~~~~vdir---vi-~ath~dl~~lv~~g~fre 469 (606)
T COG3284 417 GDMPLA--------------LQSRLLRVLQEGVVTPL---GG------TRIKVDIR---VI-AATHRDLAQLVEQGRFRE 469 (606)
T ss_pred hhchHH--------------HHHHHHHHHhhCceecc---CC------cceeEEEE---EE-eccCcCHHHHHHcCCchH
Confidence 999988 9999999997 444432 22 22567744 44 555679999998887766
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCH-HHHHHHHhchHHHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKNALGKQYRK 562 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~-eel~~Il~~~l~~L~kqy~~ 562 (684)
+++|+.+.. +|.++||.+ .|....+.+ +.++
T Consensus 470 dLyyrL~~~-----------------------------------------~i~lP~lr~R~d~~~~l~~----~~~~--- 501 (606)
T COG3284 470 DLYYRLNAF-----------------------------------------VITLPPLRERSDRIPLLDR----ILKR--- 501 (606)
T ss_pred HHHHHhcCe-----------------------------------------eeccCchhcccccHHHHHH----HHHH---
Confidence 666654432 455555554 111111211 1111
Q ss_pred HHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 563 MFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 563 ~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.....+.++++++..|.. |.|++|.|+|.++|+.+..
T Consensus 502 ---~~~~~~~l~~~~~~~l~~--~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 502 ---ENDWRLQLDDDALARLLA--YRWPGNIRELDNVIERLAA 538 (606)
T ss_pred ---ccCCCccCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHH
Confidence 112468899999999988 7888889999999999775
No 73
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-15 Score=163.13 Aligned_cols=225 Identities=20% Similarity=0.289 Sum_probs=154.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|-|.+.+|+.+.+.|..+.++.... ....+-.|+.+|||+||||||||.+|+++|++.+.+|
T Consensus 94 IggLe~v~~~L~e~VilPlr~pelF------------------~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f 155 (386)
T KOG0737|consen 94 IGGLEEVKDALQELVILPLRRPELF------------------AKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF 155 (386)
T ss_pred ccchHHHHHHHHHHHhhcccchhhh------------------cccccccCCccceecCCCCchHHHHHHHHHHHcCCCc
Confidence 6899999999999997555542211 1122334569999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++.++ .+|+|+. ++.+..+|.-+. .-+|+||||||||.+...|.+ +.++....+.+++...-||-.
T Consensus 156 Inv~~s~lt-~KWfgE~-eKlv~AvFslAs----Kl~P~iIFIDEvds~L~~R~s---~dHEa~a~mK~eFM~~WDGl~- 225 (386)
T KOG0737|consen 156 INVSVSNLT-SKWFGEA-QKLVKAVFSLAS----KLQPSIIFIDEVDSFLGQRRS---TDHEATAMMKNEFMALWDGLS- 225 (386)
T ss_pred ceeeccccc-hhhHHHH-HHHHHHHHhhhh----hcCcceeehhhHHHHHhhccc---chHHHHHHHHHHHHHHhcccc-
Confidence 999999999 5899998 788888887664 358999999999999988731 112222235566666666422
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCc-CHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFV-DIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~-dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
++... .++++.++|.. ||
T Consensus 226 --------s~~~~--------rVlVlgATNRP~Dl--------------------------------------------- 244 (386)
T KOG0737|consen 226 --------SKDSE--------RVLVLGATNRPFDL--------------------------------------------- 244 (386)
T ss_pred --------CCCCc--------eEEEEeCCCCCccH---------------------------------------------
Confidence 11111 13333333311 22
Q ss_pred HHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHH
Q 005663 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 li~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~ 597 (684)
...++.|++..+.+.-++.++..+|++.. ++...+.-.| -+..++. .+.++..+.|++
T Consensus 245 ------DeAiiRR~p~rf~V~lP~~~qR~kILkvi-----------Lk~e~~e~~v---D~~~iA~--~t~GySGSDLke 302 (386)
T KOG0737|consen 245 ------DEAIIRRLPRRFHVGLPDAEQRRKILKVI-----------LKKEKLEDDV---DLDEIAQ--MTEGYSGSDLKE 302 (386)
T ss_pred ------HHHHHHhCcceeeeCCCchhhHHHHHHHH-----------hcccccCccc---CHHHHHH--hcCCCcHHHHHH
Confidence 34566788888888778888888988752 1222222222 2456666 456777799999
Q ss_pred HHHHHHHHHHhcCCCCc
Q 005663 598 LLENILMDAMYEIPDVR 614 (684)
Q Consensus 598 iIe~~l~~al~e~~~~~ 614 (684)
+...+....+.++...+
T Consensus 303 lC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 303 LCRLAALRPIRELLVSE 319 (386)
T ss_pred HHHHHhHhHHHHHHHhc
Confidence 88888777777766553
No 74
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.64 E-value=1.3e-14 Score=155.89 Aligned_cols=203 Identities=24% Similarity=0.329 Sum_probs=137.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++||+++++.+...+.....+ ..++.++||+||||||||++|+++|+.++..+
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~---------------------------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR---------------------------GEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc---------------------------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 699999999998887421110 01237899999999999999999999999988
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
...++..+.. ...+..++... ..++||||||||.+... +++.|+..|++..+
T Consensus 80 ~~~~~~~~~~--------~~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~ 131 (328)
T PRK00080 80 RITSGPALEK--------PGDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRL 131 (328)
T ss_pred EEEecccccC--------hHHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcce
Confidence 7776654431 11222333221 35689999999999866 77888899985443
Q ss_pred eec-CCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 439 NVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 439 ~Vp-~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
.+- .++. ..+.+.+....+.+|++++..+
T Consensus 132 ~~~l~~~~----~~~~~~~~l~~~~li~at~~~~---------------------------------------------- 161 (328)
T PRK00080 132 DIMIGKGP----AARSIRLDLPPFTLIGATTRAG---------------------------------------------- 161 (328)
T ss_pred eeeeccCc----cccceeecCCCceEEeecCCcc----------------------------------------------
Confidence 221 1110 1111222333456666655211
Q ss_pred HHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHH
Q 005663 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 li~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.++|++|+..++.|.+++.+++.+|+...... ..+.++++++++|++++ .+..|-+.+
T Consensus 162 ----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------------~~~~~~~~~~~~ia~~~---~G~pR~a~~ 221 (328)
T PRK00080 162 ----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------------LGVEIDEEGALEIARRS---RGTPRIANR 221 (328)
T ss_pred ----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------------cCCCcCHHHHHHHHHHc---CCCchHHHH
Confidence 2457889999989999999999999999863221 16779999999999973 233588888
Q ss_pred HHHHHHHHH
Q 005663 598 LLENILMDA 606 (684)
Q Consensus 598 iIe~~l~~a 606 (684)
+++++..-+
T Consensus 222 ~l~~~~~~a 230 (328)
T PRK00080 222 LLRRVRDFA 230 (328)
T ss_pred HHHHHHHHH
Confidence 887755444
No 75
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2e-15 Score=154.61 Aligned_cols=213 Identities=23% Similarity=0.318 Sum_probs=147.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|-|+.+.++.+++.|..+......... .|. -||.+||||||||||||++|+++|+..+.-
T Consensus 178 dvggckeqieklrevve~pll~perfv~----lgi---------------dppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVN----LGI---------------DPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhh----cCC---------------CCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 3789999999999999754443221110 111 135899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+++-.+++. ..|+|++ ...++++|+.+.. .+-||||+||||.+...|-..+.++| .+||..+|+++.
T Consensus 239 firvigselv-qkyvgeg-armvrelf~mart----kkaciiffdeidaiggarfddg~ggd---nevqrtmleli~--- 306 (435)
T KOG0729|consen 239 FIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGD---NEVQRTMLELIN--- 306 (435)
T ss_pred EEeehhHHHH-HHHhhhh-HHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCc---HHHHHHHHHHHH---
Confidence 9999999999 5799998 7899999998865 45699999999999887765444443 459999988885
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
+-.-++.++ ||-+++++|..+
T Consensus 307 -----qldgfdprg--------nikvlmatnrpd---------------------------------------------- 327 (435)
T KOG0729|consen 307 -----QLDGFDPRG--------NIKVLMATNRPD---------------------------------------------- 327 (435)
T ss_pred -----hccCCCCCC--------CeEEEeecCCCC----------------------------------------------
Confidence 111123333 566777776432
Q ss_pred HHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHH-HHHHHHhcCCCCCChHH
Q 005663 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 li~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA-l~~La~~a~~~~~GAR~ 594 (684)
.+.|.|+ +|+|..|.|.-++.+-..+|++.... .+.++.+. .+.|+.. .+..+|| +
T Consensus 328 ----tldpallrpgrldrkvef~lpdlegrt~i~kihak---------------smsverdir~ellarl-cpnstga-e 386 (435)
T KOG0729|consen 328 ----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK---------------SMSVERDIRFELLARL-CPNSTGA-E 386 (435)
T ss_pred ----CcCHhhcCCcccccceeccCCcccccceeEEEecc---------------ccccccchhHHHHHhh-CCCCcch-H
Confidence 1234443 78888888887777777777765321 22333332 4556664 3445554 6
Q ss_pred HHHHHHH
Q 005663 595 LRSLLEN 601 (684)
Q Consensus 595 Lr~iIe~ 601 (684)
||++...
T Consensus 387 irsvcte 393 (435)
T KOG0729|consen 387 IRSVCTE 393 (435)
T ss_pred HHHHHHH
Confidence 7776544
No 76
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=1.4e-14 Score=153.21 Aligned_cols=201 Identities=22% Similarity=0.342 Sum_probs=131.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++||+++++.|...+...-.+ . ..+.+++|+||||||||++|+++|+.++.++
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~---------------~------------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMR---------------Q------------EALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhc---------------C------------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 699999999988877411000 0 0126899999999999999999999999887
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
...+++.+... ..+...+... ..+.+||||||+.+... .+..|+.+|++...
T Consensus 59 ~~~~~~~~~~~--------~~l~~~l~~~------~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~ 110 (305)
T TIGR00635 59 KITSGPALEKP--------GDLAAILTNL------EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRL 110 (305)
T ss_pred EEeccchhcCc--------hhHHHHHHhc------ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhhe
Confidence 77665543311 1122222211 24579999999999876 78889999985433
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.+.-..+ ...+........+++|.+++..
T Consensus 111 ~~v~~~~---~~~~~~~~~~~~~~li~~t~~~------------------------------------------------ 139 (305)
T TIGR00635 111 DIVIGKG---PSARSVRLDLPPFTLVGATTRA------------------------------------------------ 139 (305)
T ss_pred eeeeccC---ccccceeecCCCeEEEEecCCc------------------------------------------------
Confidence 2210000 0011112223334455444311
Q ss_pred HhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005663 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 i~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~i 598 (684)
..+.+++++|+..++.|.+++.+++.+|+...... . .+.++++++++|++.+ .+.+|.+.++
T Consensus 140 --~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-----------~--~~~~~~~al~~ia~~~---~G~pR~~~~l 201 (305)
T TIGR00635 140 --GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-----------L--NVEIEPEAALEIARRS---RGTPRIANRL 201 (305)
T ss_pred --cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-----------h--CCCcCHHHHHHHHHHh---CCCcchHHHH
Confidence 12457899999989999999999999999753221 1 5679999999999963 2234777777
Q ss_pred HHHHH
Q 005663 599 LENIL 603 (684)
Q Consensus 599 Ie~~l 603 (684)
++.+.
T Consensus 202 l~~~~ 206 (305)
T TIGR00635 202 LRRVR 206 (305)
T ss_pred HHHHH
Confidence 77654
No 77
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.63 E-value=2.8e-15 Score=183.70 Aligned_cols=189 Identities=17% Similarity=0.248 Sum_probs=128.7
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCC---c------cc--------------------------
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAG---Y------VG-------------------------- 373 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sg---y------vG-------------------------- 373 (684)
++.+|||+||||||||+|||++|..+++||+.++++++.+.. | +|
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~ 1708 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNAL 1708 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchh
Confidence 568999999999999999999999999999999999887321 0 12
Q ss_pred -----cchH-HHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCccc
Q 005663 374 -----EDVE-SILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARK 447 (684)
Q Consensus 374 -----~~~~-~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~ 447 (684)
.+++ ..++.+|+.|. +..||||||||||.+.... ..+.....||..|+|...
T Consensus 1709 ~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~--------- 1766 (2281)
T CHL00206 1709 TMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCE--------- 1766 (2281)
T ss_pred hhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccc---------
Confidence 1211 12566666654 3589999999999998651 112247889999984210
Q ss_pred CCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhh
Q 005663 448 HPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEF 527 (684)
Q Consensus 448 ~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeL 527 (684)
.-.++++++|+|+|..+ .+.|+|
T Consensus 1767 -------~~s~~~VIVIAATNRPD--------------------------------------------------~LDPAL 1789 (2281)
T CHL00206 1767 -------RCSTRNILVIASTHIPQ--------------------------------------------------KVDPAL 1789 (2281)
T ss_pred -------cCCCCCEEEEEeCCCcc--------------------------------------------------cCCHhH
Confidence 01345688888877432 245777
Q ss_pred h--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005663 528 V--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 528 l--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
+ +|||..|.+..++..+..+++... ....++.+.-+...++.+|+ .+.++.+++|.+++..++.-
T Consensus 1790 LRPGRFDR~I~Ir~Pd~p~R~kiL~IL-----------l~tkg~~L~~~~vdl~~LA~--~T~GfSGADLanLvNEAali 1856 (2281)
T CHL00206 1790 IAPNKLNTCIKIRRLLIPQQRKHFFTL-----------SYTRGFHLEKKMFHTNGFGS--ITMGSNARDLVALTNEALSI 1856 (2281)
T ss_pred cCCCCCCeEEEeCCCCchhHHHHHHHH-----------HhhcCCCCCcccccHHHHHH--hCCCCCHHHHHHHHHHHHHH
Confidence 7 599999999888876666655421 01112222211112566777 46777789999999988887
Q ss_pred HHhc
Q 005663 606 AMYE 609 (684)
Q Consensus 606 al~e 609 (684)
++.+
T Consensus 1857 Airq 1860 (2281)
T CHL00206 1857 SITQ 1860 (2281)
T ss_pred HHHc
Confidence 7665
No 78
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.62 E-value=1.6e-15 Score=148.57 Aligned_cols=150 Identities=25% Similarity=0.402 Sum_probs=103.7
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---~ 355 (684)
+||.+.+.+.+.+.+. .++.. +.+|||+|++||||+.+|++|.+.. +
T Consensus 1 liG~s~~m~~~~~~~~--------------~~a~~----------------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~ 50 (168)
T PF00158_consen 1 LIGESPAMKRLREQAK--------------RAASS----------------DLPVLITGETGTGKELLARAIHNNSPRKN 50 (168)
T ss_dssp SS--SHHHHHHHHHHH--------------HHTTS----------------TS-EEEECSTTSSHHHHHHHHHHCSTTTT
T ss_pred CEeCCHHHHHHHHHHH--------------HHhCC----------------CCCEEEEcCCCCcHHHHHHHHHHhhhccc
Confidence 5888999998888774 11111 2799999999999999999998866 5
Q ss_pred CCEEEEeccccccCCccccchHHHHHHHHhc-----------ccchHHhhcCCEEEEccccccchhhcccccCCCCchHH
Q 005663 356 VPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~-----------a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~ 424 (684)
.||+.+||+.+.+ +..-.++|.. ..+.++.+.+|+||||||+.|++.
T Consensus 51 ~pfi~vnc~~~~~--------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------- 108 (168)
T PF00158_consen 51 GPFISVNCAALPE--------ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------- 108 (168)
T ss_dssp S-EEEEETTTS-H--------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------
T ss_pred CCeEEEehhhhhc--------chhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHH--------------
Confidence 7999999998752 2223344432 236788999999999999999998
Q ss_pred HHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccc
Q 005663 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v 491 (684)
+|..|+++|+...+. ..+..+.+. .++.+|++++ .+|++.+.++.++.+++|+.++
T Consensus 109 ~Q~~Ll~~l~~~~~~-------~~g~~~~~~---~~~RiI~st~-~~l~~~v~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 109 LQAKLLRVLEEGKFT-------RLGSDKPVP---VDVRIIASTS-KDLEELVEQGRFREDLYYRLNV 164 (168)
T ss_dssp HHHHHHHHHHHSEEE-------CCTSSSEEE-----EEEEEEES-S-HHHHHHTTSS-HHHHHHHTT
T ss_pred HHHHHHHHHhhchhc-------ccccccccc---ccceEEeecC-cCHHHHHHcCCChHHHHHHhce
Confidence 999999999843332 011122222 3566776665 5899999999999988887554
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=8.6e-15 Score=163.44 Aligned_cols=185 Identities=24% Similarity=0.298 Sum_probs=128.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.|..++.... -++.+||+||+|||||++|+.+|+.++..
T Consensus 20 vVGQe~iv~~L~~~i~~~r-------------------------------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~ 68 (484)
T PRK14956 20 VIHQDLAIGALQNALKSGK-------------------------------IGHAYIFFGPRGVGKTTIARILAKRLNCEN 68 (484)
T ss_pred HhChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence 7999999999988875100 01458999999999999999999998652
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.+|+. .-.|. ..++++..............|+||||+|.|...
T Consensus 69 ~~~~~pCg~C~sC~~i~~g~~~dviEIdaa-----s~~gV---d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~---- 136 (484)
T PRK14956 69 PIGNEPCNECTSCLEITKGISSDVLEIDAA-----SNRGI---ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ---- 136 (484)
T ss_pred ccCccccCCCcHHHHHHccCCccceeechh-----hcccH---HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH----
Confidence 2222221 11122 223333332211111234569999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++..
T Consensus 137 ----------A~NALLKtLEE---------------------Pp~~viFILaTte~------------------------ 161 (484)
T PRK14956 137 ----------SFNALLKTLEE---------------------PPAHIVFILATTEF------------------------ 161 (484)
T ss_pred ----------HHHHHHHHhhc---------------------CCCceEEEeecCCh------------------------
Confidence 99999999982 12357888776521
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
..+.+.+++|.. .+.|.+++.+++.+.+...+ ... .+.++
T Consensus 162 --------------------------~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~-----------~~E--gi~~e 201 (484)
T PRK14956 162 --------------------------HKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLC-----------KIE--NVQYD 201 (484)
T ss_pred --------------------------hhccHHHHhhhh-eeeecCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 125577888886 68999999999888776521 112 46799
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++..|++.+ +++.|..-++++.++.
T Consensus 202 ~eAL~~Ia~~S---~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 202 QEGLFWIAKKG---DGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHc---CChHHHHHHHHHHHHH
Confidence 99999999963 5668999999988663
No 80
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.61 E-value=5.4e-15 Score=163.68 Aligned_cols=249 Identities=15% Similarity=0.241 Sum_probs=154.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.+++++|++||||+++|+++.... +.||+.+||+.+.+ ...+|...+. +........+.+..+.+|+|||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGA-FTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCC-cCCCCcCCCCceeECCCCEEEEec
Confidence 689999999999999999997665 57899999997752 1112221110 000001112445677899999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
|+.|+.. +|..|++.++...+. ..+....+.+ ++.+|++++. ++...+..
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~-------~~~~~~~~~~---~~rii~~t~~-~~~~~~~~----- 291 (441)
T PRK10365 242 IGDISPM--------------MQVRLLRAIQEREVQ-------RVGSNQTISV---DVRLIAATHR-DLAAEVNA----- 291 (441)
T ss_pred cccCCHH--------------HHHHHHHHHccCcEE-------eCCCCceeee---ceEEEEeCCC-CHHHHHHc-----
Confidence 9999998 999999999843322 1111222222 3556666542 44333332
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
..|.++|+.|+.. .|.++||.+ +|+..++..++..+.+++
T Consensus 292 -------------------------------------~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~ 334 (441)
T PRK10365 292 -------------------------------------GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERN 334 (441)
T ss_pred -------------------------------------CCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHh
Confidence 2477888888865 577888887 688888877554443221
Q ss_pred HHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCcccCCCcce
Q 005663 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAK 640 (684)
Q Consensus 561 ~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~~~~~~~ 640 (684)
. .....+++++++.|.. |+|++|+|+|+++|++++..+-. -.|+.+.+..........
T Consensus 335 ----~--~~~~~~~~~a~~~L~~--~~wpgN~reL~~~~~~~~~~~~~--------------~~i~~~~l~~~~~~~~~~ 392 (441)
T PRK10365 335 ----R--KAVKGFTPQAMDLLIH--YDWPGNIRELENAVERAVVLLTG--------------EYISERELPLAIASTPIP 392 (441)
T ss_pred ----C--CCCCCcCHHHHHHHHh--CCCCCHHHHHHHHHHHHHHhCCC--------------CccchHhCchhhcccccC
Confidence 1 1134599999999999 67888899999999998764211 012222221100000000
Q ss_pred EEcCCChHHHHHHHhhhhhhhhccccCCCCC
Q 005663 641 ILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 641 i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
......+. -+++.|+..|++.+..++|+.
T Consensus 393 -~~~~~~~~-~l~~~e~~~i~~~l~~~~gn~ 421 (441)
T PRK10365 393 -LGQSQDIQ-PLVEVEKEVILAALEKTGGNK 421 (441)
T ss_pred -cccccchh-hHHHHHHHHHHHHHHHhCCCH
Confidence 00111232 367889999999998888874
No 81
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.1e-15 Score=158.31 Aligned_cols=179 Identities=24% Similarity=0.366 Sum_probs=133.5
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.|-|.+..++.+.+++..+.-. .+.... -.||.+|+|||+||||||+||+|+|+...
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemG---------------------ikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMG---------------------IKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcC---------------------CCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 3789999999999999733221 111111 12458999999999999999999999999
Q ss_pred CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhc
Q 005663 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..|+++-.+++. ..|.|++ .+.++++|+.+.. ..++|+||||||.+..+|-+.+.++. +++|..+|++|.
T Consensus 245 ATFlRvvGseLi-QkylGdG-pklvRqlF~vA~e----~apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELLN- 314 (440)
T KOG0726|consen 245 ATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----HAPSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELLN- 314 (440)
T ss_pred hhhhhhhhHHHH-HHHhccc-hHHHHHHHHHHHh----cCCceEEeehhhhhccccccCCCccH---HHHHHHHHHHHH-
Confidence 999999999998 5799998 6899999998764 58899999999999998765443322 358998888886
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKS 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
+-.-++.+++ +-+||++|..+
T Consensus 315 -------QldGFdsrgD--------vKvimATnrie-------------------------------------------- 335 (440)
T KOG0726|consen 315 -------QLDGFDSRGD--------VKVIMATNRIE-------------------------------------------- 335 (440)
T ss_pred -------hccCccccCC--------eEEEEeccccc--------------------------------------------
Confidence 1111233333 56677766321
Q ss_pred hhHHhcCCChhhh--cccceEEEecccCHHHHHHHHhch
Q 005663 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 516 ~dli~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~ 552 (684)
.+.|.|+ +|||..|.|+-+++....+|+...
T Consensus 336 ------~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 336 ------TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred ------ccCHhhcCCCccccccccCCCchhhhceeEEEe
Confidence 2345555 799999999999998888887754
No 82
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.60 E-value=1.9e-14 Score=159.51 Aligned_cols=166 Identities=28% Similarity=0.418 Sum_probs=117.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.+++|+||||||||++|+++|+.++.+|+.+++.... ...++.++...........+.||||||||.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 6899999999999999999999999999999886432 1223333333211111235689999999999877
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcc
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~ 490 (684)
.|+.|+..||+. .+++|.+++...
T Consensus 108 --------------~q~~LL~~le~~-----------------------~iilI~att~n~------------------- 131 (413)
T PRK13342 108 --------------QQDALLPHVEDG-----------------------TITLIGATTENP------------------- 131 (413)
T ss_pred --------------HHHHHHHHhhcC-----------------------cEEEEEeCCCCh-------------------
Confidence 899999999821 133444332100
Q ss_pred cccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCce
Q 005663 491 VRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~ 570 (684)
...+.+.+++|+ .++.|.+++.+++..++...+... . .++
T Consensus 132 -----------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~----~-----~~~- 171 (413)
T PRK13342 132 -----------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDK----E-----RGL- 171 (413)
T ss_pred -----------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHh----h-----cCC-
Confidence 012458889999 578999999999999887633221 1 122
Q ss_pred eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+.+++++++.|++.+ ++++|.+.++++.++.
T Consensus 172 i~i~~~al~~l~~~s---~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 172 VELDDEALDALARLA---NGDARRALNLLELAAL 202 (413)
T ss_pred CCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 479999999999963 5678999999998754
No 83
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.59 E-value=3.2e-14 Score=165.75 Aligned_cols=227 Identities=22% Similarity=0.263 Sum_probs=154.9
Q ss_pred HHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005663 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 270 ~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAka 349 (684)
.+...+++ +.|.+.+++.+.+.+.. .+...... .. ... .+.++||+||||||||++|++
T Consensus 146 ~~~~~~~d-i~g~~~~~~~l~~i~~~-~~~~~~~~----~~--------------~~~-~~~gill~G~~G~GKt~~~~~ 204 (644)
T PRK10733 146 QIKTTFAD-VAGCDEAKEEVAELVEY-LREPSRFQ----KL--------------GGK-IPKGVLMVGPPGTGKTLLAKA 204 (644)
T ss_pred hhhCcHHH-HcCHHHHHHHHHHHHHH-hhCHHHHH----hc--------------CCC-CCCcEEEECCCCCCHHHHHHH
Confidence 34444444 68999999999987752 11100000 00 001 136799999999999999999
Q ss_pred HHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHH
Q 005663 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 350 LA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+++.++.||+.++++++. ..++|.. ...++.+|..+. ...++||||||||.+...++....+.+...+.+.+.|
T Consensus 205 ~a~~~~~~f~~is~~~~~-~~~~g~~-~~~~~~~f~~a~----~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~l 278 (644)
T PRK10733 205 IAGEAKVPFFTISGSDFV-EMFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 278 (644)
T ss_pred HHHHcCCCEEEEehHHhH-Hhhhccc-HHHHHHHHHHHH----hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHH
Confidence 999999999999999887 4577776 566777776543 3478999999999999877654444455566788999
Q ss_pred HHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhh
Q 005663 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~l 509 (684)
|..|||.. ....+++|+|+|..+
T Consensus 279 L~~mdg~~-------------------~~~~vivIaaTN~p~-------------------------------------- 301 (644)
T PRK10733 279 LVEMDGFE-------------------GNEGIIVIAATNRPD-------------------------------------- 301 (644)
T ss_pred HHhhhccc-------------------CCCCeeEEEecCChh--------------------------------------
Confidence 99998521 123477888877432
Q ss_pred hhhccchhHHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCC
Q 005663 510 METVKSSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 510 l~~v~~~dli~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~ 587 (684)
.+.|.++ +|||..+.++.++.++..+|++..+..+ .....++ +..+++ ..
T Consensus 302 ------------~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~-----------~l~~~~d---~~~la~--~t 353 (644)
T PRK10733 302 ------------VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-----------PLAPDID---AAIIAR--GT 353 (644)
T ss_pred ------------hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC-----------CCCCcCC---HHHHHh--hC
Confidence 1335555 5999999999999999999987532111 1111122 344565 35
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q 005663 588 KNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.++..++|.+++..+...+..
T Consensus 354 ~G~sgadl~~l~~eAa~~a~r 374 (644)
T PRK10733 354 PGFSGADLANLVNEAALFAAR 374 (644)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 566678888888887776654
No 84
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.3e-15 Score=151.22 Aligned_cols=176 Identities=23% Similarity=0.361 Sum_probs=130.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|-|.++.++.|.+++..+..+..... ..+ + .||.++|+|||||||||++|++.|...+..|
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~----~lg--------------i-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMTHKEKFE----NLG--------------I-RPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred cccHHHHHHHHHHHhccccccHHHHH----hcC--------------C-CCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 78999999999999974433211110 000 0 2358999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh---c
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE---G 435 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE---g 435 (684)
+.+-...+.+ -|+|.+ .+.++..|..+.. ..++||||||+|.+..+|-.+. -...++||..+|++|. |
T Consensus 234 LKLAgPQLVQ-MfIGdG-AkLVRDAFaLAKE----kaP~IIFIDElDAIGtKRfDSe---k~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 234 LKLAGPQLVQ-MFIGDG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSE---KAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred HHhcchHHHh-hhhcch-HHHHHHHHHHhhc----cCCeEEEEechhhhcccccccc---ccccHHHHHHHHHHHHhhcC
Confidence 9999998884 599988 7889998877653 5789999999999998875432 2233468888888875 2
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKS 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.. ....+-+|.++|..|
T Consensus 305 Fs-------------------s~~~vKviAATNRvD-------------------------------------------- 321 (424)
T KOG0652|consen 305 FS-------------------SDDRVKVIAATNRVD-------------------------------------------- 321 (424)
T ss_pred CC-------------------CccceEEEeeccccc--------------------------------------------
Confidence 21 122355566666433
Q ss_pred hhHHhcCCChhhh--cccceEEEecccCHHHHHHHHhc
Q 005663 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 516 ~dli~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
-+.|.|+ +|+|..|.|+-++++...+|++.
T Consensus 322 ------iLDPALlRSGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 322 ------ILDPALLRSGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred ------ccCHHHhhcccccccccCCCCChHHHHHHHHH
Confidence 1335554 79999999999999999998875
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.7e-14 Score=160.56 Aligned_cols=185 Identities=26% Similarity=0.435 Sum_probs=126.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
|+||+++++.|..++..+. .++.+||+||||||||++|+++|+.++.
T Consensus 16 ivGq~~i~~~L~~~i~~~~-------------------------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~ 64 (472)
T PRK14962 16 VVGQDHVKKLIINALKKNS-------------------------------ISHAYIFAGPRGTGKTTVARILAKSLNCEN 64 (472)
T ss_pred ccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 7999999998888774110 1256899999999999999999998864
Q ss_pred ----------------------CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
.++.++++. ..|. ..++.+..........+...||||||+|.+...
T Consensus 65 ~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-----~~gi---d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~---- 132 (472)
T PRK14962 65 RKGVEPCNECRACRSIDEGTFMDVIELDAAS-----NRGI---DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE---- 132 (472)
T ss_pred CCCCCCCcccHHHHHHhcCCCCccEEEeCcc-----cCCH---HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH----
Confidence 244444431 1222 223333332221112245679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.++.||+.||. ...+++||++++. .+
T Consensus 133 ----------a~~~LLk~LE~---------------------p~~~vv~Ilattn--~~--------------------- 158 (472)
T PRK14962 133 ----------AFNALLKTLEE---------------------PPSHVVFVLATTN--LE--------------------- 158 (472)
T ss_pred ----------HHHHHHHHHHh---------------------CCCcEEEEEEeCC--hH---------------------
Confidence 89999999982 1123556655431 00
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+.+|+. ++.|.+++.+++..++...+ ... .+.++
T Consensus 159 ---------------------------kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~-----------~~e--gi~i~ 197 (472)
T PRK14962 159 ---------------------------KVPPTIISRCQ-VIEFRNISDELIIKRLQEVA-----------EAE--GIEID 197 (472)
T ss_pred ---------------------------hhhHHHhcCcE-EEEECCccHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 13467778885 79999999999888876522 112 46799
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ ++++|.+-+.++.++.
T Consensus 198 ~eal~~Ia~~s---~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 198 REALSFIAKRA---SGGLRDALTMLEQVWK 224 (472)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 99999999963 4678988888887553
No 86
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3e-14 Score=164.82 Aligned_cols=185 Identities=26% Similarity=0.334 Sum_probs=127.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
||||+++++.|...+.... .++.+||+||+|||||++|++||+.++..
T Consensus 18 VIGQe~Vv~~L~~aL~~gR-------------------------------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~ 66 (830)
T PRK07003 18 LVGQEHVVRALTHALDGGR-------------------------------LHHAYLFTGTRGVGKTTLSRIFAKALNCET 66 (830)
T ss_pred HcCcHHHHHHHHHHHhcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 7999999999998874100 02567999999999999999999998642
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.+|..+ -.|. ..++++++...+........|+||||+|.|...
T Consensus 67 ~~~~~PCG~C~sCr~I~~G~h~DviEIDAas-----~rgV---DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~---- 134 (830)
T PRK07003 67 GVTSQPCGVCRACREIDEGRFVDYVEMDAAS-----NRGV---DEMAALLERAVYAPVDARFKVYMIDEVHMLTNH---- 134 (830)
T ss_pred CCCCCCCcccHHHHHHhcCCCceEEEecccc-----cccH---HHHHHHHHHHHhccccCCceEEEEeChhhCCHH----
Confidence 22332221 1121 224444443222222345679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.++.||+.||+ ...+++||++++..
T Consensus 135 ----------A~NALLKtLEE---------------------PP~~v~FILaTtd~------------------------ 159 (830)
T PRK07003 135 ----------AFNAMLKTLEE---------------------PPPHVKFILATTDP------------------------ 159 (830)
T ss_pred ----------HHHHHHHHHHh---------------------cCCCeEEEEEECCh------------------------
Confidence 89999999992 12357777776621
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
..+.+.+++|+. .+.|.+++.+++.+++...+ +.+ .+.++
T Consensus 160 --------------------------~KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il-----------~~E--gI~id 199 (830)
T PRK07003 160 --------------------------QKIPVTVLSRCL-QFNLKQMPAGHIVSHLERIL-----------GEE--RIAFE 199 (830)
T ss_pred --------------------------hhccchhhhheE-EEecCCcCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 124577888885 79999999999988886521 112 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ .++.|...++++..+.
T Consensus 200 ~eAL~lIA~~A---~GsmRdALsLLdQAia 226 (830)
T PRK07003 200 PQALRLLARAA---QGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999963 4456888787776553
No 87
>PLN03025 replication factor C subunit; Provisional
Probab=99.57 E-value=3.3e-14 Score=152.36 Aligned_cols=181 Identities=23% Similarity=0.307 Sum_probs=119.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
++||+++++.|...+... ...++||+||||||||++|+++|+.+..
T Consensus 15 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDG--------------------------------NMPNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 689999999888766310 0157999999999999999999998732
Q ss_pred ---CEEEEeccccccCCccccchHHHHHHHHh---cccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 357 ---PFVIADATTLTQAGYVGEDVESILYKLLT---VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 357 ---pfv~v~~s~l~~sgyvG~~~~~~l~~l~~---~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
.++.+++++. .|.+ .+++.+. ............||+|||+|.+... .|++|+
T Consensus 63 ~~~~~~eln~sd~-----~~~~---~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~ 120 (319)
T PLN03025 63 YKEAVLELNASDD-----RGID---VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALR 120 (319)
T ss_pred Cccceeeeccccc-----ccHH---HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHH
Confidence 3555555432 2222 2222221 1111111124579999999999877 899999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
+.||.. ..++.||+++|...
T Consensus 121 ~~lE~~---------------------~~~t~~il~~n~~~--------------------------------------- 140 (319)
T PLN03025 121 RTMEIY---------------------SNTTRFALACNTSS--------------------------------------- 140 (319)
T ss_pred HHHhcc---------------------cCCceEEEEeCCcc---------------------------------------
Confidence 999820 11123444443110
Q ss_pred hhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~ 590 (684)
.+.+++.+|.. ++.|.+++.+++...+... ++.. .+.++++++++|++.+ ++
T Consensus 141 -----------~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i-----------~~~e--gi~i~~~~l~~i~~~~---~g 192 (319)
T PLN03025 141 -----------KIIEPIQSRCA-IVRFSRLSDQEILGRLMKV-----------VEAE--KVPYVPEGLEAIIFTA---DG 192 (319)
T ss_pred -----------ccchhHHHhhh-cccCCCCCHHHHHHHHHHH-----------HHHc--CCCCCHHHHHHHHHHc---CC
Confidence 24577888875 7899999999998877652 1222 5678999999999963 45
Q ss_pred ChHHHHHHHHH
Q 005663 591 GARGLRSLLEN 601 (684)
Q Consensus 591 GAR~Lr~iIe~ 601 (684)
+.|.+-+.+|.
T Consensus 193 DlR~aln~Lq~ 203 (319)
T PLN03025 193 DMRQALNNLQA 203 (319)
T ss_pred CHHHHHHHHHH
Confidence 56777777773
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.56 E-value=5e-14 Score=165.30 Aligned_cols=170 Identities=25% Similarity=0.321 Sum_probs=117.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHH-hhcCCEEEEccccccch
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA-AAQQGIVYIDEVDKITK 409 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~-~a~~gVLfIDEIdkl~~ 409 (684)
.+++|+||||||||++|+++|+.++.+|+.+++.... . ..+++.+......+. .....+|||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------V---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------h---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 6899999999999999999999999999988886321 1 111222211100011 12457999999999987
Q ss_pred hhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCc
Q 005663 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~ 489 (684)
. .|+.|+..+|.. .+++|++++....
T Consensus 124 ~--------------qQdaLL~~lE~g-----------------------~IiLI~aTTenp~----------------- 149 (725)
T PRK13341 124 A--------------QQDALLPWVENG-----------------------TITLIGATTENPY----------------- 149 (725)
T ss_pred H--------------HHHHHHHHhcCc-----------------------eEEEEEecCCChH-----------------
Confidence 7 899999999821 1445554431100
Q ss_pred ccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCc
Q 005663 490 PVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 490 ~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv 569 (684)
..+.+.+++|.. ++.|++++.+++..|+...+....+. +.. .
T Consensus 150 -------------------------------~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~----~g~--~ 191 (725)
T PRK13341 150 -------------------------------FEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERG----YGD--R 191 (725)
T ss_pred -------------------------------hhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhh----cCC--c
Confidence 023467777854 78999999999999998754432221 111 2
Q ss_pred eeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 570 ~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.+.++++++++|++.+ ++++|.+.++++.++.
T Consensus 192 ~v~I~deaL~~La~~s---~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA---NGDARSLLNALELAVE 223 (725)
T ss_pred ccCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 5779999999999964 6779999999998774
No 89
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6e-14 Score=160.84 Aligned_cols=185 Identities=23% Similarity=0.294 Sum_probs=128.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
|+||+.+++.|..++.+. ..+..+||+||+|||||++|+++|+.++.
T Consensus 17 VIGQe~vv~~L~~aI~~g-------------------------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~ 65 (702)
T PRK14960 17 LVGQNHVSRALSSALERG-------------------------------RLHHAYLFTGTRGVGKTTIARILAKCLNCET 65 (702)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 799999999999888510 01267899999999999999999999864
Q ss_pred ----------------------CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
.++.+|+++ ..+ -..+++++....+........|++|||+|.|...
T Consensus 66 ~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-----~~~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~---- 133 (702)
T PRK14960 66 GVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-----RTK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH---- 133 (702)
T ss_pred CCCCCCCccCHHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH----
Confidence 233333321 112 2334555544333222345679999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...++.||++++.. .
T Consensus 134 ----------A~NALLKtLEE---------------------PP~~v~FILaTtd~--~--------------------- 159 (702)
T PRK14960 134 ----------SFNALLKTLEE---------------------PPEHVKFLFATTDP--Q--------------------- 159 (702)
T ss_pred ----------HHHHHHHHHhc---------------------CCCCcEEEEEECCh--H---------------------
Confidence 89999999982 11235566655410 0
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+++|.. ++.|.+++.+++.+.+...+ ... .+.++
T Consensus 160 ---------------------------kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il-----------~kE--gI~id 198 (702)
T PRK14960 160 ---------------------------KLPITVISRCL-QFTLRPLAVDEITKHLGAIL-----------EKE--QIAAD 198 (702)
T ss_pred ---------------------------hhhHHHHHhhh-eeeccCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 13356677775 79999999999988776522 122 56799
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++..|++.+ +++.|.+.++++.++.
T Consensus 199 ~eAL~~IA~~S---~GdLRdALnLLDQaIa 225 (702)
T PRK14960 199 QDAIWQIAESA---QGSLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999964 4567888888877663
No 90
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.8e-15 Score=161.77 Aligned_cols=219 Identities=26% Similarity=0.326 Sum_probs=152.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-CEEEEeccccccCCccccchHHHHHHHHhcccchHHhh----cCCEEEEcccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA----QQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~-pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a----~~gVLfIDEId 405 (684)
.++|||||||||||++||.|.+.++. +--.+|..++. .+|+|++ +..++++|..+....... .=.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 78999999999999999999999964 34568888888 7899999 788999998775322211 12489999999
Q ss_pred ccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCC
Q 005663 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~l 485 (684)
.+++.|++..++..+.+. |.++||.-|||.. ...||++|-.+|..||-+.
T Consensus 335 AICKqRGS~~g~TGVhD~-VVNQLLsKmDGVe-------------------qLNNILVIGMTNR~DlIDE---------- 384 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDT-VVNQLLSKMDGVE-------------------QLNNILVIGMTNRKDLIDE---------- 384 (744)
T ss_pred HHHHhcCCCCCCCCccHH-HHHHHHHhcccHH-------------------hhhcEEEEeccCchhhHHH----------
Confidence 999999988776666554 9999999999632 3457888887775543110
Q ss_pred CcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 486 GFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 Gf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
. -++| +|+.+.+.+.-+++.-..+|++..-.++ .
T Consensus 385 ----------------------A-------------LLRP---GRlEVqmEIsLPDE~gRlQIl~IHT~rM--------r 418 (744)
T KOG0741|consen 385 ----------------------A-------------LLRP---GRLEVQMEISLPDEKGRLQILKIHTKRM--------R 418 (744)
T ss_pred ----------------------H-------------hcCC---CceEEEEEEeCCCccCceEEEEhhhhhh--------h
Confidence 0 1234 7888888888788887788877542222 2
Q ss_pred hCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCc----CCCCcccEEEechhccC
Q 005663 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVR----AGDEVIDAVVVDEEAVG 631 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~----~g~~~i~~v~vdee~v~ 631 (684)
.+ ..-=++--++.||. .++|+..-+|+.+|..+-.-||.+..... ...+.++.+-|+.+.+.
T Consensus 419 e~--~~l~~dVdl~elA~--lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl 484 (744)
T KOG0741|consen 419 EN--NKLSADVDLKELAA--LTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFL 484 (744)
T ss_pred hc--CCCCCCcCHHHHHH--HhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHH
Confidence 21 11112223566776 46778778999999999888888765432 11223445555555443
No 91
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.1e-14 Score=163.81 Aligned_cols=189 Identities=25% Similarity=0.315 Sum_probs=124.8
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
||||+.+++.|..++... + -++.+||+||||||||++|+++|+.++..-
T Consensus 18 IIGQe~Iv~~LknaI~~~--r-----------------------------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~ 66 (944)
T PRK14949 18 MVGQSHVLHALTNALTQQ--R-----------------------------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQ 66 (944)
T ss_pred hcCcHHHHHHHHHHHHhC--C-----------------------------CCeEEEEECCCCCCHHHHHHHHHHhccCcc
Confidence 799999999998887411 0 024569999999999999999999996531
Q ss_pred E-------EE-eccc-----------cccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCC
Q 005663 359 V-------IA-DATT-----------LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 359 v-------~v-~~s~-----------l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d 419 (684)
. .+ .|-. +......|- ..++++..............|+||||+|+|...
T Consensus 67 ~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kV---DdIReLie~v~~~P~~gk~KViIIDEAh~LT~e--------- 134 (944)
T PRK14949 67 GVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKV---DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS--------- 134 (944)
T ss_pred CCCCCCCCCchHHHHHhcCCCceEEEeccccccCH---HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH---------
Confidence 0 00 0000 110111221 223444433222222345679999999999887
Q ss_pred CchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCC
Q 005663 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~ 499 (684)
.+++||+.||. ...+++||++++...
T Consensus 135 -----AqNALLKtLEE---------------------PP~~vrFILaTTe~~---------------------------- 160 (944)
T PRK14949 135 -----SFNALLKTLEE---------------------PPEHVKFLLATTDPQ---------------------------- 160 (944)
T ss_pred -----HHHHHHHHHhc---------------------cCCCeEEEEECCCch----------------------------
Confidence 99999999992 122356666544110
Q ss_pred CchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHH
Q 005663 500 VTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALR 579 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~ 579 (684)
.+.+.+++|+- ++.|.+++.+++.+.+.+.+. .. .+.+++++++
T Consensus 161 ----------------------kLl~TIlSRCq-~f~fkpLs~eEI~~~L~~il~-----------~E--gI~~edeAL~ 204 (944)
T PRK14949 161 ----------------------KLPVTVLSRCL-QFNLKSLTQDEIGTQLNHILT-----------QE--QLPFEAEALT 204 (944)
T ss_pred ----------------------hchHHHHHhhe-EEeCCCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHH
Confidence 23466777874 799999999999988865221 11 5679999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHH
Q 005663 580 LIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 580 ~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
.|++.+ ++..|..-++++..+
T Consensus 205 lIA~~S---~Gd~R~ALnLLdQal 225 (944)
T PRK14949 205 LLAKAA---NGSMRDALSLTDQAI 225 (944)
T ss_pred HHHHHc---CCCHHHHHHHHHHHH
Confidence 999963 555788888887655
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=4.7e-14 Score=161.43 Aligned_cols=185 Identities=26% Similarity=0.333 Sum_probs=125.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~- 356 (684)
.||||+++++.|..++.+.. -++.+||+||+|||||++|+.||+.++.
T Consensus 17 dVIGQe~vv~~L~~al~~gR-------------------------------LpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR-------------------------------LHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC-------------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999998885110 1256799999999999999999999965
Q ss_pred ----------------------------CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccc
Q 005663 357 ----------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 357 ----------------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~ 408 (684)
.++.+|.. .-.|. ..++++++...+........|+||||+|+|.
T Consensus 66 ~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa-----s~~gV---DdIReLie~~~~~P~~gr~KViIIDEah~Ls 137 (700)
T PRK12323 66 GADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA-----SNRGV---DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT 137 (700)
T ss_pred CccccccCCCCCCcccHHHHHHHcCCCCcceEeccc-----ccCCH---HHHHHHHHHHHhchhcCCceEEEEEChHhcC
Confidence 12222221 11122 2344444332222223456799999999998
Q ss_pred hhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcC
Q 005663 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~ 488 (684)
.. .+++||+.||+ ...+++||++++..+
T Consensus 138 ~~--------------AaNALLKTLEE---------------------PP~~v~FILaTtep~----------------- 165 (700)
T PRK12323 138 NH--------------AFNAMLKTLEE---------------------PPEHVKFILATTDPQ----------------- 165 (700)
T ss_pred HH--------------HHHHHHHhhcc---------------------CCCCceEEEEeCChH-----------------
Confidence 87 89999999993 123467777665211
Q ss_pred cccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCC
Q 005663 489 APVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNG 568 (684)
Q Consensus 489 ~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~g 568 (684)
.+.+.+++|+. .+.|.+++.+++.+.+...+ ...
T Consensus 166 ---------------------------------kLlpTIrSRCq-~f~f~~ls~eei~~~L~~Il-----------~~E- 199 (700)
T PRK12323 166 ---------------------------------KIPVTVLSRCL-QFNLKQMPPGHIVSHLDAIL-----------GEE- 199 (700)
T ss_pred ---------------------------------hhhhHHHHHHH-hcccCCCChHHHHHHHHHHH-----------HHc-
Confidence 23466777774 78999999999888776522 112
Q ss_pred ceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 569 VKLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 569 v~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
.+.+++++++.|++.+ ++..|...++++..+
T Consensus 200 -gi~~d~eAL~~IA~~A---~Gs~RdALsLLdQai 230 (700)
T PRK12323 200 -GIAHEVNALRLLAQAA---QGSMRDALSLTDQAI 230 (700)
T ss_pred -CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 4668999999999863 455677777776644
No 93
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.4e-14 Score=151.30 Aligned_cols=128 Identities=24% Similarity=0.351 Sum_probs=100.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|-|.-...+.+.+.+..|....+-..+ . ++ .+|..++||||||||||++|+++|..++..|
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~r----v--------------gI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLR----V--------------GI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccc----c--------------CC-CCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 678888888888888655553221110 0 11 2358999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+.++++. .+|.|+. ...+++.|..+.. ..+||||+||||.+...+.+ ...+..+.+|..|..+++
T Consensus 195 l~v~ss~lv-~kyiGEs-aRlIRemf~yA~~----~~pciifmdeiDAigGRr~s---e~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 195 LKVVSSALV-DKYIGES-ARLIRDMFRYARE----VIPCIIFMDEIDAIGGRRFS---EGTSSDREIQRTLMELLN 261 (388)
T ss_pred EEeeHhhhh-hhhcccH-HHHHHHHHHHHhh----hCceEEeehhhhhhccEEec---cccchhHHHHHHHHHHHH
Confidence 999999998 7899998 8999999988764 46799999999999887644 334445668888888887
No 94
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.55 E-value=1.9e-14 Score=131.86 Aligned_cols=93 Identities=33% Similarity=0.622 Sum_probs=74.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhh-cCCEEEEccccccchhh
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA-QQGIVYIDEVDKITKKA 411 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a-~~gVLfIDEIdkl~~~r 411 (684)
+||+||||||||++|+.+|+.++.+++.+++.++. ..+.+.. .+.+...+..+.. . .++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~-~~~i~~~~~~~~~----~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDS-EQKIRDFFKKAKK----SAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHH-HHHHHHHHHHHHH----TSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccc-ccccccccccccc----cccceeeeeccchhccccc
Confidence 68999999999999999999999999999999987 4566665 6677777766422 2 37999999999999874
Q ss_pred cccccCCCCchHHHHHHHHHHHh
Q 005663 412 ESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+...+...+.+++.|+..|+
T Consensus 75 ---~~~~~~~~~~~~~~L~~~l~ 94 (132)
T PF00004_consen 75 ---QPSSSSFEQRLLNQLLSLLD 94 (132)
T ss_dssp ---STSSSHHHHHHHHHHHHHHH
T ss_pred ---ccccccccccccceeeeccc
Confidence 22334445568999999998
No 95
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=6.3e-14 Score=159.05 Aligned_cols=185 Identities=28% Similarity=0.341 Sum_probs=126.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.|..++.... -+..+||+||+|||||++|+++|+.++..
T Consensus 18 ivGq~~v~~~L~~~~~~~~-------------------------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 66 (509)
T PRK14958 18 VIGQAPVVRALSNALDQQY-------------------------------LHHAYLFTGTRGVGKTTISRILAKCLNCEK 66 (509)
T ss_pred hcCCHHHHHHHHHHHHhCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 7999999999998885110 12568999999999999999999999642
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.+|+++ ..|. ..+++++....+....+...|++|||+|+|...
T Consensus 67 ~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-----~~~v---~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~---- 134 (509)
T PRK14958 67 GVSANPCNDCENCREIDEGRFPDLFEVDAAS-----RTKV---EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH---- 134 (509)
T ss_pred CCCcccCCCCHHHHHHhcCCCceEEEEcccc-----cCCH---HHHHHHHHHHhhccccCCcEEEEEEChHhcCHH----
Confidence 34444321 2222 224454443322222345679999999999987
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++ +..
T Consensus 135 ----------a~naLLk~LEe---------------------pp~~~~fIlatt--d~~--------------------- 160 (509)
T PRK14958 135 ----------SFNALLKTLEE---------------------PPSHVKFILATT--DHH--------------------- 160 (509)
T ss_pred ----------HHHHHHHHHhc---------------------cCCCeEEEEEEC--ChH---------------------
Confidence 89999999992 123356666544 110
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+++|.. ++.|.+++.+++.+.+... ++.. .+.++
T Consensus 161 ---------------------------kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~i-----------l~~e--gi~~~ 199 (509)
T PRK14958 161 ---------------------------KLPVTVLSRCL-QFHLAQLPPLQIAAHCQHL-----------LKEE--NVEFE 199 (509)
T ss_pred ---------------------------hchHHHHHHhh-hhhcCCCCHHHHHHHHHHH-----------HHHc--CCCCC
Confidence 13355677774 6889999999988776542 2222 46689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ +++.|.+.+++++++.
T Consensus 200 ~~al~~ia~~s---~GslR~al~lLdq~ia 226 (509)
T PRK14958 200 NAALDLLARAA---NGSVRDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHc---CCcHHHHHHHHHHHHh
Confidence 99999999964 4567988888887653
No 96
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.5e-14 Score=155.80 Aligned_cols=223 Identities=24% Similarity=0.292 Sum_probs=161.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.+.|++.+|+.+.+++..+..|.... .+..-+...+||.||||+|||.|++++|.+++..
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~d~F--------------------~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRPDLF--------------------LGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccchHhh--------------------hccccccchhheecCCCCchHHHHHHHHhhhcce
Confidence 47899999999999997555542221 1222345899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++.++ +.|+|+. +..++.+|..|.. .+++|+||||||++..+|. ...+...++.+..+|-.+++..
T Consensus 214 ff~iSassLt-sK~~Ge~-eK~vralf~vAr~----~qPsvifidEidslls~Rs---~~e~e~srr~ktefLiq~~~~~ 284 (428)
T KOG0740|consen 214 FFNISASSLT-SKYVGES-EKLVRALFKVARS----LQPSVIFIDEIDSLLSKRS---DNEHESSRRLKTEFLLQFDGKN 284 (428)
T ss_pred EeeccHHHhh-hhccChH-HHHHHHHHHHHHh----cCCeEEEechhHHHHhhcC---CcccccchhhhhHHHhhhcccc
Confidence 9999999999 8899999 8999999988764 6899999999999999872 3445555567777777776422
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
.. .-.++++|.|+|... .
T Consensus 285 s~-----------------~~drvlvigaTN~P~---e------------------------------------------ 302 (428)
T KOG0740|consen 285 SA-----------------PDDRVLVIGATNRPW---E------------------------------------------ 302 (428)
T ss_pred CC-----------------CCCeEEEEecCCCch---H------------------------------------------
Confidence 11 112577777766321 0
Q ss_pred HHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHH
Q 005663 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 li~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~ 597 (684)
+...++.||...+.++.++.+....++.. ++. .. .-.+++..++.|++ ...+++.-.+..
T Consensus 303 -----~Dea~~Rrf~kr~yiplPd~etr~~~~~~----ll~-------~~--~~~l~~~d~~~l~~--~Tegysgsdi~~ 362 (428)
T KOG0740|consen 303 -----LDEAARRRFVKRLYIPLPDYETRSLLWKQ----LLK-------EQ--PNGLSDLDISLLAK--VTEGYSGSDITA 362 (428)
T ss_pred -----HHHHHHHHhhceeeecCCCHHHHHHHHHH----HHH-------hC--CCCccHHHHHHHHH--HhcCcccccHHH
Confidence 11233447777788888888888888875 222 12 33467788888988 456666667777
Q ss_pred HHHHHHHHHHhcCC
Q 005663 598 LLENILMDAMYEIP 611 (684)
Q Consensus 598 iIe~~l~~al~e~~ 611 (684)
++..+....+.++.
T Consensus 363 l~kea~~~p~r~~~ 376 (428)
T KOG0740|consen 363 LCKEAAMGPLRELG 376 (428)
T ss_pred HHHHhhcCchhhcc
Confidence 77776665554443
No 97
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.6e-13 Score=149.76 Aligned_cols=184 Identities=26% Similarity=0.322 Sum_probs=121.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+++++.+..++... ..++.+||+||||||||++|+++|+.++..
T Consensus 18 iiGq~~~~~~l~~~~~~~-------------------------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~ 66 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLG-------------------------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQN 66 (363)
T ss_pred ccChHHHHHHHHHHHHcC-------------------------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCC
Confidence 799999999998887410 012567999999999999999999998532
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.++++. ..+ -..++++..............|++|||+|++...
T Consensus 67 ~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~-----~~~---v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~---- 134 (363)
T PRK14961 67 GITSNPCRKCIICKEIEKGLCLDLIEIDAAS-----RTK---VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH---- 134 (363)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH----
Confidence 12122110 011 1223344332211111234569999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...++.||++++. ++
T Consensus 135 ----------a~naLLk~lEe---------------------~~~~~~fIl~t~~--~~--------------------- 160 (363)
T PRK14961 135 ----------SFNALLKTLEE---------------------PPQHIKFILATTD--VE--------------------- 160 (363)
T ss_pred ----------HHHHHHHHHhc---------------------CCCCeEEEEEcCC--hH---------------------
Confidence 89999999982 1123556665441 11
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+.+|.- .+.|.+++.+++.+++...+ +.. .+.++
T Consensus 161 ---------------------------~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~~-----------~~~--g~~i~ 199 (363)
T PRK14961 161 ---------------------------KIPKTILSRCL-QFKLKIISEEKIFNFLKYIL-----------IKE--SIDTD 199 (363)
T ss_pred ---------------------------hhhHHHHhhce-EEeCCCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 13456777874 78999999999998876521 112 46689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ +++.|.+.+.++.++
T Consensus 200 ~~al~~ia~~s---~G~~R~al~~l~~~~ 225 (363)
T PRK14961 200 EYALKLIAYHA---HGSMRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999963 345788888888765
No 98
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.54 E-value=6.6e-14 Score=165.45 Aligned_cols=191 Identities=21% Similarity=0.301 Sum_probs=134.8
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005663 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
.|+ .|+|+++.++.+.+.+... .+.++||+||||||||++|+++|+.
T Consensus 180 ~l~-~~igr~~ei~~~~~~L~~~--------------------------------~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 180 KID-PLIGREDELERTIQVLCRR--------------------------------KKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCC-cccCcHHHHHHHHHHHhcC--------------------------------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 344 4799999999888776411 1268999999999999999999998
Q ss_pred h----------CCCEEEEecccccc-CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCch
Q 005663 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 354 l----------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~ 422 (684)
+ +..++.+|++.+.. ..|.|+- +..+..++..+.. ..+.||||||||.+...+...+++
T Consensus 227 ~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~~~----- 296 (731)
T TIGR02639 227 IAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATSGGS----- 296 (731)
T ss_pred HHhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCCCcc-----
Confidence 7 66789999887763 4677765 6778888765432 346899999999998753221111
Q ss_pred HHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCch
Q 005663 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~ 502 (684)
..+++.|+..|+. ..+.+|.++|..+..+.+
T Consensus 297 ~~~~~~L~~~l~~-----------------------g~i~~IgaTt~~e~~~~~-------------------------- 327 (731)
T TIGR02639 297 MDASNLLKPALSS-----------------------GKLRCIGSTTYEEYKNHF-------------------------- 327 (731)
T ss_pred HHHHHHHHHHHhC-----------------------CCeEEEEecCHHHHHHHh--------------------------
Confidence 2277888888871 125567676632211111
Q ss_pred hhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHH
Q 005663 503 AVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La 582 (684)
...+.|.+||. +|.+.+++.++..+|++..+ .+|.... .+.++++++..++
T Consensus 328 -------------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~----~~~e~~~-----~v~i~~~al~~~~ 378 (731)
T TIGR02639 328 -------------------EKDRALSRRFQ-KIDVGEPSIEETVKILKGLK----EKYEEFH-----HVKYSDEALEAAV 378 (731)
T ss_pred -------------------hhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHH----HHHHhcc-----CcccCHHHHHHHH
Confidence 12488899997 68999999999999998633 3333211 4679999999998
Q ss_pred Hhc
Q 005663 583 KKA 585 (684)
Q Consensus 583 ~~a 585 (684)
+.+
T Consensus 379 ~ls 381 (731)
T TIGR02639 379 ELS 381 (731)
T ss_pred Hhh
Confidence 863
No 99
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.53 E-value=5.9e-14 Score=149.07 Aligned_cols=215 Identities=22% Similarity=0.302 Sum_probs=142.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC---EEEEeccccccCCccccchHHHHHHHHhccc-chHHhhcCCEEEEccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGYVGEDVESILYKLLTVSD-YNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p---fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~-~~v~~a~~gVLfIDEIdk 406 (684)
..++||||||||||+||+.|+.-...+ |+.++++.-. -+-++..|+.+. .......+.|||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 688999999999999999999888766 8888876533 233445554432 223345678999999999
Q ss_pred cchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCC
Q 005663 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lG 486 (684)
+.+. .|+.||..+|.+ .|++|-+++-+
T Consensus 234 FNks--------------QQD~fLP~VE~G-----------------------~I~lIGATTEN---------------- 260 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVENG-----------------------DITLIGATTEN---------------- 260 (554)
T ss_pred hhhh--------------hhhcccceeccC-----------------------ceEEEecccCC----------------
Confidence 9887 899999999821 14555443300
Q ss_pred cCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhh
Q 005663 487 FGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (684)
Q Consensus 487 f~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~ 566 (684)
-++.+..+|++|.. ++.+.+|..+++..|+.+.++.|.+.-+..-..
T Consensus 261 --------------------------------PSFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l 307 (554)
T KOG2028|consen 261 --------------------------------PSFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPL 307 (554)
T ss_pred --------------------------------CccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCC
Confidence 01245678888987 688999999999999998776665321111112
Q ss_pred CCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCcccCCCcceEEcCCC
Q 005663 567 NGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKG 646 (684)
Q Consensus 567 ~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~~~~~~~i~~~~g 646 (684)
.+..+.+++.++++|+..+ .+.||---|.+|-.+.....+... -+.+++..+.+++..+ .-.++|+..
T Consensus 308 ~n~s~~ve~siidyla~ls---dGDaR~aLN~Lems~~m~~tr~g~-------~~~~~lSidDvke~lq--~s~~~YDr~ 375 (554)
T KOG2028|consen 308 PNSSMFVEDSIIDYLAYLS---DGDARAALNALEMSLSMFCTRSGQ-------SSRVLLSIDDVKEGLQ--RSHILYDRA 375 (554)
T ss_pred CCcchhhhHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhhcCC-------cccceecHHHHHHHHh--hccceeccc
Confidence 2334568999999999863 345777777777654433322221 1456777776665442 123666666
Q ss_pred hHHHHH
Q 005663 647 ALDRYL 652 (684)
Q Consensus 647 ~l~~~l 652 (684)
.-++|-
T Consensus 376 Ge~HYn 381 (554)
T KOG2028|consen 376 GEEHYN 381 (554)
T ss_pred chhHHH
Confidence 666663
No 100
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.4e-14 Score=151.97 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=120.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCC--EE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQG--IV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---------~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~g--VL 399 (684)
+-+||+||||||||+|+|++|+.+ ...++.+|+..+. ++|++++ ++.+.++|+.-...++. .++ .+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~d-~~~lVfv 254 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVED-RGNLVFV 254 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHhC-CCcEEEE
Confidence 678999999999999999999988 2358899999888 8899998 89999998875544332 333 36
Q ss_pred EEccccccchhhcccccCCCCc-hHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHh
Q 005663 400 YIDEVDKITKKAESLNISRDVS-GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 400 fIDEIdkl~~~r~~~~~~~d~~-~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~ 478 (684)
+|||++.+...|.+...++..+ .-+|.++||..||. .-...|+++++|+|..+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr-------------------lK~~~NvliL~TSNl~~------- 308 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR-------------------LKRYPNVLILATSNLTD------- 308 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-------------------hccCCCEEEEeccchHH-------
Confidence 7899999999886544443333 34799999999991 11345788888876211
Q ss_pred ccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHH
Q 005663 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (684)
Q Consensus 479 r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~k 558 (684)
.+.-.|+.|-|++...-+++.+.+.+|++..+.++++
T Consensus 309 -------------------------------------------siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 309 -------------------------------------------SIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred -------------------------------------------HHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 1336788999999999999999999999988777754
No 101
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.53 E-value=1.7e-13 Score=162.12 Aligned_cols=218 Identities=23% Similarity=0.320 Sum_probs=146.7
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|.|++++++.+.+.+....+...... ..+. .++.++||+||||||||++|+++|+.++.+|
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~----~~gi---------------~~~~giLL~GppGtGKT~laraia~~~~~~~ 240 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFE----HLGI---------------EPPKGVLLYGPPGTGKTLLAKAVANEAGAYF 240 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHH----hcCC---------------CCCceEEEECCCCCChHHHHHHHHHHhCCeE
Confidence 78999999999998863322211100 0000 1237899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|.|+. +..++.+|+.+. ...++||||||||.+...++... .....++++.|+.+|++..
T Consensus 241 i~i~~~~i~-~~~~g~~-~~~l~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~- 310 (733)
T TIGR01243 241 ISINGPEIM-SKYYGES-EERLREIFKEAE----ENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLK- 310 (733)
T ss_pred EEEecHHHh-cccccHH-HHHHHHHHHHHH----hcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccc-
Confidence 999999887 5688876 567777877653 24678999999999987754321 1223458999999998421
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
....+++|+++|..+
T Consensus 311 ------------------~~~~vivI~atn~~~----------------------------------------------- 325 (733)
T TIGR01243 311 ------------------GRGRVIVIGATNRPD----------------------------------------------- 325 (733)
T ss_pred ------------------cCCCEEEEeecCChh-----------------------------------------------
Confidence 112356666655211
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.++ +||+..+.+..++.++..+|+.... .+..+ -++..++.+++. ..++-...|.
T Consensus 326 ---~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~-------------~~~~l-~~d~~l~~la~~--t~G~~gadl~ 386 (733)
T TIGR01243 326 ---ALDPALRRPGRFDREIVIRVPDKRARKEILKVHT-------------RNMPL-AEDVDLDKLAEV--THGFVGADLA 386 (733)
T ss_pred ---hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh-------------cCCCC-ccccCHHHHHHh--CCCCCHHHHH
Confidence 1234444 4899999999999999999887321 11111 123346667774 4555556777
Q ss_pred HHHHHHHHHHHhc
Q 005663 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
.++......++.+
T Consensus 387 ~l~~~a~~~al~r 399 (733)
T TIGR01243 387 ALAKEAAMAALRR 399 (733)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766665544
No 102
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.53 E-value=1.6e-13 Score=143.67 Aligned_cols=175 Identities=26% Similarity=0.366 Sum_probs=114.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
++||+.+++.|..++.. + ...++|||||||||||+.|+++|+.++.+
T Consensus 38 ~~gQe~vV~~L~~a~~~---~-----------------------------~lp~~LFyGPpGTGKTStalafar~L~~~~ 85 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLR---R-----------------------------ILPHYLFYGPPGTGKTSTALAFARALNCEQ 85 (346)
T ss_pred hcchHHHHHHHHHHHhh---c-----------------------------CCceEEeeCCCCCcHhHHHHHHHHHhcCcc
Confidence 69999999999999851 0 12699999999999999999999999763
Q ss_pred -----EEEEeccccccCCccccchHHHHHHHHhcc--cchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 358 -----FVIADATTLTQAGYVGEDVESILYKLLTVS--DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 358 -----fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a--~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+...++++-..-..+.+.. ..+..+.... ..........||+|||.|.|+.+ .|.+|+
T Consensus 86 ~~~~rvl~lnaSderGisvvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aLr 150 (346)
T KOG0989|consen 86 LFPCRVLELNASDERGISVVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAALR 150 (346)
T ss_pred ccccchhhhcccccccccchhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHHH
Confidence 3334444332111111111 1111111111 00111223479999999999988 999999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
+.||.. .+++.||+-.|.. +
T Consensus 151 r~mE~~---------------------s~~trFiLIcnyl--s------------------------------------- 170 (346)
T KOG0989|consen 151 RTMEDF---------------------SRTTRFILICNYL--S------------------------------------- 170 (346)
T ss_pred HHHhcc---------------------ccceEEEEEcCCh--h-------------------------------------
Confidence 999931 1223344433321 1
Q ss_pred hhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhc
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a 585 (684)
.+++++.+|.. -+.|.++..+++...++. + ...+ .+.+++++++.|++.+
T Consensus 171 -----------rii~pi~SRC~-KfrFk~L~d~~iv~rL~~----I-------a~~E--~v~~d~~al~~I~~~S 220 (346)
T KOG0989|consen 171 -----------RIIRPLVSRCQ-KFRFKKLKDEDIVDRLEK----I-------ASKE--GVDIDDDALKLIAKIS 220 (346)
T ss_pred -----------hCChHHHhhHH-HhcCCCcchHHHHHHHHH----H-------HHHh--CCCCCHHHHHHHHHHc
Confidence 35677888887 588999999888777754 2 1112 6779999999999963
No 103
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.5e-13 Score=156.99 Aligned_cols=184 Identities=28% Similarity=0.322 Sum_probs=125.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
||||+.+++.|..++.... -++.+||+||+|||||++|+++|+.++..
T Consensus 18 ivGQe~vv~~L~~~l~~~r-------------------------------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~ 66 (647)
T PRK07994 18 VVGQEHVLTALANALDLGR-------------------------------LHHAYLFSGTRGVGKTTIARLLAKGLNCET 66 (647)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 7999999999998885110 02457999999999999999999998652
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.++.++ ..+. ..++++.....+........|+||||+|+|...
T Consensus 67 ~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~V---ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~---- 134 (647)
T PRK07994 67 GITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTKV---EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH---- 134 (647)
T ss_pred CCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCCH---HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH----
Confidence 22233221 1221 224444433222112245579999999999987
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++..
T Consensus 135 ----------a~NALLKtLEE---------------------Pp~~v~FIL~Tt~~------------------------ 159 (647)
T PRK07994 135 ----------SFNALLKTLEE---------------------PPEHVKFLLATTDP------------------------ 159 (647)
T ss_pred ----------HHHHHHHHHHc---------------------CCCCeEEEEecCCc------------------------
Confidence 99999999993 12346677765411
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
..+.+.+++|. ..+.|.+++.+++...+...+ ... .+.++
T Consensus 160 --------------------------~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il-----------~~e--~i~~e 199 (647)
T PRK07994 160 --------------------------QKLPVTILSRC-LQFHLKALDVEQIRQQLEHIL-----------QAE--QIPFE 199 (647)
T ss_pred --------------------------cccchHHHhhh-eEeeCCCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 02456778885 589999999999988776521 112 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
++++..|++.+ ++..|...++++..+
T Consensus 200 ~~aL~~Ia~~s---~Gs~R~Al~lldqai 225 (647)
T PRK07994 200 PRALQLLARAA---DGSMRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999863 445687777776554
No 104
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.51 E-value=4.8e-13 Score=155.18 Aligned_cols=214 Identities=26% Similarity=0.352 Sum_probs=134.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---- 354 (684)
++||+.+++.+...+... .+.+++|+||||||||++|+++++..
T Consensus 156 iiGqs~~~~~l~~~ia~~--------------------------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~ 203 (615)
T TIGR02903 156 IVGQERAIKALLAKVASP--------------------------------FPQHIILYGPPGVGKTTAARLALEEAKKLK 203 (615)
T ss_pred ceeCcHHHHHHHHHHhcC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 789999999876555310 02689999999999999999998665
Q ss_pred ------CCCEEEEecccccc------CCccccchHHH---HHHHH------hcccchHHhhcCCEEEEccccccchhhcc
Q 005663 355 ------NVPFVIADATTLTQ------AGYVGEDVESI---LYKLL------TVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 355 ------~~pfv~v~~s~l~~------sgyvG~~~~~~---l~~l~------~~a~~~v~~a~~gVLfIDEIdkl~~~r~~ 413 (684)
+.+|+.++|..+.. ..++|...... ....+ ....+.+..+.+|+|||||++.|...
T Consensus 204 ~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--- 280 (615)
T TIGR02903 204 HTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--- 280 (615)
T ss_pred CCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH---
Confidence 35799999987631 11222110000 01111 11234566778899999999999988
Q ss_pred cccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCce---------EEeeccEEEEeCCCCcCHHHHHHhccccCC
Q 005663 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNI---------QIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i---------~IdtsNiifI~tgn~~dLek~i~~r~~~~~ 484 (684)
.|+.|+++|+...+.+.. + ..+.....+ .....++++|++++...
T Consensus 281 -----------~Q~~Ll~~Le~~~v~~~~-~-~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~------------- 334 (615)
T TIGR02903 281 -----------LQNKLLKVLEDKRVEFSS-S-YYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP------------- 334 (615)
T ss_pred -----------HHHHHHHHHhhCeEEeec-c-eeccCCcccchhhhhhcccCccceEEEEEeccccc-------------
Confidence 999999999855443211 1 000000000 00122355555443100
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHH
Q 005663 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 485 lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~ 564 (684)
..+.|.|++|+. .+.|++++.+|+..|+...+..
T Consensus 335 ------------------------------------~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~--------- 368 (615)
T TIGR02903 335 ------------------------------------EEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEK--------- 368 (615)
T ss_pred ------------------------------------cccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHH---------
Confidence 024578888987 5689999999999999863221
Q ss_pred hhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 565 QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 565 ~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
. .+.+++++++.|++++ |+ +|..-++++.++.-++
T Consensus 369 --~--~v~ls~eal~~L~~ys--~~--gRraln~L~~~~~~~~ 403 (615)
T TIGR02903 369 --I--NVHLAAGVEELIARYT--IE--GRKAVNILADVYGYAL 403 (615)
T ss_pred --c--CCCCCHHHHHHHHHCC--Cc--HHHHHHHHHHHHHHHH
Confidence 1 3458999999999954 43 3655577777654443
No 105
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.51 E-value=4.3e-14 Score=142.23 Aligned_cols=182 Identities=20% Similarity=0.312 Sum_probs=82.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+||+.+|+.|..++. ...|+||+||||||||++|++++..+-.-
T Consensus 4 dI~GQe~aKrAL~iAAa----------------------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l 49 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAA----------------------------------GGHHLLLIGPPGTGKTMLARRLPSLLPPL 49 (206)
T ss_dssp CSSSTHHHHHHHHHHHH----------------------------------CC--EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred hhcCcHHHHHHHHHHHc----------------------------------CCCCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence 48999999999999885 12799999999999999999999877210
Q ss_pred EEEEeccccc----------------cCCcc----ccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccC
Q 005663 358 FVIADATTLT----------------QAGYV----GEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 358 fv~v~~s~l~----------------~sgyv----G~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~ 417 (684)
-....-++. ..-|. ..+..+.+..-....++.+..|++|||||||+-.+.+.
T Consensus 50 -~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~------- 121 (206)
T PF01078_consen 50 -TEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS------- 121 (206)
T ss_dssp -CEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH-------
T ss_pred -chHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH-------
Confidence 000000000 00000 00111111111123467788999999999999999887
Q ss_pred CCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCc-ccccccc
Q 005663 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA-PVRANMR 496 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~-~v~~~~~ 496 (684)
+.+.|++.||.+.+.|...|. ...--.++++|+|.|. +..||-. +...+.+
T Consensus 122 -------vld~Lr~ple~g~v~i~R~~~--------~~~~Pa~f~lv~a~NP-------------cpCG~~~~~~~~C~C 173 (206)
T PF01078_consen 122 -------VLDALRQPLEDGEVTISRAGG--------SVTYPARFLLVAAMNP-------------CPCGYYGDPDNRCRC 173 (206)
T ss_dssp -------HHHHHHHHHHHSBEEEEETTE--------EEEEB--EEEEEEE-S----------------------------
T ss_pred -------HHHHHHHHHHCCeEEEEECCc--------eEEEecccEEEEEecc-------------ccccccccccccccc
Confidence 999999999966666533222 2345567888888763 4555422 2222221
Q ss_pred cCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHH
Q 005663 497 AGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQ 544 (684)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~ee 544 (684)
.+.....+++ .+.-+|++|||..+.+++++.+|
T Consensus 174 -----s~~~~~~Y~~----------rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 174 -----SPRQIRRYQS----------RLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ------------------------------------------------
T ss_pred -----cccccccccc----------cccccccccccccccccccccCC
Confidence 1122233333 35689999999999998887654
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.7e-13 Score=160.97 Aligned_cols=184 Identities=26% Similarity=0.281 Sum_probs=124.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
||||+.+++.|...+.... -.+.+||+||+|||||++|++||+.+++.
T Consensus 17 iiGqe~v~~~L~~~i~~~r-------------------------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~ 65 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSGR-------------------------------INHAYLFSGPRGCGKTSSARILARSLNCVE 65 (824)
T ss_pred hcCcHHHHHHHHHHHHhCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhCccc
Confidence 7999999999998885100 01458999999999999999999999641
Q ss_pred -------------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhc
Q 005663 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 358 -------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~ 412 (684)
++.+|... ..|. ..++++.....+........|+||||+|+|...
T Consensus 66 ~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas-----~~~V---d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-- 135 (824)
T PRK07764 66 GPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS-----HGGV---DDARELRERAFFAPAESRYKIFIIDEAHMVTPQ-- 135 (824)
T ss_pred CCCCCCCcccHHHHHHHcCCCCCCcEEEecccc-----cCCH---HHHHHHHHHHHhchhcCCceEEEEechhhcCHH--
Confidence 22222211 1121 223333322211112345679999999999887
Q ss_pred ccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccc
Q 005663 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~ 492 (684)
.++.||+.||. ...+++||++++. .++
T Consensus 136 ------------a~NaLLK~LEE---------------------pP~~~~fIl~tt~--~~k------------------ 162 (824)
T PRK07764 136 ------------GFNALLKIVEE---------------------PPEHLKFIFATTE--PDK------------------ 162 (824)
T ss_pred ------------HHHHHHHHHhC---------------------CCCCeEEEEEeCC--hhh------------------
Confidence 89999999992 1234667765541 111
Q ss_pred cccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceee
Q 005663 493 ANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ 572 (684)
+.+.+++|.. ++.|.+++.+++.+++.+. ++.. .+.
T Consensus 163 ------------------------------Ll~TIrSRc~-~v~F~~l~~~~l~~~L~~i-----------l~~E--Gv~ 198 (824)
T PRK07764 163 ------------------------------VIGTIRSRTH-HYPFRLVPPEVMRGYLERI-----------CAQE--GVP 198 (824)
T ss_pred ------------------------------hhHHHHhhee-EEEeeCCCHHHHHHHHHHH-----------HHHc--CCC
Confidence 2345566664 7899999999998887652 2223 466
Q ss_pred cCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 573 FTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 573 iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
++++++.+|++.+ ++..|.+.+.+++++
T Consensus 199 id~eal~lLa~~s---gGdlR~Al~eLEKLi 226 (824)
T PRK07764 199 VEPGVLPLVIRAG---GGSVRDSLSVLDQLL 226 (824)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 8999999999964 345789999999877
No 107
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4e-13 Score=152.04 Aligned_cols=185 Identities=28% Similarity=0.362 Sum_probs=127.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
++||+.+++.|..++... ..+.++||+||+|||||++|+++|+.++..
T Consensus 23 liGq~~vv~~L~~ai~~~-------------------------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 23 LQGQEVLVKVLSYTILND-------------------------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 699999999998877411 012689999999999999999999998642
Q ss_pred ---------------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 358 ---------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 358 ---------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
++.+|+. .-.| -..++++++.+......+...|++|||+|.+...
T Consensus 72 ~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa-----s~~~---vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~ 143 (507)
T PRK06645 72 LITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA-----SKTS---VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG 143 (507)
T ss_pred ccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc-----CCCC---HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH
Confidence 1222221 1112 1234444444332222356789999999999876
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcc
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~ 490 (684)
.+++||+.||. ...+++||++++. .+
T Consensus 144 --------------a~naLLk~LEe---------------------pp~~~vfI~aTte--~~----------------- 169 (507)
T PRK06645 144 --------------AFNALLKTLEE---------------------PPPHIIFIFATTE--VQ----------------- 169 (507)
T ss_pred --------------HHHHHHHHHhh---------------------cCCCEEEEEEeCC--hH-----------------
Confidence 89999999982 1223566665441 11
Q ss_pred cccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCce
Q 005663 491 VRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~ 570 (684)
.+.+.+.+|.. .+.|.+++.+++.+++...+ +.. .
T Consensus 170 -------------------------------kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~-----------~~e--g 204 (507)
T PRK06645 170 -------------------------------KIPATIISRCQ-RYDLRRLSFEEIFKLLEYIT-----------KQE--N 204 (507)
T ss_pred -------------------------------HhhHHHHhcce-EEEccCCCHHHHHHHHHHHH-----------HHc--C
Confidence 12355667774 78999999999998887632 122 4
Q ss_pred eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+.+++++++.|++.+ +++.|.+-+.+++++.
T Consensus 205 i~ie~eAL~~Ia~~s---~GslR~al~~Ldkai~ 235 (507)
T PRK06645 205 LKTDIEALRIIAYKS---EGSARDAVSILDQAAS 235 (507)
T ss_pred CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 668999999999963 4568999999988764
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.4e-13 Score=153.89 Aligned_cols=185 Identities=25% Similarity=0.317 Sum_probs=125.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.|..++... ..++.+||+||+|||||++|+++|+.++..
T Consensus 15 ivGq~~i~~~L~~~i~~~-------------------------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 63 (584)
T PRK14952 15 VVGQEHVTEPLSSALDAG-------------------------------RINHAYLFSGPRGCGKTSSARILARSLNCAQ 63 (584)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 799999999999888510 001457999999999999999999988631
Q ss_pred -------------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhc
Q 005663 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 358 -------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~ 412 (684)
++.+|++ ...|.+ .++++..........+...|++|||+|.|...
T Consensus 64 ~~~~~pCg~C~~C~~i~~~~~~~~dvieidaa-----s~~gvd---~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-- 133 (584)
T PRK14952 64 GPTATPCGVCESCVALAPNGPGSIDVVELDAA-----SHGGVD---DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-- 133 (584)
T ss_pred CCCCCcccccHHHHHhhcccCCCceEEEeccc-----cccCHH---HHHHHHHHHHhhhhcCCceEEEEECCCcCCHH--
Confidence 2222221 111222 23333322222112345679999999999877
Q ss_pred ccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccc
Q 005663 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~ 492 (684)
.+++||+.||. ...+++||++++.. .
T Consensus 134 ------------A~NALLK~LEE---------------------pp~~~~fIL~tte~--~------------------- 159 (584)
T PRK14952 134 ------------GFNALLKIVEE---------------------PPEHLIFIFATTEP--E------------------- 159 (584)
T ss_pred ------------HHHHHHHHHhc---------------------CCCCeEEEEEeCCh--H-------------------
Confidence 99999999992 22346777765411 1
Q ss_pred cccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceee
Q 005663 493 ANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ 572 (684)
.+.+.+++|. .++.|.+++.+++.+.+... ++.. .+.
T Consensus 160 -----------------------------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i-----------~~~e--gi~ 196 (584)
T PRK14952 160 -----------------------------KVLPTIRSRT-HHYPFRLLPPRTMRALIARI-----------CEQE--GVV 196 (584)
T ss_pred -----------------------------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHH-----------HHHc--CCC
Confidence 2346677785 47999999999988777542 1222 466
Q ss_pred cCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 573 FTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 573 iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.+|++.+ +++.|.+.++++.++.
T Consensus 197 i~~~al~~Ia~~s---~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 197 VDDAVYPLVIRAG---GGSPRDTLSVLDQLLA 225 (584)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 8999999999863 4557999999988764
No 109
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.6e-13 Score=151.58 Aligned_cols=185 Identities=25% Similarity=0.360 Sum_probs=127.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
|+||+.+++.|..++... ..+.++||+||+|||||++|+.+|+.++.
T Consensus 15 liGQe~vv~~L~~a~~~~-------------------------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 15 LVGQDVLVRILRNAFTLN-------------------------------KIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 799999999998877410 01368999999999999999999997742
Q ss_pred ----------------------CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
.++.+|+++ ..|.+ .+++++.........+...|++|||+|.|...
T Consensus 64 ~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-----~~~vd---dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~---- 131 (491)
T PRK14964 64 GPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-----NTSVD---DIKVILENSCYLPISSKFKVYIIDEVHMLSNS---- 131 (491)
T ss_pred CCCCCCccccHHHHHHhccCCCCEEEEeccc-----CCCHH---HHHHHHHHHHhccccCCceEEEEeChHhCCHH----
Confidence 234444432 22322 24444433322222356789999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ....++||++++ +.++
T Consensus 132 ----------A~NaLLK~LEe---------------------Pp~~v~fIlatt--e~~K-------------------- 158 (491)
T PRK14964 132 ----------AFNALLKTLEE---------------------PAPHVKFILATT--EVKK-------------------- 158 (491)
T ss_pred ----------HHHHHHHHHhC---------------------CCCCeEEEEEeC--ChHH--------------------
Confidence 89999999992 112356666554 1111
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
+.+.+++|.. .+.|.+++.+++.+.+...+ +.. .+.++
T Consensus 159 ----------------------------l~~tI~SRc~-~~~f~~l~~~el~~~L~~ia-----------~~E--gi~i~ 196 (491)
T PRK14964 159 ----------------------------IPVTIISRCQ-RFDLQKIPTDKLVEHLVDIA-----------KKE--NIEHD 196 (491)
T ss_pred ----------------------------HHHHHHHhhe-eeecccccHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 2244556664 68999999999888776521 112 56799
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ +++.|.+.+.+++++.
T Consensus 197 ~eAL~lIa~~s---~GslR~alslLdqli~ 223 (491)
T PRK14964 197 EESLKLIAENS---SGSMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999974 4568999898888764
No 110
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.50 E-value=4.3e-13 Score=144.94 Aligned_cols=228 Identities=21% Similarity=0.291 Sum_probs=138.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.|+||+++|+.|..++..+. ..++||.|+||+|||+++++++..+
T Consensus 5 ~ivgq~~~~~al~~~~~~~~--------------------------------~g~vli~G~~G~gKttl~r~~~~~~~~~ 52 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPK--------------------------------IGGVMVMGDRGTGKSTAVRALAALLPEI 52 (337)
T ss_pred ccccHHHHHHHHHHHhcCCC--------------------------------CCeEEEEcCCCCCHHHHHHHHHHhhccc
Confidence 37999999999877664111 2789999999999999999999887
Q ss_pred ----CCCEE---------EEecc-------------------cc----ccCCccccch-HHHH-HHHHhcccchHHhhcC
Q 005663 355 ----NVPFV---------IADAT-------------------TL----TQAGYVGEDV-ESIL-YKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 355 ----~~pfv---------~v~~s-------------------~l----~~sgyvG~~~-~~~l-~~l~~~a~~~v~~a~~ 396 (684)
+.++- ..+|. ++ ++..++|... .+.+ ..-+...++.+..+.+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~ 132 (337)
T TIGR02030 53 KAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR 132 (337)
T ss_pred ccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC
Confidence 22221 00111 10 1113444321 1111 1111223456667889
Q ss_pred CEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHH
Q 005663 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 397 gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i 476 (684)
|+||||||+.+.+. +|+.|+++|+...+.+...|. ....+ .++++|++.|..
T Consensus 133 GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~-------~~~~~-~r~iviat~np~------ 184 (337)
T TIGR02030 133 GILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGI-------SIRHP-ARFVLVGSGNPE------ 184 (337)
T ss_pred CEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCE-------EEEcC-CCEEEEeccccc------
Confidence 99999999999888 999999999854433322222 11222 246666665421
Q ss_pred HhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCH-HHHHHHHhchHHH
Q 005663 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKNA 555 (684)
Q Consensus 477 ~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~-eel~~Il~~~l~~ 555 (684)
...|+++|++||...+.+..+.. ++..+|+......
T Consensus 185 -------------------------------------------eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~ 221 (337)
T TIGR02030 185 -------------------------------------------EGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEY 221 (337)
T ss_pred -------------------------------------------cCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhc
Confidence 11378999999999888888876 7777777652110
Q ss_pred ------H-----------HHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCC-ChHHHHHHHHHHHHHHHhc
Q 005663 556 ------L-----------GKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENILMDAMYE 609 (684)
Q Consensus 556 ------L-----------~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~-GAR~Lr~iIe~~l~~al~e 609 (684)
+ .++... ....-..+.+++++++++++.+..-+. |-|....++...-..|+.+
T Consensus 222 ~~~~~~~~~~~~~e~~~~~~~I~~-a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 222 DADPHAFCEKWQTEQEALQAKIVN-AQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred ccCchhhhhhhhhhhhcCHHHHHH-HHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 0 111111 111112577999999999886543232 5577777776655555544
No 111
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=5.4e-13 Score=152.05 Aligned_cols=185 Identities=25% Similarity=0.321 Sum_probs=124.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
|+||+.+++.|..++... + .+..+||+||+|||||++|+++|+.++.
T Consensus 18 iiGq~~~v~~L~~~i~~~------------r-------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~ 66 (546)
T PRK14957 18 VAGQQHALNSLVHALETQ------------K-------------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKT 66 (546)
T ss_pred hcCcHHHHHHHHHHHHcC------------C-------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 799999999998887410 0 0256899999999999999999998853
Q ss_pred ----------------------CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
.++.+++. ...|.+ .+++++.............|++|||+|++...
T Consensus 67 ~~~~~pCg~C~sC~~i~~~~~~dlieidaa-----s~~gvd---~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~---- 134 (546)
T PRK14957 67 GVTAEPCNKCENCVAINNNSFIDLIEIDAA-----SRTGVE---ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ---- 134 (546)
T ss_pred CCCCCCCcccHHHHHHhcCCCCceEEeecc-----cccCHH---HHHHHHHHHHhhhhcCCcEEEEEechhhccHH----
Confidence 12223321 122322 22333322221112345679999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.++.||+.||.. ..+++||++++ +..
T Consensus 135 ----------a~naLLK~LEep---------------------p~~v~fIL~Tt--d~~--------------------- 160 (546)
T PRK14957 135 ----------SFNALLKTLEEP---------------------PEYVKFILATT--DYH--------------------- 160 (546)
T ss_pred ----------HHHHHHHHHhcC---------------------CCCceEEEEEC--Chh---------------------
Confidence 899999999921 12345555443 110
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+++|.. ++.|.+++.+++.+.+...+ ... .+.++
T Consensus 161 ---------------------------kil~tI~SRc~-~~~f~~Ls~~eI~~~L~~il-----------~~e--gi~~e 199 (546)
T PRK14957 161 ---------------------------KIPVTILSRCI-QLHLKHISQADIKDQLKIIL-----------AKE--NINSD 199 (546)
T ss_pred ---------------------------hhhhhHHHhee-eEEeCCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 13355777874 89999999999888776521 112 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ ++..|.+-+.++.++.
T Consensus 200 ~~Al~~Ia~~s---~GdlR~alnlLek~i~ 226 (546)
T PRK14957 200 EQSLEYIAYHA---KGSLRDALSLLDQAIS 226 (546)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999964 4558989899887663
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.5e-13 Score=153.90 Aligned_cols=184 Identities=28% Similarity=0.337 Sum_probs=123.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.|..++.+.. -+..+||+||+|||||++|+++|+.++..
T Consensus 18 IiGQe~v~~~L~~ai~~~r-------------------------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~ 66 (624)
T PRK14959 18 VAGQETVKAILSRAAQENR-------------------------------VAPAYLFSGTRGVGKTTIARIFAKALNCET 66 (624)
T ss_pred hcCCHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHhccccC
Confidence 6999999999998885110 02688999999999999999999999642
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.++.. ...|-+.-+.+.+.+...+ ......||||||+|.|...
T Consensus 67 ~~~~~pCg~C~sC~~i~~g~hpDv~eId~a-----~~~~Id~iR~L~~~~~~~p---~~g~~kVIIIDEad~Lt~~---- 134 (624)
T PRK14959 67 APTGEPCNTCEQCRKVTQGMHVDVVEIDGA-----SNRGIDDAKRLKEAIGYAP---MEGRYKVFIIDEAHMLTRE---- 134 (624)
T ss_pred CCCCCCCcccHHHHHHhcCCCCceEEEecc-----cccCHHHHHHHHHHHHhhh---hcCCceEEEEEChHhCCHH----
Confidence 3333321 1122222222333332222 1245679999999999877
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++...
T Consensus 135 ----------a~naLLk~LEE---------------------P~~~~ifILaTt~~~----------------------- 160 (624)
T PRK14959 135 ----------AFNALLKTLEE---------------------PPARVTFVLATTEPH----------------------- 160 (624)
T ss_pred ----------HHHHHHHHhhc---------------------cCCCEEEEEecCChh-----------------------
Confidence 89999999982 112366666554110
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+++|+. ++.|.+++.+++.+++...+ ... .+.++
T Consensus 161 ---------------------------kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il-----------~~e--gi~id 199 (624)
T PRK14959 161 ---------------------------KFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVL-----------GRE--GVDYD 199 (624)
T ss_pred ---------------------------hhhHHHHhhhh-ccccCCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 12345666765 67899999999998886521 112 46699
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ ++++|..-+++++++
T Consensus 200 ~eal~lIA~~s---~GdlR~Al~lLeqll 225 (624)
T PRK14959 200 PAAVRLIARRA---AGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999964 345788888887653
No 113
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.49 E-value=5.9e-13 Score=143.67 Aligned_cols=226 Identities=21% Similarity=0.284 Sum_probs=135.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~--- 355 (684)
|+||+++|+.+..++.+ . ...|+||.|+||||||++|+++++.+.
T Consensus 10 i~Gq~~~~~~l~~~~~~--------------~------------------~~~~vLl~G~pG~gKT~lar~la~llP~~~ 57 (334)
T PRK13407 10 IVGQEEMKQAMVLTAID--------------P------------------GIGGVLVFGDRGTGKSTAVRALAALLPLIK 57 (334)
T ss_pred hCCHHHHHHHHHHHHhc--------------c------------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcc
Confidence 79999999988865530 0 016899999999999999999999983
Q ss_pred ----CC--EEEEecc-cc----------------------ccCCccccch-HHHH-HHHHhcccchHHhhcCCEEEEccc
Q 005663 356 ----VP--FVIADAT-TL----------------------TQAGYVGEDV-ESIL-YKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 356 ----~p--fv~v~~s-~l----------------------~~sgyvG~~~-~~~l-~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.+ +..+.+. +. ++...+|.-. ...+ ..-+...++.+..+.+|+||||||
T Consensus 58 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEI 137 (334)
T PRK13407 58 AVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEV 137 (334)
T ss_pred hhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecCh
Confidence 21 1111110 00 1112344211 1110 011112345566678899999999
Q ss_pred cccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCC
Q 005663 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 405 dkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~ 484 (684)
+.+.++ +|+.|++.|+...+.|...|... . ....+++|++.|..+
T Consensus 138 nrl~~~--------------~q~~Lle~mee~~v~v~r~G~~~-------~-~p~rfiviAt~NP~e------------- 182 (334)
T PRK13407 138 NLLEDH--------------IVDLLLDVAQSGENVVEREGLSI-------R-HPARFVLVGSGNPEE------------- 182 (334)
T ss_pred HhCCHH--------------HHHHHHHHHHcCCeEEEECCeEE-------e-cCCCEEEEecCCccc-------------
Confidence 999988 99999999985554443233211 1 123466666655210
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCH-HHHHHHHhchHH------HHH
Q 005663 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN------ALG 557 (684)
Q Consensus 485 lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~-eel~~Il~~~l~------~L~ 557 (684)
..+.+.|+.||...+.+.+... ++..+|+..... .+.
T Consensus 183 ------------------------------------~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~ 226 (334)
T PRK13407 183 ------------------------------------GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFM 226 (334)
T ss_pred ------------------------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhh
Confidence 1367889999998888877666 776777765211 110
Q ss_pred -----------HHHHHHHhhCCceeecCHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHh
Q 005663 558 -----------KQYRKMFQMNGVKLHFTENALRLIAKKAISKN-TGARGLRSLLENILMDAMY 608 (684)
Q Consensus 558 -----------kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~-~GAR~Lr~iIe~~l~~al~ 608 (684)
.+... ....-..+.+++++++++++.+.... -|.|.--.++...-..++.
T Consensus 227 ~~~~~~~~~~~~~i~~-a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l 288 (334)
T PRK13407 227 AKWGAEDMQLRGRILG-ARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAF 288 (334)
T ss_pred ccccccccCCHHHHHH-HHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHH
Confidence 11111 11111257799999999998765433 3567666655554444443
No 114
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.48 E-value=7.2e-13 Score=154.30 Aligned_cols=223 Identities=22% Similarity=0.278 Sum_probs=139.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.|+||+.+|+.+..++.++. ..+|||.||+|||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~~~--------------------------------~g~vli~G~~GtgKs~lar~l~~~lp~~ 52 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDPR--------------------------------IGGVLIRGEKGTAKSTAARGLAALLPPI 52 (633)
T ss_pred hhcChHHHHHHHHHHhhCCC--------------------------------CCeEEEEcCCCCcHHHHHHHHHHhCCCc
Confidence 48999999998877664110 1689999999999999999999998
Q ss_pred --------------------------------CCCEEEEeccccccCCccccc-hHHHHH-HHHhcccchHHhhcCCEEE
Q 005663 355 --------------------------------NVPFVIADATTLTQAGYVGED-VESILY-KLLTVSDYNVAAAQQGIVY 400 (684)
Q Consensus 355 --------------------------------~~pfv~v~~s~l~~sgyvG~~-~~~~l~-~l~~~a~~~v~~a~~gVLf 400 (684)
..||+.+.++.. +..++|.. ....+. .-....++.+..+.+||||
T Consensus 53 ~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t-~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~ 131 (633)
T TIGR02442 53 DVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGAT-EDRVVGSLDIERALREGEKAFQPGLLAEAHRGILY 131 (633)
T ss_pred eeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCc-HHHcCCcccHHHHhhcCCeeecCcceeecCCCeEE
Confidence 246766655432 23345532 111111 0011234566678899999
Q ss_pred EccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhcc
Q 005663 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 401 IDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~ 480 (684)
||||+++.+. +|+.||++|+...+.|...|.. .. -..++++|+|.|..+
T Consensus 132 lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~-------~~-~~~~~~lIat~np~e--------- 180 (633)
T TIGR02442 132 IDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLS-------VS-HPARFVLIGTMNPEE--------- 180 (633)
T ss_pred eChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCce-------ee-ecCCeEEEEecCCCC---------
Confidence 9999999988 9999999998544333222221 11 224577777655210
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccC-HHHHHHHHhchHH-----
Q 005663 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKN----- 554 (684)
Q Consensus 481 ~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs-~eel~~Il~~~l~----- 554 (684)
..|.++|++||+..|.+.++. .++..+|+...+.
T Consensus 181 ----------------------------------------g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~ 220 (633)
T TIGR02442 181 ----------------------------------------GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADP 220 (633)
T ss_pred ----------------------------------------CCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCc
Confidence 136789999999888887665 4555666654211
Q ss_pred -HHHHHH----------HHHHhhCCceeecCHHHHHHHHHhcCCCCC-ChHHHHHHHHHHHH
Q 005663 555 -ALGKQY----------RKMFQMNGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENILM 604 (684)
Q Consensus 555 -~L~kqy----------~~~~~~~gv~l~iteeAl~~La~~a~~~~~-GAR~Lr~iIe~~l~ 604 (684)
.+...| .......--.+.++++++++|++.+...+. |.|....+++-+-.
T Consensus 221 ~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara 282 (633)
T TIGR02442 221 EAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARA 282 (633)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 000011 011111112467899999999997665555 56766666654433
No 115
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=4.8e-13 Score=154.56 Aligned_cols=185 Identities=26% Similarity=0.348 Sum_probs=126.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.|..++... ..+..+||+||+|||||++|+++|+.++.+
T Consensus 18 IIGQe~vv~~L~~ai~~~-------------------------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~ 66 (709)
T PRK08691 18 LVGQEHVVKALQNALDEG-------------------------------RLHHAYLLTGTRGVGKTTIARILAKSLNCEN 66 (709)
T ss_pred HcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccC
Confidence 799999999999888510 012678999999999999999999988543
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.++.. .-.| -..+++++.............||||||+|++...
T Consensus 67 ~~~~~pCg~C~sCr~i~~g~~~DvlEidaA-----s~~g---Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~---- 134 (709)
T PRK08691 67 AQHGEPCGVCQSCTQIDAGRYVDLLEIDAA-----SNTG---IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS---- 134 (709)
T ss_pred CCCCCCCcccHHHHHHhccCccceEEEecc-----ccCC---HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH----
Confidence 1122211 1112 1245555543322222345679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++..
T Consensus 135 ----------A~NALLKtLEE---------------------Pp~~v~fILaTtd~------------------------ 159 (709)
T PRK08691 135 ----------AFNAMLKTLEE---------------------PPEHVKFILATTDP------------------------ 159 (709)
T ss_pred ----------HHHHHHHHHHh---------------------CCCCcEEEEEeCCc------------------------
Confidence 89999999992 11235566655411
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
..+.+.+++|+- .+.|.+++.+++...+... +... .+.++
T Consensus 160 --------------------------~kL~~TIrSRC~-~f~f~~Ls~eeI~~~L~~I-----------l~kE--gi~id 199 (709)
T PRK08691 160 --------------------------HKVPVTVLSRCL-QFVLRNMTAQQVADHLAHV-----------LDSE--KIAYE 199 (709)
T ss_pred --------------------------cccchHHHHHHh-hhhcCCCCHHHHHHHHHHH-----------HHHc--CCCcC
Confidence 023355667773 5888999999998877652 2222 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ .++.|.+.+++++++.
T Consensus 200 ~eAL~~Ia~~A---~GslRdAlnLLDqaia 226 (709)
T PRK08691 200 PPALQLLGRAA---AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 99999999974 4668999999988765
No 116
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.48 E-value=8.4e-13 Score=143.08 Aligned_cols=227 Identities=22% Similarity=0.311 Sum_probs=139.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~--- 355 (684)
|+||+++|+.|..++.++ ..+++||.||+|||||++|+++++.+.
T Consensus 19 ivGq~~~k~al~~~~~~p--------------------------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~ 66 (350)
T CHL00081 19 IVGQEEMKLALILNVIDP--------------------------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIE 66 (350)
T ss_pred HhChHHHHHHHHHhccCC--------------------------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 899999999999887521 127899999999999999999988872
Q ss_pred ----CCEEEEecc-----------------------------cc----ccCCcccc-chHHHHHHH-HhcccchHHhhcC
Q 005663 356 ----VPFVIADAT-----------------------------TL----TQAGYVGE-DVESILYKL-LTVSDYNVAAAQQ 396 (684)
Q Consensus 356 ----~pfv~v~~s-----------------------------~l----~~sgyvG~-~~~~~l~~l-~~~a~~~v~~a~~ 396 (684)
.||. .+.. .+ ++...+|. +.++.+..- ..-.++.+..+.+
T Consensus 67 ~~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~ 145 (350)
T CHL00081 67 VVKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANR 145 (350)
T ss_pred ccCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCC
Confidence 2332 0000 00 01112221 111111100 0112556778889
Q ss_pred CEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHH
Q 005663 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 397 gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i 476 (684)
|+||||||+.+.+. +|+.|++.|+...+.+...|.. .... ..+++|+|.|..
T Consensus 146 GiL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G~s-------~~~p-~rfiviaT~np~------ 197 (350)
T CHL00081 146 GILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREGIS-------IRHP-ARFVLVGSGNPE------ 197 (350)
T ss_pred CEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCCee-------eecC-CCEEEEeccCcc------
Confidence 99999999999998 9999999998544443222211 1222 256666665521
Q ss_pred HhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccC-HHHHHHHHhchHH-
Q 005663 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKN- 554 (684)
Q Consensus 477 ~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs-~eel~~Il~~~l~- 554 (684)
+..|+++|+.||...+.+..++ .++..+|++....
T Consensus 198 -------------------------------------------eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~ 234 (350)
T CHL00081 198 -------------------------------------------EGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSF 234 (350)
T ss_pred -------------------------------------------cCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhcc
Confidence 1137899999999999998887 4777777765321
Q ss_pred -----HHHHHH--------HHH--HhhCCceeecCHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHhc
Q 005663 555 -----ALGKQY--------RKM--FQMNGVKLHFTENALRLIAKKAISKN-TGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 555 -----~L~kqy--------~~~--~~~~gv~l~iteeAl~~La~~a~~~~-~GAR~Lr~iIe~~l~~al~e 609 (684)
.+.++| .+. ....-..+.++++.+++|++.+...+ -|-|.-..+++..-..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 235 DKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred ccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc
Confidence 011111 111 11112357799999999998765433 36677777776655555443
No 117
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.47 E-value=1.6e-12 Score=135.82 Aligned_cols=156 Identities=18% Similarity=0.260 Sum_probs=102.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc-cCCccc----cchHHHHHHHH--------------hcccchH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-QAGYVG----EDVESILYKLL--------------TVSDYNV 391 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~-~sgyvG----~~~~~~l~~l~--------------~~a~~~v 391 (684)
.++||.||||||||++|+++|+.++.+++.++|..-. .+.++| +.....+.... ...+...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 6899999999999999999999999999999987432 222333 21111111110 0111112
Q ss_pred HhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcC
Q 005663 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (684)
Q Consensus 392 ~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~d 471 (684)
....+++|+||||+++.++ +|+.|+.+||++.+.+|+.+.. ++.+. ...++.+|+|+|...
T Consensus 102 A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~----~~~i~-~~~~frvIaTsN~~~ 162 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGT----SRYVD-VHPEFRVIFTSNPVE 162 (262)
T ss_pred HHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCC----CceEe-cCCCCEEEEeeCCcc
Confidence 2356789999999999888 9999999999777776543211 11111 224566777877321
Q ss_pred HHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhc
Q 005663 472 IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 472 Lek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
- . | .+.+.+.|++|+ ..+.+..++.++..+|+..
T Consensus 163 ~-----~-------g---------------------------------~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 163 Y-----A-------G---------------------------------VHETQDALLDRL-ITIFMDYPDIDTETAILRA 196 (262)
T ss_pred c-----c-------c---------------------------------eecccHHHHhhc-EEEECCCCCHHHHHHHHHH
Confidence 0 0 0 012357788998 4678888888888888875
No 118
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=1.4e-12 Score=139.16 Aligned_cols=191 Identities=25% Similarity=0.346 Sum_probs=122.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~--- 355 (684)
++|++.+++.|..++... ...++||+||||||||++|+++++.+.
T Consensus 17 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSP--------------------------------NLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred hcCCHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 689999999998877400 014799999999999999999999883
Q ss_pred --CCEEEEeccccccCC--c----------ccc------chHHHHHHHHhcccch-HHhhcCCEEEEccccccchhhccc
Q 005663 356 --VPFVIADATTLTQAG--Y----------VGE------DVESILYKLLTVSDYN-VAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 356 --~pfv~v~~s~l~~sg--y----------vG~------~~~~~l~~l~~~a~~~-v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
.+++.+++.++.... + .+. .....++.+....... .......+|+|||+|.+...
T Consensus 65 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---- 140 (337)
T PRK12402 65 WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---- 140 (337)
T ss_pred cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH----
Confidence 357788887653110 0 011 0012222222111000 00134579999999998765
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.++.|+++|+.. ..+..||++++...
T Consensus 141 ----------~~~~L~~~le~~---------------------~~~~~~Il~~~~~~----------------------- 166 (337)
T PRK12402 141 ----------AQQALRRIMEQY---------------------SRTCRFIIATRQPS----------------------- 166 (337)
T ss_pred ----------HHHHHHHHHHhc---------------------cCCCeEEEEeCChh-----------------------
Confidence 788999999821 01133444443100
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.|.+|. ..+.|.+++.+++.+++...+ ... .+.++
T Consensus 167 ---------------------------~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~-----------~~~--~~~~~ 205 (337)
T PRK12402 167 ---------------------------KLIPPIRSRC-LPLFFRAPTDDELVDVLESIA-----------EAE--GVDYD 205 (337)
T ss_pred ---------------------------hCchhhcCCc-eEEEecCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 1235566776 468999999999988887521 222 45599
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ +++.|.+.+.++.+.
T Consensus 206 ~~al~~l~~~~---~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 206 DDGLELIAYYA---GGDLRKAILTLQTAA 231 (337)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999964 556788877777544
No 119
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.46 E-value=5.4e-13 Score=143.57 Aligned_cols=130 Identities=33% Similarity=0.452 Sum_probs=98.2
Q ss_pred ChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHH
Q 005663 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (684)
Q Consensus 267 ~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~L 346 (684)
....+...+.+.++|+++++..+..++. -..++||.||||||||++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~----------------------------------~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL----------------------------------AGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH----------------------------------cCCCEEEECCCCccHHHH
Confidence 3445777788889999999998888774 027999999999999999
Q ss_pred HHHHHHHhCCCEEEEecc-ccccCCccccchHHHH---HHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCch
Q 005663 347 AKTLARYVNVPFVIADAT-TLTQAGYVGEDVESIL---YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 347 AkaLA~~l~~pfv~v~~s-~l~~sgyvG~~~~~~l---~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~ 422 (684)
|+++|+.++.+|++++|+ ++.+...+|....... ...+.-.++.+-.+..+|+|+|||++..++
T Consensus 60 a~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------ 127 (329)
T COG0714 60 ARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------ 127 (329)
T ss_pred HHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH------------
Confidence 999999999999999998 5555566665433222 111222223333333369999999999988
Q ss_pred HHHHHHHHHHHhcceeeecCCC
Q 005663 423 EGVQQALLKMLEGTVVNVPEKG 444 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G 444 (684)
+|++||.+|+++.+++++.+
T Consensus 128 --~q~aLl~~l~e~~vtv~~~~ 147 (329)
T COG0714 128 --VQNALLEALEERQVTVPGLT 147 (329)
T ss_pred --HHHHHHHHHhCcEEEECCcC
Confidence 99999999999888875544
No 120
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=8.2e-13 Score=152.35 Aligned_cols=185 Identities=24% Similarity=0.327 Sum_probs=123.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
||||+.+++.|..++.... -+..+||+||+|||||++|+++|+.++..
T Consensus 18 viGQe~vv~~L~~~l~~~r-------------------------------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~ 66 (618)
T PRK14951 18 MVGQEHVVQALTNALTQQR-------------------------------LHHAYLFTGTRGVGKTTVSRILAKSLNCQG 66 (618)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 6899999999998885110 12567999999999999999999998641
Q ss_pred ----------------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccch
Q 005663 358 ----------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 358 ----------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~ 409 (684)
++.+|++ ...|. ..+++++....+........|++|||+|.|..
T Consensus 67 ~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa-----s~~~V---d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 67 PDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA-----SNRGV---DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN 138 (618)
T ss_pred cccccCCCCCCCCccHHHHHHHcCCCCceeecCcc-----cccCH---HHHHHHHHHHHhCcccCCceEEEEEChhhCCH
Confidence 2222221 11222 23444444322221223457999999999988
Q ss_pred hhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCc
Q 005663 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~ 489 (684)
. .++.||+.||. ...+++||++++.. .
T Consensus 139 ~--------------a~NaLLKtLEE---------------------PP~~~~fIL~Ttd~--~---------------- 165 (618)
T PRK14951 139 T--------------AFNAMLKTLEE---------------------PPEYLKFVLATTDP--Q---------------- 165 (618)
T ss_pred H--------------HHHHHHHhccc---------------------CCCCeEEEEEECCc--h----------------
Confidence 7 89999999982 11235566654310 0
Q ss_pred ccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCc
Q 005663 490 PVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 490 ~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv 569 (684)
.+.+.+++|. .++.|.+++.+++.+.+...+ ...
T Consensus 166 --------------------------------kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~-----------~~e-- 199 (618)
T PRK14951 166 --------------------------------KVPVTVLSRC-LQFNLRPMAPETVLEHLTQVL-----------AAE-- 199 (618)
T ss_pred --------------------------------hhhHHHHHhc-eeeecCCCCHHHHHHHHHHHH-----------HHc--
Confidence 1234566776 379999999999888876521 222
Q ss_pred eeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 570 ~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.+.++++++++|++.+ +++.|.+.+++++++.
T Consensus 200 gi~ie~~AL~~La~~s---~GslR~al~lLdq~ia 231 (618)
T PRK14951 200 NVPAEPQALRLLARAA---RGSMRDALSLTDQAIA 231 (618)
T ss_pred CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 5678999999999963 3557888887766553
No 121
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.5e-12 Score=149.57 Aligned_cols=186 Identities=27% Similarity=0.354 Sum_probs=127.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~- 356 (684)
.|+||+++++.|..++... ..++.+||+||+|||||++|+.+|+.++.
T Consensus 17 ~viGq~~v~~~L~~~i~~~-------------------------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQG-------------------------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred hccCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3799999999999888510 01256899999999999999999998853
Q ss_pred -----------------------CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcc
Q 005663 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 357 -----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~ 413 (684)
.++.++++. ..|. ..++++..........+...|++|||+|+|...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas-----~~~v---d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--- 134 (559)
T PRK05563 66 NPPDGEPCNECEICKAITNGSLMDVIEIDAAS-----NNGV---DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--- 134 (559)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeEEeeccc-----cCCH---HHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---
Confidence 233333321 1122 234444433322222356679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccc
Q 005663 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~ 493 (684)
.+++||+.||. ...+++||++++..
T Consensus 135 -----------a~naLLKtLEe---------------------pp~~~ifIlatt~~----------------------- 159 (559)
T PRK05563 135 -----------AFNALLKTLEE---------------------PPAHVIFILATTEP----------------------- 159 (559)
T ss_pred -----------HHHHHHHHhcC---------------------CCCCeEEEEEeCCh-----------------------
Confidence 89999999982 12246777765411
Q ss_pred ccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeec
Q 005663 494 NMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~i 573 (684)
..+.+.+++|.. .+.|.+++.+++.+.+...+ +.. .+.+
T Consensus 160 ---------------------------~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~-----------~~e--gi~i 198 (559)
T PRK05563 160 ---------------------------HKIPATILSRCQ-RFDFKRISVEDIVERLKYIL-----------DKE--GIEY 198 (559)
T ss_pred ---------------------------hhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 024467778876 68899999999888876522 112 5668
Q ss_pred CHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 teeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++..|+..+ +++.|...+.+++++.
T Consensus 199 ~~~al~~ia~~s---~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 199 EDEALRLIARAA---EGGMRDALSILDQAIS 226 (559)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999963 3567888888887654
No 122
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2e-12 Score=146.62 Aligned_cols=185 Identities=27% Similarity=0.318 Sum_probs=123.7
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+++++.|..++... + .++.+||+||||||||++|+++|+.+...
T Consensus 16 vvGq~~v~~~L~~~i~~~------------~-------------------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQG------------R-------------------LGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hcChHHHHHHHHHHHHcC------------C-------------------CCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 799999999999888510 0 12456999999999999999999988531
Q ss_pred ----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccc
Q 005663 358 ----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 358 ----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~ 415 (684)
++.++.+ +..+. ..++++..............||+|||+|.+...
T Consensus 65 ~~~~~cg~C~sc~~i~~~~h~dv~el~~~-----~~~~v---d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~----- 131 (504)
T PRK14963 65 EDPKPCGECESCLAVRRGAHPDVLEIDAA-----SNNSV---EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS----- 131 (504)
T ss_pred CCCCCCCcChhhHHHhcCCCCceEEeccc-----ccCCH---HHHHHHHHHHhhccccCCCeEEEEECccccCHH-----
Confidence 3333332 11121 223333222111111245679999999998765
Q ss_pred cCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccccc
Q 005663 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~ 495 (684)
.++.|++.|+. ...+++||++++..
T Consensus 132 ---------a~naLLk~LEe---------------------p~~~t~~Il~t~~~------------------------- 156 (504)
T PRK14963 132 ---------AFNALLKTLEE---------------------PPEHVIFILATTEP------------------------- 156 (504)
T ss_pred ---------HHHHHHHHHHh---------------------CCCCEEEEEEcCCh-------------------------
Confidence 89999999982 11235555554310
Q ss_pred ccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCH
Q 005663 496 RAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ite 575 (684)
..+.+.+.+|.. ++.|.+++.+++...+... +... .+.+++
T Consensus 157 -------------------------~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i-----------~~~e--gi~i~~ 197 (504)
T PRK14963 157 -------------------------EKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRL-----------LEAE--GREAEP 197 (504)
T ss_pred -------------------------hhCChHHhcceE-EEEecCCCHHHHHHHHHHH-----------HHHc--CCCCCH
Confidence 023466677765 7999999999998888652 2222 456799
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 576 NALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++|++.+ ++..|.+.+.+++++.
T Consensus 198 ~Al~~ia~~s---~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 198 EALQLVARLA---DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 9999999974 4567999999988754
No 123
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.45 E-value=2e-12 Score=130.52 Aligned_cols=163 Identities=19% Similarity=0.290 Sum_probs=109.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
.+++|+||+|||||++|+++++.+ +.+++.++|..+... ....+... ....+|+|||+|.+
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~------~~~~lLvIDdi~~l 102 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA----------DPEVLEGL------EQADLVCLDDVEAI 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh----------HHHHHhhc------ccCCEEEEeChhhh
Confidence 789999999999999999999877 467888999877521 01111111 12369999999998
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
..... .+..|..+++... + .+..+|++++..- .
T Consensus 103 ~~~~~------------~~~~L~~~l~~~~-------------------~-~~~~iIits~~~~-~-------------- 135 (226)
T TIGR03420 103 AGQPE------------WQEALFHLYNRVR-------------------E-AGGRLLIAGRAAP-A-------------- 135 (226)
T ss_pred cCChH------------HHHHHHHHHHHHH-------------------H-cCCeEEEECCCCh-H--------------
Confidence 76410 3777887776210 0 0113444544110 0
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCC-Chhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHHH
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGL-IPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f-~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~ 564 (684)
.... .+.|.+|+. ..+.+++++.+++..++....
T Consensus 136 --------------------------------~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~----------- 172 (226)
T TIGR03420 136 --------------------------------QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA----------- 172 (226)
T ss_pred --------------------------------HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH-----------
Confidence 0011 266777874 689999999999988875421
Q ss_pred hhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 565 QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 565 ~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
... .+.++++++++|++. |+++.|+|+++|+++-.
T Consensus 173 ~~~--~~~~~~~~l~~L~~~---~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 173 ARR--GLQLPDEVADYLLRH---GSRDMGSLMALLDALDR 207 (226)
T ss_pred HHc--CCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHH
Confidence 111 467999999999993 67777999999998654
No 124
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.5e-12 Score=150.07 Aligned_cols=185 Identities=24% Similarity=0.304 Sum_probs=124.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+++++.|..++... ..++.+||+||+|+|||++|+++|+.++..
T Consensus 18 iiGq~~v~~~L~~~i~~~-------------------------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~ 66 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDTG-------------------------------RVAHAFLFTGARGVGKTSTARILAKALNCEQ 66 (576)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCC
Confidence 799999999999888510 012567999999999999999999998532
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.+++. +..|.+ .++++..........+...|++|||+|+|...
T Consensus 67 ~~~~~~c~~c~~c~~i~~g~~~d~~eid~~-----s~~~v~---~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~---- 134 (576)
T PRK14965 67 GLTAEPCNVCPPCVEITEGRSVDVFEIDGA-----SNTGVD---DIRELRENVKYLPSRSRYKIFIIDEVHMLSTN---- 134 (576)
T ss_pred CCCCCCCCccHHHHHHhcCCCCCeeeeecc-----CccCHH---HHHHHHHHHHhccccCCceEEEEEChhhCCHH----
Confidence 2233321 112222 23444333222112345679999999999877
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++. ..
T Consensus 135 ----------a~naLLk~LEe---------------------pp~~~~fIl~t~~--~~--------------------- 160 (576)
T PRK14965 135 ----------AFNALLKTLEE---------------------PPPHVKFIFATTE--PH--------------------- 160 (576)
T ss_pred ----------HHHHHHHHHHc---------------------CCCCeEEEEEeCC--hh---------------------
Confidence 89999999992 1234666666541 11
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+++|.. .+.|.+++.+++...+...+ +.. .+.++
T Consensus 161 ---------------------------kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~-----------~~e--gi~i~ 199 (576)
T PRK14965 161 ---------------------------KVPITILSRCQ-RFDFRRIPLQKIVDRLRYIA-----------DQE--GISIS 199 (576)
T ss_pred ---------------------------hhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHH-----------HHh--CCCCC
Confidence 13355666765 78999999999887775421 112 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++..|++.+ +++.|.+.+.+++++.
T Consensus 200 ~~al~~la~~a---~G~lr~al~~Ldqlia 226 (576)
T PRK14965 200 DAALALVARKG---DGSMRDSLSTLDQVLA 226 (576)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999974 3557888888877654
No 125
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.4e-12 Score=148.70 Aligned_cols=185 Identities=25% Similarity=0.353 Sum_probs=123.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.+..++.... .++.+||+||+|+|||++|+++|+.++..
T Consensus 18 ivGq~~v~~~L~~~i~~~~-------------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 66 (527)
T PRK14969 18 LVGQEHVVRALTNALEQQR-------------------------------LHHAYLFTGTRGVGKTTLARILAKSLNCET 66 (527)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCEEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 7999999999998885100 12567999999999999999999998642
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.++++ ...+ -..+++++.............|++|||+|++...
T Consensus 67 ~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~-----~~~~---vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~---- 134 (527)
T PRK14969 67 GVTATPCGVCSACLEIDSGRFVDLIEVDAA-----SNTQ---VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS---- 134 (527)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCceeEeecc-----ccCC---HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH----
Confidence 1222221 1112 1234444443322222345679999999999877
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++...
T Consensus 135 ----------a~naLLK~LEe---------------------pp~~~~fIL~t~d~~----------------------- 160 (527)
T PRK14969 135 ----------AFNAMLKTLEE---------------------PPEHVKFILATTDPQ----------------------- 160 (527)
T ss_pred ----------HHHHHHHHHhC---------------------CCCCEEEEEEeCChh-----------------------
Confidence 89999999992 112356666554110
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+++|.- ++.|.+++.+++.+.+... ++.. .+.++
T Consensus 161 ---------------------------kil~tI~SRc~-~~~f~~l~~~~i~~~L~~i-----------l~~e--gi~~~ 199 (527)
T PRK14969 161 ---------------------------KIPVTVLSRCL-QFNLKQMPPPLIVSHLQHI-----------LEQE--NIPFD 199 (527)
T ss_pred ---------------------------hCchhHHHHHH-HHhcCCCCHHHHHHHHHHH-----------HHHc--CCCCC
Confidence 12344666663 7899999999988777542 2222 36689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ ++..|...+.+++++.
T Consensus 200 ~~al~~la~~s---~Gslr~al~lldqai~ 226 (527)
T PRK14969 200 ATALQLLARAA---AGSMRDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999963 3457888888887664
No 126
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.43 E-value=2.7e-12 Score=145.33 Aligned_cols=248 Identities=17% Similarity=0.211 Sum_probs=140.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
|+||+.+++.+..++. ...+++|+||||||||++|+.++..+..
T Consensus 194 v~Gq~~~~~al~~aa~----------------------------------~g~~vlliG~pGsGKTtlar~l~~llp~~~ 239 (499)
T TIGR00368 194 IKGQQHAKRALEIAAA----------------------------------GGHNLLLFGPPGSGKTMLASRLQGILPPLT 239 (499)
T ss_pred hcCcHHHHhhhhhhcc----------------------------------CCCEEEEEecCCCCHHHHHHHHhcccCCCC
Confidence 7999999988776652 1278999999999999999999876511
Q ss_pred CEEEEecccccc-CCccc----------------cchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCC
Q 005663 357 PFVIADATTLTQ-AGYVG----------------EDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 357 pfv~v~~s~l~~-sgyvG----------------~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d 419 (684)
.-..++.+.+.. .+... ......+..-....++.+..+.+|||||||++++.+.
T Consensus 240 ~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~--------- 310 (499)
T TIGR00368 240 NEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS--------- 310 (499)
T ss_pred CcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH---------
Confidence 011112111110 00000 0000111000112345677889999999999999887
Q ss_pred CchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcC-cccccccccC
Q 005663 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG-APVRANMRAG 498 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~-~~v~~~~~~~ 498 (684)
+|+.|++.||...+.|...|... .-..++.+|+++|. +..|+- .+...+.+
T Consensus 311 -----~~~~L~~~LE~~~v~i~r~g~~~--------~~pa~frlIaa~Np-------------cpcg~~~~~~~~c~c-- 362 (499)
T TIGR00368 311 -----VLDALREPIEDGSISISRASAKI--------FYPARFQLVAAMNP-------------CPCGHYGGKNTHCRC-- 362 (499)
T ss_pred -----HHHHHHHHHHcCcEEEEecCcce--------eccCCeEEEEecCC-------------cccCcCCCCcccccC--
Confidence 99999999996665543333221 12346777877763 223432 21222211
Q ss_pred CCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHH---------HHhchHHHHHHHHHHHHhhC-C
Q 005663 499 GVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ---------VLTEPKNALGKQYRKMFQMN-G 568 (684)
Q Consensus 499 ~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~---------Il~~~l~~L~kqy~~~~~~~-g 568 (684)
.+....+++. .+..+|++|||..+.+++++.+++.+ |-.+...+-..|. ++++.. +
T Consensus 363 ---~~~~~~~y~~----------~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~-~R~~~~~~ 428 (499)
T TIGR00368 363 ---SPQQISRYWN----------KLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQN-IRYEKFAN 428 (499)
T ss_pred ---CHHHHHHHhh----------hccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHhcCCCC
Confidence 1111122222 46799999999999999988776533 1111111111111 111110 0
Q ss_pred ce-------------eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005663 569 VK-------------LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 569 v~-------------l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+. ..+++++.+.|.+..-..+..+|...+++. +...+.++...
T Consensus 429 ~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArTiAdL~g~ 484 (499)
T TIGR00368 429 INKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VARTIADLKEE 484 (499)
T ss_pred CcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHHHhhcCC
Confidence 01 245777777776654455678999999986 45566666544
No 127
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-12 Score=155.41 Aligned_cols=219 Identities=21% Similarity=0.298 Sum_probs=156.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~--- 355 (684)
|-|.+.++.+|.+.|..+|........ -. .-||.++||+||||||||++|+++|..+.
T Consensus 267 vggl~~~i~~LKEmVl~PLlyPE~f~~--------~~-----------itpPrgvL~~GppGTGkTl~araLa~~~s~~~ 327 (1080)
T KOG0732|consen 267 VGGLENYINQLKEMVLLPLLYPEFFDN--------FN-----------ITPPRGVLFHGPPGTGKTLMARALAAACSRGN 327 (1080)
T ss_pred cccHHHHHHHHHHHHHhHhhhhhHhhh--------cc-----------cCCCcceeecCCCCCchhHHHHhhhhhhcccc
Confidence 789999999999999876664322211 00 11358899999999999999999998882
Q ss_pred --CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHH
Q 005663 356 --VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 356 --~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
..|+.-+.++.. +.|+|+. +.+++.+|+.+. +.++.|||+||||-|++.|.+-. +.....+...||.+|
T Consensus 328 ~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~----k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLm 398 (1080)
T KOG0732|consen 328 RKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQ----KTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALM 398 (1080)
T ss_pred cccchhhhcCchhh-ccccCcH-HHHHHHHHHHHh----ccCceEEeccccccccccccchH---HHhhhhHHHHHHHhc
Confidence 345555555555 7899998 889999998875 36899999999999988764322 222334899999999
Q ss_pred hcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhc
Q 005663 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 434 Eg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v 513 (684)
+|-- .++ .+++|.++|..+
T Consensus 399 dGld-----------sRg--------qVvvigATnRpd------------------------------------------ 417 (1080)
T KOG0732|consen 399 DGLD-----------SRG--------QVVVIGATNRPD------------------------------------------ 417 (1080)
T ss_pred cCCC-----------CCC--------ceEEEcccCCcc------------------------------------------
Confidence 9521 112 255555555221
Q ss_pred cchhHHhcCCChhh--hcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCC
Q 005663 514 KSSDLIAYGLIPEF--VGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG 591 (684)
Q Consensus 514 ~~~dli~~~f~PeL--l~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~G 591 (684)
...|+| .+|||..+.|+-.+.++..+|+...- ..-.-.+....+.+|++. ..+++
T Consensus 418 --------a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Iht-------------rkw~~~i~~~l~~~la~~--t~gy~ 474 (1080)
T KOG0732|consen 418 --------AIDPALRRPGRFDREFYFPLPDVDARAKILDIHT-------------RKWEPPISRELLLWLAEE--TSGYG 474 (1080)
T ss_pred --------ccchhhcCCcccceeEeeeCCchHHHHHHHHHhc-------------cCCCCCCCHHHHHHHHHh--ccccc
Confidence 134666 58999999999999999999887521 111345788889999985 45566
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 005663 592 ARGLRSLLENILMDAMYE 609 (684)
Q Consensus 592 AR~Lr~iIe~~l~~al~e 609 (684)
...|+.+...+.+.++..
T Consensus 475 gaDlkaLCTeAal~~~~r 492 (1080)
T KOG0732|consen 475 GADLKALCTEAALIALRR 492 (1080)
T ss_pred hHHHHHHHHHHhhhhhcc
Confidence 566888887777776653
No 128
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-12 Score=140.87 Aligned_cols=193 Identities=21% Similarity=0.308 Sum_probs=133.6
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~ 408 (684)
|-+|+|||||||||||++|+-||+..|..+......++.+.|--+ -..+.++|.=+ -.+..+-+|||||+|.+.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qa---VTkiH~lFDWa---kkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQA---VTKIHKLFDWA---KKSRRGLLLFIDEADAFL 456 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHH---HHHHHHHHHHH---hhcccceEEEehhhHHHH
Confidence 348999999999999999999999999999999999988654322 23344555322 234456789999999999
Q ss_pred hhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcC
Q 005663 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~ 488 (684)
.+|....++.+ ..++|..+|-. .| + ..+.+++++++|..+
T Consensus 457 ceRnktymSEa-----qRsaLNAlLfR-------TG----d-------qSrdivLvlAtNrpg----------------- 496 (630)
T KOG0742|consen 457 CERNKTYMSEA-----QRSALNALLFR-------TG----D-------QSRDIVLVLATNRPG----------------- 496 (630)
T ss_pred HHhchhhhcHH-----HHHHHHHHHHH-------hc----c-------cccceEEEeccCCcc-----------------
Confidence 99876544433 66666666641 01 0 123477777776321
Q ss_pred cccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHH---------H
Q 005663 489 APVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK---------Q 559 (684)
Q Consensus 489 ~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~k---------q 559 (684)
.|.-..-.|||.+|.|+-+.+||..+++..+++..+. .
T Consensus 497 ---------------------------------dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~ 543 (630)
T KOG0742|consen 497 ---------------------------------DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGK 543 (630)
T ss_pred ---------------------------------chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCch
Confidence 1334455799999999999999999999998877652 2
Q ss_pred HHHHHhhCCceeec----CHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 005663 560 YRKMFQMNGVKLHF----TENALRLIAKKAISKNTGARGLRSLLENI 602 (684)
Q Consensus 560 y~~~~~~~gv~l~i----teeAl~~La~~a~~~~~GAR~Lr~iIe~~ 602 (684)
+..+|+....++.+ ++..+...+++ +.++..|++-.++-..
T Consensus 544 ~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk--TeGfSGREiakLva~v 588 (630)
T KOG0742|consen 544 WSHLFKKESQRIKLAGFDTGRKCSEAAKK--TEGFSGREIAKLVASV 588 (630)
T ss_pred hhHHHhhhhheeeeccchHHHHHHHHHHh--ccCCcHHHHHHHHHHH
Confidence 33444443334544 45566666663 5677789998887653
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.42 E-value=1.3e-12 Score=156.44 Aligned_cols=188 Identities=21% Similarity=0.265 Sum_probs=130.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.|+||++.++.+.+.+.+. .+.+++|+||||||||++|+.+|+.+
T Consensus 188 ~~iGr~~ei~~~i~~l~r~--------------------------------~~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRR--------------------------------RQNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred cccCCHHHHHHHHHHHhcC--------------------------------CcCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 4799999988888776411 12688999999999999999999876
Q ss_pred -------CCCEEEEeccccc-cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHH
Q 005663 355 -------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~v~~s~l~-~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq 426 (684)
+..++.++.+.+. ...|.|+- +..+..++..... ...+.||||||||.+...++. .++.| +-
T Consensus 236 ~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~-~~~~d-----~~ 305 (852)
T TIGR03345 236 DVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQ-AGQGD-----AA 305 (852)
T ss_pred CCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCc-ccccc-----HH
Confidence 2457888887765 24577765 5677777765321 135689999999999876321 11122 44
Q ss_pred HHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhh
Q 005663 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~ 506 (684)
+.|+..|+. ..+.+|.+++..+..+.+
T Consensus 306 n~Lkp~l~~-----------------------G~l~~IgaTT~~e~~~~~------------------------------ 332 (852)
T TIGR03345 306 NLLKPALAR-----------------------GELRTIAATTWAEYKKYF------------------------------ 332 (852)
T ss_pred HHhhHHhhC-----------------------CCeEEEEecCHHHHhhhh------------------------------
Confidence 567777771 125667776632211111
Q ss_pred hhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhc
Q 005663 507 SSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 507 ~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a 585 (684)
...|.|.+||. +|.+.+++.++..+|+.. +.+.|.... .+.++++|+..+++.+
T Consensus 333 ---------------~~d~AL~rRf~-~i~v~eps~~~~~~iL~~----~~~~~e~~~-----~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 333 ---------------EKDPALTRRFQ-VVKVEEPDEETAIRMLRG----LAPVLEKHH-----GVLILDEAVVAAVELS 386 (852)
T ss_pred ---------------hccHHHHHhCe-EEEeCCCCHHHHHHHHHH----HHHhhhhcC-----CCeeCHHHHHHHHHHc
Confidence 13589999996 799999999999999864 444444321 4778999999888864
No 130
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.9e-12 Score=142.93 Aligned_cols=185 Identities=21% Similarity=0.273 Sum_probs=119.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.|..++.+.. -++.+||+||||+|||++|+++|+.+...
T Consensus 18 iiGq~~~~~~L~~~~~~~~-------------------------------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~ 66 (397)
T PRK14955 18 ITAQEHITRTIQNSLRMGR-------------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (397)
T ss_pred ccChHHHHHHHHHHHHhCC-------------------------------cceeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 7999999999888774110 12569999999999999999999998552
Q ss_pred -------------------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccc
Q 005663 358 -------------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 358 -------------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdk 406 (684)
++.++.. +..| -..++.+........-.+...|++|||+|.
T Consensus 67 ~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~-----~~~~---id~Ir~l~~~~~~~p~~~~~kvvIIdea~~ 138 (397)
T PRK14955 67 MIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAA-----SNNS---VDDIRLLRENVRYGPQKGRYRVYIIDEVHM 138 (397)
T ss_pred CcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeeccc-----ccCC---HHHHHHHHHHHhhchhcCCeEEEEEeChhh
Confidence 1111110 1111 123333333221111124567999999999
Q ss_pred cchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCC
Q 005663 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lG 486 (684)
+... .++.|++.||.- ...++||++++ +..
T Consensus 139 l~~~--------------~~~~LLk~LEep---------------------~~~t~~Il~t~--~~~------------- 168 (397)
T PRK14955 139 LSIA--------------AFNAFLKTLEEP---------------------PPHAIFIFATT--ELH------------- 168 (397)
T ss_pred CCHH--------------HHHHHHHHHhcC---------------------CCCeEEEEEeC--ChH-------------
Confidence 9876 789999999820 11244444433 111
Q ss_pred cCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhh
Q 005663 487 FGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (684)
Q Consensus 487 f~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~ 566 (684)
.+.+.+.+|.. ++.|.+++++++.+.+...+. .
T Consensus 169 -----------------------------------kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~-----------~ 201 (397)
T PRK14955 169 -----------------------------------KIPATIASRCQ-RFNFKRIPLEEIQQQLQGICE-----------A 201 (397)
T ss_pred -----------------------------------HhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHH-----------H
Confidence 12244555554 688999999999887765221 1
Q ss_pred CCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 567 NGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 567 ~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
. .+.+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 202 ~--g~~i~~~al~~l~~~s---~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 202 E--GISVDADALQLIGRKA---QGSMRDAQSILDQVIA 234 (397)
T ss_pred c--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 1 5679999999999974 3457888888887653
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.7e-12 Score=148.39 Aligned_cols=189 Identities=24% Similarity=0.336 Sum_probs=125.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+||+.+++.|..++... ..++.+||+||+|+|||++|+++|+.+..+-
T Consensus 20 IiGQe~~v~~L~~aI~~~-------------------------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~ 68 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSN-------------------------------KISHAYLFSGPRGTGKTSVAKIFANALNCSH 68 (725)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccc
Confidence 799999999999988510 0125679999999999999999999885421
Q ss_pred EEE---e---cc-------cc---ccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCch
Q 005663 359 VIA---D---AT-------TL---TQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 359 v~v---~---~s-------~l---~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~ 422 (684)
... . |. ++ ..++..|. ..++.+..........+...|++|||+|.|...
T Consensus 69 ~~~~~~pC~~C~~~~~~~~Dvieidaasn~~v---d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~------------ 133 (725)
T PRK07133 69 KTDLLEPCQECIENVNNSLDIIEMDAASNNGV---DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS------------ 133 (725)
T ss_pred cCCCCCchhHHHHhhcCCCcEEEEeccccCCH---HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH------------
Confidence 000 0 00 00 00111222 224444433322222356679999999999876
Q ss_pred HHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCch
Q 005663 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~ 502 (684)
.+++||+.||. ....++||++++. .+
T Consensus 134 --A~NALLKtLEE---------------------PP~~tifILaTte--~~----------------------------- 159 (725)
T PRK07133 134 --AFNALLKTLEE---------------------PPKHVIFILATTE--VH----------------------------- 159 (725)
T ss_pred --HHHHHHHHhhc---------------------CCCceEEEEEcCC--hh-----------------------------
Confidence 89999999992 1223566665541 10
Q ss_pred hhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHH
Q 005663 503 AVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La 582 (684)
.+.+.+++|+. ++.|.+++.+++.+.+...+ ... .+.+++++++.|+
T Consensus 160 -------------------KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il-----------~ke--gI~id~eAl~~LA 206 (725)
T PRK07133 160 -------------------KIPLTILSRVQ-RFNFRRISEDEIVSRLEFIL-----------EKE--NISYEKNALKLIA 206 (725)
T ss_pred -------------------hhhHHHHhhce-eEEccCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHH
Confidence 23466788886 79999999999988886521 122 4678999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHH
Q 005663 583 KKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 583 ~~a~~~~~GAR~Lr~iIe~~l 603 (684)
..+ +++.|.+.++++++.
T Consensus 207 ~lS---~GslR~AlslLekl~ 224 (725)
T PRK07133 207 KLS---SGSLRDALSIAEQVS 224 (725)
T ss_pred HHc---CCCHHHHHHHHHHHH
Confidence 964 355788888888754
No 132
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.42 E-value=3.9e-12 Score=144.75 Aligned_cols=253 Identities=18% Similarity=0.256 Sum_probs=146.8
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
+.+.+...|+|++.+|+.+.-++...... .. .+ ...-....|+||+|+||||||++|+++
T Consensus 197 l~~si~p~i~G~~~~k~~l~l~l~gg~~~-------~~----~~---------~~~~r~~~~vLL~G~pGtGKs~lar~l 256 (509)
T smart00350 197 LSRSLAPSIYGHEDIKKAILLLLFGGVHK-------NL----PD---------GMKIRGDINILLLGDPGTAKSQLLKYV 256 (509)
T ss_pred HHHhhCccccCcHHHHHHHHHHHhCCCcc-------cc----CC---------CccccccceEEEeCCCChhHHHHHHHH
Confidence 55667778999999999888776411100 00 00 000011269999999999999999999
Q ss_pred HHHhCCC-EEE---EeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHH
Q 005663 351 ARYVNVP-FVI---ADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 351 A~~l~~p-fv~---v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq 426 (684)
++.+... |+. .++..++. ..+. + ....-+....+.+..+.+|+++|||++++.+. .|
T Consensus 257 ~~~~~r~~~~~~~~~~~~~l~~-~~~~-~---~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q 317 (509)
T smart00350 257 EKTAPRAVYTTGKGSSAVGLTA-AVTR-D---PETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DR 317 (509)
T ss_pred HHHcCcceEcCCCCCCcCCccc-cceE-c---cCcceEEecCccEEecCCCEEEEechhhCCHH--------------HH
Confidence 9987543 332 12222321 0000 0 00000111234455678899999999999988 99
Q ss_pred HHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhh
Q 005663 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~ 506 (684)
.+|+++||...++|...|.... . ..++.+|+|+|... ++++..
T Consensus 318 ~~L~e~me~~~i~i~k~G~~~~-------l-~~~~~viAa~NP~~-------g~y~~~---------------------- 360 (509)
T smart00350 318 TAIHEAMEQQTISIAKAGITTT-------L-NARCSVLAAANPIG-------GRYDPK---------------------- 360 (509)
T ss_pred HHHHHHHhcCEEEEEeCCEEEE-------e-cCCcEEEEEeCCCC-------cccCCC----------------------
Confidence 9999999977666543332221 1 23466677766431 111000
Q ss_pred hhhhhhccchhHHhcCCChhhhcccceEEEe-cccCHHHHHHHHhchHH-------------------HHHHHHHHHHhh
Q 005663 507 SSLMETVKSSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQVLTEPKN-------------------ALGKQYRKMFQM 566 (684)
Q Consensus 507 ~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f-~pLs~eel~~Il~~~l~-------------------~L~kqy~~~~~~ 566 (684)
..+.+ ...++|++++|||.++.+ +..+.+.-.+|+.+.++ ..+++|....+
T Consensus 361 ~~~~~--------n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar- 431 (509)
T smart00350 361 LTPEE--------NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAR- 431 (509)
T ss_pred cChhh--------ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHH-
Confidence 00111 124789999999986554 66666665666654221 12344443322
Q ss_pred CCceeecCHHHHHHHHHhcCC-------------CCCChHHHHHHHHHHHHHHHh
Q 005663 567 NGVKLHFTENALRLIAKKAIS-------------KNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 567 ~gv~l~iteeAl~~La~~a~~-------------~~~GAR~Lr~iIe~~l~~al~ 608 (684)
..+...+++++.++|.+.... .+...|.|..+|+-.-..|..
T Consensus 432 ~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l 486 (509)
T smart00350 432 EKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKM 486 (509)
T ss_pred hcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHH
Confidence 223456899999998775221 133578888888754444433
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.42 E-value=6.5e-12 Score=133.60 Aligned_cols=191 Identities=17% Similarity=0.237 Sum_probs=124.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++||+++++.+...+... ..+..+||+||||+|||++|+++++.++.++
T Consensus 23 ~~~~~~~~~~l~~~~~~~-------------------------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 23 CILPAADKETFKSIVKKG-------------------------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred hcCcHHHHHHHHHHHhcC-------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 699999999988887410 0124556699999999999999999998889
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++++ .. +.. ....+.......+. .+.+.||+|||+|.+... ..++.|..+|+..
T Consensus 72 ~~i~~~~-~~---~~~-i~~~l~~~~~~~~~---~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le~~-- 128 (316)
T PHA02544 72 LFVNGSD-CR---IDF-VRNRLTRFASTVSL---TGGGKVIIIDEFDRLGLA-------------DAQRHLRSFMEAY-- 128 (316)
T ss_pred eEeccCc-cc---HHH-HHHHHHHHHHhhcc---cCCCeEEEEECcccccCH-------------HHHHHHHHHHHhc--
Confidence 9898876 21 110 11212222111111 135689999999998322 1678888888821
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
..++.||++++..
T Consensus 129 -------------------~~~~~~Ilt~n~~------------------------------------------------ 141 (316)
T PHA02544 129 -------------------SKNCSFIITANNK------------------------------------------------ 141 (316)
T ss_pred -------------------CCCceEEEEcCCh------------------------------------------------
Confidence 1234566665511
Q ss_pred HhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005663 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 i~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~i 598 (684)
..+.|.+++|+. ++.|+.++.++...++...+..+ ...+... .+.++++++..+++.++ .+.|.+-+.
T Consensus 142 --~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~----~~~~~~~--~~~i~~~al~~l~~~~~---~d~r~~l~~ 209 (316)
T PHA02544 142 --NGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVRC----KGILEAE--GVEVDMKVLAALVKKNF---PDFRRTINE 209 (316)
T ss_pred --hhchHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHH----HHHHHhc--CCCCCHHHHHHHHHhcC---CCHHHHHHH
Confidence 024578888996 68899999999888887643333 3333333 45679999999999644 245666555
Q ss_pred HHHH
Q 005663 599 LENI 602 (684)
Q Consensus 599 Ie~~ 602 (684)
++..
T Consensus 210 l~~~ 213 (316)
T PHA02544 210 LQRY 213 (316)
T ss_pred HHHH
Confidence 6643
No 134
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3.4e-12 Score=146.15 Aligned_cols=184 Identities=27% Similarity=0.376 Sum_probs=123.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
|+||+.+++.+..++... ..++.+||+||+|+|||++|+++|+.+..
T Consensus 18 IIGQe~iv~~L~~aI~~~-------------------------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 18 IIGQELIKKILVNAILNN-------------------------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 799999999999887410 01257899999999999999999999843
Q ss_pred ----------------------CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
.++.++++ +..|-+ .++.+..........+...|++|||+|.|...
T Consensus 67 ~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa-----s~igVd---~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~---- 134 (605)
T PRK05896 67 PKDGDCCNSCSVCESINTNQSVDIVELDAA-----SNNGVD---EIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS---- 134 (605)
T ss_pred CCCCCCCcccHHHHHHHcCCCCceEEeccc-----cccCHH---HHHHHHHHHHhchhhCCcEEEEEechHhCCHH----
Confidence 12222221 112222 23444332222112245679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++. ..
T Consensus 135 ----------A~NaLLKtLEE---------------------Pp~~tvfIL~Tt~--~~--------------------- 160 (605)
T PRK05896 135 ----------AWNALLKTLEE---------------------PPKHVVFIFATTE--FQ--------------------- 160 (605)
T ss_pred ----------HHHHHHHHHHh---------------------CCCcEEEEEECCC--hH---------------------
Confidence 89999999992 1123566665431 00
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+++|.. ++.|.+++.+++...+...+ ... .+.++
T Consensus 161 ---------------------------KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il-----------~ke--gi~Is 199 (605)
T PRK05896 161 ---------------------------KIPLTIISRCQ-RYNFKKLNNSELQELLKSIA-----------KKE--KIKIE 199 (605)
T ss_pred ---------------------------hhhHHHHhhhh-hcccCCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 23466777876 78999999999988776522 112 45689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
++++..|++.+ ++..|.+.+.++.+.
T Consensus 200 ~eal~~La~lS---~GdlR~AlnlLekL~ 225 (605)
T PRK05896 200 DNAIDKIADLA---DGSLRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 99999999964 345788888888754
No 135
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.41 E-value=5.3e-12 Score=136.03 Aligned_cols=185 Identities=27% Similarity=0.396 Sum_probs=120.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
++||+++++.+...+... ..+..+||+||||+|||++|+++++.+..+
T Consensus 16 iig~~~~~~~l~~~~~~~-------------------------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~ 64 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKNG-------------------------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQN 64 (355)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 699999999999888410 012578999999999999999999988432
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.++... ..+ -..++.++.........+...||+|||+|.+...
T Consensus 65 ~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~---- 132 (355)
T TIGR02397 65 GPDGEPCNECESCKEINSGSSLDVIEIDAAS-----NNG---VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS---- 132 (355)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----cCC---HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH----
Confidence 22222211 111 1223344333222112245679999999999766
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.++.|++.||+. ..+++||++++ ++++
T Consensus 133 ----------~~~~Ll~~le~~---------------------~~~~~lIl~~~--~~~~-------------------- 159 (355)
T TIGR02397 133 ----------AFNALLKTLEEP---------------------PEHVVFILATT--EPHK-------------------- 159 (355)
T ss_pred ----------HHHHHHHHHhCC---------------------ccceeEEEEeC--CHHH--------------------
Confidence 899999999821 12355555543 1111
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
+.+.+.+|.. .+.|.+++.+++.+++...+ +.. .+.++
T Consensus 160 ----------------------------l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~-----------~~~--g~~i~ 197 (355)
T TIGR02397 160 ----------------------------IPATILSRCQ-RFDFKRIPLEDIVERLKKIL-----------DKE--GIKIE 197 (355)
T ss_pred ----------------------------HHHHHHhhee-EEEcCCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 2244556764 68999999999988887532 122 45689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++..|++.+ +.+.|.+.+.++++..
T Consensus 198 ~~a~~~l~~~~---~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 198 DEALELIARAA---DGSLRDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHc---CCChHHHHHHHHHHHh
Confidence 99999999863 3456888888877654
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.2e-12 Score=145.71 Aligned_cols=185 Identities=21% Similarity=0.311 Sum_probs=123.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.|..++.+.. .++.+||+||+|+|||++|+++|+.++..
T Consensus 18 iiGqe~iv~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~ 66 (563)
T PRK06647 18 LEGQDFVVETLKHSIESNK-------------------------------IANAYIFSGPRGVGKTSSARAFARCLNCVN 66 (563)
T ss_pred ccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhcccc
Confidence 7999999999998885100 12568999999999999999999998542
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.+++.. -.+ -..++.+..........+...|++|||+|.+...
T Consensus 67 ~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-----~~~---vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~---- 134 (563)
T PRK06647 67 GPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-----NTS---VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS---- 134 (563)
T ss_pred CCCCCCCccchHHHHHHcCCCCCeEEecCcc-----cCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH----
Confidence 12222110 011 1223333322111112346679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++ ++.
T Consensus 135 ----------a~naLLK~LEe---------------------pp~~~vfI~~tt--e~~--------------------- 160 (563)
T PRK06647 135 ----------AFNALLKTIEE---------------------PPPYIVFIFATT--EVH--------------------- 160 (563)
T ss_pred ----------HHHHHHHhhcc---------------------CCCCEEEEEecC--ChH---------------------
Confidence 89999999982 112466776654 111
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+.+|.. ++.|.+++.+++.+.+...+ ... .+.++
T Consensus 161 ---------------------------kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~-----------~~e--gi~id 199 (563)
T PRK06647 161 ---------------------------KLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVC-----------LED--QIKYE 199 (563)
T ss_pred ---------------------------HhHHHHHHhce-EEEecCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 13356777876 68999999999888776421 112 46689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++.+|++.+ ++..|.+.+.+++++.
T Consensus 200 ~eAl~lLa~~s---~GdlR~alslLdklis 226 (563)
T PRK06647 200 DEALKWIAYKS---TGSVRDAYTLFDQVVS 226 (563)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 99999999963 3457888888887653
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=5.1e-12 Score=141.78 Aligned_cols=184 Identities=24% Similarity=0.313 Sum_probs=122.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.|...+... ..+..+||+||||+|||++|+++|+.+...
T Consensus 19 iiGq~~~v~~L~~~i~~~-------------------------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~ 67 (451)
T PRK06305 19 ILGQDAVVAVLKNALRFN-------------------------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQN 67 (451)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCC
Confidence 799999999988888410 012678999999999999999999988432
Q ss_pred ------------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcc
Q 005663 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~ 413 (684)
++.++. ....|.+ .++.+.+........+...||+|||+|.+...
T Consensus 68 ~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g-----~~~~gid---~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--- 136 (451)
T PRK06305 68 PTEDQEPCNQCASCKEISSGTSLDVLEIDG-----ASHRGIE---DIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--- 136 (451)
T ss_pred cccCCCCCcccHHHHHHhcCCCCceEEeec-----cccCCHH---HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH---
Confidence 222221 1122222 22222222221112356789999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccc
Q 005663 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~ 493 (684)
.++.|++.||.. ..+++||++++. ..
T Consensus 137 -----------~~n~LLk~lEep---------------------~~~~~~Il~t~~--~~-------------------- 162 (451)
T PRK06305 137 -----------AFNSLLKTLEEP---------------------PQHVKFFLATTE--IH-------------------- 162 (451)
T ss_pred -----------HHHHHHHHhhcC---------------------CCCceEEEEeCC--hH--------------------
Confidence 899999999920 113455555431 00
Q ss_pred ccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeec
Q 005663 494 NMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~i 573 (684)
.+.+.+.+|.. ++.|.+++++++.+.+...+ +.. .+.+
T Consensus 163 ----------------------------kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~-----------~~e--g~~i 200 (451)
T PRK06305 163 ----------------------------KIPGTILSRCQ-KMHLKRIPEETIIDKLALIA-----------KQE--GIET 200 (451)
T ss_pred ----------------------------hcchHHHHhce-EEeCCCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 23466777876 68999999999988776521 112 5668
Q ss_pred CHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 574 teeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
++++++.|+..+ +++.|.+.+.++.++
T Consensus 201 ~~~al~~L~~~s---~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 201 SREALLPIARAA---QGSLRDAESLYDYVV 227 (451)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999974 345788888888754
No 138
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=2.3e-12 Score=142.04 Aligned_cols=114 Identities=23% Similarity=0.328 Sum_probs=72.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+||+++++.|..++...... .+.. ... .++.+||+||||+|||++|+++|+.+...
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~----------~~~~-----------~~~-l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARAD----------VAAA-----------GSG-MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hccChHHHHHHHHHHHHhcccc----------cccc-----------CCC-CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3799999999999998521110 0000 000 13679999999999999999999987442
Q ss_pred E-----------------------EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 F-----------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 f-----------------------v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
- ..+... ...++. ..++++++........+...|+||||+|++...
T Consensus 64 ~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~----~~~i~i---~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---- 132 (394)
T PRK07940 64 DPDEPGCGECRACRTVLAGTHPDVRVVAPE----GLSIGV---DEVRELVTIAARRPSTGRWRIVVIEDADRLTER---- 132 (394)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCCEEEeccc----cccCCH---HHHHHHHHHHHhCcccCCcEEEEEechhhcCHH----
Confidence 1 111110 011121 234555443322112345679999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHh
Q 005663 415 NISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LE 434 (684)
.+++||+.||
T Consensus 133 ----------aanaLLk~LE 142 (394)
T PRK07940 133 ----------AANALLKAVE 142 (394)
T ss_pred ----------HHHHHHHHhh
Confidence 8899999998
No 139
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.40 E-value=2.8e-12 Score=137.43 Aligned_cols=160 Identities=14% Similarity=0.217 Sum_probs=108.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc-cCCccccchH-----HHHHHHHhcccchHHhhcCCEEEEccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-QAGYVGEDVE-----SILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~-~sgyvG~~~~-----~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.++||.||||||||++|+.+|+.++.++++++++.-. ...++|...- .... .+...+.......+++|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~-~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQIT-EFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCccee-EEecCcchhHHhCCeEEEechh
Confidence 6899999999999999999999999999999998554 3456775421 0000 1111111112245678999999
Q ss_pred cccchhhcccccCCCCchHHHHHHHHHHHh-cceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 405 dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
+.+.++ ++..|+.+|| ++.+.+++.+.... .-.++.+|+|.|..+... ..
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~--------~hp~FrviAT~Np~g~Gd-------~~ 194 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIR--------AHPAFRLFATANTIGLGD-------TT 194 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCceEec--------CCCCeEEEEeeCCCCcCC-------CC
Confidence 999888 9999999999 66777755443221 223577788877432000 00
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhc
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
.+ | .. -+.+.+.+++||-.++.+.-++.++-.+|+..
T Consensus 195 G~-y----~G--------------------------t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 195 GL-Y----HG--------------------------TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred cc-e----ee--------------------------eecCCHHHHhheeeEeeCCCCCHHHHHHHHHh
Confidence 00 0 00 01367889999998888999999888888765
No 140
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=6.5e-12 Score=142.72 Aligned_cols=185 Identities=28% Similarity=0.363 Sum_probs=125.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
|+||+.+++.|..++... .-+..+||+||+|+|||++|+++|+.+..
T Consensus 16 iiGqe~v~~~L~~~I~~g-------------------------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~ 64 (535)
T PRK08451 16 LIGQESVSKTLSLALDNN-------------------------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQ 64 (535)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCC
Confidence 799999999999888410 01256699999999999999999998842
Q ss_pred ----------------------CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
.++.+++++ ..| -..++++..........+...|++|||+|.|...
T Consensus 65 ~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-----~~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~---- 132 (535)
T PRK08451 65 GPSSTPCDTCIQCQSALENRHIDIIEMDAAS-----NRG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE---- 132 (535)
T ss_pred CCCCCCCcccHHHHHHhhcCCCeEEEecccc-----ccC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH----
Confidence 122222211 111 1234444433211111245579999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...++.||++++..
T Consensus 133 ----------A~NALLK~LEE---------------------pp~~t~FIL~ttd~------------------------ 157 (535)
T PRK08451 133 ----------AFNALLKTLEE---------------------PPSYVKFILATTDP------------------------ 157 (535)
T ss_pred ----------HHHHHHHHHhh---------------------cCCceEEEEEECCh------------------------
Confidence 99999999992 12335666655410
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
..+.|.+++|. .++.|.+++.+++.+.+... +... .+.++
T Consensus 158 --------------------------~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~I-----------l~~E--Gi~i~ 197 (535)
T PRK08451 158 --------------------------LKLPATILSRT-QHFRFKQIPQNSIISHLKTI-----------LEKE--GVSYE 197 (535)
T ss_pred --------------------------hhCchHHHhhc-eeEEcCCCCHHHHHHHHHHH-----------HHHc--CCCCC
Confidence 12457788885 48999999999988877642 2223 45689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ ++..|.+.+.+++++.
T Consensus 198 ~~Al~~Ia~~s---~GdlR~alnlLdqai~ 224 (535)
T PRK08451 198 PEALEILARSG---NGSLRDTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHHc---CCcHHHHHHHHHHHHH
Confidence 99999999963 3567888888887664
No 141
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.39 E-value=7.4e-12 Score=127.30 Aligned_cols=160 Identities=16% Similarity=0.233 Sum_probs=110.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
.+++|+||+|||||+||+++++.+ +.+++.+++..+... + .. .....+|+|||+|.+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~----------~----~~------~~~~~~liiDdi~~l 102 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA----------F----DF------DPEAELYAVDDVERL 102 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH----------H----hh------cccCCEEEEeChhhc
Confidence 689999999999999999998876 567888888665310 0 00 123479999999998
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
... .|..|+.+++... .....++|++++...
T Consensus 103 ~~~--------------~~~~L~~~~~~~~-------------------~~~~~~vl~~~~~~~---------------- 133 (227)
T PRK08903 103 DDA--------------QQIALFNLFNRVR-------------------AHGQGALLVAGPAAP---------------- 133 (227)
T ss_pred Cch--------------HHHHHHHHHHHHH-------------------HcCCcEEEEeCCCCH----------------
Confidence 665 7888888886210 011233444443110
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhccc--ceEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
....+.++|++|+ ...+.++++++++...++.+. . .
T Consensus 134 -------------------------------~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~----~-------~ 171 (227)
T PRK08903 134 -------------------------------LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA----A-------A 171 (227)
T ss_pred -------------------------------HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH----H-------H
Confidence 0012457888898 468999999998877766532 1 1
Q ss_pred hCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005663 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
.. .+.++++++++|++. |+.+.|.|+++++.+-..+
T Consensus 172 ~~--~v~l~~~al~~L~~~---~~gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 172 ER--GLQLADEVPDYLLTH---FRRDMPSLMALLDALDRYS 207 (227)
T ss_pred Hc--CCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHHHH
Confidence 12 577999999999993 5666799999999865444
No 142
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=9.8e-12 Score=135.46 Aligned_cols=190 Identities=25% Similarity=0.333 Sum_probs=123.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+||+.+++.+...+.+. ..+.++||+||||+|||++|+++++.+..+.
T Consensus 19 iig~~~~~~~l~~~i~~~-------------------------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~ 67 (367)
T PRK14970 19 VVGQSHITNTLLNAIENN-------------------------------HLAQALLFCGPRGVGKTTCARILARKINQPG 67 (367)
T ss_pred cCCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 699999999998888510 0126899999999999999999999885422
Q ss_pred EEEec-------cccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHH
Q 005663 359 VIADA-------TTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 359 v~v~~-------s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
....+ .++......+ ...++.++..+......+...||+|||+|.+... .++.|++
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~---~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll~ 130 (367)
T PRK14970 68 YDDPNEDFSFNIFELDAASNNS---VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFLK 130 (367)
T ss_pred CCCCCCCCCcceEEeccccCCC---HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHHH
Confidence 11100 0111111111 1234444432211111234579999999998766 7899999
Q ss_pred HHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhh
Q 005663 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~ 511 (684)
.||. ...+.+||++++..
T Consensus 131 ~le~---------------------~~~~~~~Il~~~~~----------------------------------------- 148 (367)
T PRK14970 131 TLEE---------------------PPAHAIFILATTEK----------------------------------------- 148 (367)
T ss_pred HHhC---------------------CCCceEEEEEeCCc-----------------------------------------
Confidence 9982 01224555554310
Q ss_pred hccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCC
Q 005663 512 TVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG 591 (684)
Q Consensus 512 ~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~G 591 (684)
..+.|.+.+|.. ++.|.+++++++..++...+ ... .+.+++++++.|++.+ +++
T Consensus 149 ---------~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~-----------~~~--g~~i~~~al~~l~~~~---~gd 202 (367)
T PRK14970 149 ---------HKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIA-----------VKE--GIKFEDDALHIIAQKA---DGA 202 (367)
T ss_pred ---------ccCCHHHHhcce-eEecCCccHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHhC---CCC
Confidence 124466777775 68999999999888876532 112 5568999999999963 356
Q ss_pred hHHHHHHHHHHHH
Q 005663 592 ARGLRSLLENILM 604 (684)
Q Consensus 592 AR~Lr~iIe~~l~ 604 (684)
.|.+.+.+++++.
T Consensus 203 lr~~~~~lekl~~ 215 (367)
T PRK14970 203 LRDALSIFDRVVT 215 (367)
T ss_pred HHHHHHHHHHHHH
Confidence 7889898888764
No 143
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9.3e-12 Score=144.36 Aligned_cols=183 Identities=25% Similarity=0.381 Sum_probs=122.8
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
++||+.+++.|..++.... -..++||+||+|+|||++|+++|+.++..
T Consensus 18 liGq~~i~~~L~~~l~~~r-------------------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~ 66 (620)
T PRK14948 18 LVGQEAIATTLKNALISNR-------------------------------IAPAYLFTGPRGTGKTSSARILAKSLNCLN 66 (620)
T ss_pred ccChHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCChHHHHHHHHHHhcCCC
Confidence 7999999999998885100 02688999999999999999999998652
Q ss_pred -------------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhc
Q 005663 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 358 -------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~ 412 (684)
++.++.. . ... -..+++++..+......+...|++|||+|+|...
T Consensus 67 ~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~-----~--~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~-- 136 (620)
T PRK14948 67 SDKPTPEPCGKCELCRAIAAGNALDVIEIDAA-----S--NTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA-- 136 (620)
T ss_pred cCCCCCCCCcccHHHHHHhcCCCccEEEEecc-----c--cCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH--
Confidence 1111111 0 111 2345555544332222345679999999999876
Q ss_pred ccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccc
Q 005663 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~ 492 (684)
.+++||+.||. ...+++||++++. .+
T Consensus 137 ------------a~naLLK~LEe---------------------Pp~~tvfIL~t~~--~~------------------- 162 (620)
T PRK14948 137 ------------AFNALLKTLEE---------------------PPPRVVFVLATTD--PQ------------------- 162 (620)
T ss_pred ------------HHHHHHHHHhc---------------------CCcCeEEEEEeCC--hh-------------------
Confidence 89999999992 1123566665441 10
Q ss_pred cccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceee
Q 005663 493 ANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ 572 (684)
.+.|.+++|.. .+.|.+++.+++...+.... ... .+.
T Consensus 163 -----------------------------~llpTIrSRc~-~~~f~~l~~~ei~~~L~~ia-----------~ke--gi~ 199 (620)
T PRK14948 163 -----------------------------RVLPTIISRCQ-RFDFRRIPLEAMVQHLSEIA-----------EKE--SIE 199 (620)
T ss_pred -----------------------------hhhHHHHhhee-EEEecCCCHHHHHHHHHHHH-----------HHh--CCC
Confidence 13466777875 68899999988877665421 111 456
Q ss_pred cCHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 005663 573 FTENALRLIAKKAISKNTGARGLRSLLENI 602 (684)
Q Consensus 573 iteeAl~~La~~a~~~~~GAR~Lr~iIe~~ 602 (684)
++++++..|++.+ +++.|.+.+.++++
T Consensus 200 is~~al~~La~~s---~G~lr~A~~lLekl 226 (620)
T PRK14948 200 IEPEALTLVAQRS---QGGLRDAESLLDQL 226 (620)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 8999999999863 44568888888765
No 144
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.38 E-value=1.4e-11 Score=137.64 Aligned_cols=233 Identities=16% Similarity=0.228 Sum_probs=140.8
Q ss_pred hHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHH
Q 005663 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (684)
Q Consensus 268 ~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LA 347 (684)
...+.+.|.+.|+|++++++.+..++. ...++||.||||||||++|
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal----------------------------------ag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc----------------------------------cCCCEEEECCCChhHHHHH
Confidence 345888999999999999999988874 1279999999999999999
Q ss_pred HHHHHHhCC--CEEEEeccccccCCccccchHHHH--HHHHh-cccchHHhhcCCEEEEccccccchhhcccccCCCCch
Q 005663 348 KTLARYVNV--PFVIADATTLTQAGYVGEDVESIL--YKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 348 kaLA~~l~~--pfv~v~~s~l~~sgyvG~~~~~~l--~~l~~-~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~ 422 (684)
++|++.++. +|....+.-.+.+..+|...-... ...+. ...+.+..+ .+||+|||.+++++
T Consensus 57 raLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A--~lLfLDEI~rasp~------------ 122 (498)
T PRK13531 57 RRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEA--EIVFLDEIWKAGPA------------ 122 (498)
T ss_pred HHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccc--cEEeecccccCCHH------------
Confidence 999998743 555555432123445553200000 01111 111222222 38999999999988
Q ss_pred HHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCch
Q 005663 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~ 502 (684)
+|++||.+|+++.+++ | ++ .....-.++++++| +|.+
T Consensus 123 --~QsaLLeam~Er~~t~---g------~~--~~~lp~rfiv~ATN--~LPE---------------------------- 159 (498)
T PRK13531 123 --ILNTLLTAINERRFRN---G------AH--EEKIPMRLLVTASN--ELPE---------------------------- 159 (498)
T ss_pred --HHHHHHHHHHhCeEec---C------Ce--EEeCCCcEEEEECC--CCcc----------------------------
Confidence 9999999998666653 1 22 22222333444444 2110
Q ss_pred hhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccC-HHHHHHHHhchHHH----------H-HHHHHHHHhhCCce
Q 005663 503 AVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKNA----------L-GKQYRKMFQMNGVK 570 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs-~eel~~Il~~~l~~----------L-~kqy~~~~~~~gv~ 570 (684)
...+.+++++||-..+.+++++ .++..+|+...... + ..++... ...-..
T Consensus 160 -----------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~l-q~~v~~ 221 (498)
T PRK13531 160 -----------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQW-QKEIGK 221 (498)
T ss_pred -----------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHH-HHHhcc
Confidence 1136688999997778889997 45656676531100 0 0112221 111126
Q ss_pred eecCHHHHHHHHHhcC----CC---CCChHHHHHHHHHHHHHHHhc
Q 005663 571 LHFTENALRLIAKKAI----SK---NTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 571 l~iteeAl~~La~~a~----~~---~~GAR~Lr~iIe~~l~~al~e 609 (684)
+.+++.++++|.+..- .. ...-|....++.-+-..|+.+
T Consensus 222 V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~ 267 (498)
T PRK13531 222 ITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFS 267 (498)
T ss_pred eeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHC
Confidence 7889999999877532 11 145577777666554445443
No 145
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.38 E-value=5.1e-12 Score=149.15 Aligned_cols=187 Identities=21% Similarity=0.309 Sum_probs=125.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|.+..++.+.+.+... .+.++||+||||||||.+|+.+|..+
T Consensus 187 ~liGR~~ei~~~i~iL~r~--------------------------------~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc--------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3799999999999888510 12688999999999999999999765
Q ss_pred -------CCCEEEEeccccc-cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHH
Q 005663 355 -------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~v~~s~l~-~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq 426 (684)
+..++.++.+.+. ...|.|+- +..+..++... ....++||||||||.+...+.. ......+.
T Consensus 235 ~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l----~~~~~~ILfIDEIh~L~g~g~~-----~~g~~d~~ 304 (758)
T PRK11034 235 DVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAA-----SGGQVDAA 304 (758)
T ss_pred CCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHH----HhcCCCEEEeccHHHHhccCCC-----CCcHHHHH
Confidence 3345555555443 24466654 55566665432 2346789999999999765321 11122355
Q ss_pred HHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhh
Q 005663 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~ 506 (684)
+.|..+++. ..+.+|.+++..+..+.+
T Consensus 305 nlLkp~L~~-----------------------g~i~vIgATt~~E~~~~~------------------------------ 331 (758)
T PRK11034 305 NLIKPLLSS-----------------------GKIRVIGSTTYQEFSNIF------------------------------ 331 (758)
T ss_pred HHHHHHHhC-----------------------CCeEEEecCChHHHHHHh------------------------------
Confidence 666666651 126677777643322221
Q ss_pred hhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHh
Q 005663 507 SSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 507 ~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~ 584 (684)
...|.|.+||+ .|.+++++.++..+|+.. +...|.... .+.++++|+..+++.
T Consensus 332 ---------------~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~----~~~~ye~~h-----~v~i~~~al~~a~~l 384 (758)
T PRK11034 332 ---------------EKDRALARRFQ-KIDITEPSIEETVQIING----LKPKYEAHH-----DVRYTAKAVRAAVEL 384 (758)
T ss_pred ---------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHH----HHHHhhhcc-----CCCcCHHHHHHHHHH
Confidence 13588899997 799999999999999986 344444422 567899999887765
No 146
>PRK04195 replication factor C large subunit; Provisional
Probab=99.38 E-value=1.4e-11 Score=139.43 Aligned_cols=187 Identities=22% Similarity=0.309 Sum_probs=119.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++|++++++.|...+..+.+ + .++.++||+||||||||++|+++|+.++.++
T Consensus 16 lvg~~~~~~~l~~~l~~~~~------------g----------------~~~~~lLL~GppG~GKTtla~ala~el~~~~ 67 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLK------------G----------------KPKKALLLYGPPGVGKTSLAHALANDYGWEV 67 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhc------------C----------------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 69999999999988852111 0 0137899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccc--hHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcc
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDY--NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~--~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+.+++++... ...+......... .+....+.+|+|||+|.+.... ..+.+++|+++++..
T Consensus 68 ielnasd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~~ 129 (482)
T PRK04195 68 IELNASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKKA 129 (482)
T ss_pred EEEccccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHcC
Confidence 9999976542 1122222211110 0101246799999999987531 112678899998711
Q ss_pred eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccch
Q 005663 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
+..+|+++|...
T Consensus 130 -----------------------~~~iIli~n~~~--------------------------------------------- 141 (482)
T PRK04195 130 -----------------------KQPIILTANDPY--------------------------------------------- 141 (482)
T ss_pred -----------------------CCCEEEeccCcc---------------------------------------------
Confidence 122333433100
Q ss_pred hHHhcCCCh-hhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHH
Q 005663 517 DLIAYGLIP-EFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 517 dli~~~f~P-eLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~L 595 (684)
...+ .+.+|. ..|.|.+++.+++..++...+ ... .+.+++++++.|++.+ ++..|.+
T Consensus 142 -----~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~-----------~~e--gi~i~~eaL~~Ia~~s---~GDlR~a 199 (482)
T PRK04195 142 -----DPSLRELRNAC-LMIEFKRLSTRSIVPVLKRIC-----------RKE--GIECDDEALKEIAERS---GGDLRSA 199 (482)
T ss_pred -----ccchhhHhccc-eEEEecCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHHc---CCCHHHH
Confidence 0112 344444 479999999999888886532 122 4568999999999963 3334554
Q ss_pred HHHHHH
Q 005663 596 RSLLEN 601 (684)
Q Consensus 596 r~iIe~ 601 (684)
-+.++.
T Consensus 200 in~Lq~ 205 (482)
T PRK04195 200 INDLQA 205 (482)
T ss_pred HHHHHH
Confidence 444443
No 147
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1e-11 Score=140.37 Aligned_cols=189 Identities=28% Similarity=0.366 Sum_probs=121.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
++||+.+++.|..++.+. ..++.+||+||+|+|||++|+.+|+.++..
T Consensus 18 iiGq~~i~~~L~~~i~~~-------------------------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~ 66 (486)
T PRK14953 18 VIGQEIVVRILKNAVKLQ-------------------------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLN 66 (486)
T ss_pred ccChHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcC
Confidence 799999999999888510 002457899999999999999999988531
Q ss_pred ------EEE-Eeccccc-----------cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCC
Q 005663 358 ------FVI-ADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 358 ------fv~-v~~s~l~-----------~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d 419 (684)
.-. .+|..+. .+.-.|.+.-..+.+.....+. .+...|++|||+|.+...
T Consensus 67 ~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~---~~~~KVvIIDEad~Lt~~--------- 134 (486)
T PRK14953 67 PQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPI---KGKYKVYIIDEAHMLTKE--------- 134 (486)
T ss_pred CCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcc---cCCeeEEEEEChhhcCHH---------
Confidence 100 1111110 0111222211223333332222 345679999999999876
Q ss_pred CchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCC
Q 005663 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~ 499 (684)
.+++||+.||.- ..+++||++++ ++++
T Consensus 135 -----a~naLLk~LEep---------------------p~~~v~Il~tt--~~~k------------------------- 161 (486)
T PRK14953 135 -----AFNALLKTLEEP---------------------PPRTIFILCTT--EYDK------------------------- 161 (486)
T ss_pred -----HHHHHHHHHhcC---------------------CCCeEEEEEEC--CHHH-------------------------
Confidence 899999999820 11245555443 1111
Q ss_pred CchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHH
Q 005663 500 VTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALR 579 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~ 579 (684)
+.+.+.+|.. .+.|.+++.+++...+... ++.. .+.++++++.
T Consensus 162 -----------------------l~~tI~SRc~-~i~f~~ls~~el~~~L~~i-----------~k~e--gi~id~~al~ 204 (486)
T PRK14953 162 -----------------------IPPTILSRCQ-RFIFSKPTKEQIKEYLKRI-----------CNEE--KIEYEEKALD 204 (486)
T ss_pred -----------------------HHHHHHHhce-EEEcCCCCHHHHHHHHHHH-----------HHHc--CCCCCHHHHH
Confidence 2245566765 6899999999998877652 2222 4578999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHH
Q 005663 580 LIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 580 ~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
.|++.+ +++.|.+.+.++.++
T Consensus 205 ~La~~s---~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 205 LLAQAS---EGGMRDAASLLDQAS 225 (486)
T ss_pred HHHHHc---CCCHHHHHHHHHHHH
Confidence 999863 356788888888775
No 148
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.1e-11 Score=143.07 Aligned_cols=190 Identities=26% Similarity=0.321 Sum_probs=125.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+||+.+++.|..++... ..+..+||+||+|+|||++|+++|+.++...
T Consensus 26 liGq~~~v~~L~~~~~~g-------------------------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 26 LIGQEAMVRTLTNAFETG-------------------------------RIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 799999999999887410 0126799999999999999999999986432
Q ss_pred EEEe-------------cccc-----------ccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 359 VIAD-------------ATTL-----------TQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 359 v~v~-------------~s~l-----------~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
...+ |..+ ...+..|. ..+++++.........+...|++|||+|.+...
T Consensus 75 ~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gv---d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~---- 147 (598)
T PRK09111 75 PDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGV---DDIREIIESVRYRPVSARYKVYIIDEVHMLSTA---- 147 (598)
T ss_pred ccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCH---HHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH----
Confidence 1111 1001 00112232 234444433322222356789999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.+++||+.||. ...+++||++++ +.++
T Consensus 148 ----------a~naLLKtLEe---------------------Pp~~~~fIl~tt--e~~k-------------------- 174 (598)
T PRK09111 148 ----------AFNALLKTLEE---------------------PPPHVKFIFATT--EIRK-------------------- 174 (598)
T ss_pred ----------HHHHHHHHHHh---------------------CCCCeEEEEEeC--Chhh--------------------
Confidence 89999999982 112255555443 1111
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
+.+.+++|.. ++.|.+++++++.+.+...+ +.. .+.++
T Consensus 175 ----------------------------ll~tI~SRcq-~~~f~~l~~~el~~~L~~i~-----------~ke--gi~i~ 212 (598)
T PRK09111 175 ----------------------------VPVTVLSRCQ-RFDLRRIEADVLAAHLSRIA-----------AKE--GVEVE 212 (598)
T ss_pred ----------------------------hhHHHHhhee-EEEecCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 2345667764 79999999999988886522 112 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ ++..|.+.+.+++++.
T Consensus 213 ~eAl~lIa~~a---~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 213 DEALALIARAA---EGSVRDGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 99999999964 4567888888887653
No 149
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.36 E-value=6e-12 Score=145.79 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=94.4
Q ss_pred chHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCC-CceEEeeccEEEEeCC
Q 005663 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG-DNIQIDTKDILFICGG 467 (684)
Q Consensus 389 ~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~-~~i~IdtsNiifI~tg 467 (684)
+.++.+.+|+|||||++.|.+. +|..|+++|+.+.+.+........... +...+ ..++.+|+++
T Consensus 211 G~L~~AngGtL~Ldei~~L~~~--------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~i-p~dvrvIa~~ 275 (608)
T TIGR00764 211 GAIHRAHKGVLYIDEIKTMPLE--------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPV-PCDFILVASG 275 (608)
T ss_pred CceEECCCCEEEEEChHhCCHH--------------HHHHHHHHHHhCcEEecCccccccccccCCCCC-ccceEEEEEC
Confidence 3455778899999999999977 999999999855554322111100000 00011 1246677777
Q ss_pred CCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc---eEEEecc---cC
Q 005663 468 AFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP---VLVSLLA---LT 541 (684)
Q Consensus 468 n~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d---~iI~f~p---Ls 541 (684)
+..+ ...+.|+|+.||+ ..+.|++ .+
T Consensus 276 ~~~~------------------------------------------------l~~l~~~l~~rf~~y~v~v~~~~~~~~~ 307 (608)
T TIGR00764 276 NLDD------------------------------------------------LEGMHPALRSRIRGYGYEVYMKDTMPDT 307 (608)
T ss_pred CHHH------------------------------------------------HhhcCHHHHHHhcCCeEEEEeeccCCCC
Confidence 6210 0136799999999 6666654 35
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcC-------CCCCChHHHHHHHHHHHHHHHhcCCCCc
Q 005663 542 ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI-------SKNTGARGLRSLLENILMDAMYEIPDVR 614 (684)
Q Consensus 542 ~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~-------~~~~GAR~Lr~iIe~~l~~al~e~~~~~ 614 (684)
.+...+++.. +.++ .+..|....++++|++.|.+++. ......|.|.++++..-.-+..+
T Consensus 308 ~e~~~~~~~~----i~~~----~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~----- 374 (608)
T TIGR00764 308 PENRDKLVQF----VAQE----VKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSS----- 374 (608)
T ss_pred HHHHHHHHHH----HHHH----HHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhc-----
Confidence 5565555432 2222 23334345899999999987522 12334577777776652222111
Q ss_pred CCCCcccEEEechhccCcc
Q 005663 615 AGDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 615 ~g~~~i~~v~vdee~v~~~ 633 (684)
....|+.++|...
T Consensus 375 ------~~~~I~~ehV~~A 387 (608)
T TIGR00764 375 ------GKVYVTAEHVLKA 387 (608)
T ss_pred ------CCceecHHHHHHH
Confidence 1346777777653
No 150
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.3e-11 Score=142.69 Aligned_cols=190 Identities=20% Similarity=0.288 Sum_probs=120.8
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+||+.+++.|..++.+.. -++.+||+||+|||||++|+++|+.++..-
T Consensus 18 ivGQe~i~~~L~~~i~~~r-------------------------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~ 66 (620)
T PRK14954 18 ITAQEHITHTIQNSLRMDR-------------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (620)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 7999999999888774100 025699999999999999999999996521
Q ss_pred EE----------Eec------c-----------ccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhh
Q 005663 359 VI----------ADA------T-----------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 359 v~----------v~~------s-----------~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r 411 (684)
-. -.| . .+......+ -..++.+.+........+..-|++|||+|.+...
T Consensus 67 ~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~---vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~- 142 (620)
T PRK14954 67 MIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNS---VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA- 142 (620)
T ss_pred cCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCC---HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-
Confidence 00 000 0 010011111 1233444333211112345679999999999876
Q ss_pred cccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccc
Q 005663 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v 491 (684)
.+++||+.||. ....++||++++ +..
T Consensus 143 -------------a~naLLK~LEe---------------------Pp~~tv~IL~t~--~~~------------------ 168 (620)
T PRK14954 143 -------------AFNAFLKTLEE---------------------PPPHAIFIFATT--ELH------------------ 168 (620)
T ss_pred -------------HHHHHHHHHhC---------------------CCCCeEEEEEeC--Chh------------------
Confidence 89999999992 011244554433 111
Q ss_pred ccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCcee
Q 005663 492 RANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l 571 (684)
.+.+.+.+|.. ++.|.+++.+++...+... +... .+
T Consensus 169 ------------------------------kLl~TI~SRc~-~vef~~l~~~ei~~~L~~i-----------~~~e--gi 204 (620)
T PRK14954 169 ------------------------------KIPATIASRCQ-RFNFKRIPLDEIQSQLQMI-----------CRAE--GI 204 (620)
T ss_pred ------------------------------hhhHHHHhhce-EEecCCCCHHHHHHHHHHH-----------HHHc--CC
Confidence 12345566664 7999999999988776542 1112 46
Q ss_pred ecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 572 HFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 572 ~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.++++++++|++.+ +++.|.+.+.+++++.
T Consensus 205 ~I~~eal~~La~~s---~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 205 QIDADALQLIARKA---QGSMRDAQSILDQVIA 234 (620)
T ss_pred CCCHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 68999999999974 3557888888887653
No 151
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.5e-12 Score=141.68 Aligned_cols=215 Identities=24% Similarity=0.274 Sum_probs=147.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.+.|......++.+.+........... +.+. .++.++|++||||||||.+++++|+..+..
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~----s~g~---------------~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~ 245 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFK----SIGI---------------KPPRGLLLYGPPGTGKTFLVRAVANEYGAF 245 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhh----hcCC---------------CCCCCccccCCCCCChHHHHHHHHHHhCce
Confidence 467888888888888864333211110 0111 134899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhc-CCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcc
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQ-QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~-~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
++.+++.++. .++-|+. ++.++..|+.+.- .+ +.+|||||+|.+.+++..... -..++..+|+.+|+|-
T Consensus 246 ~~~i~~peli-~k~~gEt-e~~LR~~f~~a~k----~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~ 315 (693)
T KOG0730|consen 246 LFLINGPELI-SKFPGET-ESNLRKAFAEALK----FQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGL 315 (693)
T ss_pred eEecccHHHH-Hhcccch-HHHHHHHHHHHhc----cCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhC
Confidence 9999999998 6788888 7889999887653 34 899999999999998654221 1235999999999942
Q ss_pred eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccch
Q 005663 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
. ...++++|.+++..+
T Consensus 316 ~-------------------~~~~vivl~atnrp~--------------------------------------------- 331 (693)
T KOG0730|consen 316 K-------------------PDAKVIVLAATNRPD--------------------------------------------- 331 (693)
T ss_pred c-------------------CcCcEEEEEecCCcc---------------------------------------------
Confidence 1 123455665554221
Q ss_pred hHHhcCCChhhh-cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHH
Q 005663 517 DLIAYGLIPEFV-GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 517 dli~~~f~PeLl-~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~L 595 (684)
.+.|.++ +|||.-+.+.-++..+..+|++..... . .+. ++..+..++.. ..++-...|
T Consensus 332 -----sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~-----------~--~~~-~~~~l~~iA~~--thGyvGaDL 390 (693)
T KOG0730|consen 332 -----SLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKK-----------M--NLL-SDVDLEDIAVS--THGYVGADL 390 (693)
T ss_pred -----ccChhhhcCCCcceeeecCCCchhHHHHHHHHHHh-----------c--CCc-chhhHHHHHHH--ccchhHHHH
Confidence 3457777 699999999999988888888752111 1 222 56667777774 233333456
Q ss_pred HHHHHHHHHHH
Q 005663 596 RSLLENILMDA 606 (684)
Q Consensus 596 r~iIe~~l~~a 606 (684)
..+.......+
T Consensus 391 ~~l~~ea~~~~ 401 (693)
T KOG0730|consen 391 AALCREASLQA 401 (693)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 152
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.36 E-value=3.4e-12 Score=143.70 Aligned_cols=192 Identities=27% Similarity=0.336 Sum_probs=136.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+||+.+++.|..++.+... ...+||.||-|||||++||.+|+.++..
T Consensus 17 evvGQe~v~~~L~nal~~~ri-------------------------------~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI-------------------------------AHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc-------------------------------hhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 369999999999999962111 2678999999999999999999999653
Q ss_pred E-------EEE-ecccc-----------ccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCC
Q 005663 358 F-------VIA-DATTL-----------TQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 358 f-------v~v-~~s~l-----------~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~ 418 (684)
- ..+ .|.++ ..+.-.|-+ .++++.+...+........|++|||+|.|+..
T Consensus 66 ~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVd---diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~-------- 134 (515)
T COG2812 66 NGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVD---DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ-------- 134 (515)
T ss_pred CCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChH---HHHHHHHHhccCCccccceEEEEecHHhhhHH--------
Confidence 1 100 11111 112223332 35555555555445677789999999999988
Q ss_pred CCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccC
Q 005663 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~ 498 (684)
..++||+-||+ ...+++||++++-.
T Consensus 135 ------afNALLKTLEE---------------------PP~hV~FIlATTe~---------------------------- 159 (515)
T COG2812 135 ------AFNALLKTLEE---------------------PPSHVKFILATTEP---------------------------- 159 (515)
T ss_pred ------HHHHHhccccc---------------------CccCeEEEEecCCc----------------------------
Confidence 99999999983 34568999987621
Q ss_pred CCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHH
Q 005663 499 GVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 499 ~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl 578 (684)
. .+++-.++|.. .+.|..++.+++..-+...+ ..+ .+.++++|+
T Consensus 160 ----~------------------Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~-----------~~E--~I~~e~~aL 203 (515)
T COG2812 160 ----Q------------------KIPNTILSRCQ-RFDFKRLDLEEIAKHLAAIL-----------DKE--GINIEEDAL 203 (515)
T ss_pred ----C------------------cCchhhhhccc-cccccCCCHHHHHHHHHHHH-----------Hhc--CCccCHHHH
Confidence 1 24455666665 57899999998877665421 112 788999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005663 579 RLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 579 ~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
..|++.+ .++.|+..+++..++.-
T Consensus 204 ~~ia~~a---~Gs~RDalslLDq~i~~ 227 (515)
T COG2812 204 SLIARAA---EGSLRDALSLLDQAIAF 227 (515)
T ss_pred HHHHHHc---CCChhhHHHHHHHHHHc
Confidence 9999963 66789999999887753
No 153
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.36 E-value=1.7e-11 Score=144.89 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=94.1
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
|...+...|.|++.+|+.+.-++... ..+....+ ..|.+......-....||||+|+||||||.+|+++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG-------~~k~~~~~----~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~I 512 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSG-------NKNSSDFN----KSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYT 512 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcC-------Cccccccc----cccccccccccccCCceEEEeCCCCccHHHHHHHH
Confidence 44455567999999999887766411 11000000 00000000011122379999999999999999999
Q ss_pred HHHhC-------CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchH
Q 005663 351 ARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 351 A~~l~-------~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e 423 (684)
++... .++..++++.... +.+...+ .+....+.+..+.+|+++|||++++...
T Consensus 513 h~lspR~~ytsG~~~s~vgLTa~~~--~~d~~tG-----~~~le~GaLvlAdgGtL~IDEidkms~~------------- 572 (915)
T PTZ00111 513 HLLSPRSIYTSGKSSSSVGLTASIK--FNESDNG-----RAMIQPGAVVLANGGVCCIDELDKCHNE------------- 572 (915)
T ss_pred HHhCCccccCCCCCCccccccchhh--hcccccC-----cccccCCcEEEcCCCeEEecchhhCCHH-------------
Confidence 98653 3444444443221 0110000 0112234456678899999999999988
Q ss_pred HHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCc
Q 005663 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~ 470 (684)
.|.+|+++||...++|...|..... ..++.+|+++|+.
T Consensus 573 -~Q~aLlEaMEqqtIsI~KaGi~~tL--------~ar~rVIAAaNP~ 610 (915)
T PTZ00111 573 -SRLSLYEVMEQQTVTIAKAGIVATL--------KAETAILASCNPI 610 (915)
T ss_pred -HHHHHHHHHhCCEEEEecCCcceec--------CCCeEEEEEcCCc
Confidence 9999999999777666444433322 2346677777753
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.35 E-value=8.5e-12 Score=149.39 Aligned_cols=187 Identities=24% Similarity=0.293 Sum_probs=130.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.|+|.++.++.+.+.+... .+.+++|+||||||||++|+.+|+.+
T Consensus 180 ~~igr~~ei~~~~~~L~r~--------------------------------~~~n~lL~G~pGvGKTal~~~la~~i~~~ 227 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR--------------------------------TKNNPILIGEPGVGKTAIAEGLAQRIVNR 227 (821)
T ss_pred CCCCcHHHHHHHHHHHccc--------------------------------ccCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3799999999999888511 13688999999999999999999887
Q ss_pred -------CCCEEEEeccccc-cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHH
Q 005663 355 -------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~v~~s~l~-~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq 426 (684)
+.+++.+|++.+. ...|.|+- +..+..++.... ...+.||||||||.+...+... ++. .+.
T Consensus 228 ~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~----~~~~~ILfiDEih~l~~~g~~~-g~~-----~~a 296 (821)
T CHL00095 228 DVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQ----ENNNIILVIDEVHTLIGAGAAE-GAI-----DAA 296 (821)
T ss_pred CCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHH----hcCCeEEEEecHHHHhcCCCCC-Ccc-----cHH
Confidence 3679999998764 35688865 667777776542 2356799999999998653221 111 267
Q ss_pred HHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhh
Q 005663 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~ 506 (684)
+.|...|..+ .+.+|.+++.....+.+.
T Consensus 297 ~lLkp~l~rg-----------------------~l~~IgaTt~~ey~~~ie----------------------------- 324 (821)
T CHL00095 297 NILKPALARG-----------------------ELQCIGATTLDEYRKHIE----------------------------- 324 (821)
T ss_pred HHhHHHHhCC-----------------------CcEEEEeCCHHHHHHHHh-----------------------------
Confidence 7777777611 255666666332221111
Q ss_pred hhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhc
Q 005663 507 SSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 507 ~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a 585 (684)
..|.|..||. .|.+..++.++...|++. +..+|.+.+ .+.++++++..+++.+
T Consensus 325 ----------------~D~aL~rRf~-~I~v~ep~~~e~~aILr~----l~~~~e~~~-----~v~i~deal~~i~~ls 377 (821)
T CHL00095 325 ----------------KDPALERRFQ-PVYVGEPSVEETIEILFG----LRSRYEKHH-----NLSISDKALEAAAKLS 377 (821)
T ss_pred ----------------cCHHHHhcce-EEecCCCCHHHHHHHHHH----HHHHHHHHc-----CCCCCHHHHHHHHHHh
Confidence 2478888997 478888999999998875 444444433 3448999999888754
No 155
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.9e-11 Score=141.40 Aligned_cols=185 Identities=24% Similarity=0.320 Sum_probs=119.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+||+.+++.|..++.... -+..+||+||+|+|||++|+++|+.++...
T Consensus 18 iiGq~~~~~~L~~~i~~~~-------------------------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~ 66 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEGR-------------------------------VAHAYLFTGPRGVGKTSTARILAKAVNCTT 66 (585)
T ss_pred hcCCHHHHHHHHHHHHhCC-------------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 7999999999988874110 025679999999999999999999885321
Q ss_pred -------------------------EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcc
Q 005663 359 -------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 359 -------------------------v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~ 413 (684)
+.++.+ ...+. ..++++..........+...||+|||+|.|..+
T Consensus 67 ~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~-----~~~~v---d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~--- 135 (585)
T PRK14950 67 NDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA-----SHTSV---DDAREIIERVQFRPALARYKVYIIDEVHMLSTA--- 135 (585)
T ss_pred CCCCCCCCccCHHHHHHhcCCCCeEEEEecc-----ccCCH---HHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH---
Confidence 111111 11222 223333322111111245679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccc
Q 005663 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~ 493 (684)
.++.||+.||.- ..+++||++++ ++++
T Consensus 136 -----------a~naLLk~LEep---------------------p~~tv~Il~t~--~~~k------------------- 162 (585)
T PRK14950 136 -----------AFNALLKTLEEP---------------------PPHAIFILATT--EVHK------------------- 162 (585)
T ss_pred -----------HHHHHHHHHhcC---------------------CCCeEEEEEeC--Chhh-------------------
Confidence 899999999821 12345555443 1111
Q ss_pred ccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeec
Q 005663 494 NMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~i 573 (684)
+.+.+.+|.. .+.|.+++.+++..++...+ ... .+.+
T Consensus 163 -----------------------------ll~tI~SR~~-~i~f~~l~~~el~~~L~~~a-----------~~e--gl~i 199 (585)
T PRK14950 163 -----------------------------VPATILSRCQ-RFDFHRHSVADMAAHLRKIA-----------AAE--GINL 199 (585)
T ss_pred -----------------------------hhHHHHhccc-eeeCCCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 2244556655 68899999998888776421 122 4568
Q ss_pred CHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 teeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++..|++.+ +++.|.+.+.++++..
T Consensus 200 ~~eal~~La~~s---~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 200 EPGALEAIARAA---TGSMRDAENLLQQLAT 227 (585)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999863 3467888888887643
No 156
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.34 E-value=2.3e-11 Score=128.75 Aligned_cols=185 Identities=23% Similarity=0.329 Sum_probs=118.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
++|++++++.+...+... ...+++|+||||||||++|+++++.+..
T Consensus 19 ~~g~~~~~~~l~~~i~~~--------------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~ 66 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEK--------------------------------NMPHLLFAGPPGTGKTTAALALARELYGED 66 (319)
T ss_pred hcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 589999999998877410 0147899999999999999999988732
Q ss_pred ---CEEEEeccccccCCccccc-hHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHH
Q 005663 357 ---PFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ---pfv~v~~s~l~~sgyvG~~-~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
.++.+++++-. +.+ ....+..+....+. ..+...+|+|||+|.+... .++.|++.
T Consensus 67 ~~~~~i~~~~~~~~-----~~~~~~~~i~~~~~~~~~--~~~~~~vviiDe~~~l~~~--------------~~~~L~~~ 125 (319)
T PRK00440 67 WRENFLELNASDER-----GIDVIRNKIKEFARTAPV--GGAPFKIIFLDEADNLTSD--------------AQQALRRT 125 (319)
T ss_pred cccceEEecccccc-----chHHHHHHHHHHHhcCCC--CCCCceEEEEeCcccCCHH--------------HHHHHHHH
Confidence 34555443321 111 11222222221111 1124569999999999766 78899999
Q ss_pred HhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhh
Q 005663 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~ 512 (684)
++.. ..++.+|++++...
T Consensus 126 le~~---------------------~~~~~lIl~~~~~~----------------------------------------- 143 (319)
T PRK00440 126 MEMY---------------------SQNTRFILSCNYSS----------------------------------------- 143 (319)
T ss_pred HhcC---------------------CCCCeEEEEeCCcc-----------------------------------------
Confidence 9820 01233444443110
Q ss_pred ccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCCh
Q 005663 513 VKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GA 592 (684)
.+.+++.+|.. ++.|.+++.+++..++...+. .. .+.+++++++.|++.+ ++..
T Consensus 144 ---------~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~-----------~~--~~~i~~~al~~l~~~~---~gd~ 197 (319)
T PRK00440 144 ---------KIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAE-----------NE--GIEITDDALEAIYYVS---EGDM 197 (319)
T ss_pred ---------ccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHc---CCCH
Confidence 12345666766 589999999999888775321 12 4568999999999963 3457
Q ss_pred HHHHHHHHHHHH
Q 005663 593 RGLRSLLENILM 604 (684)
Q Consensus 593 R~Lr~iIe~~l~ 604 (684)
|.+.+.++.+..
T Consensus 198 r~~~~~l~~~~~ 209 (319)
T PRK00440 198 RKAINALQAAAA 209 (319)
T ss_pred HHHHHHHHHHHH
Confidence 887777776543
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3.1e-11 Score=139.98 Aligned_cols=185 Identities=24% Similarity=0.310 Sum_probs=124.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~- 356 (684)
.|+||+.+++.|...+.... -+..+||+||+|+|||++|+++|+.++.
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-------------------------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-------------------------------LAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37999999999998885100 1256899999999999999999998852
Q ss_pred ------------------------CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhc
Q 005663 357 ------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 357 ------------------------pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~ 412 (684)
.++.+++.+ ..+ -..++.+...+......+...|++|||+|.|...
T Consensus 67 ~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~-----~~~---vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-- 136 (614)
T PRK14971 67 NLTADGEACNECESCVAFNEQRSYNIHELDAAS-----NNS---VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-- 136 (614)
T ss_pred CCCCCCCCCCcchHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--
Confidence 122222211 111 1234444432221111245679999999999876
Q ss_pred ccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccc
Q 005663 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~ 492 (684)
.+++||+.||. ...+++||++++..
T Consensus 137 ------------a~naLLK~LEe---------------------pp~~tifIL~tt~~---------------------- 161 (614)
T PRK14971 137 ------------AFNAFLKTLEE---------------------PPSYAIFILATTEK---------------------- 161 (614)
T ss_pred ------------HHHHHHHHHhC---------------------CCCCeEEEEEeCCc----------------------
Confidence 89999999992 11235566654310
Q ss_pred cccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceee
Q 005663 493 ANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ 572 (684)
..+.+.+++|.. ++.|.+++.+++...+...+ ... .+.
T Consensus 162 ----------------------------~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~ia-----------~~e--gi~ 199 (614)
T PRK14971 162 ----------------------------HKILPTILSRCQ-IFDFNRIQVADIVNHLQYVA-----------SKE--GIT 199 (614)
T ss_pred ----------------------------hhchHHHHhhhh-eeecCCCCHHHHHHHHHHHH-----------HHc--CCC
Confidence 124467777876 69999999999988776421 122 467
Q ss_pred cCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 573 FTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 573 iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+++++++.|++.+ +++.|.+.+.+++++
T Consensus 200 i~~~al~~La~~s---~gdlr~al~~Lekl~ 227 (614)
T PRK14971 200 AEPEALNVIAQKA---DGGMRDALSIFDQVV 227 (614)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 8999999999974 455788888887754
No 158
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.32 E-value=1.2e-12 Score=122.79 Aligned_cols=122 Identities=25% Similarity=0.371 Sum_probs=73.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
+|||+||||||||++|+.+|+.++.+++.++++..++ ..++|.-.-..-...+...........+++++||||+++.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 5899999999999999999999999999999987543 222222110000000011111112236789999999999877
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCC
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~ 469 (684)
+++.|+.++|+..+.++..+......... ....++.+|+|+|.
T Consensus 81 --------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~ 123 (139)
T PF07728_consen 81 --------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNP 123 (139)
T ss_dssp --------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESS
T ss_pred --------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcC
Confidence 99999999997766655444332221111 12225888888874
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.32 E-value=1.2e-11 Score=148.53 Aligned_cols=165 Identities=21% Similarity=0.271 Sum_probs=114.2
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
|+. |+|+++.++.+.+.+... .+.+++|+||||||||++|+++|..+
T Consensus 177 l~~-vigr~~ei~~~i~iL~r~--------------------------------~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 177 LDP-VIGRDEEIRRTIQVLQRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCc-CCCCHHHHHHHHHHHhcC--------------------------------CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 443 899999988888877511 12688999999999999999999987
Q ss_pred ----------CCCEEEEeccccc-cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchH
Q 005663 355 ----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 355 ----------~~pfv~v~~s~l~-~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e 423 (684)
+.+++.++++.+. ...|.|+- +..+..++.... ....+.||||||||.+...+.+ .++ .
T Consensus 224 ~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~---~~~~~~ILfIDEih~l~~~~~~-~~~-----~ 293 (857)
T PRK10865 224 INGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA-DGA-----M 293 (857)
T ss_pred hcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHH---HcCCCeEEEEecHHHhccCCCC-ccc-----h
Confidence 6788889888764 34577765 566777665421 1124679999999999865321 112 2
Q ss_pred HHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005663 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~ 503 (684)
.+++.|...|+. ..+.+|.+++..+..+.+
T Consensus 294 d~~~~lkp~l~~-----------------------g~l~~IgaTt~~e~r~~~--------------------------- 323 (857)
T PRK10865 294 DAGNMLKPALAR-----------------------GELHCVGATTLDEYRQYI--------------------------- 323 (857)
T ss_pred hHHHHhcchhhc-----------------------CCCeEEEcCCCHHHHHHh---------------------------
Confidence 277888777761 125667777643321111
Q ss_pred hhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhc
Q 005663 504 VVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 504 ~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
...++|.+||+. |.+..++.++...|++.
T Consensus 324 ------------------~~d~al~rRf~~-i~v~eP~~~~~~~iL~~ 352 (857)
T PRK10865 324 ------------------EKDAALERRFQK-VFVAEPSVEDTIAILRG 352 (857)
T ss_pred ------------------hhcHHHHhhCCE-EEeCCCCHHHHHHHHHH
Confidence 135889999985 55666688999888864
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.32 E-value=4.2e-11 Score=123.27 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=53.0
Q ss_pred CChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005663 523 LIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 523 f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe 600 (684)
+.|+|++|+. .++.+.+++.+++.+++.+.. ... .+.++++++++|+++. +..+|.|..+++
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a-----------~~~--~~~l~~~v~~~L~~~~---~~d~r~l~~~l~ 211 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA-----------RLR--GFELPEDVGRFLLKRL---DREMRTLFMTLD 211 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHhh---cCCHHHHHHHHH
Confidence 4589999995 589999999999999986421 112 4789999999999973 455799999999
Q ss_pred HHHHHH
Q 005663 601 NILMDA 606 (684)
Q Consensus 601 ~~l~~a 606 (684)
++-..+
T Consensus 212 ~l~~~~ 217 (235)
T PRK08084 212 QLDRAS 217 (235)
T ss_pred HHHHHH
Confidence 964333
No 161
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.4e-11 Score=136.04 Aligned_cols=184 Identities=23% Similarity=0.354 Sum_probs=113.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~- 356 (684)
.|+||+.||+.+..+.. ..+|+||+||||||||++|+.+...+--
T Consensus 180 DV~GQ~~AKrAleiAAA----------------------------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpl 225 (490)
T COG0606 180 DVKGQEQAKRALEIAAA----------------------------------GGHNLLLVGPPGTGKTMLASRLPGLLPPL 225 (490)
T ss_pred hhcCcHHHHHHHHHHHh----------------------------------cCCcEEEecCCCCchHHhhhhhcccCCCC
Confidence 38999999999998874 1289999999999999999999665510
Q ss_pred ---CEEE------Eecc--c---cc-cCCccccchHHHHHHHH----hcccchHHhhcCCEEEEccccccchhhcccccC
Q 005663 357 ---PFVI------ADAT--T---LT-QAGYVGEDVESILYKLL----TVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 357 ---pfv~------v~~s--~---l~-~sgyvG~~~~~~l~~l~----~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~ 417 (684)
.++. ++.. . +. ..-++--.-......++ ...++.+..+++|||||||.-.+..+
T Consensus 226 s~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~------- 298 (490)
T COG0606 226 SIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS------- 298 (490)
T ss_pred ChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH-------
Confidence 0000 0000 0 00 00000000001111121 22356677899999999999988776
Q ss_pred CCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc-Ccccccccc
Q 005663 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF-GAPVRANMR 496 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf-~~~v~~~~~ 496 (684)
+.+.|.+-||.+.+.|...+ ....-..++.+|++.|. +..|+ +.+.+.+-+
T Consensus 299 -------iLe~LR~PLE~g~i~IsRa~--------~~v~ypa~Fqlv~AmNp-------------cpcG~~~~~~~~C~c 350 (490)
T COG0606 299 -------ILEALREPLENGKIIISRAG--------SKVTYPARFQLVAAMNP-------------CPCGNLGAPLRRCPC 350 (490)
T ss_pred -------HHHHHhCccccCcEEEEEcC--------CeeEEeeeeEEhhhcCC-------------CCccCCCCCCCCcCC
Confidence 99999999996555542211 12344556777777663 44443 444444322
Q ss_pred cCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHH
Q 005663 497 AGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQL 545 (684)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel 545 (684)
.+.....++++ +.-+|+.|||..+..+.++..++
T Consensus 351 -----~~~~~~~Y~~k----------lSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 351 -----SPRQIKRYLNK----------LSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred -----CHHHHHHHHHH----------hhHHHHhhhhheecccCCCHHHh
Confidence 22333444444 45899999999999999885544
No 162
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.29 E-value=4.3e-11 Score=132.30 Aligned_cols=173 Identities=18% Similarity=0.301 Sum_probs=111.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccCCccccc---hHHHHHHHHhcccchHHhhcCCEEEEc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGED---VESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-----~~pfv~v~~s~l~~sgyvG~~---~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
.+++|+||||+|||+|++++++.+ +..++.+++.++.. .+...- ....+.+.+ ....+|+||
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~dlLiiD 206 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEEFKEKY---------RSVDLLLID 206 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHHHHHHH---------HhCCEEEEe
Confidence 578999999999999999999877 45677888776541 111100 000111111 123699999
Q ss_pred cccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhcccc
Q 005663 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 403 EIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~ 482 (684)
||+.+.... ..|..|+.+++... . .+..+|+|++..
T Consensus 207 Di~~l~~~~------------~~~~~l~~~~n~~~-------------------~-~~~~iiits~~~------------ 242 (405)
T TIGR00362 207 DIQFLAGKE------------RTQEEFFHTFNALH-------------------E-NGKQIVLTSDRP------------ 242 (405)
T ss_pred hhhhhcCCH------------HHHHHHHHHHHHHH-------------------H-CCCCEEEecCCC------------
Confidence 999986541 25777887776210 0 011233444311
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHH
Q 005663 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 483 ~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy 560 (684)
|.++ ..+.+.+.+|+. .++.+.+++.+++.+|+...+..
T Consensus 243 --------------------------------p~~l--~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----- 283 (405)
T TIGR00362 243 --------------------------------PKEL--PGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE----- 283 (405)
T ss_pred --------------------------------HHHH--hhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH-----
Confidence 0000 023477888995 48999999999999999863221
Q ss_pred HHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 561 ~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
. .+.++++++++|+++ + ..++|.|+.+|.++...+.
T Consensus 284 ------~--~~~l~~e~l~~ia~~-~--~~~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 284 ------E--GLELPDEVLEFIAKN-I--RSNVRELEGALNRLLAYAS 319 (405)
T ss_pred ------c--CCCCCHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHH
Confidence 1 577899999999986 3 4456999999999876654
No 163
>PRK06893 DNA replication initiation factor; Validated
Probab=99.29 E-value=4.8e-11 Score=122.32 Aligned_cols=165 Identities=16% Similarity=0.238 Sum_probs=104.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
..++|+||||||||+|++++++.+ +.....+++.... . ...+.+... ....+|+||||+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~-------~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---Y-------FSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---h-------hhHHHHhhc------ccCCEEEEeChhhh
Confidence 457899999999999999999876 2333333432211 0 011111111 13369999999998
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
.... ..+..|+.+++.. .+....++|+|++..-
T Consensus 104 ~~~~------------~~~~~l~~l~n~~-------------------~~~~~~illits~~~p---------------- 136 (229)
T PRK06893 104 IGNE------------EWELAIFDLFNRI-------------------KEQGKTLLLISADCSP---------------- 136 (229)
T ss_pred cCCh------------HHHHHHHHHHHHH-------------------HHcCCcEEEEeCCCCh----------------
Confidence 6431 1455677777611 0112234455554210
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
.++ ....|.|.+|+. .++.+.+++.+++.+|+.+...
T Consensus 137 ----------------------------~~l--~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~----------- 175 (229)
T PRK06893 137 ----------------------------HAL--SIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY----------- 175 (229)
T ss_pred ----------------------------HHc--cccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH-----------
Confidence 000 012377888874 5889999999999999976321
Q ss_pred hCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.. .+.++++++++|+++. +...|.|..+++++-.
T Consensus 176 ~~--~l~l~~~v~~~L~~~~---~~d~r~l~~~l~~l~~ 209 (229)
T PRK06893 176 QR--GIELSDEVANFLLKRL---DRDMHTLFDALDLLDK 209 (229)
T ss_pred Hc--CCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHH
Confidence 11 5789999999999972 4557999999998753
No 164
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.27 E-value=1.3e-12 Score=122.29 Aligned_cols=92 Identities=30% Similarity=0.368 Sum_probs=58.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc-ccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT-TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s-~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
|+||.|+||+|||++|+++|+.++..|.++.++ ++..+...|......-...+.-.++.+ -..|+++|||.+.+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPi---f~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPI---FTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChh---hhceeeecccccCCHH
Confidence 689999999999999999999999999999997 566555555432111111111112211 2469999999999999
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeee
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~V 440 (684)
+|++||++|+++.|.+
T Consensus 78 --------------tQsAlLeam~Er~Vt~ 93 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTI 93 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEE
T ss_pred --------------HHHHHHHHHHcCeEEe
Confidence 9999999999777765
No 165
>PHA02244 ATPase-like protein
Probab=99.27 E-value=1.5e-10 Score=125.68 Aligned_cols=184 Identities=17% Similarity=0.191 Sum_probs=106.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.++||+||||||||++|+++|..++.||+.++.. .......|..... ..+...+.......+++|+||||+.+.++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l-~d~~~L~G~i~~~---g~~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI-MDEFELKGFIDAN---GKFHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC-hHHHhhccccccc---ccccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 6899999999999999999999999999999853 1111112210000 00111111112356799999999999988
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcc
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~ 490 (684)
++..|+.++++..+..+ +.. ...-.++.+|+|+|... -|+...
T Consensus 196 --------------vq~~L~~lLd~r~l~l~--g~~--------i~~h~~FRlIATsN~~~-------------~G~~~~ 238 (383)
T PHA02244 196 --------------ALIIINSAIANKFFDFA--DER--------VTAHEDFRVISAGNTLG-------------KGADHI 238 (383)
T ss_pred --------------HHHHHHHHhccCeEEec--CcE--------EecCCCEEEEEeeCCCc-------------cCcccc
Confidence 99999999986555432 111 11224677888877421 011000
Q ss_pred cccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHh--chHHHHHHHHHHHHhhCC
Q 005663 491 VRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT--EPKNALGKQYRKMFQMNG 568 (684)
Q Consensus 491 v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~--~~l~~L~kqy~~~~~~~g 568 (684)
... .+.+.+++++||- +|.|..+++-|. .|+. ..+-.+....+..+...+
T Consensus 239 y~G--------------------------~k~L~~AllDRFv-~I~~dyp~~~E~-~i~~~~~~lv~~a~~lR~~~~~~~ 290 (383)
T PHA02244 239 YVA--------------------------RNKIDGATLDRFA-PIEFDYDEKIEH-LISNGDEDLVNFVALLRHEMAEKG 290 (383)
T ss_pred cCC--------------------------CcccCHHHHhhcE-EeeCCCCcHHHH-HHhhhHHHHHHHHHHHHHHHhcCC
Confidence 000 1246799999996 577776664333 3332 111222233333344455
Q ss_pred ceeecCHHHHHHHHH
Q 005663 569 VKLHFTENALRLIAK 583 (684)
Q Consensus 569 v~l~iteeAl~~La~ 583 (684)
....++..++-+.++
T Consensus 291 l~~~~StR~li~~a~ 305 (383)
T PHA02244 291 LDHVFSMRAIIHGKK 305 (383)
T ss_pred CCccccHHHHHHHHH
Confidence 555666665555555
No 166
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.27 E-value=6.2e-11 Score=120.93 Aligned_cols=172 Identities=19% Similarity=0.347 Sum_probs=105.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccCCcccc---chHHHHHHHHhcccchHHhhcCCEEEEc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGE---DVESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-----~~pfv~v~~s~l~~sgyvG~---~~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
.+++|+||+|+|||.|.+++++.+ +...+.+++.++.. .+... ..-..+..-+. .--+|+||
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~-~~~~~~~~~~~~~~~~~~~---------~~DlL~iD 104 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR-EFADALRDGEIEEFKDRLR---------SADLLIID 104 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH-HHHHHHHTTSHHHHHHHHC---------TSSEEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH-HHHHHHHcccchhhhhhhh---------cCCEEEEe
Confidence 468999999999999999998765 45677788766642 01000 00111112222 23599999
Q ss_pred cccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhcccc
Q 005663 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 403 EIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~ 482 (684)
+++.+.... ..|..|+.+++... .. +-.+|+|+..
T Consensus 105 Di~~l~~~~------------~~q~~lf~l~n~~~-------------------~~-~k~li~ts~~------------- 139 (219)
T PF00308_consen 105 DIQFLAGKQ------------RTQEELFHLFNRLI-------------------ES-GKQLILTSDR------------- 139 (219)
T ss_dssp TGGGGTTHH------------HHHHHHHHHHHHHH-------------------HT-TSEEEEEESS-------------
T ss_pred cchhhcCch------------HHHHHHHHHHHHHH-------------------hh-CCeEEEEeCC-------------
Confidence 999987651 27888888887211 11 1123334321
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHH
Q 005663 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 483 ~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy 560 (684)
.|.++ ..+.|.|.+|+. .++.+.+++.+++.+|+.+...
T Consensus 140 -------------------------------~P~~l--~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~------ 180 (219)
T PF00308_consen 140 -------------------------------PPSEL--SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK------ 180 (219)
T ss_dssp --------------------------------TTTT--TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH------
T ss_pred -------------------------------CCccc--cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH------
Confidence 01111 135688999995 4899999999999999986322
Q ss_pred HHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005663 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 561 ~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
.. .+.++++++++|+++ + ..+.|+|..+|.++...+
T Consensus 181 -----~~--~~~l~~~v~~~l~~~-~--~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 181 -----ER--GIELPEEVIEYLARR-F--RRDVRELEGALNRLDAYA 216 (219)
T ss_dssp -----HT--T--S-HHHHHHHHHH-T--TSSHHHHHHHHHHHHHHH
T ss_pred -----Hh--CCCCcHHHHHHHHHh-h--cCCHHHHHHHHHHHHHHh
Confidence 22 566999999999997 3 446699999999877543
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.26 E-value=4.3e-11 Score=143.84 Aligned_cols=188 Identities=23% Similarity=0.264 Sum_probs=125.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.|+|+++.++.+.+.+.+. .+.+++|+||||||||++|+++|+.+
T Consensus 174 ~~igr~~ei~~~~~~l~r~--------------------------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~ 221 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRIVNG 221 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC--------------------------------CCCceEEEcCCCCCHHHHHHHHHHHHhcc
Confidence 3799999988888877511 12688999999999999999999876
Q ss_pred -------CCCEEEEeccccc-cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHH
Q 005663 355 -------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~v~~s~l~-~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq 426 (684)
+.+++.++++.+. ...|.|+- +..+..++..... ...+.||||||||.+...+.. .+ ...++
T Consensus 222 ~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~g~~-~~-----~~d~~ 291 (852)
T TIGR03346 222 DVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTK---SEGQIILFIDELHTLVGAGKA-EG-----AMDAG 291 (852)
T ss_pred CCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHh---cCCCeEEEeccHHHhhcCCCC-cc-----hhHHH
Confidence 5678888887764 34577754 5666666654311 124689999999999764221 11 11256
Q ss_pred HHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhh
Q 005663 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~ 506 (684)
+.|...++ ...+.+|.+++..+..+.+
T Consensus 292 ~~Lk~~l~-----------------------~g~i~~IgaTt~~e~r~~~------------------------------ 318 (852)
T TIGR03346 292 NMLKPALA-----------------------RGELHCIGATTLDEYRKYI------------------------------ 318 (852)
T ss_pred HHhchhhh-----------------------cCceEEEEeCcHHHHHHHh------------------------------
Confidence 66666555 1236677776632211111
Q ss_pred hhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhc
Q 005663 507 SSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 507 ~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a 585 (684)
...|+|.+||. .|.+..++.++..+|+.. +..+|... ..+.++++++..++..+
T Consensus 319 ---------------~~d~al~rRf~-~i~v~~p~~~~~~~iL~~----~~~~~e~~-----~~v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 319 ---------------EKDAALERRFQ-PVFVDEPTVEDTISILRG----LKERYEVH-----HGVRITDPAIVAAATLS 372 (852)
T ss_pred ---------------hcCHHHHhcCC-EEEeCCCCHHHHHHHHHH----HHHHhccc-----cCCCCCHHHHHHHHHhc
Confidence 14588999997 467888899999998865 33333321 25567888887777643
No 168
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.26 E-value=7.1e-11 Score=136.60 Aligned_cols=206 Identities=19% Similarity=0.221 Sum_probs=128.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEeccccccCCccccc-hHHHH-HHHHhcccchHHhhcCCEEEEccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGED-VESIL-YKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~--~pfv~v~~s~l~~sgyvG~~-~~~~l-~~l~~~a~~~v~~a~~gVLfIDEIdk 406 (684)
.+|||.|+||||||++|+++++.+. .||+.+... .++...+|.- ....+ ...+...++.+..+.+||||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~-~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLG-VTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc-cchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 7999999999999999999999885 469988863 3333444432 11111 11112234556678889999999999
Q ss_pred cchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCC
Q 005663 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lG 486 (684)
+.+. +|+.|+++|+...++|...|.. .. -..++.+|+|.|..+
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~~-------~~-~p~~f~lIAt~np~e--------------- 138 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGIS-------VV-HPAKFALIATYDPAE--------------- 138 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCCc-------ee-ecCceEEEEecCCcc---------------
Confidence 9998 9999999999665554322321 11 123566777655210
Q ss_pred cCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEeccc-CHHHHHHHHhchHHHH---------
Q 005663 487 FGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLAL-TENQLVQVLTEPKNAL--------- 556 (684)
Q Consensus 487 f~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pL-s~eel~~Il~~~l~~L--------- 556 (684)
....|.+.|+.||+..|.+..+ ..++..+|+.......
T Consensus 139 --------------------------------~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~ 186 (589)
T TIGR02031 139 --------------------------------GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELE 186 (589)
T ss_pred --------------------------------ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhH
Confidence 0014789999999987766554 4455667776543211
Q ss_pred -HHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCC-hHHHHHHHHHHHHHH
Q 005663 557 -GKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG-ARGLRSLLENILMDA 606 (684)
Q Consensus 557 -~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~G-AR~Lr~iIe~~l~~a 606 (684)
..+........-..+.++++++++|++.+...+.. .|....+++-.-..+
T Consensus 187 ~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~A 238 (589)
T TIGR02031 187 LLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHA 238 (589)
T ss_pred HHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 11111112222336789999999999987655543 555555554443333
No 169
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=1.2e-10 Score=133.56 Aligned_cols=176 Identities=15% Similarity=0.243 Sum_probs=111.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEId 405 (684)
..++|+|++|+|||+|+++|++.+ +..++.+++.++.. .+...-....... |... .....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al~~~~~~~-f~~~-----y~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSIRDGKGDS-FRRR-----YREMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHhccHHH-HHHH-----hhcCCEEEEehhc
Confidence 458999999999999999999876 34667778776642 1211100011111 1110 1234699999999
Q ss_pred ccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCC
Q 005663 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~l 485 (684)
.+..+. ..+..|+.+++... + .+..+|+|++..
T Consensus 388 ~l~gke------------~tqeeLF~l~N~l~-------------------e-~gk~IIITSd~~--------------- 420 (617)
T PRK14086 388 FLEDKE------------STQEEFFHTFNTLH-------------------N-ANKQIVLSSDRP--------------- 420 (617)
T ss_pred cccCCH------------HHHHHHHHHHHHHH-------------------h-cCCCEEEecCCC---------------
Confidence 986541 25677777776210 0 111123344311
Q ss_pred CcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhccc--ceEEEecccCHHHHHHHHhchHHHHHHHHHHH
Q 005663 486 GFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 486 Gf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
+.++ ..+.+.|.+|| ..++.+.+++.+.+.+|+.+..
T Consensus 421 -----------------------------P~eL--~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka---------- 459 (617)
T PRK14086 421 -----------------------------PKQL--VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA---------- 459 (617)
T ss_pred -----------------------------hHhh--hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH----------
Confidence 0011 12457788899 4588999999999999998632
Q ss_pred HhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 564 ~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
... .+.++++++++|+++ +. .+.|+|+.+|.++...+.
T Consensus 460 -~~r--~l~l~~eVi~yLa~r-~~--rnvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 460 -VQE--QLNAPPEVLEFIASR-IS--RNIRELEGALIRVTAFAS 497 (617)
T ss_pred -Hhc--CCCCCHHHHHHHHHh-cc--CCHHHHHHHHHHHHHHHH
Confidence 111 678999999999997 33 356999999999865443
No 170
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.26 E-value=1.5e-10 Score=125.48 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=126.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~-- 355 (684)
.++|.++.++.|...+..... + ..+.+++++||||||||++++.+++.+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~----~------------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR----G------------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999999999988852111 0 0126899999999999999999987652
Q ss_pred -------CCEEEEeccccccCC---------c---------cccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 356 -------VPFVIADATTLTQAG---------Y---------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 356 -------~pfv~v~~s~l~~sg---------y---------vG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.+++.++|....... + .|.+....+..++... .....+.||+|||+|.+...
T Consensus 68 ~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlvIDE~d~L~~~ 144 (365)
T TIGR02928 68 AEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKEL---NERGDSLIIVLDEIDYLVGD 144 (365)
T ss_pred hhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEECchhhhccC
Confidence 468888987653210 0 0111111122222110 01234568999999999732
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcc
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~ 490 (684)
.. .+...|+++.+-. .....++.+|+.+|..++.
T Consensus 145 ~~-----------~~L~~l~~~~~~~------------------~~~~~~v~lI~i~n~~~~~----------------- 178 (365)
T TIGR02928 145 DD-----------DLLYQLSRARSNG------------------DLDNAKVGVIGISNDLKFR----------------- 178 (365)
T ss_pred Cc-----------HHHHhHhcccccc------------------CCCCCeEEEEEEECCcchH-----------------
Confidence 00 1444444442200 1122456677766532210
Q ss_pred cccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc-eEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCc
Q 005663 491 VRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 491 v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d-~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv 569 (684)
+ .+.+.+.+|+. ..+.|+|++.+++.+|+...+.. .+ .
T Consensus 179 --------------------~----------~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~-------~~----~ 217 (365)
T TIGR02928 179 --------------------E----------NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEK-------AF----Y 217 (365)
T ss_pred --------------------h----------hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHh-------hc----c
Confidence 0 13345556664 57899999999999999864321 01 1
Q ss_pred eeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005663 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 570 ~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
...+++++++++++.+....+.+|....+++.++..+..
T Consensus 218 ~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 218 DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 234889999988876443445678888888877765543
No 171
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=2.3e-10 Score=125.28 Aligned_cols=212 Identities=20% Similarity=0.203 Sum_probs=128.8
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005663 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-- 354 (684)
+.++|.++..+.|...+...... ..+.+++++||||||||++++.+++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~----------------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG----------------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34789999999988888521110 012678999999999999999998877
Q ss_pred ---CCCEEEEeccccccC------------C----ccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccc
Q 005663 355 ---NVPFVIADATTLTQA------------G----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 355 ---~~pfv~v~~s~l~~s------------g----yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~ 415 (684)
+..++.++|...... + ..|......+..+..... ....+.||+|||+|.+.....
T Consensus 82 ~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~viviDE~d~l~~~~~--- 155 (394)
T PRK00411 82 IAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD---ERDRVLIVALDDINYLFEKEG--- 155 (394)
T ss_pred hcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCHhHhhccCC---
Confidence 467899998754310 0 011111122222111100 012346899999999972211
Q ss_pred cCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccccc
Q 005663 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~ 495 (684)
..+...|++.++. ....++.+|+.|+..++..
T Consensus 156 -------~~~l~~l~~~~~~--------------------~~~~~v~vI~i~~~~~~~~--------------------- 187 (394)
T PRK00411 156 -------NDVLYSLLRAHEE--------------------YPGARIGVIGISSDLTFLY--------------------- 187 (394)
T ss_pred -------chHHHHHHHhhhc--------------------cCCCeEEEEEEECCcchhh---------------------
Confidence 1266777776651 1122566777766332111
Q ss_pred ccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc-eEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 496 RAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d-~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.|.+.+|+. ..+.|+|++.+++.+|+...+.. .+. .-.++
T Consensus 188 --------------------------~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~-------~~~----~~~~~ 230 (394)
T PRK00411 188 --------------------------ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE-------GFY----PGVVD 230 (394)
T ss_pred --------------------------hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh-------hcc----cCCCC
Confidence 12344455553 46899999999999999763211 010 23489
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
+++++.+++......+.+|..-.++.+++..+.
T Consensus 231 ~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 231 DEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 999999998754334557777777776665554
No 172
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.3e-10 Score=127.43 Aligned_cols=168 Identities=18% Similarity=0.231 Sum_probs=115.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
++.|||||||||||++.-|+|+.++...+-++.+++.. + ..++.++...+ ..+||+|.+||.....
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~------n--~dLr~LL~~t~------~kSIivIEDIDcs~~l 301 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL------D--SDLRHLLLATP------NKSILLIEDIDCSFDL 301 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC------c--HHHHHHHHhCC------CCcEEEEeeccccccc
Confidence 79999999999999999999999999999888877652 2 23778776654 5699999999987553
Q ss_pred hcccccC--CC--CchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCC
Q 005663 411 AESLNIS--RD--VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 411 r~~~~~~--~d--~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lG 486 (684)
++..... .. ....-..+-||..+||---. ....-|+|||+|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-----------------cg~ERIivFTTNh~E--------------- 349 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-----------------CGDERIIVFTTNHKE--------------- 349 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhhcccccc-----------------CCCceEEEEecCChh---------------
Confidence 3322111 11 11224778899999963211 112357788888543
Q ss_pred cCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHH-----HHHHH
Q 005663 487 FGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKN-----ALGKQ 559 (684)
Q Consensus 487 f~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~-----~L~kq 559 (684)
.+.|+|+. |+|..|.+.-=+.+.++.++..++. .+..+
T Consensus 350 -----------------------------------kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~e 394 (457)
T KOG0743|consen 350 -----------------------------------KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDE 394 (457)
T ss_pred -----------------------------------hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHH
Confidence 35677775 9999999999999999998887652 24444
Q ss_pred HHHHHhhCCceeecCHH-HHHHHHH
Q 005663 560 YRKMFQMNGVKLHFTEN-ALRLIAK 583 (684)
Q Consensus 560 y~~~~~~~gv~l~itee-Al~~La~ 583 (684)
+.+... ...+||+ +.+.|..
T Consensus 395 ie~l~~----~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 395 IERLIE----ETEVTPAQVAEELMK 415 (457)
T ss_pred HHHHhh----cCccCHHHHHHHHhh
Confidence 444221 3456654 3444554
No 173
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.25 E-value=4.9e-11 Score=133.75 Aligned_cols=176 Identities=17% Similarity=0.305 Sum_probs=111.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEId 405 (684)
.+++|+||||||||+|++++++.+ +..++.+++.++.. .+...-.......+... .....+|+||||+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNALRNNTMEEFKEK------YRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHcCcHHHHHHH------HhcCCEEEEehhh
Confidence 568999999999999999999887 34577788876642 11111000001111110 1134699999999
Q ss_pred ccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCC
Q 005663 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~l 485 (684)
.+.... ..|..|+.+++... +....+ |++++..
T Consensus 222 ~l~~~~------------~~~~~l~~~~n~l~-------------------~~~~~i-iits~~~--------------- 254 (450)
T PRK00149 222 FLAGKE------------RTQEEFFHTFNALH-------------------EAGKQI-VLTSDRP--------------- 254 (450)
T ss_pred hhcCCH------------HHHHHHHHHHHHHH-------------------HCCCcE-EEECCCC---------------
Confidence 986541 15677777776210 001122 3343310
Q ss_pred CcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHH
Q 005663 486 GFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 486 Gf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
|.++ .++.+.|.+|+. .++.+.+++.+++.+|++..+..
T Consensus 255 -----------------------------p~~l--~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-------- 295 (450)
T PRK00149 255 -----------------------------PKEL--PGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-------- 295 (450)
T ss_pred -----------------------------HHHH--HHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH--------
Confidence 0000 013477888995 58999999999999999863221
Q ss_pred HhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 564 ~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
..+.++++++++|+++. ...+|.|..+|.++...+.
T Consensus 296 -----~~~~l~~e~l~~ia~~~---~~~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 296 -----EGIDLPDEVLEFIAKNI---TSNVRELEGALNRLIAYAS 331 (450)
T ss_pred -----cCCCCCHHHHHHHHcCc---CCCHHHHHHHHHHHHHHHH
Confidence 15779999999999962 4567999999998876543
No 174
>PRK05642 DNA replication initiation factor; Validated
Probab=99.25 E-value=2.1e-10 Score=118.04 Aligned_cols=168 Identities=20% Similarity=0.278 Sum_probs=109.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
.+++|+||+|||||+|++++++.+ +...+.+++.++... . .. +.+.+.. .-+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-----~-~~-~~~~~~~---------~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-----G-PE-LLDNLEQ---------YELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-----h-HH-HHHhhhh---------CCEEEEechhhh
Confidence 578999999999999999998765 455666777665421 0 11 1111211 248999999987
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
.... ..+..|+.+++.. ..++..+|+|++...
T Consensus 110 ~~~~------------~~~~~Lf~l~n~~--------------------~~~g~~ilits~~~p---------------- 141 (234)
T PRK05642 110 AGKA------------DWEEALFHLFNRL--------------------RDSGRRLLLAASKSP---------------- 141 (234)
T ss_pred cCCh------------HHHHHHHHHHHHH--------------------HhcCCEEEEeCCCCH----------------
Confidence 5431 1567788888621 011122344443110
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
.++ ....|+|++|+. .++.+.+++.+++.+|+.... .
T Consensus 142 ----------------------------~~l--~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka-----------~ 180 (234)
T PRK05642 142 ----------------------------REL--PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-----------S 180 (234)
T ss_pred ----------------------------HHc--CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH-----------H
Confidence 000 023589999994 578899999999999987421 1
Q ss_pred hCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005663 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.. .+.++++++++|+++ ....+|.|..+++++...++.
T Consensus 181 ~~--~~~l~~ev~~~L~~~---~~~d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 181 RR--GLHLTDEVGHFILTR---GTRSMSALFDLLERLDQASLQ 218 (234)
T ss_pred Hc--CCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence 11 477999999999997 345579999999998755543
No 175
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.22 E-value=2.2e-10 Score=133.80 Aligned_cols=205 Identities=15% Similarity=0.209 Sum_probs=128.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccce-EEEEccCCCcHHHHHHHHHHHh--
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vLL~GPpGTGKT~LAkaLA~~l-- 354 (684)
.+.|.++-++.|..++...... -.+.+ ++++|+||||||.+++.+.+.+
T Consensus 756 ~LPhREeEIeeLasfL~paIkg----------------------------sgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQ----------------------------SGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhc----------------------------CCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678888888888877522110 00134 4699999999999999997666
Q ss_pred -----C---CCEEEEeccccccCC---------------ccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhh
Q 005663 355 -----N---VPFVIADATTLTQAG---------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 355 -----~---~pfv~v~~s~l~~sg---------------yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r 411 (684)
+ ..++.+||..+.... ..|......+..++..... ......||+|||||.|...
T Consensus 808 eaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK- 884 (1164)
T PTZ00112 808 KTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITK- 884 (1164)
T ss_pred HHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCcc-
Confidence 1 457899997654210 0111112333344332110 0012358999999999875
Q ss_pred cccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccc
Q 005663 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v 491 (684)
.|+.|+.+++-.. .....+++|+.+|..++-
T Consensus 885 -------------~QDVLYnLFR~~~------------------~s~SKLiLIGISNdlDLp------------------ 915 (1164)
T PTZ00112 885 -------------TQKVLFTLFDWPT------------------KINSKLVLIAISNTMDLP------------------ 915 (1164)
T ss_pred -------------HHHHHHHHHHHhh------------------ccCCeEEEEEecCchhcc------------------
Confidence 5677888877100 012346677666522210
Q ss_pred ccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCce
Q 005663 492 RANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~ 570 (684)
..+.|.+.+|+.. .+.|+||+.+++.+|+...+... .
T Consensus 916 -----------------------------erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A-------------~ 953 (1164)
T PTZ00112 916 -----------------------------ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC-------------K 953 (1164)
T ss_pred -----------------------------hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC-------------C
Confidence 0234566677754 48899999999999998743221 2
Q ss_pred eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
-.++++|++++|+.+....+.||..-.++++++.
T Consensus 954 gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 954 EIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 3599999999999766666778877777776664
No 176
>PRK08727 hypothetical protein; Validated
Probab=99.22 E-value=3.1e-10 Score=116.77 Aligned_cols=168 Identities=20% Similarity=0.271 Sum_probs=106.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
..++|+||+|||||+|+++++..+ +...+.+++.++. ..+...+..- ....+|+||||+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~l------~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----------GRLRDALEAL------EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----------hhHHHHHHHH------hcCCEEEEeCcccc
Confidence 458999999999999999997665 3344445543322 1111222111 12359999999998
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
..... .+..|+.+++... .....+|+|++.. .
T Consensus 106 ~~~~~------------~~~~lf~l~n~~~--------------------~~~~~vI~ts~~~-p--------------- 137 (233)
T PRK08727 106 AGQRE------------DEVALFDFHNRAR--------------------AAGITLLYTARQM-P--------------- 137 (233)
T ss_pred cCChH------------HHHHHHHHHHHHH--------------------HcCCeEEEECCCC-h---------------
Confidence 65411 4567777776210 0112244454410 0
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhccc--ceEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
+++ ..+.|+|.+|+ ..++.|++++.+++.+|+.....
T Consensus 138 ----------------------------~~l--~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~----------- 176 (233)
T PRK08727 138 ----------------------------DGL--ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ----------- 176 (233)
T ss_pred ----------------------------hhh--hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH-----------
Confidence 000 02358888997 55899999999999999985211
Q ss_pred hCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005663 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.. .+.++++++++|++++ +..+|.+.++++.+...++.
T Consensus 177 ~~--~l~l~~e~~~~La~~~---~rd~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 177 RR--GLALDEAAIDWLLTHG---ERELAGLVALLDRLDRESLA 214 (233)
T ss_pred Hc--CCCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHH
Confidence 11 5789999999999973 24578888889987654443
No 177
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.21 E-value=7.8e-11 Score=119.54 Aligned_cols=106 Identities=28% Similarity=0.366 Sum_probs=78.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~- 356 (684)
.|+|.++.+..|...... -.-.|++|.||||||||+-+.++|+++-.
T Consensus 28 dIVGNe~tv~rl~via~~--------------------------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKE--------------------------------GNMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HhhCCHHHHHHHHHHHHc--------------------------------CCCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 379999999999887640 01269999999999999999999998833
Q ss_pred ----CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHH
Q 005663 357 ----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ----pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
.++.+|+++ -.|-++-..--+.|....-.+......||+|||+|.+... .|++|.+.
T Consensus 76 ~~ke~vLELNASd-----eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRt 136 (333)
T KOG0991|consen 76 SYKEAVLELNASD-----ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRT 136 (333)
T ss_pred hhhhHhhhccCcc-----ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHH
Confidence 255666654 3454544444445554443334456789999999999876 99999999
Q ss_pred Hh
Q 005663 433 LE 434 (684)
Q Consensus 433 LE 434 (684)
||
T Consensus 137 ME 138 (333)
T KOG0991|consen 137 ME 138 (333)
T ss_pred HH
Confidence 99
No 178
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.19 E-value=2.7e-10 Score=119.42 Aligned_cols=212 Identities=19% Similarity=0.249 Sum_probs=129.7
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005663 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~ 345 (684)
.+...|+..|++.++||.-|++.|..++..|+.. ..+.+| -.+-|+|+|||||..
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-------------~~p~KP------------LvLSfHG~tGTGKN~ 125 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-------------PNPRKP------------LVLSFHGWTGTGKNY 125 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-------------CCCCCC------------eEEEecCCCCCchhH
Confidence 3356699999999999999999999999755542 112222 566699999999999
Q ss_pred HHHHHHHHhCC-----CEEEEecc--ccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCC
Q 005663 346 LAKTLARYVNV-----PFVIADAT--TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 346 LAkaLA~~l~~-----pfv~v~~s--~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~ 418 (684)
+++.||+.+.. +++..=-+ .+..+.++. ..-.++...-.+.+...+.+++++||+|||++.
T Consensus 126 Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie----~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g-------- 193 (344)
T KOG2170|consen 126 VAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIE----DYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG-------- 193 (344)
T ss_pred HHHHHHHHHHhccccchhHHHhhhhccCCChHHHH----HHHHHHHHHHHHHHHhcCCceEEechhhhcCHh--------
Confidence 99999998832 22211111 111121211 111122222234456778999999999999987
Q ss_pred CCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcC--HH----HHHHhccccCCCCcCcccc
Q 005663 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD--IE----KTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~d--Le----k~i~~r~~~~~lGf~~~v~ 492 (684)
+.++|-..||-. ....-+++++.|||+-+|..+ +. +..+.+..++++++..-..
T Consensus 194 ------Lld~lkpfLdyy--------------p~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~ 253 (344)
T KOG2170|consen 194 ------LLDVLKPFLDYY--------------PQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEP 253 (344)
T ss_pred ------HHHHHhhhhccc--------------cccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhH
Confidence 888888888710 001137889999999777655 22 2234445555555432211
Q ss_pred cccccCCCchhhhhhhhhhhccc---hhHHhcCCChhhhcccceEEEecccCHHHHHHHHhc
Q 005663 493 ANMRAGGVTDAVVTSSLMETVKS---SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~---~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
.++..... .-+....+++ ..++|..|+|.|++...+...++-
T Consensus 254 ---------------~L~~~~~n~~~~Gl~~S~li~--~~lid~fIPFLPLek~hV~~C~r~ 298 (344)
T KOG2170|consen 254 ---------------ALMQSAFNEKAGGLVHSRLIS--NNLIDHFIPFLPLEKRHVRSCIRA 298 (344)
T ss_pred ---------------HHHHhhhccccccccccccch--hhHHhhccCcCcccHHHHHHHHHH
Confidence 11111110 0111112222 367889999999999888887764
No 179
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=1.5e-10 Score=129.76 Aligned_cols=172 Identities=18% Similarity=0.324 Sum_probs=111.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccc---cchHHHHHHHHhcccchHHhhcCCEEEEccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVG---EDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG---~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.+++|+||+|+|||+|++++++.+ +.+++.+++..+.. .+.. ......+...+ ....+|+||||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~l~~~~~~~f~~~~---------~~~dvLiIDDi 211 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSAIRSGEMQRFRQFY---------RNVDALFIEDI 211 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHHHhcchHHHHHHHc---------ccCCEEEEcch
Confidence 578999999999999999999876 56677777765531 1100 00001111111 23469999999
Q ss_pred cccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCC
Q 005663 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 405 dkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~ 484 (684)
+.+.... ..|..|+.+++... + .+..+|+|++..
T Consensus 212 q~l~~k~------------~~qeelf~l~N~l~-------------------~-~~k~IIlts~~~-------------- 245 (445)
T PRK12422 212 EVFSGKG------------ATQEEFFHTFNSLH-------------------T-EGKLIVISSTCA-------------- 245 (445)
T ss_pred hhhcCCh------------hhHHHHHHHHHHHH-------------------H-CCCcEEEecCCC--------------
Confidence 9986541 15777777765210 0 011234444311
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHH
Q 005663 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (684)
Q Consensus 485 lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~ 562 (684)
|.++ ..+.+.|.+|+. .++.+.+++.+++.+|+...+..
T Consensus 246 ------------------------------p~~l--~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~------- 286 (445)
T PRK12422 246 ------------------------------PQDL--KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA------- 286 (445)
T ss_pred ------------------------------HHHH--hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH-------
Confidence 0000 124578888995 78999999999999999763221
Q ss_pred HHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005663 563 MFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 563 ~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
. .+.++++++++|+.. + ..++|.|.+.+++++...
T Consensus 287 ----~--~~~l~~evl~~la~~-~--~~dir~L~g~l~~l~~~~ 321 (445)
T PRK12422 287 ----L--SIRIEETALDFLIEA-L--SSNVKSLLHALTLLAKRV 321 (445)
T ss_pred ----c--CCCCCHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHH
Confidence 1 477999999999996 3 356799999999996543
No 180
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=3.4e-10 Score=126.85 Aligned_cols=177 Identities=19% Similarity=0.317 Sum_probs=108.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEId 405 (684)
.+++|+||||+|||+|++++++.+ +..++.+++.++.. .+...-....+..+... + .....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~~~~~~~~f~~~--~---~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMKEGKLNEFREK--Y---RKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHhcccHHHHHHH--H---HhcCCEEEEechh
Confidence 468999999999999999999876 34567777766541 11000000001111110 0 0135699999999
Q ss_pred ccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCC
Q 005663 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~l 485 (684)
.+.... ..|..|+..++... +.... +|++++. ...
T Consensus 205 ~l~~~~------------~~q~elf~~~n~l~-------------------~~~k~-iIitsd~-~p~------------ 239 (440)
T PRK14088 205 FLIGKT------------GVQTELFHTFNELH-------------------DSGKQ-IVICSDR-EPQ------------ 239 (440)
T ss_pred hhcCcH------------HHHHHHHHHHHHHH-------------------HcCCe-EEEECCC-CHH------------
Confidence 875431 15667777775210 11112 3333321 100
Q ss_pred CcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHH
Q 005663 486 GFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 486 Gf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
++ ..+.+.+.+||. .++.+.+++.+++..|++....
T Consensus 240 -------------------------------~l--~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~--------- 277 (440)
T PRK14088 240 -------------------------------KL--SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE--------- 277 (440)
T ss_pred -------------------------------HH--HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH---------
Confidence 00 013366777874 4789999999999999976321
Q ss_pred HhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 564 ~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
.. .+.++++++++|+++. ..++|.|+.+|.++...+.
T Consensus 278 --~~--~~~l~~ev~~~Ia~~~---~~~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 278 --IE--HGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKE 314 (440)
T ss_pred --hc--CCCCCHHHHHHHHhcc---ccCHHHHHHHHHHHHHHHH
Confidence 11 5678999999999962 4567999999999865443
No 181
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.17 E-value=5.2e-10 Score=119.41 Aligned_cols=61 Identities=38% Similarity=0.623 Sum_probs=48.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--C
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--V 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~--~ 356 (684)
++||.+|.+..-..+. .+.++. .....+|+.||||||||.||-+||+.|| .
T Consensus 41 ~VGQ~~AReAaGvIv~----mik~gk-----------------------~aGrgiLi~GppgTGKTAlA~gIa~eLG~dv 93 (450)
T COG1224 41 LVGQEEAREAAGVIVK----MIKQGK-----------------------MAGRGILIVGPPGTGKTALAMGIARELGEDV 93 (450)
T ss_pred ccchHHHHHhhhHHHH----HHHhCc-----------------------ccccEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 6999999998776663 111111 1138999999999999999999999995 7
Q ss_pred CEEEEecccc
Q 005663 357 PFVIADATTL 366 (684)
Q Consensus 357 pfv~v~~s~l 366 (684)
||+.++++++
T Consensus 94 PF~~isgsEi 103 (450)
T COG1224 94 PFVAISGSEI 103 (450)
T ss_pred Cceeecccee
Confidence 9999999887
No 182
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.16 E-value=3.1e-10 Score=122.54 Aligned_cols=62 Identities=34% Similarity=0.568 Sum_probs=45.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~-- 355 (684)
-+|||.+|.+..-..+.. +..+. .....+||.||||||||.||-++|+.++
T Consensus 25 GlVGQ~~AReAagiiv~m----Ik~~K-----------------------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDM----IKEGK-----------------------IAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp TEES-HHHHHHHHHHHHH----HHTT-------------------------TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccChHHHHHHHHHHHHH----Hhccc-----------------------ccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 379999999988877741 11111 1137999999999999999999999996
Q ss_pred CCEEEEecccc
Q 005663 356 VPFVIADATTL 366 (684)
Q Consensus 356 ~pfv~v~~s~l 366 (684)
.||+.++++++
T Consensus 78 ~PF~~isgSEi 88 (398)
T PF06068_consen 78 VPFVSISGSEI 88 (398)
T ss_dssp S-EEEEEGGGG
T ss_pred CCeeEccccee
Confidence 79999999988
No 183
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.16 E-value=1.8e-10 Score=133.65 Aligned_cols=136 Identities=18% Similarity=0.330 Sum_probs=78.3
Q ss_pred cchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccC---CCCCceEEeeccEEEE
Q 005663 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKH---PRGDNIQIDTKDILFI 464 (684)
Q Consensus 388 ~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~---~~~~~i~IdtsNiifI 464 (684)
++.++.|.+|+|||||++.|.+. +|..|+++|+.+.+.+........ .....+.+ ++.+|
T Consensus 219 ~G~L~kAnGGtL~LDei~~L~~~--------------~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~---dvrvI 281 (637)
T PRK13765 219 AGAIHKAHKGVLFIDEINTLDLE--------------SQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPC---DFIMV 281 (637)
T ss_pred CCceeECCCcEEEEeChHhCCHH--------------HHHHHHHHHHhCCEEecccccccccccCCCcceee---eeEEE
Confidence 34566788999999999999777 999999999855544321111000 00112222 45677
Q ss_pred eCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc---eEEEecccC
Q 005663 465 CGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP---VLVSLLALT 541 (684)
Q Consensus 465 ~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d---~iI~f~pLs 541 (684)
++++... + +.+.|+|+.||. ..+.|.+-.
T Consensus 282 ~a~~~~l--------------------------------------l----------~~~dpdL~~rfk~~~v~v~f~~~~ 313 (637)
T PRK13765 282 AAGNLDA--------------------------------------L----------ENMHPALRSRIKGYGYEVYMRDTM 313 (637)
T ss_pred EecCcCH--------------------------------------H----------HhhhHHHHHHhccCeEEEEccccc
Confidence 7776311 0 123588888886 556665433
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHH
Q 005663 542 ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 542 ~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~ 594 (684)
+ +.......+ .+.+.+.....|....|+++|+..|.++ |....|.|+
T Consensus 314 ~-d~~e~~~~~----~~~iaqe~~~~G~l~~f~~eAVa~LI~~-~~R~ag~r~ 360 (637)
T PRK13765 314 E-DTPENRRKL----VRFVAQEVKRDGKIPHFDRDAVEEIIRE-AKRRAGRKG 360 (637)
T ss_pred C-CCHHHHHHH----HHHHHHHhhhccCCCCCCHHHHHHHHHH-HHHHhCCcc
Confidence 3 222222222 2222333333333558999999999987 554455554
No 184
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.2e-09 Score=118.99 Aligned_cols=186 Identities=23% Similarity=0.302 Sum_probs=112.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
|+||+++++.+..++... .-+..+||+||+|+|||++|+.+|+.+..
T Consensus 25 l~Gh~~a~~~L~~a~~~g-------------------------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~ 73 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREG-------------------------------KLHHALLFEGPEGIGKATLAFHLANHILSHP 73 (351)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 799999999999988510 01257999999999999999999998844
Q ss_pred -----CEEEE----ecc---ccc---cCCc--cc----cc--------hHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 357 -----PFVIA----DAT---TLT---QAGY--VG----ED--------VESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 357 -----pfv~v----~~s---~l~---~sgy--vG----~~--------~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
+.... +|. .+. .+++ +. .. .-..++.+.+...........-|++|||+|.|
T Consensus 74 ~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l 153 (351)
T PRK09112 74 DPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM 153 (351)
T ss_pred ccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc
Confidence 11100 111 000 0111 00 00 01223332221111111234569999999999
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
... .+++||+.||+ ...+.+||+.++..+
T Consensus 154 ~~~--------------aanaLLk~LEE---------------------pp~~~~fiLit~~~~---------------- 182 (351)
T PRK09112 154 NRN--------------AANAILKTLEE---------------------PPARALFILISHSSG---------------- 182 (351)
T ss_pred CHH--------------HHHHHHHHHhc---------------------CCCCceEEEEECChh----------------
Confidence 887 89999999992 112234444332100
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhC
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~ 567 (684)
.+.|.+++|+. .+.|.+++.+++.+++...
T Consensus 183 ----------------------------------~llptIrSRc~-~i~l~pl~~~~~~~~L~~~--------------- 212 (351)
T PRK09112 183 ----------------------------------RLLPTIRSRCQ-PISLKPLDDDELKKALSHL--------------- 212 (351)
T ss_pred ----------------------------------hccHHHHhhcc-EEEecCCCHHHHHHHHHHh---------------
Confidence 23477888984 8999999999999988751
Q ss_pred CceeecCHHHHHHHHHhcCCCCCChHHHHHHH
Q 005663 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLL 599 (684)
Q Consensus 568 gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iI 599 (684)
+....++++++..+++.+ ++..|...+++
T Consensus 213 ~~~~~~~~~~~~~i~~~s---~G~pr~Al~ll 241 (351)
T PRK09112 213 GSSQGSDGEITEALLQRS---KGSVRKALLLL 241 (351)
T ss_pred hcccCCCHHHHHHHHHHc---CCCHHHHHHHH
Confidence 111227788888887753 23345444444
No 185
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.14 E-value=2.8e-10 Score=118.67 Aligned_cols=199 Identities=21% Similarity=0.321 Sum_probs=120.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH------HhCCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR------YVNVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~------~l~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLf 400 (684)
.++||.||+|.||+.||+.|-+ .+..+|+.+||..+.. +.++|.- ...++..-....+.+.++.+|.+|
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCceEe
Confidence 6899999999999999999843 3467899999998853 2233332 111222222234567788899999
Q ss_pred EccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhcc
Q 005663 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 401 IDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~ 480 (684)
||||..+... -|..||+.+|++.+. | -+..+.+.-|+.-| +|+..||...+.+++
T Consensus 288 ldeigelgad--------------eqamllkaieekrf~-p------fgsdr~v~sdfqli----agtvrdlrq~vaeg~ 342 (531)
T COG4650 288 LDEIGELGAD--------------EQAMLLKAIEEKRFY-P------FGSDRQVSSDFQLI----AGTVRDLRQLVAEGK 342 (531)
T ss_pred hHhhhhcCcc--------------HHHHHHHHHHhhccC-C------CCCccccccchHHh----hhhHHHHHHHHhccc
Confidence 9999999776 799999999954432 1 11222223333333 677778877777765
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHH
Q 005663 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALG 557 (684)
Q Consensus 481 ~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~ 557 (684)
++. +|+.||+. .+.++.|.. ||++--+.-.
T Consensus 343 fre------------------------------------------dl~arinlwtf~lpgl~qr~ediepnldye----- 375 (531)
T COG4650 343 FRE------------------------------------------DLYARINLWTFTLPGLRQRQEDIEPNLDYE----- 375 (531)
T ss_pred hHH------------------------------------------HHHHhhheeeeeccccccCccccCCCccHH-----
Confidence 544 44444443 233333221 2222212111
Q ss_pred HHHHHHHhhCCceeecCHHHHHHHHHhcC----CCCCChHHHHHHHHHHHH
Q 005663 558 KQYRKMFQMNGVKLHFTENALRLIAKKAI----SKNTGARGLRSLLENILM 604 (684)
Q Consensus 558 kqy~~~~~~~gv~l~iteeAl~~La~~a~----~~~~GAR~Lr~iIe~~l~ 604 (684)
........|-.+.|..+|.+.....+- .|.++-|+|-..|.++..
T Consensus 376 --lerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmat 424 (531)
T COG4650 376 --LERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 (531)
T ss_pred --HHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHH
Confidence 112233456678888887665544332 366777999888877553
No 186
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=6.6e-10 Score=124.82 Aligned_cols=179 Identities=14% Similarity=0.261 Sum_probs=113.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccCCccccchH--HHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVE--SILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~--~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.+++|+|++|+|||+|++++++.+ +..++.+++.++.. .+...-.. ..+..+... ....-+|+|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~l~~~~~~~~~~~~~------~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDILQKTHKEIEQFKNE------ICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHHhhhHHHHHHHH------hccCCEEEEec
Confidence 568999999999999999998865 34567777766542 11110000 111111111 12345999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
|+.+.... ..+..|+.+++... +... .+|+|++..
T Consensus 215 iq~l~~k~------------~~~e~lf~l~N~~~-------------------~~~k-~iIltsd~~------------- 249 (450)
T PRK14087 215 VQFLSYKE------------KTNEIFFTIFNNFI-------------------ENDK-QLFFSSDKS------------- 249 (450)
T ss_pred cccccCCH------------HHHHHHHHHHHHHH-------------------HcCC-cEEEECCCC-------------
Confidence 99986431 26777877776210 1111 234454311
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYR 561 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~ 561 (684)
|+++ ..+.+.|++||. .++.+.+++.+++.+|+.+.+.
T Consensus 250 -------------------------------P~~l--~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~------- 289 (450)
T PRK14087 250 -------------------------------PELL--NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK------- 289 (450)
T ss_pred -------------------------------HHHH--hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH-------
Confidence 0000 135578888994 5899999999999999987422
Q ss_pred HHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005663 562 KMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 562 ~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
..|..+.++++++++|++.. ...+|.|..++.+++..+..
T Consensus 290 ----~~gl~~~l~~evl~~Ia~~~---~gd~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 290 ----NQNIKQEVTEEAINFISNYY---SDDVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred ----hcCCCCCCCHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHhc
Confidence 22334579999999999963 45689999999998755543
No 187
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.13 E-value=8.1e-10 Score=125.17 Aligned_cols=229 Identities=16% Similarity=0.237 Sum_probs=126.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC--EEEEecccccc-CC------------cc-ccchHHHHHHHHh----cccch
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ-AG------------YV-GEDVESILYKLLT----VSDYN 390 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p--fv~v~~s~l~~-sg------------yv-G~~~~~~l~~l~~----~a~~~ 390 (684)
.+++|+||||+|||++++.++..+... -..++.+.+.. .| |. ... ..-...++. ..++.
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~-~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHH-SASLTAMVGGGAIPGPGE 289 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCc-cchHHHHhCCCceehhhH
Confidence 789999999999999999998776311 11222222210 00 00 000 001111222 23466
Q ss_pred HHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCc
Q 005663 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 391 v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~ 470 (684)
+..+.+|||||||++.+.+. +|+.|++.||.+.+.|...|... ....++.+|+|.|..
T Consensus 290 l~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~--------~~pa~f~lIAa~NP~ 347 (506)
T PRK09862 290 ISLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKI--------TYPARFQLVAAMNPS 347 (506)
T ss_pred hhhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcce--------eccCCEEEEEeecCc
Confidence 88899999999999999887 99999999996666654333221 223567788877632
Q ss_pred CHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHH---
Q 005663 471 DIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ--- 547 (684)
Q Consensus 471 dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~--- 547 (684)
..|+-.... +.+ .+.....++. .+..++++|||..+.+++++.+++.+
T Consensus 348 -------------pcG~~~~~~-c~c-----~~~~~~~Y~~----------~ls~plLDRfdL~v~v~~~~~~~l~~~~~ 398 (506)
T PRK09862 348 -------------PTGHYQGNH-NRC-----TPEQTLRYLN----------RLSGPFLDRFDLSLEIPLPPPGILSKTVV 398 (506)
T ss_pred -------------cceecCCCC-CCc-----CHHHHHHHHh----------hCCHhHHhhccEEEEeCCCCHHHHhcccC
Confidence 133211100 111 1111223333 36799999999999999886554432
Q ss_pred -------HHhchHHHHHHHHH--HHHhhC--C----ceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005663 548 -------VLTEPKNALGKQYR--KMFQMN--G----VKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 548 -------Il~~~l~~L~kqy~--~~~~~~--g----v~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
|.+.....-..|.. ..+... + ..+.+++++.+.+.+.....+..+|...+++.- ..++.++..
T Consensus 399 ~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrv--ARTiADL~g 476 (506)
T PRK09862 399 PGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKV--ARTIADIDQ 476 (506)
T ss_pred CCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH--HHHHHHHcC
Confidence 11111100001101 111100 0 023567777777766544556778998888863 445555544
Q ss_pred C
Q 005663 613 V 613 (684)
Q Consensus 613 ~ 613 (684)
.
T Consensus 477 ~ 477 (506)
T PRK09862 477 S 477 (506)
T ss_pred C
Confidence 3
No 188
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.11 E-value=6.7e-10 Score=109.88 Aligned_cols=143 Identities=25% Similarity=0.357 Sum_probs=93.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccCCccccchHHHHHHHHhc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (684)
..+||+||+|+|||++|+.+++.+... +..++.. .+..+. ..++.+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~----~~~~~~---~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE----GQSIKV---DQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc----cCcCCH---HHHHHHHHH
Confidence 678999999999999999999987432 2221111 111121 233333333
Q ss_pred ccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeC
Q 005663 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~t 466 (684)
.......+...||+|||+|++... .++.||+.||. ...+.+||++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~---------------------~~~~~~~il~ 132 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE---------------------PPPNTLFILI 132 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 222112345679999999999887 89999999982 1123445554
Q ss_pred CCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHH
Q 005663 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~ 546 (684)
++.. ..+.+.+.+|.. ++.|.+++.+++.
T Consensus 133 ~~~~--------------------------------------------------~~l~~~i~sr~~-~~~~~~~~~~~~~ 161 (188)
T TIGR00678 133 TPSP--------------------------------------------------EKLLPTIRSRCQ-VLPFPPLSEEALL 161 (188)
T ss_pred ECCh--------------------------------------------------HhChHHHHhhcE-EeeCCCCCHHHHH
Confidence 3310 023466777875 8999999999998
Q ss_pred HHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhc
Q 005663 547 QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 547 ~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a 585 (684)
+++... | +++++++.|++.+
T Consensus 162 ~~l~~~---------------g----i~~~~~~~i~~~~ 181 (188)
T TIGR00678 162 QWLIRQ---------------G----ISEEAAELLLALA 181 (188)
T ss_pred HHHHHc---------------C----CCHHHHHHHHHHc
Confidence 887641 2 6889999999863
No 189
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.11 E-value=2.7e-11 Score=114.36 Aligned_cols=70 Identities=37% Similarity=0.753 Sum_probs=54.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
.+|||+|++||||+++|++|+.... .+|+.++|..+. .++++ .+.+|+|||+|||.+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~-------~a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLE-------QAKGGTLYLKNIDRL 81 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHH-------HCTTSEEEEECGCCS
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHH-------HcCCCEEEECChHHC
Confidence 7899999999999999999988774 467777776543 12222 246799999999999
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHh
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.. .|..|+..|+
T Consensus 82 ~~~--------------~Q~~L~~~l~ 94 (138)
T PF14532_consen 82 SPE--------------AQRRLLDLLK 94 (138)
T ss_dssp -HH--------------HHHHHHHHHH
T ss_pred CHH--------------HHHHHHHHHH
Confidence 998 9999999998
No 190
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-09 Score=127.90 Aligned_cols=190 Identities=22% Similarity=0.278 Sum_probs=131.4
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005663 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
.||. |||.++.++.+.+.+.+. .+.|-+|+|+||+|||.+++.+|..
T Consensus 168 klDP-vIGRd~EI~r~iqIL~RR--------------------------------~KNNPvLiGEpGVGKTAIvEGLA~r 214 (786)
T COG0542 168 KLDP-VIGRDEEIRRTIQILSRR--------------------------------TKNNPVLVGEPGVGKTAIVEGLAQR 214 (786)
T ss_pred CCCC-CcChHHHHHHHHHHHhcc--------------------------------CCCCCeEecCCCCCHHHHHHHHHHH
Confidence 3444 799999999999988611 1256799999999999999999977
Q ss_pred h----------CCCEEEEecccccc-CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCch
Q 005663 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 354 l----------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~ 422 (684)
. +..++.+|++.+.. .+|.|+= +..+..++... ..+.+-||||||||.+.......+..-|
T Consensus 215 Iv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~ev----~~~~~vILFIDEiHtiVGAG~~~G~a~D--- 286 (786)
T COG0542 215 IVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKEV----EKSKNVILFIDEIHTIVGAGATEGGAMD--- 286 (786)
T ss_pred HhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHHH----hcCCCeEEEEechhhhcCCCcccccccc---
Confidence 7 45588999988763 7788875 67777776543 3345789999999999876322110122
Q ss_pred HHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCch
Q 005663 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~ 502 (684)
.-+.|...|.-+. +-.|.+++
T Consensus 287 --AaNiLKPaLARGe-----------------------L~~IGATT---------------------------------- 307 (786)
T COG0542 287 --AANLLKPALARGE-----------------------LRCIGATT---------------------------------- 307 (786)
T ss_pred --hhhhhHHHHhcCC-----------------------eEEEEecc----------------------------------
Confidence 6677777776111 22233333
Q ss_pred hhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHH
Q 005663 503 AVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La 582 (684)
.+.+.+.++.+ +.|-.||. .|....++.++-..|++. +...|...+ .+.++++|+...+
T Consensus 308 ---~~EYRk~iEKD--------~AL~RRFQ-~V~V~EPs~e~ti~ILrG----lk~~yE~hH-----~V~i~D~Al~aAv 366 (786)
T COG0542 308 ---LDEYRKYIEKD--------AALERRFQ-KVLVDEPSVEDTIAILRG----LKERYEAHH-----GVRITDEALVAAV 366 (786)
T ss_pred ---HHHHHHHhhhc--------hHHHhcCc-eeeCCCCCHHHHHHHHHH----HHHHHHHcc-----CceecHHHHHHHH
Confidence 23344445443 55556666 588999999999999986 666666543 5678888888877
Q ss_pred Hh
Q 005663 583 KK 584 (684)
Q Consensus 583 ~~ 584 (684)
..
T Consensus 367 ~L 368 (786)
T COG0542 367 TL 368 (786)
T ss_pred HH
Confidence 65
No 191
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.08 E-value=1.9e-09 Score=111.13 Aligned_cols=175 Identities=22% Similarity=0.318 Sum_probs=111.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---~ 355 (684)
++|.++.|+.|......... + .|..|+||+|+.|||||+++|++...+ +
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~----G------------------------~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQ----G------------------------LPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHc----C------------------------CCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 69999999999987752222 1 123899999999999999999998777 5
Q ss_pred CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhc
Q 005663 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..++.+...++.. ....+ ..+...+ .+=|||+|++.- .. ++.-...|-.+|||
T Consensus 81 LRlIev~k~~L~~-------l~~l~-~~l~~~~------~kFIlf~DDLsF--e~-----------~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 81 LRLIEVSKEDLGD-------LPELL-DLLRDRP------YKFILFCDDLSF--EE-----------GDTEYKALKSVLEG 133 (249)
T ss_pred ceEEEECHHHhcc-------HHHHH-HHHhcCC------CCEEEEecCCCC--CC-----------CcHHHHHHHHHhcC
Confidence 5678887777652 12333 3333333 245999998542 11 12257888889997
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKS 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.+- -...|+++.+|+|...| |.+...++.-.-. ..+.+
T Consensus 134 gle-----------------~~P~NvliyATSNRRHL---v~E~~~d~~~~~~----------------------~eih~ 171 (249)
T PF05673_consen 134 GLE-----------------ARPDNVLIYATSNRRHL---VPESFSDREDIQD----------------------DEIHP 171 (249)
T ss_pred ccc-----------------cCCCcEEEEEecchhhc---cchhhhhccCCCc----------------------cccCc
Confidence 542 23567889989885542 2222111000000 01112
Q ss_pred hhHHhcCCChhhhcccceEEEecccCHHHHHHHHhch
Q 005663 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 516 ~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~ 552 (684)
.|.++.. -.|..||..+|.|.+++.++..+|+...
T Consensus 172 ~d~~eEk--lSLsDRFGL~l~F~~~~q~~YL~IV~~~ 206 (249)
T PF05673_consen 172 SDTIEEK--LSLSDRFGLWLSFYPPDQEEYLAIVRHY 206 (249)
T ss_pred chHHHHH--HhHHHhCCcEEEecCCCHHHHHHHHHHH
Confidence 2222211 2467899999999999999999999874
No 192
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=4.4e-09 Score=115.22 Aligned_cols=111 Identities=25% Similarity=0.349 Sum_probs=69.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+||+.+++.|..++... .-+..+||+||+|+||+++|.++|+.+...-
T Consensus 21 iiGq~~~~~~L~~~~~~~-------------------------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 21 LFGHAAAEAALLDAYRSG-------------------------------RLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ccChHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 799999999999888511 0125699999999999999999999883210
Q ss_pred -------E--------EEecc---cc---ccCCcc-------ccc-------hHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 359 -------V--------IADAT---TL---TQAGYV-------GED-------VESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 359 -------v--------~v~~s---~l---~~sgyv-------G~~-------~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
. .-+|. .+ ..+++. +.. .-..++++............+-|++|||
T Consensus 70 ~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDe 149 (365)
T PRK07471 70 PPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDT 149 (365)
T ss_pred CCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEec
Confidence 0 00010 00 000000 000 0123444443322222234567999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+|.+... .+++||+.+|
T Consensus 150 ad~m~~~--------------aanaLLK~LE 166 (365)
T PRK07471 150 ADEMNAN--------------AANALLKVLE 166 (365)
T ss_pred hHhcCHH--------------HHHHHHHHHh
Confidence 9999887 9999999999
No 193
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.5e-09 Score=116.14 Aligned_cols=105 Identities=21% Similarity=0.328 Sum_probs=69.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
|+||+.+++.+...+... .-++.+||+||+|+|||++|+++|+.+...
T Consensus 6 i~g~~~~~~~l~~~~~~~-------------------------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~ 54 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKN-------------------------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKS 54 (313)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 799999999998887410 012677999999999999999999987332
Q ss_pred -------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 358 -------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 358 -------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+..+... +..-++ -..++++..........+..-|++|||+|++..+ .+++||
T Consensus 55 ~~~~h~D~~~~~~~---~~~~i~---v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naLL 114 (313)
T PRK05564 55 QQREYVDIIEFKPI---NKKSIG---VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAFL 114 (313)
T ss_pred CCCCCCCeEEeccc---cCCCCC---HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHHH
Confidence 2222111 011111 1234454442111111346679999999999887 899999
Q ss_pred HHHh
Q 005663 431 KMLE 434 (684)
Q Consensus 431 ~~LE 434 (684)
+.||
T Consensus 115 K~LE 118 (313)
T PRK05564 115 KTIE 118 (313)
T ss_pred HHhc
Confidence 9999
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.04 E-value=1.6e-09 Score=98.89 Aligned_cols=86 Identities=35% Similarity=0.592 Sum_probs=58.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHH-HHhcccchHHhhcCCEEEEccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYK-LLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~-l~~~a~~~v~~a~~gVLfIDEIdk 406 (684)
.+++++||||||||++++.+++.+ +.+++.+++....... ... ..... .............+++|+|||++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL-VVA---ELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh-HHH---HHhhhhhHhHHHHhhccCCCeEEEEeChhh
Confidence 689999999999999999999998 8889999987765311 111 00000 000000111224578999999999
Q ss_pred cchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+... .+..++..++
T Consensus 96 ~~~~--------------~~~~~~~~i~ 109 (151)
T cd00009 96 LSRG--------------AQNALLRVLE 109 (151)
T ss_pred hhHH--------------HHHHHHHHHH
Confidence 8555 6778888887
No 195
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.03 E-value=2.2e-09 Score=124.54 Aligned_cols=252 Identities=18% Similarity=0.223 Sum_probs=144.5
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
+.+.+-..|.|.+.+|+.+.-++.-...+... + ..--...-|+||+|.||||||.|.|.+
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~-----------~---------g~~iRGDInILLvGDPgtaKSqlLk~v 339 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLFGGVKKNLP-----------D---------GTRIRGDIHILLVGDPGTAKSQLLKYV 339 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhcCCCcccCC-----------C---------CcccccceeEEEcCCCchhHHHHHHHH
Confidence 33344556899999999888776411111000 0 000011279999999999999999999
Q ss_pred HHHhCCCEEEEeccccccCCccccchHHH-HHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHH
Q 005663 351 ARYVNVPFVIADATTLTQAGYVGEDVESI-LYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sgyvG~~~~~~-l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
++.+-...+ ++...-...|+...-.... ..+ +....+.+..|.+||..|||+|++... -+.+|
T Consensus 340 ~~~aPr~vy-tsgkgss~~GLTAav~rd~~tge-~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~ai 403 (682)
T COG1241 340 AKLAPRGVY-TSGKGSSAAGLTAAVVRDKVTGE-WVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAI 403 (682)
T ss_pred HhhCCceEE-EccccccccCceeEEEEccCCCe-EEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHH
Confidence 988844322 2222211122211111110 011 111223445678999999999999887 89999
Q ss_pred HHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhh
Q 005663 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~l 509 (684)
.++||...++|...|-.+ .-...+-+++++|... ++ |... ..+
T Consensus 404 hEaMEQQtIsIaKAGI~a--------tLnARcsvLAAaNP~~-------Gr------yd~~----------------~~~ 446 (682)
T COG1241 404 HEAMEQQTISIAKAGITA--------TLNARCSVLAAANPKF-------GR------YDPK----------------KTV 446 (682)
T ss_pred HHHHHhcEeeecccceee--------ecchhhhhhhhhCCCC-------Cc------CCCC----------------CCH
Confidence 999998777764444111 1122355556665321 11 1100 111
Q ss_pred hhhccchhHHhcCCChhhhcccceEEEe-cccCHHHHHHHHhchHHH------------------------HHHHHHHHH
Q 005663 510 METVKSSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQVLTEPKNA------------------------LGKQYRKMF 564 (684)
Q Consensus 510 l~~v~~~dli~~~f~PeLl~R~d~iI~f-~pLs~eel~~Il~~~l~~------------------------L~kqy~~~~ 564 (684)
.+.+ .|+++|++|||.++.+ +..+++.-..|+.+.++. +.++|-..
T Consensus 447 ~enI--------~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~Y- 517 (682)
T COG1241 447 AENI--------NLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISY- 517 (682)
T ss_pred HHhc--------CCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHH-
Confidence 1222 4789999999987555 445554344444443332 25566553
Q ss_pred hhCCceeecCHHHHHHHHHhcCC-------------CCCChHHHHHHHHHHHH
Q 005663 565 QMNGVKLHFTENALRLIAKKAIS-------------KNTGARGLRSLLENILM 604 (684)
Q Consensus 565 ~~~gv~l~iteeAl~~La~~a~~-------------~~~GAR~Lr~iIe~~l~ 604 (684)
....+...++++|.+.|.++-.. -..-+|.|+++|+=.-.
T Consensus 518 AR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA 570 (682)
T COG1241 518 ARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEA 570 (682)
T ss_pred HhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHH
Confidence 33346678999999999875211 12448999998874433
No 196
>PRK06620 hypothetical protein; Validated
Probab=99.01 E-value=6.2e-09 Score=106.04 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=50.0
Q ss_pred hhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 005663 525 PEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENI 602 (684)
Q Consensus 525 PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~ 602 (684)
|+|++|+. .++.+.+++.+++..++.+... .. .+.++++++++|+++. +..+|.|.++++++
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~-----------~~--~l~l~~ev~~~L~~~~---~~d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFS-----------IS--SVTISRQIIDFLLVNL---PREYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 78888986 3789999999998888876321 11 5779999999999973 55679999999985
Q ss_pred H
Q 005663 603 L 603 (684)
Q Consensus 603 l 603 (684)
-
T Consensus 194 ~ 194 (214)
T PRK06620 194 N 194 (214)
T ss_pred H
Confidence 4
No 197
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.01 E-value=2.6e-09 Score=113.06 Aligned_cols=85 Identities=31% Similarity=0.418 Sum_probs=60.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC------------------------CCEEEEeccccccCCccccchHHHHHHHHhcc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLTVS 387 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~------------------------~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a 387 (684)
.+||+||||+|||++|.++|+.+. ..++.++.++..... + ....++++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i---~~~~vr~~~~~~ 101 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-I---IVEQVRELAEFL 101 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-c---hHHHHHHHHHHh
Confidence 499999999999999999999986 356666666543211 1 123344443332
Q ss_pred cchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 388 ~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.........-||+|||+|.|... .+++|++.||
T Consensus 102 ~~~~~~~~~kviiidead~mt~~--------------A~nallk~lE 134 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTED--------------AANALLKTLE 134 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhc
Confidence 21111245679999999999987 9999999999
No 198
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.01 E-value=5.7e-09 Score=117.94 Aligned_cols=255 Identities=19% Similarity=0.276 Sum_probs=146.2
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
|...|...|.|.+.+|.-|.-.+.- +..+. ++ ...+ . +.--||+++|.|||||+-+.++.
T Consensus 339 lv~Sl~PsIyGhe~VK~GilL~LfG-------Gv~K~--a~---eg~~--l------RGDinv~iVGDPgt~KSQfLk~v 398 (764)
T KOG0480|consen 339 LVNSLFPSIYGHELVKAGILLSLFG-------GVHKS--AG---EGTS--L------RGDINVCIVGDPGTGKSQFLKAV 398 (764)
T ss_pred HHHhhCccccchHHHHhhHHHHHhC-------Ccccc--CC---CCcc--c------cCCceEEEeCCCCccHHHHHHHH
Confidence 4555666799999999988876641 11111 10 0000 0 11279999999999999999999
Q ss_pred HHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+..+-...+ ++...-+.+|+.-.-+..-...-|.-..+.+-.+.+||-.|||+||+..+ -|.+|+
T Consensus 399 ~~fsPR~vY-tsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAih 463 (764)
T KOG0480|consen 399 CAFSPRSVY-TSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIH 463 (764)
T ss_pred hccCCcceE-ecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHH
Confidence 988854433 22221111222111000000001111112233467899999999999876 699999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
+.||...++|...|-.. .++++ .-+|+++|+.+ ++ | ....++.
T Consensus 464 EAMEQQtISIaKAGv~a-------TLnAR-tSIlAAANPv~-------Gh------Y----------------dR~ktl~ 506 (764)
T KOG0480|consen 464 EAMEQQTISIAKAGVVA-------TLNAR-TSILAAANPVG-------GH------Y----------------DRKKTLR 506 (764)
T ss_pred HHHHhheehheecceEE-------eecch-hhhhhhcCCcC-------Cc------c----------------ccccchh
Confidence 99998888775544322 22222 23445555432 00 0 0112333
Q ss_pred hhccchhHHhcCCChhhhcccceE-EEecccCHHHHHHHHhchH-----------------HHHHHHHHHHHhhCCceee
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPVL-VSLLALTENQLVQVLTEPK-----------------NALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~i-I~f~pLs~eel~~Il~~~l-----------------~~L~kqy~~~~~~~gv~l~ 572 (684)
+.+ .+.+++++|||.+ |.++..++..=..|.++-+ .+..++|-.... .+...
T Consensus 507 eNi--------~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR--~~~P~ 576 (764)
T KOG0480|consen 507 ENI--------NMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYAR--NFKPK 576 (764)
T ss_pred hhc--------CCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHH--hcCcc
Confidence 333 3789999999985 4556666644333433321 123344444222 55778
Q ss_pred cCHHHHHHHHHhcC--------------CCCCChHHHHHHHHHHHHHHHhcC
Q 005663 573 FTENALRLIAKKAI--------------SKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 573 iteeAl~~La~~a~--------------~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
++.+|-+.|.++ | +|...+|+|+++|+ |.+|++++
T Consensus 577 ls~ea~~~lve~-Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsEA~Ar~ 625 (764)
T KOG0480|consen 577 LSKEASEMLVEK-YKGLRQRDAQGNNRSSYRITVRQLESLIR--LSEARARV 625 (764)
T ss_pred ccHHHHHHHHHH-HHHHHHhhccccCcccccccHHHHHHHHH--HHHHHHhh
Confidence 899998888865 3 35667999999986 45555544
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=98.99 E-value=3.6e-09 Score=125.78 Aligned_cols=171 Identities=21% Similarity=0.281 Sum_probs=118.7
Q ss_pred cccccccceEEEEc--cCCCcHHHHHHHHHHHh-----CCCEEEEeccccccCCccccc-hHHHHHHHHhcccchHHhhc
Q 005663 324 DTVELEKSNILLMG--PTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 324 ~~~~~~~~~vLL~G--PpGTGKT~LAkaLA~~l-----~~pfv~v~~s~l~~sgyvG~~-~~~~l~~l~~~a~~~v~~a~ 395 (684)
.++..|.-+-+..| |.+.|||++|++||+.+ +.+++.+|+++.. |.+ +...+.......+. ....
T Consensus 558 ~~~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----gid~IR~iIk~~a~~~~~--~~~~ 630 (846)
T PRK04132 558 YDLHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-----GINVIREKVKEFARTKPI--GGAS 630 (846)
T ss_pred EEeccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----cHHHHHHHHHHHHhcCCc--CCCC
Confidence 34556667778889 99999999999999998 4579999998742 211 12222222222211 1112
Q ss_pred CCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHH
Q 005663 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~ 475 (684)
..|++|||+|.|... .|++|++.||. ...++.||+++|..
T Consensus 631 ~KVvIIDEaD~Lt~~--------------AQnALLk~lEe---------------------p~~~~~FILi~N~~----- 670 (846)
T PRK04132 631 FKIIFLDEADALTQD--------------AQQALRRTMEM---------------------FSSNVRFILSCNYS----- 670 (846)
T ss_pred CEEEEEECcccCCHH--------------HHHHHHHHhhC---------------------CCCCeEEEEEeCCh-----
Confidence 369999999999887 99999999992 12346677766521
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH
Q 005663 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
..+.|++++|.. ++.|.+++.+++..++..
T Consensus 671 ---------------------------------------------~kIi~tIrSRC~-~i~F~~ls~~~i~~~L~~---- 700 (846)
T PRK04132 671 ---------------------------------------------SKIIEPIQSRCA-IFRFRPLRDEDIAKRLRY---- 700 (846)
T ss_pred ---------------------------------------------hhCchHHhhhce-EEeCCCCCHHHHHHHHHH----
Confidence 024578888875 789999999998887764
Q ss_pred HHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 556 L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+.+ .. .+.++++++..|+..+ +++.|..-+.+|.+.
T Consensus 701 I~~-------~E--gi~i~~e~L~~Ia~~s---~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 701 IAE-------NE--GLELTEEGLQAILYIA---EGDMRRAINILQAAA 736 (846)
T ss_pred HHH-------hc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 211 12 4568999999999863 455688878887654
No 200
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.97 E-value=1.4e-08 Score=106.14 Aligned_cols=62 Identities=24% Similarity=0.413 Sum_probs=47.7
Q ss_pred cCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005663 521 YGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 521 ~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe 600 (684)
.+.+++|+.|+- +|.-.+++++++++|+... .+.. .+.++++++..|++.+ .-+.||-+++
T Consensus 349 hGip~dllDRl~-Iirt~~y~~~e~r~Ii~~R-----------a~~E--~l~~~e~a~~~l~~~g-----t~tsLRy~vq 409 (456)
T KOG1942|consen 349 HGIPPDLLDRLL-IIRTLPYDEEEIRQIIKIR-----------AQVE--GLQVEEEALDLLAEIG-----TSTSLRYAVQ 409 (456)
T ss_pred CCCCHHHhhhee-EEeeccCCHHHHHHHHHHH-----------Hhhh--cceecHHHHHHHHhhc-----cchhHHHHHH
Confidence 478899999996 6788899999999999752 1112 6789999999999953 2366777776
Q ss_pred H
Q 005663 601 N 601 (684)
Q Consensus 601 ~ 601 (684)
-
T Consensus 410 L 410 (456)
T KOG1942|consen 410 L 410 (456)
T ss_pred h
Confidence 3
No 201
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.6e-08 Score=110.79 Aligned_cols=209 Identities=22% Similarity=0.202 Sum_probs=130.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
+.+-+.-++++...+...++. -.|.+++++||||||||.+++.+.+++..+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~----------------------------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG----------------------------ERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC----------------------------CCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 567788888888776422221 013679999999999999999999988544
Q ss_pred ----EEEEeccccccC--------------CccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCC
Q 005663 358 ----FVIADATTLTQA--------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 358 ----fv~v~~s~l~~s--------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d 419 (684)
++.+||..+..+ -..|......+..+.+.- -.....-||+|||+|.|....+
T Consensus 71 ~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~---~~~~~~~IvvLDEid~L~~~~~------- 140 (366)
T COG1474 71 ANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNL---SKKGKTVIVILDEVDALVDKDG------- 140 (366)
T ss_pred ccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH---HhcCCeEEEEEcchhhhccccc-------
Confidence 899999877531 011222111111111110 0123456899999999987621
Q ss_pred CchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCC
Q 005663 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~ 499 (684)
.+.-.|++..+. . ..++.+|+.+|..++..
T Consensus 141 ----~~LY~L~r~~~~--------------------~-~~~v~vi~i~n~~~~~~------------------------- 170 (366)
T COG1474 141 ----EVLYSLLRAPGE--------------------N-KVKVSIIAVSNDDKFLD------------------------- 170 (366)
T ss_pred ----hHHHHHHhhccc--------------------c-ceeEEEEEEeccHHHHH-------------------------
Confidence 144444444430 0 33466666665322211
Q ss_pred CchhhhhhhhhhhccchhHHhcCCChhhhcccc-eEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHH
Q 005663 500 VTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d-~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl 578 (684)
.+.|-+.+++. ..|.|+|++.+|+..|+....+.- + ..-.++++++
T Consensus 171 ----------------------~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~-------~----~~~~~~~~vl 217 (366)
T COG1474 171 ----------------------YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG-------F----SAGVIDDDVL 217 (366)
T ss_pred ----------------------HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh-------c----cCCCcCccHH
Confidence 12344445553 258999999999999998743221 1 1456899999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005663 579 RLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 579 ~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
+.++..+....+.||-.-.+++.+...|-.
T Consensus 218 ~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 218 KLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 999988666666788877777777665543
No 202
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=6.2e-09 Score=111.93 Aligned_cols=47 Identities=28% Similarity=0.363 Sum_probs=39.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.|+||+++++.+..++... .-+..+||+||+|+||+++|+++|+.+.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~-------------------------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN-------------------------------RIAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4799999999999988510 0127899999999999999999999873
No 203
>PRK09087 hypothetical protein; Validated
Probab=98.95 E-value=5.9e-09 Score=107.05 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=52.8
Q ss_pred Chhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 005663 524 IPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLEN 601 (684)
Q Consensus 524 ~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~ 601 (684)
.|+|++|+. .++.+.+++.+++.+|+.+.++. . .+.++++++++|+++. . ...|++..++.+
T Consensus 135 ~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-----------~--~~~l~~ev~~~La~~~-~--r~~~~l~~~l~~ 198 (226)
T PRK09087 135 LPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD-----------R--QLYVDPHVVYYLVSRM-E--RSLFAAQTIVDR 198 (226)
T ss_pred cccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHh-h--hhHHHHHHHHHH
Confidence 488999995 58999999999999999864322 1 5789999999999973 3 445778877777
Q ss_pred HHHHHHh
Q 005663 602 ILMDAMY 608 (684)
Q Consensus 602 ~l~~al~ 608 (684)
+-..++.
T Consensus 199 L~~~~~~ 205 (226)
T PRK09087 199 LDRLALE 205 (226)
T ss_pred HHHHHHH
Confidence 6655543
No 204
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.95 E-value=1.1e-08 Score=99.81 Aligned_cols=104 Identities=29% Similarity=0.420 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC---
Q 005663 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP--- 357 (684)
Q Consensus 281 GQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p--- 357 (684)
||+++++.|..++.+.. -+..+||+||+|+||+++|+++|+.+...
T Consensus 1 gq~~~~~~L~~~~~~~~-------------------------------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-------------------------------LPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---------------------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred CcHHHHHHHHHHHHcCC-------------------------------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 89999999998885110 12678999999999999999999888321
Q ss_pred --------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccC
Q 005663 358 --------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 358 --------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~ 417 (684)
+..++..... ..++ -..++++..........+..-|++|||+|+|...
T Consensus 50 ~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~--~~i~---i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------- 117 (162)
T PF13177_consen 50 EDPCGECRSCRRIEEGNHPDFIIIKPDKKK--KSIK---IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------- 117 (162)
T ss_dssp TT--SSSHHHHHHHTT-CTTEEEEETTTSS--SSBS---HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-------
T ss_pred CCCCCCCHHHHHHHhccCcceEEEeccccc--chhh---HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-------
Confidence 2333222110 0122 2334444443322222345679999999999988
Q ss_pred CCCchHHHHHHHHHHHh
Q 005663 418 RDVSGEGVQQALLKMLE 434 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LE 434 (684)
.|++||+.||
T Consensus 118 -------a~NaLLK~LE 127 (162)
T PF13177_consen 118 -------AQNALLKTLE 127 (162)
T ss_dssp -------HHHHHHHHHH
T ss_pred -------HHHHHHHHhc
Confidence 9999999999
No 205
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=4.3e-09 Score=113.76 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=67.4
Q ss_pred ccC-hHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 279 VIG-QERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 279 ViG-Qd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
|+| |+.+++.+...+... .-++.+||+||+|+||+++|+++|+.+..+
T Consensus 7 i~~~q~~~~~~L~~~~~~~-------------------------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-------------------------------RLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 566 999999998887410 012667999999999999999999887321
Q ss_pred E--EE------Eec--------cccccCCccccch-HHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCC
Q 005663 358 F--VI------ADA--------TTLTQAGYVGEDV-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDV 420 (684)
Q Consensus 358 f--v~------v~~--------s~l~~sgyvG~~~-~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~ 420 (684)
- -. -+| .++......|... -..++++..........+...|++|||+|++...
T Consensus 56 ~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~---------- 125 (329)
T PRK08058 56 ERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS---------- 125 (329)
T ss_pred CCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH----------
Confidence 0 00 000 0110000001100 1233333322111111245679999999999887
Q ss_pred chHHHHHHHHHHHh
Q 005663 421 SGEGVQQALLKMLE 434 (684)
Q Consensus 421 ~~e~vq~~LL~~LE 434 (684)
.+++||+.||
T Consensus 126 ----a~NaLLK~LE 135 (329)
T PRK08058 126 ----AANSLLKFLE 135 (329)
T ss_pred ----HHHHHHHHhc
Confidence 9999999999
No 206
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.91 E-value=1.5e-08 Score=116.89 Aligned_cols=197 Identities=11% Similarity=0.078 Sum_probs=127.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEeccccccCCccccc-hHHHHHHHH-hcccchHHhhcCCEEEEccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGED-VESILYKLL-TVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~--pfv~v~~s~l~~sgyvG~~-~~~~l~~l~-~~a~~~v~~a~~gVLfIDEIdk 406 (684)
.+|||.|+.||+|++++++++..+.. ||+.+--+. ++...+|.. .+..+..=- ...++.+..+++|||||||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~-t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGI-ADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCC-cHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 78999999999999999999999854 776544332 223455532 222221111 1346778889999999999999
Q ss_pred cchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCC
Q 005663 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lG 486 (684)
+.+. +++.|++.||.+.++|.-.|..... -.++++|++-+..
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR~G~s~~~--------Pa~F~LIat~~~~---------------- 146 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLERDGLALRL--------PARFGLVALDEGA---------------- 146 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEECCcEEec--------CCCcEEEecCCCh----------------
Confidence 9988 9999999999777776444432222 2345555541100
Q ss_pred cCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhh
Q 005663 487 FGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (684)
Q Consensus 487 f~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~ 566 (684)
. ..+.+++.++.||+..|.+..++..+...... ....+ ...++.+.
T Consensus 147 ---------------------~----------~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~-~~~~I-~~AR~rl~- 192 (584)
T PRK13406 147 ---------------------E----------EDERAPAALADRLAFHLDLDGLALRDAREIPI-DADDI-AAARARLP- 192 (584)
T ss_pred ---------------------h----------cccCCCHHhHhheEEEEEcCCCChHHhcccCC-CHHHH-HHHHHHHc-
Confidence 0 01247789999999999999998876543111 11122 22233331
Q ss_pred CCceeecCHHHHHHHHHhcCCCCC-ChHHHHHHHHHHH
Q 005663 567 NGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENIL 603 (684)
Q Consensus 567 ~gv~l~iteeAl~~La~~a~~~~~-GAR~Lr~iIe~~l 603 (684)
.+.++++.++++++.+...+. +.|..-.++.-.-
T Consensus 193 ---~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraAR 227 (584)
T PRK13406 193 ---AVGPPPEAIAALCAAAAALGIASLRAPLLALRAAR 227 (584)
T ss_pred ---cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 577899999998876555454 5677666665433
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.90 E-value=3.3e-08 Score=107.46 Aligned_cols=60 Identities=23% Similarity=0.213 Sum_probs=46.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~- 356 (684)
.++|+++++..+...+..... +.. .....++|+||||+|||++|++|++.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~------------g~~--------------~~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQ------------GLE--------------ERKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHh------------cCC--------------CCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 589999999999987752111 000 11267899999999999999999999965
Q ss_pred ------CEEEEec
Q 005663 357 ------PFVIADA 363 (684)
Q Consensus 357 ------pfv~v~~ 363 (684)
+++.+..
T Consensus 106 s~t~eG~~Y~~~~ 118 (361)
T smart00763 106 SKTPEGRRYTFKW 118 (361)
T ss_pred cccccCceEEEEe
Confidence 8888877
No 208
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.90 E-value=6e-08 Score=100.53 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=52.0
Q ss_pred hhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 525 PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 525 PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
..+.+|+...+.+++++.+|+.+++...+... . ......+++++++.|.+.+ .+..|.+..+...++.
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~--------g-~~~~~~~~~~~~~~i~~~s---~G~p~~i~~l~~~~~~ 244 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERA--------G-NRDAPVFSEGAFDAIHRFS---RGIPRLINILCDRLLL 244 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHHHHHHc--------C-CCCCCCcCHHHHHHHHHHc---CCcccHHHHHHHHHHH
Confidence 35678888889999999999999887632211 1 0113468999999999963 2336788888888877
Q ss_pred HHHhc
Q 005663 605 DAMYE 609 (684)
Q Consensus 605 ~al~e 609 (684)
.+..+
T Consensus 245 ~a~~~ 249 (269)
T TIGR03015 245 SAFLE 249 (269)
T ss_pred HHHHc
Confidence 76553
No 209
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.89 E-value=4.4e-08 Score=112.38 Aligned_cols=86 Identities=23% Similarity=0.308 Sum_probs=65.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.-+||+||||-|||+||+.+|+.+|...+.+|+++-.. +..+...+..+.......-+..+|..|+|||||-..+.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~ 402 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA 402 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc----HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH
Confidence 66679999999999999999999999999999997642 22334444444443322112246778999999998765
Q ss_pred hcccccCCCCchHHHHHHHHHHHh
Q 005663 411 AESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
..+.||.++.
T Consensus 403 --------------~Vdvilslv~ 412 (877)
T KOG1969|consen 403 --------------AVDVILSLVK 412 (877)
T ss_pred --------------HHHHHHHHHH
Confidence 8899999987
No 210
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.88 E-value=1.3e-08 Score=111.40 Aligned_cols=211 Identities=22% Similarity=0.272 Sum_probs=129.2
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005663 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
.+...++||+..|..|.....+ ....++|+.|+.|||||+++|+||..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~--------------------------------P~iggvLI~G~kGtaKSt~~Rala~L 61 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD--------------------------------PQIGGALIAGEKGTAKSTLARALADL 61 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc--------------------------------cccceeEEecCCCccHHHHHHHHHHh
Confidence 3455689999999987755421 11279999999999999999999999
Q ss_pred hCCCEEEEec----ccc-----------------------------------ccCCcccc-chHHHHHH-HHhcccchHH
Q 005663 354 VNVPFVIADA----TTL-----------------------------------TQAGYVGE-DVESILYK-LLTVSDYNVA 392 (684)
Q Consensus 354 l~~pfv~v~~----s~l-----------------------------------~~sgyvG~-~~~~~l~~-l~~~a~~~v~ 392 (684)
|.---+...| .-. ++-..+|. +.++.+.. .-.-.++.+.
T Consensus 62 Lp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa 141 (423)
T COG1239 62 LPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLA 141 (423)
T ss_pred CCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchh
Confidence 9321111122 000 00012332 11222221 1122467788
Q ss_pred hhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCH
Q 005663 393 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI 472 (684)
Q Consensus 393 ~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dL 472 (684)
.+++|||++||+..|... +|+.||.+++.+.-.|..+|-... .-.++++|.|.|..
T Consensus 142 ~AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~--------hpa~fvligTmNPE-- 197 (423)
T COG1239 142 RANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIR--------HPARFLLIGTMNPE-- 197 (423)
T ss_pred hccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeec--------cCccEEEEeecCcc--
Confidence 999999999999999887 999999999843322222332111 23357788777642
Q ss_pred HHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEec-ccCHHHHHHHHhc
Q 005663 473 EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLL-ALTENQLVQVLTE 551 (684)
Q Consensus 473 ek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~-pLs~eel~~Il~~ 551 (684)
...++|.|+.||...|... +.+.++..+|+.+
T Consensus 198 -----------------------------------------------eGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 198 -----------------------------------------------EGELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred -----------------------------------------------ccccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 1136799999999877664 5555777777765
Q ss_pred hHH------HHHHHHHHHH---h------hCC-ceeecCHHHHHHHHHhcCC
Q 005663 552 PKN------ALGKQYRKMF---Q------MNG-VKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 552 ~l~------~L~kqy~~~~---~------~~g-v~l~iteeAl~~La~~a~~ 587 (684)
... .+.++|.... . ... ..+.+++.+..++++.+..
T Consensus 231 ~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~ 282 (423)
T COG1239 231 RLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCAR 282 (423)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHH
Confidence 432 1333332211 1 111 2566888888888886543
No 211
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.88 E-value=7e-09 Score=117.97 Aligned_cols=230 Identities=18% Similarity=0.280 Sum_probs=130.1
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
|.+.+...|.|.|.+|+.+.-.+.- +..+.. ..+.. -..--||||+|.||||||.+.+.+
T Consensus 423 La~SiAPsIye~edvKkglLLqLfG-------Gt~k~~--~~~~~-----------~R~~INILL~GDPGtsKSqlLqyv 482 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLFG-------GTRKED--EKSGR-----------FRGDINILLVGDPGTSKSQLLQYC 482 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHhc-------CCcccc--ccccc-----------ccccceEEEecCCCcCHHHHHHHH
Confidence 4455556689999999988877641 111000 00000 011279999999999999999999
Q ss_pred HHHhCCCEEEEeccccccCC---ccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHH
Q 005663 351 ARYVNVPFVIADATTLTQAG---YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sg---yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~ 427 (684)
++.+-.-.+ .+...-...| |+-.+ ...++++-. .+.+..+.+||-.|||+|||..+ .++
T Consensus 483 ~~l~pRg~y-TSGkGsSavGLTayVtrd--~dtkqlVLe-sGALVLSD~GiCCIDEFDKM~dS--------------trS 544 (804)
T KOG0478|consen 483 HRLLPRGVY-TSGKGSSAVGLTAYVTKD--PDTRQLVLE-SGALVLSDNGICCIDEFDKMSDS--------------TRS 544 (804)
T ss_pred HHhCCccee-ecCCccchhcceeeEEec--Cccceeeee-cCcEEEcCCceEEchhhhhhhHH--------------HHH
Confidence 998844322 1211111111 11111 011111111 23344567899999999999877 899
Q ss_pred HHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhh
Q 005663 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~ 507 (684)
.|+++||...++|+..|-+.....+ +-+|+++|..+ +.-.++ .
T Consensus 545 vLhEvMEQQTvSIAKAGII~sLNAR--------~SVLAaANP~~-----------skynp~------------------k 587 (804)
T KOG0478|consen 545 VLHEVMEQQTLSIAKAGIIASLNAR--------CSVLAAANPIR-----------SKYNPN------------------K 587 (804)
T ss_pred HHHHHHHHhhhhHhhcceeeecccc--------ceeeeeecccc-----------ccCCCC------------------C
Confidence 9999999888888877766543333 33444555321 000111 1
Q ss_pred hhhhhccchhHHhcCCChhhhcccceEE-EecccCHHHHHH----HHhchHH------------HHHHHHHHHHhhCCce
Q 005663 508 SLMETVKSSDLIAYGLIPEFVGRFPVLV-SLLALTENQLVQ----VLTEPKN------------ALGKQYRKMFQMNGVK 570 (684)
Q Consensus 508 ~ll~~v~~~dli~~~f~PeLl~R~d~iI-~f~pLs~eel~~----Il~~~l~------------~L~kqy~~~~~~~gv~ 570 (684)
.+.+.+ .++|.|++|||.|. .+++.++.-=.+ |+..+.. .+.+.|.. ...+.+.
T Consensus 588 ~i~eNI--------~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~-yArk~i~ 658 (804)
T KOG0478|consen 588 SIIENI--------NLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIR-YARKNIH 658 (804)
T ss_pred chhhcc--------CCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHH-HHhccCC
Confidence 222223 37899999999875 455555531122 2222111 12333433 2344556
Q ss_pred eecCHHHHHHHHHh
Q 005663 571 LHFTENALRLIAKK 584 (684)
Q Consensus 571 l~iteeAl~~La~~ 584 (684)
..++++|...+...
T Consensus 659 p~l~~ea~~~l~~a 672 (804)
T KOG0478|consen 659 PALSPEASQALIQA 672 (804)
T ss_pred ccccHHHHHHHHHH
Confidence 77889998888765
No 212
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.8e-08 Score=113.51 Aligned_cols=194 Identities=23% Similarity=0.307 Sum_probs=124.7
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhCC----CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 328 LEKSNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 328 ~~~~~vLL~GPpGTGKT~LAkaLA~~l~~----pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
....++||.||+|+|||.||+++++++.. .+..++|+.+.... -+...+.+...|..+-. ..|+||+||+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~----~~PSiIvLDd 502 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALW----YAPSIIVLDD 502 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHHh----hCCcEEEEcc
Confidence 34589999999999999999999998843 47789999886433 12234455555554432 4789999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
+|.+....+..++.-++..++....|.+++.... -+-+.+.||+++.- +.
T Consensus 503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~------------------~~~~~ia~Iat~qe--~q---------- 552 (952)
T KOG0735|consen 503 LDCLASASSNENGQDGVVSERLAAFLNQVIKIYL------------------KRNRKIAVIATGQE--LQ---------- 552 (952)
T ss_pred hhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH------------------ccCcEEEEEEechh--hh----------
Confidence 9999874333322223222233333334443111 01223677877651 00
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
++-..+ +.| .+|+.++.++++...+..+|++..+...
T Consensus 553 ------------------------tl~~~L---------~s~---~~Fq~~~~L~ap~~~~R~~IL~~~~s~~------- 589 (952)
T KOG0735|consen 553 ------------------------TLNPLL---------VSP---LLFQIVIALPAPAVTRRKEILTTIFSKN------- 589 (952)
T ss_pred ------------------------hcChhh---------cCc---cceEEEEecCCcchhHHHHHHHHHHHhh-------
Confidence 000000 112 2889999999999999999998743221
Q ss_pred HhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005663 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 564 ~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
...++.+.++.++.+ +.++-++.|.-.+++++..+..
T Consensus 590 ------~~~~~~~dLd~ls~~--TEGy~~~DL~ifVeRai~~a~l 626 (952)
T KOG0735|consen 590 ------LSDITMDDLDFLSVK--TEGYLATDLVIFVERAIHEAFL 626 (952)
T ss_pred ------hhhhhhHHHHHHHHh--cCCccchhHHHHHHHHHHHHHH
Confidence 123455667777774 6788899999999999998873
No 213
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.84 E-value=1.9e-09 Score=116.66 Aligned_cols=249 Identities=21% Similarity=0.288 Sum_probs=124.2
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
+.+.+-..|+|.+.+|..+.-.+.. +.... ..+..-....-|+||+|.||||||.|.+.+
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~-------~~~~~-------------~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~ 77 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFG-------GVEKN-------------DPDGTRIRGNIHILLVGDPGTGKSQLLKYV 77 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT---------SCC-------------CCT-TEE--S--EEEECSCHHCHHHHHHCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHh-------ccccc-------------cccccccccccceeeccchhhhHHHHHHHH
Confidence 5566677799999999877655531 10000 000011223379999999999999999988
Q ss_pred HHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
++.... -+.++....+..|....-.......-..-..+.+..+.+||++|||+|++... .+++|+
T Consensus 78 ~~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------------~~~~l~ 142 (331)
T PF00493_consen 78 AKLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------------DRDALH 142 (331)
T ss_dssp CCT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------------HHHHHH
T ss_pred HhhCCc-eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch--------------HHHHHH
Confidence 766533 44555554433333222100000000111223455678899999999999887 899999
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
++||.+.+.|...|-. .... .++.+++++|+.. ++++.. ..+.
T Consensus 143 eaMEqq~isi~kagi~-------~~l~-ar~svlaa~NP~~-------g~~~~~----------------------~~~~ 185 (331)
T PF00493_consen 143 EAMEQQTISIAKAGIV-------TTLN-ARCSVLAAANPKF-------GRYDPN----------------------KSLS 185 (331)
T ss_dssp HHHHCSCEEECTSSSE-------EEEE----EEEEEE--TT---------S-TT----------------------S-CG
T ss_pred HHHHcCeeccchhhhc-------cccc-chhhhHHHHhhhh-------hhcchh----------------------hhhH
Confidence 9999777777543321 2233 3455666666421 111100 0011
Q ss_pred hhccchhHHhcCCChhhhcccceEEEe-cccCHHHHHHHHh----chHHH------------------HHHHHHHHHhhC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQVLT----EPKNA------------------LGKQYRKMFQMN 567 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~iI~f-~pLs~eel~~Il~----~~l~~------------------L~kqy~~~~~~~ 567 (684)
+.+ .+.++|++|||.++.+ ++.+++.=..|.. ..... +.++|-...+ .
T Consensus 186 ~ni--------~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar-~ 256 (331)
T PF00493_consen 186 ENI--------NLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYAR-Q 256 (331)
T ss_dssp CCT---------S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHH-H
T ss_pred Hhc--------ccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHH-h
Confidence 111 3779999999987655 5555433333333 22111 1234443332 2
Q ss_pred CceeecCHHHHHHHHHhcCC-----------CCCChHHHHHHHH
Q 005663 568 GVKLHFTENALRLIAKKAIS-----------KNTGARGLRSLLE 600 (684)
Q Consensus 568 gv~l~iteeAl~~La~~a~~-----------~~~GAR~Lr~iIe 600 (684)
.+...++++|.+.|.++-.. ....+|.|+.+|+
T Consensus 257 ~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIR 300 (331)
T PF00493_consen 257 NIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIR 300 (331)
T ss_dssp HC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHH
T ss_pred hcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHH
Confidence 34678999999999875221 1334677777775
No 214
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=3.3e-08 Score=106.99 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=86.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccCCccccchHHHHHHHHhc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (684)
+.+||+||+|+|||++|+++|+.+... +..+....- ...++- ..++++...
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~~~i~i---d~iR~l~~~ 97 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--DKTIKV---DQVRELVSF 97 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--CCCCCH---HHHHHHHHH
Confidence 678999999999999999999988431 111111000 011222 334444333
Q ss_pred ccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeC
Q 005663 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~t 466 (684)
.......+..-|++|||+|+|... .+++||+.||+ ...+++||++
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE---------------------Pp~~~~fiL~ 142 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE---------------------PSGDTVLLLI 142 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC---------------------CCCCeEEEEE
Confidence 221112345679999999999988 99999999993 1234666766
Q ss_pred CCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHH
Q 005663 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~ 546 (684)
++..+ .+.|.+++|.. .+.|.+++.+++.
T Consensus 143 t~~~~--------------------------------------------------~ll~TI~SRc~-~~~~~~~~~~~~~ 171 (328)
T PRK05707 143 SHQPS--------------------------------------------------RLLPTIKSRCQ-QQACPLPSNEESL 171 (328)
T ss_pred ECChh--------------------------------------------------hCcHHHHhhce-eeeCCCcCHHHHH
Confidence 54211 24577888887 5899999999988
Q ss_pred HHHhc
Q 005663 547 QVLTE 551 (684)
Q Consensus 547 ~Il~~ 551 (684)
+.+.+
T Consensus 172 ~~L~~ 176 (328)
T PRK05707 172 QWLQQ 176 (328)
T ss_pred HHHHH
Confidence 87764
No 215
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.69 E-value=3.8e-07 Score=93.59 Aligned_cols=173 Identities=21% Similarity=0.382 Sum_probs=112.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---~ 355 (684)
++|-+..|+.|.+... +..++ .|..||||+|.-||||++|+||+-..+ +
T Consensus 62 l~Gvd~qk~~L~~NT~----~F~~G------------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g 113 (287)
T COG2607 62 LVGVDRQKEALVRNTE----QFAEG------------------------LPANNVLLWGARGTGKSSLVKALLNEYADEG 113 (287)
T ss_pred HhCchHHHHHHHHHHH----HHHcC------------------------CcccceEEecCCCCChHHHHHHHHHHHHhcC
Confidence 6999999998887764 21111 123899999999999999999997666 4
Q ss_pred CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhc
Q 005663 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..++.++-.++.. ...++ +.++..+ .+=|||+|+.-- + .++....+|-.+|||
T Consensus 114 lrLVEV~k~dl~~-------Lp~l~-~~Lr~~~------~kFIlFcDDLSF---e----------~gd~~yK~LKs~LeG 166 (287)
T COG2607 114 LRLVEVDKEDLAT-------LPDLV-ELLRARP------EKFILFCDDLSF---E----------EGDDAYKALKSALEG 166 (287)
T ss_pred CeEEEEcHHHHhh-------HHHHH-HHHhcCC------ceEEEEecCCCC---C----------CCchHHHHHHHHhcC
Confidence 5688888887753 12333 3333333 345999998543 1 122378888889997
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCH-HHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhcc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVK 514 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dL-ek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~ 514 (684)
.+.- ...|++|..|+|...| -+.+.++ .+++ ..+.
T Consensus 167 ~ve~-----------------rP~NVl~YATSNRRHLl~e~~~dn-----~~~~----------------------~eih 202 (287)
T COG2607 167 GVEG-----------------RPANVLFYATSNRRHLLPEDMKDN-----EGST----------------------GEIH 202 (287)
T ss_pred Cccc-----------------CCCeEEEEEecCCcccccHhhhhC-----CCcc----------------------cccC
Confidence 5431 3467888888885432 1111111 1111 1223
Q ss_pred chhHHhcCCChhhhcccceEEEecccCHHHHHHHHhch
Q 005663 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 515 ~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~ 552 (684)
+.+.++..+ .|-.||...+.|.+.+.++...|+...
T Consensus 203 ~~eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 203 PSEAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred hhHHHHHhh--chhhhcceeecccCCCHHHHHHHHHHH
Confidence 333333322 356799999999999999999999863
No 216
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.68 E-value=1.7e-07 Score=103.43 Aligned_cols=71 Identities=15% Similarity=0.296 Sum_probs=56.2
Q ss_pred CChhhhcccce--EEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005663 523 LIPEFVGRFPV--LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 523 f~PeLl~R~d~--iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe 600 (684)
+.|.|.+||.. ++.+.+++.+.+..|+.+.. . ...+.++++++.+|+++ +. .+.|+|..+++
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka-----------~--~~~~~i~~ev~~~la~~-~~--~nvReLegaL~ 288 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA-----------E--DRGIEIPDEVLEFLAKR-LD--RNVRELEGALN 288 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH-----------H--hcCCCCCHHHHHHHHHH-hh--ccHHHHHHHHH
Confidence 45888899954 88999999999999998621 1 12788999999999997 33 35599999999
Q ss_pred HHHHHHHhc
Q 005663 601 NILMDAMYE 609 (684)
Q Consensus 601 ~~l~~al~e 609 (684)
++...+...
T Consensus 289 ~l~~~a~~~ 297 (408)
T COG0593 289 RLDAFALFT 297 (408)
T ss_pred HHHHHHHhc
Confidence 988877653
No 217
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.66 E-value=4.9e-07 Score=100.99 Aligned_cols=123 Identities=21% Similarity=0.286 Sum_probs=68.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccccc------------CCccccchH-HHHHHHHhcccchHHhhc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ------------AGYVGEDVE-SILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~--pfv~v~~s~l~~------------sgyvG~~~~-~~l~~l~~~a~~~v~~a~ 395 (684)
.+++|+||||||||++|+.+|..+.. .+..+++..+.+ +..+|+... ..+.++...+... ...
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~~ 272 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PEK 272 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc--ccC
Confidence 79999999999999999999998843 233333333321 222333211 1222232222110 124
Q ss_pred CCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcc----eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcC
Q 005663 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT----VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (684)
Q Consensus 396 ~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~----~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~d 471 (684)
+.+||||||++...+ .+...|+.+||.. ...+|-.- .....+.+ .-..|+.+|+|.|..|
T Consensus 273 ~~vliIDEINRani~-------------kiFGel~~lLE~~~rg~~~~v~l~y--~e~d~e~f-~iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 273 KYVFIIDEINRANLS-------------KVFGEVMMLMEHDKRGENWSVPLTY--SENDEERF-YVPENVYIIGLMNTAD 336 (459)
T ss_pred CcEEEEehhhccCHH-------------Hhhhhhhhhccccccccccceeeec--cccccccc-cCCCCeEEEEecCccc
Confidence 689999999998755 1677888888821 11111000 00001112 2347899999887543
No 218
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=4e-07 Score=98.14 Aligned_cols=135 Identities=21% Similarity=0.188 Sum_probs=83.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE--EEEecc-----------ccc----cCCccccc-----hHHHHHHHHhccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPF--VIADAT-----------TLT----QAGYVGED-----VESILYKLLTVSD 388 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pf--v~v~~s-----------~l~----~sgyvG~~-----~~~~l~~l~~~a~ 388 (684)
+.+||+||+|+||+++|.++|+.+...- -.-.|. ++. .++..|.. .-..++++.+...
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 6799999999999999999998873210 000000 010 01111100 0123444433221
Q ss_pred chHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCC
Q 005663 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (684)
Q Consensus 389 ~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn 468 (684)
..-.....-|++||++|+|... .+++||+.||+ ...+++||+.++
T Consensus 107 ~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~~~ 151 (319)
T PRK08769 107 LTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEE---------------------PSPGRYLWLISA 151 (319)
T ss_pred hCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhC---------------------CCCCCeEEEEEC
Confidence 1111234569999999999887 99999999993 123455666554
Q ss_pred CcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHH
Q 005663 469 FVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQV 548 (684)
Q Consensus 469 ~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~I 548 (684)
..+ .+.|.+++|.. ++.|.+++.++..+.
T Consensus 152 ~~~--------------------------------------------------~lLpTIrSRCq-~i~~~~~~~~~~~~~ 180 (319)
T PRK08769 152 QPA--------------------------------------------------RLPATIRSRCQ-RLEFKLPPAHEALAW 180 (319)
T ss_pred Chh--------------------------------------------------hCchHHHhhhe-EeeCCCcCHHHHHHH
Confidence 211 24577788887 688999999988877
Q ss_pred Hhc
Q 005663 549 LTE 551 (684)
Q Consensus 549 l~~ 551 (684)
+.+
T Consensus 181 L~~ 183 (319)
T PRK08769 181 LLA 183 (319)
T ss_pred HHH
Confidence 754
No 219
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=5.7e-07 Score=97.23 Aligned_cols=129 Identities=20% Similarity=0.327 Sum_probs=84.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccCCccccchHHHHHHHHhc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (684)
+.+||.||+|+||+++|+++|+.+... +..+... +...+|- ..++++.+.
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~I~i---d~iR~l~~~ 98 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNKDIGV---DQVREINEK 98 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCCCCCH---HHHHHHHHH
Confidence 788999999999999999999988321 1111110 0111222 234444332
Q ss_pred ccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeC
Q 005663 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~t 466 (684)
...........|++||++|+|... .+++||+.||+ ...+++||++
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~ 143 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE---------------------PRPNTYFLLQ 143 (325)
T ss_pred HhhccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 211112345679999999999988 99999999993 2334677776
Q ss_pred CCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHH
Q 005663 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~ 546 (684)
++..+ .+.|.+++|.. .+.|.+++.+++.
T Consensus 144 t~~~~--------------------------------------------------~llpTI~SRC~-~~~~~~~~~~~~~ 172 (325)
T PRK06871 144 ADLSA--------------------------------------------------ALLPTIYSRCQ-TWLIHPPEEQQAL 172 (325)
T ss_pred ECChH--------------------------------------------------hCchHHHhhce-EEeCCCCCHHHHH
Confidence 54210 24567777876 6899999999988
Q ss_pred HHHhc
Q 005663 547 QVLTE 551 (684)
Q Consensus 547 ~Il~~ 551 (684)
+.+..
T Consensus 173 ~~L~~ 177 (325)
T PRK06871 173 DWLQA 177 (325)
T ss_pred HHHHH
Confidence 77764
No 220
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3e-07 Score=106.18 Aligned_cols=147 Identities=17% Similarity=0.328 Sum_probs=103.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
..+||+|+||||||++++++|++++.+++.+||.++.. .-.+.. +..+...+.++.. ..++||||-..|-+.-.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~-~s~~~~-etkl~~~f~~a~~----~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVA-ESASHT-ETKLQAIFSRARR----CSPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhh-cccchh-HHHHHHHHHHHhh----cCceEEEEeccceeeec
Confidence 68899999999999999999999999999999999973 222333 6667777776653 58899999999998754
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcc
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~ 490 (684)
... +.|. +++..+-..|.-. ....+...++||++.+..+
T Consensus 506 ~dg---ged~---rl~~~i~~~ls~e----------------~~~~~~~~~ivv~t~~s~~------------------- 544 (953)
T KOG0736|consen 506 QDG---GEDA---RLLKVIRHLLSNE----------------DFKFSCPPVIVVATTSSIE------------------- 544 (953)
T ss_pred CCC---chhH---HHHHHHHHHHhcc----------------cccCCCCceEEEEeccccc-------------------
Confidence 221 2222 2444444444300 0112334577777655211
Q ss_pred cccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH
Q 005663 491 VRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 491 v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
.+++.+.+-+-..|.++.+++++..+|++-+.+.
T Consensus 545 -------------------------------~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 545 -------------------------------DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred -------------------------------cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 3567777777778999999999999999875543
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.62 E-value=1.3e-07 Score=85.14 Aligned_cols=76 Identities=28% Similarity=0.437 Sum_probs=51.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC---EEEEeccccccCCc------------cccchHHHHHHHHhcccchHHhhc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGY------------VGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p---fv~v~~s~l~~sgy------------vG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
.+++|+||||||||++++.++..+... ++.+++........ ............+..+. ...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR----KLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH----hcC
Confidence 689999999999999999999999765 88888875532111 11111223333333322 122
Q ss_pred CCEEEEccccccchh
Q 005663 396 QGIVYIDEVDKITKK 410 (684)
Q Consensus 396 ~gVLfIDEIdkl~~~ 410 (684)
..+|+|||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 489999999999876
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=3.9e-07 Score=98.88 Aligned_cols=130 Identities=17% Similarity=0.208 Sum_probs=83.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccCCccccchHHHHHHHHhc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (684)
+.+||+||+|+||+++|.++|+.+... +..+....- ...++- ..++++.+.
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~i---dqiR~l~~~ 99 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--KSSLGV---DAVREVTEK 99 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--cccCCH---HHHHHHHHH
Confidence 788999999999999999999988321 111111000 011222 233333322
Q ss_pred ccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeC
Q 005663 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~t 466 (684)
.......+...|++||++|+|... .+++||+.||+ ...+++||+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~ 144 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE---------------------PPENTWFFLA 144 (334)
T ss_pred HhhccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 111111245679999999999988 99999999993 1234667766
Q ss_pred CCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHH
Q 005663 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~ 546 (684)
+...+ .+.|-+++|.. .+.|++++.+++.
T Consensus 145 t~~~~--------------------------------------------------~lLpTIrSRCq-~~~~~~~~~~~~~ 173 (334)
T PRK07993 145 CREPA--------------------------------------------------RLLATLRSRCR-LHYLAPPPEQYAL 173 (334)
T ss_pred ECChh--------------------------------------------------hChHHHHhccc-cccCCCCCHHHHH
Confidence 54211 24567778887 5799999999888
Q ss_pred HHHhc
Q 005663 547 QVLTE 551 (684)
Q Consensus 547 ~Il~~ 551 (684)
+.+.+
T Consensus 174 ~~L~~ 178 (334)
T PRK07993 174 TWLSR 178 (334)
T ss_pred HHHHH
Confidence 77653
No 223
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=4.8e-07 Score=98.39 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=85.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE-------------------------EEEeccccc------------------
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPF-------------------------VIADATTLT------------------ 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pf-------------------------v~v~~s~l~------------------ 367 (684)
+.+||+||+|+||+++|+.+|+.+.... ..+......
T Consensus 22 ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
T PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEG 101 (342)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhcc
Confidence 7889999999999999999999884321 111110000
Q ss_pred ------cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeec
Q 005663 368 ------QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441 (684)
Q Consensus 368 ------~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp 441 (684)
.+..++ -..++++..........+..-|++||++|+|... ..++||+.||+
T Consensus 102 ~~k~~~~~~~I~---idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE------ 158 (342)
T PRK06964 102 GKKTKAPSKEIK---IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLEE------ 158 (342)
T ss_pred cccccccccccC---HHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhcC------
Confidence 000111 1234444433222222345679999999999988 99999999993
Q ss_pred CCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhc
Q 005663 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAY 521 (684)
Q Consensus 442 ~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~ 521 (684)
...+++||++++..+
T Consensus 159 ---------------Pp~~t~fiL~t~~~~-------------------------------------------------- 173 (342)
T PRK06964 159 ---------------PPPGTVFLLVSARID-------------------------------------------------- 173 (342)
T ss_pred ---------------CCcCcEEEEEECChh--------------------------------------------------
Confidence 123466666654211
Q ss_pred CCChhhhcccceEEEecccCHHHHHHHHhc
Q 005663 522 GLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 522 ~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
.+.|.+++|.. .+.|.+++.+++.+.+..
T Consensus 174 ~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 174 RLLPTILSRCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred hCcHHHHhcCE-EEEecCCCHHHHHHHHHH
Confidence 24577788884 788999999998887764
No 224
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=1.1e-06 Score=102.25 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=44.0
Q ss_pred Chhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeec-CHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005663 524 IPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF-TENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 524 ~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~i-teeAl~~La~~a~~~~~GAR~Lr~iIe 600 (684)
.|++++ |+. +|.|+|++..++.+.+...+ ++-.. .......+ +++++..|+.. .++.+|..-+.+|
T Consensus 257 ~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl----~~E~~---~~~~~~~~p~~~~l~~I~~~---s~GDiRsAIn~LQ 325 (637)
T TIGR00602 257 NKEILEEPRVS-NISFNPIAPTIMKKFLNRIV----TIEAK---KNGEKIKVPKKTSVELLCQG---CSGDIRSAINSLQ 325 (637)
T ss_pred CHhHhccccee-EEEeCCCCHHHHHHHHHHHH----Hhhhh---ccccccccCCHHHHHHHHHh---CCChHHHHHHHHH
Confidence 377776 443 79999999999877776532 21111 01112223 67888888873 4566787777777
Q ss_pred HHHH
Q 005663 601 NILM 604 (684)
Q Consensus 601 ~~l~ 604 (684)
-.+.
T Consensus 326 f~~~ 329 (637)
T TIGR00602 326 FSSS 329 (637)
T ss_pred HHHh
Confidence 6554
No 225
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2e-06 Score=92.83 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=83.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC-----------------------EEEEeccccccCCccccchHHHHHHHHhcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP-----------------------FVIADATTLTQAGYVGEDVESILYKLLTVS 387 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p-----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a 387 (684)
+.+||.||.|+||+.+|+++|+.+... |..+.... +...++. ..++++....
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I~v---dqiR~l~~~~ 100 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EGKSITV---EQIRQCNRLA 100 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CCCcCCH---HHHHHHHHHH
Confidence 789999999999999999999988321 22221110 0011221 2334433222
Q ss_pred cchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCC
Q 005663 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (684)
Q Consensus 388 ~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tg 467 (684)
......+...|++||++|+|... .+++||+.||+ ...+++||+.+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t 145 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE---------------------PAPNCLFLLVT 145 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEE
Confidence 11111234579999999999987 99999999993 22346677665
Q ss_pred CCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHH
Q 005663 468 AFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ 547 (684)
Q Consensus 468 n~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~ 547 (684)
+..+ .+.|.+++|.. .+.|.+++.+++.+
T Consensus 146 ~~~~--------------------------------------------------~lLpTI~SRCq-~~~~~~~~~~~~~~ 174 (319)
T PRK06090 146 HNQK--------------------------------------------------RLLPTIVSRCQ-QWVVTPPSTAQAMQ 174 (319)
T ss_pred CChh--------------------------------------------------hChHHHHhcce-eEeCCCCCHHHHHH
Confidence 4211 24466777776 68899999988887
Q ss_pred HHhc
Q 005663 548 VLTE 551 (684)
Q Consensus 548 Il~~ 551 (684)
.+..
T Consensus 175 ~L~~ 178 (319)
T PRK06090 175 WLKG 178 (319)
T ss_pred HHHH
Confidence 7754
No 226
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.48 E-value=2.1e-07 Score=105.09 Aligned_cols=156 Identities=15% Similarity=0.261 Sum_probs=88.9
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
+-+.+...|+|.+.+|+.+.-++.-.-.+ ...+ ..+- ..-.|+||+|.|||||+.+.|.+
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~k--------n~~~---khkv---------RGDinvLL~GDPGTaKSQFLKY~ 502 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPK--------NPGG---KHKV---------RGDINVLLLGDPGTAKSQFLKYA 502 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCcc--------CCCC---Ccee---------ccceeEEEecCCCccHHHHHHHH
Confidence 44455556899999999998888511110 0000 0011 11279999999999999999999
Q ss_pred HHHhCCCEEEEeccccccCCccccchHH-HHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHH
Q 005663 351 ARYVNVPFVIADATTLTQAGYVGEDVES-ILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sgyvG~~~~~-~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
++......+..--..- ..|+..+-... ..+++.- ..+.+..|.+||-+|||+||+... =...+
T Consensus 503 eK~s~RAV~tTGqGAS-avGLTa~v~KdPvtrEWTL-EaGALVLADkGvClIDEFDKMndq--------------DRtSI 566 (854)
T KOG0477|consen 503 EKTSPRAVFTTGQGAS-AVGLTAYVRKDPVTREWTL-EAGALVLADKGVCLIDEFDKMNDQ--------------DRTSI 566 (854)
T ss_pred HhcCcceeEeccCCcc-ccceeEEEeeCCccceeee-ccCeEEEccCceEEeehhhhhccc--------------ccchH
Confidence 9888665443221111 01111111000 0111111 112344578899999999999765 23456
Q ss_pred HHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCc
Q 005663 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 430 L~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~ 470 (684)
-+.||...+.|...|-.+.... .+.+|+|+|..
T Consensus 567 HEAMEQQSISISKAGIVtsLqA--------rctvIAAanPi 599 (854)
T KOG0477|consen 567 HEAMEQQSISISKAGIVTSLQA--------RCTVIAAANPI 599 (854)
T ss_pred HHHHHhcchhhhhhhHHHHHHh--------hhhhheecCCC
Confidence 7778866666544444443333 35666776653
No 227
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.44 E-value=1.6e-06 Score=90.62 Aligned_cols=163 Identities=23% Similarity=0.321 Sum_probs=105.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEecccc---------------------ccCCccccchHHHHHHHHhc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIADATTL---------------------TQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~---pfv~v~~s~l---------------------~~sgyvG~~~~~~l~~l~~~ 386 (684)
.|+|+|||+|+||-+.+.++-+.+.. +-..++...+ + +.-.|....-.+.+++..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEit-PSDaG~~DRvViQellKe 113 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEIT-PSDAGNYDRVVIQELLKE 113 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeC-hhhcCcccHHHHHHHHHH
Confidence 69999999999999999999777732 2111211111 1 233454445566666543
Q ss_pred ccc--hHH---hhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccE
Q 005663 387 SDY--NVA---AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDI 461 (684)
Q Consensus 387 a~~--~v~---~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNi 461 (684)
-.. .++ +..-.|++|.|+|+|..+ .|.+|.+-||.+ .+|+
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkY---------------------s~~~ 158 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKY---------------------SSNC 158 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHH---------------------hcCc
Confidence 211 011 112358999999999988 999999999932 1233
Q ss_pred EEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccC
Q 005663 462 LFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALT 541 (684)
Q Consensus 462 ifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs 541 (684)
-+|+..|.. ..+++++.+|.= .|..+.++
T Consensus 159 RlIl~cns~--------------------------------------------------SriIepIrSRCl-~iRvpaps 187 (351)
T KOG2035|consen 159 RLILVCNST--------------------------------------------------SRIIEPIRSRCL-FIRVPAPS 187 (351)
T ss_pred eEEEEecCc--------------------------------------------------ccchhHHhhhee-EEeCCCCC
Confidence 333333310 035677777875 68899999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHH
Q 005663 542 ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLL 599 (684)
Q Consensus 542 ~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iI 599 (684)
++|+..++...+ +.+ .+.+.++.+..|++.+ -|+||+.+
T Consensus 188 ~eeI~~vl~~v~-----------~kE--~l~lp~~~l~rIa~kS------~~nLRrAl 226 (351)
T KOG2035|consen 188 DEEITSVLSKVL-----------KKE--GLQLPKELLKRIAEKS------NRNLRRAL 226 (351)
T ss_pred HHHHHHHHHHHH-----------HHh--cccCcHHHHHHHHHHh------cccHHHHH
Confidence 999999887632 112 5667899999999963 26677765
No 228
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.43 E-value=8e-07 Score=107.86 Aligned_cols=155 Identities=22% Similarity=0.288 Sum_probs=105.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-CCccccch----HHHHHHHHhcccchHHhhcCCEEEEcccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDV----ESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~-sgyvG~~~----~~~l~~l~~~a~~~v~~a~~gVLfIDEId 405 (684)
.++||-|.||+|||.|..++|+..|..++++|.++-++ -..+|.+. ++.+ .+..++..-+...++.|+|||+.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~WVlLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGWVLLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCEEEeehhh
Confidence 68899999999999999999999999999999987654 12233221 1111 12233333344567899999999
Q ss_pred ccchhhcccccCCCCchHHHHHHHHHHHh-cceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCC
Q 005663 406 KITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~ 484 (684)
-.+.+ |..-|-..|| .+...||+-....+- -.|..+.+|-|+.+ ++.
T Consensus 1622 LaSQS--------------VlEGLNacLDhR~eayIPEld~~f~~--------HpnfrVFAaqNPq~------qgg---- 1669 (4600)
T COG5271 1622 LASQS--------------VLEGLNACLDHRREAYIPELDKTFDV--------HPNFRVFAAQNPQD------QGG---- 1669 (4600)
T ss_pred hhHHH--------------HHHHHHHHHhhccccccccccceeec--------cCCeeeeeecCchh------cCC----
Confidence 98777 9999999998 445555543322221 12444444444221 000
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHH
Q 005663 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN 554 (684)
Q Consensus 485 lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~ 554 (684)
=.++++..|++||. +|.+..|+.+|+..|+.....
T Consensus 1670 ----------------------------------GRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1670 ----------------------------------GRKGLPKSFLNRFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ----------------------------------CcccCCHHHhhhhh-eEEecccccchHHHHHHhhCC
Confidence 02478899999998 688999999999999987543
No 229
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.2e-06 Score=94.67 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=57.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-------------------------CEEEEecccc-ccCC----ccccchHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV-------------------------PFVIADATTL-TQAG----YVGEDVESIL 380 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~-------------------------pfv~v~~s~l-~~sg----yvG~~~~~~l 380 (684)
+.+||+||+|+|||++|+.+|+.+.. .|+.++...- .+.| -++ -..+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~---id~i 98 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK---IDAV 98 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC---HHHH
Confidence 67999999999999999999998732 1333332110 0001 011 1334
Q ss_pred HHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 381 YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 381 ~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+++..........+...|++||+++.+... .+++|++.||
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LE 138 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLE 138 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHH
Confidence 444433322222345679999999999988 9999999998
No 230
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=1.9e-06 Score=80.27 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=46.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~--~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~ 408 (684)
..++|.||.|||||++++.+++.+. ..++.+|+.+....... ... +.+.+.... .....+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~---~~~-~~~~~~~~~----~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA---DPD-LLEYFLELI----KPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh---hhh-hHHHHHHhh----ccCCcEEEEehhhhhc
Confidence 5789999999999999999998876 67788888765421110 000 112111110 0146799999999985
No 231
>PRK08116 hypothetical protein; Validated
Probab=98.35 E-value=1.3e-06 Score=92.03 Aligned_cols=85 Identities=19% Similarity=0.384 Sum_probs=53.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---CCccccchHHHHHHHHhcccchHHhhcCCEEEEccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~---sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.+++|+|++|||||+||.++++.+ +.+++.++..++.. ..|.+.. .....+++.. .....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~------l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRS------LVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHH------hcCCCEEEEecc
Confidence 469999999999999999999887 67788888776542 1111100 0001111111 122359999999
Q ss_pred cccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 405 dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.-... +-.+..|+.+++
T Consensus 188 g~e~~t------------~~~~~~l~~iin 205 (268)
T PRK08116 188 GAERDT------------EWAREKVYNIID 205 (268)
T ss_pred cCCCCC------------HHHHHHHHHHHH
Confidence 653211 127888999998
No 232
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.33 E-value=7.5e-07 Score=94.60 Aligned_cols=90 Identities=27% Similarity=0.362 Sum_probs=56.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc-ccccCCccccchHHHHHHHHhccc--chHHh-hcCCEEEEccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT-TLTQAGYVGEDVESILYKLLTVSD--YNVAA-AQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s-~l~~sgyvG~~~~~~l~~l~~~a~--~~v~~-a~~gVLfIDEIdk 406 (684)
.|.|+|||||||||....+.|+.+..|.-.-++- ++..+.-.|-++-+.-...|.... ..+.. +....++|||+|.
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADa 142 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADA 142 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhH
Confidence 4999999999999999999999986641111111 111122223232222223333222 11111 3456899999999
Q ss_pred cchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+... .|++|.+++|
T Consensus 143 MT~~--------------AQnALRRvie 156 (360)
T KOG0990|consen 143 MTRD--------------AQNALRRVIE 156 (360)
T ss_pred hhHH--------------HHHHHHHHHH
Confidence 9988 9999999888
No 233
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2e-05 Score=88.43 Aligned_cols=92 Identities=28% Similarity=0.395 Sum_probs=63.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchH---HHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVE---SILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~---~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
..+||.||||+|||.||-.+|...+-||+.+-..+- .+|.++. ..+.+.|+.+- +.+-+||++|+|++|
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~----miG~sEsaKc~~i~k~F~DAY----kS~lsiivvDdiErL 610 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED----MIGLSESAKCAHIKKIFEDAY----KSPLSIIVVDDIERL 610 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH----ccCccHHHHHHHHHHHHHHhh----cCcceEEEEcchhhh
Confidence 789999999999999999999999999998765432 3344432 33444454431 234579999999998
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHh
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
..-. .++. ....-+.++|+-+|.
T Consensus 611 iD~v---pIGP-RfSN~vlQaL~VllK 633 (744)
T KOG0741|consen 611 LDYV---PIGP-RFSNLVLQALLVLLK 633 (744)
T ss_pred hccc---ccCc-hhhHHHHHHHHHHhc
Confidence 7531 1121 223348888888886
No 234
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=6.7e-06 Score=91.14 Aligned_cols=206 Identities=19% Similarity=0.269 Sum_probs=125.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.+.|.+.-+..+...+..|.-. +. .+.+.+.|-||||||.+...+-..+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------------~t------------~gSlYVsG~PGtgkt~~l~rvl~~~~~~ 202 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------------NT------------SGSLYVSGQPGTGKTALLSRVLDSLSKS 202 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------------cc------------CcceEeeCCCCcchHHHHHHHHHhhhhh
Confidence 4788888888888888644331 11 2788899999999999887663333
Q ss_pred -CC-CEEEEeccccccCC-------------ccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCC
Q 005663 355 -NV-PFVIADATTLTQAG-------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 355 -~~-pfv~v~~s~l~~sg-------------yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d 419 (684)
.. ..+.+||.++..+. ..+...+......|... .......-++++||+|.|...
T Consensus 203 ~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h--~~q~k~~~llVlDEmD~L~tr--------- 271 (529)
T KOG2227|consen 203 SKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH--TKQSKFMLLLVLDEMDHLITR--------- 271 (529)
T ss_pred cccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH--HhcccceEEEEechhhHHhhc---------
Confidence 22 34889999876421 11211121111222111 011123468999999999865
Q ss_pred CchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCC
Q 005663 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~ 499 (684)
-|..|+.+++ ++ ...++.+++|.-+|.-||.+
T Consensus 272 -----~~~vLy~lFe-------------wp-----~lp~sr~iLiGiANslDlTd------------------------- 303 (529)
T KOG2227|consen 272 -----SQTVLYTLFE-------------WP-----KLPNSRIILIGIANSLDLTD------------------------- 303 (529)
T ss_pred -----ccceeeeehh-------------cc-----cCCcceeeeeeehhhhhHHH-------------------------
Confidence 3556666666 00 22344555555455333211
Q ss_pred CchhhhhhhhhhhccchhHHhcCCChhhhccc---ceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHH
Q 005663 500 VTDAVVTSSLMETVKSSDLIAYGLIPEFVGRF---PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~---d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~itee 576 (684)
+|-|-|-.|. +.++.|+||+.+++.+|+...+... . ...+-+.
T Consensus 304 ----------------------R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~-----------~-t~~~~~~ 349 (529)
T KOG2227|consen 304 ----------------------RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE-----------S-TSIFLNA 349 (529)
T ss_pred ----------------------HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc-----------c-ccccchH
Confidence 1223333333 4589999999999999998743322 1 3345567
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 577 ALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 577 Al~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
|++.+|++.....+..|.+-.+.++++.
T Consensus 350 Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 350 AIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 9999999865555657887777776654
No 235
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.31 E-value=1.9e-05 Score=83.40 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=39.9
Q ss_pred CCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHh
Q 005663 522 GLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 522 ~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~ 584 (684)
+++-+|+.|+- +|.-.|++++|+.+|+...+.+ -.+.++++|++.|..-
T Consensus 341 GiP~D~lDR~l-II~t~py~~~d~~~IL~iRc~E-------------Edv~m~~~A~d~Lt~i 389 (454)
T KOG2680|consen 341 GIPIDLLDRML-IISTQPYTEEDIKKILRIRCQE-------------EDVEMNPDALDLLTKI 389 (454)
T ss_pred CCcHHHhhhhh-eeecccCcHHHHHHHHHhhhhh-------------hccccCHHHHHHHHHh
Confidence 67788888886 7888999999999999863221 1678999999999985
No 236
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.30 E-value=4.9e-06 Score=78.11 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005663 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT 344 (684)
......|+..|++.++||+-|++.|..++..|+.. ..+.+| -.+.|.|+||||||
T Consensus 13 ~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-------------~~p~Kp------------LVlSfHG~tGtGKn 67 (127)
T PF06309_consen 13 KYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-------------PNPRKP------------LVLSFHGWTGTGKN 67 (127)
T ss_pred CCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-------------CCCCCC------------EEEEeecCCCCcHH
Confidence 34567799999999999999999999999755542 122222 56679999999999
Q ss_pred HHHHHHHHHh
Q 005663 345 LLAKTLARYV 354 (684)
Q Consensus 345 ~LAkaLA~~l 354 (684)
.+++.||+.+
T Consensus 68 ~v~~liA~~l 77 (127)
T PF06309_consen 68 FVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHH
Confidence 9999999997
No 237
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.29 E-value=1.7e-06 Score=105.16 Aligned_cols=146 Identities=26% Similarity=0.364 Sum_probs=103.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-CCcccc----ch------HHHHHHHHhcccchHHhhcCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGE----DV------ESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~-sgyvG~----~~------~~~l~~l~~~a~~~v~~a~~gVL 399 (684)
.++|+.||+-+|||.+.+.+|+..+..|+++|-.+-++ ..|+|. +. ++.+-+.++ .+-.|
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR---------~GyWI 959 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR---------RGYWI 959 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh---------cCcEE
Confidence 68999999999999999999999999999999876654 234332 11 122222222 34589
Q ss_pred EEccccccchhhcccccCCCCchHHHHHHHHHHHh-cceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHh
Q 005663 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 400 fIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~ 478 (684)
+|||..-++.. |..+|-++|| .+.+.||+...... .-.|..+.+|-|..
T Consensus 960 VLDELNLApTD--------------VLEaLNRLLDDNRelfIPETqevV~--------PHp~F~lFATQNpp-------- 1009 (4600)
T COG5271 960 VLDELNLAPTD--------------VLEALNRLLDDNRELFIPETQEVVV--------PHPNFRLFATQNPP-------- 1009 (4600)
T ss_pred EeeccccCcHH--------------HHHHHHHhhccccceecCCcceeec--------cCCCeeEEeecCCC--------
Confidence 99999988776 9999999998 56666666554444 44455555554432
Q ss_pred ccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhch
Q 005663 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 479 r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~ 552 (684)
.||+. .+++..+|++||- -+.|.+..++|+..|+...
T Consensus 1010 ------g~YgG------------------------------RK~LSrAFRNRFl-E~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1010 ------GGYGG------------------------------RKGLSRAFRNRFL-EMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred ------ccccc------------------------------hHHHHHHHHhhhH-hhhcccCcHHHHHHHHhcc
Confidence 22321 1246678899996 4789999999999999874
No 238
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.29 E-value=2.8e-06 Score=94.53 Aligned_cols=257 Identities=17% Similarity=0.272 Sum_probs=135.7
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
+.+.+...|+|.+++|+.+.=.+. -+.+++.+-|.. ....-||||.|.|||.|+.|.|-+
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLF-------gGsrK~LpDg~~-------------lRGDINVLLLGDPgtAKSQlLKFv 384 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLF-------GGSRKRLPDGVT-------------LRGDINVLLLGDPGTAKSQLLKFV 384 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhh-------cCccccCCCcce-------------eccceeEEEecCCchhHHHHHHHH
Confidence 344455568999999998876664 222222221111 111279999999999999999888
Q ss_pred HHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHH
Q 005663 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
-+..-...+ .+...-..+|+...-...-...-|....+....|.+||+.|||+||+... -.-++-
T Consensus 385 EkvsPIaVY-TSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~--------------DRVAIH 449 (729)
T KOG0481|consen 385 EKVSPIAVY-TSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED--------------DRVAIH 449 (729)
T ss_pred HhcCceEEE-ecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch--------------hhhHHH
Confidence 665522222 12111111121111000000111112223334578899999999999765 345788
Q ss_pred HHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhh
Q 005663 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll 510 (684)
+.||...+.|...|-.+.. .+.+-+++++|.. .|=..+..
T Consensus 450 EAMEQQTISIAKAGITT~L--------NSRtSVLAAANpv--------------fGRyDd~K------------------ 489 (729)
T KOG0481|consen 450 EAMEQQTISIAKAGITTTL--------NSRTSVLAAANPV--------------FGRYDDTK------------------ 489 (729)
T ss_pred HHHHhhhHHHhhhcceeee--------cchhhhhhhcCCc--------------cccccccC------------------
Confidence 8898777776555543322 2223333444421 01000000
Q ss_pred hhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHH-hchHH----------------------HHHHHHHHHHhhC
Q 005663 511 ETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVL-TEPKN----------------------ALGKQYRKMFQMN 567 (684)
Q Consensus 511 ~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il-~~~l~----------------------~L~kqy~~~~~~~ 567 (684)
.++| .=.|.|-+++|||.++.+.+--.++....+ ++.++ ...++|.... +.
T Consensus 490 ---t~~d--NIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~Yc-R~ 563 (729)
T KOG0481|consen 490 ---TGED--NIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYC-RL 563 (729)
T ss_pred ---Cccc--ccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHH-Hh
Confidence 0000 013789999999998888766555332222 22111 1123333322 23
Q ss_pred CceeecCHHHHHHHHHhcC-----------------CCCCChHHHHHHHHHHHHHHHhcC
Q 005663 568 GVKLHFTENALRLIAKKAI-----------------SKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 568 gv~l~iteeAl~~La~~a~-----------------~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
.+...++++|.+.|..+-. .-+..+|+|+.+|. +.+.+.++
T Consensus 564 kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiR--I~ESLAKm 621 (729)
T KOG0481|consen 564 KCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIR--IAESLAKM 621 (729)
T ss_pred ccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHH--HHHHHHhh
Confidence 4566789999888876522 13445788887775 34444444
No 239
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=8.5e-06 Score=86.76 Aligned_cols=87 Identities=23% Similarity=0.149 Sum_probs=54.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc--------c---cccCC---ccccchHHHHHHHHhcccchHHhhcC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT--------T---LTQAG---YVGEDVESILYKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s--------~---l~~sg---yvG~~~~~~l~~l~~~a~~~v~~a~~ 396 (684)
+.+||+||+|+||+.+|.++|+.+...-..-.|. + +.+.+ .++- ..++++.+........+..
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~i---dqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSI---ETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcH---HHHHHHHHHHhhCccCCCc
Confidence 7889999999999999999999884310001110 1 11111 1222 2233333222111112455
Q ss_pred CEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 397 gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
-|++||++|+|..+ .+++||+.||
T Consensus 97 kv~ii~~ad~mt~~--------------AaNaLLK~LE 120 (290)
T PRK05917 97 KIYIIHEADRMTLD--------------AISAFLKVLE 120 (290)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHhh
Confidence 79999999999988 9999999999
No 240
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.24 E-value=1.4e-05 Score=82.72 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=49.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
..-.+.||+|||||++.|.+|+.+|.+++..+|++-.+ ...+..++... ...++.+.+||++++..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~-----~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGL-----AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence 34578999999999999999999999999999987653 23344444322 134689999999999877
No 241
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.23 E-value=5.8e-06 Score=82.45 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=25.9
Q ss_pred hhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHh
Q 005663 525 PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 525 PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~ 584 (684)
+++.+|+.. +.+.+++.++..+++.+... .. ..+.++++.++.+...
T Consensus 177 ~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~-----------~~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 177 SPLFGRFSH-IELKPLSKEEAREFLKELFK-----------EL-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp STTTT---E-EEE----HHHHHHHHHHHHH-----------CC-------HHHHHHHHHH
T ss_pred Cccccccce-EEEeeCCHHHHHHHHHHHHH-----------Hh-hcccCCHHHHHHHHHH
Confidence 678899997 99999999999998876321 11 1234588888888875
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.22 E-value=3.1e-05 Score=82.58 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=64.2
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
+..-....-||...|++.+...-. +....++. ...++||+|+++.|||++++.+
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~-----Ll~~P~~~---------------------Rmp~lLivG~snnGKT~Ii~rF 81 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEE-----LLEYPKRH---------------------RMPNLLIVGDSNNGKTMIIERF 81 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHH-----HHhCCccc---------------------CCCceEEecCCCCcHHHHHHHH
Confidence 444445567999999998776542 22222111 1268999999999999999999
Q ss_pred HHHh---------CCCEEEEeccccccC-C---------ccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 351 ARYV---------NVPFVIADATTLTQA-G---------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 351 A~~l---------~~pfv~v~~s~l~~s-g---------yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.+.. ..|.+.+.+..-... . +..+.......++....-..+....--+|+|||++.+...
T Consensus 82 ~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG 160 (302)
T PF05621_consen 82 RRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG 160 (302)
T ss_pred HHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc
Confidence 8655 236666666433210 0 0000000001111111112233445679999999997654
No 243
>PRK12377 putative replication protein; Provisional
Probab=98.22 E-value=4.9e-06 Score=86.87 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=53.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---CCcc-ccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYV-GEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~---sgyv-G~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.+++|+||||||||+||.+|++.+ +..++.++..++.. ..|. +......+.. + ....+|+|||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~-l---------~~~dLLiIDD 171 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE-L---------CKVDLLVLDE 171 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH-h---------cCCCEEEEcC
Confidence 689999999999999999999888 45566666666542 1110 0011111111 1 2346999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhc
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
++..... +..++.|..+++.
T Consensus 172 lg~~~~s------------~~~~~~l~~ii~~ 191 (248)
T PRK12377 172 IGIQRET------------KNEQVVLNQIIDR 191 (248)
T ss_pred CCCCCCC------------HHHHHHHHHHHHH
Confidence 9765322 1168899999983
No 244
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.19 E-value=3.2e-06 Score=72.97 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=58.0
Q ss_pred cCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005663 540 LTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 540 Ls~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
|+.+++.+|+...++.+.++ +..+++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+++..-
T Consensus 1 L~~~~l~~I~~~~l~~l~~~----l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il 69 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNER----LKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAIL 69 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHH----HHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH----HHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999977666554 4558999999999999999999999999999999999999999887543
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.17 E-value=1.3e-06 Score=80.24 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=28.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--------CCCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV--------NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l--------~~pfv~v~~s~l~ 367 (684)
..++++||||+|||++++.+++.+ ..+++.+++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 688999999999999999998887 6677888876543
No 246
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.15 E-value=1.1e-05 Score=85.39 Aligned_cols=201 Identities=16% Similarity=0.259 Sum_probs=102.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC-CC--EEEEeccccccCCccccchHHHHHHHHhcc----cc---hHHhhcCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN-VP--FVIADATTLTQAGYVGEDVESILYKLLTVS----DY---NVAAAQQGIVY 400 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~-~p--fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a----~~---~v~~a~~gVLf 400 (684)
.++||+||+|||||.+++.+-+.+. .. ...++++..+. ...+...++.. .+ .....+..|+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 7999999999999999988765553 23 23455554331 23333333221 11 11123557999
Q ss_pred EccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhcc
Q 005663 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 401 IDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~ 480 (684)
||++..-.++. .....+.+.|.++|| .|+..+.... ......++.||++.+...
T Consensus 106 iDDlN~p~~d~--------ygtq~~iElLRQ~i~--------~~g~yd~~~~-~~~~i~~i~~vaa~~p~~--------- 159 (272)
T PF12775_consen 106 IDDLNMPQPDK--------YGTQPPIELLRQLID--------YGGFYDRKKL-EWKSIEDIQFVAAMNPTG--------- 159 (272)
T ss_dssp EETTT-S---T--------TS--HHHHHHHHHHH--------CSEEECTTTT-EEEEECSEEEEEEESSTT---------
T ss_pred ecccCCCCCCC--------CCCcCHHHHHHHHHH--------hcCcccCCCc-EEEEEeeeEEEEecCCCC---------
Confidence 99999865541 112235666777778 3444443322 346777888888755211
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHH
Q 005663 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 481 ~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy 560 (684)
| + ..+.|-|+..+. ++.++.++.+.+..|....+....+..
T Consensus 160 -----G-----r----------------------------~~is~R~~r~f~-i~~~~~p~~~sl~~If~~il~~~l~~~ 200 (272)
T PF12775_consen 160 -----G-----R----------------------------NPISPRFLRHFN-ILNIPYPSDESLNTIFSSILQSHLKNG 200 (272)
T ss_dssp -----T-----------------------------------SHHHHHHTTEE-EEE----TCCHHHHHHHHHHHHHTCHT
T ss_pred -----C-----C----------------------------CCCChHHhhheE-EEEecCCChHHHHHHHHHHHhhhcccC
Confidence 0 0 012345555555 788999999999999887544332210
Q ss_pred HHHHhh--CCceeecCH---HHHHHHHHhcCC------CCCChHHHHHHHHHHHHHH
Q 005663 561 RKMFQM--NGVKLHFTE---NALRLIAKKAIS------KNTGARGLRSLLENILMDA 606 (684)
Q Consensus 561 ~~~~~~--~gv~l~ite---eAl~~La~~a~~------~~~GAR~Lr~iIe~~l~~a 606 (684)
.+.. .+..-.+.. +..+.+.+.-.+ --++.|+|-++++-++...
T Consensus 201 --~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~~~ 255 (272)
T PF12775_consen 201 --GFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILLAS 255 (272)
T ss_dssp --TSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHhcC
Confidence 0100 000001111 222233322111 1346799999999987643
No 247
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=5e-05 Score=81.41 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=55.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-----------C--EEEEeccccccCCccccchHHHHHHHHhcccchH-HhhcC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV-----------P--FVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQ 396 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~-----------p--fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v-~~a~~ 396 (684)
+.+||+|+.|.||+.+|+.+++.+.. | +..++.. .+-++ -..++.+.+..+... +....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~~i~---vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DKDLS---KSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CCcCC---HHHHHHHHHHhccCCcccCCc
Confidence 67789999999999999999988722 1 2222210 00111 134445544433221 22467
Q ss_pred CEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 397 gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
-|++||++|++... .+++||+.||
T Consensus 92 KvvII~~~e~m~~~--------------a~NaLLK~LE 115 (299)
T PRK07132 92 KILIIKNIEKTSNS--------------LLNALLKTIE 115 (299)
T ss_pred eEEEEecccccCHH--------------HHHHHHHHhh
Confidence 89999999999877 8999999999
No 248
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.10 E-value=8.4e-06 Score=90.79 Aligned_cols=137 Identities=23% Similarity=0.352 Sum_probs=83.9
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCccccc-ccceEEEEccCCCcHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVEL-EKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLL~GPpGTGKT~LAka 349 (684)
|.+.+...|.|.+.+|+.|.-.+.- ...+ .+ .++.++ ..-||+|.|.||+.|+.|.+.
T Consensus 336 La~SiAPEIyGheDVKKaLLLlLVG--------gvd~------~~-------~dGMKIRGdINicLmGDPGVAKSQLLky 394 (721)
T KOG0482|consen 336 LAASIAPEIYGHEDVKKALLLLLVG--------GVDK------SP-------GDGMKIRGDINICLMGDPGVAKSQLLKY 394 (721)
T ss_pred HHHhhchhhccchHHHHHHHHHhhC--------CCCC------CC-------CCCceeecceeEEecCCCchhHHHHHHH
Confidence 5566667799999999999887741 0000 00 011111 127999999999999999999
Q ss_pred HHHHhCCCEEEEeccccccCCccccchHHHHHHH----HhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHH
Q 005663 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKL----LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 350 LA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l----~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~v 425 (684)
+.+..-...+..-.. +.-+|-. .+..+.. +....+.+..|.+||-.|||+||+... =
T Consensus 395 i~rlapRgvYTTGrG----SSGVGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------------D 455 (721)
T KOG0482|consen 395 ISRLAPRGVYTTGRG----SSGVGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------------D 455 (721)
T ss_pred HHhcCcccceecCCC----CCccccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------h
Confidence 998774433322211 1111111 1111110 111123345678899999999999876 4
Q ss_pred HHHHHHHHhcceeeecCCCccc
Q 005663 426 QQALLKMLEGTVVNVPEKGARK 447 (684)
Q Consensus 426 q~~LL~~LEg~~v~Vp~~G~~~ 447 (684)
..++-++||...+.|...|-.+
T Consensus 456 RtAIHEVMEQQTISIaKAGI~T 477 (721)
T KOG0482|consen 456 RTAIHEVMEQQTISIAKAGINT 477 (721)
T ss_pred hHHHHHHHHhhhhhhhhhcccc
Confidence 5678899997777776555444
No 249
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.09 E-value=0.00012 Score=82.85 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=83.7
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005663 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaL 350 (684)
|.+.|...|.|.+.+|+.+.-.+.-..-+. +.+ ...-..--|+||+|.|-|.|+.|.|.+
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~-----------L~N---------GshlRGDINiLlvGDPSvAKSQLLRyV 354 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKN-----------LEN---------GSHLRGDINILLVGDPSVAKSQLLRYV 354 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceec-----------cCC---------CceeccceeEEEecCchHHHHHHHHHH
Confidence 455567779999999998887664111110 000 001111279999999999999999998
Q ss_pred HHHhCCCEEEEec----ccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCch
Q 005663 351 ARYVNVPFVIADA----TTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 351 A~~l~~pfv~v~~----s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~ 422 (684)
-+..-......-. -.|+. -.-.| +..+ -. +....|..||++|||+||++.-
T Consensus 355 LntAplAI~TTGRGSSGVGLTAAVTtD~eTG---ERRL---EA---GAMVLADRGVVCIDEFDKMsDi------------ 413 (818)
T KOG0479|consen 355 LNTAPLAIATTGRGSSGVGLTAAVTTDQETG---ERRL---EA---GAMVLADRGVVCIDEFDKMSDI------------ 413 (818)
T ss_pred HhcccccccccCCCCCCccceeEEeeccccc---hhhh---hc---CceEEccCceEEehhcccccch------------
Confidence 6544211111000 01110 00011 1111 11 1122467899999999999765
Q ss_pred HHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCC
Q 005663 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~ 469 (684)
=.-++-++||...|+|...|--..... .|-+++++|.
T Consensus 414 --DRvAIHEVMEQqtVTIaKAGIHasLNA--------RCSVlAAANP 450 (818)
T KOG0479|consen 414 --DRVAIHEVMEQQTVTIAKAGIHASLNA--------RCSVLAAANP 450 (818)
T ss_pred --hHHHHHHHHhcceEEeEeccchhhhcc--------ceeeeeecCc
Confidence 356789999977777765553332222 2555666553
No 250
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=3.2e-05 Score=82.51 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=52.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE--------EEeccccc---cCC--cc---ccc-hHHHHHHHHhcccchHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV--------IADATTLT---QAG--YV---GED-VESILYKLLTVSDYNVAA 393 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv--------~v~~s~l~---~sg--yv---G~~-~~~~l~~l~~~a~~~v~~ 393 (684)
+.+||+|| +||+++|+.+|+.+...-. .-+|..+. .++ ++ |.. .-..++++..........
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~ 102 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYE 102 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCccc
Confidence 78899996 6899999999988732100 00011110 011 11 110 013344443322211123
Q ss_pred hcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 394 a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+...|++||++|+|... ..++||+.||
T Consensus 103 ~~~kV~II~~ad~m~~~--------------AaNaLLKtLE 129 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN--------------AANSLLKVIE 129 (290)
T ss_pred CCcEEEEeehhhhcCHH--------------HHHHHHHHhc
Confidence 45679999999999987 9999999999
No 251
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.03 E-value=4.4e-05 Score=88.18 Aligned_cols=181 Identities=22% Similarity=0.332 Sum_probs=115.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----------CCCEEEEeccccccC---------CccccchH-----HHHHHHHhc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQA---------GYVGEDVE-----SILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l----------~~pfv~v~~s~l~~s---------gyvG~~~~-----~~l~~l~~~ 386 (684)
+-+.+.|-||||||.+++.+-+.| ...|+.+|+..++.+ .+.|+... ..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 467899999999999998886655 235899999887641 12222211 111111110
Q ss_pred ccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeC
Q 005663 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~t 466 (684)
.-.....+||+|||.|.|... -|+.|..+++ +. ...-+.+++|+-
T Consensus 503 ---~k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fd-------------Wp-----t~~~sKLvvi~I 547 (767)
T KOG1514|consen 503 ---PKPKRSTTVVLIDELDILVTR--------------SQDVLYNIFD-------------WP-----TLKNSKLVVIAI 547 (767)
T ss_pred ---CCCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhc-------------CC-----cCCCCceEEEEe
Confidence 012456789999999999876 5788888887 11 112234556665
Q ss_pred CCCcCH-HHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCHHH
Q 005663 467 GAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTENQ 544 (684)
Q Consensus 467 gn~~dL-ek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~ee 544 (684)
+|-.|| +++ |.+-.-+|++. -+.|.|++.++
T Consensus 548 aNTmdlPEr~-----------------------------------------------l~nrvsSRlg~tRi~F~pYth~q 580 (767)
T KOG1514|consen 548 ANTMDLPERL-----------------------------------------------LMNRVSSRLGLTRICFQPYTHEQ 580 (767)
T ss_pred cccccCHHHH-----------------------------------------------hccchhhhccceeeecCCCCHHH
Confidence 554442 222 22233346654 48999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 545 LVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 545 l~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
+.+|+.-.+..+ -.|..+|++.++++-..-.+.||-...+++++..-+-
T Consensus 581 Lq~Ii~~RL~~~--------------~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~ 629 (767)
T KOG1514|consen 581 LQEIISARLKGL--------------DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAE 629 (767)
T ss_pred HHHHHHHhhcch--------------hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 999997643222 2478899999998755555568888788877765443
No 252
>PRK08181 transposase; Validated
Probab=98.01 E-value=6.6e-06 Score=86.87 Aligned_cols=86 Identities=22% Similarity=0.358 Sum_probs=53.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdk 406 (684)
..+++|+||||||||+||.+++..+ +...+.+++.++... +............+.. ....-+|+|||++.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~~------l~~~dLLIIDDlg~ 178 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIAK------LDKFDLLILDDLAY 178 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHHH------HhcCCEEEEecccc
Confidence 3689999999999999999998766 556666666665421 0000000001111111 12346999999998
Q ss_pred cchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.... +..+..|+++++
T Consensus 179 ~~~~------------~~~~~~Lf~lin 194 (269)
T PRK08181 179 VTKD------------QAETSVLFELIS 194 (269)
T ss_pred ccCC------------HHHHHHHHHHHH
Confidence 7554 125778999997
No 253
>PRK06526 transposase; Provisional
Probab=97.98 E-value=5.9e-06 Score=86.53 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=51.6
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEId 405 (684)
.+.+++|+||||||||+||.+|+..+ +.....+++.++.+.-..... ...+...+.. .....+|+|||++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-~~~~~~~l~~------l~~~dlLIIDD~g 169 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-AGRLQAELVK------LGRYPLLIVDEVG 169 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-cCcHHHHHHH------hccCCEEEEcccc
Confidence 34799999999999999999998766 444444444444310000000 0011111111 1234699999999
Q ss_pred ccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.+.... ..++.|.++++
T Consensus 170 ~~~~~~------------~~~~~L~~li~ 186 (254)
T PRK06526 170 YIPFEP------------EAANLFFQLVS 186 (254)
T ss_pred cCCCCH------------HHHHHHHHHHH
Confidence 876431 16678888887
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.97 E-value=7e-06 Score=89.03 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=52.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccC---Cccccc--hHHHHHHHHhcccchHHhhcCCEEEEc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGED--VESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~s---gyvG~~--~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
.+++|+||||||||+||.++|+.+ +..++.+++.++... ...... ....+.. + ..--+|+||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~-l---------~~~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL-L---------INCDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH-h---------ccCCEEEEe
Confidence 689999999999999999999887 556677777665420 000000 0000111 1 122589999
Q ss_pred cccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 403 EIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|++..... +..++.|+.+++
T Consensus 254 DlG~e~~t------------~~~~~~Lf~iin 273 (329)
T PRK06835 254 DLGTEKIT------------EFSKSELFNLIN 273 (329)
T ss_pred ccCCCCCC------------HHHHHHHHHHHH
Confidence 99886433 126788888887
No 255
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.94 E-value=1.2e-05 Score=79.74 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=51.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---CCccccchHHHHHHHHhcccchHHhhcCCEEEEccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~---sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.+++|+||||||||.||.++++.+ +.+...++..++.. ..+........+..+ . .--+|+|||+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l-~---------~~dlLilDDl 117 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL-K---------RVDLLILDDL 117 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH-H---------TSSCEEEETC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc-c---------cccEeccccc
Confidence 789999999999999999998776 66777788877642 111111112222222 1 2358999999
Q ss_pred cccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 405 dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
...... +...+.|.++++
T Consensus 118 G~~~~~------------~~~~~~l~~ii~ 135 (178)
T PF01695_consen 118 GYEPLS------------EWEAELLFEIID 135 (178)
T ss_dssp TSS---------------HHHHHCTHHHHH
T ss_pred ceeeec------------ccccccchhhhh
Confidence 875433 226677888887
No 256
>PRK06921 hypothetical protein; Provisional
Probab=97.93 E-value=1.3e-05 Score=84.47 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=28.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l----~~pfv~v~~s~l 366 (684)
.+++|+||||||||+||.+||+.+ +...+.++..++
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 689999999999999999999876 344555555443
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.90 E-value=2.4e-05 Score=81.90 Aligned_cols=70 Identities=27% Similarity=0.445 Sum_probs=47.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---CCcc-ccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYV-GEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~---sgyv-G~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.+++|+||||||||.||-||+..+ +.....+..+++.. ..+- |.. +..+...+. .--+|+|||
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~-~~~l~~~l~---------~~dlLIiDD 175 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRL-EEKLLRELK---------KVDLLIIDD 175 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCch-HHHHHHHhh---------cCCEEEEec
Confidence 699999999999999999998887 56677777776642 1111 111 222223222 225999999
Q ss_pred ccccchh
Q 005663 404 VDKITKK 410 (684)
Q Consensus 404 Idkl~~~ 410 (684)
+......
T Consensus 176 lG~~~~~ 182 (254)
T COG1484 176 IGYEPFS 182 (254)
T ss_pred ccCccCC
Confidence 9986554
No 258
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.0001 Score=77.33 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=54.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc------ccc---cC---------CccccchHHHHHHHHhcccc-h
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT------TLT---QA---------GYVGEDVESILYKLLTVSDY-N 390 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s------~l~---~s---------gyvG~~~~~~l~~l~~~a~~-~ 390 (684)
++.+||+||+|+||..+|.++|+.+-..--.-.|. .+. .+ .-++. ..++++.+.... .
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~i---d~ir~l~~~l~~~s 83 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKK---EDALSIINKLNRPS 83 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCH---HHHHHHHHHHccCc
Confidence 47899999999999999999998873210000011 110 00 11222 223333322111 1
Q ss_pred HHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 391 v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
++.+..-|++||++|+|... ..++||+.||
T Consensus 84 ~e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LE 113 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIE 113 (261)
T ss_pred hhcCCCEEEEeccHhhhCHH--------------HHHHHHHhhc
Confidence 12234679999999999988 9999999999
No 259
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.88 E-value=4.3e-05 Score=79.70 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=53.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---CCcc--ccchHHHHHHHHhcccchHHhhcCCEEEEc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYV--GEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~---sgyv--G~~~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
.+++|+|+||||||+||.+|+..+ +...+.++..++.. ..+. ....+..+.. + ....+|+||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~-l---------~~~dlLvID 169 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLND-L---------SNVDLLVID 169 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHH-h---------ccCCEEEEe
Confidence 589999999999999999999888 56677777766642 0010 0111111111 1 134699999
Q ss_pred cccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 403 EIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|++..... +-.++.|..+++
T Consensus 170 Dig~~~~s------------~~~~~~l~~Ii~ 189 (244)
T PRK07952 170 EIGVQTES------------RYEKVIINQIVD 189 (244)
T ss_pred CCCCCCCC------------HHHHHHHHHHHH
Confidence 99886432 114567888887
No 260
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.84 E-value=5.7e-05 Score=68.51 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=47.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~ 412 (684)
|.|+||||+|||++|+.|++.+...+-......+ |........+.. ...+.++++||+......-
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v----y~~~~~~~~w~g----------Y~~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV----YTRNPGDKFWDG----------YQGQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE----EeCCCccchhhc----------cCCCcEEEEeecCcccccc-
Confidence 4799999999999999998877432210000010 000000111100 0234699999998865430
Q ss_pred ccccCCCCchHHHHHHHHHHHhcceeee
Q 005663 413 SLNISRDVSGEGVQQALLKMLEGTVVNV 440 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~V 440 (684)
.......|+++++-..+.+
T Consensus 66 ---------~~~~~~~l~~l~s~~~~~~ 84 (107)
T PF00910_consen 66 ---------NYSDESELIRLISSNPFQP 84 (107)
T ss_pred ---------chHHHHHHHHHHhcCCccc
Confidence 1126778888888554443
No 261
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.83 E-value=0.00052 Score=78.85 Aligned_cols=94 Identities=19% Similarity=0.377 Sum_probs=55.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe-cccccc-----CCccccc--------hHHHHHHH-Hhcccch-H---
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD-ATTLTQ-----AGYVGED--------VESILYKL-LTVSDYN-V--- 391 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~-~s~l~~-----sgyvG~~--------~~~~l~~l-~~~a~~~-v--- 391 (684)
..+||+||||||||+++++||++++..+.... ...+.. .+|.+.. ....+.++ +..+.+. +
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 56789999999999999999999988776543 223211 1122110 01122222 2222221 1
Q ss_pred ---HhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 392 ---AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 392 ---~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
....+.||+|||+-.+... +. +..++.|.+.+.
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~--------~~--~~f~~~L~~~l~ 161 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR--------DT--SRFREALRQYLR 161 (519)
T ss_pred CCCcCCCceEEEeeccccccch--------hH--HHHHHHHHHHHH
Confidence 1235679999998765443 11 447777888776
No 262
>PF05729 NACHT: NACHT domain
Probab=97.78 E-value=0.00021 Score=67.65 Aligned_cols=78 Identities=18% Similarity=0.331 Sum_probs=43.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCC--------C-EEEEeccccccCCccccchHHHHHHHHhccc--------chHHhh
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNV--------P-FVIADATTLTQAGYVGEDVESILYKLLTVSD--------YNVAAA 394 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~--------p-fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~--------~~v~~a 394 (684)
.++++|+||+|||++++.++..+.. + .+...+.+....... ......+........ ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 4789999999999999999877611 1 233444444321111 011112211111110 112234
Q ss_pred cCCEEEEccccccchh
Q 005663 395 QQGIVYIDEVDKITKK 410 (684)
Q Consensus 395 ~~gVLfIDEIdkl~~~ 410 (684)
...+|+||-+|.+...
T Consensus 81 ~~~llilDglDE~~~~ 96 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQ 96 (166)
T ss_pred CceEEEEechHhcccc
Confidence 5678999999998874
No 263
>PRK09183 transposase/IS protein; Provisional
Probab=97.78 E-value=3.2e-05 Score=81.19 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=52.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdk 406 (684)
..+++|+||||||||+||.+++..+ +.....+++.++.. .+........+...+... .....+++|||++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~-~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdlg~ 175 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL-QLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEIGY 175 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH-HHHHHHHCCcHHHHHHHH-----hcCCCEEEEccccc
Confidence 4689999999999999999997664 44555566555431 010000000111111110 12446999999987
Q ss_pred cchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
..... ..++.|+++++
T Consensus 176 ~~~~~------------~~~~~lf~li~ 191 (259)
T PRK09183 176 LPFSQ------------EEANLFFQVIA 191 (259)
T ss_pred CCCCh------------HHHHHHHHHHH
Confidence 65431 15677888887
No 264
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.74 E-value=0.00064 Score=72.47 Aligned_cols=138 Identities=18% Similarity=0.257 Sum_probs=79.3
Q ss_pred cCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHH
Q 005663 395 QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEK 474 (684)
Q Consensus 395 ~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek 474 (684)
.+-||+|||+|++.++ -...+|+.+. ...+..|++||++....-+.+
T Consensus 172 ~~iViiIDdLDR~~~~--------------~i~~~l~~ik-------------------~~~~~~~i~~Il~~D~~~l~~ 218 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE--------------EIVELLEAIK-------------------LLLDFPNIIFILAFDPEILEK 218 (325)
T ss_pred ceEEEEEcchhcCCcH--------------HHHHHHHHHH-------------------HhcCCCCeEEEEEecHHHHHH
Confidence 4568999999999877 5566666665 134568899999876554555
Q ss_pred HHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhccc-ceEEEecccCHHHHHHHHhchH
Q 005663 475 TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRF-PVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 475 ~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~-d~iI~f~pLs~eel~~Il~~~l 553 (684)
.+....... + .+.. ..+++.++ +..+.+++++..++.+.+...+
T Consensus 219 ai~~~~~~~---~--------------~~~~------------------~~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~ 263 (325)
T PF07693_consen 219 AIEKNYGEG---F--------------DEID------------------GREYLEKIIQVPFSLPPPSPSDLERYLNELL 263 (325)
T ss_pred HHHhhcCcc---c--------------cccc------------------HHHHHHhhcCeEEEeCCCCHHHHHHHHHHHH
Confidence 554331100 0 0001 13344444 6678999999999988888754
Q ss_pred HHHHHHHHHHHhhCCceeec----------CHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 554 NALGKQYRKMFQMNGVKLHF----------TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 554 ~~L~kqy~~~~~~~gv~l~i----------teeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+.+....... ...-.+ ....+..+....-....+.|.+++++..+..
T Consensus 264 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~~~ 320 (325)
T PF07693_consen 264 ESLESETNES----DDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSLSL 320 (325)
T ss_pred HHhhhccccc----cchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Confidence 4443332211 100001 1233444444312234578999999987654
No 265
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.64 E-value=9.6e-05 Score=79.52 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=31.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~ 367 (684)
.+++|+||+|||||+||.++|+.+ +.+...+.+.++.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI 196 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence 689999999999999999999888 5666666766553
No 266
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.58 E-value=7.8e-05 Score=94.25 Aligned_cols=115 Identities=25% Similarity=0.305 Sum_probs=74.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-CCccccchHHHHHH-HHhcccchHH-hhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILYK-LLTVSDYNVA-AAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~-sgyvG~~~~~~l~~-l~~~a~~~v~-~a~~gVLfIDEIdkl 407 (684)
.++||.||+++|||.+++-+|+..+..+++++-.+-++ ..|+|........+ .++.. -.+. .-.+..+++||+...
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg-~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREG-VLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehh-HHHHHHHhCCEEEecccccc
Confidence 58999999999999999999999999999998876553 33444110000000 00000 0111 225678999999998
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhc-ceeeecCCCcccCCCCCceEEeecc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEG-TVVNVPEKGARKHPRGDNIQIDTKD 460 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg-~~v~Vp~~G~~~~~~~~~i~IdtsN 460 (684)
+.. +..+|.++++. +.+.+|+.........+.+...+.|
T Consensus 520 ~~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn 559 (1856)
T KOG1808|consen 520 PHD--------------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQN 559 (1856)
T ss_pred chH--------------HHHHHHhhhhhhccccccccceeeccCcchhhhhhcc
Confidence 776 99999999984 7776665554444443333333333
No 267
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.45 E-value=0.00012 Score=66.64 Aligned_cols=31 Identities=45% Similarity=0.761 Sum_probs=26.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
|++.||||+||||+|+.||+.++.+++..|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999877665544
No 268
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.40 E-value=0.00023 Score=69.02 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC---EEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p---fv~v~~s~l 366 (684)
..++++|++|+|||++.+.+...+..+ ++.+++...
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 789999999999999999887666333 777777655
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.32 E-value=0.0004 Score=65.06 Aligned_cols=32 Identities=50% Similarity=0.639 Sum_probs=25.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
++++||||+|||++++.++..+ +.+.+.+++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999999998776 4555555554
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.31 E-value=0.00023 Score=68.46 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=29.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
+..++|+|+||||||++|+.||+.++.+++..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 478999999999999999999999998887443
No 271
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00037 Score=79.43 Aligned_cols=96 Identities=33% Similarity=0.566 Sum_probs=75.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccch
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~ 409 (684)
+..++++||||+|||+++++++.. +..+..++..... .+|.|.. +..+...+..+.. ..++++++||++.+.+
T Consensus 18 ~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~ii~~d~~~~~~~ 90 (494)
T COG0464 18 PKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEK----LAPSIIFIDEIDALAP 90 (494)
T ss_pred CCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHH----hCCCeEeechhhhccc
Confidence 488999999999999999999998 6666667777666 6788887 5667777766543 3559999999999999
Q ss_pred hhcccccCCCCchHHHHHHHHHHHhc
Q 005663 410 KAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+.. ........+.+.|+..|++
T Consensus 91 ~~~~---~~~~~~~~v~~~l~~~~d~ 113 (494)
T COG0464 91 KRSS---DQGEVERRVVAQLLALMDG 113 (494)
T ss_pred Cccc---cccchhhHHHHHHHHhccc
Confidence 8664 2333445689999999984
No 272
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.006 Score=63.80 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=46.7
Q ss_pred hhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCC-ceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 525 PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNG-VKLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 525 PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~g-v~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
.++..|++.-+.++|++.++....+...+ +..+ ..--++++++.++.... ++.-++|..++
T Consensus 185 ~e~~~R~~ir~~l~P~~~~~t~~yl~~~L-----------e~a~~~~~l~~~~a~~~i~~~s-------qg~P~lin~~~ 246 (269)
T COG3267 185 RELEQRIDIRIELPPLTEAETGLYLRHRL-----------EGAGLPEPLFSDDALLLIHEAS-------QGIPRLINNLA 246 (269)
T ss_pred HhhhheEEEEEecCCcChHHHHHHHHHHH-----------hccCCCcccCChhHHHHHHHHh-------ccchHHHHHHH
Confidence 56788999779999999998888776522 1111 24458999999998863 23455666666
Q ss_pred HHHHhcC
Q 005663 604 MDAMYEI 610 (684)
Q Consensus 604 ~~al~e~ 610 (684)
..|+-..
T Consensus 247 ~~Al~~a 253 (269)
T COG3267 247 TLALDAA 253 (269)
T ss_pred HHHHHHH
Confidence 6665444
No 273
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.21 E-value=0.0047 Score=67.47 Aligned_cols=58 Identities=29% Similarity=0.353 Sum_probs=41.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC-C
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-V 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~-~ 356 (684)
.+.|.++++.++...+. ...++ .+..+..++|.||+|+|||++++.|.+.+. .
T Consensus 62 ~~~G~~~~i~~lV~~fk----~AA~g----------------------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFK----SAAQG----------------------LEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccCcHHHHHHHHHHHH----HHHhc----------------------cCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 47999999999988664 11111 122347889999999999999999987762 2
Q ss_pred CEEEE
Q 005663 357 PFVIA 361 (684)
Q Consensus 357 pfv~v 361 (684)
+++.+
T Consensus 116 ~~Y~l 120 (358)
T PF08298_consen 116 PIYTL 120 (358)
T ss_pred EEEEe
Confidence 44444
No 274
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.18 E-value=0.00072 Score=66.64 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh
Q 005663 332 NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998887
No 275
>PHA00729 NTP-binding motif containing protein
Probab=97.18 E-value=0.00064 Score=70.10 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.+++|+|+||||||++|.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999875
No 276
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.16 E-value=0.0015 Score=65.78 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=48.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccC---CccccchHHHHHHHHhcccch-H----HhhcCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYN-V----AAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~s---gyvG~~~~~~l~~l~~~a~~~-v----~~a~~gVL 399 (684)
..+++.||||||||++++.+.+.+ +..++.+..+.-... .-.|.. ...+..++...... . ......+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEE
Confidence 467889999999999999997766 445555554432100 000000 01112222211110 0 02345799
Q ss_pred EEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 400 fIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+|||+..+... ....|++.++
T Consensus 98 iVDEasmv~~~--------------~~~~ll~~~~ 118 (196)
T PF13604_consen 98 IVDEASMVDSR--------------QLARLLRLAK 118 (196)
T ss_dssp EESSGGG-BHH--------------HHHHHHHHS-
T ss_pred EEecccccCHH--------------HHHHHHHHHH
Confidence 99999999876 6777777765
No 277
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.00042 Score=67.98 Aligned_cols=33 Identities=42% Similarity=0.696 Sum_probs=29.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
..|+++||||+||||+|+.|++.++.+++.+|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999999887765
No 278
>PRK13947 shikimate kinase; Provisional
Probab=97.10 E-value=0.00048 Score=66.69 Aligned_cols=32 Identities=38% Similarity=0.596 Sum_probs=29.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
+|+|+|+||||||++|+.||+.++.+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 78999999999999999999999999976553
No 279
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.09 E-value=0.0022 Score=70.72 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.4
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
++.++.|+|++|+|||.|+-++...+..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 3589999999999999999999877743
No 280
>PRK07261 topology modulation protein; Provisional
Probab=97.09 E-value=0.00099 Score=65.52 Aligned_cols=43 Identities=30% Similarity=0.531 Sum_probs=34.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGED 375 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~ 375 (684)
.++++|+||+|||++|+.|++.++.+.+..|.-... ++|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence 478999999999999999999999998887765443 4454444
No 281
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.05 E-value=0.00073 Score=77.80 Aligned_cols=60 Identities=27% Similarity=0.382 Sum_probs=44.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-CC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-~~ 356 (684)
.++|++++|+.+...+.....++ . .....++|+||||+|||+||+.|++.+ ..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl----~----------------------~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGL----E----------------------EKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhc----C----------------------CCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 36999999999998874222211 0 112688999999999999999999888 34
Q ss_pred CEEEEec
Q 005663 357 PFVIADA 363 (684)
Q Consensus 357 pfv~v~~ 363 (684)
|++.+..
T Consensus 131 ~~Y~~kg 137 (644)
T PRK15455 131 PIYVLKA 137 (644)
T ss_pred cceeecC
Confidence 6666654
No 282
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.04 E-value=0.0091 Score=65.52 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=48.6
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
|...|.+.+..++.+...+-+ .+ ..-|.++.|+|-+|||||.+.+++-+.+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~-----------------~~------------~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGN-----------------NS------------CTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred cccCccchHHHHHHHHHHhCC-----------------CC------------cccceeEEEeccCCCchhHHHHHHHhhc
Confidence 445577888888888877631 00 0124788999999999999999999999
Q ss_pred CCCEEEEecccc
Q 005663 355 NVPFVIADATTL 366 (684)
Q Consensus 355 ~~pfv~v~~s~l 366 (684)
+.+.+.++|-+.
T Consensus 55 n~~~vw~n~~ec 66 (438)
T KOG2543|consen 55 NLENVWLNCVEC 66 (438)
T ss_pred CCcceeeehHHh
Confidence 999999998654
No 283
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0027 Score=76.49 Aligned_cols=76 Identities=26% Similarity=0.359 Sum_probs=55.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----------CCCEEEEecccccc-CCccccchHHHHHHHHhcccchHHhhcCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l----------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVL 399 (684)
.|-+|+|+||+|||.+++-+|+.. +..++.++...+.. +.+.|+- +..+..+...... ...+-||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~-E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF-EERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH-HHHHHHHHHHHhc---CCCcEEE
Confidence 577999999999999999998777 34577778776542 4455654 6677777654321 2345689
Q ss_pred EEccccccchh
Q 005663 400 YIDEVDKITKK 410 (684)
Q Consensus 400 fIDEIdkl~~~ 410 (684)
||||++-+...
T Consensus 285 figelh~lvg~ 295 (898)
T KOG1051|consen 285 FLGELHWLVGS 295 (898)
T ss_pred EecceeeeecC
Confidence 99999999876
No 284
>PRK03839 putative kinase; Provisional
Probab=97.01 E-value=0.00062 Score=66.83 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=27.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
.++|+|+||+|||++|+.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4789999999999999999999999886544
No 285
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.00 E-value=0.00067 Score=64.13 Aligned_cols=31 Identities=45% Similarity=0.760 Sum_probs=27.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
+++|+|+||+|||++|+.||+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998887544
No 286
>PRK00625 shikimate kinase; Provisional
Probab=96.99 E-value=0.00069 Score=67.06 Aligned_cols=31 Identities=39% Similarity=0.683 Sum_probs=28.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
+|+|+|.||+|||++++.+|+.++.+|+.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 6899999999999999999999999997655
No 287
>PRK10536 hypothetical protein; Provisional
Probab=96.95 E-value=0.0041 Score=65.40 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..+++.||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999873
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.95 E-value=0.1 Score=59.15 Aligned_cols=38 Identities=39% Similarity=0.558 Sum_probs=30.2
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
+|..++|+|++|+|||++|..+|..+ +.....+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 35889999999999999999998877 455666666544
No 289
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.93 E-value=0.0027 Score=70.92 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=60.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH--h-CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY--V-NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~--l-~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
.|+++.||+|||||++|.+++.. + ..-| +++ ...+..+-....+. -+..-+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG~f--~T~-------------a~Lf~~L~~~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISGGT--ITV-------------AKLFYNISTRQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcCCc--CcH-------------HHHHHHHHHHHHhh--hccCCEEEEEcCCCC
Confidence 79999999999999999999765 2 1111 112 22222222111111 123469999999997
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~ 470 (684)
+-.+. ...++.|-..|+.+... . +. ..-..+.-+++-||..
T Consensus 273 p~~~~----------~~~v~imK~yMesg~fs--------R--G~--~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 273 KFAKP----------KELIGILKNYMESGSFT--------R--GD--ETKSSDASFVFLGNVP 313 (449)
T ss_pred cCCch----------HHHHHHHHHHHHhCcee--------c--cc--eeeeeeeEEEEEcccC
Confidence 76522 12788888989833322 1 11 2234667777878764
No 290
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.90 E-value=0.0018 Score=67.83 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
..++|+||+|+|||++++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 68899999999999999999987754
No 291
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.85 E-value=0.00063 Score=63.50 Aligned_cols=30 Identities=47% Similarity=0.729 Sum_probs=24.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s 364 (684)
++++||||+|||++|+.+++.++ ...++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D 31 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQD 31 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHH
Confidence 68999999999999999999987 3444443
No 292
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.84 E-value=0.014 Score=66.57 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
..+||+||+|||||+..+.|+++++..++...
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 67789999999999999999999998877655
No 293
>PRK14532 adenylate kinase; Provisional
Probab=96.83 E-value=0.001 Score=65.67 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=27.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
+++|.||||+|||++|+.||+.++.+++ +..++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHH
Confidence 5899999999999999999999986654 55444
No 294
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.0072 Score=62.47 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=46.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--------CCCEEEEecc-ccccCCccccchHHHHH--HHHhcc------cchHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV--------NVPFVIADAT-TLTQAGYVGEDVESILY--KLLTVS------DYNVAA 393 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l--------~~pfv~v~~s-~l~~sgyvG~~~~~~l~--~l~~~a------~~~v~~ 393 (684)
.+.|+.||||||||++.+-||+.+ ......+|-. ++. .+..|...-..-+ +.+... ...++.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa-g~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA-GCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh-ccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 788999999999999999998877 2345666654 333 2333332111100 000000 012445
Q ss_pred hcCCEEEEcccccc
Q 005663 394 AQQGIVYIDEVDKI 407 (684)
Q Consensus 394 a~~gVLfIDEIdkl 407 (684)
..|-|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 67889999999884
No 295
>PRK13948 shikimate kinase; Provisional
Probab=96.83 E-value=0.0013 Score=65.74 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.3
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 328 LEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 328 ~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
.++.+++|+|.+|+|||++++.+|+.++.+|+-.|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34589999999999999999999999999998555
No 296
>PRK06217 hypothetical protein; Validated
Probab=96.82 E-value=0.0012 Score=65.36 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=28.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
..|+|.|+||+|||++|++|++.++.+++..|.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 358999999999999999999999988765553
No 297
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.75 E-value=0.0021 Score=71.23 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=47.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC-----EEEEecccc---------------ccCCccccchHHHHH---HHHhcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP-----FVIADATTL---------------TQAGYVGEDVESILY---KLLTVS 387 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p-----fv~v~~s~l---------------~~sgyvG~~~~~~l~---~l~~~a 387 (684)
...+++||||+|||+||+.|++..... .+.+...+. ..+. +-+..+..++ ..+..+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st-~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST-FDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC-CCCCHHHHHHHHHHHHHHH
Confidence 567999999999999999998877432 111111111 0010 1111122222 334444
Q ss_pred cchHHhhcCCEEEEccccccchh
Q 005663 388 DYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 388 ~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.+..+.....+||||||+++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHH
Confidence 44455567789999999999875
No 298
>PRK13949 shikimate kinase; Provisional
Probab=96.75 E-value=0.0013 Score=64.69 Aligned_cols=32 Identities=44% Similarity=0.682 Sum_probs=29.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
.+++|+|+||+|||++++.+|+.++.+++..|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999887655
No 299
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0047 Score=60.62 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.+.|+||+|||++++.+++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 688999999999999999999888
No 300
>PRK14530 adenylate kinase; Provisional
Probab=96.71 E-value=0.0016 Score=65.95 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..++|+||||+|||++|+.||+.++.+++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 478999999999999999999999877653
No 301
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.70 E-value=0.0015 Score=60.98 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=27.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
+.+.|+||+|||++|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 579999999999999999999999987665
No 302
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.69 E-value=0.15 Score=57.57 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=29.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
+..++|+|++|+||||++..||..+ +.....+++..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 4788999999999999999998777 556666666443
No 303
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.68 E-value=0.0015 Score=63.90 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
++++||||+|||++|+.||+.++. ..++++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 689999999999999999999975 455665543
No 304
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.68 E-value=0.002 Score=66.36 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.0
Q ss_pred cceEEEEccCCCcHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA 351 (684)
+..+||||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3679999999999999999986
No 305
>PRK14531 adenylate kinase; Provisional
Probab=96.66 E-value=0.0019 Score=63.98 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..++++||||+|||++++.||+.++.+++ ++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~ 36 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDL 36 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccH
Confidence 46899999999999999999999987664 45444
No 306
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.65 E-value=0.0016 Score=61.75 Aligned_cols=27 Identities=44% Similarity=0.840 Sum_probs=24.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
++|.|+||+|||++|+.+++.++.+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 589999999999999999999877654
No 307
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0016 Score=63.06 Aligned_cols=36 Identities=33% Similarity=0.652 Sum_probs=30.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
..++|++|-||||||++|+.||..++.+++ +++++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i--~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYI--EISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceE--ehhhHH
Confidence 379999999999999999999999988775 555554
No 308
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.64 E-value=0.015 Score=61.03 Aligned_cols=34 Identities=41% Similarity=0.747 Sum_probs=25.9
Q ss_pred CCCcccccccceE-EEEccCCCcHHHHHHHHHHHh
Q 005663 321 VDDDTVELEKSNI-LLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~~~~~v-LL~GPpGTGKT~LAkaLA~~l 354 (684)
.++.++.++.+-+ +|+||+||||||+.|.|-+..
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 3444555555544 599999999999999998776
No 309
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.63 E-value=0.0039 Score=60.83 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=23.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
+|+.||||||||++|..++... +.+.+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999998885543 455555554
No 310
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.63 E-value=0.018 Score=64.38 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=43.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~ 408 (684)
.++++||-+||||++++.+.+.+-..++.++.-++.... ......+......... ....||||||+.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~~~~~~-----~~~yifLDEIq~v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYIELKER-----EKSYIFLDEIQNVP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHHHhhcc-----CCceEEEecccCch
Confidence 789999999999999999988885555555555543111 1111222222222111 44699999999964
No 311
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0016 Score=64.52 Aligned_cols=32 Identities=41% Similarity=0.778 Sum_probs=29.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
.++.|+|++|+|||++.+++|+.++.+|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 58999999999999999999999999997444
No 312
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.62 E-value=0.0021 Score=63.32 Aligned_cols=33 Identities=39% Similarity=0.738 Sum_probs=30.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
.+++|+|++|+|||++++.+|+.++.+++..|.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 689999999999999999999999999876664
No 313
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.61 E-value=0.0017 Score=63.83 Aligned_cols=32 Identities=44% Similarity=0.727 Sum_probs=26.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
|+++||||+|||++|+.||+.++.+++ +..++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHH
Confidence 789999999999999999999876654 44444
No 314
>PRK14974 cell division protein FtsY; Provisional
Probab=96.60 E-value=0.011 Score=64.57 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=26.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
+..++|+||||+|||+++..+|..+ +.....+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4788999999999999998888776 3444445544
No 315
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.60 E-value=0.0022 Score=62.19 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=29.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
.+++|+|++|+|||++|+.+|+.++.+|+..|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 468899999999999999999999999875543
No 316
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.59 E-value=0.0016 Score=62.70 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=24.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
++|+||||+|||++|+.+++.++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986664
No 317
>PRK13946 shikimate kinase; Provisional
Probab=96.58 E-value=0.002 Score=63.90 Aligned_cols=34 Identities=35% Similarity=0.691 Sum_probs=30.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
+..|+|+|.+|+|||++++.||+.++.+|+..|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 3789999999999999999999999999976653
No 318
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.58 E-value=0.0049 Score=60.25 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=32.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~ 367 (684)
..|+|+|.||+|||++|+++.+.+ +.+.+.+|...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 678999999999999999998888 6788999988775
No 319
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.57 E-value=0.01 Score=59.87 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=21.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++|+||+|+|||+.+-.||..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 678999999999999988887666
No 320
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.56 E-value=0.0019 Score=63.30 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s 364 (684)
..++|.|+||+|||++|+.|++.++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 5789999999999999999999988777755543
No 321
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.52 E-value=0.0054 Score=68.26 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
..++++||||+|||++++.+++.+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc
Confidence 67899999999999999999987643
No 322
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.02 Score=59.83 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=25.3
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++.++.+.+. -+.|+||+|||||||.+.||...
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444555554 45599999999999999999776
No 323
>PRK04296 thymidine kinase; Provisional
Probab=96.50 E-value=0.0082 Score=60.04 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=23.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v 361 (684)
.-.+++||+|+|||++|..++..+ +...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 456899999999999998887665 4444444
No 324
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.44 E-value=0.0028 Score=65.52 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..++|.||||+|||++|+.||+.++.+++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is 36 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHIN 36 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 468999999999999999999999877653
No 325
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.44 E-value=0.031 Score=56.24 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC-CCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN-VPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~-~pfv~v~~s 364 (684)
..|.|.|++|+|||||+++|++.++ ..+..++..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 6888999999999999999999883 234444443
No 326
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.0084 Score=59.70 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=47.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc--CCccccchHHHHHHHHhcccchHHhhcCCEEEEc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ--AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~--sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
..++|+|.+|+|||++|.++.+.| +...+.+|...+.. ..-.|.+.+.........+.-.-..+..|+|.|=
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviv 100 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIV 100 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 688999999999999999999888 77788889877743 1123445455544443332211112445666654
No 327
>PRK06762 hypothetical protein; Provisional
Probab=96.41 E-value=0.0032 Score=60.79 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=28.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
.-++|.|+||+|||++|+.+++.++...+.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 578899999999999999999998655655554433
No 328
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.41 E-value=0.0086 Score=57.53 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=27.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
++|.|+||+|||++|+.+++.+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999998 555566665433
No 329
>PHA02774 E1; Provisional
Probab=96.40 E-value=0.024 Score=65.67 Aligned_cols=76 Identities=18% Similarity=0.391 Sum_probs=50.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE-EeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccch
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI-ADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~-v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~ 409 (684)
..++|+||||||||++|-+|++.++...+. +|..+ .-| +.. + ...-+++|||+-.-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw--------Lqp-l---------~d~ki~vlDD~t~~~w 493 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW--------LQP-L---------ADAKIALLDDATHPCW 493 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc--------cch-h---------ccCCEEEEecCcchHH
Confidence 689999999999999999999999755533 55421 001 111 1 1224899999832211
Q ss_pred hhcccccCCCCchHHHHHHHHHHHhcceeee
Q 005663 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~V 440 (684)
. =+...|..+|+|..+.|
T Consensus 494 ~-------------y~d~~Lrn~LdG~~v~l 511 (613)
T PHA02774 494 D-------------YIDTYLRNALDGNPVSI 511 (613)
T ss_pred H-------------HHHHHHHHHcCCCccee
Confidence 1 15667888999887665
No 330
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.02 Score=63.71 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=22.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+..++|+||+|+|||+++..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 331
>PHA02624 large T antigen; Provisional
Probab=96.39 E-value=0.024 Score=65.90 Aligned_cols=87 Identities=26% Similarity=0.313 Sum_probs=54.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
..+||+||||||||+++.+|.+.++...+.++++.-. ....... ....-+++||++-.-.-.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k---------s~FwL~p---------l~D~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK---------LNFELGC---------AIDQFMVVFEDVKGQPAD 493 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch---------hHHHhhh---------hhhceEEEeeeccccccc
Confidence 6888999999999999999999997777777754321 0111111 123358999998644332
Q ss_pred hcccccCCCCchHHH--HHHHHHHHhcc-eeee
Q 005663 411 AESLNISRDVSGEGV--QQALLKMLEGT-VVNV 440 (684)
Q Consensus 411 r~~~~~~~d~~~e~v--q~~LL~~LEg~-~v~V 440 (684)
.... ..|..+ ..-|...|||. .|.+
T Consensus 494 ~~~L-----p~G~~~dNl~~lRn~LDG~V~v~l 521 (647)
T PHA02624 494 NKDL-----PSGQGMNNLDNLRDYLDGSVPVNL 521 (647)
T ss_pred cccC-----CcccccchhhHHHhhcCCCCcccc
Confidence 1110 011113 37788999987 5543
No 332
>PRK06547 hypothetical protein; Provisional
Probab=96.36 E-value=0.0035 Score=61.98 Aligned_cols=32 Identities=41% Similarity=0.516 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
..|++.|++|+|||++|+.|++.++.+++..|
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 67788899999999999999999887776544
No 333
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.32 E-value=0.0068 Score=65.27 Aligned_cols=32 Identities=41% Similarity=0.664 Sum_probs=29.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
..|+|+|++|+|||++++.+|+.++.+|+..|
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 78999999999999999999999999998544
No 334
>PRK14528 adenylate kinase; Provisional
Probab=96.31 E-value=0.0039 Score=62.11 Aligned_cols=30 Identities=40% Similarity=0.722 Sum_probs=26.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..+++.||||+|||++|+.|++.++.+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 368999999999999999999999877643
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.28 E-value=0.0047 Score=60.35 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~ 365 (684)
..+++.||||+|||++|+.|++.++.+. +++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~ 36 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGD 36 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHH
Confidence 5778999999999999999999987554 44443
No 336
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.28 E-value=0.014 Score=59.61 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
+.-++|+||+|+|||++.+.++.
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 35688999999999999999964
No 337
>PRK02496 adk adenylate kinase; Provisional
Probab=96.26 E-value=0.0038 Score=61.45 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=25.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
.+++.||||+|||++|+.||+.++.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 58899999999999999999999876543
No 338
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.25 E-value=0.0036 Score=56.83 Aligned_cols=22 Identities=50% Similarity=0.607 Sum_probs=20.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l 354 (684)
|+|.|+||||||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 339
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.25 E-value=0.0099 Score=65.46 Aligned_cols=25 Identities=36% Similarity=0.809 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.++.+.||.|||||++.++|...+.
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhc
Confidence 7889999999999999999987773
No 340
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.21 E-value=0.013 Score=58.91 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
+-+++.||+|+|||+++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999987774
No 341
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.15 E-value=0.0047 Score=62.43 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=24.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
|+++||||+|||++|+.||+.++.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876654
No 342
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.15 E-value=0.041 Score=57.46 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..+.|+|++|+|||+||+.+++.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEEcCCcCCcceeeeecccc
Confidence 78889999999999999999877
No 343
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.0047 Score=60.63 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=25.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
+-+.|||||||||+|+.||+.++.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999863
No 344
>PLN02200 adenylate kinase family protein
Probab=96.13 E-value=0.0055 Score=63.50 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=29.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
+..+++.|+||+|||++|+.||+.++.+ .++++++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 3678899999999999999999998764 46666554
No 345
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0055 Score=61.04 Aligned_cols=33 Identities=39% Similarity=0.673 Sum_probs=26.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
.+++.||||+||||+|+.||+.+ ++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHH
Confidence 57999999999999999999995 4455565444
No 346
>PF14516 AAA_35: AAA-like domain
Probab=96.11 E-value=0.1 Score=56.80 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=30.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~ 367 (684)
..+.+.||..+|||++...+.+.+ +...+.+|+..+.
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 678899999999999998886665 6677888887653
No 347
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.08 E-value=0.0072 Score=58.35 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=22.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
|.|+|++|||||+|++.|++. +.+++.--+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~ 34 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREI 34 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHH
Confidence 689999999999999999988 777663333333
No 348
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.06 E-value=0.0056 Score=62.06 Aligned_cols=33 Identities=30% Similarity=0.639 Sum_probs=27.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
.|+++||||+|||++|+.||+.++.+.+ ++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI--STGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--ECCcc
Confidence 4799999999999999999999986554 45444
No 349
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.01 E-value=0.024 Score=60.03 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=53.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccch
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~ 409 (684)
.+|.||+|.+|+||++++|..|-..+..++.+..+ .+|--.+....+..++..+.. ..++.+++|+|-+-...
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~----~~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d~qi~~~ 103 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEIT----KGYSIKDFKEDLKKALQKAGI---KGKPTVFLLTDSQIVDE 103 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTS----TTTHHHHHHHHHHHHHHHHHC---S-S-EEEEEECCCSSSC
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEee----CCcCHHHHHHHHHHHHHHHhc---cCCCeEEEecCcccchH
Confidence 38999999999999999998888888887776653 223222222334444433322 24567888888665433
Q ss_pred hhcccccCCCCchHHHHHHHHHHHh
Q 005663 410 KAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
. ....+..+|.
T Consensus 104 ~--------------fLe~in~LL~ 114 (268)
T PF12780_consen 104 S--------------FLEDINSLLS 114 (268)
T ss_dssp H--------------HHHHHHHHHH
T ss_pred h--------------HHHHHHHHHh
Confidence 3 6677777776
No 350
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.053 Score=55.75 Aligned_cols=105 Identities=21% Similarity=0.366 Sum_probs=57.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
--|.+.|++|+|||++|+.|+..++.+.+.+=+- -.|.-.. +.... .....+=.|-.+.+.-.
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~----D~YYk~~-~~~~~------------~~~~~~n~d~p~A~D~d 71 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISL----DDYYKDQ-SHLPF------------EERNKINYDHPEAFDLD 71 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeec----cccccch-hhcCH------------hhcCCcCccChhhhcHH
Confidence 4566899999999999999999998662222111 1122111 11100 11122333433333322
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCC-CceEEeeccEEEEe
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG-DNIQIDTKDILFIC 465 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~-~~i~IdtsNiifI~ 465 (684)
-....|..+++|..+.+|.-...++.+. +.+.+.-..+++|-
T Consensus 72 -------------Ll~~~L~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvE 114 (218)
T COG0572 72 -------------LLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVE 114 (218)
T ss_pred -------------HHHHHHHHHHcCCcccccccchhcccccCCccccCCCcEEEEe
Confidence 1667777888899888875433333322 34445555565553
No 351
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.95 E-value=0.023 Score=60.01 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=58.5
Q ss_pred CCCCcccccccceE-EEEccCCCcHHHHHHHHHHHhCCC--EEEEeccccccCCccccchHHHHHHHHhccc--------
Q 005663 320 GVDDDTVELEKSNI-LLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQAGYVGEDVESILYKLLTVSD-------- 388 (684)
Q Consensus 320 ~~~~~~~~~~~~~v-LL~GPpGTGKT~LAkaLA~~l~~p--fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~-------- 388 (684)
+.++..+.+...-+ =|+|++||||||++|++.+..... -+..+..++.... .+.....+.+++....
T Consensus 28 avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--~~~~~~~v~elL~~Vgl~~~~~~r 105 (268)
T COG4608 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--KEERRERVLELLEKVGLPEEFLYR 105 (268)
T ss_pred EecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--hhHHHHHHHHHHHHhCCCHHHhhc
Confidence 34556666666544 499999999999999999877432 2334443332111 1111223333333210
Q ss_pred --c----------h---HHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 389 --Y----------N---VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 389 --~----------~---v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
. . .-.-.+.+|+.||.-.+... + +|.+.|.+|.
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv----------S---iqaqIlnLL~ 153 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV----------S---VQAQILNLLK 153 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch----------h---HHHHHHHHHH
Confidence 0 0 11346789999998876543 1 7777777775
No 352
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.94 E-value=0.045 Score=68.98 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
..+-++|++|+|||+||+++++.+...
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 577899999999999999998777443
No 353
>PRK14527 adenylate kinase; Provisional
Probab=95.92 E-value=0.0062 Score=60.57 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=25.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..++++||||+|||++|+.|++.++.+.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 67899999999999999999998876543
No 354
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.041 Score=61.00 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=22.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
...++|+||+|+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999998654
No 355
>PF13245 AAA_19: Part of AAA domain
Probab=95.90 E-value=0.013 Score=50.39 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=18.5
Q ss_pred ceEEEEccCCCcHH-HHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKT-LLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT-~LAkaLA~~l 354 (684)
..+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667999999999 6666666666
No 356
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.89 E-value=0.013 Score=49.06 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 357
>PRK04182 cytidylate kinase; Provisional
Probab=95.87 E-value=0.0084 Score=58.02 Aligned_cols=29 Identities=41% Similarity=0.582 Sum_probs=26.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
.|+|.|++|+|||++|+.||+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999988753
No 358
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.87 E-value=0.014 Score=60.43 Aligned_cols=34 Identities=32% Similarity=0.585 Sum_probs=27.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
|+|+|+||+|||++|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999988 355666655434
No 359
>PRK04040 adenylate kinase; Provisional
Probab=95.85 E-value=0.0089 Score=59.91 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..++++|+||||||++++.+++.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999983
No 360
>PTZ00301 uridine kinase; Provisional
Probab=95.83 E-value=0.042 Score=56.19 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.-|.+.|+||+|||++|+.|++.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 456799999999999999998776
No 361
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.83 E-value=0.0082 Score=63.59 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-~~pfv~v~~s~l 366 (684)
.-++|.|+||||||++|+.|++.+ +.. .++...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~--~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAV--NVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCE--EEeccHH
Confidence 467899999999999999999998 444 4444433
No 362
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.83 E-value=0.026 Score=56.01 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=17.9
Q ss_pred EEEEccCCCcHHHHHHHHH
Q 005663 333 ILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA 351 (684)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5899999999999999997
No 363
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.83 E-value=0.02 Score=68.57 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=50.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---C--CCEEEEecccccc---CCccccchHHHHHHHHhcccch-----HH-hhcC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---N--VPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYN-----VA-AAQQ 396 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~--~pfv~v~~s~l~~---sgyvG~~~~~~l~~l~~~a~~~-----v~-~a~~ 396 (684)
..+++.|+||||||++++++.+.+ + .+++.+..+.-.. ....|.. ...+..++...... .. ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~-a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLT-ASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCc-cccHHHHhhccCCccchhhhhccccC
Confidence 578899999999999999997665 3 2333222221110 1111221 12223333221110 00 1245
Q ss_pred CEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 397 gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.+|++||+..+... ....|++.+.
T Consensus 418 ~llIvDEaSMvd~~--------------~~~~Ll~~~~ 441 (720)
T TIGR01448 418 DLLIVDESSMMDTW--------------LALSLLAALP 441 (720)
T ss_pred CEEEEeccccCCHH--------------HHHHHHHhCC
Confidence 79999999999776 7777777664
No 364
>PRK08233 hypothetical protein; Provisional
Probab=95.82 E-value=0.011 Score=57.32 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC-CCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN-VPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~-~pfv~v~~s 364 (684)
.-|.+.|+||+||||+|+.|++.++ .+.+..|..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 5678899999999999999999985 444444443
No 365
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.82 E-value=0.026 Score=56.52 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=29.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
..+.|+|++|+|||++|+.|++.+ +...+.++...+
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 688899999999999999999987 344666766444
No 366
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.80 E-value=0.021 Score=57.26 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=22.1
Q ss_pred ccccccc--eEEEEccCCCcHHHHHHHHH
Q 005663 325 TVELEKS--NILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 325 ~~~~~~~--~vLL~GPpGTGKT~LAkaLA 351 (684)
++.+.+. .++|+||.|+|||++.+.++
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3444443 59999999999999999997
No 367
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.79 E-value=0.015 Score=58.22 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~ 365 (684)
..++++||||+|||++|..++... +.+.+.++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 677899999999999999887544 55677777754
No 368
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=95.77 E-value=0.022 Score=69.02 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=56.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchH------HHHHHHHhcc-cchHHhhcCCEEEEccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVE------SILYKLLTVS-DYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~------~~l~~l~~~a-~~~v~~a~~gVLfIDEI 404 (684)
.+|++||||+|||+.|.+.|+.++..++..|+++.. +++...... ..+...+... ...-......||++||+
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R-Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~dev 437 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR-SKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEV 437 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc-cccHHHhhhhccccccchhhhhcccccccccccceeEEEEecc
Confidence 468999999999999999999999999999998775 332221110 0011111000 00000122459999999
Q ss_pred cccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 405 dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|-+... .++...+|-.+..
T Consensus 438 D~~~~~-----------dRg~v~~l~~l~~ 456 (871)
T KOG1968|consen 438 DGMFGE-----------DRGGVSKLSSLCK 456 (871)
T ss_pred ccccch-----------hhhhHHHHHHHHH
Confidence 998763 1226666766665
No 369
>PLN02674 adenylate kinase
Probab=95.75 E-value=0.0098 Score=62.20 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=28.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..++|.||||+||+++|+.||+.++.+. +++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdl 65 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDM 65 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHH
Confidence 6789999999999999999999997654 555555
No 370
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.73 E-value=0.022 Score=58.39 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
..++++|+||+|||++|..++... +.+.+.++.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 778899999999999999995432 455555554
No 371
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.72 E-value=0.0088 Score=57.05 Aligned_cols=31 Identities=39% Similarity=0.548 Sum_probs=25.5
Q ss_pred EEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 335 LMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 335 L~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
+.||||+|||++|+.||+.++. ..+++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999865 556665553
No 372
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.72 E-value=0.12 Score=54.96 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=27.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh----C-CCEEEEeccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV----N-VPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l----~-~pfv~v~~s~ 365 (684)
+..++|+||+|+|||+++..||..+ + .....+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4688999999999999999998765 2 4555555544
No 373
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.71 E-value=0.0088 Score=59.27 Aligned_cols=29 Identities=38% Similarity=0.568 Sum_probs=25.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..++|+||+|+|||++++.|+..++.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 47889999999999999999998876543
No 374
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.068 Score=62.97 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=32.8
Q ss_pred CCCccccccc-ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccc
Q 005663 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (684)
Q Consensus 321 ~~~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l~~--pfv~v~~s~l 366 (684)
+++..+.++| ..+.|+||+|.|||++|..|-+.+.. --+.+|..++
T Consensus 484 lk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 484 LKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPI 532 (716)
T ss_pred hcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeeh
Confidence 4556666666 56779999999999999999877732 1344555544
No 375
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.66 E-value=0.011 Score=56.87 Aligned_cols=29 Identities=41% Similarity=0.622 Sum_probs=25.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
.|.+.|++|+|||++|+.+++.++.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 47899999999999999999999888653
No 376
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.66 E-value=0.017 Score=62.69 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=30.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
..++|+|+||+|||+|++.|++.++.+++.--..++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 5789999999999999999999999888655544443
No 377
>PRK14526 adenylate kinase; Provisional
Probab=95.64 E-value=0.011 Score=60.30 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=27.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
.++|+||||+|||++|+.||+.++.++ +++.++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChH
Confidence 478999999999999999999987655 445544
No 378
>PRK06696 uridine kinase; Validated
Probab=95.64 E-value=0.014 Score=59.58 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=30.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~ 367 (684)
.-|.+.|+||+|||++|+.|++.+ +.+.+.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 678899999999999999999999 5567766666553
No 379
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.64 E-value=0.057 Score=59.11 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+++.|.||||||.||-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 578999999999999999998887
No 380
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.61 E-value=0.042 Score=55.85 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++|.||+|+|||++.+.++..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999633
No 381
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.60 E-value=0.032 Score=56.54 Aligned_cols=97 Identities=22% Similarity=0.284 Sum_probs=57.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
..++|.|+-|+|||+..+.|+... +.-+..... .......+ ...-++.|||++.+.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~--------~kd~~~~l----------~~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD--------DKDFLEQL----------QGKWIVELDELDGLSKK 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCccccCC--------CcHHHHHH----------HHhHheeHHHHhhcchh
Confidence 567899999999999999996652 211111111 01222222 12258999999998754
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCC
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~ 469 (684)
-++.|-.++......+ +...++...--.++.+||.|+|.
T Consensus 111 --------------~~~~lK~~iT~~~~~~------R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 111 --------------DVEALKSFITRRTDTY------RPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred --------------hHHHHHHHhcccceee------ecCCcCcceeeceeEEEEeccCC
Confidence 4566777775433322 22333433445566888888874
No 382
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.60 E-value=0.027 Score=57.28 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
..++++||||+|||++|..++... +.+.+.+++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 577899999999999999997544 5667777775
No 383
>PLN02199 shikimate kinase
Probab=95.59 E-value=0.013 Score=62.97 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=29.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
.+|+|+|.+|+|||++++.+|+.++.+|+-.|
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 78999999999999999999999999997544
No 384
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.084 Score=59.02 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=27.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
+..++|+||+|+|||+++..||..+ +.....+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3789999999999999999998766 3345555553
No 385
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.55 E-value=0.045 Score=54.36 Aligned_cols=25 Identities=48% Similarity=0.724 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+++.||+|+|||++++++...+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 7899999999999999999998773
No 386
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.0098 Score=58.95 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
.++++|.||||||++|+.|+ .++.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8887766444
No 387
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.54 E-value=0.034 Score=60.77 Aligned_cols=25 Identities=44% Similarity=0.761 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+++.||+|+|||++.+++...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999988764
No 388
>PHA01747 putative ATP-dependent protease
Probab=95.53 E-value=0.042 Score=60.38 Aligned_cols=80 Identities=19% Similarity=0.146 Sum_probs=47.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcc----cchHHhhcCCEEEEcccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS----DYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a----~~~v~~a~~gVLfIDEId 405 (684)
.-|++=.||.|||||++-+-++.... +.. +....+ +..+|..+ .+.+ ...-+|++|||.
T Consensus 190 NyNliELgPRGTGKS~~f~eis~fsp--~~i-SGG~~T------------vA~LFyN~~t~~~GLV--g~~D~VaFDEVa 252 (425)
T PHA01747 190 PVHIIELSNRGTGKTTTFVILQELFN--FRY-YTEPPT------------YANLVYDAKTNALGLV--FLSNGLIFDEIQ 252 (425)
T ss_pred CeeEEEecCCCCChhhHHHHhhhcCC--cee-eCCCCc------------hHHheEecCCCceeEE--eeccEEEEEccc
Confidence 47888889999999999988876442 222 222211 11122111 1111 112479999999
Q ss_pred ccchhhcccccCCCCchHHHHHHHHHHHhcc
Q 005663 406 KITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
.+.-+. ...+.+.|...|+..
T Consensus 253 ~i~f~~----------~kdiv~IMKdYMesG 273 (425)
T PHA01747 253 TWKDSN----------MRAINSTLSTGMENC 273 (425)
T ss_pred cccCCC----------HHHHHHHHHHHhhcc
Confidence 987542 112888899999833
No 389
>PRK01184 hypothetical protein; Provisional
Probab=95.52 E-value=0.012 Score=57.76 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=24.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
.++|+|+||+||||+|+ +++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 67899999999999998 778888776543
No 390
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.11 Score=54.31 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=55.4
Q ss_pred ceEEEEccCC-CcHHHHHHHHHHHhCC---------CEEEEecccc--ccCCccccchHHHHHHHHhcccchHHhhcCCE
Q 005663 331 SNILLMGPTG-SGKTLLAKTLARYVNV---------PFVIADATTL--TQAGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPpG-TGKT~LAkaLA~~l~~---------pfv~v~~s~l--~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
...||.|..+ ++|..++.-+++.+.. .+..+....- .....++-+ .++++..........+..-|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~Id---qIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIE---QIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHH---HHHHHHHHHhhCcccCCcEE
Confidence 6889999998 9999999998887732 2333322110 001123322 33343322211111345679
Q ss_pred EEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 399 LfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
++||++|+|... ..++||+.||
T Consensus 93 iII~~ae~mt~~--------------AANALLKtLE 114 (263)
T PRK06581 93 AIIYSAELMNLN--------------AANSCLKILE 114 (263)
T ss_pred EEEechHHhCHH--------------HHHHHHHhhc
Confidence 999999999988 9999999999
No 391
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.48 E-value=0.019 Score=63.58 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
.-++|.|+||+|||+++..+|..+ +.+.+.++..
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 677899999999999999997655 3456666553
No 392
>PLN02165 adenylate isopentenyltransferase
Probab=95.45 E-value=0.013 Score=63.87 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
..++|+||+|+|||+||..||+.++..++..|.
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 578999999999999999999999887665444
No 393
>PRK10867 signal recognition particle protein; Provisional
Probab=95.45 E-value=0.17 Score=57.32 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=28.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l----~~pfv~v~~s~l 366 (684)
|..++++|++|+|||+++-.+|..+ +.....+++..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 5788999999999999888887655 455666777544
No 394
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.42 E-value=0.015 Score=59.61 Aligned_cols=36 Identities=39% Similarity=0.561 Sum_probs=28.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
.++++||+|||||.+|-++|+..+.|.+..|.-..-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 568999999999999999999999999999976543
No 395
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.42 E-value=0.05 Score=58.56 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
-.+++.|++|||||++|+.||+.++.+.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 6789999999999999999999998874
No 396
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.41 E-value=0.043 Score=58.27 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.++++.||||+|||++.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998873
No 397
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.39 E-value=0.033 Score=59.10 Aligned_cols=77 Identities=27% Similarity=0.314 Sum_probs=41.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc--cCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT--QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~--~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdk 406 (684)
=|+|+|-||+|||++|+.|++.+ +...+.++-..+. ...|.-...++.++..+..+-... -....||++|..--
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCch
Confidence 36899999999999999998876 4566666654443 223444444566655544322111 13457999998876
Q ss_pred cch
Q 005663 407 ITK 409 (684)
Q Consensus 407 l~~ 409 (684)
+-.
T Consensus 82 iKg 84 (270)
T PF08433_consen 82 IKG 84 (270)
T ss_dssp SHH
T ss_pred HHH
Confidence 543
No 398
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.39 E-value=0.077 Score=59.56 Aligned_cols=173 Identities=18% Similarity=0.286 Sum_probs=99.4
Q ss_pred HHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEe
Q 005663 378 SILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQID 457 (684)
Q Consensus 378 ~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~Id 457 (684)
+.+..++..+.+ ++-+|+|||++.+.+- .++.+++...+.|++++++.. +| .
T Consensus 227 k~L~~~lr~aGy-----~GLlI~lDE~e~l~kl------~~~~~R~~~ye~lr~lidd~~-----~G------------~ 278 (416)
T PF10923_consen 227 KGLARFLRDAGY-----KGLLILLDELENLYKL------RNDQAREKNYEALRQLIDDID-----QG------------R 278 (416)
T ss_pred HHHHHHHHHcCC-----CceEEEEechHHHHhc------CChHHHHHHHHHHHHHHHHHh-----cC------------C
Confidence 344455555543 4568999999988654 334556778999999998311 11 2
Q ss_pred eccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEe
Q 005663 458 TKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSL 537 (684)
Q Consensus 458 tsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f 537 (684)
..++.|+++|+.. .+... +.+-.+++. |.+++..+- .-.+++.+-...+|.+
T Consensus 279 ~~gL~~~~~gTPe----f~eD~----------------rrGv~sY~A----L~~RL~~~~----~~~~~~~n~~~pvIrL 330 (416)
T PF10923_consen 279 APGLYFVFAGTPE----FFEDG----------------RRGVYSYEA----LAQRLAEEF----FADDGFDNLRAPVIRL 330 (416)
T ss_pred CCceEEEEeeCHH----HhhCc----------------cccccccHH----HHHHHhccc----cccccccCccCceecC
Confidence 4568888888842 22110 011122333 333332110 0135666666678999
Q ss_pred cccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCCh--HHHHHHHHHH--HHHHHhcCCCC
Q 005663 538 LALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA--RGLRSLLENI--LMDAMYEIPDV 613 (684)
Q Consensus 538 ~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GA--R~Lr~iIe~~--l~~al~e~~~~ 613 (684)
.+|+.+++..++.+- ..-|.. ..+....++++.+..+++..+..-+|. +.-|.+|... +++.+.+.|+.
T Consensus 331 ~~l~~eel~~l~~kl----r~i~a~---~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~Ld~~~q~p~~ 403 (416)
T PF10923_consen 331 QPLTPEELLELLEKL----RDIYAE---AYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDVLDILEQNPDF 403 (416)
T ss_pred CCCCHHHHHHHHHHH----HHHHHh---hCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999887752 222222 223457799999999998755443332 1123444433 44555555553
No 399
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.38 E-value=0.016 Score=56.56 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=31.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
+..+++.|++|+|||++++++++.++.+|+ ++.++.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~--dgDd~H 47 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFI--DGDDLH 47 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCccc--ccccCC
Confidence 468899999999999999999999999885 555554
No 400
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.37 E-value=0.04 Score=52.54 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=18.5
Q ss_pred ceEEEEccCCCcHHH-HHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTL-LAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~-LAkaLA~~l 354 (684)
.++++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 478999999999999 555555544
No 401
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.36 E-value=0.015 Score=56.93 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=23.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
+..++|.|+||+|||++|+.+++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999999998885
No 402
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.34 E-value=0.077 Score=60.23 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
..+||+||||+|||+++..++... +.+.+.++..
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 677899999999999999997655 4566666654
No 403
>PRK14529 adenylate kinase; Provisional
Probab=95.33 E-value=0.014 Score=60.26 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=27.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
+++|.||||+|||++|+.||+.++.+.+ +..++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdl 34 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAI 34 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchh
Confidence 4789999999999999999999987654 44444
No 404
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.32 E-value=0.022 Score=55.58 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~ 365 (684)
..++|.|+||+|||++|+.++..+ +..+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 678899999999999999999888 33455566543
No 405
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.32 E-value=0.036 Score=54.76 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=27.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s 364 (684)
.+|+.|+||+|||++|..++..++.+.+.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 579999999999999999999887776555543
No 406
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.30 E-value=0.017 Score=62.35 Aligned_cols=36 Identities=42% Similarity=0.589 Sum_probs=31.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..++++||+|+|||++|..||+.++.+++..|.-.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 578899999999999999999999988877776433
No 407
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.24 E-value=0.025 Score=57.18 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+++.|+||+|||++.+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 3688999999999999998774
No 408
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.21 E-value=0.032 Score=56.91 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
+.++|+||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999973
No 409
>PLN02459 probable adenylate kinase
Probab=95.21 E-value=0.02 Score=60.44 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
.+++|.||||+||+++|+.||+.++.+. +++.++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdl 63 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDL 63 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHH
Confidence 4688999999999999999999997654 455444
No 410
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.21 E-value=0.11 Score=53.59 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++|.||+|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999976
No 411
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.20 E-value=0.051 Score=53.58 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=28.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
.-++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 678899999999999999999887 334566666554
No 412
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.20 E-value=0.038 Score=61.16 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
...+++||||||||++++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 567999999999999999998877
No 413
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.19 E-value=0.016 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
.+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999988753
No 414
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.16 E-value=0.016 Score=57.64 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999997666665444
No 415
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.14 E-value=0.085 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++++||...|||++.|.++...
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 468999999999999999996544
No 416
>PRK13764 ATPase; Provisional
Probab=95.12 E-value=0.037 Score=64.77 Aligned_cols=25 Identities=36% Similarity=0.699 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.++|++||||+||||++++++..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999998884
No 417
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.11 E-value=0.088 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++|+||+|+|||++.|+|+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 467899999999999999997433
No 418
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.10 E-value=0.04 Score=52.53 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=25.2
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+.++++.+ ..+.+.||+|+|||+|+++++..+
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 33445445 566799999999999999998876
No 419
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.08 E-value=0.024 Score=54.05 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
..++|.|+.|+|||+++|.+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 578899999999999999999999753
No 420
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.42 Score=55.36 Aligned_cols=25 Identities=44% Similarity=0.597 Sum_probs=21.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
...+.|+||+|+|||+++..|+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4788899999999999999997654
No 421
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.08 E-value=0.037 Score=57.89 Aligned_cols=68 Identities=29% Similarity=0.407 Sum_probs=40.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEe-ccccccC--C---c----cccchHHHHHHHHhcccchHHhhcCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIAD-ATTLTQA--G---Y----VGEDVESILYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~---pfv~v~-~s~l~~s--g---y----vG~~~~~~l~~l~~~a~~~v~~a~~g 397 (684)
.++++.||+|+|||++++++...+.. .++.+. ..++.-. . + -+.+....+...++. .+-
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~--------~pD 199 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQ--------DPD 199 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS----------S
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcC--------CCC
Confidence 79999999999999999999888833 333333 2233110 0 0 112223444444333 457
Q ss_pred EEEEccccc
Q 005663 398 IVYIDEVDK 406 (684)
Q Consensus 398 VLfIDEIdk 406 (684)
+|+++||-.
T Consensus 200 ~iiigEiR~ 208 (270)
T PF00437_consen 200 VIIIGEIRD 208 (270)
T ss_dssp EEEESCE-S
T ss_pred cccccccCC
Confidence 999999976
No 422
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.07 E-value=0.047 Score=58.82 Aligned_cols=24 Identities=46% Similarity=0.682 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.++++.||+|+|||++++++...+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC
Confidence 799999999999999999998777
No 423
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.07 E-value=0.026 Score=57.11 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=25.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
..+++.|+||+|||++|+.+|+.++.++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 6789999999999999999999987654
No 424
>PF13479 AAA_24: AAA domain
Probab=95.03 E-value=0.025 Score=57.55 Aligned_cols=20 Identities=60% Similarity=0.919 Sum_probs=18.6
Q ss_pred ceEEEEccCCCcHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaL 350 (684)
..+||+|+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 68899999999999999888
No 425
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.1 Score=61.61 Aligned_cols=39 Identities=31% Similarity=0.353 Sum_probs=33.1
Q ss_pred cccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 386 VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 386 ~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
..++.+++|++|||||||+..|... .|+.+|+.|..+..
T Consensus 216 i~pGaVHkAngGVLiIdei~lL~~~--------------~~w~~LKa~~~k~~ 254 (647)
T COG1067 216 VKPGAVHKANGGVLIIDEIGLLAQP--------------LQWKLLKALLDKEQ 254 (647)
T ss_pred ccCcccccccCcEEEEEhhhhhCcH--------------HHHHHHHHHHhccc
Confidence 4567888999999999999999987 89999999975433
No 426
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.01 E-value=0.079 Score=54.11 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=18.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.+.||.|||||+||-+.|-.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 577899999999999998887544
No 427
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.98 E-value=0.027 Score=55.84 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=24.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
..+.+.|++|+|||+++++++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 578899999999999999999998764
No 428
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.94 E-value=0.064 Score=53.85 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++|+||.|+|||++.++++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4789999999999999999983
No 429
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.93 E-value=0.16 Score=60.77 Aligned_cols=49 Identities=24% Similarity=0.387 Sum_probs=35.1
Q ss_pred CCCCCCccccccc-ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccc
Q 005663 318 TDGVDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (684)
Q Consensus 318 ~~~~~~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l~~--pfv~v~~s~l 366 (684)
+...++..+++++ ..+.++|++|||||||+|.+...+.. --+.+|.-++
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl 537 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeH
Confidence 3455667777777 45779999999999999999877732 1344554444
No 430
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.90 E-value=0.048 Score=65.67 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=49.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc------CCccccchHHHHHHHHhcccchHHhhcCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYI 401 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfI 401 (684)
..++|.|+||||||++++++...+ +..++-+-.+.... .+.-.......+... .. .........+|+|
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~-~~--~~~~~~~~~llIv 445 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAW-AN--GRDLLSDKDVLVI 445 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhh-cc--CcccCCCCcEEEE
Confidence 467899999999999999997655 44444443332210 122112222211111 11 1001135579999
Q ss_pred ccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 402 DEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
||+..+... ....|+....
T Consensus 446 DEasMv~~~--------------~~~~Ll~~~~ 464 (744)
T TIGR02768 446 DEAGMVGSR--------------QMARVLKEAE 464 (744)
T ss_pred ECcccCCHH--------------HHHHHHHHHH
Confidence 999998766 5666776543
No 431
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.89 E-value=0.36 Score=52.98 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.2
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++.++.|+|+-|+|||.|.-.+-..+
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~l 89 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESL 89 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhC
Confidence 45899999999999999998887766
No 432
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.88 E-value=0.094 Score=51.81 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=25.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
+|++|++|+|||++|..++...+.+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 5899999999999999998876666655543
No 433
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.85 E-value=0.078 Score=55.99 Aligned_cols=68 Identities=25% Similarity=0.366 Sum_probs=41.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEe-ccccccCC--------ccccchHHHHHHHHhcccchHHhhcCCE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIAD-ATTLTQAG--------YVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~---pfv~v~-~s~l~~sg--------yvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
..+++.||+|+|||++++++...+.. .++.+. ..++.-.+ ..|.+....+...+. ..+-+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR--------~~PD~ 152 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILR--------QDPDI 152 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhc--------cCCCE
Confidence 67899999999999999999766632 234432 22221111 112233344444443 35679
Q ss_pred EEEccccc
Q 005663 399 VYIDEVDK 406 (684)
Q Consensus 399 LfIDEIdk 406 (684)
|+++||..
T Consensus 153 i~vgEiR~ 160 (264)
T cd01129 153 IMVGEIRD 160 (264)
T ss_pred EEeccCCC
Confidence 99999866
No 434
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.82 E-value=0.026 Score=53.52 Aligned_cols=26 Identities=42% Similarity=0.675 Sum_probs=22.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++|+||+|+|||++++.|++.+...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 57899999999999999999875443
No 435
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.80 E-value=0.026 Score=56.52 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=25.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s 364 (684)
+.-++|.||||+|||+|++.|.+....-+..+.++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~T 38 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCT 38 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCcc
Confidence 36789999999999999999987653223334443
No 436
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.80 E-value=0.066 Score=58.25 Aligned_cols=76 Identities=25% Similarity=0.218 Sum_probs=44.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCC---cccc-----------chHHHHHHHHhcccchHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGE-----------DVESILYKLLTVSDYNVAA 393 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sg---yvG~-----------~~~~~l~~l~~~a~~~v~~ 393 (684)
..++++||||||||+||..++... +.+.+.+|+..-..+. ..|. ..+..+..+ ...+..
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~----~~li~~ 131 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIA----ETLVRS 131 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHH----HHHhhc
Confidence 577899999999999988764433 5666777664321100 0011 111111111 112233
Q ss_pred hcCCEEEEccccccchh
Q 005663 394 AQQGIVYIDEVDKITKK 410 (684)
Q Consensus 394 a~~gVLfIDEIdkl~~~ 410 (684)
....+|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPK 148 (321)
T ss_pred cCCcEEEEcchhhhccc
Confidence 45679999999998764
No 437
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.78 E-value=0.019 Score=63.10 Aligned_cols=46 Identities=30% Similarity=0.621 Sum_probs=31.7
Q ss_pred CCCcccccccceEE-EEccCCCcHHHHHHHHHHHhC--CCEEEEecccc
Q 005663 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN--VPFVIADATTL 366 (684)
Q Consensus 321 ~~~~~~~~~~~~vL-L~GPpGTGKT~LAkaLA~~l~--~pfv~v~~s~l 366 (684)
.++.++.+.+.-++ |.||+||||||+.|+||..-. .--+.++..++
T Consensus 21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i 69 (352)
T COG3842 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI 69 (352)
T ss_pred EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 45556666666555 999999999999999997662 12344444444
No 438
>PLN02796 D-glycerate 3-kinase
Probab=94.75 E-value=1 Score=49.62 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.-+-+.|++|+|||+++++|...+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5567999999999999999998884
No 439
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.12 Score=49.45 Aligned_cols=34 Identities=32% Similarity=0.621 Sum_probs=26.7
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.+.++.+++ ..+.|.||+|+|||+++++|+..+.
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344555555 5677999999999999999998763
No 440
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.74 E-value=0.067 Score=62.48 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=29.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC----CEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~----pfv~v~~s~l 366 (684)
..++|+|+||+|||++|++|++.++. ++..+|...+
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 68899999999999999999999864 3455565544
No 441
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.71 E-value=0.04 Score=54.87 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=24.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC-CCEEEEeccc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVN-VPFVIADATT 365 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~-~pfv~v~~s~ 365 (684)
+.|.||+|+|||+++++|+..+. .....+.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 57899999999999999999873 2333444433
No 442
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.69 E-value=0.027 Score=56.20 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..++|+||+|+|||+|++.|++.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6789999999999999999999875
No 443
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.67 E-value=0.15 Score=55.79 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.++|+.|++|+|||++++++...+.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 7999999999999999999988774
No 444
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.67 E-value=0.022 Score=55.52 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
.-++|+||+|+|||++++.|++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46789999999999999999987644
No 445
>PRK13975 thymidylate kinase; Provisional
Probab=94.66 E-value=0.049 Score=53.87 Aligned_cols=27 Identities=44% Similarity=0.444 Sum_probs=24.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.-+.|.|++|+|||++|+.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 467899999999999999999999754
No 446
>PRK13808 adenylate kinase; Provisional
Probab=94.63 E-value=0.031 Score=60.96 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=27.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
.|+|+||||+|||++++.|++.++.+.+ +..++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdl 34 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDM 34 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHH
Confidence 4799999999999999999999977554 44443
No 447
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.63 E-value=0.086 Score=65.04 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=49.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---CCccccchHHHHHHHHhcc-cchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVS-DYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~---sgyvG~~~~~~l~~l~~~a-~~~v~~a~~gVLfIDE 403 (684)
..+++.|++|||||++.+++.+.+ +..++-+-.+.... .+-.|.. ...+..++... .+........||+|||
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~-a~TI~sll~~~~~~~~~l~~~~vlIVDE 441 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIA-SRTIASLEHGWGQGRDLLTSRDVLVIDE 441 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcc-hhhHHHHHhhhcccccccccCcEEEEEC
Confidence 356799999999999998886655 44444443332211 0111211 12222222110 0000112456999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+..+... ....||+..+
T Consensus 442 ASMv~~~--------------~m~~LL~~a~ 458 (988)
T PRK13889 442 AGMVGTR--------------QLERVLSHAA 458 (988)
T ss_pred cccCCHH--------------HHHHHHHhhh
Confidence 9998766 6677777664
No 448
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.63 E-value=0.21 Score=55.67 Aligned_cols=39 Identities=44% Similarity=0.646 Sum_probs=26.2
Q ss_pred cccceEEEEccCCCcHHHHHHHH-HHHh------CCCEEEEecccc
Q 005663 328 LEKSNILLMGPTGSGKTLLAKTL-ARYV------NVPFVIADATTL 366 (684)
Q Consensus 328 ~~~~~vLL~GPpGTGKT~LAkaL-A~~l------~~pfv~v~~s~l 366 (684)
.+++.+.|+||+|+||||..-.| |+.. .+.+++.|.--+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 34688999999999999755444 4444 234666665443
No 449
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.63 E-value=0.028 Score=56.06 Aligned_cols=23 Identities=61% Similarity=0.860 Sum_probs=21.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
|-+.||||+|||++|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999996
No 450
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.58 E-value=0.1 Score=51.88 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|.||+|+|||+|.+.|+..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 566799999999999999999876
No 451
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.56 E-value=0.024 Score=55.29 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=21.7
Q ss_pred EccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 336 MGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 336 ~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
+|+||+|||+++++++..++..++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~ 25 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLD 25 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEe
Confidence 4999999999999999999865543
No 452
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.56 E-value=0.043 Score=54.44 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=26.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~l 366 (684)
+.+.|+||+|||++|+.|++.+. .+...++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 57899999999999999999873 45555555444
No 453
>PRK12338 hypothetical protein; Provisional
Probab=94.56 E-value=0.036 Score=60.13 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=26.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|..+++.|+||+|||++|+++|+.++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 36889999999999999999999998754
No 454
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.51 E-value=0.038 Score=59.15 Aligned_cols=34 Identities=38% Similarity=0.646 Sum_probs=29.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
++++||||+|||++|..||+.++..++.+|.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999988877776544
No 455
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.50 E-value=1.5 Score=49.55 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHH--HHHHHHhCCCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLA--KTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LA--kaLA~~l~~pfv~v~~s~l~ 367 (684)
.-|++.||.|+||+.|+ ++|...- ..+.+||..+.
T Consensus 18 TFIvV~GPrGSGK~elV~d~~L~~r~--~vL~IDC~~i~ 54 (431)
T PF10443_consen 18 TFIVVQGPRGSGKRELVMDHVLKDRK--NVLVIDCDQIV 54 (431)
T ss_pred eEEEEECCCCCCccHHHHHHHHhCCC--CEEEEEChHhh
Confidence 56788999999999999 6666543 37888998874
No 456
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.50 E-value=0.034 Score=55.92 Aligned_cols=23 Identities=48% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
|.+.|+||+|||++|+.|++.+.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56889999999999999999983
No 457
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.50 E-value=0.42 Score=54.10 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=29.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l----~~pfv~v~~s~l 366 (684)
|..++++|++|+|||++|..+|..+ +.+...++|..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 5788999999999999998887764 455666777644
No 458
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.49 E-value=0.04 Score=55.22 Aligned_cols=38 Identities=32% Similarity=0.464 Sum_probs=30.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEeccccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV-NVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l-~~pfv~v~~s~l~ 367 (684)
|.-+++.|+||+|||+++..+...+ ...++.+|..++.
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 4778899999999999999998887 7778889988775
No 459
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.49 E-value=0.11 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++|+||+|.|||++.+.++-.
T Consensus 31 ~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 31 RILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred cEEEEECCCCCchHHHHHHHHHH
Confidence 57789999999999999999644
No 460
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.47 E-value=0.15 Score=58.21 Aligned_cols=85 Identities=25% Similarity=0.346 Sum_probs=54.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE-EEec---cccccC--------CccccchHHHHHHHHhcccchHHhhcCCE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV-IADA---TTLTQA--------GYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv-~v~~---s~l~~s--------gyvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
+-+|+.||+|+|||++..++.+.++.+.. .+.. -++.-+ .-+|-+....++.+++. .|-|
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRq--------DPDv 330 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQ--------DPDV 330 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhcc--------CCCe
Confidence 67789999999999999999888866533 1121 122111 13444555666666554 4579
Q ss_pred EEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 399 LfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
|.+.||-..-. ++-++-..+.|+.|
T Consensus 331 ImVGEIRD~ET---------------AeiavqAalTGHLV 355 (500)
T COG2804 331 IMVGEIRDLET---------------AEIAVQAALTGHLV 355 (500)
T ss_pred EEEeccCCHHH---------------HHHHHHHHhcCCeE
Confidence 99999976321 44555555566655
No 461
>PLN02840 tRNA dimethylallyltransferase
Probab=94.44 E-value=0.043 Score=61.60 Aligned_cols=36 Identities=39% Similarity=0.595 Sum_probs=31.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..+++.||+|+|||++|..||+.++.+++.+|.-.+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 468899999999999999999999988877776433
No 462
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.42 E-value=0.23 Score=52.98 Aligned_cols=104 Identities=22% Similarity=0.188 Sum_probs=66.6
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005663 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~ 345 (684)
-+.++.++.+.+.+.|.....-.+..++..+..++. ..+...+-|+|.+++|||+
T Consensus 154 Gtle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l-------------------------~~~~~~~hl~G~Ss~GKTt 208 (286)
T PF06048_consen 154 GTLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLL-------------------------GVEGFGFHLYGQSSSGKTT 208 (286)
T ss_pred cCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh-------------------------CCCceEEEEEeCCCCCHHH
Confidence 456677777777778888777777666654444321 1123677799999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 346 LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
++++.+...+.|- .+. ..|-+.. .-+.... .......|+|||+....+.
T Consensus 209 ~~~~a~Sv~G~p~------~l~-~sw~~T~--n~le~~a-------~~~nd~~l~lDE~~~~~~~ 257 (286)
T PF06048_consen 209 ALQLAASVWGNPD------GLI-RSWNSTD--NGLERTA-------AAHNDLPLVLDELSQADPK 257 (286)
T ss_pred HHHHhhhhCcCch------hhh-hcchhhH--HHHHHHH-------HHcCCcceEehhccccchh
Confidence 9999999888876 222 1232222 1122211 1234578999999876554
No 463
>PRK08356 hypothetical protein; Provisional
Probab=94.35 E-value=0.051 Score=54.31 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=25.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..++|+||||+|||++|+.|++ .+.+ .+++++.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~--~is~~~~ 38 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFC--RVSCSDP 38 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCc--EEeCCCc
Confidence 5688999999999999999964 5554 5566553
No 464
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.35 E-value=0.081 Score=58.11 Aligned_cols=25 Identities=52% Similarity=0.761 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.++|+.||+|+|||++++++...+.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccC
Confidence 7999999999999999999998773
No 465
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.35 E-value=0.043 Score=54.13 Aligned_cols=32 Identities=41% Similarity=0.616 Sum_probs=25.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
+.|+|++|+|||++++.+++ ++.+. +++..+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~--i~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV--IDADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE--EecCHHH
Confidence 67999999999999999999 67655 5555554
No 466
>PLN02348 phosphoribulokinase
Probab=94.33 E-value=0.15 Score=56.89 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
.-|-+.|++|+|||++|+.|++.++.
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46669999999999999999999864
No 467
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.31 E-value=0.14 Score=52.55 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++|.||.|+|||++.+.++..
T Consensus 31 ~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 31 RFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 56789999999999999998644
No 468
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.30 E-value=0.058 Score=52.49 Aligned_cols=35 Identities=40% Similarity=0.519 Sum_probs=27.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
.+++.||||+|||+++..++..+ +.....+++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 46899999999999999998776 556777777543
No 469
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.27 E-value=0.039 Score=64.02 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=30.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
..++|+|.+|+|||++++.+|+.++.+|+-.|.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 688999999999999999999999999987764
No 470
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.27 E-value=0.041 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.+.||+|+||||++++|+..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5667999999999999999998875
No 471
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.25 E-value=0.13 Score=58.44 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=28.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCC-EEEEec
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVP-FVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~p-fv~v~~ 363 (684)
|..+++.|+||+|||++|..+|..++.. ++..|.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 4788999999999999999999999876 444443
No 472
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.23 E-value=0.091 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.-+.|.||+|+|||+|++.|+..+.
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6778999999999999999998884
No 473
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.23 E-value=0.12 Score=54.93 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=28.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~ 365 (684)
+..++|+||+|+|||+++..+|..+ +.....+++..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4678899999999999999998776 44555566543
No 474
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.033 Score=56.84 Aligned_cols=24 Identities=50% Similarity=0.647 Sum_probs=21.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
-++|.|+||+|||++|+-||+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 468999999999999999999993
No 475
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.15 E-value=0.044 Score=62.85 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=28.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
++.|+|++|+|||++++.+|+.++.+|+..|.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 58999999999999999999999999986553
No 476
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.14 E-value=0.052 Score=55.67 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..+.+.||+|+|||++|+.||+.++.+++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46789999999999999999999987765
No 477
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.13 E-value=0.096 Score=50.15 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=24.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
.++||.+|+|+|||.++-.++..+..+++.+-
T Consensus 26 ~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~ 57 (184)
T PF04851_consen 26 RRVLLNAPTGSGKTIIALALILELARKVLIVA 57 (184)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCEEEEECCCCCcChhhhhhhhccccceeEec
Confidence 78999999999999999876555544555443
No 478
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.12 E-value=0.23 Score=58.57 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=19.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.-.++.|+||||||++++.+...+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 567899999999999988775444
No 479
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.10 E-value=0.29 Score=49.53 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+++++++|.|||++|-.+|-..
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHH
Confidence 789999999999999998886444
No 480
>PRK06761 hypothetical protein; Provisional
Probab=94.08 E-value=0.052 Score=58.01 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
.-+++.||||+||||+++.+++.+....+.++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 468899999999999999999999765444443
No 481
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.07 E-value=0.3 Score=60.91 Aligned_cols=45 Identities=24% Similarity=0.473 Sum_probs=33.1
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEeccccc
Q 005663 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLT 367 (684)
Q Consensus 323 ~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l~~--pfv~v~~s~l~ 367 (684)
+-.+..++ ..+-|+||+||||+|+...|=+.++. --+.+|..++.
T Consensus 1008 ~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik 1055 (1228)
T KOG0055|consen 1008 NLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIK 1055 (1228)
T ss_pred CCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccc
Confidence 33344444 67789999999999999999888843 35777776663
No 482
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.06 E-value=0.21 Score=50.77 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
..+++.|+||+|||++|..++... +.+.+.++..
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 678899999999999998886432 5565555554
No 483
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.01 E-value=0.058 Score=58.22 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=32.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
.-++++||++||||-+|-.||+.++.+.+.+|.-.+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 578999999999999999999999999998887655
No 484
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.99 E-value=0.9 Score=54.78 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=21.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+..++|+||+|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3678999999999999999998655
No 485
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.94 E-value=0.04 Score=57.41 Aligned_cols=45 Identities=31% Similarity=0.556 Sum_probs=30.5
Q ss_pred CCcccccccceEE-EEccCCCcHHHHHHHHHHHhCCC--EEEEecccc
Q 005663 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTL 366 (684)
Q Consensus 322 ~~~~~~~~~~~vL-L~GPpGTGKT~LAkaLA~~l~~p--fv~v~~s~l 366 (684)
++..+++.++-+| |+||+|||||||+++++...... -+.++...+
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~ 71 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL 71 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence 4445556665555 99999999999999999766322 244444433
No 486
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.92 E-value=0.082 Score=52.19 Aligned_cols=28 Identities=46% Similarity=0.701 Sum_probs=25.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
+.++|+||+|+|||+|++.|.+.....|
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 6889999999999999999998886555
No 487
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.91 E-value=0.056 Score=54.42 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=28.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
.+.++|++|+|||++|+.+++.++.+++ |+..+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~ 36 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYA 36 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHH
Confidence 5789999999999999999998887765 555553
No 488
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.88 E-value=0.069 Score=52.19 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l 354 (684)
|.|.|++|+|||++++.|++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998
No 489
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.85 E-value=0.074 Score=44.22 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=20.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh
Q 005663 332 NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+|+||+|+|||++..|+.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997666
No 490
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.82 E-value=0.17 Score=56.13 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+|+.||+|+|||++++++.+.+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998877
No 491
>PRK07667 uridine kinase; Provisional
Probab=93.77 E-value=0.086 Score=52.75 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~l 366 (684)
.-|.+.|+||+|||++|+.|++.++ .+...++..++
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 5677999999999999999998874 35555555443
No 492
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.71 E-value=0.069 Score=59.77 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..|+|+|++|||||+|+++||+.++.+.+
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 78999999999999999999999887754
No 493
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.69 E-value=0.066 Score=56.48 Aligned_cols=45 Identities=31% Similarity=0.441 Sum_probs=32.6
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEeccccc
Q 005663 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLT 367 (684)
Q Consensus 323 ~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l~~--pfv~v~~s~l~ 367 (684)
+..+.+++ ..+.+.||.|||||||.|++++.+.. --+.++..++.
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 44455555 45569999999999999999998842 34666665553
No 494
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.68 E-value=0.046 Score=50.27 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=21.3
Q ss_pred ccccc-ceEEEEccCCCcHHHHHHHHH
Q 005663 326 VELEK-SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 326 ~~~~~-~~vLL~GPpGTGKT~LAkaLA 351 (684)
+.+.+ ..++|.||+|+|||+|++++.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 33434 678899999999999999986
No 495
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.66 E-value=0.063 Score=55.30 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..+.+.||+|+|||++|+.||+.++.+++
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~ 33 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYL 33 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 57889999999999999999999988775
No 496
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=93.66 E-value=0.063 Score=61.86 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=28.1
Q ss_pred ccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 325 ~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
.+..++..+.+.||+|||||++|+.||+.++..+
T Consensus 279 ~~~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~ 312 (512)
T PRK13477 279 FLMKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLY 312 (512)
T ss_pred EeccCCcEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 3445567788999999999999999999997543
No 497
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.65 E-value=0.079 Score=59.47 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.++|+.||||.|||++|+++|+.+
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHH
Confidence 689999999999999999999998
No 498
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.65 E-value=0.12 Score=51.74 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=31.5
Q ss_pred EEEEccCCCcHHHHHHHH-H-HHh--CCCEEEEeccccccC---CccccchH---------------HHHHHHHhcccch
Q 005663 333 ILLMGPTGSGKTLLAKTL-A-RYV--NVPFVIADATTLTQA---GYVGEDVE---------------SILYKLLTVSDYN 390 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaL-A-~~l--~~pfv~v~~s~l~~s---gyvG~~~~---------------~~l~~l~~~a~~~ 390 (684)
.+++|.||+|||+.|-.. . ..+ +.+++. |...+... .+.+.... .......
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWR------ 75 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHT------
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhc------
Confidence 589999999999987444 3 222 555444 55433311 11111110 1111111
Q ss_pred HHhhcCCEEEEccccccchhhc
Q 005663 391 VAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 391 v~~a~~gVLfIDEIdkl~~~r~ 412 (684)
....+++|+|||++...+.+.
T Consensus 76 -~~~~~~liviDEa~~~~~~r~ 96 (193)
T PF05707_consen 76 -KLPKGSLIVIDEAQNFFPSRS 96 (193)
T ss_dssp -TSGTT-EEEETTGGGTSB---
T ss_pred -ccCCCcEEEEECChhhcCCCc
Confidence 012578999999999988744
No 499
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.64 E-value=0.045 Score=59.81 Aligned_cols=33 Identities=30% Similarity=0.635 Sum_probs=25.5
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++.++++..+ -+.|.||+||||||+.+.||...
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444555553 56799999999999999999766
No 500
>PRK09354 recA recombinase A; Provisional
Probab=93.62 E-value=0.34 Score=53.33 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=43.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH---hCCCEEEEeccccccCCc---cccchHHH-------HHHHHhcccchHHhhcCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTLTQAGY---VGEDVESI-------LYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~---l~~pfv~v~~s~l~~sgy---vG~~~~~~-------l~~l~~~a~~~v~~a~~g 397 (684)
..++++||||||||+||-.++.. .+...+.+|...-....| .|.+.... ..+.+......+......
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 56779999999999999877433 366677777654211000 01110000 000111111123334567
Q ss_pred EEEEccccccch
Q 005663 398 IVYIDEVDKITK 409 (684)
Q Consensus 398 VLfIDEIdkl~~ 409 (684)
+|+||=+..+.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
Done!