Query 005663
Match_columns 684
No_of_seqs 420 out of 3531
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 03:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 6.6E-43 2.3E-47 375.1 22.7 344 264-634 2-346 (363)
2 1um8_A ATP-dependent CLP prote 100.0 9.6E-38 3.3E-42 336.2 29.0 349 263-634 7-362 (376)
3 1g41_A Heat shock protein HSLU 100.0 1.7E-36 5.7E-41 335.0 25.7 301 265-652 3-443 (444)
4 1ofh_A ATP-dependent HSL prote 100.0 3.5E-27 1.2E-31 244.0 23.6 287 265-633 3-295 (310)
5 1r6b_X CLPA protein; AAA+, N-t 99.9 6.7E-27 2.3E-31 273.6 24.4 273 255-610 432-719 (758)
6 4fcw_A Chaperone protein CLPB; 99.9 6.9E-26 2.4E-30 235.4 22.8 260 269-610 9-282 (311)
7 3pxi_A Negative regulator of g 99.9 3.1E-26 1.1E-30 268.3 22.3 258 255-611 465-729 (758)
8 1qvr_A CLPB protein; coiled co 99.9 9.4E-26 3.2E-30 267.8 20.4 275 254-610 531-823 (854)
9 4b4t_J 26S protease regulatory 99.9 5.5E-23 1.9E-27 224.3 20.4 221 278-609 149-372 (405)
10 4b4t_I 26S protease regulatory 99.9 1.3E-22 4.5E-27 222.4 18.1 219 278-609 183-406 (437)
11 4b4t_M 26S protease regulatory 99.9 2.1E-22 7E-27 222.2 17.2 222 278-609 182-405 (434)
12 4b4t_L 26S protease subunit RP 99.9 1.1E-21 3.9E-26 216.4 21.7 221 279-609 183-405 (437)
13 4b4t_K 26S protease regulatory 99.9 8.3E-22 2.8E-26 217.1 19.5 221 278-609 173-397 (428)
14 4b4t_H 26S protease regulatory 99.9 1.2E-21 4.2E-26 216.5 20.3 222 278-609 210-433 (467)
15 3syl_A Protein CBBX; photosynt 99.9 2.9E-21 1E-25 200.6 19.8 236 266-611 20-267 (309)
16 3m6a_A ATP-dependent protease 99.9 1.8E-21 6.3E-26 220.4 17.2 244 266-612 70-321 (543)
17 1ojl_A Transcriptional regulat 99.9 8.6E-22 2.9E-26 207.5 12.2 272 277-671 2-284 (304)
18 1xwi_A SKD1 protein; VPS4B, AA 99.8 8.2E-20 2.8E-24 193.7 21.3 222 278-611 13-235 (322)
19 2bjv_A PSP operon transcriptio 99.8 3.9E-20 1.3E-24 189.0 17.6 221 279-606 8-240 (265)
20 3eie_A Vacuolar protein sortin 99.8 6E-20 2.1E-24 194.0 18.3 220 279-610 20-239 (322)
21 2qp9_X Vacuolar protein sortin 99.8 1.7E-19 5.9E-24 193.7 17.9 221 278-610 52-272 (355)
22 3dzd_A Transcriptional regulat 99.8 5.6E-20 1.9E-24 198.8 11.5 198 331-605 153-360 (368)
23 1ny5_A Transcriptional regulat 99.8 1.9E-19 6.6E-24 195.7 13.8 199 331-605 161-369 (387)
24 3cf2_A TER ATPase, transitiona 99.8 3.1E-20 1.1E-24 218.0 7.7 223 279-611 479-703 (806)
25 3cf0_A Transitional endoplasmi 99.8 4.8E-19 1.6E-23 185.6 15.7 222 279-610 17-240 (301)
26 2zan_A Vacuolar protein sortin 99.8 8.4E-19 2.9E-23 193.9 17.1 221 278-610 135-356 (444)
27 3pfi_A Holliday junction ATP-d 99.8 6.6E-18 2.2E-22 178.0 23.0 205 279-607 31-235 (338)
28 3vfd_A Spastin; ATPase, microt 99.8 2.2E-18 7.6E-23 186.6 19.4 223 278-611 116-338 (389)
29 3d8b_A Fidgetin-like protein 1 99.8 2.9E-18 1E-22 184.0 19.9 223 278-611 85-307 (357)
30 3b9p_A CG5977-PA, isoform A; A 99.8 3.1E-18 1.1E-22 177.3 19.1 223 279-611 23-245 (297)
31 3cf2_A TER ATPase, transitiona 99.8 8.7E-19 3E-23 205.8 14.6 219 278-609 205-425 (806)
32 1lv7_A FTSH; alpha/beta domain 99.8 3.3E-17 1.1E-21 166.5 20.8 219 279-609 14-235 (257)
33 2ce7_A Cell division protein F 99.8 2.1E-17 7E-22 184.5 20.0 218 279-608 18-238 (476)
34 2qz4_A Paraplegin; AAA+, SPG7, 99.7 4.6E-17 1.6E-21 164.5 19.8 220 278-607 7-230 (262)
35 3h4m_A Proteasome-activating n 99.7 1.7E-17 5.7E-22 170.6 16.8 221 279-609 19-241 (285)
36 1g8p_A Magnesium-chelatase 38 99.7 1E-16 3.5E-21 168.7 19.4 204 331-608 46-304 (350)
37 1hqc_A RUVB; extended AAA-ATPa 99.7 3.7E-16 1.3E-20 163.0 22.2 203 279-604 14-216 (324)
38 3hu3_A Transitional endoplasmi 99.7 6.6E-17 2.3E-21 181.1 15.8 220 278-612 205-428 (489)
39 3uk6_A RUVB-like 2; hexameric 99.7 1.4E-16 4.9E-21 169.2 17.3 257 279-670 46-358 (368)
40 2dhr_A FTSH; AAA+ protein, hex 99.7 3.4E-16 1.2E-20 175.6 20.7 218 278-607 32-252 (499)
41 3t15_A Ribulose bisphosphate c 99.7 4.2E-17 1.4E-21 170.6 11.3 159 330-551 36-196 (293)
42 3pvs_A Replication-associated 99.7 1.7E-16 5.7E-21 175.9 16.5 191 279-605 28-221 (447)
43 1d2n_A N-ethylmaleimide-sensit 99.7 2E-16 6.7E-21 162.4 11.2 176 330-603 64-246 (272)
44 3u61_B DNA polymerase accessor 99.7 1.9E-15 6.6E-20 158.4 17.9 191 279-603 28-220 (324)
45 2r44_A Uncharacterized protein 99.6 7.6E-16 2.6E-20 162.2 14.2 230 269-608 19-279 (331)
46 2x8a_A Nuclear valosin-contain 99.6 2.2E-15 7.6E-20 156.4 17.1 224 279-611 12-238 (274)
47 3f9v_A Minichromosome maintena 99.6 8.5E-17 2.9E-21 184.2 5.5 258 269-608 287-569 (595)
48 2chg_A Replication factor C sm 99.6 1.3E-14 4.4E-19 140.4 18.3 187 278-604 18-209 (226)
49 3n70_A Transport activator; si 99.6 1.1E-15 3.7E-20 143.2 9.6 97 278-434 2-101 (145)
50 1ixz_A ATP-dependent metallopr 99.6 1.4E-14 4.8E-19 146.9 18.5 219 279-609 18-239 (254)
51 1iy2_A ATP-dependent metallopr 99.6 1.2E-14 4E-19 150.0 17.8 219 278-608 41-262 (278)
52 2c9o_A RUVB-like 1; hexameric 99.6 1.6E-14 5.5E-19 159.9 19.3 104 277-411 37-142 (456)
53 2r62_A Cell division protease 99.6 3.1E-17 1E-21 167.3 -2.6 216 279-606 13-233 (268)
54 1ypw_A Transitional endoplasmi 99.6 3.7E-17 1.3E-21 193.2 -6.3 224 278-612 478-704 (806)
55 1l8q_A Chromosomal replication 99.6 1.5E-14 5.3E-19 151.9 14.3 172 331-605 38-214 (324)
56 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 8.8E-14 3E-18 156.2 20.9 229 269-609 14-269 (500)
57 1njg_A DNA polymerase III subu 99.6 1.6E-13 5.6E-18 133.8 19.2 185 278-603 24-232 (250)
58 1iqp_A RFCS; clamp loader, ext 99.5 4.1E-14 1.4E-18 146.8 15.2 186 278-603 26-216 (327)
59 3co5_A Putative two-component 99.5 2.3E-15 7.8E-20 140.8 3.4 96 278-434 5-100 (143)
60 2chq_A Replication factor C sm 99.5 2.8E-14 9.7E-19 147.5 11.1 186 279-604 19-209 (319)
61 3k1j_A LON protease, ATP-depen 99.5 9.7E-14 3.3E-18 159.0 16.2 146 388-606 194-355 (604)
62 1sxj_D Activator 1 41 kDa subu 99.5 4.4E-14 1.5E-18 148.6 11.4 190 278-605 38-241 (353)
63 1jr3_A DNA polymerase III subu 99.5 5.2E-13 1.8E-17 141.4 18.4 185 279-604 18-226 (373)
64 2qby_B CDC6 homolog 3, cell di 99.5 5.1E-13 1.8E-17 142.0 18.0 204 277-606 20-252 (384)
65 1in4_A RUVB, holliday junction 99.5 2.7E-12 9.2E-17 136.3 23.1 204 279-607 27-231 (334)
66 1sxj_B Activator 1 37 kDa subu 99.5 2.9E-13 9.8E-18 140.1 15.0 186 279-604 23-214 (323)
67 2v1u_A Cell division control p 99.5 2.3E-13 7.8E-18 143.9 14.1 213 277-607 19-257 (387)
68 3bos_A Putative DNA replicatio 99.5 5.4E-13 1.9E-17 131.6 15.5 169 331-608 53-226 (242)
69 2z4s_A Chromosomal replication 99.5 3.5E-13 1.2E-17 148.8 15.2 174 331-607 131-314 (440)
70 3te6_A Regulatory protein SIR3 99.5 4.6E-13 1.6E-17 142.3 15.1 222 278-609 21-289 (318)
71 1fnn_A CDC6P, cell division co 99.5 1.7E-12 5.8E-17 137.8 19.5 211 278-608 18-256 (389)
72 1sxj_A Activator 1 95 kDa subu 99.5 2.6E-12 8.8E-17 144.4 21.8 210 279-604 41-257 (516)
73 1jbk_A CLPB protein; beta barr 99.4 3.2E-13 1.1E-17 127.6 9.3 116 277-434 22-148 (195)
74 1ypw_A Transitional endoplasmi 99.4 7.6E-13 2.6E-17 156.4 13.9 218 278-608 205-424 (806)
75 1sxj_E Activator 1 40 kDa subu 99.4 2.2E-12 7.5E-17 136.2 15.9 65 523-604 177-242 (354)
76 1sxj_C Activator 1 40 kDa subu 99.4 1.7E-12 5.8E-17 137.5 14.0 183 279-602 27-215 (340)
77 3pxg_A Negative regulator of g 99.4 2.5E-12 8.4E-17 143.1 13.9 169 279-584 182-360 (468)
78 1qvr_A CLPB protein; coiled co 99.4 5.9E-12 2E-16 149.6 17.4 187 278-585 171-368 (854)
79 3f8t_A Predicted ATPase involv 99.4 4.8E-12 1.6E-16 140.3 14.5 238 269-607 206-464 (506)
80 2qby_A CDC6 homolog 1, cell di 99.3 1.4E-11 4.8E-16 129.9 16.9 212 277-607 20-253 (386)
81 1a5t_A Delta prime, HOLB; zinc 99.3 1.5E-11 5.3E-16 130.5 16.6 157 331-599 25-205 (334)
82 1r6b_X CLPA protein; AAA+, N-t 99.3 1.7E-11 5.9E-16 143.4 18.3 207 278-604 187-407 (758)
83 2p65_A Hypothetical protein PF 99.3 3.7E-12 1.3E-16 120.5 8.6 117 277-434 22-149 (187)
84 2gno_A DNA polymerase III, gam 99.3 1.4E-11 4.8E-16 130.0 11.4 144 281-551 1-150 (305)
85 3pxi_A Negative regulator of g 99.3 4.4E-12 1.5E-16 148.7 7.8 169 279-584 182-360 (758)
86 1w5s_A Origin recognition comp 99.0 5.2E-09 1.8E-13 111.9 17.1 220 277-606 22-273 (412)
87 4akg_A Glutathione S-transfera 98.7 2.4E-08 8.4E-13 129.8 11.5 159 330-555 1267-1433(2695)
88 3ec2_A DNA replication protein 98.6 8.7E-08 3E-12 91.7 8.4 82 331-434 39-127 (180)
89 2qen_A Walker-type ATPase; unk 98.6 1.5E-06 5.1E-11 90.2 18.2 51 279-365 14-64 (350)
90 2w58_A DNAI, primosome compone 98.4 2.8E-07 9.6E-12 89.5 5.8 37 331-367 55-94 (202)
91 1jr3_D DNA polymerase III, del 98.3 2.4E-06 8.1E-11 90.2 10.6 167 331-604 19-190 (343)
92 4akg_A Glutathione S-transfera 98.3 1.1E-05 3.6E-10 105.6 18.4 67 331-410 646-712 (2695)
93 2kjq_A DNAA-related protein; s 98.3 1.7E-06 5.9E-11 81.5 8.3 69 331-434 37-108 (149)
94 2fna_A Conserved hypothetical 98.3 4.6E-06 1.6E-10 86.6 12.1 36 331-366 31-66 (357)
95 3vkg_A Dynein heavy chain, cyt 98.1 2.2E-06 7.6E-11 112.6 8.4 151 331-553 1305-1469(3245)
96 1u0j_A DNA replication protein 98.1 6.3E-06 2.1E-10 85.4 9.5 25 331-355 105-129 (267)
97 3cmw_A Protein RECA, recombina 98.1 7.4E-06 2.5E-10 103.0 11.0 100 331-435 1083-1203(1706)
98 2qgz_A Helicase loader, putati 98.0 4.8E-07 1.6E-11 95.2 -1.0 37 331-367 153-193 (308)
99 1tue_A Replication protein E1; 97.9 9.1E-06 3.1E-10 81.3 5.0 77 331-440 59-135 (212)
100 2vhj_A Ntpase P4, P4; non- hyd 97.7 2.8E-05 9.4E-10 82.8 5.3 72 331-410 124-197 (331)
101 3vkg_A Dynein heavy chain, cyt 97.7 0.00023 7.8E-09 94.1 14.4 67 331-410 605-671 (3245)
102 2r2a_A Uncharacterized protein 97.7 4E-05 1.4E-09 75.9 5.8 74 331-410 6-102 (199)
103 3cmu_A Protein RECA, recombina 97.3 0.00027 9.4E-09 90.1 8.1 101 330-434 1427-1547(2050)
104 3trf_A Shikimate kinase, SK; a 97.2 0.0002 6.7E-09 68.2 3.9 32 331-362 6-37 (185)
105 1qzm_A ATP-dependent protease 97.2 0.0011 3.7E-08 58.2 8.2 71 538-612 1-71 (94)
106 1qhx_A CPT, protein (chloramph 97.2 0.00032 1.1E-08 66.1 5.3 34 331-364 4-37 (178)
107 3upu_A ATP-dependent DNA helic 97.1 0.0014 4.9E-08 72.1 10.8 89 331-434 46-153 (459)
108 2orw_A Thymidine kinase; TMTK, 97.1 0.00082 2.8E-08 65.2 7.9 24 331-354 4-27 (184)
109 3vaa_A Shikimate kinase, SK; s 97.1 0.00027 9.2E-09 68.7 3.9 32 331-362 26-57 (199)
110 1ye8_A Protein THEP1, hypothet 97.1 0.0013 4.4E-08 63.6 8.3 27 332-358 2-28 (178)
111 3kb2_A SPBC2 prophage-derived 97.0 0.00048 1.6E-08 64.1 4.2 31 332-362 3-33 (173)
112 1zuh_A Shikimate kinase; alpha 96.9 0.00056 1.9E-08 64.2 3.7 30 331-360 8-37 (168)
113 1via_A Shikimate kinase; struc 96.9 0.00047 1.6E-08 65.2 3.2 29 332-360 6-34 (175)
114 2iyv_A Shikimate kinase, SK; t 96.8 0.00058 2E-08 64.9 3.6 31 331-361 3-33 (184)
115 2rhm_A Putative kinase; P-loop 96.8 0.00066 2.2E-08 64.6 3.8 30 331-360 6-35 (193)
116 3iij_A Coilin-interacting nucl 96.8 0.00058 2E-08 64.8 3.4 30 331-360 12-41 (180)
117 1kag_A SKI, shikimate kinase I 96.8 0.00066 2.3E-08 63.6 3.3 29 331-359 5-33 (173)
118 2cdn_A Adenylate kinase; phosp 96.7 0.001 3.4E-08 64.4 4.4 31 331-361 21-51 (201)
119 1tev_A UMP-CMP kinase; ploop, 96.7 0.00089 3E-08 63.5 3.5 29 331-359 4-32 (196)
120 2ze6_A Isopentenyl transferase 96.7 0.001 3.6E-08 67.5 4.2 32 332-363 3-34 (253)
121 1y63_A LMAJ004144AAA protein; 96.7 0.00078 2.7E-08 64.6 3.1 29 331-359 11-40 (184)
122 1zp6_A Hypothetical protein AT 96.7 0.00095 3.3E-08 63.6 3.6 36 331-366 10-45 (191)
123 2ehv_A Hypothetical protein PH 96.7 0.0047 1.6E-07 60.9 8.9 33 331-363 31-67 (251)
124 2c95_A Adenylate kinase 1; tra 96.6 0.00096 3.3E-08 63.6 3.5 31 331-361 10-40 (196)
125 3lw7_A Adenylate kinase relate 96.6 0.00094 3.2E-08 61.7 3.2 29 331-360 2-30 (179)
126 1aky_A Adenylate kinase; ATP:A 96.6 0.0011 3.7E-08 65.2 3.6 31 331-361 5-35 (220)
127 3t61_A Gluconokinase; PSI-biol 96.6 0.0012 4.2E-08 63.8 3.9 30 331-360 19-48 (202)
128 1e6c_A Shikimate kinase; phosp 96.6 0.001 3.4E-08 62.2 3.2 30 331-360 3-32 (173)
129 2pt5_A Shikimate kinase, SK; a 96.5 0.0014 4.8E-08 61.0 3.7 30 332-361 2-31 (168)
130 2bwj_A Adenylate kinase 5; pho 96.5 0.0013 4.4E-08 62.8 3.4 29 331-359 13-41 (199)
131 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0055 1.9E-07 59.4 7.9 33 331-363 24-59 (235)
132 2b8t_A Thymidine kinase; deoxy 96.5 0.016 5.4E-07 58.3 11.4 32 331-362 13-47 (223)
133 3cm0_A Adenylate kinase; ATP-b 96.5 0.0017 5.7E-08 61.6 4.1 29 331-359 5-33 (186)
134 1knq_A Gluconate kinase; ALFA/ 96.5 0.0017 5.7E-08 61.2 4.0 34 331-366 9-42 (175)
135 3e1s_A Exodeoxyribonuclease V, 96.5 0.0046 1.6E-07 70.4 8.4 31 331-361 205-238 (574)
136 3dl0_A Adenylate kinase; phosp 96.5 0.0014 5E-08 63.9 3.6 30 332-361 2-31 (216)
137 1qf9_A UMP/CMP kinase, protein 96.5 0.0014 4.8E-08 61.9 3.4 30 331-360 7-36 (194)
138 1kht_A Adenylate kinase; phosp 96.4 0.0012 4.1E-08 62.5 2.8 25 331-355 4-28 (192)
139 3kl4_A SRP54, signal recogniti 96.4 0.014 4.8E-07 64.3 11.7 36 329-364 96-134 (433)
140 2vli_A Antibiotic resistance p 96.4 0.0014 4.9E-08 61.8 3.3 29 331-359 6-34 (183)
141 3fb4_A Adenylate kinase; psych 96.4 0.0016 5.6E-08 63.4 3.8 30 332-361 2-31 (216)
142 1ly1_A Polynucleotide kinase; 96.4 0.0015 5.2E-08 61.1 3.2 26 331-356 3-29 (181)
143 1ak2_A Adenylate kinase isoenz 96.4 0.0017 5.8E-08 64.6 3.7 31 331-361 17-47 (233)
144 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0058 2E-07 62.0 7.6 36 331-366 5-43 (260)
145 1zd8_A GTP:AMP phosphotransfer 96.4 0.0016 5.5E-08 64.3 3.3 30 331-360 8-37 (227)
146 2p5t_B PEZT; postsegregational 96.3 0.002 6.8E-08 65.2 3.9 37 331-367 33-69 (253)
147 2cvh_A DNA repair and recombin 96.3 0.018 6.2E-07 55.6 10.5 35 331-365 21-55 (220)
148 1ukz_A Uridylate kinase; trans 96.3 0.002 6.7E-08 62.2 3.5 31 331-361 16-46 (203)
149 4eun_A Thermoresistant glucoki 96.3 0.0026 8.9E-08 61.6 4.4 34 331-366 30-63 (200)
150 3be4_A Adenylate kinase; malar 96.3 0.0021 7.1E-08 63.3 3.6 31 331-361 6-36 (217)
151 1zak_A Adenylate kinase; ATP:A 96.3 0.0014 4.7E-08 64.5 2.2 29 331-359 6-34 (222)
152 3tlx_A Adenylate kinase 2; str 96.3 0.0021 7.1E-08 64.8 3.6 31 331-361 30-60 (243)
153 1n0w_A DNA repair protein RAD5 96.3 0.0052 1.8E-07 60.4 6.4 35 331-365 25-68 (243)
154 2pez_A Bifunctional 3'-phospho 96.2 0.0041 1.4E-07 58.9 5.3 36 331-366 6-44 (179)
155 1e4v_A Adenylate kinase; trans 96.2 0.0025 8.4E-08 62.4 3.7 30 332-361 2-31 (214)
156 2zr9_A Protein RECA, recombina 96.2 0.0095 3.3E-07 63.6 8.4 79 331-409 62-153 (349)
157 1gvn_B Zeta; postsegregational 96.2 0.0033 1.1E-07 65.2 4.5 36 331-366 34-69 (287)
158 2pbr_A DTMP kinase, thymidylat 96.2 0.0043 1.5E-07 58.7 4.9 31 332-362 2-35 (195)
159 3crm_A TRNA delta(2)-isopenten 96.1 0.0031 1.1E-07 67.0 4.2 35 331-365 6-40 (323)
160 3sr0_A Adenylate kinase; phosp 96.1 0.0035 1.2E-07 62.1 4.4 33 332-366 2-34 (206)
161 2fz4_A DNA repair protein RAD2 96.1 0.014 4.7E-07 58.5 8.7 34 331-364 109-142 (237)
162 2jaq_A Deoxyguanosine kinase; 96.1 0.0037 1.3E-07 59.7 4.1 28 332-359 2-29 (205)
163 1cke_A CK, MSSA, protein (cyti 96.1 0.0041 1.4E-07 60.8 4.5 29 331-359 6-34 (227)
164 3umf_A Adenylate kinase; rossm 96.0 0.004 1.4E-07 62.4 4.3 34 331-366 30-63 (217)
165 2r8r_A Sensor protein; KDPD, P 96.0 0.036 1.2E-06 56.0 11.3 33 331-363 7-42 (228)
166 1svm_A Large T antigen; AAA+ f 96.0 0.0036 1.2E-07 67.8 4.2 61 331-409 170-230 (377)
167 3uie_A Adenylyl-sulfate kinase 96.0 0.0063 2.2E-07 58.9 5.3 36 331-366 26-64 (200)
168 1nks_A Adenylate kinase; therm 96.0 0.0028 9.6E-08 59.8 2.6 24 332-355 3-26 (194)
169 2if2_A Dephospho-COA kinase; a 95.9 0.0034 1.2E-07 60.5 3.1 29 332-361 3-31 (204)
170 2xb4_A Adenylate kinase; ATP-b 95.9 0.0035 1.2E-07 62.0 3.2 29 332-360 2-30 (223)
171 3dm5_A SRP54, signal recogniti 95.9 0.023 8E-07 62.7 10.0 38 329-366 99-139 (443)
172 3hr8_A Protein RECA; alpha and 95.9 0.018 6.2E-07 61.8 8.9 75 331-409 62-153 (356)
173 2z0h_A DTMP kinase, thymidylat 95.9 0.0066 2.3E-07 57.7 4.8 30 333-362 3-35 (197)
174 2v54_A DTMP kinase, thymidylat 95.9 0.0052 1.8E-07 58.9 4.1 32 331-362 5-37 (204)
175 3ake_A Cytidylate kinase; CMP 95.9 0.0049 1.7E-07 59.1 3.9 29 332-360 4-32 (208)
176 3a8t_A Adenylate isopentenyltr 95.8 0.0037 1.2E-07 66.8 2.9 35 331-365 41-75 (339)
177 1uf9_A TT1252 protein; P-loop, 95.8 0.0052 1.8E-07 58.8 3.6 29 331-360 9-37 (203)
178 3jvv_A Twitching mobility prot 95.7 0.022 7.6E-07 61.0 8.7 24 331-354 124-147 (356)
179 2plr_A DTMP kinase, probable t 95.7 0.0067 2.3E-07 58.2 4.2 27 331-357 5-31 (213)
180 2bbw_A Adenylate kinase 4, AK4 95.7 0.0071 2.4E-07 60.5 4.5 28 331-358 28-55 (246)
181 2wwf_A Thymidilate kinase, put 95.7 0.0032 1.1E-07 60.7 1.9 31 331-361 11-41 (212)
182 1jjv_A Dephospho-COA kinase; P 95.7 0.0047 1.6E-07 59.7 3.1 29 331-360 3-31 (206)
183 3nwj_A ATSK2; P loop, shikimat 95.7 0.0047 1.6E-07 63.0 3.2 30 331-360 49-78 (250)
184 3io5_A Recombination and repai 95.6 0.013 4.3E-07 62.4 6.0 79 330-409 28-125 (333)
185 1nn5_A Similar to deoxythymidy 95.6 0.0039 1.3E-07 60.2 1.9 28 331-358 10-37 (215)
186 3r20_A Cytidylate kinase; stru 95.5 0.009 3.1E-07 60.5 4.5 29 331-359 10-38 (233)
187 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.029 1E-06 59.3 8.4 34 331-364 172-207 (330)
188 3cmu_A Protein RECA, recombina 95.5 0.023 7.9E-07 72.8 8.8 81 329-412 1080-1176(2050)
189 3foz_A TRNA delta(2)-isopenten 95.5 0.0078 2.7E-07 63.6 3.9 36 331-366 11-46 (316)
190 2yvu_A Probable adenylyl-sulfa 95.5 0.015 5.2E-07 55.2 5.6 35 331-365 14-51 (186)
191 2qor_A Guanylate kinase; phosp 95.4 0.0082 2.8E-07 58.3 3.6 25 331-355 13-37 (204)
192 2grj_A Dephospho-COA kinase; T 95.4 0.0081 2.8E-07 58.8 3.4 34 331-366 13-46 (192)
193 4e22_A Cytidylate kinase; P-lo 95.4 0.011 3.7E-07 59.8 4.3 29 331-359 28-56 (252)
194 1q3t_A Cytidylate kinase; nucl 95.4 0.0089 3E-07 59.5 3.7 29 331-359 17-45 (236)
195 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0061 2.1E-07 65.6 2.6 30 331-360 25-54 (359)
196 1vht_A Dephospho-COA kinase; s 95.3 0.0087 3E-07 58.4 3.4 29 331-360 5-33 (218)
197 2h92_A Cytidylate kinase; ross 95.3 0.0086 2.9E-07 58.3 3.3 30 331-360 4-33 (219)
198 1uj2_A Uridine-cytidine kinase 95.3 0.015 5E-07 58.5 5.1 37 331-367 23-67 (252)
199 1kgd_A CASK, peripheral plasma 95.3 0.011 3.7E-07 56.4 3.8 25 331-355 6-30 (180)
200 1u94_A RECA protein, recombina 95.2 0.025 8.6E-07 60.6 7.0 76 331-409 64-155 (356)
201 3cmw_A Protein RECA, recombina 95.2 0.019 6.4E-07 72.7 6.6 80 330-409 732-824 (1706)
202 1pzn_A RAD51, DNA repair and r 95.2 0.023 7.7E-07 60.6 6.4 35 331-365 132-175 (349)
203 2z43_A DNA repair and recombin 95.2 0.025 8.6E-07 59.3 6.6 35 331-365 108-151 (324)
204 2j41_A Guanylate kinase; GMP, 95.1 0.01 3.6E-07 56.8 3.3 24 331-354 7-30 (207)
205 2qt1_A Nicotinamide riboside k 95.1 0.0073 2.5E-07 58.5 2.3 34 331-366 22-56 (207)
206 2qmh_A HPR kinase/phosphorylas 95.1 0.0075 2.6E-07 60.0 2.3 40 326-366 30-69 (205)
207 3exa_A TRNA delta(2)-isopenten 95.1 0.011 3.6E-07 62.8 3.6 34 331-364 4-37 (322)
208 1ltq_A Polynucleotide kinase; 95.1 0.0075 2.6E-07 61.8 2.3 29 331-359 3-32 (301)
209 3tr0_A Guanylate kinase, GMP k 95.1 0.013 4.4E-07 56.1 3.8 24 331-354 8-31 (205)
210 3d3q_A TRNA delta(2)-isopenten 95.0 0.012 4E-07 63.0 3.6 33 331-363 8-40 (340)
211 3tau_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 57.5 3.4 25 331-355 9-33 (208)
212 1m7g_A Adenylylsulfate kinase; 95.0 0.017 5.9E-07 56.2 4.5 36 331-366 26-65 (211)
213 1g5t_A COB(I)alamin adenosyltr 95.0 0.088 3E-06 52.0 9.5 33 330-362 28-63 (196)
214 3eph_A TRNA isopentenyltransfe 94.9 0.014 4.9E-07 63.7 3.8 33 331-363 3-35 (409)
215 3asz_A Uridine kinase; cytidin 94.9 0.012 4E-07 57.0 2.8 25 331-355 7-31 (211)
216 1xp8_A RECA protein, recombina 94.8 0.03 1E-06 60.3 6.2 35 331-365 75-112 (366)
217 2bdt_A BH3686; alpha-beta prot 94.8 0.014 4.8E-07 55.6 3.2 34 331-365 3-36 (189)
218 1w36_D RECD, exodeoxyribonucle 94.8 0.051 1.7E-06 62.2 8.3 24 331-354 165-188 (608)
219 3c8u_A Fructokinase; YP_612366 94.8 0.015 5.3E-07 56.6 3.5 25 331-355 23-47 (208)
220 3a00_A Guanylate kinase, GMP k 94.7 0.017 5.7E-07 55.3 3.4 25 331-355 2-26 (186)
221 1lvg_A Guanylate kinase, GMP k 94.6 0.018 6.1E-07 56.0 3.5 25 331-355 5-29 (198)
222 3fdi_A Uncharacterized protein 94.6 0.026 8.9E-07 55.3 4.5 29 331-359 7-35 (201)
223 3lda_A DNA repair protein RAD5 94.5 0.083 2.8E-06 57.5 8.7 35 331-365 179-222 (400)
224 1w4r_A Thymidine kinase; type 94.5 0.12 4.3E-06 50.9 9.2 33 331-363 21-56 (195)
225 2f6r_A COA synthase, bifunctio 94.5 0.018 6.3E-07 59.2 3.3 33 331-366 76-108 (281)
226 1rz3_A Hypothetical protein rb 94.4 0.042 1.4E-06 53.2 5.5 34 331-364 23-59 (201)
227 3zvl_A Bifunctional polynucleo 94.4 0.012 4E-07 64.2 1.6 35 330-366 258-292 (416)
228 1v5w_A DMC1, meiotic recombina 94.3 0.046 1.6E-06 57.9 6.2 35 331-365 123-166 (343)
229 1ex7_A Guanylate kinase; subst 94.3 0.027 9.2E-07 55.0 4.0 28 331-358 2-29 (186)
230 1z6g_A Guanylate kinase; struc 94.3 0.023 7.7E-07 56.2 3.5 32 323-354 15-47 (218)
231 1xx6_A Thymidine kinase; NESG, 94.3 0.1 3.5E-06 51.0 8.1 31 331-361 9-42 (191)
232 2v3c_C SRP54, signal recogniti 94.3 0.052 1.8E-06 59.7 6.6 36 330-365 99-137 (432)
233 2jeo_A Uridine-cytidine kinase 94.3 0.027 9.1E-07 56.4 4.0 34 324-357 18-52 (245)
234 1znw_A Guanylate kinase, GMP k 94.2 0.028 9.7E-07 54.6 3.8 25 331-355 21-45 (207)
235 2j37_W Signal recognition part 94.1 0.26 9E-06 55.2 11.8 35 330-364 101-138 (504)
236 4a74_A DNA repair and recombin 94.0 0.032 1.1E-06 54.1 3.7 24 331-354 26-49 (231)
237 3kta_A Chromosome segregation 93.9 0.039 1.3E-06 52.0 4.1 31 325-355 21-51 (182)
238 1gtv_A TMK, thymidylate kinase 93.9 0.018 6.2E-07 55.5 1.7 25 332-356 2-26 (214)
239 1x6v_B Bifunctional 3'-phospho 93.9 0.044 1.5E-06 63.1 5.1 36 331-366 53-91 (630)
240 3ney_A 55 kDa erythrocyte memb 93.8 0.048 1.6E-06 53.8 4.7 25 331-355 20-44 (197)
241 2i1q_A DNA repair and recombin 93.8 0.061 2.1E-06 56.0 5.6 23 331-353 99-121 (322)
242 1htw_A HI0065; nucleotide-bind 93.7 0.04 1.4E-06 52.1 3.8 24 331-354 34-57 (158)
243 4gp7_A Metallophosphoesterase; 93.7 0.034 1.2E-06 52.6 3.3 20 331-350 10-29 (171)
244 3b6e_A Interferon-induced heli 93.7 0.058 2E-06 51.5 4.9 23 331-353 49-71 (216)
245 2dr3_A UPF0273 protein PH0284; 93.6 0.07 2.4E-06 52.2 5.5 33 331-363 24-59 (247)
246 1zu4_A FTSY; GTPase, signal re 93.6 0.13 4.6E-06 54.1 7.9 35 330-364 105-142 (320)
247 2eyu_A Twitching motility prot 93.4 0.046 1.6E-06 55.9 3.8 24 331-354 26-49 (261)
248 1s96_A Guanylate kinase, GMP k 93.3 0.049 1.7E-06 54.2 3.8 25 331-355 17-41 (219)
249 3gmt_A Adenylate kinase; ssgci 93.2 0.051 1.8E-06 54.9 3.8 30 331-360 9-38 (230)
250 1tf7_A KAIC; homohexamer, hexa 93.2 0.26 8.9E-06 55.1 9.9 35 331-365 40-78 (525)
251 3lnc_A Guanylate kinase, GMP k 93.1 0.034 1.2E-06 54.8 2.3 24 331-354 28-52 (231)
252 4eaq_A DTMP kinase, thymidylat 93.0 0.06 2.1E-06 53.7 3.9 25 331-355 27-51 (229)
253 3hdt_A Putative kinase; struct 93.0 0.065 2.2E-06 53.7 4.1 29 331-359 15-43 (223)
254 2j9r_A Thymidine kinase; TK1, 93.0 0.32 1.1E-05 48.6 9.1 33 331-363 29-64 (214)
255 2v9p_A Replication protein E1; 92.8 0.061 2.1E-06 56.5 3.8 24 331-354 127-150 (305)
256 1rj9_A FTSY, signal recognitio 92.7 0.065 2.2E-06 56.1 3.8 26 329-354 101-126 (304)
257 1vma_A Cell division protein F 92.7 0.1 3.5E-06 54.7 5.3 35 330-364 104-141 (306)
258 3aez_A Pantothenate kinase; tr 92.7 0.066 2.3E-06 56.2 3.8 25 331-355 91-115 (312)
259 2i3b_A HCR-ntpase, human cance 92.7 0.063 2.2E-06 52.2 3.4 24 331-354 2-25 (189)
260 1a7j_A Phosphoribulokinase; tr 92.6 0.051 1.7E-06 56.3 2.9 37 331-367 6-45 (290)
261 2axn_A 6-phosphofructo-2-kinas 92.6 0.077 2.6E-06 59.6 4.5 37 330-366 35-74 (520)
262 3b9q_A Chloroplast SRP recepto 92.5 0.071 2.4E-06 55.7 3.8 25 330-354 100-124 (302)
263 1sky_E F1-ATPase, F1-ATP synth 92.5 0.19 6.7E-06 55.8 7.4 24 331-354 152-175 (473)
264 1odf_A YGR205W, hypothetical 3 92.4 0.075 2.6E-06 55.2 3.8 25 331-355 32-56 (290)
265 1sq5_A Pantothenate kinase; P- 92.4 0.13 4.3E-06 53.6 5.5 25 331-355 81-105 (308)
266 2ffh_A Protein (FFH); SRP54, s 92.3 0.21 7.3E-06 54.8 7.4 36 329-364 97-135 (425)
267 1m8p_A Sulfate adenylyltransfe 92.3 0.09 3.1E-06 59.8 4.6 36 331-366 397-436 (573)
268 1nlf_A Regulatory protein REPA 92.2 0.08 2.7E-06 53.8 3.7 24 331-354 31-54 (279)
269 1cr0_A DNA primase/helicase; R 92.2 0.08 2.7E-06 54.2 3.7 24 331-354 36-59 (296)
270 3p32_A Probable GTPase RV1496/ 92.2 0.18 6E-06 53.6 6.5 33 331-363 80-115 (355)
271 2ewv_A Twitching motility prot 92.1 0.081 2.8E-06 56.8 3.8 24 331-354 137-160 (372)
272 3e70_C DPA, signal recognition 92.1 0.084 2.9E-06 55.9 3.8 25 330-354 129-153 (328)
273 2onk_A Molybdate/tungstate ABC 92.1 0.065 2.2E-06 54.1 2.7 33 322-354 16-48 (240)
274 2px0_A Flagellar biosynthesis 91.9 0.094 3.2E-06 54.6 3.7 37 329-365 104-144 (296)
275 3tqc_A Pantothenate kinase; bi 91.8 0.1 3.4E-06 55.3 3.9 25 331-355 93-117 (321)
276 2og2_A Putative signal recogni 91.7 0.099 3.4E-06 56.1 3.8 25 330-354 157-181 (359)
277 1bif_A 6-phosphofructo-2-kinas 91.7 0.057 2E-06 59.6 2.0 26 330-355 39-64 (469)
278 2zts_A Putative uncharacterize 91.7 0.19 6.6E-06 49.0 5.6 33 331-363 31-67 (251)
279 3tif_A Uncharacterized ABC tra 91.6 0.084 2.9E-06 53.0 2.9 34 322-355 22-56 (235)
280 2pcj_A ABC transporter, lipopr 91.5 0.084 2.9E-06 52.5 2.8 32 323-354 22-54 (224)
281 3fvq_A Fe(3+) IONS import ATP- 91.5 0.072 2.5E-06 57.2 2.4 33 322-354 21-54 (359)
282 2iut_A DNA translocase FTSK; n 91.4 1.1 3.7E-05 51.0 12.0 35 331-365 215-256 (574)
283 3sfz_A APAF-1, apoptotic pepti 91.3 0.51 1.8E-05 56.8 10.0 45 279-353 126-170 (1249)
284 3b85_A Phosphate starvation-in 91.3 0.087 3E-06 52.0 2.6 23 331-353 23-45 (208)
285 1lw7_A Transcriptional regulat 91.3 0.12 4E-06 55.0 3.8 26 331-356 171-196 (365)
286 2f1r_A Molybdopterin-guanine d 91.2 0.081 2.8E-06 50.7 2.2 25 331-355 3-27 (171)
287 3rlf_A Maltose/maltodextrin im 91.1 0.084 2.9E-06 57.2 2.5 34 322-355 20-54 (381)
288 1c9k_A COBU, adenosylcobinamid 91.1 0.13 4.3E-06 50.1 3.6 31 333-364 2-32 (180)
289 1p9r_A General secretion pathw 91.1 0.14 4.7E-06 56.1 4.2 25 331-355 168-192 (418)
290 1z6t_A APAF-1, apoptotic prote 91.1 0.19 6.6E-06 56.2 5.6 44 279-352 126-169 (591)
291 2ocp_A DGK, deoxyguanosine kin 91.1 0.13 4.3E-06 51.1 3.6 25 331-355 3-27 (241)
292 2cbz_A Multidrug resistance-as 91.1 0.1 3.5E-06 52.4 2.9 34 321-354 21-55 (237)
293 3vkw_A Replicase large subunit 91.1 0.37 1.3E-05 53.2 7.6 22 331-352 162-183 (446)
294 3tqf_A HPR(Ser) kinase; transf 91.1 0.12 4.2E-06 50.3 3.3 36 327-363 13-48 (181)
295 3sop_A Neuronal-specific septi 91.0 0.12 4.1E-06 53.1 3.5 24 331-354 3-26 (270)
296 2gza_A Type IV secretion syste 91.0 0.091 3.1E-06 56.1 2.6 32 331-362 176-209 (361)
297 3cr8_A Sulfate adenylyltranfer 91.0 0.099 3.4E-06 59.3 3.0 36 331-366 370-409 (552)
298 1p5z_B DCK, deoxycytidine kina 90.9 0.063 2.1E-06 54.2 1.2 25 331-355 25-49 (263)
299 2it1_A 362AA long hypothetical 90.9 0.092 3.1E-06 56.5 2.5 34 322-355 20-54 (362)
300 1z47_A CYSA, putative ABC-tran 90.9 0.088 3E-06 56.5 2.4 35 321-355 31-66 (355)
301 4b3f_X DNA-binding protein smu 90.8 0.18 6.2E-06 57.8 5.1 33 331-363 206-241 (646)
302 1u8z_A RAS-related protein RAL 90.8 0.15 5.1E-06 46.0 3.5 24 330-353 4-27 (168)
303 1g8f_A Sulfate adenylyltransfe 90.8 0.12 4.2E-06 58.0 3.5 26 331-356 396-421 (511)
304 2yyz_A Sugar ABC transporter, 90.8 0.096 3.3E-06 56.3 2.5 32 323-354 21-53 (359)
305 2d2e_A SUFC protein; ABC-ATPas 90.8 0.13 4.5E-06 52.0 3.5 31 323-353 21-52 (250)
306 2f9l_A RAB11B, member RAS onco 90.7 0.14 4.7E-06 48.8 3.4 24 331-354 6-29 (199)
307 2ff7_A Alpha-hemolysin translo 90.7 0.092 3.2E-06 53.1 2.3 33 322-354 26-59 (247)
308 1b0u_A Histidine permease; ABC 90.7 0.11 3.9E-06 52.9 2.9 34 322-355 23-57 (262)
309 1oix_A RAS-related protein RAB 90.7 0.13 4.4E-06 48.9 3.1 24 331-354 30-53 (191)
310 1g6h_A High-affinity branched- 90.7 0.12 4E-06 52.6 2.9 33 322-354 24-57 (257)
311 1v43_A Sugar-binding transport 90.6 0.099 3.4E-06 56.4 2.5 33 322-354 28-61 (372)
312 1ek0_A Protein (GTP-binding pr 90.6 0.14 4.9E-06 46.3 3.3 23 331-353 4-26 (170)
313 1mv5_A LMRA, multidrug resista 90.6 0.12 4E-06 52.1 2.9 34 321-354 18-52 (243)
314 1kao_A RAP2A; GTP-binding prot 90.6 0.16 5.3E-06 45.8 3.5 23 331-353 4-26 (167)
315 3lxx_A GTPase IMAP family memb 90.5 0.55 1.9E-05 46.2 7.7 23 330-352 29-51 (239)
316 1ji0_A ABC transporter; ATP bi 90.5 0.12 4.2E-06 51.9 2.9 33 323-355 24-57 (240)
317 2dyk_A GTP-binding protein; GT 90.5 0.16 5.4E-06 45.7 3.4 23 331-353 2-24 (161)
318 2zu0_C Probable ATP-dependent 90.5 0.14 4.9E-06 52.3 3.4 32 323-354 38-70 (267)
319 1xjc_A MOBB protein homolog; s 90.5 0.16 5.6E-06 48.8 3.6 24 331-354 5-28 (169)
320 1sgw_A Putative ABC transporte 90.5 0.12 4.1E-06 51.3 2.7 33 322-354 26-59 (214)
321 2ixe_A Antigen peptide transpo 90.4 0.1 3.5E-06 53.6 2.3 33 322-354 36-69 (271)
322 1ls1_A Signal recognition part 90.4 0.31 1E-05 50.6 5.9 35 329-363 97-134 (295)
323 2pze_A Cystic fibrosis transme 90.4 0.13 4.4E-06 51.4 2.9 34 322-355 25-59 (229)
324 1nrj_B SR-beta, signal recogni 90.4 0.17 5.9E-06 48.6 3.7 24 331-354 13-36 (218)
325 4g1u_C Hemin import ATP-bindin 90.3 0.13 4.4E-06 52.7 2.9 33 322-354 28-61 (266)
326 3gfo_A Cobalt import ATP-bindi 90.3 0.13 4.4E-06 53.1 2.9 35 321-355 24-59 (275)
327 1np6_A Molybdopterin-guanine d 90.3 0.16 5.5E-06 48.8 3.4 24 331-354 7-30 (174)
328 2ce2_X GTPase HRAS; signaling 90.2 0.17 5.8E-06 45.3 3.4 23 331-353 4-26 (166)
329 2olj_A Amino acid ABC transpor 90.2 0.13 4.6E-06 52.6 2.9 33 323-355 42-75 (263)
330 2yhs_A FTSY, cell division pro 90.2 0.16 5.5E-06 56.9 3.8 25 330-354 293-317 (503)
331 3thx_B DNA mismatch repair pro 90.2 0.21 7E-06 60.0 4.9 31 323-353 665-696 (918)
332 2ghi_A Transport protein; mult 90.2 0.14 4.6E-06 52.3 2.9 34 321-354 36-70 (260)
333 2oap_1 GSPE-2, type II secreti 90.2 0.11 3.8E-06 58.3 2.5 34 331-364 261-296 (511)
334 1z2a_A RAS-related protein RAB 90.1 0.18 6E-06 45.7 3.4 23 331-353 6-28 (168)
335 2qi9_C Vitamin B12 import ATP- 90.1 0.14 4.7E-06 52.0 2.9 33 323-355 18-51 (249)
336 2p6r_A Afuhel308 helicase; pro 90.1 1.2 4E-05 51.4 11.0 19 331-349 41-59 (702)
337 4edh_A DTMP kinase, thymidylat 90.0 0.17 5.8E-06 50.1 3.4 25 331-355 7-31 (213)
338 3thx_A DNA mismatch repair pro 90.0 0.6 2.1E-05 56.1 8.7 28 325-352 656-684 (934)
339 3gd7_A Fusion complex of cysti 90.0 0.12 4E-06 56.2 2.4 34 321-354 37-71 (390)
340 2wsm_A Hydrogenase expression/ 89.9 0.3 1E-05 47.0 5.1 25 331-355 31-55 (221)
341 2ihy_A ABC transporter, ATP-bi 89.9 0.14 4.9E-06 52.8 2.9 34 322-355 38-72 (279)
342 1vpl_A ABC transporter, ATP-bi 89.9 0.15 5E-06 52.1 2.9 33 322-354 32-65 (256)
343 1wb9_A DNA mismatch repair pro 89.9 0.38 1.3E-05 56.9 6.8 25 330-354 607-631 (800)
344 1f2t_A RAD50 ABC-ATPase; DNA d 89.9 0.24 8.2E-06 46.0 4.2 29 326-354 19-47 (149)
345 1oxx_K GLCV, glucose, ABC tran 89.8 0.085 2.9E-06 56.4 1.2 32 323-354 23-55 (353)
346 2h17_A ADP-ribosylation factor 89.8 0.16 5.6E-06 47.3 3.0 23 330-352 21-43 (181)
347 2yz2_A Putative ABC transporte 89.8 0.15 5.1E-06 52.1 2.9 33 322-354 24-57 (266)
348 4ag6_A VIRB4 ATPase, type IV s 89.8 0.29 1E-05 52.2 5.3 34 330-363 35-71 (392)
349 2a5j_A RAS-related protein RAB 89.7 0.25 8.6E-06 46.4 4.2 24 330-353 21-44 (191)
350 2ged_A SR-beta, signal recogni 89.7 0.21 7.2E-06 46.8 3.6 24 331-354 49-72 (193)
351 2nq2_C Hypothetical ABC transp 89.6 0.16 5.3E-06 51.7 2.9 34 322-355 22-56 (253)
352 1c1y_A RAS-related protein RAP 89.6 0.21 7.2E-06 45.1 3.5 22 331-352 4-25 (167)
353 1m2o_B GTP-binding protein SAR 89.6 0.19 6.6E-06 47.5 3.4 23 330-352 23-45 (190)
354 2wji_A Ferrous iron transport 89.6 0.2 6.8E-06 46.2 3.3 22 331-352 4-25 (165)
355 3con_A GTPase NRAS; structural 89.6 0.19 6.6E-06 46.9 3.3 25 329-353 20-44 (190)
356 2wjg_A FEOB, ferrous iron tran 89.5 0.22 7.4E-06 46.4 3.6 22 331-352 8-29 (188)
357 2lkc_A Translation initiation 89.4 0.26 8.8E-06 45.2 3.9 23 330-352 8-30 (178)
358 2h57_A ADP-ribosylation factor 89.4 0.16 5.5E-06 47.7 2.6 25 329-353 20-44 (190)
359 3ihw_A Centg3; RAS, centaurin, 89.4 0.22 7.7E-06 46.9 3.6 26 328-353 18-43 (184)
360 2nzj_A GTP-binding protein REM 89.3 0.2 7E-06 45.7 3.2 21 331-351 5-25 (175)
361 2pjz_A Hypothetical protein ST 89.3 0.14 4.7E-06 52.5 2.2 32 323-354 23-54 (263)
362 1z0j_A RAB-22, RAS-related pro 89.3 0.22 7.6E-06 45.1 3.4 24 331-354 7-30 (170)
363 3tui_C Methionine import ATP-b 89.3 0.15 5.1E-06 55.0 2.5 35 321-355 44-79 (366)
364 2a5y_B CED-4; apoptosis; HET: 89.3 0.33 1.1E-05 54.4 5.5 44 280-352 131-174 (549)
365 1r2q_A RAS-related protein RAB 89.2 0.22 7.4E-06 45.1 3.3 22 331-352 7-28 (170)
366 2zej_A Dardarin, leucine-rich 89.2 0.17 5.7E-06 47.6 2.5 22 331-352 3-24 (184)
367 1g29_1 MALK, maltose transport 89.2 0.2 6.8E-06 54.0 3.5 32 323-354 21-53 (372)
368 3v9p_A DTMP kinase, thymidylat 89.2 0.17 5.7E-06 50.9 2.6 24 331-354 26-49 (227)
369 4f4c_A Multidrug resistance pr 89.2 1.8 6.3E-05 53.8 12.5 43 322-364 435-480 (1321)
370 3d31_A Sulfate/molybdate ABC t 89.2 0.17 5.7E-06 54.1 2.8 34 322-355 17-51 (348)
371 1ky3_A GTP-binding protein YPT 89.1 0.23 7.9E-06 45.5 3.4 23 331-353 9-31 (182)
372 1j8m_F SRP54, signal recogniti 89.1 0.32 1.1E-05 50.6 4.9 36 330-365 98-136 (297)
373 1g16_A RAS-related protein SEC 89.0 0.23 8E-06 44.9 3.3 22 331-352 4-25 (170)
374 1z08_A RAS-related protein RAB 89.0 0.24 8.2E-06 44.9 3.4 23 331-353 7-29 (170)
375 1z06_A RAS-related protein RAB 89.0 0.23 8E-06 46.5 3.4 23 330-352 20-42 (189)
376 1wms_A RAB-9, RAB9, RAS-relate 88.9 0.24 8.3E-06 45.4 3.4 23 331-353 8-30 (177)
377 1xti_A Probable ATP-dependent 88.8 1.2 4E-05 46.4 9.0 21 331-351 46-66 (391)
378 3tmk_A Thymidylate kinase; pho 88.8 0.34 1.2E-05 48.2 4.6 27 331-357 6-32 (216)
379 2a9k_A RAS-related protein RAL 88.8 0.25 8.5E-06 45.5 3.4 24 330-353 18-41 (187)
380 3q85_A GTP-binding protein REM 88.6 0.25 8.5E-06 44.9 3.2 21 331-351 3-23 (169)
381 1r8s_A ADP-ribosylation factor 88.6 0.27 9.1E-06 44.5 3.4 22 332-353 2-23 (164)
382 3q72_A GTP-binding protein RAD 88.6 0.25 8.5E-06 44.8 3.2 21 331-351 3-23 (166)
383 3bc1_A RAS-related protein RAB 88.6 0.26 8.9E-06 45.6 3.4 22 331-352 12-33 (195)
384 2erx_A GTP-binding protein DI- 88.6 0.25 8.6E-06 44.7 3.2 22 331-352 4-25 (172)
385 1f6b_A SAR1; gtpases, N-termin 88.6 0.24 8.2E-06 47.3 3.2 22 330-351 25-46 (198)
386 2npi_A Protein CLP1; CLP1-PCF1 88.6 0.22 7.4E-06 55.2 3.3 24 331-354 139-162 (460)
387 3lv8_A DTMP kinase, thymidylat 88.6 0.27 9.4E-06 49.5 3.8 24 331-354 28-51 (236)
388 1upt_A ARL1, ADP-ribosylation 88.5 0.29 9.9E-06 44.4 3.6 22 331-352 8-29 (171)
389 2y8e_A RAB-protein 6, GH09086P 88.4 0.26 8.8E-06 45.1 3.2 22 331-352 15-36 (179)
390 3nh6_A ATP-binding cassette SU 88.3 0.14 4.9E-06 53.6 1.6 33 323-355 72-105 (306)
391 2fn4_A P23, RAS-related protei 88.2 0.31 1E-05 44.6 3.6 23 331-353 10-32 (181)
392 4i1u_A Dephospho-COA kinase; s 88.2 0.26 8.8E-06 49.0 3.2 31 331-362 10-40 (210)
393 1z0f_A RAB14, member RAS oncog 88.1 0.29 1E-05 44.7 3.4 23 331-353 16-38 (179)
394 3kkq_A RAS-related protein M-R 88.1 0.31 1E-05 45.1 3.5 24 330-353 18-41 (183)
395 3tw8_B RAS-related protein RAB 88.1 0.26 9.1E-06 45.1 3.1 21 331-351 10-30 (181)
396 2gj8_A MNME, tRNA modification 88.1 0.28 9.5E-06 45.7 3.3 23 331-353 5-27 (172)
397 2o8b_B DNA mismatch repair pro 88.0 0.41 1.4E-05 58.0 5.5 21 331-351 790-810 (1022)
398 4dsu_A GTPase KRAS, isoform 2B 88.0 0.3 1E-05 45.1 3.4 23 331-353 5-27 (189)
399 2bbs_A Cystic fibrosis transme 88.0 0.23 7.9E-06 51.6 2.8 33 322-354 55-88 (290)
400 2gks_A Bifunctional SAT/APS ki 88.0 0.42 1.4E-05 54.0 5.2 35 331-365 373-410 (546)
401 2vp4_A Deoxynucleoside kinase; 88.0 0.26 8.8E-06 48.7 3.1 23 331-353 21-43 (230)
402 3qks_A DNA double-strand break 88.0 0.33 1.1E-05 47.3 3.8 31 326-356 19-49 (203)
403 2xau_A PRE-mRNA-splicing facto 87.9 1 3.6E-05 52.8 8.7 21 331-351 110-130 (773)
404 3bh0_A DNAB-like replicative h 87.9 0.46 1.6E-05 49.5 5.1 33 331-363 69-104 (315)
405 4bas_A ADP-ribosylation factor 87.8 0.28 9.4E-06 46.0 3.1 22 330-351 17-38 (199)
406 2hxs_A RAB-26, RAS-related pro 87.8 0.31 1.1E-05 44.6 3.4 22 331-352 7-28 (178)
407 2gk6_A Regulator of nonsense t 87.8 0.28 9.5E-06 56.1 3.6 24 331-354 196-219 (624)
408 2xxa_A Signal recognition part 87.8 0.49 1.7E-05 51.9 5.4 38 329-366 99-140 (433)
409 1m7b_A RND3/RHOE small GTP-bin 87.7 0.31 1E-05 45.5 3.3 23 331-353 8-30 (184)
410 3clv_A RAB5 protein, putative; 87.7 0.34 1.2E-05 45.0 3.6 23 331-353 8-30 (208)
411 4tmk_A Protein (thymidylate ki 87.7 0.3 1E-05 48.4 3.3 24 331-354 4-27 (213)
412 3ld9_A DTMP kinase, thymidylat 87.7 0.34 1.2E-05 48.5 3.8 26 331-356 22-47 (223)
413 1svi_A GTP-binding protein YSX 87.6 0.32 1.1E-05 45.5 3.4 22 331-352 24-45 (195)
414 2oil_A CATX-8, RAS-related pro 87.6 0.32 1.1E-05 45.6 3.4 23 331-353 26-48 (193)
415 2bme_A RAB4A, RAS-related prot 87.6 0.32 1.1E-05 45.0 3.3 23 331-353 11-33 (186)
416 1wp9_A ATP-dependent RNA helic 87.6 0.85 2.9E-05 48.1 7.1 33 332-364 25-61 (494)
417 3c5c_A RAS-like protein 12; GD 87.6 0.32 1.1E-05 45.8 3.4 24 330-353 21-44 (187)
418 2efe_B Small GTP-binding prote 87.6 0.33 1.1E-05 44.6 3.4 23 331-353 13-35 (181)
419 3e2i_A Thymidine kinase; Zn-bi 87.6 0.78 2.7E-05 46.0 6.3 32 331-362 29-63 (219)
420 1yrb_A ATP(GTP)binding protein 87.5 0.59 2E-05 46.3 5.4 33 331-363 15-49 (262)
421 2bov_A RAla, RAS-related prote 87.5 0.34 1.2E-05 45.6 3.5 24 330-353 14-37 (206)
422 1pui_A ENGB, probable GTP-bind 87.5 0.18 6.3E-06 48.0 1.6 22 331-352 27-48 (210)
423 2g6b_A RAS-related protein RAB 87.4 0.34 1.2E-05 44.4 3.4 23 331-353 11-33 (180)
424 2hf9_A Probable hydrogenase ni 87.4 0.36 1.2E-05 46.6 3.7 24 331-354 39-62 (226)
425 3euj_A Chromosome partition pr 87.4 0.27 9.3E-06 54.8 3.1 33 322-354 21-53 (483)
426 3t1o_A Gliding protein MGLA; G 87.3 0.35 1.2E-05 45.0 3.4 24 331-354 15-38 (198)
427 2cxx_A Probable GTP-binding pr 87.3 0.32 1.1E-05 45.1 3.1 22 331-352 2-23 (190)
428 1mh1_A RAC1; GTP-binding, GTPa 87.3 0.35 1.2E-05 44.5 3.4 22 331-352 6-27 (186)
429 2iwr_A Centaurin gamma 1; ANK 87.3 0.28 9.6E-06 45.2 2.7 24 330-353 7-30 (178)
430 3qf7_A RAD50; ABC-ATPase, ATPa 87.1 0.29 9.9E-06 52.3 3.1 30 325-354 18-47 (365)
431 2obl_A ESCN; ATPase, hydrolase 87.1 0.52 1.8E-05 50.1 5.1 27 331-357 72-98 (347)
432 2qm8_A GTPase/ATPase; G protei 87.1 0.37 1.3E-05 50.9 3.8 24 331-354 56-79 (337)
433 3pqc_A Probable GTP-binding pr 87.0 0.34 1.2E-05 45.0 3.2 22 331-352 24-45 (195)
434 3k53_A Ferrous iron transport 87.0 0.34 1.2E-05 49.0 3.4 23 331-353 4-26 (271)
435 1moz_A ARL1, ADP-ribosylation 87.0 0.27 9.2E-06 45.4 2.4 21 331-351 19-39 (183)
436 1x3s_A RAS-related protein RAB 87.0 0.34 1.2E-05 45.1 3.2 24 330-353 15-38 (195)
437 2atv_A RERG, RAS-like estrogen 87.0 0.39 1.3E-05 45.3 3.6 23 331-353 29-51 (196)
438 3bwd_D RAC-like GTP-binding pr 86.9 0.41 1.4E-05 44.0 3.6 23 331-353 9-31 (182)
439 2dpy_A FLII, flagellum-specifi 86.9 0.53 1.8E-05 51.7 5.1 27 331-357 158-184 (438)
440 3tkl_A RAS-related protein RAB 86.9 0.38 1.3E-05 44.9 3.4 23 331-353 17-39 (196)
441 2gf9_A RAS-related protein RAB 86.7 0.39 1.3E-05 44.9 3.4 23 331-353 23-45 (189)
442 2r6a_A DNAB helicase, replicat 86.7 0.6 2.1E-05 51.1 5.4 33 331-363 204-240 (454)
443 3t5g_A GTP-binding protein RHE 86.6 0.39 1.3E-05 44.3 3.3 22 331-352 7-28 (181)
444 1ksh_A ARF-like protein 2; sma 86.6 0.38 1.3E-05 44.7 3.3 22 331-352 19-40 (186)
445 1tf7_A KAIC; homohexamer, hexa 86.6 0.38 1.3E-05 53.8 3.8 24 331-354 282-305 (525)
446 3ch4_B Pmkase, phosphomevalona 86.6 0.64 2.2E-05 46.0 5.0 37 329-365 10-47 (202)
447 1e9r_A Conjugal transfer prote 86.5 0.55 1.9E-05 50.7 5.0 35 330-364 53-90 (437)
448 1zd9_A ADP-ribosylation factor 86.4 0.41 1.4E-05 44.9 3.4 24 330-353 22-45 (188)
449 1vg8_A RAS-related protein RAB 86.4 0.41 1.4E-05 45.2 3.4 23 331-353 9-31 (207)
450 2p5s_A RAS and EF-hand domain 86.3 0.43 1.5E-05 45.2 3.5 24 330-353 28-51 (199)
451 3dz8_A RAS-related protein RAB 86.3 0.41 1.4E-05 44.9 3.3 24 331-354 24-47 (191)
452 2gf0_A GTP-binding protein DI- 86.3 0.44 1.5E-05 44.6 3.5 22 331-352 9-30 (199)
453 2fg5_A RAB-22B, RAS-related pr 86.2 0.41 1.4E-05 45.1 3.3 23 331-353 24-46 (192)
454 2gco_A H9, RHO-related GTP-bin 86.2 0.59 2E-05 44.4 4.5 24 330-353 25-48 (201)
455 1fzq_A ADP-ribosylation factor 86.2 0.4 1.4E-05 44.8 3.2 22 331-352 17-38 (181)
456 1zj6_A ADP-ribosylation factor 86.2 0.42 1.4E-05 44.6 3.3 22 331-352 17-38 (187)
457 3reg_A RHO-like small GTPase; 86.1 0.43 1.5E-05 44.8 3.4 23 331-353 24-46 (194)
458 1ko7_A HPR kinase/phosphatase; 86.1 0.37 1.3E-05 50.9 3.1 33 327-360 141-173 (314)
459 2b6h_A ADP-ribosylation factor 86.0 0.44 1.5E-05 45.1 3.4 21 331-351 30-50 (192)
460 3oes_A GTPase rhebl1; small GT 86.0 0.43 1.5E-05 45.3 3.3 24 330-353 24-47 (201)
461 2bcg_Y Protein YP2, GTP-bindin 86.0 0.43 1.5E-05 45.3 3.3 22 331-352 9-30 (206)
462 1zbd_A Rabphilin-3A; G protein 85.9 0.43 1.5E-05 45.1 3.2 22 331-352 9-30 (203)
463 2q6t_A DNAB replication FORK h 85.9 0.7 2.4E-05 50.5 5.3 33 331-363 201-237 (444)
464 2www_A Methylmalonic aciduria 85.8 0.98 3.4E-05 47.8 6.3 24 331-354 75-98 (349)
465 2fh5_B SR-beta, signal recogni 85.8 0.46 1.6E-05 45.3 3.5 23 331-353 8-30 (214)
466 2o5v_A DNA replication and rep 85.7 0.49 1.7E-05 50.7 3.9 32 323-354 19-50 (359)
467 2p67_A LAO/AO transport system 85.6 1 3.5E-05 47.4 6.3 24 331-354 57-80 (341)
468 4aby_A DNA repair protein RECN 85.6 0.19 6.5E-06 53.8 0.7 34 323-356 53-86 (415)
469 3cph_A RAS-related protein SEC 85.5 0.5 1.7E-05 44.8 3.5 22 331-352 21-42 (213)
470 1knx_A Probable HPR(Ser) kinas 85.4 0.51 1.7E-05 49.8 3.8 40 327-367 144-183 (312)
471 1gwn_A RHO-related GTP-binding 85.4 0.48 1.6E-05 45.7 3.3 23 331-353 29-51 (205)
472 3b5x_A Lipid A export ATP-bind 85.3 0.37 1.3E-05 54.5 2.9 34 321-354 359-393 (582)
473 2ew1_A RAS-related protein RAB 85.1 0.5 1.7E-05 45.5 3.3 23 331-353 27-49 (201)
474 2qnr_A Septin-2, protein NEDD5 85.0 0.42 1.4E-05 49.6 2.9 22 331-352 19-40 (301)
475 2atx_A Small GTP binding prote 84.9 0.52 1.8E-05 44.1 3.3 23 331-353 19-41 (194)
476 2wjy_A Regulator of nonsense t 84.9 0.48 1.6E-05 56.0 3.6 24 331-354 372-395 (800)
477 2yv5_A YJEQ protein; hydrolase 84.8 0.52 1.8E-05 48.9 3.5 23 331-354 166-188 (302)
478 3qkt_A DNA double-strand break 84.7 0.51 1.8E-05 49.6 3.5 28 327-354 20-47 (339)
479 2il1_A RAB12; G-protein, GDP, 84.6 0.51 1.7E-05 44.5 3.1 21 331-351 27-47 (192)
480 2q3h_A RAS homolog gene family 84.5 0.56 1.9E-05 44.2 3.4 22 331-352 21-42 (201)
481 3hjn_A DTMP kinase, thymidylat 84.5 0.87 3E-05 44.2 4.8 30 333-362 3-35 (197)
482 2fu5_C RAS-related protein RAB 84.5 0.33 1.1E-05 44.8 1.7 22 331-352 9-30 (183)
483 2fv8_A H6, RHO-related GTP-bin 84.4 0.56 1.9E-05 44.7 3.3 23 330-352 25-47 (207)
484 2qag_B Septin-6, protein NEDD5 84.2 0.44 1.5E-05 52.3 2.8 21 333-353 45-65 (427)
485 2o52_A RAS-related protein RAB 84.2 0.52 1.8E-05 44.8 3.0 21 331-351 26-46 (200)
486 4a1f_A DNAB helicase, replicat 84.2 0.86 3E-05 48.4 4.9 33 331-363 47-82 (338)
487 3cbq_A GTP-binding protein REM 84.2 0.45 1.6E-05 45.3 2.6 21 331-351 24-44 (195)
488 3llu_A RAS-related GTP-binding 84.1 0.56 1.9E-05 44.4 3.1 23 330-352 20-42 (196)
489 2rcn_A Probable GTPase ENGC; Y 84.1 0.56 1.9E-05 50.3 3.4 26 329-354 214-239 (358)
490 2cjw_A GTP-binding protein GEM 84.1 0.58 2E-05 44.4 3.2 22 331-352 7-28 (192)
491 4hlc_A DTMP kinase, thymidylat 84.0 0.61 2.1E-05 45.7 3.4 24 332-355 4-27 (205)
492 2f7s_A C25KG, RAS-related prot 83.9 0.59 2E-05 44.7 3.2 22 331-352 26-47 (217)
493 2j1l_A RHO-related GTP-binding 83.9 0.58 2E-05 45.1 3.2 22 331-352 35-56 (214)
494 2hup_A RAS-related protein RAB 83.9 0.61 2.1E-05 44.4 3.3 22 331-352 30-51 (201)
495 2j0v_A RAC-like GTP-binding pr 83.9 0.61 2.1E-05 44.4 3.3 23 331-353 10-32 (212)
496 2x77_A ADP-ribosylation factor 83.9 0.47 1.6E-05 44.3 2.4 21 331-351 23-43 (189)
497 4gzl_A RAS-related C3 botulinu 83.6 0.66 2.3E-05 44.3 3.4 23 331-353 31-53 (204)
498 1yqt_A RNAse L inhibitor; ATP- 83.6 0.58 2E-05 52.7 3.4 24 331-354 48-71 (538)
499 1u0l_A Probable GTPase ENGC; p 83.5 0.48 1.6E-05 49.0 2.6 24 331-354 170-193 (301)
500 2qu8_A Putative nucleolar GTP- 83.5 0.67 2.3E-05 45.1 3.5 22 331-352 30-51 (228)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=100.00 E-value=6.6e-43 Score=375.08 Aligned_cols=344 Identities=58% Similarity=0.961 Sum_probs=277.3
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005663 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGK 343 (684)
..++|+++++.|++.|+||+.+|+.|..++..++++...... ......++.++||+|||||||
T Consensus 2 ~~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-----------------~~~~~~~~~~vll~GppGtGK 64 (363)
T 3hws_A 2 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT-----------------SNGVELGKSNILLIGPTGSGK 64 (363)
T ss_dssp CCCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSC-----------------SSSCCCCCCCEEEECCTTSSH
T ss_pred CCCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccc-----------------cccccCCCCeEEEECCCCCCH
Confidence 357899999999999999999999999999888876543221 111223458999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchH
Q 005663 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 344 T~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e 423 (684)
|++|++||+.++.+|+.++|+.+.+++|+|++.+..+..++..+.+.+..+.++||||||||++...+...+.+.+.+++
T Consensus 65 T~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 144 (363)
T 3hws_A 65 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGE 144 (363)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred HHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchH
Confidence 99999999999999999999999888899998788888999888887888899999999999999887666667777778
Q ss_pred HHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhcccc-CCCCcCcccccccccCCCch
Q 005663 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~-~~lGf~~~v~~~~~~~~~~~ 502 (684)
++|+.||++|||..+.+++.++......+.+.|.++|++||++|++.++++++..+..+ ..+||..+..... .
T Consensus 145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~------~ 218 (363)
T 3hws_A 145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS------D 218 (363)
T ss_dssp HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------------C
T ss_pred HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccc------c
Confidence 89999999999888888777777766667788999999999999999999999998776 7899976644321 1
Q ss_pred hhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHH
Q 005663 503 AVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La 582 (684)
......+.+.+.++++.+++|+|+|++||+.++.|.|++.+++.+|+...++.+.++|.+.+...+..+.++++++++|+
T Consensus 219 ~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~ 298 (363)
T 3hws_A 219 KASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 298 (363)
T ss_dssp CSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred chhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHH
Confidence 23456788889999999999999999999999999999999999999998888899999888888889999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCccc
Q 005663 583 KKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 583 ~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~ 634 (684)
+++|+|++|+|+|+++|++++.++++++++.+ .++.+.||++.|....
T Consensus 299 ~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~----~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 299 KKAMARKTGARGLRSIVEAALLDTMYDLPSME----DVEKVVIDESVIDGQS 346 (363)
T ss_dssp HHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCC----CSEEEECHHHHTTCCS
T ss_pred HhhcCCccCchHHHHHHHHHHHHHHHhccccc----CCceeEEcHHHHhCcC
Confidence 99999999999999999999999999998764 5689999999998765
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=100.00 E-value=9.6e-38 Score=336.19 Aligned_cols=349 Identities=50% Similarity=0.832 Sum_probs=261.3
Q ss_pred CCCCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhh-------hcccccCCCCCCCCCCCCCcccccccceEEE
Q 005663 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNES-------SQKRSAGESSSCTTDGVDDDTVELEKSNILL 335 (684)
Q Consensus 263 ~~~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL 335 (684)
...++++++.+.|++.|+||++||+.|..++.+|+++...+. ..+.+ |. .....+..++.++||
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~--------p~-~~~~~~~~~~~~ill 77 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNV--------EL-EHLEEVELSKSNILL 77 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHH--------HH-HHHHHTTCCCCCEEE
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccc--------cc-ccccccccCCCCEEE
Confidence 456789999999999999999999999999999988866432 00000 00 000011223478999
Q ss_pred EccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccc
Q 005663 336 MGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 336 ~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~ 415 (684)
+||||||||++|+++|+.++.+|+.++|+.+.+.+|+|++.+..+..++....+.+..+.++||||||||++...+....
T Consensus 78 ~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~ 157 (376)
T 1um8_A 78 IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 157 (376)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence 99999999999999999999999999999998888999887778888887777777778899999999999998766655
Q ss_pred cCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccccc
Q 005663 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~ 495 (684)
...+..++++|+.||++||+..+.++..|+......+.+.++++|++||+++++.+|+..+.+|.....+||..+....
T Consensus 158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~- 236 (376)
T 1um8_A 158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSK- 236 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCT-
T ss_pred eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhc-
Confidence 6677788889999999999888888878877777777888999999999999999999999998877888997654321
Q ss_pred ccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCH
Q 005663 496 RAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ite 575 (684)
.....+++.+.+.++.+..|.|+|++|++.++.|++|+.+++.+|+...++.+.++|.+.+...+..+.+++
T Consensus 237 --------~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T 1um8_A 237 --------KEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEE 308 (376)
T ss_dssp --------TTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECH
T ss_pred --------cchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECH
Confidence 012345666777788888999999999999999999999999999998777788888888877788899999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCccc
Q 005663 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~ 634 (684)
+++++|++++|++++|+|+|+++|++++.+++++.+.. ....+.||++++....
T Consensus 309 ~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~-----~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 309 EAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL-----KGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG-----TTSEEEECHHHHTTSS
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC-----CCCEEEEeHHHhcCCC
Confidence 99999999999989999999999999999999988864 2357899999998754
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=1.7e-36 Score=334.97 Aligned_cols=301 Identities=39% Similarity=0.637 Sum_probs=241.7
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005663 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT 344 (684)
.++|+++.+.|+++|+||+++|+.|..++.++|+|...... ...+.++.++||+||||||||
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~------------------~~~~~~~~~iLl~GppGtGKT 64 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEP------------------LRHEVTPKNILMIGPTGVGKT 64 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTT------------------TTTTCCCCCEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccc------------------cccccCCceEEEEcCCCCCHH
Confidence 47899999999999999999999999999999987532110 111234589999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhccc------------------------------------
Q 005663 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD------------------------------------ 388 (684)
Q Consensus 345 ~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~------------------------------------ 388 (684)
++|+++|+.++.+|+.++++.+...+|+|++.+..++.++..+.
T Consensus 65 ~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~ 144 (444)
T 1g41_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWG 144 (444)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------
T ss_pred HHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999998778999866677666654320
Q ss_pred ----------------------------------------ch--------------------------------------
Q 005663 389 ----------------------------------------YN-------------------------------------- 390 (684)
Q Consensus 389 ----------------------------------------~~-------------------------------------- 390 (684)
..
T Consensus 145 ~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~ 224 (444)
T 1g41_A 145 EVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALK 224 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHH
Confidence 00
Q ss_pred --------------------HHhh-cCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCC
Q 005663 391 --------------------VAAA-QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (684)
Q Consensus 391 --------------------v~~a-~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~ 449 (684)
++.+ .+++|++||||++....+ +.++|+++|++|++||++|||..+++
T Consensus 225 ~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~--------- 293 (444)
T 1g41_A 225 ALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST--------- 293 (444)
T ss_dssp -CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE---------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc---------
Confidence 1123 678999999999987533 35789999999999999999887763
Q ss_pred CCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhc
Q 005663 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVG 529 (684)
Q Consensus 450 ~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~ 529 (684)
....+|++|++|||||+|.. ..+.| ++|||++
T Consensus 294 --~~~~~d~~~ilfI~~gaf~~-----------------------------------------~~~~d-----lipel~~ 325 (444)
T 1g41_A 294 --KHGMVKTDHILFIASGAFQV-----------------------------------------ARPSD-----LIPELQG 325 (444)
T ss_dssp --TTEEEECTTCEEEEEECCSS-----------------------------------------CCGGG-----SCHHHHT
T ss_pred --ccceecCCcEEEEecccccc-----------------------------------------CChhh-----cchHHhc
Confidence 12589999999999998741 01122 6799999
Q ss_pred ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcC-----CCCCChHHHHHHHHHHHH
Q 005663 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI-----SKNTGARGLRSLLENILM 604 (684)
Q Consensus 530 R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~-----~~~~GAR~Lr~iIe~~l~ 604 (684)
||+++|.|++|+++|+.+|++++.+.+.+||.+.+...++++.|+++|+++|++.++ +.+.|||.|+++|++++.
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999765 489999999999999999
Q ss_pred HHHhcCCCCcCCCCcccEEEechhccCcccCCCcceEEcCCChHHHHH
Q 005663 605 DAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDRYL 652 (684)
Q Consensus 605 ~al~e~~~~~~g~~~i~~v~vdee~v~~~~~~~~~~i~~~~g~l~~~l 652 (684)
+.++++++.+ ...+.||.+.|...... ...+.+|.+|+
T Consensus 406 ~~~~~~~~~~-----~~~~~i~~~~v~~~l~~-----~~~~~dl~~~~ 443 (444)
T 1g41_A 406 KISFSASDMN-----GQTVNIDAAYVADALGE-----VVENEDLSRFI 443 (444)
T ss_dssp HHHHHGGGCT-----TCEEEECHHHHHHHHTT-----TTTCHHHHHHH
T ss_pred HHHhhccccC-----CCeEEEeHHHHHHhcCc-----cccCCChhccc
Confidence 9999999753 36789999887753311 12455666664
No 4
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.95 E-value=3.5e-27 Score=243.99 Aligned_cols=287 Identities=39% Similarity=0.665 Sum_probs=217.7
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005663 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT 344 (684)
..+|+++.+.|++.|+||+++++.+..++..++.+.......+ ....+.++||+||||||||
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~------------------~~~~~~~vll~G~~GtGKT 64 (310)
T 1ofh_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR------------------HEVTPKNILMIGPTGVGKT 64 (310)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH------------------HHCCCCCEEEECCTTSSHH
T ss_pred cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhccccc------------------ccCCCceEEEECCCCCCHH
Confidence 3678999999999999999999999999976554321110000 0012379999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhh-cCCEEEEccccccchhhcccccCCCCchH
Q 005663 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA-QQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 345 ~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a-~~gVLfIDEIdkl~~~r~~~~~~~d~~~e 423 (684)
++|+++|+.++.+++.++|+.+...+|+|.+.+..+..++...++.+..+ .++||||||||++..... +.+.+..++
T Consensus 65 ~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~~~~~~~~~ 142 (310)
T 1ofh_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSRE 142 (310)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS--CCSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc--ccccchhHH
Confidence 99999999999999999999998778999877778888887665555543 579999999999987643 123455556
Q ss_pred HHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005663 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~ 503 (684)
++|+.|+++||+..+.. ..+ .++..+++||+++++..
T Consensus 143 ~~~~~Ll~~le~~~~~~--------~~~---~~~~~~~~~i~~~~~~~-------------------------------- 179 (310)
T 1ofh_A 143 GVQRDLLPLVEGSTVST--------KHG---MVKTDHILFIASGAFQV-------------------------------- 179 (310)
T ss_dssp HHHHHHHHHHHCCEEEE--------TTE---EEECTTCEEEEEECCSS--------------------------------
T ss_pred HHHHHHHHHhcCCeEec--------ccc---cccCCcEEEEEcCCccc--------------------------------
Confidence 67999999999654431 111 35677888998875310
Q ss_pred hhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHH
Q 005663 504 VVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~ 583 (684)
.. ...+.|+|++||+.++.|++++.+++.+|+.+.++.+.+++...+...+..+.++++++++|++
T Consensus 180 ---------~~-----~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 245 (310)
T 1ofh_A 180 ---------AR-----PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 245 (310)
T ss_dssp ---------SC-----GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHH
T ss_pred ---------CC-----cccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHH
Confidence 00 0136799999999889999999999999999766667777777777777788999999999999
Q ss_pred hcCC-----CCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCcc
Q 005663 584 KAIS-----KNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 584 ~a~~-----~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~ 633 (684)
++|. ..+++|.|++++++++..+..+...... ..+.|+.+++...
T Consensus 246 ~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~-----~~~~i~~~~v~~~ 295 (310)
T 1ofh_A 246 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNG-----QTVNIDAAYVADA 295 (310)
T ss_dssp HHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTT-----CEEEECHHHHHHH
T ss_pred HhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccC-----CEEEEeeHHHHHH
Confidence 8765 3688999999999999887766554321 3456777766543
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.95 E-value=6.7e-27 Score=273.58 Aligned_cols=273 Identities=21% Similarity=0.307 Sum_probs=199.1
Q ss_pred CCCCCCCCCCCCC----hHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCccccccc
Q 005663 255 CWGGSNLGNKFPT----PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (684)
Q Consensus 255 ~~~g~~~~~~~~~----~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (684)
.|+++|....... ...+++.|.+.|+||+++++.+..++... ..+..++.+ |.
T Consensus 432 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~------------~~g~~~~~~-----------p~ 488 (758)
T 1r6b_X 432 RIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA------------RAGLGHEHK-----------PV 488 (758)
T ss_dssp HHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH------------HTTCSCTTS-----------CS
T ss_pred HhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH------------hcccCCCCC-----------Cc
Confidence 4566665543333 34478889999999999999999888511 223333222 23
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-----------CCccccchHHHHHHHHhcccchHHhhcCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVL 399 (684)
.++||+||||||||++|+++|+.++.+|+.+||+++.+ ++|+|++....+...+.. +.++||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-------~~~~vl 561 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-------HPHAVL 561 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH-------CSSEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh-------CCCcEE
Confidence 68999999999999999999999999999999998854 457887655555555544 346899
Q ss_pred EEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhc
Q 005663 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (684)
Q Consensus 400 fIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r 479 (684)
|||||+++++. +++.|+++||+..+ ++..+ ..++++|++||+|+|... +.++
T Consensus 562 ~lDEi~~~~~~--------------~~~~Ll~~le~~~~--------~~~~g--~~~~~~~~~iI~tsN~~~-~~~~--- 613 (758)
T 1r6b_X 562 LLDEIEKAHPD--------------VFNILLQVMDNGTL--------TDNNG--RKADFRNVVLVMTTNAGV-RETE--- 613 (758)
T ss_dssp EEETGGGSCHH--------------HHHHHHHHHHHSEE--------EETTT--EEEECTTEEEEEEECSSC-C------
T ss_pred EEeCccccCHH--------------HHHHHHHHhcCcEE--------EcCCC--CEEecCCeEEEEecCcch-hhhh---
Confidence 99999999887 99999999994333 22233 478999999999988532 1111
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHH
Q 005663 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (684)
Q Consensus 480 ~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kq 559 (684)
+..+||...... . ...+.++..|.|+|++||+.+|.|++++.+++.+|+...+..+.+
T Consensus 614 --~~~~g~~~~~~~-------------~------~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~- 671 (758)
T 1r6b_X 614 --RKSIGLIHQDNS-------------T------DAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV- 671 (758)
T ss_dssp -----------------------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHH-
T ss_pred --hcccCccccchH-------------H------HHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHH-
Confidence 123555422100 0 112234457899999999999999999999999999986655544
Q ss_pred HHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcC
Q 005663 560 YRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 560 y~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
.+...++.+.++++++++|++++|+.++|+|+|+++|++++.+++.+.
T Consensus 672 ---~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~ 719 (758)
T 1r6b_X 672 ---QLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_dssp ---HHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred ---HHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 445567788999999999999999999999999999999999877653
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.94 E-value=6.9e-26 Score=235.40 Aligned_cols=260 Identities=24% Similarity=0.357 Sum_probs=185.1
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005663 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAk 348 (684)
.++++.|.+.++||+.+++.+...+..... +...+.+ +..++||+||||||||++|+
T Consensus 9 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~------------~~~~~~~-----------~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 9 LRLEEELHKRVVGQDEAIRAVADAIRRARA------------GLKDPNR-----------PIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp HTHHHHHHTTCCSCHHHHHHHHHHHHHHHH------------TCSCTTS-----------CSEEEEEESCSSSSHHHHHH
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhc------------CCCCCCC-----------CceEEEEECCCCcCHHHHHH
Confidence 457888999999999999999998862211 1112212 23689999999999999999
Q ss_pred HHHHHh---CCCEEEEecccccc-----------CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 349 TLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 349 aLA~~l---~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++|+.+ +.+++.++|+.+.. .+++|......+...+.. +.++||||||||++.+.
T Consensus 66 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~vl~lDEi~~l~~~---- 134 (311)
T 4fcw_A 66 TLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-------RPYSVILFDAIEKAHPD---- 134 (311)
T ss_dssp HHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH-------CSSEEEEEETGGGSCHH----
T ss_pred HHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh-------CCCeEEEEeChhhcCHH----
Confidence 999998 56799999988753 223343322333333332 34589999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
+|+.|+++|++..+. +..+ ..++++++++|+|+|... +.+.... ..
T Consensus 135 ----------~~~~Ll~~le~~~~~--------~~~~--~~~~~~~~iiI~ttn~~~-~~i~~~~-~~------------ 180 (311)
T 4fcw_A 135 ----------VFNILLQMLDDGRLT--------DSHG--RTVDFRNTVIIMTSNLGS-PLILEGL-QK------------ 180 (311)
T ss_dssp ----------HHHHHHHHHHHSEEE--------CTTS--CEEECTTEEEEEEESTTH-HHHHTTT-TS------------
T ss_pred ----------HHHHHHHHHhcCEEE--------cCCC--CEEECCCcEEEEecccCH-HHHHhhh-cc------------
Confidence 999999999944432 2222 378899999999988521 1111100 00
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
....+ .+.+.++ +.+...|.|+|++||+.++.|.|++.+++.+|+...+..+.++ +...+..+.++
T Consensus 181 ----~~~~~----~l~~~~~--~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~----~~~~~~~~~~~ 246 (311)
T 4fcw_A 181 ----GWPYE----RIRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRAR----LAEKRISLELT 246 (311)
T ss_dssp ----CCCSS----THHHHTH--HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHH----HHTTTCEEEEC
T ss_pred ----cccHH----HHHHHHH--HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHH----HHhCCcEEEeC
Confidence 00000 1111111 1234568999999999999999999999999999866655444 44456689999
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcC
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
++++++|++++|++++|+|+|+++|++++..++.+.
T Consensus 247 ~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 247 EAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp HHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 999999999988889999999999999999877654
No 7
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.94 E-value=3.1e-26 Score=268.34 Aligned_cols=258 Identities=21% Similarity=0.335 Sum_probs=182.9
Q ss_pred CCCCCCCCCCC----CChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCccccccc
Q 005663 255 CWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (684)
Q Consensus 255 ~~~g~~~~~~~----~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (684)
.|+++|..... .....+...|.+.|+||+.+++.+..++... ..+...+.+| .
T Consensus 465 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~------------~~~~~~~~~p-----------~ 521 (758)
T 3pxi_A 465 SWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA------------RAGLKDPKRP-----------I 521 (758)
T ss_dssp TTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH------------TTTCSCTTSC-----------S
T ss_pred HHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH------------HcccCCCCCC-----------c
Confidence 56666654422 2233477888899999999999999988511 2222222222 3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
.++||+||||||||++|+++|+.+ +.+|+.+||+++.+. +... ...+...+.. ..++|||||||+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~~~-------~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKVRR-------KPYSVVLLDAIEKA 591 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHHHH-------CSSSEEEEECGGGS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhHHHHh-------CCCeEEEEeCcccc
Confidence 589999999999999999999998 678999999998743 2222 2233333332 35689999999999
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
++. +|+.||++||++.+ ++..++ .+++.|+++|+|+|...
T Consensus 592 ~~~--------------~~~~Ll~~le~g~~--------~~~~g~--~~~~~~~~iI~ttn~~~---------------- 631 (758)
T 3pxi_A 592 HPD--------------VFNILLQVLEDGRL--------TDSKGR--TVDFRNTILIMTSNVGA---------------- 631 (758)
T ss_dssp CHH--------------HHHHHHHHHHHSBC--------C-------CCBCTTCEEEEEESSST----------------
T ss_pred CHH--------------HHHHHHHHhccCeE--------EcCCCC--EeccCCeEEEEeCCCCh----------------
Confidence 887 99999999994333 222232 56888999999987421
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhC
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~ 567 (684)
.. ...+ .+.++..|+|+|++||+.+|.|++|+.+++.+|+...+..+.++ +...
T Consensus 632 ~~----------------~~~~------~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~----~~~~ 685 (758)
T 3pxi_A 632 SE----------------KDKV------MGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKR----LKEQ 685 (758)
T ss_dssp TC----------------CHHH------HHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHH----HHTT
T ss_pred hh----------------HHHH------HHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHH----HHhC
Confidence 00 0000 12234468999999999999999999999999999866655444 4445
Q ss_pred CceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005663 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 568 gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+..+.++++++++|++.+|+|++|+|+|+++|++.+...+.+..
T Consensus 686 ~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 686 DLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp TCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred CCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999887653
No 8
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.93 E-value=9.4e-26 Score=267.79 Aligned_cols=275 Identities=24% Similarity=0.359 Sum_probs=191.6
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005663 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~~~~~~~~~~~----~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (684)
..|+++|..+...... .+.+.|.+.|+||+.+++.+..++. + .+++..++.+|
T Consensus 531 ~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~----~--------~~~g~~~~~~p----------- 587 (854)
T 1qvr_A 531 SRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIR----R--------ARAGLKDPNRP----------- 587 (854)
T ss_dssp HTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHH----H--------HGGGCSCSSSC-----------
T ss_pred HHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHH----H--------HhcccCCCCCC-----------
Confidence 3566665544333322 2566777789999999999999885 1 12223333222
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc-----------CCccccchHHHHHHHHhcccchHHhhc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~-----------sgyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
..++||+||||||||++|++|++.+ +.+|+.++|+++.+ ++|+|++....+...+.. ..
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-------~~ 660 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-------RP 660 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH-------CS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh-------CC
Confidence 3699999999999999999999999 78999999998753 346676643444444443 34
Q ss_pred CCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHH
Q 005663 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~ 475 (684)
++|||||||+++++. +|+.|+++||... .++..+ ..+|++|+++|+|+|... +.+
T Consensus 661 ~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~--------~~~~~g--~~vd~~~~iiI~tsn~~~-~~~ 715 (854)
T 1qvr_A 661 YSVILFDEIEKAHPD--------------VFNILLQILDDGR--------LTDSHG--RTVDFRNTVIILTSNLGS-PLI 715 (854)
T ss_dssp SEEEEESSGGGSCHH--------------HHHHHHHHHTTTE--------ECCSSS--CCEECTTEEEEEECCTTH-HHH
T ss_pred CeEEEEecccccCHH--------------HHHHHHHHhccCc--------eECCCC--CEeccCCeEEEEecCcCh-HHH
Confidence 589999999999887 9999999999433 233333 378999999999988521 111
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH
Q 005663 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
.... +++ ..+.. +.+.+. +..+..|+|+|++||+.++.|.|++.+++..|+...+..
T Consensus 716 ~~~~------~~~-----------~~~~~----l~~~v~--~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 716 LEGL------QKG-----------WPYER----IRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp HHHH------HTT-----------CCHHH----HHHHHH--HHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred hhhc------ccc-----------cchHH----HHHHHH--HHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 1100 000 00111 111110 123567999999999999999999999999999986665
Q ss_pred HHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcC
Q 005663 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 556 L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
+.++ +...++.+.++++++++|++++|++++|+|+|+++|++.+..++.+.
T Consensus 773 ~~~~----~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 773 LRAR----LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp HHHH----HHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred HHHH----HHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 5444 44456688999999999999999999999999999999999887654
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.5e-23 Score=224.31 Aligned_cols=221 Identities=22% Similarity=0.312 Sum_probs=169.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|.|++++|+.|.++|..+.++.....+ .+. .+|.++||+||||||||++|+++|..++.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~----~gi---------------~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFES----LGI---------------AQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHH----HTC---------------CCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHh----CCC---------------CCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 3799999999999999865554322111 011 124899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|++ +..++.+|..+. ...++||||||||.+...|...+.+.+....++...||..|||..
T Consensus 210 f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar----~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 210 FIRVSGAELV-QKYIGEG-SRMVRELFVMAR----EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp EEEEEGGGGS-CSSTTHH-HHHHHHHHHHHH----HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ceEEEhHHhh-ccccchH-HHHHHHHHHHHH----HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 9999999998 7899998 788999998765 357899999999999988766555555555668889999998521
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+|+|..+
T Consensus 284 -------------------~~~~V~vIaATNrpd---------------------------------------------- 298 (405)
T 4b4t_J 284 -------------------TSKNIKIIMATNRLD---------------------------------------------- 298 (405)
T ss_dssp -------------------CCCCEEEEEEESCSS----------------------------------------------
T ss_pred -------------------CCCCeEEEeccCChh----------------------------------------------
Confidence 224578888877432
Q ss_pred HHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHH-HHHHHHHhcCCCCCChHH
Q 005663 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 li~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~itee-Al~~La~~a~~~~~GAR~ 594 (684)
.+.|+|+. |||..|.++.++.++..+|++..+ + .+.++++ .++.|++. ..++.+++
T Consensus 299 ----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~-----------~----~~~l~~dvdl~~lA~~--t~G~SGAD 357 (405)
T 4b4t_J 299 ----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS-----------R----KMNLTRGINLRKVAEK--MNGCSGAD 357 (405)
T ss_dssp ----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-----------T----TSBCCSSCCHHHHHHH--CCSCCHHH
T ss_pred ----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh-----------c----CCCCCccCCHHHHHHH--CCCCCHHH
Confidence 25577775 999999999999999999986521 1 1122222 26778885 56777899
Q ss_pred HHHHHHHHHHHHHhc
Q 005663 595 LRSLLENILMDAMYE 609 (684)
Q Consensus 595 Lr~iIe~~l~~al~e 609 (684)
|++++..+...++.+
T Consensus 358 i~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 358 VKGVCTEAGMYALRE 372 (405)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999988877654
No 10
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-22 Score=222.43 Aligned_cols=219 Identities=21% Similarity=0.294 Sum_probs=167.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhH--hhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRI--YNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.|.|++++|+.|.+.|..+.++. +..... .++.++||+||||||||++|+++|..++
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---------------------~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGI---------------------KPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---------------------CCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---------------------CCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 37999999999999998654432 221111 1248999999999999999999999999
Q ss_pred CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhc
Q 005663 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++++++. ..|+|++ +..++.+|..+. ...++||||||||.+...|...+.+.+.....+...||..|||
T Consensus 242 ~~fi~v~~s~l~-sk~vGes-ek~ir~lF~~Ar----~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 242 ATFLRIVGSELI-QKYLGDG-PRLCRQIFKVAG----ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp CEEEEEESGGGC-CSSSSHH-HHHHHHHHHHHH----HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEHHHhh-hccCchH-HHHHHHHHHHHH----hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 999999999998 7899998 788999998764 3578999999999999988765555555555677888888884
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKS 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.. ...++++|+|+|..+
T Consensus 316 ~~-------------------~~~~ViVIaATNrpd-------------------------------------------- 332 (437)
T 4b4t_I 316 FD-------------------DRGDVKVIMATNKIE-------------------------------------------- 332 (437)
T ss_dssp CC-------------------CSSSEEEEEEESCST--------------------------------------------
T ss_pred cC-------------------CCCCEEEEEeCCChh--------------------------------------------
Confidence 21 234578888887432
Q ss_pred hhHHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHH-HHHHHHHhcCCCCCCh
Q 005663 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGA 592 (684)
Q Consensus 516 ~dli~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~itee-Al~~La~~a~~~~~GA 592 (684)
.+.|+|+. |||..|.|+.++.++..+|++..+ . .+.++++ .++.|++. +.++..
T Consensus 333 ------~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l-----------~----~~~l~~dvdl~~LA~~--T~GfSG 389 (437)
T 4b4t_I 333 ------TLDPALIRPGRIDRKILFENPDLSTKKKILGIHT-----------S----KMNLSEDVNLETLVTT--KDDLSG 389 (437)
T ss_dssp ------TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH-----------T----TSCBCSCCCHHHHHHH--CCSCCH
T ss_pred ------hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh-----------c----CCCCCCcCCHHHHHHh--CCCCCH
Confidence 25677875 999999999999999999987532 1 1122222 26778874 567778
Q ss_pred HHHHHHHHHHHHHHHhc
Q 005663 593 RGLRSLLENILMDAMYE 609 (684)
Q Consensus 593 R~Lr~iIe~~l~~al~e 609 (684)
++|++++..+...++.+
T Consensus 390 ADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 390 ADIQAMCTEAGLLALRE 406 (437)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999988887754
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-22 Score=222.15 Aligned_cols=222 Identities=22% Similarity=0.273 Sum_probs=165.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|.|++++|+.|.+.|..+.++...... .+. .+|.++|||||||||||++|+++|..++.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~----~g~---------------~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKD----MGI---------------RAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHH----HCC---------------CCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHh----CCC---------------CCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 3799999999999998765553221111 011 124899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|++ ++.++.+|..+. ...++||||||||.+...|...+.+.+.....+...||..|||..
T Consensus 243 f~~v~~s~l~-~~~vGes-e~~ir~lF~~A~----~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 243 FLKLAAPQLV-QMYIGEG-AKLVRDAFALAK----EKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp EEEEEGGGGC-SSCSSHH-HHHHHHHHHHHH----HHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred EEEEehhhhh-hcccchH-HHHHHHHHHHHH----hcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 9999999998 7899998 788999998764 357899999999999988765444444444456778888888521
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+|+|..+
T Consensus 317 -------------------~~~~ViVIaaTNrp~---------------------------------------------- 331 (434)
T 4b4t_M 317 -------------------SDDRVKVLAATNRVD---------------------------------------------- 331 (434)
T ss_dssp -------------------SSCSSEEEEECSSCC----------------------------------------------
T ss_pred -------------------CCCCEEEEEeCCCch----------------------------------------------
Confidence 123477888877432
Q ss_pred HHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHH
Q 005663 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 li~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~L 595 (684)
.+.|+|+. |||..|.|+.++.++..+|++..+.. + ...-.++ ++.|++. +.++.+++|
T Consensus 332 ----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--------~---~~~~dvd---l~~lA~~--t~G~sGADi 391 (434)
T 4b4t_M 332 ----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK--------M---TTDDDIN---WQELARS--TDEFNGAQL 391 (434)
T ss_dssp ----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH--------S---CBCSCCC---HHHHHHH--CSSCCHHHH
T ss_pred ----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC--------C---CCCCcCC---HHHHHHh--CCCCCHHHH
Confidence 35678865 99999999999999999999753211 1 1111122 6777874 566778999
Q ss_pred HHHHHHHHHHHHhc
Q 005663 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
++++..+...++.+
T Consensus 392 ~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 392 KAVTVEAGMIALRN 405 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999988877654
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-21 Score=216.41 Aligned_cols=221 Identities=21% Similarity=0.270 Sum_probs=166.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|.|++++|+.|.+.|..+.++...... .+. .++.++||+||||||||++|+++|..++.+|
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~----~g~---------------~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQR----VGI---------------KPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHH----HCC---------------CCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHh----CCC---------------CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 799999999999999865554322111 010 1358999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|+|++ +..++.+|..+. ...++||||||||.+...|...+.+.+.....+...||..|||..
T Consensus 244 ~~v~~s~l~-sk~~Ges-e~~ir~~F~~A~----~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~- 316 (437)
T 4b4t_L 244 IFSPASGIV-DKYIGES-ARIIREMFAYAK----EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD- 316 (437)
T ss_dssp EEEEGGGTC-CSSSSHH-HHHHHHHHHHHH----HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-
T ss_pred EEEehhhhc-cccchHH-HHHHHHHHHHHH----hcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-
Confidence 999999998 7899998 788899988764 357899999999999988766554555445567888999999521
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+|+|..+
T Consensus 317 ------------------~~~~vivI~ATNrp~----------------------------------------------- 331 (437)
T 4b4t_L 317 ------------------NLGQTKIIMATNRPD----------------------------------------------- 331 (437)
T ss_dssp ------------------CTTSSEEEEEESSTT-----------------------------------------------
T ss_pred ------------------CCCCeEEEEecCCch-----------------------------------------------
Confidence 123577788877432
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|+|+ +|||..|.|+.++.++..+|++..+.. ....-.+ .++.|++ .+.++.+++|+
T Consensus 332 ---~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----------~~~~~d~---dl~~lA~--~t~G~sGADi~ 392 (437)
T 4b4t_L 332 ---TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK-----------VKKTGEF---DFEAAVK--MSDGFNGADIR 392 (437)
T ss_dssp ---SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-----------SCBCSCC---CHHHHHH--TCCSCCHHHHH
T ss_pred ---hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-----------CCCCccc---CHHHHHH--hCCCCCHHHHH
Confidence 2457775 579999999999999999998753211 1111112 2677787 46777889999
Q ss_pred HHHHHHHHHHHhc
Q 005663 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
+++..+...++.+
T Consensus 393 ~l~~eA~~~air~ 405 (437)
T 4b4t_L 393 NCATEAGFFAIRD 405 (437)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999888877654
No 13
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.3e-22 Score=217.06 Aligned_cols=221 Identities=19% Similarity=0.283 Sum_probs=166.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|.|++++|+.|.+.+..+.++...... .|. .++.++||+||||||||++|+++|..++.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~----~g~---------------~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQ----IGI---------------DPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHH----HCC---------------CCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHh----CCC---------------CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4899999999999999755543221111 011 124899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|+. +..++.+|..+. ...++||||||||.+...|...+.+.+....++.+.||..|||..
T Consensus 234 ~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A~----~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 234 FIRVNGSEFV-HKYLGEG-PRMVRDVFRLAR----ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp EEEEEGGGTC-CSSCSHH-HHHHHHHHHHHH----HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred eEEEecchhh-ccccchh-HHHHHHHHHHHH----HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 9999999998 7899998 788999998764 357899999999999988766555555555678899999999521
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+|+|..+
T Consensus 308 -------------------~~~~v~vI~aTN~~~---------------------------------------------- 322 (428)
T 4b4t_K 308 -------------------QSTNVKVIMATNRAD---------------------------------------------- 322 (428)
T ss_dssp -------------------SSCSEEEEEEESCSS----------------------------------------------
T ss_pred -------------------CCCCEEEEEecCChh----------------------------------------------
Confidence 234578888887432
Q ss_pred HHhcCCChhhhc--ccceEEEec-ccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHH-HHHHHHHhcCCCCCChH
Q 005663 518 LIAYGLIPEFVG--RFPVLVSLL-ALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGAR 593 (684)
Q Consensus 518 li~~~f~PeLl~--R~d~iI~f~-pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~itee-Al~~La~~a~~~~~GAR 593 (684)
.+.|+|+. |||..|.|+ .++.++...|+...+. .+.++++ .++.|++. +.++.++
T Consensus 323 ----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~---------------~~~l~~~~dl~~lA~~--t~G~sga 381 (428)
T 4b4t_K 323 ----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS---------------KMSLAPEADLDSLIIR--NDSLSGA 381 (428)
T ss_dssp ----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH---------------SSCBCTTCCHHHHHHH--TTTCCHH
T ss_pred ----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc---------------CCCCCcccCHHHHHHH--CCCCCHH
Confidence 25577764 999999996 5788888888865211 1222222 26778875 5677789
Q ss_pred HHHHHHHHHHHHHHhc
Q 005663 594 GLRSLLENILMDAMYE 609 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e 609 (684)
+|++++..+...++.+
T Consensus 382 di~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 382 VIAAIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC
Confidence 9999999988877754
No 14
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-21 Score=216.52 Aligned_cols=222 Identities=21% Similarity=0.231 Sum_probs=165.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|.|++++|+.|.+.|..+.++.....+ .+. .++.++||+||||||||++|+++|..++.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~----~Gi---------------~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFAT----LGI---------------DPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHH----HTC---------------CCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHH----CCC---------------CCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 4899999999999998754443221111 011 135899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|++ ++.++.+|..+. ...++||||||||.+...|...+.+.+.....+...||..|||..
T Consensus 271 fi~vs~s~L~-sk~vGes-ek~ir~lF~~Ar----~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 271 FIRVIGSELV-QKYVGEG-ARMVRELFEMAR----TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp EEEEEGGGGC-CCSSSHH-HHHHHHHHHHHH----HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred eEEEEhHHhh-cccCCHH-HHHHHHHHHHHH----hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 9999999998 7899998 788999998764 357899999999999988765544444444557778888888421
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+|+|..+
T Consensus 345 -------------------~~~~ViVIaATNrpd---------------------------------------------- 359 (467)
T 4b4t_H 345 -------------------PRGNIKVMFATNRPN---------------------------------------------- 359 (467)
T ss_dssp -------------------CTTTEEEEEECSCTT----------------------------------------------
T ss_pred -------------------CCCcEEEEeCCCCcc----------------------------------------------
Confidence 234578888887432
Q ss_pred HHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHH
Q 005663 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 li~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~L 595 (684)
.+.|+|+. |||..|.|+.++.++..+|++..+ +.....-.++ ++.|++. +.++.+++|
T Consensus 360 ----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l-----------~~~~l~~dvd---l~~LA~~--T~GfSGADI 419 (467)
T 4b4t_H 360 ----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS-----------KSMSVERGIR---WELISRL--CPNSTGAEL 419 (467)
T ss_dssp ----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH-----------TTSCBCSSCC---HHHHHHH--CCSCCHHHH
T ss_pred ----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHh-----------cCCCCCCCCC---HHHHHHH--CCCCCHHHH
Confidence 24577764 999999999999999999987521 1111111122 5677874 567778999
Q ss_pred HHHHHHHHHHHHhc
Q 005663 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
++++..+...++.+
T Consensus 420 ~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 420 RSVCTEAGMFAIRA 433 (467)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888877654
No 15
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=2.9e-21 Score=200.61 Aligned_cols=236 Identities=18% Similarity=0.270 Sum_probs=168.1
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005663 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~ 345 (684)
....++.+.|++.|+|++.+|+.|...+...... ... ...+.... .+..++||+||||||||+
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~---~~~--~~~g~~~~------------~~~~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVE---RAR--QKLGLAHE------------TPTLHMSFTGNPGTGKTT 82 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH---HHH--HHHTCCSS------------CCCCEEEEEECTTSSHHH
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhH---HHH--HHcCCCCC------------CCCceEEEECCCCCCHHH
Confidence 4456788889888999999999999888632211 000 01111111 123789999999999999
Q ss_pred HHHHHHHHh-------CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCC
Q 005663 346 LAKTLARYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 346 LAkaLA~~l-------~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~ 418 (684)
+|+++|+.+ ..+++.++++++. ..++|.. ...+..++.. +.++||||||||.+...+..
T Consensus 83 la~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~----- 148 (309)
T 3syl_A 83 VALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEVLKR-------AMGGVLFIDEAYYLYRPDNE----- 148 (309)
T ss_dssp HHHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH-HHHHHHHHHH-------HTTSEEEEETGGGSCCCC-------
T ss_pred HHHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc-HHHHHHHHHh-------cCCCEEEEEChhhhccCCCc-----
Confidence 999999988 3489999999887 5688876 4445555543 35689999999999754221
Q ss_pred CCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccC
Q 005663 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~ 498 (684)
+.....+++.|+++|+.. ..++++|++++...++...
T Consensus 149 ~~~~~~~~~~Ll~~l~~~---------------------~~~~~~i~~~~~~~~~~~~---------------------- 185 (309)
T 3syl_A 149 RDYGQEAIEILLQVMENN---------------------RDDLVVILAGYADRMENFF---------------------- 185 (309)
T ss_dssp -CCTHHHHHHHHHHHHHC---------------------TTTCEEEEEECHHHHHHHH----------------------
T ss_pred ccccHHHHHHHHHHHhcC---------------------CCCEEEEEeCChHHHHHHH----------------------
Confidence 223345999999999821 1346777777632211110
Q ss_pred CCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHH
Q 005663 499 GVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 499 ~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl 578 (684)
.+.|+|++|++.++.|++++.+++.+|+...+.. . .+.++++++
T Consensus 186 -----------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~-----------~--~~~~~~~~~ 229 (309)
T 3syl_A 186 -----------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD-----------Q--NYQMTPEAE 229 (309)
T ss_dssp -----------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH-----------T--TCEECHHHH
T ss_pred -----------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH-----------c--CCCCCHHHH
Confidence 1348999999999999999999999999864322 1 467999999
Q ss_pred HHHHHhcC-----CCCCChHHHHHHHHHHHHHHHhcCC
Q 005663 579 RLIAKKAI-----SKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 579 ~~La~~a~-----~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.++++.- .|.+++|.|++++++++..+...+.
T Consensus 230 ~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 230 TALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99998632 6667799999999999987665543
No 16
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.86 E-value=1.8e-21 Score=220.44 Aligned_cols=244 Identities=20% Similarity=0.251 Sum_probs=165.0
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005663 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~ 345 (684)
....++.+.|++.++|++++++.+...+...... ...+..++||+||||||||+
T Consensus 70 ~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~--------------------------~~~~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 70 LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLT--------------------------KSLKGPILCLAGPPGVGKTS 123 (543)
T ss_dssp CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHS--------------------------SSCCSCEEEEESSSSSSHHH
T ss_pred ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc--------------------------ccCCCCEEEEECCCCCCHHH
Confidence 3345566778888999999999997766411110 01124789999999999999
Q ss_pred HHHHHHHHhCCCEEEEecccccc--------CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccC
Q 005663 346 LAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 346 LAkaLA~~l~~pfv~v~~s~l~~--------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~ 417 (684)
+|+++|+.++.++..+++..+.. ..|+|+. .+.+...+..+. ..++||||||||++...+..
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~~---- 193 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFRG---- 193 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC---------------------CHHHHHHTTC-----SSSEEEEEEESSSCC---------
T ss_pred HHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhcc----
Confidence 99999999999999999987643 2455554 233333444332 24569999999999876321
Q ss_pred CCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccccccc
Q 005663 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~ 497 (684)
.++++||++||+... ......+....++..+++||+|+|..+
T Consensus 194 ------~~~~~LL~~ld~~~~------~~~~~~~~~~~~~~~~v~iI~ttN~~~-------------------------- 235 (543)
T 3m6a_A 194 ------DPSSAMLEVLDPEQN------SSFSDHYIEETFDLSKVLFIATANNLA-------------------------- 235 (543)
T ss_dssp ----------CCGGGTCTTTT------TBCCCSSSCCCCBCSSCEEEEECSSTT--------------------------
T ss_pred ------CHHHHHHHHHhhhhc------ceeecccCCeeecccceEEEeccCccc--------------------------
Confidence 178999999983221 111122223456778999999987321
Q ss_pred CCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHH
Q 005663 498 GGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA 577 (684)
Q Consensus 498 ~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA 577 (684)
.++|+|++|++ ++.|++++.+++.+|+...+ ..++.+........+.+++++
T Consensus 236 ------------------------~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l---~~~~~~~~~~~~~~i~i~~~~ 287 (543)
T 3m6a_A 236 ------------------------TIPGPLRDRME-IINIAGYTEIEKLEIVKDHL---LPKQIKEHGLKKSNLQLRDQA 287 (543)
T ss_dssp ------------------------TSCHHHHHHEE-EEECCCCCHHHHHHHHHHTH---HHHHHHHTTCCGGGCEECHHH
T ss_pred ------------------------cCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHH---HHHHHHHcCCCcccccCCHHH
Confidence 36799999996 78999999999999998753 333333333333367899999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005663 578 LRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 578 l~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+..|++. |+|..|+|+|++.|++++..+...+..
T Consensus 288 l~~l~~~-~~~~~~vR~L~~~i~~~~~~aa~~~~~ 321 (543)
T 3m6a_A 288 ILDIIRY-YTREAGVRSLERQLAAICRKAAKAIVA 321 (543)
T ss_dssp HHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-CChhhchhHHHHHHHHHHHHHHHHHHh
Confidence 9999984 889999999999999999887766543
No 17
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.86 E-value=8.6e-22 Score=207.46 Aligned_cols=272 Identities=17% Similarity=0.245 Sum_probs=174.7
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005663 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-- 354 (684)
+.++|++.+++.+...+. + .+. ...++||+||||||||++|+++++.+
T Consensus 2 ~~iig~s~~~~~~~~~~~----~----------~a~----------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIA----M----------VAP----------------SDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp -CCCCCSHHHHHHHHHHH----H----------HCS----------------TTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCcEECCHHHHHHHHHHH----H----------HhC----------------CCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 347999999999888875 1 111 12789999999999999999999976
Q ss_pred -CCCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHH
Q 005663 355 -NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 355 -~~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+.||+.++|+.+.+ +.++|+..+. +........+.++.+.+++||||||+.++.. +|..|
T Consensus 52 ~~~~~v~v~~~~~~~~l~~~~lfg~~~g~-~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~L 116 (304)
T 1ojl_A 52 SDRPLVTLNCAALNESLLESELFGHEKGA-FTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRL 116 (304)
T ss_dssp SSSCCCEEECSSCCHHHHHHHHTCCCSSC-CC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHH
T ss_pred cCCCeEEEeCCCCChHHHHHHhcCccccc-cCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHH
Confidence 57899999998752 2223322111 0111112345566778899999999999887 99999
Q ss_pred HHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhh
Q 005663 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~l 509 (684)
+++|+...+. ..|.... ...++.+|+++|. ++++.+..+
T Consensus 117 l~~l~~~~~~--~~g~~~~--------~~~~~riI~atn~-~l~~~v~~g------------------------------ 155 (304)
T 1ojl_A 117 LRAIQEREVQ--RVGSNQT--------ISVDVRLIAATHR-DLAEEVSAG------------------------------ 155 (304)
T ss_dssp HHHHHSSBCC--BTTBCCC--------CBCCCEEEEEESS-CHHHHHHHT------------------------------
T ss_pred HHHHhcCEee--ecCCccc--------ccCCeEEEEecCc-cHHHHHHhC------------------------------
Confidence 9999944332 1121111 1234667777763 344444332
Q ss_pred hhhccchhHHhcCCChhhhcccce-EEEecccC--HHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcC
Q 005663 510 METVKSSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 510 l~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs--~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~ 586 (684)
.|+++|++||.. .+.++|+. .+|+..++..++..+..+ +.. ....+++++++.|.. |
T Consensus 156 ------------~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~----~~~--~~~~~s~~a~~~L~~--~ 215 (304)
T 1ojl_A 156 ------------RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAER----NRK--VVKGFTPQAMDLLIH--Y 215 (304)
T ss_dssp ------------SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHH----TTC--CCCCBCHHHHHHHHH--C
T ss_pred ------------CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHH----hcc--CccCCCHHHHHHHHc--C
Confidence 478999999965 58899999 588888887755443322 221 235799999999999 5
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccEEEechhccCcccCCCcceEEcCCChHHH-HHHHhhhhhhhhccc
Q 005663 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDR-YLAQHKRKDLETNVA 665 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vdee~v~~~~~~~~~~i~~~~g~l~~-~l~~~~~~~~~~~~~ 665 (684)
.|++++|+|++++++++..+-.. .|+.+++...-...... ....+.. .+++.|++.|...++
T Consensus 216 ~wpGnvReL~~~l~~~~~~~~~~--------------~i~~~~l~~~~~~~~~~---~~~~l~~~~~~~~e~~~i~~~l~ 278 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLLTGE--------------YISERELPLAIAATPIK---TEYSGEIQPLVDVEKEVILAALE 278 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHCCSS--------------SBCGGGSCGGGC----------CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC--------------cccHHhhhhhhccCCCc---cCCCcchhhHHHHHHHHHHHHHH
Confidence 67888999999999988643110 12222222110000000 0111222 467788888888888
Q ss_pred cCCCCC
Q 005663 666 GADGEP 671 (684)
Q Consensus 666 ~~~~~~ 671 (684)
.++|+.
T Consensus 279 ~~~gn~ 284 (304)
T 1ojl_A 279 KTGGNK 284 (304)
T ss_dssp TTTTCH
T ss_pred HcCCCH
Confidence 888774
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.2e-20 Score=193.70 Aligned_cols=222 Identities=21% Similarity=0.290 Sum_probs=166.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-CC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-~~ 356 (684)
.|+|++.+|+.|.+.+..+.+...... ....++.++||+||||||||++|+++|+.+ +.
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~--------------------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 72 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFT--------------------GKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 72 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSC--------------------TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHh--------------------CCCCCCceEEEECCCCccHHHHHHHHHHHcCCC
Confidence 379999999999999875444211100 011234899999999999999999999999 88
Q ss_pred CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcc
Q 005663 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.++++++. ..|+|+. +..++.+|..+. ...++||||||||.+...+... ......++++.||..|+|.
T Consensus 73 ~~~~i~~~~l~-~~~~g~~-~~~~~~lf~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~ 143 (322)
T 1xwi_A 73 TFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGV 143 (322)
T ss_dssp EEEEEECCSSC-CSSCCSC-HHHHHHHHHHHH----HTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCS
T ss_pred cEEEEEhHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcc
Confidence 99999999987 5788887 677888876543 3567999999999998765432 1223446889999999852
Q ss_pred eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccch
Q 005663 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
.. ...++++|+++|..+
T Consensus 144 ~~------------------~~~~v~vI~atn~~~--------------------------------------------- 160 (322)
T 1xwi_A 144 GV------------------DNDGILVLGATNIPW--------------------------------------------- 160 (322)
T ss_dssp SS------------------CCTTEEEEEEESCTT---------------------------------------------
T ss_pred cc------------------cCCCEEEEEecCCcc---------------------------------------------
Confidence 11 224577887776321
Q ss_pred hHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.|+.||+..+.++.++.++..+|+...+ . .....+++..++.|++. ..++..+.|+
T Consensus 161 -----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-----------~--~~~~~l~~~~l~~la~~--t~G~sgadl~ 220 (322)
T 1xwi_A 161 -----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL-----------G--TTQNSLTEADFRELGRK--TDGYSGADIS 220 (322)
T ss_dssp -----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-----------T--TCCBCCCHHHHHHHHHT--CTTCCHHHHH
T ss_pred -----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH-----------h--cCCCCCCHHHHHHHHHH--cCCCCHHHHH
Confidence 24588889999999999999999999887521 1 22455789999999994 5677789999
Q ss_pred HHHHHHHHHHHhcCC
Q 005663 597 SLLENILMDAMYEIP 611 (684)
Q Consensus 597 ~iIe~~l~~al~e~~ 611 (684)
.++++++..++.+..
T Consensus 221 ~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 221 IIVRDALMQPVRKVQ 235 (322)
T ss_dssp HHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888876643
No 19
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.84 E-value=3.9e-20 Score=189.01 Aligned_cols=221 Identities=17% Similarity=0.273 Sum_probs=146.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~--- 355 (684)
++|++.+++.+...+. +. +. ...++||+||||||||++|+++++.+.
T Consensus 8 ~ig~~~~~~~~~~~~~----~~----------~~----------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~ 57 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVS----HL----------AP----------------LDKPVLIIGERGTGKELIASRLHYLSSRWQ 57 (265)
T ss_dssp --CCCHHHHHHHHHHH----HH----------TT----------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTT
T ss_pred ceeCCHHHHHHHHHHH----HH----------hC----------------CCCCEEEECCCCCcHHHHHHHHHHhcCccC
Confidence 6899999998887774 10 00 126899999999999999999999884
Q ss_pred CCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHH
Q 005663 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.+|+.++|+.+.. ..++|...+ ..........+.+..+.+++||||||+.+... +|+.|++
T Consensus 58 ~~~~~v~~~~~~~~~~~~~l~g~~~~-~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~~Ll~ 122 (265)
T 2bjv_A 58 GPFISLNCAALNENLLDSELFGHEAG-AFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQEKLLR 122 (265)
T ss_dssp SCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHHHHHH
T ss_pred CCeEEEecCCCChhHHHHHhcCCccc-ccccccccccchhhhcCCcEEEEechHhcCHH--------------HHHHHHH
Confidence 6899999998742 112222111 11111111234455677899999999999887 9999999
Q ss_pred HHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhh
Q 005663 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~ 511 (684)
+|+...+. ..|.. .....++.+|+++|. ++++.+.
T Consensus 123 ~l~~~~~~--~~g~~--------~~~~~~~~iI~atn~-~~~~~~~---------------------------------- 157 (265)
T 2bjv_A 123 VIEYGELE--RVGGS--------QPLQVNVRLVCATNA-DLPAMVN---------------------------------- 157 (265)
T ss_dssp HHHHCEEC--CCCC----------CEECCCEEEEEESS-CHHHHHH----------------------------------
T ss_pred HHHhCCee--cCCCc--------ccccCCeEEEEecCc-CHHHHHH----------------------------------
Confidence 99843321 11111 122345677877763 2222221
Q ss_pred hccchhHHhcCCChhhhcccc-eEEEecccCH--HHHHHHHhchHHHHHHHHHHHHhhCCce--eecCHHHHHHHHHhcC
Q 005663 512 TVKSSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVK--LHFTENALRLIAKKAI 586 (684)
Q Consensus 512 ~v~~~dli~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~~~~~gv~--l~iteeAl~~La~~a~ 586 (684)
...|.++|++||+ ..+.++++++ +|+..++...+..+.++ .+.. ..+++++++.|.. +
T Consensus 158 --------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~-------~~~~~~~~~~~~a~~~L~~--~ 220 (265)
T 2bjv_A 158 --------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE-------IKLPLFPGFTERARETLLN--Y 220 (265)
T ss_dssp --------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH-------TTCSSCCCBCHHHHHHHHH--S
T ss_pred --------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH-------hCCCcccCcCHHHHHHHHh--C
Confidence 1247899999996 4689999987 78888877644333221 2323 3799999999998 5
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q 005663 587 SKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~a 606 (684)
.|++++|+|++++++++..+
T Consensus 221 ~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 221 RWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 66788999999999987643
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.83 E-value=6e-20 Score=193.98 Aligned_cols=220 Identities=21% Similarity=0.284 Sum_probs=163.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+|++.+|+.|.+++..+.+...... ....++.++||+||||||||++|+++|+.++.+|
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~--------------------~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 79 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFK--------------------GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 79 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCC--------------------TTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHh--------------------cCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE
Confidence 79999999999999864433211000 0112347999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|+|.. +..+..+|..+. ...++||||||||.+...+... .....+.+++.|+..|++...
T Consensus 80 ~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 80 FSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp EEEEHHHHH-TTTGGGH-HHHHHHHHHHHH----HTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGT
T ss_pred EEEchHHHh-hcccchH-HHHHHHHHHHHH----hcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccc
Confidence 999999987 5688877 677777776643 3567899999999998865432 223345689999999984211
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+++|..+
T Consensus 151 ------------------~~~~v~vi~atn~~~----------------------------------------------- 165 (322)
T 3eie_A 151 ------------------DSQGVLVLGATNIPW----------------------------------------------- 165 (322)
T ss_dssp ------------------SCCCEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------cCCceEEEEecCChh-----------------------------------------------
Confidence 123477777766211
Q ss_pred HhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005663 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 i~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~i 598 (684)
.+.|.|++||+..+.++.++.++..+|++..+ . .....++++.++.|++. ..++..+.|+++
T Consensus 166 ---~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~-----------~--~~~~~~~~~~l~~la~~--t~g~sg~di~~l 227 (322)
T 3eie_A 166 ---QLDSAIRRRFERRIYIPLPDLAARTTMFEINV-----------G--DTPCVLTKEDYRTLGAM--TEGYSGSDIAVV 227 (322)
T ss_dssp ---GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-----------T--TCCCCCCHHHHHHHHHT--TTTCCHHHHHHH
T ss_pred ---hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHh-----------c--cCCCCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 24688899999999999999999999987521 1 22456789999999994 567778999999
Q ss_pred HHHHHHHHHhcC
Q 005663 599 LENILMDAMYEI 610 (684)
Q Consensus 599 Ie~~l~~al~e~ 610 (684)
++.+...++.+.
T Consensus 228 ~~~a~~~a~r~~ 239 (322)
T 3eie_A 228 VKDALMQPIRKI 239 (322)
T ss_dssp HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888777654
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.82 E-value=1.7e-19 Score=193.70 Aligned_cols=221 Identities=21% Similarity=0.276 Sum_probs=158.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+|++.+|+.|.+++..+......... ...++.++||+||||||||++|+++|+.++.+
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~--------------------~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKG--------------------NRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCS--------------------SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhc--------------------CCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4899999999999988644332111000 01234789999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|.. +..+..++..+. ...++||||||||.+...+... .......+++.||..|++..
T Consensus 112 ~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 112 FFSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp EEEEEHHHHH-SCC---C-HHHHHHHHHHHH----HTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC
T ss_pred EEEeeHHHHh-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhccc
Confidence 9999999887 5688876 667777776542 3467999999999998765431 12233458899999998421
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
-...++++|+++|..+
T Consensus 183 ------------------~~~~~v~vI~atn~~~---------------------------------------------- 198 (355)
T 2qp9_X 183 ------------------NDSQGVLVLGATNIPW---------------------------------------------- 198 (355)
T ss_dssp ---------------------CCEEEEEEESCGG----------------------------------------------
T ss_pred ------------------ccCCCeEEEeecCCcc----------------------------------------------
Confidence 1224577887766321
Q ss_pred HHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHH
Q 005663 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 li~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.|.++.||+..+.++.++.++..+|+...+ . .....+++..++.|++. ..++..|.|++
T Consensus 199 ----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-----------~--~~~~~~~~~~l~~la~~--t~G~sg~dl~~ 259 (355)
T 2qp9_X 199 ----QLDSAIRRRFERRIYIPLPDLAARTTMFEINV-----------G--DTPSVLTKEDYRTLGAM--TEGYSGSDIAV 259 (355)
T ss_dssp ----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-----------T--TSCBCCCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHH-----------h--hCCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 24588889999999999999999999887521 1 12445789999999995 45677899999
Q ss_pred HHHHHHHHHHhcC
Q 005663 598 LLENILMDAMYEI 610 (684)
Q Consensus 598 iIe~~l~~al~e~ 610 (684)
++++++..++.+.
T Consensus 260 l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 260 VVKDALMQPIRKI 272 (355)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
No 22
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.81 E-value=5.6e-20 Score=198.77 Aligned_cols=198 Identities=23% Similarity=0.402 Sum_probs=143.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~--pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.++|++|++||||+.+|++++...+. +|+.+||+.+.+ +.++|+..+ .++.......+.++.+.+|+||||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g-~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKG-AFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSC-SSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcccc-ccCCcccccCChHhhcCCCeEEecCh
Confidence 67999999999999999999988854 399999998853 223333211 11111122346678889999999999
Q ss_pred cccchhhcccccCCCCchHHHHHHHHHHHhccee-eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 405 dkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v-~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
+.++.. +|..||++|+.+.+ .+ | ..+.+.+ ++.+|++++ .+++..+.++
T Consensus 232 ~~l~~~--------------~Q~~Ll~~l~~~~~~~~---g-----~~~~~~~---~~rii~at~-~~l~~~v~~g---- 281 (368)
T 3dzd_A 232 GELDQR--------------VQAKLLRVLETGSFTRL---G-----GNQKIEV---DIRVISATN-KNLEEEIKKG---- 281 (368)
T ss_dssp GGSCHH--------------HHHHHHHHHHHSEECCB---T-----CCCBEEC---CCEEEEEES-SCHHHHHHTT----
T ss_pred hhCCHH--------------HHHHHHHHHHhCCcccC---C-----CCcceee---eeEEEEecC-CCHHHHHHcC----
Confidence 999998 99999999984333 22 1 1222233 455666665 4666665544
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|+++|++|+.. .|.++||.+ +|+..++..++..+.++
T Consensus 282 --------------------------------------~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~- 322 (368)
T 3dzd_A 282 --------------------------------------NFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKE- 322 (368)
T ss_dssp --------------------------------------SSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHH-
T ss_pred --------------------------------------CccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHH-
Confidence 478999999987 488999999 89999988765544333
Q ss_pred HHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005663 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 561 ~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
+.. ....++++|++.|.. |+|++|+|+|+++|++++..
T Consensus 323 ---~~~--~~~~~~~~a~~~L~~--~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 323 ---YKK--NCFELSEETKEYLMK--QEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp ---TTC--CCCCBCHHHHHHHHT--CCCTTHHHHHHHHHHHHHHT
T ss_pred ---cCC--CCCCcCHHHHHHHHh--CCCCcHHHHHHHHHHHHHHh
Confidence 221 246799999999998 67888899999999998753
No 23
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.80 E-value=1.9e-19 Score=195.66 Aligned_cols=199 Identities=17% Similarity=0.330 Sum_probs=143.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccccc----CCccccchHHHHHHHHhcccchHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~l~~----sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++|++|++||||+++|++++.... .||+.+||+.+.+ +..+|+..+. +........+.++.+.+|+|||||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~-~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGA-FTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTS-STTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCC-CCCcccccCCceeeCCCcEEEEcC
Confidence 6789999999999999999988774 6899999998753 2334433211 111112245678889999999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccC
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~ 483 (684)
|+.++.. +|..||++|+.+.+. ..+....+. .++.+|+++| .++++.+.++
T Consensus 240 i~~l~~~--------------~q~~Ll~~l~~~~~~-------~~g~~~~~~---~~~rii~at~-~~l~~~~~~g---- 290 (387)
T 1ny5_A 240 IGELSLE--------------AQAKLLRVIESGKFY-------RLGGRKEIE---VNVRILAATN-RNIKELVKEG---- 290 (387)
T ss_dssp GGGCCHH--------------HHHHHHHHHHHSEEC-------CBTCCSBEE---CCCEEEEEES-SCHHHHHHTT----
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEE-------eCCCCceee---ccEEEEEeCC-CCHHHHHHcC----
Confidence 9999998 999999999844332 111122222 3455666665 4666665544
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCH--HHHHHHHhchHHHHHHHH
Q 005663 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|+++|+.|+.. .|.++||.+ +|+..++..++..+.+++
T Consensus 291 --------------------------------------~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~ 332 (387)
T 1ny5_A 291 --------------------------------------KFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKY 332 (387)
T ss_dssp --------------------------------------SSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred --------------------------------------CccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHc
Confidence 477899999965 588899986 899988887655443332
Q ss_pred HHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005663 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 561 ~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
.. ....+++++++.|.. |+|++|+|+|+++|++++..
T Consensus 333 ----~~--~~~~~~~~a~~~l~~--~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 333 ----AK--EVEGFTKSAQELLLS--YPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp ----TC--CCCEECHHHHHHHHH--SCCTTHHHHHHHHHHHHHHH
T ss_pred ----CC--CCCCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHHh
Confidence 21 134699999999999 67889999999999998864
No 24
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.80 E-value=3.1e-20 Score=218.04 Aligned_cols=223 Identities=21% Similarity=0.265 Sum_probs=142.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|.|++++|+.|.+.+..+.++.....+ .+ ..++.++||+||||||||++|+++|.+++.+|
T Consensus 479 iggl~~~k~~l~e~v~~p~~~p~~f~~----~g---------------~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f 539 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEHPDKFLK----FG---------------MTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTCSGGGSS----SC---------------CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE
T ss_pred hCCHHHHHHHHHHHHHhhhhCHHHHHh----cC---------------CCCCceEEEecCCCCCchHHHHHHHHHhCCce
Confidence 789999999999988644332111100 00 11347899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. +.|+|++ ++.++.+|..+. ...+|||||||||.+...|+....+.+...+++.++||..|||..
T Consensus 540 ~~v~~~~l~-s~~vGes-e~~vr~lF~~Ar----~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~- 612 (806)
T 3cf2_A 540 ISIKGPELL-TMWFGES-EANVREIFDKAR----QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 612 (806)
T ss_dssp EECCHHHHH-TTTCSSC-HHHHHHHHHHHH----TTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-
T ss_pred EEeccchhh-ccccchH-HHHHHHHHHHHH----HcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-
Confidence 999999998 7899999 788999998874 357899999999999998764333333344569999999999621
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+|+|..+
T Consensus 613 ------------------~~~~V~vi~aTN~p~----------------------------------------------- 627 (806)
T 3cf2_A 613 ------------------TKKNVFIIGATNRPD----------------------------------------------- 627 (806)
T ss_dssp ------------------SSSSEEEECC-CCSS-----------------------------------------------
T ss_pred ------------------CCCCEEEEEeCCCch-----------------------------------------------
Confidence 123477777776322
Q ss_pred HhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|+|+. |||..|.++.++.++..+|++..+.. ..+. ++--++.|++. ..++...+|+
T Consensus 628 ---~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~-------------~~~~-~~~dl~~la~~--t~g~SGadi~ 688 (806)
T 3cf2_A 628 ---IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK-------------SPVA-KDVDLEFLAKM--TNGFSGADLT 688 (806)
T ss_dssp ---SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSC-------------C--C-CC------------------CHH
T ss_pred ---hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcC-------------CCCC-CCCCHHHHHHh--CCCCCHHHHH
Confidence 24577775 99999999999999999999864211 1111 12235677773 4566667899
Q ss_pred HHHHHHHHHHHhcCC
Q 005663 597 SLLENILMDAMYEIP 611 (684)
Q Consensus 597 ~iIe~~l~~al~e~~ 611 (684)
+++..+...++.+..
T Consensus 689 ~l~~~A~~~a~r~~~ 703 (806)
T 3cf2_A 689 EICQRACKLAIRESI 703 (806)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888876643
No 25
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.80 E-value=4.8e-19 Score=185.55 Aligned_cols=222 Identities=22% Similarity=0.272 Sum_probs=153.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+|++.+|+.|.+.+..+......... .+. .++.++||+||||||||++|+++|+.++.+|
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~---------------~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~ 77 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLK----FGM---------------TPSKGVLFYGPPGCGKTLLAKAIANECQANF 77 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHH----HCC---------------CCCSEEEEECSSSSSHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHH----cCC---------------CCCceEEEECCCCcCHHHHHHHHHHHhCCCE
Confidence 799999999999998744332111110 000 1237899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|+|+. +..+..+|..+. ...++||||||||.+...++...........++++.||..|++..
T Consensus 78 i~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~- 150 (301)
T 3cf0_A 78 ISIKGPELL-TMWFGES-EANVREIFDKAR----QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 150 (301)
T ss_dssp EEECHHHHH-HHHHTTC-TTHHHHHHHHHH----HTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-
T ss_pred EEEEhHHHH-hhhcCch-HHHHHHHHHHHH----hcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-
Confidence 999999886 4577776 456667776543 245789999999999987653322222233458999999998421
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+++|..+
T Consensus 151 ------------------~~~~v~vi~atn~~~----------------------------------------------- 165 (301)
T 3cf0_A 151 ------------------TKKNVFIIGATNRPD----------------------------------------------- 165 (301)
T ss_dssp ------------------TTSSEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------CCCCEEEEEecCCcc-----------------------------------------------
Confidence 123577787776321
Q ss_pred HhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.++. ||+.++.++.++.++..+|+...+ ...+....++ ++.++.. ..++..++|+
T Consensus 166 ---~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l-----------~~~~~~~~~~---~~~la~~--~~g~sg~dl~ 226 (301)
T 3cf0_A 166 ---IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL-----------RKSPVAKDVD---LEFLAKM--TNGFSGADLT 226 (301)
T ss_dssp ---GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------TTSCBCSSCC---HHHHHHT--CSSCCHHHHH
T ss_pred ---ccChHHhcCCccceEEecCCcCHHHHHHHHHHHH-----------ccCCCCccch---HHHHHHH--cCCCCHHHHH
Confidence 13456665 999999999999999999886522 1122222233 4566664 3344456999
Q ss_pred HHHHHHHHHHHhcC
Q 005663 597 SLLENILMDAMYEI 610 (684)
Q Consensus 597 ~iIe~~l~~al~e~ 610 (684)
+++++++..++.+.
T Consensus 227 ~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 227 EICQRACKLAIRES 240 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877553
No 26
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.79 E-value=8.4e-19 Score=193.89 Aligned_cols=221 Identities=20% Similarity=0.287 Sum_probs=156.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-CC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-~~ 356 (684)
.|+|++.+|+.|.+.+..+.+..... .....++.++||+||||||||++|+++|+.+ +.
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~--------------------~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~ 194 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLF--------------------TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 194 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTT--------------------SGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHh--------------------hccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 37999999999999885433321000 0011234899999999999999999999999 88
Q ss_pred CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcc
Q 005663 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...+... ......++++.||..|++.
T Consensus 195 ~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~ 265 (444)
T 2zan_A 195 TFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGV 265 (444)
T ss_dssp EEEEECCC----------C-CCTHHHHHHHHH----HSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCS
T ss_pred CEEEEeHHHHH-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCc
Confidence 99999999987 5688876 556677765542 3467999999999998764432 1223446889999998842
Q ss_pred eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccch
Q 005663 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
. ....+++||+++|..+
T Consensus 266 ~------------------~~~~~v~vI~atn~~~--------------------------------------------- 282 (444)
T 2zan_A 266 G------------------VDNDGILVLGATNIPW--------------------------------------------- 282 (444)
T ss_dssp S------------------CCCSSCEEEEEESCGG---------------------------------------------
T ss_pred c------------------cCCCCEEEEecCCCcc---------------------------------------------
Confidence 1 1224577887776321
Q ss_pred hHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.|++||+.++.++.++.++...|+...+ . .....+++..++.|++. ..++..+.|+
T Consensus 283 -----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-----------~--~~~~~l~~~~l~~la~~--t~G~sgadl~ 342 (444)
T 2zan_A 283 -----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHL-----------G--STQNSLTEADFQELGRK--TDGYSGADIS 342 (444)
T ss_dssp -----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-----------T--TSCEECCHHHHHHHHHH--TTTCCHHHHH
T ss_pred -----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHH-----------h--cCCCCCCHHHHHHHHHH--cCCCCHHHHH
Confidence 24588899999999999999999998887521 1 22456789999999995 5677789999
Q ss_pred HHHHHHHHHHHhcC
Q 005663 597 SLLENILMDAMYEI 610 (684)
Q Consensus 597 ~iIe~~l~~al~e~ 610 (684)
.++..++..++.+.
T Consensus 343 ~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 343 IIVRDALMQPVRKV 356 (444)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887664
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=6.6e-18 Score=178.00 Aligned_cols=205 Identities=24% Similarity=0.280 Sum_probs=147.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++|++.+++.+...+.....+ + .+..++||+||||||||++|+++|+.++.+|
T Consensus 31 iiG~~~~~~~l~~~l~~~~~~-----------~----------------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~ 83 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKKR-----------N----------------ECLDHILFSGPAGLGKTTLANIISYEMSANI 83 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHT-----------T----------------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCE
T ss_pred hCChHHHHHHHHHHHHHHHhc-----------C----------------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 799999999999888521110 0 0126899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++..+.. ...+...+.. .+.+++||||||+.+... +|+.|++.|++..+
T Consensus 84 ~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~~ 135 (338)
T 3pfi_A 84 KTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYRL 135 (338)
T ss_dssp EEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCC
T ss_pred EEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHHhccc
Confidence 9999987642 2233343332 246799999999999877 99999999985443
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.+.... ....+.+.++..++++|+++|..+
T Consensus 136 ~~~~~~---~~~~~~~~~~~~~~~~i~atn~~~----------------------------------------------- 165 (338)
T 3pfi_A 136 DIIIGS---GPAAQTIKIDLPKFTLIGATTRAG----------------------------------------------- 165 (338)
T ss_dssp ------------CCCCCCCCCCCEEEEEESCGG-----------------------------------------------
T ss_pred hhhccc---CccccceecCCCCeEEEEeCCCcc-----------------------------------------------
Confidence 321000 001112234444678888776211
Q ss_pred HhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005663 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 i~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~i 598 (684)
.+.|+|++|++.++.+++++.+++.+++...+.. . .+.+++++++.|++. +++++|.+.++
T Consensus 166 ---~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-----------~--~~~~~~~~~~~l~~~---~~G~~r~l~~~ 226 (338)
T 3pfi_A 166 ---MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-----------L--NKTCEEKAALEIAKR---SRSTPRIALRL 226 (338)
T ss_dssp ---GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-----------T--TCEECHHHHHHHHHT---TTTCHHHHHHH
T ss_pred ---ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-----------c--CCCCCHHHHHHHHHH---HCcCHHHHHHH
Confidence 2568999999999999999999999888753221 1 466899999999993 56778999999
Q ss_pred HHHHHHHHH
Q 005663 599 LENILMDAM 607 (684)
Q Consensus 599 Ie~~l~~al 607 (684)
+++++..+.
T Consensus 227 l~~~~~~a~ 235 (338)
T 3pfi_A 227 LKRVRDFAD 235 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999765543
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.79 E-value=2.2e-18 Score=186.58 Aligned_cols=223 Identities=23% Similarity=0.309 Sum_probs=153.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+|++.+++.|...+.....+... ...+..++.++||+||||||||++|+++|+.++.+
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPEL--------------------FTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT--------------------SCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHH--------------------hcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 3799999999999988643331100 01112234899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++|+++. ..|+|.. +..+..++..+. ...++||||||||.+...+.. +.......+++.|+..|+|..
T Consensus 176 ~~~v~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 176 FFNISAASLT-SKYVGEG-EKLVRALFAVAR----ELQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEEECSCCC--------C-HHHHHHHHHHHH----HSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC
T ss_pred EEEeeHHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhccc
Confidence 9999999987 5677776 556666665543 246689999999999765432 122234568999999998532
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
. ....++++|+++|..+
T Consensus 247 ~-----------------~~~~~v~vI~atn~~~---------------------------------------------- 263 (389)
T 3vfd_A 247 S-----------------AGDDRVLVMGATNRPQ---------------------------------------------- 263 (389)
T ss_dssp ----------------------CEEEEEEESCGG----------------------------------------------
T ss_pred c-----------------cCCCCEEEEEecCCch----------------------------------------------
Confidence 1 1123577887766211
Q ss_pred HHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHH
Q 005663 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 li~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.+.+++||+.++.+..++.+++.+|+...+ .. ....++++++..|++. ..++..+.|+.
T Consensus 264 ----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~-----------~~--~~~~l~~~~~~~la~~--~~g~~~~~l~~ 324 (389)
T 3vfd_A 264 ----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLL-----------CK--QGSPLTQKELAQLARM--TDGYSGSDLTA 324 (389)
T ss_dssp ----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-----------TT--SCCCSCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHH-----------Hh--cCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 24588889999999999999999999886521 11 1456899999999985 45666789999
Q ss_pred HHHHHHHHHHhcCC
Q 005663 598 LLENILMDAMYEIP 611 (684)
Q Consensus 598 iIe~~l~~al~e~~ 611 (684)
++......++.++.
T Consensus 325 L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 325 LAKDAALGPIRELK 338 (389)
T ss_dssp HHHHHTTHHHHTSC
T ss_pred HHHHHHHHHHHhhh
Confidence 99888877777654
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.79 E-value=2.9e-18 Score=184.00 Aligned_cols=223 Identities=20% Similarity=0.285 Sum_probs=159.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+|++.+++.|.+.+..+..+... ......++.++||+||||||||++|+++|+.++.+
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~--------------------~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDI--------------------FTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT--------------------SCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhChHh--------------------HhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4899999999999988643322100 00111234799999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|.. +..+..++..+. ...++||||||||.+...+.. +.+.....+++.||..|++..
T Consensus 145 ~~~i~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 145 FFSISASSLT-SKWVGEG-EKMVRALFAVAR----CQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp EEEEEGGGGC-CSSTTHH-HHHHHHHHHHHH----HTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC--
T ss_pred EEEEehHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhccc
Confidence 9999999987 5677776 566666665432 346799999999999876432 123334468899999998432
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
. -...++++|+++|..+
T Consensus 216 ~-----------------~~~~~v~vI~atn~~~---------------------------------------------- 232 (357)
T 3d8b_A 216 T-----------------SSEDRILVVGATNRPQ---------------------------------------------- 232 (357)
T ss_dssp -------------------CCCCEEEEEEESCGG----------------------------------------------
T ss_pred c-----------------cCCCCEEEEEecCChh----------------------------------------------
Confidence 1 0123577887766211
Q ss_pred HHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHH
Q 005663 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 li~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.+.+++||+..+.++.++.++..+|+...+ ... .+.+++++++.|++. ..++..+.|+.
T Consensus 233 ----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~-----------~~~--~~~l~~~~l~~la~~--t~G~s~~dl~~ 293 (357)
T 3d8b_A 233 ----EIDEAARRRLVKRLYIPLPEASARKQIVINLM-----------SKE--QCCLSEEEIEQIVQQ--SDAFSGADMTQ 293 (357)
T ss_dssp ----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-----------HTS--CBCCCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH-----------hhc--CCCccHHHHHHHHHH--cCCCCHHHHHH
Confidence 13578888999999999999999998886521 111 456889999999996 45666789999
Q ss_pred HHHHHHHHHHhcCC
Q 005663 598 LLENILMDAMYEIP 611 (684)
Q Consensus 598 iIe~~l~~al~e~~ 611 (684)
+++.....++.++.
T Consensus 294 l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 294 LCREASLGPIRSLQ 307 (357)
T ss_dssp HHHHHHTHHHHHCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99988877776553
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=3.1e-18 Score=177.31 Aligned_cols=223 Identities=26% Similarity=0.340 Sum_probs=156.8
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+|++.+++.|...+..+..+.... ..+..++.++||+||||||||++|+++|+.++.+|
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~~~~~--------------------~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVRPELF--------------------TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHCGGGS--------------------CGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred hCChHHHHHHHHHHHHhhhhCHHHH--------------------hcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 7999999999999886433211000 01112347999999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..+.|.. +..++.++..+. ...++||||||||.+...+... .......+++.||..+++...
T Consensus 83 ~~i~~~~l~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 83 LNISAASLT-SKYVGDG-EKLVRALFAVAR----HMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp EEEESTTTS-SSSCSCH-HHHHHHHHHHHH----HTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC-
T ss_pred EEeeHHHHh-hcccchH-HHHHHHHHHHHH----HcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhcccc
Confidence 999999887 5577765 566666665432 3567999999999998764321 122234588899999984221
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
. ....++++|+++|..+
T Consensus 154 ~----------------~~~~~v~vi~~tn~~~----------------------------------------------- 170 (297)
T 3b9p_A 154 N----------------PDGDRIVVLAATNRPQ----------------------------------------------- 170 (297)
T ss_dssp ---------------------CEEEEEEESCGG-----------------------------------------------
T ss_pred c----------------CCCCcEEEEeecCChh-----------------------------------------------
Confidence 0 1123467777766211
Q ss_pred HhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005663 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 i~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~i 598 (684)
.+.+.++.||+..+.++.++.++...|+...+ ... ...+++++++.|++. ..++..+.|+.+
T Consensus 171 ---~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~-----------~~~--~~~~~~~~~~~la~~--~~g~~~~~l~~l 232 (297)
T 3b9p_A 171 ---ELDEAALRRFTKRVYVSLPDEQTRELLLNRLL-----------QKQ--GSPLDTEALRRLAKI--TDGYSGSDLTAL 232 (297)
T ss_dssp ---GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-----------GGG--SCCSCHHHHHHHHHH--TTTCCHHHHHHH
T ss_pred ---hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHH-----------Hhc--CCCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 24578888999999999999999888876521 111 345789999999995 456667899999
Q ss_pred HHHHHHHHHhcCC
Q 005663 599 LENILMDAMYEIP 611 (684)
Q Consensus 599 Ie~~l~~al~e~~ 611 (684)
++.....++.+..
T Consensus 233 ~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 233 AKDAALEPIRELN 245 (297)
T ss_dssp HHHHTTHHHHTCC
T ss_pred HHHHHHHHHHHHh
Confidence 9988877776653
No 31
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.77 E-value=8.7e-19 Score=205.82 Aligned_cols=219 Identities=21% Similarity=0.285 Sum_probs=162.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|.|++++|+.|.+.+..+.+....... .+ ..+|.++||+||||||||+||+++|+.++.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~----~g---------------~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKA----IG---------------VKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTS----CC---------------CCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhh----cC---------------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4899999999999998754443111100 00 0235899999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|+. +..++.+|..+.. ..++||||||||.+.+.++.. .+....++.++||..|+|..
T Consensus 266 ~~~v~~~~l~-sk~~ges-e~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~ 336 (806)
T 3cf2_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp EEEEEHHHHH-SSCTTHH-HHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCC
T ss_pred EEEEEhHHhh-cccchHH-HHHHHHHHHHHHH----cCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhccc
Confidence 9999999998 6799988 7889999987753 578999999999999886542 23334568999999999521
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+++|..+
T Consensus 337 -------------------~~~~V~VIaaTN~~d---------------------------------------------- 351 (806)
T 3cf2_A 337 -------------------QRAHVIVMAATNRPN---------------------------------------------- 351 (806)
T ss_dssp -------------------GGGCEEEEEECSSTT----------------------------------------------
T ss_pred -------------------ccCCEEEEEecCChh----------------------------------------------
Confidence 123577787776322
Q ss_pred HHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHH
Q 005663 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 li~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~L 595 (684)
.+.|.|+. ||+..|.++.++.++..+|++..+ .+..+. ++..+..|+.. +.++....|
T Consensus 352 ----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l-------------~~~~~~-~dvdl~~lA~~--T~GfsgaDL 411 (806)
T 3cf2_A 352 ----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT-------------KNMKLA-DDVDLEQVANE--THGHVGADL 411 (806)
T ss_dssp ----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC-------------SSSEEC-TTCCHHHHHHH--CCSCCHHHH
T ss_pred ----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh-------------cCCCCC-cccCHHHHHHh--cCCCCHHHH
Confidence 24567765 999999999999999999987531 111221 22336778885 566777899
Q ss_pred HHHHHHHHHHHHhc
Q 005663 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
..++.++...++.+
T Consensus 412 ~~Lv~eA~~~A~~r 425 (806)
T 3cf2_A 412 AALCSEAALQAIRK 425 (806)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99998887776654
No 32
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=3.3e-17 Score=166.55 Aligned_cols=219 Identities=22% Similarity=0.281 Sum_probs=145.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+|++.+|+.+...+.. ... ...-... .. ..+.++||+||||||||++|+++|+.++.++
T Consensus 14 i~G~~~~~~~l~~~~~~-~~~----~~~~~~~--------------~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 73 (257)
T 1lv7_A 14 VAGCDEAKEEVAELVEY-LRE----PSRFQKL--------------GG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 73 (257)
T ss_dssp SCSCHHHHHHTHHHHHH-HHC----GGGC--------------------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred hcCcHHHHHHHHHHHHH-HhC----HHHHHHc--------------CC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCE
Confidence 79999999999987641 111 0000000 00 1136899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..+.|.. ...+..+++.+. ...++++||||||.+...+.....+........++.||..|++..
T Consensus 74 ~~i~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~- 146 (257)
T 1lv7_A 74 FTISGSDFV-EMFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE- 146 (257)
T ss_dssp EEECSCSST-TSCCCCC-HHHHHHHHHHHH----TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-
T ss_pred EEEeHHHHH-HHhhhhh-HHHHHHHHHHHH----HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-
Confidence 999999887 4577776 556667766542 235689999999999876543222223333457888888888421
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+++|..+
T Consensus 147 ------------------~~~~~~vI~~tn~~~----------------------------------------------- 161 (257)
T 1lv7_A 147 ------------------GNEGIIVIAATNRPD----------------------------------------------- 161 (257)
T ss_dssp ------------------SSSCEEEEEEESCTT-----------------------------------------------
T ss_pred ------------------cCCCEEEEEeeCCch-----------------------------------------------
Confidence 123467777765211
Q ss_pred HhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHH-HHHHHHhcCCCCCChHHH
Q 005663 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 i~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA-l~~La~~a~~~~~GAR~L 595 (684)
.+.|.++. ||+..+.+..++.++..+|+...+ . .+.+++++ +..++.. ..++++|+|
T Consensus 162 ---~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~-----------~----~~~l~~~~~~~~la~~--~~G~~~~dl 221 (257)
T 1lv7_A 162 ---VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM-----------R----RVPLAPDIDAAIIARG--TPGFSGADL 221 (257)
T ss_dssp ---TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------T----TSCBCTTCCHHHHHHT--CTTCCHHHH
T ss_pred ---hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH-----------h----cCCCCccccHHHHHHH--cCCCCHHHH
Confidence 12345554 999999999999999888875421 1 11233333 4555552 345588999
Q ss_pred HHHHHHHHHHHHhc
Q 005663 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
++++++++..+..+
T Consensus 222 ~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 222 ANLVNEAALFAARG 235 (257)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998877653
No 33
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.75 E-value=2.1e-17 Score=184.53 Aligned_cols=218 Identities=25% Similarity=0.295 Sum_probs=147.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+|++++|+.+.+.+.. ++...... ..+ .. .+.++||+||||||||++|+++|..++.||
T Consensus 18 i~G~~~~~~~l~e~v~~-l~~~~~~~----~~g--------------~~-~p~gvLL~GppGtGKT~Laraia~~~~~~f 77 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEF-LKDPSKFN----RIG--------------AR-MPKGILLVGPPGTGKTLLARAVAGEANVPF 77 (476)
T ss_dssp CCSCHHHHHHHHHHHHH-HHCTHHHH----TTT--------------CC-CCSEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred hCCcHHHHHHHHHHHHH-hhChHHHh----hcC--------------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 79999999999988752 22100000 000 11 136799999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...++....+.+...+.+++.||..|++..
T Consensus 78 ~~is~~~~~-~~~~g~~-~~~~r~lf~~A~----~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~- 150 (476)
T 2ce7_A 78 FHISGSDFV-ELFVGVG-AARVRDLFAQAK----AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD- 150 (476)
T ss_dssp EEEEGGGTT-TCCTTHH-HHHHHHHHHHHH----HTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-
T ss_pred eeCCHHHHH-HHHhccc-HHHHHHHHHHHH----hcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-
Confidence 999999987 4578876 566777776653 246789999999999887654334455566678999999998421
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+++|..+
T Consensus 151 ------------------~~~~viVIaaTn~~~----------------------------------------------- 165 (476)
T 2ce7_A 151 ------------------SKEGIIVMAATNRPD----------------------------------------------- 165 (476)
T ss_dssp ------------------GGGTEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------CCCCEEEEEecCChh-----------------------------------------------
Confidence 123577787776321
Q ss_pred HhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHH-HHHHHHHhcCCCCCChHHH
Q 005663 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 i~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~itee-Al~~La~~a~~~~~GAR~L 595 (684)
.+.|.++ +||+..+.++.++.++..+|++..+ +. ..+.++ .+..|+.. ..++-.|+|
T Consensus 166 ---~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~-----------~~----~~l~~~v~l~~la~~--t~G~sgadL 225 (476)
T 2ce7_A 166 ---ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT-----------RN----KPLAEDVNLEIIAKR--TPGFVGADL 225 (476)
T ss_dssp ---GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------TT----SCBCTTCCHHHHHHT--CTTCCHHHH
T ss_pred ---hhchhhcccCcceeEeecCCCCHHHHHHHHHHHH-----------Hh----CCCcchhhHHHHHHh--cCCCcHHHH
Confidence 1234554 5999999999999999988876421 11 112222 26667763 334445899
Q ss_pred HHHHHHHHHHHHh
Q 005663 596 RSLLENILMDAMY 608 (684)
Q Consensus 596 r~iIe~~l~~al~ 608 (684)
+++++++...+..
T Consensus 226 ~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 226 ENLVNEAALLAAR 238 (476)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.75 E-value=4.6e-17 Score=164.54 Aligned_cols=220 Identities=22% Similarity=0.253 Sum_probs=133.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+|++.+|+.|...+.. ... ...-...+. .++.++||+||||||||++|+++|+.++.+
T Consensus 7 ~i~G~~~~~~~l~~~~~~-~~~----~~~~~~~g~---------------~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDY-LKS----PERFLQLGA---------------KVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHC----CC------C---------------CCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCHHHHHHHHHHHHHH-HHC----HHHHHHcCC---------------CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 379999999999887742 110 000000000 123789999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccC-CCCchHHHHHHHHHHHhcc
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~-~d~~~e~vq~~LL~~LEg~ 436 (684)
++.++++++. ..+.|.. ...+..++..+. ...++||||||||.+...+.....+ .+.........|+..+++.
T Consensus 67 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 67 FLAMAGAEFV-EVIGGLG-AARVRSLFKEAR----ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp EEEEETTTTS-SSSTTHH-HHHHHHHHHHHH----HTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred EEEechHHHH-hhccChh-HHHHHHHHHHHH----hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 9999999886 4455554 455666665432 2357899999999997764321100 1112223556666666631
Q ss_pred eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccch
Q 005663 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
. ...++++|+++|..+
T Consensus 141 ~-------------------~~~~~~vi~~tn~~~--------------------------------------------- 156 (262)
T 2qz4_A 141 G-------------------TTDHVIVLASTNRAD--------------------------------------------- 156 (262)
T ss_dssp C-------------------TTCCEEEEEEESCGG---------------------------------------------
T ss_pred C-------------------CCCCEEEEecCCChh---------------------------------------------
Confidence 0 123577777766311
Q ss_pred hHHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHH-HHHHHHHhcCCCCCChH
Q 005663 517 DLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGAR 593 (684)
Q Consensus 517 dli~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~itee-Al~~La~~a~~~~~GAR 593 (684)
.+.+.++. ||+..+.++.++.++..+|+...+..+ .+..+.+ .+..|++. ..++..|
T Consensus 157 -----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~-------------~~~~~~~~~~~~l~~~--~~g~~~~ 216 (262)
T 2qz4_A 157 -----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL-------------KLTQSSTFYSQRLAEL--TPGFSGA 216 (262)
T ss_dssp -----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT-------------TCCBTHHHHHHHHHHT--CTTCCHH
T ss_pred -----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC-------------CCCcchhhHHHHHHHH--CCCCCHH
Confidence 12355665 999999999999999999887643221 2334444 35677774 4455568
Q ss_pred HHHHHHHHHHHHHH
Q 005663 594 GLRSLLENILMDAM 607 (684)
Q Consensus 594 ~Lr~iIe~~l~~al 607 (684)
.|+++++++...+.
T Consensus 217 ~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 217 DIANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99998887765543
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=1.7e-17 Score=170.56 Aligned_cols=221 Identities=25% Similarity=0.324 Sum_probs=146.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+|++.+++.|...+............ .+. .++.++||+||||||||++|+++|+.++.++
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~----~~~---------------~~~~~~ll~G~~GtGKT~la~~la~~~~~~~ 79 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEK----VGI---------------EPPKGILLYGPPGTGKTLLAKAVATETNATF 79 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHH----HCC---------------CCCSEEEEESSSSSSHHHHHHHHHHHTTCEE
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHh----cCC---------------CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 799999999999988643222111000 000 1237899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..+.|.. ...+..++..+. ...++||||||||.+...+.....+. ....+..|+.+++...
T Consensus 80 ~~v~~~~~~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~~~~---~~~~~~~l~~ll~~~~- 149 (285)
T 3h4m_A 80 IRVVGSELV-KKFIGEG-ASLVKDIFKLAK----EKAPSIIFIDEIDAIAAKRTDALTGG---DREVQRTLMQLLAEMD- 149 (285)
T ss_dssp EEEEGGGGC-CCSTTHH-HHHHHHHHHHHH----HTCSEEEEEETTHHHHBCCSSSCCGG---GGHHHHHHHHHHHHHH-
T ss_pred EEEehHHHH-HhccchH-HHHHHHHHHHHH----HcCCeEEEEECHHHhcccCccccCCc---cHHHHHHHHHHHHHhh-
Confidence 999999887 4577765 555666665432 34568999999999987644322111 2235666666654100
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
+ . -...++++|+|+|..+
T Consensus 150 -----~--~--------~~~~~~~vI~ttn~~~----------------------------------------------- 167 (285)
T 3h4m_A 150 -----G--F--------DARGDVKIIGATNRPD----------------------------------------------- 167 (285)
T ss_dssp -----T--T--------CSSSSEEEEEECSCGG-----------------------------------------------
T ss_pred -----C--C--------CCCCCEEEEEeCCCch-----------------------------------------------
Confidence 0 0 0113477787776321
Q ss_pred HhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHH
Q 005663 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 i~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.+.++. ||+.++.+++++.++..+|+...+ ... .+. .+..+..|+.. ..++..|.++
T Consensus 168 ---~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~-----------~~~--~~~-~~~~~~~l~~~--~~g~~~~~i~ 228 (285)
T 3h4m_A 168 ---ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT-----------RKM--NLA-EDVNLEEIAKM--TEGCVGAELK 228 (285)
T ss_dssp ---GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH-----------TTS--CBC-TTCCHHHHHHH--CTTCCHHHHH
T ss_pred ---hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH-----------hcC--CCC-CcCCHHHHHHH--cCCCCHHHHH
Confidence 13466666 999999999999999999886421 111 111 22235667764 4566779999
Q ss_pred HHHHHHHHHHHhc
Q 005663 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
.++..+...++.+
T Consensus 229 ~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 229 AICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887654
No 36
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.72 E-value=1e-16 Score=168.70 Aligned_cols=204 Identities=22% Similarity=0.257 Sum_probs=128.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-------CEEEEecccccc----------------------------CCccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV-------PFVIADATTLTQ----------------------------AGYVGED 375 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~-------pfv~v~~s~l~~----------------------------sgyvG~~ 375 (684)
.++||+||||||||++|+++++.++. +| +|..... ..++|..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccchhhhhccccccCCCcccccCCCcchhhheeec
Confidence 67999999999999999999998863 22 2322210 1122211
Q ss_pred h-HHHHHH-HHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCc
Q 005663 376 V-ESILYK-LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN 453 (684)
Q Consensus 376 ~-~~~l~~-l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~ 453 (684)
. ...+.. ......+.+..+.++|||||||+++... +|+.|+++|+.....+...|..
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~~------- 181 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGLS------- 181 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTCC-------
T ss_pred hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecceE-------
Confidence 0 000000 0111234455667899999999999887 9999999999543333222211
Q ss_pred eEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce
Q 005663 454 IQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV 533 (684)
Q Consensus 454 i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~ 533 (684)
.. ...++++|+++|..+ ..+.++|++||+.
T Consensus 182 ~~-~~~~~~li~~~n~~~-------------------------------------------------~~l~~~L~~R~~~ 211 (350)
T 1g8p_A 182 IR-HPARFVLVGSGNPEE-------------------------------------------------GDLRPQLLDRFGL 211 (350)
T ss_dssp EE-EECCEEEEEEECSCS-------------------------------------------------CCCCHHHHTTCSE
T ss_pred Ee-eCCceEEEEEeCCCC-------------------------------------------------CCCCHHHHhhcce
Confidence 11 223677888766210 1367999999998
Q ss_pred EEEeccc-CHHHHHHHHhchHHH----------------HHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCC-ChHHH
Q 005663 534 LVSLLAL-TENQLVQVLTEPKNA----------------LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-GARGL 595 (684)
Q Consensus 534 iI~f~pL-s~eel~~Il~~~l~~----------------L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~-GAR~L 595 (684)
.+.++++ ..++..+|+...+.. ..+++..........+.++++++++|++.++..+. ++|.+
T Consensus 212 ~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~ 291 (350)
T 1g8p_A 212 SVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGE 291 (350)
T ss_dssp EEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 8999999 466666777652110 00111100111122458999999999998877676 68999
Q ss_pred HHHHHHHHHHHHh
Q 005663 596 RSLLENILMDAMY 608 (684)
Q Consensus 596 r~iIe~~l~~al~ 608 (684)
.++++.+...+..
T Consensus 292 ~~ll~~a~~~A~~ 304 (350)
T 1g8p_A 292 LTLLRSARALAAL 304 (350)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999987766543
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.72 E-value=3.7e-16 Score=162.95 Aligned_cols=203 Identities=23% Similarity=0.344 Sum_probs=143.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++|++.+++.+...+...... . ..+.++||+||||||||++|+++++.++.+|
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~----~-----------------------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKAR----K-----------------------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH----C-----------------------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred hhCHHHHHHHHHHHHHHHHcc----C-----------------------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 699999999998887521110 0 0126899999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++|+.+.. ...+...+... .+.+++||||||+.+... .|+.|+++|+...+
T Consensus 67 ~~~~~~~~~~--------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~ 119 (324)
T 1hqc_A 67 RVTSGPAIEK--------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVM 119 (324)
T ss_dssp EEECTTTCCS--------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEE
T ss_pred EEEeccccCC--------hHHHHHHHHHh-----ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhh
Confidence 9999987642 12233333321 146789999999999877 89999999985544
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.+.. +.. .....+.....++++|++++..+
T Consensus 120 ~~v~--~~~-~~~~~~~~~~~~~~~i~~t~~~~----------------------------------------------- 149 (324)
T 1hqc_A 120 DIVI--GQG-PAARTIRLELPRFTLIGATTRPG----------------------------------------------- 149 (324)
T ss_dssp EECC--SSS-SSCCCEEEECCCCEEEEEESCCS-----------------------------------------------
T ss_pred HHhc--ccc-ccccccccCCCCEEEEEeCCCcc-----------------------------------------------
Confidence 3211 100 11122334445677888766211
Q ss_pred HhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005663 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 i~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~i 598 (684)
.+.++|++|++.++.+.+++.+++.+++...+ ... .+.+++++++.|++++ +++.|.++++
T Consensus 150 ---~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~-----------~~~--~~~~~~~~~~~l~~~~---~G~~r~l~~~ 210 (324)
T 1hqc_A 150 ---LITAPLLSRFGIVEHLEYYTPEELAQGVMRDA-----------RLL--GVRITEEAALEIGRRS---RGTMRVAKRL 210 (324)
T ss_dssp ---SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHH-----------HTT--TCCCCHHHHHHHHHHS---CSCHHHHHHH
T ss_pred ---cCCHHHHhcccEEEecCCCCHHHHHHHHHHHH-----------Hhc--CCCCCHHHHHHHHHHc---cCCHHHHHHH
Confidence 35688999998899999999999888776521 111 3568999999999972 5667999998
Q ss_pred HHHHHH
Q 005663 599 LENILM 604 (684)
Q Consensus 599 Ie~~l~ 604 (684)
++++..
T Consensus 211 l~~~~~ 216 (324)
T 1hqc_A 211 FRRVRD 216 (324)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 887653
No 38
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.71 E-value=6.6e-17 Score=181.07 Aligned_cols=220 Identities=20% Similarity=0.300 Sum_probs=156.2
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.|+|++.+++.|.+.+....+. .+.... . .++.++||+||||||||++|+++|+.++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g------~---------------~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIG------V---------------KPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHT------C---------------CCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcC------C---------------CCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 4899999999999988633221 111110 0 1237899999999999999999999999
Q ss_pred CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhc
Q 005663 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++|+++. ..|+|+. ...+..+|..+. ...++||||||||.+...+... .......+|+.||++|++
T Consensus 264 ~~fv~vn~~~l~-~~~~g~~-~~~~~~~f~~A~----~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 264 AFFFLINGPEIM-SKLAGES-ESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDG 334 (489)
T ss_dssp SEEEEEEHHHHH-TSCTTHH-HHHHHHHHHHHH----HTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEchHhh-hhhcchh-HHHHHHHHHHHH----hcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhc
Confidence 999999999998 6688877 566777776653 2457899999999998864321 122234699999999994
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKS 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.. ...++++|+++|..+
T Consensus 335 ~~-------------------~~~~v~vIaaTn~~~-------------------------------------------- 351 (489)
T 3hu3_A 335 LK-------------------QRAHVIVMAATNRPN-------------------------------------------- 351 (489)
T ss_dssp SC-------------------TTSCEEEEEEESCGG--------------------------------------------
T ss_pred cc-------------------cCCceEEEEecCCcc--------------------------------------------
Confidence 21 123477777776321
Q ss_pred hhHHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChH
Q 005663 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dli~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR 593 (684)
.+.|.++. ||+.++.+..++.++..+|+...+ . ...+. .+..++.++. ...++..+
T Consensus 352 ------~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~-----------~--~~~l~-~~~~l~~la~--~t~g~s~~ 409 (489)
T 3hu3_A 352 ------SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT-----------K--NMKLA-DDVDLEQVAN--ETHGHVGA 409 (489)
T ss_dssp ------GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT-----------T--TSCBC-TTCCHHHHHH--TCTTCCHH
T ss_pred ------ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH-----------h--cCCCc-chhhHHHHHH--HccCCcHH
Confidence 13356665 999999999999999999987521 1 11111 2223566777 45667789
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 005663 594 GLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~~~ 612 (684)
.|+.+++++...++.+...
T Consensus 410 dL~~L~~~A~~~a~r~~~~ 428 (489)
T 3hu3_A 410 DLAALCSEAALQAIRKKMD 428 (489)
T ss_dssp HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999998888776543
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=1.4e-16 Score=169.21 Aligned_cols=257 Identities=17% Similarity=0.251 Sum_probs=146.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
++|++.+++.+...+. .+..+ ..++.++||+||||||||++|+++|+.++.
T Consensus 46 ivG~~~~~~~l~~l~~----~~~~~-----------------------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 98 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLE----MIREG-----------------------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDT 98 (368)
T ss_dssp EESCHHHHHHHHHHHH----HHHTT-----------------------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSC
T ss_pred ccChHHHHHHHHHHHH----HHHcC-----------------------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccC
Confidence 7999999998776553 10000 011269999999999999999999999964
Q ss_pred CEEEEeccccccCCccccch------------------------------------------------HHHHHHHHhccc
Q 005663 357 PFVIADATTLTQAGYVGEDV------------------------------------------------ESILYKLLTVSD 388 (684)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~------------------------------------------------~~~l~~l~~~a~ 388 (684)
+|+.+++..+... +.+... ...++..+..+.
T Consensus 99 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 177 (368)
T 3uk6_A 99 PFTAIAGSEIFSL-EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 177 (368)
T ss_dssp CEEEEEGGGGSCS-SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHH
T ss_pred Ccccccchhhhhc-ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHH
Confidence 8999998764421 111110 111222222111
Q ss_pred chHHh-----hcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeec-cEE
Q 005663 389 YNVAA-----AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTK-DIL 462 (684)
Q Consensus 389 ~~v~~-----a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~Idts-Nii 462 (684)
..... ..++||||||||.+... .++.|++.++... ...+.+.+. .+.
T Consensus 178 ~~~~~~g~~~~~~~vl~IDEi~~l~~~--------------~~~~L~~~le~~~-------------~~~~ii~t~~~~~ 230 (368)
T 3uk6_A 178 AEWREEGKAEIIPGVLFIDEVHMLDIE--------------SFSFLNRALESDM-------------APVLIMATNRGIT 230 (368)
T ss_dssp HHHHHHTC---CBCEEEEESGGGSBHH--------------HHHHHHHHTTCTT-------------CCEEEEEESCSEE
T ss_pred HHhhhhccccccCceEEEhhccccChH--------------HHHHHHHHhhCcC-------------CCeeeeeccccee
Confidence 10000 11579999999999877 9999999998311 111112222 122
Q ss_pred EEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCH
Q 005663 463 FICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTE 542 (684)
Q Consensus 463 fI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~ 542 (684)
+|.+++.. ....+.|.|++|+.. +.|++++.
T Consensus 231 ~i~~t~~~------------------------------------------------~~~~l~~~l~sR~~~-i~~~~~~~ 261 (368)
T 3uk6_A 231 RIRGTSYQ------------------------------------------------SPHGIPIDLLDRLLI-VSTTPYSE 261 (368)
T ss_dssp ECBTSSCE------------------------------------------------EETTCCHHHHTTEEE-EEECCCCH
T ss_pred eeeccCCC------------------------------------------------CcccCCHHHHhhccE-EEecCCCH
Confidence 22221100 001366899999986 79999999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCCcccE
Q 005663 543 NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDA 622 (684)
Q Consensus 543 eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~ 622 (684)
+++.+|+...+. .. .+.+++++++.|++.++ +++.|.+.+++++++..+..+-.
T Consensus 262 ~e~~~il~~~~~-----------~~--~~~~~~~~l~~l~~~~~--~G~~r~~~~ll~~a~~~A~~~~~----------- 315 (368)
T 3uk6_A 262 KDTKQILRIRCE-----------EE--DVEMSEDAYTVLTRIGL--ETSLRYAIQLITAASLVCRKRKG----------- 315 (368)
T ss_dssp HHHHHHHHHHHH-----------HT--TCCBCHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhCC-----------
Confidence 999999976321 12 45699999999999653 36789999999998877654311
Q ss_pred EEechhccCcccCCCcceEEcCCChHHHHHHHhhhhhhhhccccCCCC
Q 005663 623 VVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKDLETNVAGADGE 670 (684)
Q Consensus 623 v~vdee~v~~~~~~~~~~i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~ 670 (684)
..|+.++|..... .+.+......++.+.+++.+......+++|
T Consensus 316 ~~It~~~v~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (368)
T 3uk6_A 316 TEVQVDDIKRVYS-----LFLDESRSTQYMKEYQDAFLFNELKGETMD 358 (368)
T ss_dssp SSBCHHHHHHHHH-----HSBCHHHHHHHHC-----------------
T ss_pred CCCCHHHHHHHHH-----HhcCHHHHHHHHHHhhhhhhhhcCCccccc
Confidence 1234444443221 111223345666666666664444444443
No 40
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.70 E-value=3.4e-16 Score=175.63 Aligned_cols=218 Identities=26% Similarity=0.310 Sum_probs=146.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+|++++|+.+...+.. +.. .. . ....+..++ .++||+||||||||+||++||..++.+
T Consensus 32 dv~G~~~~k~~l~~lv~~-l~~----~~---~-----------~~~lg~~ip-~GvLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEF-LKN----PS---R-----------FHEMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHC----GG---G-----------TTTTSCCCC-SEEEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred HcCCcHHHHHHHHHHHHH-hhc----hh---h-----------hhhccCCCC-ceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 379999999999988752 221 00 0 011112222 569999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..++|.. ...++.+|+.+.. ..++|+||||||.+...+.....+.+...+...+.||..|+|..
T Consensus 92 ~i~i~g~~~~-~~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 92 FITASGSDFV-EMFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp EEEEEGGGGT-SSCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred EEEEehhHHH-HhhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 9999999987 4577765 5667777776532 35689999999999876543211223334457788888888422
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
. .+.+++|+++|..+
T Consensus 166 ~-------------------~~~viviAatn~p~---------------------------------------------- 180 (499)
T 2dhr_A 166 K-------------------DTAIVVMAATNRPD---------------------------------------------- 180 (499)
T ss_dssp S-------------------SCCCEEEECCSCGG----------------------------------------------
T ss_pred c-------------------CccEEEEEecCChh----------------------------------------------
Confidence 1 12356666665221
Q ss_pred HHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHH-HHHHHHhcCCCCCChHH
Q 005663 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 li~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA-l~~La~~a~~~~~GAR~ 594 (684)
.+.|.++. ||+.++.++.++.++..+|++..+ . .+.+++++ +..|+.. + .++..|+
T Consensus 181 ----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~-------------~--~~~l~~dv~l~~lA~~-t-~G~~gad 239 (499)
T 2dhr_A 181 ----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAKR-T-PGFVGAD 239 (499)
T ss_dssp ----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT-------------S--SSCCCCSSTTHHHHTT-S-CSCCHHH
T ss_pred ----hcCcccccccccceEEecCCCCHHHHHHHHHHHH-------------h--cCCCChHHHHHHHHHh-c-CCCCHHH
Confidence 13455654 899999999999999999886421 1 22344443 5566653 2 2333499
Q ss_pred HHHHHHHHHHHHH
Q 005663 595 LRSLLENILMDAM 607 (684)
Q Consensus 595 Lr~iIe~~l~~al 607 (684)
|+++++++...+.
T Consensus 240 L~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 240 LENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877664
No 41
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.69 E-value=4.2e-17 Score=170.57 Aligned_cols=159 Identities=15% Similarity=0.215 Sum_probs=102.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccch
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~ 409 (684)
|.++||+||||||||++|+++|+.++.+|+.++++++. ..|+|.. +..+...+..+........++||||||||++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 37899999999999999999999999999999999987 6788887 667777776653333345789999999999988
Q ss_pred hhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCc
Q 005663 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~ 489 (684)
.+.. ..........+++.|+++||+..... ..+........++++|+|+|..+
T Consensus 114 ~~~~-~~~~~~~~~~v~~~Ll~~ld~~~~~~--------~~~~~~~~~~~~v~vI~ttN~~~------------------ 166 (293)
T 3t15_A 114 RMGG-TTQYTVNNQMVNATLMNIADNPTNVQ--------LPGMYNKQENARVPIIVTGNDFS------------------ 166 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCC------------------
T ss_pred CCCC-CccccchHHHHHHHHHHHhccccccc--------cccccccccCCCcEEEEecCCcc------------------
Confidence 5332 12223344568999999999432110 00000123456788898887321
Q ss_pred ccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhh--cccceEEEecccCHHHHHHHHhc
Q 005663 490 PVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 490 ~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
.+.|+|+ +||+.++.+ | +.++..+|++.
T Consensus 167 --------------------------------~ld~al~R~~R~d~~i~~-P-~~~~r~~Il~~ 196 (293)
T 3t15_A 167 --------------------------------TLYAPLIRDGRMEKFYWA-P-TREDRIGVCTG 196 (293)
T ss_dssp --------------------------------C--CHHHHHHHEEEEEEC-C-CHHHHHHHHHH
T ss_pred --------------------------------cCCHHHhCCCCCceeEeC-c-CHHHHHHHHHH
Confidence 2346666 699987764 3 89999999874
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.69 E-value=1.7e-16 Score=175.95 Aligned_cols=191 Identities=27% Similarity=0.353 Sum_probs=133.0
Q ss_pred ccChHHHH---HHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 279 VIGQERAK---KVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 279 ViGQd~aK---~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
++||++++ +.|...+... ...++||+||||||||++|++|++.++
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~--------------------------------~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAG--------------------------------HLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHT--------------------------------CCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred hCCcHHHHhchHHHHHHHHcC--------------------------------CCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 79999999 7777776410 015899999999999999999999999
Q ss_pred CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhc
Q 005663 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.+++.... ...++..+..+........++||||||||.+... .|+.||+.||.
T Consensus 76 ~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~ 132 (447)
T 3pvs_A 76 ADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED 132 (447)
T ss_dssp CEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT
T ss_pred CCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc
Confidence 999999875432 1233444433332223456789999999999876 89999999992
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKS 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
. .+++|++++...
T Consensus 133 ~-----------------------~v~lI~att~n~-------------------------------------------- 145 (447)
T 3pvs_A 133 G-----------------------TITFIGATTENP-------------------------------------------- 145 (447)
T ss_dssp T-----------------------SCEEEEEESSCG--------------------------------------------
T ss_pred C-----------------------ceEEEecCCCCc--------------------------------------------
Confidence 1 144554443100
Q ss_pred hhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHH
Q 005663 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 516 ~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~L 595 (684)
...+.+.|++|+. ++.|.+++.+++..++...+....+. + .+..+.+++++++.|++. +++++|.+
T Consensus 146 ----~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~----~--~~~~~~i~~~al~~L~~~---~~Gd~R~l 211 (447)
T 3pvs_A 146 ----SFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRG----Y--GGQDIVLPDETRRAIAEL---VNGDARRA 211 (447)
T ss_dssp ----GGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTS----S--TTSSEECCHHHHHHHHHH---HCSCHHHH
T ss_pred ----ccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhh----h--ccccCcCCHHHHHHHHHH---CCCCHHHH
Confidence 0136689999987 67799999999999988643221000 0 113678999999999997 56789999
Q ss_pred HHHHHHHHHH
Q 005663 596 RSLLENILMD 605 (684)
Q Consensus 596 r~iIe~~l~~ 605 (684)
.++++.++..
T Consensus 212 ln~Le~a~~~ 221 (447)
T 3pvs_A 212 LNTLEMMADM 221 (447)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=2e-16 Score=162.35 Aligned_cols=176 Identities=23% Similarity=0.294 Sum_probs=117.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchH---HHHHHHHhcccchHHhhcCCEEEEccccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVE---SILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~---~~l~~l~~~a~~~v~~a~~gVLfIDEIdk 406 (684)
+.++||+||||||||++|+++|+.++.+|+.+++++. ++|.... ..+..++..+ ....++||||||||.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDA----YKSQLSCVVVDDIER 135 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHH----HTSSEEEEEECCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHH----HhcCCcEEEEEChhh
Confidence 3799999999999999999999999999999998753 3444322 3344444432 123578999999999
Q ss_pred cchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCC
Q 005663 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lG 486 (684)
+...+.. .......+++.|+..+++.. -...++++|+|+|..+ .
T Consensus 136 l~~~~~~----~~~~~~~~l~~L~~~~~~~~------------------~~~~~~~ii~ttn~~~---~----------- 179 (272)
T 1d2n_A 136 LLDYVPI----GPRFSNLVLQALLVLLKKAP------------------PQGRKLLIIGTTSRKD---V----------- 179 (272)
T ss_dssp HTTCBTT----TTBCCHHHHHHHHHHTTCCC------------------STTCEEEEEEEESCHH---H-----------
T ss_pred hhccCCC----ChhHHHHHHHHHHHHhcCcc------------------CCCCCEEEEEecCChh---h-----------
Confidence 8654211 11122346777777776211 0123466777765211 0
Q ss_pred cCcccccccccCCCchhhhhhhhhhhccchhHHhcCCCh-hhhcccceEEEecccCH-HHHHHHHhchHHHHHHHHHHHH
Q 005663 487 FGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIP-EFVGRFPVLVSLLALTE-NQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 487 f~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~P-eLl~R~d~iI~f~pLs~-eel~~Il~~~l~~L~kqy~~~~ 564 (684)
+ .+ .+.+||+..+.+++++. +++.+++..
T Consensus 180 -----------------------l-------------~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~------------- 210 (272)
T 1d2n_A 180 -----------------------L-------------QEMEMLNAFSTTIHVPNIATGEQLLEALEL------------- 210 (272)
T ss_dssp -----------------------H-------------HHTTCTTTSSEEEECCCEEEHHHHHHHHHH-------------
T ss_pred -----------------------c-------------chhhhhcccceEEcCCCccHHHHHHHHHHh-------------
Confidence 0 11 45679999999999988 776666643
Q ss_pred hhCCceeecCHHHHHHHHHhc--CCCCCChHHHHHHHHHHH
Q 005663 565 QMNGVKLHFTENALRLIAKKA--ISKNTGARGLRSLLENIL 603 (684)
Q Consensus 565 ~~~gv~l~iteeAl~~La~~a--~~~~~GAR~Lr~iIe~~l 603 (684)
...++++++..|++.. |.|..++|.+.++++.+.
T Consensus 211 -----~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 211 -----LGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp -----HTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred -----cCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 1246889999998763 455668999999988754
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.65 E-value=1.9e-15 Score=158.42 Aligned_cols=191 Identities=18% Similarity=0.235 Sum_probs=135.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++|++++++.+...+... ..+..+|++||||||||++|+++++.++.++
T Consensus 28 ivg~~~~~~~l~~~l~~~-------------------------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~ 76 (324)
T 3u61_B 28 CILPAFDKETFKSITSKG-------------------------------KIPHIILHSPSPGTGKTTVAKALCHDVNADM 76 (324)
T ss_dssp SCCCHHHHHHHHHHHHTT-------------------------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEE
T ss_pred HhCcHHHHHHHHHHHHcC-------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCE
Confidence 699999999998887400 0125678889999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccc-hhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~-~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
+.+++++.. .......+.......+. ...+.||||||+|.+. .. .++.|++.||..
T Consensus 77 ~~i~~~~~~-----~~~i~~~~~~~~~~~~~---~~~~~vliiDEi~~l~~~~--------------~~~~L~~~le~~- 133 (324)
T 3u61_B 77 MFVNGSDCK-----IDFVRGPLTNFASAASF---DGRQKVIVIDEFDRSGLAE--------------SQRHLRSFMEAY- 133 (324)
T ss_dssp EEEETTTCC-----HHHHHTHHHHHHHBCCC---SSCEEEEEEESCCCGGGHH--------------HHHHHHHHHHHH-
T ss_pred EEEcccccC-----HHHHHHHHHHHHhhccc---CCCCeEEEEECCcccCcHH--------------HHHHHHHHHHhC-
Confidence 999987642 11112222222222111 1256899999999998 65 899999999821
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
..++.||+++|...
T Consensus 134 --------------------~~~~~iI~~~n~~~---------------------------------------------- 147 (324)
T 3u61_B 134 --------------------SSNCSIIITANNID---------------------------------------------- 147 (324)
T ss_dssp --------------------GGGCEEEEEESSGG----------------------------------------------
T ss_pred --------------------CCCcEEEEEeCCcc----------------------------------------------
Confidence 13456676665210
Q ss_pred HHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCH-HHHHHHHHhcCCCCCChHHHH
Q 005663 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 518 li~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ite-eAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.+.+++|+. ++.|.+++.+++.+|+...+..+.+. +... .+.+++ ++++.|++. .++++|.+.
T Consensus 148 ----~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~----~~~~--~~~~~~~~~~~~l~~~---~~gd~R~a~ 213 (324)
T 3u61_B 148 ----GIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEI----CKHE--GIAIADMKVVAALVKK---NFPDFRKTI 213 (324)
T ss_dssp ----GSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHH----HHHH--TCCBSCHHHHHHHHHH---TCSCTTHHH
T ss_pred ----ccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHH----HHHc--CCCCCcHHHHHHHHHh---CCCCHHHHH
Confidence 25688899996 79999999999998887755444333 2333 456888 999999996 456679988
Q ss_pred HHHHHHH
Q 005663 597 SLLENIL 603 (684)
Q Consensus 597 ~iIe~~l 603 (684)
+.++.+.
T Consensus 214 ~~L~~~~ 220 (324)
T 3u61_B 214 GELDSYS 220 (324)
T ss_dssp HHHHHHG
T ss_pred HHHHHHh
Confidence 8888765
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=7.6e-16 Score=162.17 Aligned_cols=230 Identities=23% Similarity=0.260 Sum_probs=148.7
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005663 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAk 348 (684)
..+...+.+.|+||+++++.+..++.. ..++||+||||||||++|+
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~----------------------------------~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICT----------------------------------GGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHH----------------------------------TCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHc----------------------------------CCeEEEECCCCCcHHHHHH
Confidence 347777888899999999988877740 1689999999999999999
Q ss_pred HHHHHhCCCEEEEeccc-cccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHH
Q 005663 349 TLARYVNVPFVIADATT-LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 349 aLA~~l~~pfv~v~~s~-l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~ 427 (684)
++|+.++.+++.++++. .....++|..........+...++. -..+|||||||+++... +++
T Consensus 65 ~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~---l~~~vl~iDEi~~~~~~--------------~~~ 127 (331)
T 2r44_A 65 TLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGP---VFSNFILADEVNRSPAK--------------VQS 127 (331)
T ss_dssp HHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECT---TCSSEEEEETGGGSCHH--------------HHH
T ss_pred HHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCc---ccccEEEEEccccCCHH--------------HHH
Confidence 99999999999999852 2212222221100000000000110 02479999999999877 999
Q ss_pred HHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhh
Q 005663 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~ 507 (684)
.|++.|+...+.+ .|.. +. ...++++|+|.|..+. .|
T Consensus 128 ~Ll~~l~~~~~~~--~g~~-------~~-~~~~~~viat~np~~~------------~~--------------------- 164 (331)
T 2r44_A 128 ALLECMQEKQVTI--GDTT-------YP-LDNPFLVLATQNPVEQ------------EG--------------------- 164 (331)
T ss_dssp HHHHHHHHSEEEE--TTEE-------EE-CCSSCEEEEEECTTCC------------SC---------------------
T ss_pred HHHHHHhcCceee--CCEE-------EE-CCCCEEEEEecCCCcc------------cC---------------------
Confidence 9999999655543 1211 11 1224666666552110 00
Q ss_pred hhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH-------------HHHHHHHHHhhCCceeecC
Q 005663 508 SLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA-------------LGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 508 ~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~-------------L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.++|++||+..+.+.+++.++..+|+...... -....++.. ..+.++
T Consensus 165 ------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~v~~~ 228 (331)
T 2r44_A 165 ------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI----NKVTIS 228 (331)
T ss_dssp ------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH----HTCBCC
T ss_pred ------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh----ccCCCC
Confidence 013679999999988999999999999998764321 011111111 156789
Q ss_pred HHHHHHHHHhcC-----------------CCCCChHHHHHHHHHHHHHHHh
Q 005663 575 ENALRLIAKKAI-----------------SKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 575 eeAl~~La~~a~-----------------~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
+++++++++... ..+.+.|.+.++++.+-..+..
T Consensus 229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l 279 (331)
T 2r44_A 229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF 279 (331)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH
Confidence 999999987431 1234689999988876555443
No 46
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=156.36 Aligned_cols=224 Identities=20% Similarity=0.263 Sum_probs=147.8
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|.|.+++|+.|.+.+..++.....-.. .++..+ .+++|+||||||||+||+++|..++.++
T Consensus 12 i~g~~~~~~~l~~~i~~~~~~~~~l~~------------------~~l~~~-~GvlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 12 IGALEDIREELTMAILAPVRNPDQFKA------------------LGLVTP-AGVLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp CCHHHHHHHHHHHHHTHHHHSHHHHHH------------------TTCCCC-SEEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHH------------------cCCCCC-CeEEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 799999999999988655553211110 011222 5699999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++.++. ..|.|+. +..+..+|+.+. ...++++|+||||.+...+.... .....++.+.++..|+|..-
T Consensus 73 i~i~g~~l~-~~~~~~~-~~~i~~vf~~a~----~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 73 ISVKGPELL-NMYVGES-ERAVRQVFQRAK----NSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp EEEETTTTC-SSTTHHH-HHHHHHHHHHHH----HTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCS
T ss_pred EEEEcHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccc
Confidence 999999886 4566765 566777776542 23578999999999876543211 11122378889999985321
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.+.+++++++|..+
T Consensus 144 -------------------~~~~i~ia~tn~p~----------------------------------------------- 157 (274)
T 2x8a_A 144 -------------------RQQVFIMAATNRPD----------------------------------------------- 157 (274)
T ss_dssp -------------------TTCEEEEEEESCGG-----------------------------------------------
T ss_pred -------------------cCCEEEEeecCChh-----------------------------------------------
Confidence 12245555544211
Q ss_pred HhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC-HHHHHHHHHhcCCCCCChHHH
Q 005663 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 i~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it-eeAl~~La~~a~~~~~GAR~L 595 (684)
-+.|+++. |||..|.++.++.++..+|++..+ + .+....++ +-.++.|+......++...+|
T Consensus 158 ---~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~-----------~-~~~~~~~~~~~~~~~la~~~~~~g~sgadl 222 (274)
T 2x8a_A 158 ---IIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT-----------K-NGTKPPLDADVNLEAIAGDLRCDCYTGADL 222 (274)
T ss_dssp ---GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT-----------T-TTBTTBBCTTCCHHHHHTCSGGGSCCHHHH
T ss_pred ---hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH-----------h-cccCCCCccccCHHHHHHhhccCCcCHHHH
Confidence 13467765 999999999999999999987521 1 11111121 223566666422346777899
Q ss_pred HHHHHHHHHHHHhcCC
Q 005663 596 RSLLENILMDAMYEIP 611 (684)
Q Consensus 596 r~iIe~~l~~al~e~~ 611 (684)
.++++++...++.+..
T Consensus 223 ~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 223 SALVREASICALRQEM 238 (274)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988876543
No 47
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=8.5e-17 Score=184.19 Aligned_cols=258 Identities=19% Similarity=0.186 Sum_probs=153.5
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005663 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAk 348 (684)
..+.+.|...|+||+.+|+.+..++.....+ .. .+ .......++||+||||||||++|+
T Consensus 287 ~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~---------~~-----------~~-~~~r~~~~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 287 DRIISSIAPSIYGHWELKEALALALFGGVPK---------VL-----------ED-TRIRGDIHILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp GTHHHHTSSTTSCCHHHHHHHTTTTTCCCCE---------ET-----------TT-TEECCSCCEEEEESSCCTHHHHHH
T ss_pred HHHHHhhcchhcChHHHHHHHHHHHhCCCcc---------cc-----------cC-CCcCCCcceEEECCCchHHHHHHH
Confidence 3477788888999999998876554311000 00 00 111122599999999999999999
Q ss_pred HHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHH
Q 005663 349 TLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 349 aLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~ 428 (684)
++|+.+...++.... .....++.+..........+...++.+..+.+||+||||||++.+. +|++
T Consensus 346 ~la~~~~r~~~~~~~-~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~--------------~q~~ 410 (595)
T 3f9v_A 346 FISRVAPRAVYTTGK-GSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE--------------DRVA 410 (595)
T ss_dssp SSSTTCSCEECCCTT-CSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------HHHH
T ss_pred HHHHhCCCceecCCC-ccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------Hhhh
Confidence 999998766544221 1111333333221111112223345566778899999999999887 9999
Q ss_pred HHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhh
Q 005663 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ 508 (684)
|+++||.+.+.+...|... . ...++.+|+|+|... +.++... .
T Consensus 411 Ll~~le~~~i~i~~~g~~~-------~-~~~~~~vIaatNp~~-------G~~~~~~----------------------~ 453 (595)
T 3f9v_A 411 IHEAMEQQTVSIAKAGIVA-------K-LNARAAVIAAGNPKF-------GRYISER----------------------P 453 (595)
T ss_dssp HHHHHHSSSEEEESSSSEE-------E-ECCCCEEEEEECCTT-------CCSCTTS----------------------C
T ss_pred hHHHHhCCEEEEecCCcEE-------E-ecCceEEEEEcCCcC-------CccCccc----------------------C
Confidence 9999997666654333221 1 224567777777421 1110000 0
Q ss_pred hhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHH-------------HHHHHHHHHHhhCCceeecCH
Q 005663 509 LMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN-------------ALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 509 ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~-------------~L~kqy~~~~~~~gv~l~ite 575 (684)
+.+ .-.+.++|++|||.++.+.++..++...|+...+. ...++|....+. .+...+++
T Consensus 454 ~~~--------ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ls~ 524 (595)
T 3f9v_A 454 VSD--------NINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK-YVTPKITS 524 (595)
T ss_dssp SCT--------TTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH-HHCCCCCC
T ss_pred chh--------ccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH-hCCCCCCH
Confidence 000 11478999999998777777666554444443221 112333322211 12347889
Q ss_pred HHHHHHHHhcC------------CCCCChHHHHHHHHHHHHHHHh
Q 005663 576 NALRLIAKKAI------------SKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 576 eAl~~La~~a~------------~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
++.+.|.+... .++.++|.|.++++-.-..|..
T Consensus 525 ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l 569 (595)
T 3f9v_A 525 EAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKM 569 (595)
T ss_dssp CTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHH
Confidence 99999988622 3577899999999866555543
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.62 E-value=1.3e-14 Score=140.43 Aligned_cols=187 Identities=22% Similarity=0.296 Sum_probs=129.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|++++++.+...+... ...+++|+||||||||++|+++++.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3689999999998887410 01469999999999999999999876
Q ss_pred --CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHH
Q 005663 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 355 --~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
..+++.++++..... ......+........ .....+.+|+|||+|.+... .++.|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~ 125 (226)
T 2chg_A 66 NWRDNFIEMNASDERGI----DVVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (226)
T ss_dssp GGGGGEEEEETTCTTCH----HHHHHHHHHHHTSCC--STTCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred ccccceEEeccccccCh----HHHHHHHHHHhcccC--CCccCceEEEEeChhhcCHH--------------HHHHHHHH
Confidence 456888888654311 011122222222111 11246789999999999876 78899999
Q ss_pred HhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhh
Q 005663 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~ 512 (684)
++.. ..++.+|++++..
T Consensus 126 l~~~---------------------~~~~~~i~~~~~~------------------------------------------ 142 (226)
T 2chg_A 126 MEMY---------------------SKSCRFILSCNYV------------------------------------------ 142 (226)
T ss_dssp HHHT---------------------TTTEEEEEEESCG------------------------------------------
T ss_pred HHhc---------------------CCCCeEEEEeCCh------------------------------------------
Confidence 9821 1234556555421
Q ss_pred ccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCCh
Q 005663 513 VKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GA 592 (684)
..+.+.+.+|+. ++.|++++.+++.+++...+.. . .+.+++++++.|++.. +++.
T Consensus 143 --------~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~~~~~~~l~~~~---~g~~ 197 (226)
T 2chg_A 143 --------SRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK-----------E--GVKITEDGLEALIYIS---GGDF 197 (226)
T ss_dssp --------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-----------H--TCCBCHHHHHHHHHHH---TTCH
T ss_pred --------hhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---CCCH
Confidence 024578888988 8999999999998888753211 1 3458999999999753 5678
Q ss_pred HHHHHHHHHHHH
Q 005663 593 RGLRSLLENILM 604 (684)
Q Consensus 593 R~Lr~iIe~~l~ 604 (684)
|.+.++++++..
T Consensus 198 r~l~~~l~~~~~ 209 (226)
T 2chg_A 198 RKAINALQGAAA 209 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 49
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.61 E-value=1.1e-15 Score=143.20 Aligned_cols=97 Identities=22% Similarity=0.290 Sum_probs=74.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|++.+++.+...+. + ++.. ..++||+||||||||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~----~----------~a~~----------------~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQ----Q----------LSET----------------DIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp --CCSSHHHHHHHHHHH----H----------HTTC----------------CSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CceeCCHHHHHHHHHHH----H----------HhCC----------------CCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 36899999999988874 1 1111 2689999999999999999999887
Q ss_pred CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+|+ ++|+.+... .. ... .++.+.+++|||||||.+... +|+.|+.+|+
T Consensus 52 ~~~~v-~~~~~~~~~----~~----~~~-------~~~~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~ 101 (145)
T 3n70_A 52 QGEFV-YRELTPDNA----PQ----LND-------FIALAQGGTLVLSHPEHLTRE--------------QQYHLVQLQS 101 (145)
T ss_dssp TSCCE-EEECCTTTS----SC----HHH-------HHHHHTTSCEEEECGGGSCHH--------------HHHHHHHHHH
T ss_pred CCCEE-EECCCCCcc----hh----hhc-------HHHHcCCcEEEEcChHHCCHH--------------HHHHHHHHHh
Confidence 77999 999887632 11 112 233456799999999999887 9999999996
No 50
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.61 E-value=1.4e-14 Score=146.86 Aligned_cols=219 Identities=26% Similarity=0.309 Sum_probs=138.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
|+|+++++..+...+.. |.....- . +.++..+ .+++|+||||||||+++++++..++.++
T Consensus 18 i~g~~~~~~~l~~l~~~-~~~~~~~--~----------------~~~~~~~-~g~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEF-LKNPSRF--H----------------EMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp CCSCHHHHHHHHHHHHH-HHCHHHH--H----------------HTTCCCC-SEEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hCCcHHHHHHHHHHHHH-HHCHHHH--H----------------HcCCCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 79999999999887642 2211000 0 0011122 4599999999999999999999999999
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++.++.. .+.+.. ...+..+++.+.. ..++++++||||.+...+.......+......++.|+..|+|..-
T Consensus 78 i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 78 ITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp EEEEHHHHHH-SCTTHH-HHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred EEeeHHHHHH-HHhhHH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 9999987752 345544 3455566655321 246899999999987654321111222234577888888884210
Q ss_pred eecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhH
Q 005663 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.+.++++++++..+
T Consensus 152 -------------------~~~~i~~a~t~~p~----------------------------------------------- 165 (254)
T 1ixz_A 152 -------------------DTAIVVMAATNRPD----------------------------------------------- 165 (254)
T ss_dssp -------------------TCCEEEEEEESCGG-----------------------------------------------
T ss_pred -------------------CCCEEEEEccCCch-----------------------------------------------
Confidence 11244454443111
Q ss_pred HhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHH-HHHHHHhcCCCCCChHHH
Q 005663 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 i~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA-l~~La~~a~~~~~GAR~L 595 (684)
.+.|.++. ||+..+.++.++.++..+|++... . .+.+++++ +..|++. ..++.+|+|
T Consensus 166 ---~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-------------~--~~~~~~~~~~~~la~~--~~G~~~~dl 225 (254)
T 1ixz_A 166 ---ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAKR--TPGFVGADL 225 (254)
T ss_dssp ---GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH-------------T--TSCBCTTCCHHHHHHT--CTTCCHHHH
T ss_pred ---hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH-------------c--CCCCCcccCHHHHHHH--cCCCCHHHH
Confidence 13466665 899999999999999999886421 1 12344333 6777774 334446999
Q ss_pred HHHHHHHHHHHHhc
Q 005663 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
+++++++...+..+
T Consensus 226 ~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 226 ENLLNEAALLAARE 239 (254)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988877643
No 51
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.61 E-value=1.2e-14 Score=149.95 Aligned_cols=219 Identities=25% Similarity=0.301 Sum_probs=134.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+|++++++.+...+. .|.....- .+..+..+ .+++|+||||||||+++++++..++.+
T Consensus 41 ~i~g~~~~~~~l~~l~~-~~~~~~~l------------------~~~~~~~~-~gvll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVE-FLKNPSRF------------------HEMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp GSSSCHHHHHHHHHHHH-HHHCHHHH------------------HHTTCCCC-CEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCChHHHHHHHHHHHH-HHHCHHHH------------------HHcCCCCC-CeEEEECCCcChHHHHHHHHHHHcCCC
Confidence 37999999999988764 22210000 00011122 459999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
++.+++.++.. .+.+.. ...+..+++.+. ...++++++||||.+...+...............+.++..|+|..
T Consensus 101 ~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~----~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 101 FITASGSDFVE-MFVGVG-AARVRDLFETAK----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp EEEEEHHHHHH-STTTHH-HHHHHHHHHHHH----TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred EEEecHHHHHH-HHhhHH-HHHHHHHHHHHH----hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 99999987753 344443 344555555432 124689999999998765332111111122345566777776321
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
. -+.++++++++..+
T Consensus 175 ~-------------------~~~~i~~a~t~~p~---------------------------------------------- 189 (278)
T 1iy2_A 175 K-------------------DTAIVVMAATNRPD---------------------------------------------- 189 (278)
T ss_dssp T-------------------TCCEEEEEEESCTT----------------------------------------------
T ss_pred C-------------------CCCEEEEEecCCch----------------------------------------------
Confidence 0 11244554443211
Q ss_pred HHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHH-HHHHHHhcCCCCCChHH
Q 005663 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 li~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeA-l~~La~~a~~~~~GAR~ 594 (684)
.+.|.++. ||+.++.++.++.++..+|+.... . .+.+++++ +..++.. + .++..|+
T Consensus 190 ----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-----------~----~~~~~~~~~~~~la~~-~-~G~~~~d 248 (278)
T 1iy2_A 190 ----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-----------R----GKPLAEDVDLALLAKR-T-PGFVGAD 248 (278)
T ss_dssp ----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-----------T----TSCBCTTCCHHHHHHT-C-TTCCHHH
T ss_pred ----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH-----------c----cCCCCcccCHHHHHHH-c-CCCCHHH
Confidence 13456654 899999999999999999886421 1 12344433 6667764 2 3334599
Q ss_pred HHHHHHHHHHHHHh
Q 005663 595 LRSLLENILMDAMY 608 (684)
Q Consensus 595 Lr~iIe~~l~~al~ 608 (684)
|+++++++...+..
T Consensus 249 l~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 249 LENLLNEAALLAAR 262 (278)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877654
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.60 E-value=1.6e-14 Score=159.90 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=77.4
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC-
Q 005663 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN- 355 (684)
Q Consensus 277 ~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~- 355 (684)
+.|+||+++++.+...+.. .+ .+ ..++.++||+||||||||++|+++|+.++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~-~~---~~-----------------------~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVEL-IK---SK-----------------------KMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTEESCHHHHHHHHHHHHH-HH---TT-----------------------CCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhccCHHHHHHHHHHHHHH-HH---hC-----------------------CCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 4589999999998877641 11 00 01247999999999999999999999998
Q ss_pred -CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhh
Q 005663 356 -VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 356 -~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r 411 (684)
.+|+.++++++. ..|+|+. +. +...|..+.. .....++||||||||.+...+
T Consensus 90 ~~~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r 142 (456)
T 2c9o_A 90 KVPFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCE 142 (456)
T ss_dssp TSCEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC-
T ss_pred CceEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhccccc
Confidence 899999999987 6788876 44 7777766521 122456788888888777554
No 53
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.60 E-value=3.1e-17 Score=167.35 Aligned_cols=216 Identities=25% Similarity=0.324 Sum_probs=132.1
Q ss_pred ccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 279 VIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
++|++.+++.+...+.. +.. .+... +. ..+.++||+||||||||++|+++|+.++.
T Consensus 13 i~G~~~~~~~l~~~~~~-~~~~~~~~~~------~~---------------~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDF-LKYPERYANL------GA---------------KIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp SSSCTTTHHHHHHHHHH-HHCHHHHHHH------SC---------------CCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred hCCcHHHHHHHHHHHHH-HHChHHHHHC------CC---------------CCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 79999999999987742 111 11100 00 01267999999999999999999999999
Q ss_pred CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccc-cCCCCchHHHHHHHHHHHhc
Q 005663 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN-ISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~-~~~d~~~e~vq~~LL~~LEg 435 (684)
+|+.++++++. ..+.|.. ...+..++..+. ...++||||||+|.+...+...+ ...+.....+++.|+..|++
T Consensus 71 ~~~~v~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 71 PFFSMGGSSFI-EMFVGLG-ASRVRDLFETAK----KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp CCCCCCSCTTT-TSCSSSC-SSSSSTTHHHHH----HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred CEEEechHHHH-HhhcchH-HHHHHHHHHHHH----hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 99999999886 3455654 222223333221 13568999999999987643211 11122222356777777763
Q ss_pred ceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccc
Q 005663 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKS 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.. -...++++|+++|..+
T Consensus 145 ~~------------------~~~~~v~vi~ttn~~~-------------------------------------------- 162 (268)
T 2r62_A 145 FG------------------SENAPVIVLAATNRPE-------------------------------------------- 162 (268)
T ss_dssp SS------------------CSCSCCEEEECBSCCT--------------------------------------------
T ss_pred cc------------------cCCCCEEEEEecCCch--------------------------------------------
Confidence 11 0123467777776321
Q ss_pred hhHHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChH
Q 005663 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dli~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR 593 (684)
.+.+.++. ||+..+.++.++.++..+|+...+. .. .+. ++..++.|++. ..++..|
T Consensus 163 ------~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~-----------~~--~~~-~~~~~~~la~~--~~g~~g~ 220 (268)
T 2r62_A 163 ------ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK-----------GV--KLA-NDVNLQEVAKL--TAGLAGA 220 (268)
T ss_dssp ------TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS-----------SS--CCC-SSCCTTTTTSS--SCSSCHH
T ss_pred ------hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh-----------cC--CCC-CccCHHHHHHH--cCCCCHH
Confidence 13355555 8988899999999999988864211 11 111 22224455653 3344558
Q ss_pred HHHHHHHHHHHHH
Q 005663 594 GLRSLLENILMDA 606 (684)
Q Consensus 594 ~Lr~iIe~~l~~a 606 (684)
+|+++++++...+
T Consensus 221 dl~~l~~~a~~~a 233 (268)
T 2r62_A 221 DLANIINEAALLA 233 (268)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877644
No 54
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.57 E-value=3.7e-17 Score=193.15 Aligned_cols=224 Identities=21% Similarity=0.245 Sum_probs=151.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccc-cccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE-LEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
.++|++.+|+.|.+.+....++.. ...... .++.++||+||||||||++|+++|+.++.
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~--------------------~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPD--------------------KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCT--------------------TTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhHHHHHHhhhhchH--------------------HHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 478999999999887742111100 000111 13478999999999999999999999999
Q ss_pred CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcc
Q 005663 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.++++++. ..|+|+. +..+..+|+.+.. ..++||||||||.+...++......+....++++.||..|++.
T Consensus 538 ~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 538 NFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp CCCCCCCSSST-TCCTTTS-SHHHHHHHHHHHH----HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred CEEEEechHhh-hhhcCcc-HHHHHHHHHHHHh----cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 99999999987 6789987 5677777776542 4678999999999987754322111223446888899988842
Q ss_pred eeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccch
Q 005663 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
....++++|+|+|..+
T Consensus 612 -------------------~~~~~v~vI~tTN~~~--------------------------------------------- 627 (806)
T 1ypw_A 612 -------------------STKKNVFIIGATNRPD--------------------------------------------- 627 (806)
T ss_dssp -----------------------CCBCCCCCBSCG---------------------------------------------
T ss_pred -------------------cccCCeEEEEecCCcc---------------------------------------------
Confidence 1235677888877321
Q ss_pred hHHhcCCChhhhc--ccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHH
Q 005663 517 DLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 517 dli~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~ 594 (684)
.+.|+|+. ||+.+|.++.++.++..+|++..+... .+ ..+..++.|++. ..++..+.
T Consensus 628 -----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------------~~-~~~~~l~~la~~--t~g~sgad 686 (806)
T 1ypw_A 628 -----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-------------PV-AKDVDLEFLAKM--TNGFSGAD 686 (806)
T ss_dssp -----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------------------CCCCSCSCGG--GSSSCCHH
T ss_pred -----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC-------------CC-CcccCHHHHHHh--ccccCHHH
Confidence 13577776 999999999999999999998753221 00 001112333432 34555688
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 005663 595 LRSLLENILMDAMYEIPD 612 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~~ 612 (684)
|++++..+...++.+..+
T Consensus 687 i~~l~~~a~~~a~~~~~~ 704 (806)
T 1ypw_A 687 LTEICQRACKLAIRESIE 704 (806)
T ss_dssp HHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988888876543
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.57 E-value=1.5e-14 Score=151.89 Aligned_cols=172 Identities=15% Similarity=0.252 Sum_probs=115.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
.+++|+||||||||++|+++++.+ +.+++.+++.++.. .+.+.........+.. ....+++||||||+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHLKKGTINEFRN------MYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHHHHTCHHHHHH------HHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHHHcCcHHHHHH------HhcCCCEEEEcCcccc
Confidence 689999999999999999999988 88999999977641 1111110000011110 0124689999999998
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
...+ ..|+.|+.+++... + .+..+|++++..-
T Consensus 111 ~~~~------------~~~~~l~~~l~~~~-------------------~-~~~~iii~~~~~~---------------- 142 (324)
T 1l8q_A 111 SGKE------------RTQIEFFHIFNTLY-------------------L-LEKQIILASDRHP---------------- 142 (324)
T ss_dssp TTCH------------HHHHHHHHHHHHHH-------------------H-TTCEEEEEESSCG----------------
T ss_pred cCCh------------HHHHHHHHHHHHHH-------------------H-CCCeEEEEecCCh----------------
Confidence 7631 16778888876210 0 1112333333100
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
.++ ..+.+.|++|++ .++.+++ +.+++.+|+...+.
T Consensus 143 ----------------------------~~l--~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~----------- 180 (324)
T 1l8q_A 143 ----------------------------QKL--DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK----------- 180 (324)
T ss_dssp ----------------------------GGC--TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH-----------
T ss_pred ----------------------------HHH--HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH-----------
Confidence 000 135688999996 6899999 99999999876432
Q ss_pred hCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005663 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
.. .+.++++++++|+++. +++|+|.+++++++..
T Consensus 181 ~~--~~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 181 EF--NLELRKEVIDYLLENT----KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HT--TCCCCHHHHHHHHHHC----SSHHHHHHHHHHHHHH
T ss_pred hc--CCCCCHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 12 4579999999999974 6789999999988765
No 56
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.56 E-value=8.8e-14 Score=156.17 Aligned_cols=229 Identities=15% Similarity=0.195 Sum_probs=145.4
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005663 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAk 348 (684)
..+.+.|.+.|+|++++++.+..++. ...++||+||||||||++|+
T Consensus 14 ~~l~~~l~~~ivGq~~~i~~l~~al~----------------------------------~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 14 SRLSSSLEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHH----------------------------------HTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHh----------------------------------cCCeeEeecCchHHHHHHHH
Confidence 45788889999999999998887764 02799999999999999999
Q ss_pred HHHHHhC--CCEEEEeccccccCCccccchHHHH--HHHHh-cccchHHhhcCCEEEEccccccchhhcccccCCCCchH
Q 005663 349 TLARYVN--VPFVIADATTLTQAGYVGEDVESIL--YKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 349 aLA~~l~--~pfv~v~~s~l~~sgyvG~~~~~~l--~~l~~-~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e 423 (684)
++|+.++ .+|..+++.-.+...++|....... ...+. ...+.+ +.++|||||||+++.++
T Consensus 60 aLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~------------- 124 (500)
T 3nbx_X 60 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPA------------- 124 (500)
T ss_dssp HGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGGGCCHH-------------
T ss_pred HHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHhhhcHH-------------
Confidence 9999884 4666666643232333332111110 11121 111111 14679999999998877
Q ss_pred HHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005663 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~ 503 (684)
+|+.|+++|+.+.+.+ .|. . ......++|+|+|...
T Consensus 125 -~q~~LL~~lee~~v~i--~G~-------~--~~~~~~~iI~ATN~lp-------------------------------- 160 (500)
T 3nbx_X 125 -ILNTLLTAINERQFRN--GAH-------V--EKIPMRLLVAASNELP-------------------------------- 160 (500)
T ss_dssp -HHHHHHHHHHSSEEEC--SSS-------E--EECCCCEEEEEESSCC--------------------------------
T ss_pred -HHHHHHHHHHHHhccC--CCC-------c--CCcchhhhhhccccCC--------------------------------
Confidence 9999999999666553 121 1 1222223455554100
Q ss_pred hhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCH-HHHHHHHhchHH--------------HHHHHHHHHHhhCC
Q 005663 504 VVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN--------------ALGKQYRKMFQMNG 568 (684)
Q Consensus 504 ~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~-eel~~Il~~~l~--------------~L~kqy~~~~~~~g 568 (684)
+ ...+.+++++||...+.+++++. ++...|+..... .-...++....
T Consensus 161 ------------e---~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~--- 222 (500)
T 3nbx_X 161 ------------E---ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIG--- 222 (500)
T ss_dssp ------------C---TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHT---
T ss_pred ------------C---ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCC---
Confidence 0 01356889999988899998887 677888876421 11122222221
Q ss_pred ceeecCHHHHHHHHHhcC-------CCCCChHHHHHHHHHHHHHHHhc
Q 005663 569 VKLHFTENALRLIAKKAI-------SKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 569 v~l~iteeAl~~La~~a~-------~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
.+.+++++++++++..- ..+.+.|.+..++..+-..+..+
T Consensus 223 -~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 223 -EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp -TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred -cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 56789999999987641 23557899988887665555443
No 57
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=1.6e-13 Score=133.77 Aligned_cols=185 Identities=26% Similarity=0.296 Sum_probs=123.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.++|++++++.|...+... ..+..++|+||||||||++|+++++.+...
T Consensus 24 ~~~g~~~~~~~l~~~l~~~-------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLG-------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHT-------------------------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHhCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3799999999998887410 012578999999999999999999887432
Q ss_pred ------------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcc
Q 005663 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~ 413 (684)
++.++... ......+..++...........+.+|+|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~--- 141 (250)
T 1njg_A 73 TGITATPCGVCDNCREIEQGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--- 141 (250)
T ss_dssp TCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH---
T ss_pred CCCCCCCCcccHHHHHHhccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH---
Confidence 12222111 0112334444443321111235689999999998776
Q ss_pred cccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccc
Q 005663 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~ 493 (684)
.++.|++.++.. ..++.+|++++...
T Consensus 142 -----------~~~~l~~~l~~~---------------------~~~~~~i~~t~~~~---------------------- 167 (250)
T 1njg_A 142 -----------SFNALLKTLEEP---------------------PEHVKFLLATTDPQ---------------------- 167 (250)
T ss_dssp -----------HHHHHHHHHHSC---------------------CTTEEEEEEESCGG----------------------
T ss_pred -----------HHHHHHHHHhcC---------------------CCceEEEEEeCChH----------------------
Confidence 899999999821 12355666654110
Q ss_pred ccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeec
Q 005663 494 NMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~i 573 (684)
.+.+.+.+|+ ..+.+++++.+++.+++...+. .. .+.+
T Consensus 168 ----------------------------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~-----------~~--~~~~ 205 (250)
T 1njg_A 168 ----------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILN-----------EE--HIAH 205 (250)
T ss_dssp ----------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH-----------HT--TCCB
T ss_pred ----------------------------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHH-----------hc--CCCC
Confidence 1345677775 5799999999999998875321 12 4568
Q ss_pred CHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005663 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 574 teeAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
++++++.|++.+ +++.|.+.+++++++
T Consensus 206 ~~~~~~~l~~~~---~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 206 EPRALQLLARAA---EGSLRDALSLTDQAI 232 (250)
T ss_dssp CHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999974 446899999888765
No 58
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=4.1e-14 Score=146.76 Aligned_cols=186 Identities=24% Similarity=0.318 Sum_probs=128.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~-- 355 (684)
.++|++++++.+...+... ...++||+||||||||++|+++++.+.
T Consensus 26 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTG--------------------------------SMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------------------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred HhhCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 3799999999998877410 014699999999999999999999863
Q ss_pred ---CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHH
Q 005663 356 ---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 356 ---~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
..++.+++++..... .....+.......+ +..+.+.||+|||+|.+... .++.|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~ 133 (327)
T 1iqp_A 74 NWRHNFLELNASDERGIN----VIREKVKEFARTKP--IGGASFKIIFLDEADALTQD--------------AQQALRRT 133 (327)
T ss_dssp GHHHHEEEEETTCHHHHH----TTHHHHHHHHHSCC--GGGCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred cccCceEEeeccccCchH----HHHHHHHHHHhhCC--cCCCCCeEEEEeCCCcCCHH--------------HHHHHHHH
Confidence 247778876542100 11122222222211 22245789999999999876 89999999
Q ss_pred HhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhh
Q 005663 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~ 512 (684)
|+.. ..++.||++++...
T Consensus 134 le~~---------------------~~~~~~i~~~~~~~----------------------------------------- 151 (327)
T 1iqp_A 134 MEMF---------------------SSNVRFILSCNYSS----------------------------------------- 151 (327)
T ss_dssp HHHT---------------------TTTEEEEEEESCGG-----------------------------------------
T ss_pred HHhc---------------------CCCCeEEEEeCCcc-----------------------------------------
Confidence 9821 12345565554210
Q ss_pred ccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCCh
Q 005663 513 VKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GA 592 (684)
.+.+.+.+|+. ++.|.+++.+++.+++...+ ... .+.+++++++.|++.+ +++.
T Consensus 152 ---------~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~-----------~~~--~~~~~~~~~~~l~~~~---~g~~ 205 (327)
T 1iqp_A 152 ---------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIA-----------ENE--GLELTEEGLQAILYIA---EGDM 205 (327)
T ss_dssp ---------GSCHHHHHTEE-EEECCCCCHHHHHHHHHHHH-----------HTT--TCEECHHHHHHHHHHH---TTCH
T ss_pred ---------ccCHHHHhhCc-EEEecCCCHHHHHHHHHHHH-----------Hhc--CCCCCHHHHHHHHHHC---CCCH
Confidence 24577788887 78999999999988876521 122 4568999999999864 5567
Q ss_pred HHHHHHHHHHH
Q 005663 593 RGLRSLLENIL 603 (684)
Q Consensus 593 R~Lr~iIe~~l 603 (684)
|.+.++++.+.
T Consensus 206 r~~~~~l~~~~ 216 (327)
T 1iqp_A 206 RRAINILQAAA 216 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888888654
No 59
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.53 E-value=2.3e-15 Score=140.84 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=73.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.++|++.+++.+...+..... ...++||+||||||||++|+++++... +
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~------------------------------~~~~vll~G~~GtGKt~lA~~i~~~~~-~ 53 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK------------------------------RTSPVFLTGEAGSPFETVARYFHKNGT-P 53 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT------------------------------CSSCEEEEEETTCCHHHHHGGGCCTTS-C
T ss_pred CceeCCHHHHHHHHHHHHHhC------------------------------CCCcEEEECCCCccHHHHHHHHHHhCC-C
Confidence 368999999998888751100 126899999999999999999998887 9
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|+.++|+.+... + ....+ +.+.+++|||||||.+... .|..|+++|+
T Consensus 54 ~~~~~~~~~~~~-~--------~~~~~-------~~a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~ 100 (143)
T 3co5_A 54 WVSPARVEYLID-M--------PMELL-------QKAEGGVLYVGDIAQYSRN--------------IQTGITFIIG 100 (143)
T ss_dssp EECCSSTTHHHH-C--------HHHHH-------HHTTTSEEEEEECTTCCHH--------------HHHHHHHHHH
T ss_pred eEEechhhCChH-h--------hhhHH-------HhCCCCeEEEeChHHCCHH--------------HHHHHHHHHH
Confidence 999999876521 1 22233 3345689999999999887 9999999998
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.52 E-value=2.8e-14 Score=147.45 Aligned_cols=186 Identities=23% Similarity=0.290 Sum_probs=128.7
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---- 354 (684)
++|++++++.+...+.. . ...++||+||||||||++|+++++.+
T Consensus 19 ~~g~~~~~~~l~~~l~~--------------------~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~ 66 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVER--------------------K------------NIPHLLFSGPPGTGKTATAIALARDLFGEN 66 (319)
T ss_dssp SCSCHHHHHHHHTTTTT--------------------T------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHhC--------------------C------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc
Confidence 79999999988766530 0 01469999999999999999999987
Q ss_pred -CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHH
Q 005663 355 -NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 355 -~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
+.+++.+++++..... .....+.......+ +....+.||+|||+|.+... .++.|++.|
T Consensus 67 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~l 126 (319)
T 2chq_A 67 WRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRTM 126 (319)
T ss_dssp HHHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTGGGT
T ss_pred ccCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHHHHH
Confidence 3457888887643211 11222333221211 11245689999999999876 889999999
Q ss_pred hcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhc
Q 005663 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 434 Eg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v 513 (684)
+. ...++++|++++..
T Consensus 127 e~---------------------~~~~~~~i~~~~~~------------------------------------------- 142 (319)
T 2chq_A 127 EM---------------------YSKSCRFILSCNYV------------------------------------------- 142 (319)
T ss_dssp SS---------------------SSSSEEEEEEESCG-------------------------------------------
T ss_pred Hh---------------------cCCCCeEEEEeCCh-------------------------------------------
Confidence 82 11235566665421
Q ss_pred cchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChH
Q 005663 514 KSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 514 ~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR 593 (684)
..+.+.+.+|+. ++.|.+++.+++.+++...+ ... .+.+++++++.|++. .+++.|
T Consensus 143 -------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~-----------~~~--~~~i~~~~l~~l~~~---~~G~~r 198 (319)
T 2chq_A 143 -------SRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEIC-----------EKE--GVKITEDGLEALIYI---SGGDFR 198 (319)
T ss_dssp -------GGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHH-----------HTT--CCCBCHHHHHHHHHT---TTTCHH
T ss_pred -------hhcchHHHhhCe-EEEecCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHH---cCCCHH
Confidence 024578888986 89999999999988876521 222 456899999999974 356789
Q ss_pred HHHHHHHHHHH
Q 005663 594 GLRSLLENILM 604 (684)
Q Consensus 594 ~Lr~iIe~~l~ 604 (684)
.+.+.++.+..
T Consensus 199 ~~~~~l~~~~~ 209 (319)
T 2chq_A 199 KAINALQGAAA 209 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887653
No 61
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.51 E-value=9.7e-14 Score=158.96 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=91.2
Q ss_pred cchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccC---CCCCceEEeeccEEEE
Q 005663 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKH---PRGDNIQIDTKDILFI 464 (684)
Q Consensus 388 ~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~---~~~~~i~IdtsNiifI 464 (684)
.+.+..+.+++||||||+.+.+. +|+.|+++|+.+.+.+...+.... .....+ ..++.+|
T Consensus 194 ~g~~~~a~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~---p~~~~vI 256 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV---PCDFVLV 256 (604)
T ss_dssp CCHHHHTTTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE---ECCCEEE
T ss_pred CceeeecCCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCcc---ceeEEEE
Confidence 34567788999999999999877 999999999966555421110000 001111 2346678
Q ss_pred eCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc---eEEEecccC
Q 005663 465 CGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP---VLVSLLALT 541 (684)
Q Consensus 465 ~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d---~iI~f~pLs 541 (684)
+++|.. + ...|.|+|++||+ ..+.|++..
T Consensus 257 ~atn~~--------------------------------------~----------~~~l~~~l~~R~~v~~i~i~l~~~~ 288 (604)
T 3k1j_A 257 AAGNLD--------------------------------------T----------VDKMHPALRSRIRGYGYEVYMRTTM 288 (604)
T ss_dssp EEECHH--------------------------------------H----------HHHSCHHHHHHHHHHSEEEECCSEE
T ss_pred EecCHH--------------------------------------H----------HhhcCHHHHHHhhccceEeeccccc
Confidence 877621 0 0136799999997 567776543
Q ss_pred H---HHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCC-------ChHHHHHHHHHHHHHH
Q 005663 542 E---NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-------GARGLRSLLENILMDA 606 (684)
Q Consensus 542 ~---eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~-------GAR~Lr~iIe~~l~~a 606 (684)
+ +.+..++.. +.++ ....+....+++++++.|+++++.+.. +.|+|.++++.+..-+
T Consensus 289 ~~~~~~~~~~l~~----~~~~----~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A 355 (604)
T 3k1j_A 289 PDTIENRRKLVQF----VAQE----VKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIA 355 (604)
T ss_dssp ECCHHHHHHHHHH----HHHH----HHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH----HHHH----HhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHH
Confidence 3 344444432 2222 222233568999999999997653222 5899999998765433
No 62
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=4.4e-14 Score=148.55 Aligned_cols=190 Identities=19% Similarity=0.218 Sum_probs=127.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~-- 355 (684)
.++|++++++.+...+.. + ...++||+||||||||++|+++++.++
T Consensus 38 ~i~g~~~~~~~l~~~l~~---------------~-----------------~~~~~ll~G~~G~GKT~la~~la~~l~~~ 85 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKS---------------A-----------------NLPHMLFYGPPGTGKTSTILALTKELYGP 85 (353)
T ss_dssp TCCSCCTTHHHHHHHTTC---------------T-----------------TCCCEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhc---------------C-----------------CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 379999999988877630 0 014699999999999999999998864
Q ss_pred ----CCEEEEeccccccCCccccchHHHHHHHHhcccc--------hHHhhcCCEEEEccccccchhhcccccCCCCchH
Q 005663 356 ----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDY--------NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 356 ----~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~--------~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e 423 (684)
..++.+++++....+.+ ...+......... ........||||||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~------------- 148 (353)
T 1sxj_D 86 DLMKSRILELNASDERGISIV----REKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD------------- 148 (353)
T ss_dssp HHHTTSEEEECSSSCCCHHHH----TTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------
T ss_pred cccccceEEEccccccchHHH----HHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------
Confidence 46888888764311111 1111111111000 000124569999999999877
Q ss_pred HHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005663 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~ 503 (684)
.++.|++.|+.. ..+..||++++...
T Consensus 149 -~~~~Ll~~le~~---------------------~~~~~~il~~~~~~-------------------------------- 174 (353)
T 1sxj_D 149 -AQSALRRTMETY---------------------SGVTRFCLICNYVT-------------------------------- 174 (353)
T ss_dssp -HHHHHHHHHHHT---------------------TTTEEEEEEESCGG--------------------------------
T ss_pred -HHHHHHHHHHhc---------------------CCCceEEEEeCchh--------------------------------
Confidence 899999999821 01234444444110
Q ss_pred hhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHH
Q 005663 504 VVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~ 583 (684)
.+.|.+.+|+. .+.|.+++.+++.+++...+ ... .+.++++++++|++
T Consensus 175 ------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~-----------~~~--~~~i~~~~l~~l~~ 222 (353)
T 1sxj_D 175 ------------------RIIDPLASQCS-KFRFKALDASNAIDRLRFIS-----------EQE--NVKCDDGVLERILD 222 (353)
T ss_dssp ------------------GSCHHHHHHSE-EEECCCCCHHHHHHHHHHHH-----------HTT--TCCCCHHHHHHHHH
T ss_pred ------------------hCcchhhccCc-eEEeCCCCHHHHHHHHHHHH-----------HHh--CCCCCHHHHHHHHH
Confidence 24578888987 78999999999988886521 112 45689999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHHH
Q 005663 584 KAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 584 ~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
.+. ++.|.+.++++.+...
T Consensus 223 ~~~---G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 223 ISA---GDLRRGITLLQSASKG 241 (353)
T ss_dssp HTS---SCHHHHHHHHHHTHHH
T ss_pred HcC---CCHHHHHHHHHHHHHh
Confidence 753 5689998988876654
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.49 E-value=5.2e-13 Score=141.40 Aligned_cols=185 Identities=26% Similarity=0.307 Sum_probs=124.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p- 357 (684)
++|++++++.+...+... ..+..+||+||+|||||++|+++++.++..
T Consensus 18 ~vg~~~~~~~L~~~l~~~-------------------------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~ 66 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLG-------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 (373)
T ss_dssp SCSCHHHHHHHHHHHHHT-------------------------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTT
T ss_pred ccCcHHHHHHHHHHHHhC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 799999999999887410 012568999999999999999999988542
Q ss_pred -----------------------EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccc
Q 005663 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~ 414 (684)
++.++... ..+.+ .++.++...........+.||+|||+|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~---- 134 (373)
T 1jr3_A 67 GITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTKVE---DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH---- 134 (373)
T ss_dssp CSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCCSS---CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH----
T ss_pred CCCCCCCcccHHHHHHhccCCCceEEecccc-----cCCHH---HHHHHHHHHhhccccCCeEEEEEECcchhcHH----
Confidence 23333221 11111 12233322211111234679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccc
Q 005663 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~ 494 (684)
.++.|++.++. ...+++||++++...
T Consensus 135 ----------~~~~Ll~~le~---------------------~~~~~~~Il~~~~~~----------------------- 160 (373)
T 1jr3_A 135 ----------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ----------------------- 160 (373)
T ss_dssp ----------HHHHHHHHHHS---------------------CCSSEEEEEEESCGG-----------------------
T ss_pred ----------HHHHHHHHHhc---------------------CCCceEEEEEeCChH-----------------------
Confidence 89999999982 122356666554110
Q ss_pred cccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 495 MRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
.+.+.+.+|+ .++.|.+++.+++.+++...+.. . .+.++
T Consensus 161 ---------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~-----------~--~~~~~ 199 (373)
T 1jr3_A 161 ---------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-----------E--HIAHE 199 (373)
T ss_dssp ---------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-----------H--TCCBC
T ss_pred ---------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH-----------c--CCCCC
Confidence 2346677787 58999999999999888753211 1 45689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ +++.|.+.+++++++.
T Consensus 200 ~~a~~~l~~~~---~G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 200 PRALQLLARAA---EGSLRDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHS---SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHH
Confidence 99999999964 5568999999988753
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=5.1e-13 Score=142.00 Aligned_cols=204 Identities=20% Similarity=0.211 Sum_probs=134.8
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005663 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-- 354 (684)
+.++|+++.++.+...+..... . ..+.+++|+||||||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~------------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----N------------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----T------------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5589999999999988752111 0 012689999999999999999999987
Q ss_pred ---------CCCEEEEeccccc-c----------------CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccc
Q 005663 355 ---------NVPFVIADATTLT-Q----------------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 355 ---------~~pfv~v~~s~l~-~----------------sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~ 408 (684)
+.+++.++|.... . ....|......+..+..... ..+.||+|||+|.+.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~vlilDEi~~l~ 146 (384)
T 2qby_B 72 VKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-----NIRAIIYLDEVDTLV 146 (384)
T ss_dssp HHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-----SSCEEEEEETTHHHH
T ss_pred HhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-----cCCCEEEEECHHHhc
Confidence 8899999987543 1 01122222222333222111 122399999999997
Q ss_pred hhhcccccCCCCchHHHHHH-HHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 409 KKAESLNISRDVSGEGVQQA-LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~-LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
... .++. |..+++- . .++.+|++++..+
T Consensus 147 ~~~-------------~~~~~l~~l~~~--------------------~--~~~~iI~~t~~~~---------------- 175 (384)
T 2qby_B 147 KRR-------------GGDIVLYQLLRS--------------------D--ANISVIMISNDIN---------------- 175 (384)
T ss_dssp HST-------------TSHHHHHHHHTS--------------------S--SCEEEEEECSSTT----------------
T ss_pred cCC-------------CCceeHHHHhcC--------------------C--cceEEEEEECCCc----------------
Confidence 641 1334 4444440 0 4577777776211
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhC
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~ 567 (684)
+ ...+.+.+.+|+...+.|++++.+++.+|+...+.. .+
T Consensus 176 ---------------------~----------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~-------~~--- 214 (384)
T 2qby_B 176 ---------------------V----------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY-------GL--- 214 (384)
T ss_dssp ---------------------T----------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH-------TS---
T ss_pred ---------------------h----------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh-------hc---
Confidence 0 012457788898779999999999999999863221 00
Q ss_pred CceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005663 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 568 gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
....+++++++.+++.+....+++|.+.++++.+...+
T Consensus 215 -~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 215 -IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp -CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred -ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 13468999999999986545577899888888876543
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.48 E-value=2.7e-12 Score=136.30 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=130.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++||+.+++.+...+.....+ . .++.+++|+||||||||+||+++|..++.++
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~-------~--------------------~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMR-------G--------------------EVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH-------T--------------------CCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred ccCcHHHHHHHHHHHHHHHhc-------C--------------------CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 589999999888777421110 0 0126899999999999999999999999888
Q ss_pred EEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhccee
Q 005663 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
...++..+.. ...+...+... ....|+||||++.+.+. +++.|+..|+....
T Consensus 80 ~~~sg~~~~~--------~~~l~~~~~~~------~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~~~~~ 131 (334)
T 1in4_A 80 HVTSGPVLVK--------QGDMAAILTSL------ERGDVLFIDEIHRLNKA--------------VEELLYSAIEDFQI 131 (334)
T ss_dssp EEEETTTCCS--------HHHHHHHHHHC------CTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCC
T ss_pred EEEechHhcC--------HHHHHHHHHHc------cCCCEEEEcchhhcCHH--------------HHHHHHHHHHhccc
Confidence 7666543321 11222222211 24579999999999865 88888888873221
Q ss_pred eec-CCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 439 NVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 439 ~Vp-~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
.+. ..+ ...+.+......+.++.+.+..
T Consensus 132 ~i~~~~~----~~~~~i~~~l~~~~li~at~~~----------------------------------------------- 160 (334)
T 1in4_A 132 DIMIGKG----PSAKSIRIDIQPFTLVGATTRS----------------------------------------------- 160 (334)
T ss_dssp CC-------------------CCCEEEEEESCG-----------------------------------------------
T ss_pred ceeeccC----cccccccccCCCeEEEEecCCc-----------------------------------------------
Confidence 100 000 0001111122223333322100
Q ss_pred HHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHH
Q 005663 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 li~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~ 597 (684)
..+.+.+++|+...+.|++++.+++.+|+.+.... . .+.++++++..|++++ .+.+|.+.+
T Consensus 161 ---~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-----------~--~~~~~~~~~~~ia~~~---~G~~R~a~~ 221 (334)
T 1in4_A 161 ---GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-----------M--DVEIEDAAAEMIAKRS---RGTPRIAIR 221 (334)
T ss_dssp ---GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-----------T--TCCBCHHHHHHHHHTS---TTCHHHHHH
T ss_pred ---ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-----------c--CCCcCHHHHHHHHHhc---CCChHHHHH
Confidence 13568899999988999999999999999763211 1 4568999999999963 456799999
Q ss_pred HHHHHHHHHH
Q 005663 598 LLENILMDAM 607 (684)
Q Consensus 598 iIe~~l~~al 607 (684)
+++++...+.
T Consensus 222 ll~~~~~~a~ 231 (334)
T 1in4_A 222 LTKRVRDMLT 231 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988765543
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=2.9e-13 Score=140.14 Aligned_cols=186 Identities=18% Similarity=0.232 Sum_probs=127.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---- 354 (684)
++|++.+++.+...+... ...++||+||||+|||++|+++++.+
T Consensus 23 ~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~ 70 (323)
T 1sxj_B 23 IVGNKETIDRLQQIAKDG--------------------------------NMPHMIISGMPGIGKTTSVHCLAHELLGRS 70 (323)
T ss_dssp CCSCTHHHHHHHHHHHSC--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred HHCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 689999999998887410 01359999999999999999999886
Q ss_pred -CCCEEEEeccccccCCcccc-chHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHH
Q 005663 355 -NVPFVIADATTLTQAGYVGE-DVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 355 -~~pfv~v~~s~l~~sgyvG~-~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
+.+++.+++++.. +. .....+..+..... .+....+.||+|||+|.+... .++.|++.
T Consensus 71 ~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~-~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~ 130 (323)
T 1sxj_B 71 YADGVLELNASDDR-----GIDVVRNQIKHFAQKKL-HLPPGKHKIVILDEADSMTAG--------------AQQALRRT 130 (323)
T ss_dssp HHHHEEEECTTSCC-----SHHHHHTHHHHHHHBCC-CCCTTCCEEEEEESGGGSCHH--------------HHHTTHHH
T ss_pred ccCCEEEecCcccc-----ChHHHHHHHHHHHhccc-cCCCCCceEEEEECcccCCHH--------------HHHHHHHH
Confidence 3457888876532 11 11122222221110 011224679999999999876 88999999
Q ss_pred HhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhh
Q 005663 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~ 512 (684)
++.. ..+++||++++..
T Consensus 131 le~~---------------------~~~~~~il~~~~~------------------------------------------ 147 (323)
T 1sxj_B 131 MELY---------------------SNSTRFAFACNQS------------------------------------------ 147 (323)
T ss_dssp HHHT---------------------TTTEEEEEEESCG------------------------------------------
T ss_pred Hhcc---------------------CCCceEEEEeCCh------------------------------------------
Confidence 9820 1234555554410
Q ss_pred ccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCCh
Q 005663 513 VKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GA 592 (684)
..+.+.+.+|+. ++.|.+++.+++.+++...+.. . .+.+++++++.|++.+ +++.
T Consensus 148 --------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~~~~~~~l~~~~---~G~~ 202 (323)
T 1sxj_B 148 --------NKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKL-----------E--DVKYTNDGLEAIIFTA---EGDM 202 (323)
T ss_dssp --------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-----------H--TCCBCHHHHHHHHHHH---TTCH
T ss_pred --------hhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---CCCH
Confidence 024577888876 8999999999999988753211 1 4568999999999974 5567
Q ss_pred HHHHHHHHHHHH
Q 005663 593 RGLRSLLENILM 604 (684)
Q Consensus 593 R~Lr~iIe~~l~ 604 (684)
|.+.++++....
T Consensus 203 r~a~~~l~~~~~ 214 (323)
T 1sxj_B 203 RQAINNLQSTVA 214 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887763
No 67
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=2.3e-13 Score=143.94 Aligned_cols=213 Identities=20% Similarity=0.177 Sum_probs=135.9
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005663 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-- 354 (684)
+.++|++..++.+...+..... + ..+.+++|+||||||||++|+++++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~------------~----------------~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR------------G----------------EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS------------S----------------CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc------------C----------------CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999988887631000 0 013789999999999999999999888
Q ss_pred -------CCCEEEEeccccccC---------------CccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhc
Q 005663 355 -------NVPFVIADATTLTQA---------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 355 -------~~pfv~v~~s~l~~s---------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~ 412 (684)
+.+++.++|...... ...|......+..++.... ....+.||||||+|.+...+.
T Consensus 71 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~~ 147 (387)
T 2v1u_A 71 RASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRPG 147 (387)
T ss_dssp HHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHSTT
T ss_pred HHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccCC
Confidence 788999998764321 0112222222333222111 012346999999999976410
Q ss_pred ccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEe-eccEEEEeCCCCcCHHHHHHhccccCCCCcCccc
Q 005663 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQID-TKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~Id-tsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v 491 (684)
.++.|..+++-.. . .. ..++.+|++++..++
T Consensus 148 ------------~~~~l~~l~~~~~-----~------------~~~~~~~~~I~~t~~~~~------------------- 179 (387)
T 2v1u_A 148 ------------GQDLLYRITRINQ-----E------------LGDRVWVSLVGITNSLGF------------------- 179 (387)
T ss_dssp ------------HHHHHHHHHHGGG-----C------------C-----CEEEEECSCSTT-------------------
T ss_pred ------------CChHHHhHhhchh-----h------------cCCCceEEEEEEECCCch-------------------
Confidence 3455555554100 0 00 234667777652110
Q ss_pred ccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCce
Q 005663 492 RANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~ 570 (684)
...+.+.+.+|+.. .+.|++++.+++.+|+...+.. .+ ..
T Consensus 180 ----------------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~-------~~----~~ 220 (387)
T 2v1u_A 180 ----------------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE-------AF----NP 220 (387)
T ss_dssp ----------------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH-------HB----CT
T ss_pred ----------------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh-------hc----cC
Confidence 01245788889975 8999999999999999764321 01 13
Q ss_pred eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 571 l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
..+++++++.+++.+....+++|.+.++++.+...+.
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 4588999999999876556779999999998876554
No 68
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.47 E-value=5.4e-13 Score=131.62 Aligned_cols=169 Identities=19% Similarity=0.259 Sum_probs=115.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
.+++|+||||||||++|+++++.+. .+++.+++.++... + .. .+.. ...+.+|+|||++.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-----~~----~~~~------~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-----TA----LLEG------LEQFDLICIDDVDAV 116 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-----GG----GGTT------GGGSSEEEEETGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-----HH----HHHh------ccCCCEEEEeccccc
Confidence 7899999999999999999998873 67888888776531 1 00 1111 135689999999998
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
.... ..++.|+.+++... ....+.+|++++...
T Consensus 117 ~~~~------------~~~~~l~~~l~~~~-------------------~~~~~~ii~~~~~~~---------------- 149 (242)
T 3bos_A 117 AGHP------------LWEEAIFDLYNRVA-------------------EQKRGSLIVSASASP---------------- 149 (242)
T ss_dssp TTCH------------HHHHHHHHHHHHHH-------------------HHCSCEEEEEESSCT----------------
T ss_pred cCCH------------HHHHHHHHHHHHHH-------------------HcCCCeEEEEcCCCH----------------
Confidence 7651 13778888876210 111122333433110
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
... ..+.+.+.+|+. .++.+.+++.+++.+++...+.
T Consensus 150 -----------------------~~~-------~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~----------- 188 (242)
T 3bos_A 150 -----------------------MEA-------GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA----------- 188 (242)
T ss_dssp -----------------------TTT-------TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH-----------
T ss_pred -----------------------HHH-------HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH-----------
Confidence 000 013377888886 7899999999999998875321
Q ss_pred hCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005663 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.. .+.++++++++|++.. +++.|.+.+++++++..+..
T Consensus 189 ~~--~~~~~~~~~~~l~~~~---~g~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 189 MR--GLQLPEDVGRFLLNRM---ARDLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp HT--TCCCCHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHH
T ss_pred Hc--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHH
Confidence 12 3568999999999862 56789999999998877643
No 69
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.46 E-value=3.5e-13 Score=148.80 Aligned_cols=174 Identities=18% Similarity=0.263 Sum_probs=116.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccCCccccchHHHHHHHHhcccchHH--hh-cCCEEEEc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA--AA-QQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~--~a-~~gVLfID 402 (684)
.+++|+||||||||+||+++++.+ +.+++.+++..+.. .+ ...+.......+. .. .+.|||||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~vL~ID 201 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DL--------VDSMKEGKLNEFREKYRKKVDILLID 201 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HH--------HHHHHTTCHHHHHHHHTTTCSEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HH--------HHHHHcccHHHHHHHhcCCCCEEEEe
Confidence 689999999999999999999988 78899999876531 11 1111110000011 12 56899999
Q ss_pred cccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhcccc
Q 005663 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 403 EIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~ 482 (684)
||+.+...+ ..|+.|+..|+... . .+..+|++++...
T Consensus 202 Ei~~l~~~~------------~~q~~l~~~l~~l~-------------------~-~~~~iIitt~~~~----------- 238 (440)
T 2z4s_A 202 DVQFLIGKT------------GVQTELFHTFNELH-------------------D-SGKQIVICSDREP----------- 238 (440)
T ss_dssp CGGGGSSCH------------HHHHHHHHHHHHHH-------------------T-TTCEEEEEESSCG-----------
T ss_pred CcccccCCh------------HHHHHHHHHHHHHH-------------------H-CCCeEEEEECCCH-----------
Confidence 999987631 17888888886210 0 1112233332100
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc--eEEEecccCHHHHHHHHhchHHHHHHHH
Q 005663 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 483 ~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy 560 (684)
.++ ..+.+.|++|+. .++.+.+++.+++.+|+...+..
T Consensus 239 ---------------------------------~~l--~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~----- 278 (440)
T 2z4s_A 239 ---------------------------------QKL--SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI----- 278 (440)
T ss_dssp ---------------------------------GGC--SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH-----
T ss_pred ---------------------------------HHH--HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH-----
Confidence 000 125688889996 68999999999999988764321
Q ss_pred HHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 561 ~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
. .+.++++++++|++.. ++++|.|.+++++++..+.
T Consensus 279 ------~--~~~i~~e~l~~la~~~---~gn~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 279 ------E--HGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp ------H--TCCCCTTHHHHHHHHC---CSCHHHHHHHHHHHHHHHH
T ss_pred ------c--CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 1 4568999999999863 5678999999999887664
No 70
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.46 E-value=4.6e-13 Score=142.30 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=139.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.+.|.++-.+.+...+...... -.+.+++|+||||||||++++.+++.+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~----------------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS----------------------------SQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHhcC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3678888888888777522210 013799999999999999999999988
Q ss_pred -------CCCEEEEeccccccC---------Ccccc-----chHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcc
Q 005663 355 -------NVPFVIADATTLTQA---------GYVGE-----DVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 355 -------~~pfv~v~~s~l~~s---------gyvG~-----~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~ 413 (684)
...++.+||..+..+ .+.|. .....+...|..... ....+.||+|||||.+. . .
T Consensus 73 ~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~-q- 147 (318)
T 3te6_A 73 SARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S-E- 147 (318)
T ss_dssp TTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C-T-
T ss_pred hhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c-c-
Confidence 245889999876421 01111 113445555543210 12346799999999997 2 0
Q ss_pred cccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccc
Q 005663 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~ 493 (684)
.+...|+++.+ .+.+++++|+.+|..++.
T Consensus 148 ----------~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~-------------------- 176 (318)
T 3te6_A 148 ----------KILQYFEKWIS---------------------SKNSKLSIICVGGHNVTI-------------------- 176 (318)
T ss_dssp ----------HHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCC--------------------
T ss_pred ----------hHHHHHHhccc---------------------ccCCcEEEEEEecCcccc--------------------
Confidence 14444444433 123457778777633210
Q ss_pred ccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc-eEEEecccCHHHHHHHHhchHHHHHHHH------------
Q 005663 494 NMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQY------------ 560 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d-~iI~f~pLs~eel~~Il~~~l~~L~kqy------------ 560 (684)
...+.+.+.+|+. .++.|+||+.+|+.+|+...+..+.+.+
T Consensus 177 --------------------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~ 230 (318)
T 3te6_A 177 --------------------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTI 230 (318)
T ss_dssp --------------------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEE
T ss_pred --------------------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccc
Confidence 0012355677886 5899999999999999988554431100
Q ss_pred ----H----HHH--hhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc
Q 005663 561 ----R----KMF--QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 561 ----~----~~~--~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
. ... ......+.++++|+++++++.....+.+|-.-.++++++..+-.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 231 YNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp CCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 0 000 000123478999999999975555677998888888887766544
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.46 E-value=1.7e-12 Score=137.81 Aligned_cols=211 Identities=16% Similarity=0.184 Sum_probs=136.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccc--eEEEEccCCCcHHHHHHHHHHHh-
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS--NILLMGPTGSGKTLLAKTLARYV- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vLL~GPpGTGKT~LAkaLA~~l- 354 (684)
.++|++..++.+...+..... +. .+. +++|+||||||||++++++++.+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~----~~------------------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLR----NP------------------------GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHH----ST------------------------TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHc----CC------------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 479999999999988852111 00 013 89999999999999999999988
Q ss_pred ---CCCEEEEeccccccC-----------C----ccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhccccc
Q 005663 355 ---NVPFVIADATTLTQA-----------G----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 355 ---~~pfv~v~~s~l~~s-----------g----yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~ 416 (684)
+.+++.++|...... + ..|......+..+.... .....+.||+|||++.+...
T Consensus 70 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l~~~------ 140 (389)
T 1fnn_A 70 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RERDLYMFLVLDDAFNLAPD------ 140 (389)
T ss_dssp TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGSCHH------
T ss_pred hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hhcCCeEEEEEECccccchH------
Confidence 567899998754310 0 01111111111111100 01123569999999999554
Q ss_pred CCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccc
Q 005663 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~ 496 (684)
.+..|+++++...- ....++.+|++++..++
T Consensus 141 --------~~~~L~~~~~~~~~-----------------~~~~~~~iI~~~~~~~~------------------------ 171 (389)
T 1fnn_A 141 --------ILSTFIRLGQEADK-----------------LGAFRIALVIVGHNDAV------------------------ 171 (389)
T ss_dssp --------HHHHHHHHTTCHHH-----------------HSSCCEEEEEEESSTHH------------------------
T ss_pred --------HHHHHHHHHHhCCC-----------------CCcCCEEEEEEECCchH------------------------
Confidence 89999999872100 00134666666552110
Q ss_pred cCCCchhhhhhhhhhhccchhHHhcCCChhhhcccce-EEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCH
Q 005663 497 AGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~-iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~ite 575 (684)
. ..+.+.+.+|+.. .+.|++++.+++.+++...+... + ....+++
T Consensus 172 -------------~----------~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~-------~----~~~~~~~ 217 (389)
T 1fnn_A 172 -------------L----------NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG-------L----AEGSYSE 217 (389)
T ss_dssp -------------H----------HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH-------B----CTTSSCH
T ss_pred -------------H----------HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh-------c----CCCCCCH
Confidence 0 1245677778875 79999999999999887632211 1 1236899
Q ss_pred HHHHHHHHhcCCC------CCChHHHHHHHHHHHHHHHh
Q 005663 576 NALRLIAKKAISK------NTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 576 eAl~~La~~a~~~------~~GAR~Lr~iIe~~l~~al~ 608 (684)
++++.+++.++.. .+++|.+.++++.++..+..
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999987644 66789999999988765543
No 72
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=2.6e-12 Score=144.44 Aligned_cols=210 Identities=18% Similarity=0.202 Sum_probs=127.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++|++.+++.|...+...........+. .+... ..++.++||+||||||||++|+++|+.++.++
T Consensus 41 liG~~~~~~~L~~~l~~~~~~~~~~~~~---~g~~~------------~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 41 VCGNKGSVMKLKNWLANWENSKKNSFKH---AGKDG------------SGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CCSCHHHHHHHHHHHHTHHHHHHTTTCC---CCTTS------------TTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred hcCCHHHHHHHHHHHHHhHhhchhhccc---cCccC------------CCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 7999999999999886322211000000 00000 01237999999999999999999999999999
Q ss_pred EEEeccccccCCccccc-hHHH-----HHHHHhccc-chHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHH
Q 005663 359 VIADATTLTQAGYVGED-VESI-----LYKLLTVSD-YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 359 v~v~~s~l~~sgyvG~~-~~~~-----l~~l~~~a~-~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
+.++++++... +.... .... +..++.... .......+.||||||||.+..... +..+.|++
T Consensus 106 i~in~s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----------~~l~~L~~ 173 (516)
T 1sxj_A 106 LEQNASDVRSK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----------GGVGQLAQ 173 (516)
T ss_dssp EEECTTSCCCH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----------THHHHHHH
T ss_pred EEEeCCCcchH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----------HHHHHHHH
Confidence 99999876521 11000 0000 000111100 000124578999999999976511 15688888
Q ss_pred HHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhh
Q 005663 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~ 511 (684)
+++... ..+++|++....
T Consensus 174 ~l~~~~---------------------~~iIli~~~~~~----------------------------------------- 191 (516)
T 1sxj_A 174 FCRKTS---------------------TPLILICNERNL----------------------------------------- 191 (516)
T ss_dssp HHHHCS---------------------SCEEEEESCTTS-----------------------------------------
T ss_pred HHHhcC---------------------CCEEEEEcCCCC-----------------------------------------
Confidence 887210 114444432100
Q ss_pred hccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCC
Q 005663 512 TVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG 591 (684)
Q Consensus 512 ~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~G 591 (684)
...+.|. |....+.|.+++.+++.+++...+. .. .+.+++++++.|++.+ +++
T Consensus 192 ----------~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i~~-----------~~--~~~i~~~~l~~la~~s---~Gd 244 (516)
T 1sxj_A 192 ----------PKMRPFD-RVCLDIQFRRPDANSIKSRLMTIAI-----------RE--KFKLDPNVIDRLIQTT---RGD 244 (516)
T ss_dssp ----------STTGGGT-TTSEEEECCCCCHHHHHHHHHHHHH-----------HH--TCCCCTTHHHHHHHHT---TTC
T ss_pred ----------ccchhhH-hceEEEEeCCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHc---CCc
Confidence 0113343 4455899999999999888865211 11 4568999999999873 456
Q ss_pred hHHHHHHHHHHHH
Q 005663 592 ARGLRSLLENILM 604 (684)
Q Consensus 592 AR~Lr~iIe~~l~ 604 (684)
.|.+.++++.+..
T Consensus 245 iR~~i~~L~~~~~ 257 (516)
T 1sxj_A 245 IRQVINLLSTIST 257 (516)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999888887643
No 73
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.42 E-value=3.2e-13 Score=127.57 Aligned_cols=116 Identities=25% Similarity=0.310 Sum_probs=76.2
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005663 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-- 354 (684)
+.++|+++.++.+...+.. ..+.+++|+||||||||++|+++++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3479999999988877631 012689999999999999999999887
Q ss_pred --------CCCEEEEecccccc-CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHH
Q 005663 355 --------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 355 --------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~v 425 (684)
+.+++.+++..+.. ..+.|.. ...+..++.... ....+.||+|||+|.+...+.. ....+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~-~~~~~-----~ 139 (195)
T 1jbk_A 70 GEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA-DGAMD-----A 139 (195)
T ss_dssp TCSCGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHH---HSTTTEEEEEETGGGGTT-------CCC-----C
T ss_pred CCCchhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCcc-cchHH-----H
Confidence 67888899877642 2233332 334444443211 1123569999999999765221 11111 6
Q ss_pred HHHHHHHHh
Q 005663 426 QQALLKMLE 434 (684)
Q Consensus 426 q~~LL~~LE 434 (684)
++.|..+++
T Consensus 140 ~~~l~~~~~ 148 (195)
T 1jbk_A 140 GNMLKPALA 148 (195)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 777888776
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=7.6e-13 Score=156.43 Aligned_cols=218 Identities=22% Similarity=0.296 Sum_probs=144.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.|+|++++++.|.+.+..+........ ..+ ..++.++||+||||||||++|++||..++.+
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~----~l~---------------i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFK----AIG---------------VKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGT----SSC---------------CCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHH----hcC---------------CCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 379999999999999864333211000 000 0123789999999999999999999999999
Q ss_pred EEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcce
Q 005663 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
++.+++.++. ..+.|+. +..+..+|+.+. ...++++||||||.+...++. ........+++.|+.+|+|..
T Consensus 266 ~i~v~~~~l~-~~~~g~~-~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp EEEEEHHHHS-SSSTTHH-HHHHHHHHHHHH----HHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSC
T ss_pred EEEEEchHhh-hhhhhhH-HHHHHHHHHHHH----hcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhc
Confidence 9999999887 4567765 566777776543 346789999999999876432 122233468899999998532
Q ss_pred eeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchh
Q 005663 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
- ..++++|+++|..+
T Consensus 337 ~-------------------~~~v~vI~atn~~~---------------------------------------------- 351 (806)
T 1ypw_A 337 Q-------------------RAHVIVMAATNRPN---------------------------------------------- 351 (806)
T ss_dssp T-------------------TSCCEEEEECSCTT----------------------------------------------
T ss_pred c-------------------cccEEEecccCCch----------------------------------------------
Confidence 1 13466676665211
Q ss_pred HHhcCCChhhh--cccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHH
Q 005663 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 li~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~L 595 (684)
.+.|.+. +||+..+.+..++.++..+|+...... ..+ ..+..+..++.. ..++..+.+
T Consensus 352 ----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~-------------~~l-~~~~~l~~la~~--t~g~~g~dl 411 (806)
T 1ypw_A 352 ----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-------------MKL-ADDVDLEQVANE--THGHVGADL 411 (806)
T ss_dssp ----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT-------------SCC-CTTCCTHHHHHS--CSSCCHHHH
T ss_pred ----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc-------------CCC-cccchhHHHHHh--hcCcchHHH
Confidence 1234444 489999999999999999888643211 111 122224555553 344445677
Q ss_pred HHHHHHHHHHHHh
Q 005663 596 RSLLENILMDAMY 608 (684)
Q Consensus 596 r~iIe~~l~~al~ 608 (684)
..++......++.
T Consensus 412 ~~l~~ea~~~a~r 424 (806)
T 1ypw_A 412 AALCSEAALQAIR 424 (806)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7776666555544
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=2.2e-12 Score=136.22 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=50.9
Q ss_pred CChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC-HHHHHHHHHhcCCCCCChHHHHHHHHH
Q 005663 523 LIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARGLRSLLEN 601 (684)
Q Consensus 523 f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it-eeAl~~La~~a~~~~~GAR~Lr~iIe~ 601 (684)
+.|.+.+|+ .++.|.+++.+++.+++...+. .. .+.++ +++++.|++.+ +++.|.+.++++.
T Consensus 177 l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~-----------~~--~~~~~~~~~l~~i~~~~---~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 177 IIAPIKSQC-LLIRCPAPSDSEISTILSDVVT-----------NE--RIQLETKDILKRIAQAS---NGNLRVSLLMLES 239 (354)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH-----------HH--TCEECCSHHHHHHHHHH---TTCHHHHHHHHTH
T ss_pred HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHH-----------Hc--CCCCCcHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 457788898 6899999999999998875321 11 45688 99999999874 5678999999997
Q ss_pred HHH
Q 005663 602 ILM 604 (684)
Q Consensus 602 ~l~ 604 (684)
+..
T Consensus 240 ~~~ 242 (354)
T 1sxj_E 240 MAL 242 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=1.7e-12 Score=137.54 Aligned_cols=183 Identities=21% Similarity=0.309 Sum_probs=120.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~-- 356 (684)
++||+++++.|...+... ...+++|+||||||||++|+++|+.+..
T Consensus 27 ~~g~~~~~~~L~~~i~~g--------------------------------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEG--------------------------------KLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 689999999998887410 0145999999999999999999998743
Q ss_pred ---CEEEEeccccccCCccccc-hHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHH
Q 005663 357 ---PFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ---pfv~v~~s~l~~sgyvG~~-~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
.+..+++++.. |.+ ....+..+.+.... + .....|++|||+|.+... .+++|++.
T Consensus 75 ~~~~~~~~~~~~~~-----~~~~ir~~i~~~~~~~~~-~-~~~~~viiiDe~~~l~~~--------------~~~~L~~~ 133 (340)
T 1sxj_C 75 YSNMVLELNASDDR-----GIDVVRNQIKDFASTRQI-F-SKGFKLIILDEADAMTNA--------------AQNALRRV 133 (340)
T ss_dssp HHHHEEEECTTSCC-----SHHHHHTHHHHHHHBCCS-S-SCSCEEEEETTGGGSCHH--------------HHHHHHHH
T ss_pred ccceEEEEcCcccc-----cHHHHHHHHHHHHhhccc-C-CCCceEEEEeCCCCCCHH--------------HHHHHHHH
Confidence 25666665421 211 11122222211110 0 123679999999999876 89999999
Q ss_pred HhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhh
Q 005663 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~ 512 (684)
||.. ..++.||++++..
T Consensus 134 le~~---------------------~~~~~~il~~n~~------------------------------------------ 150 (340)
T 1sxj_C 134 IERY---------------------TKNTRFCVLANYA------------------------------------------ 150 (340)
T ss_dssp HHHT---------------------TTTEEEEEEESCG------------------------------------------
T ss_pred HhcC---------------------CCCeEEEEEecCc------------------------------------------
Confidence 9821 1224455554411
Q ss_pred ccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCCh
Q 005663 513 VKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GA 592 (684)
..+.|.+.+|+. ++.|.+++.+++.+++... +... .+.+++++++.+++.+ ++..
T Consensus 151 --------~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~-----------~~~~--~~~i~~~~~~~i~~~s---~G~~ 205 (340)
T 1sxj_C 151 --------HKLTPALLSQCT-RFRFQPLPQEAIERRIANV-----------LVHE--KLKLSPNAEKALIELS---NGDM 205 (340)
T ss_dssp --------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHH-----------HHTT--TCCBCHHHHHHHHHHH---TTCH
T ss_pred --------cccchhHHhhce-eEeccCCCHHHHHHHHHHH-----------HHHc--CCCCCHHHHHHHHHHc---CCCH
Confidence 135588889986 7899999999988877642 1112 4568999999999874 3445
Q ss_pred HHHHHHHHHH
Q 005663 593 RGLRSLLENI 602 (684)
Q Consensus 593 R~Lr~iIe~~ 602 (684)
|.+.++++.+
T Consensus 206 r~~~~~l~~~ 215 (340)
T 1sxj_C 206 RRVLNVLQSC 215 (340)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 77
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.37 E-value=2.5e-12 Score=143.07 Aligned_cols=169 Identities=23% Similarity=0.307 Sum_probs=102.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---- 354 (684)
|+|++..++.+...+.. ..+.++||+||||||||++|+++|+.+
T Consensus 182 iiGr~~~i~~l~~~l~r--------------------------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~ 229 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSR--------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNE 229 (468)
T ss_dssp CCCCHHHHHHHHHHHHC--------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSC
T ss_pred ccCcHHHHHHHHHHHhc--------------------------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 79999999999888741 012789999999999999999999997
Q ss_pred ------CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHH
Q 005663 355 ------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 355 ------~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~ 428 (684)
+.+++.++++ ..|.|.. +..+..++.... ...++||||| ... + +++.
T Consensus 230 ~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~----~~~~~iLfiD----~~~---------~-----a~~~ 282 (468)
T 3pxg_A 230 VPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI---------D-----ASNI 282 (468)
T ss_dssp SCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C---------------------
T ss_pred CChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHH----hcCCeEEEEe----Cch---------h-----HHHH
Confidence 7789999887 3455553 334444444321 2457899999 111 1 7788
Q ss_pred HHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhh
Q 005663 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ 508 (684)
|++.|+. .++.+|+++|.....+.+
T Consensus 283 L~~~L~~-----------------------g~v~vI~at~~~e~~~~~-------------------------------- 307 (468)
T 3pxg_A 283 LKPSLAR-----------------------GELQCIGATTLDEYRKYI-------------------------------- 307 (468)
T ss_dssp -CCCTTS-----------------------SSCEEEEECCTTTTHHHH--------------------------------
T ss_pred HHHhhcC-----------------------CCEEEEecCCHHHHHHHh--------------------------------
Confidence 8888771 125567776643211111
Q ss_pred hhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHh
Q 005663 509 LMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 509 ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~ 584 (684)
.+.|.|.+||. +|.+.+++.+++.+|+...+.. |.. . ..+.++++++..++..
T Consensus 308 -------------~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~----~~~---~--~~~~i~~~al~~l~~~ 360 (468)
T 3pxg_A 308 -------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLRDR----YEA---H--HRVSITDDAIEAAVKL 360 (468)
T ss_dssp -------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTT----SGG---G--SSCSCCHHHHHHHHHH
T ss_pred -------------hcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHH----HHH---h--cCCCCCHHHHHHHHHH
Confidence 24588999998 5999999999999999753221 111 1 1344666666666543
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.36 E-value=5.9e-12 Score=149.62 Aligned_cols=187 Identities=20% Similarity=0.279 Sum_probs=111.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|+++.++.+...+.. + .+.++||+||||||||++|+++|+.+
T Consensus 171 ~viGr~~~i~~l~~~l~~-----------~---------------------~~~~vlL~G~pG~GKT~la~~la~~l~~~ 218 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLR-----------R---------------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKG 218 (854)
T ss_dssp CCCSCHHHHHHHHHHHHC-----------S---------------------SCCCCEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCcHHHHHHHHHHHhc-----------C---------------------CCCceEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 379999999988887741 0 12688999999999999999999987
Q ss_pred -------CCCEEEEecccccc-CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHH
Q 005663 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq 426 (684)
+.+++.++++.+.. ..|.|.. +..+..++..... ...+.||||||+|.+...+.. .....++
T Consensus 219 ~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~------~g~~~~~ 288 (854)
T 1qvr_A 219 DVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQ---SQGEVILFIDELHTVVGAGKA------EGAVDAG 288 (854)
T ss_dssp CSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHT---TCSSEEEEECCC----------------------
T ss_pred CCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHh---cCCCeEEEEecHHHHhccCCc------cchHHHH
Confidence 78899999988753 4466654 4556666554321 124579999999999865321 1112377
Q ss_pred HHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhh
Q 005663 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~ 506 (684)
+.|..+++.. ++.+|++++.....+
T Consensus 289 ~~L~~~l~~~-----------------------~i~~I~at~~~~~~~-------------------------------- 313 (854)
T 1qvr_A 289 NMLKPALARG-----------------------ELRLIGATTLDEYRE-------------------------------- 313 (854)
T ss_dssp ---HHHHHTT-----------------------CCCEEEEECHHHHHH--------------------------------
T ss_pred HHHHHHHhCC-----------------------CeEEEEecCchHHhh--------------------------------
Confidence 8888888721 133555554211000
Q ss_pred hhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhc
Q 005663 507 SSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 507 ~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a 585 (684)
....|.|.+||+. +.+++++.+++.+|++. +..+|... . .+.++++++..+++.+
T Consensus 314 --------------~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~----~~~~~~~~---~--~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 314 --------------IEKDPALERRFQP-VYVDEPTVEETISILRG----LKEKYEVH---H--GVRISDSAIIAAATLS 368 (854)
T ss_dssp --------------HTTCTTTCSCCCC-EEECCCCHHHHHHHHHH----HHHHHHHH---T--TCEECHHHHHHHHHHH
T ss_pred --------------hccCHHHHhCCce-EEeCCCCHHHHHHHHHh----hhhhhhhh---c--CCCCCHHHHHHHHHHH
Confidence 1245889999995 89999999999999975 33333321 2 4668999999888753
No 79
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.35 E-value=4.8e-12 Score=140.28 Aligned_cols=238 Identities=13% Similarity=0.123 Sum_probs=143.2
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005663 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~~l~~~Ld~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAk 348 (684)
..+.+.+.. |+||+.+|+.|.-++.....+ .....|+||.|+||| ||.+|+
T Consensus 206 ~~l~~sIap-I~G~e~vK~aLll~L~GG~~k---------------------------~rgdihVLL~G~PGt-KS~Lar 256 (506)
T 3f8t_A 206 TTFARAIAP-LPGAEEVGKMLALQLFSCVGK---------------------------NSERLHVLLAGYPVV-CSEILH 256 (506)
T ss_dssp HHHHHHHCC-STTCHHHHHHHHHHHTTCCSS---------------------------GGGCCCEEEESCHHH-HHHHHH
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHcCCccc---------------------------cCCceeEEEECCCCh-HHHHHH
Confidence 347778888 999999999988877411100 001159999999999 999999
Q ss_pred HH-HHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHH
Q 005663 349 TL-ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 349 aL-A~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~ 427 (684)
++ ++.+....+...... ...+..+. .... .. +...++.+..|.+||+|||||+++.++ +|.
T Consensus 257 ~i~~~i~pR~~ft~g~~s-s~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~--------------~qs 318 (506)
T 3f8t_A 257 HVLDHLAPRGVYVDLRRT-ELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEP--------------HRW 318 (506)
T ss_dssp HHHHHTCSSEEEEEGGGC-CHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHH--------------HHH
T ss_pred HHHHHhCCCeEEecCCCC-CccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHH--------------HHH
Confidence 99 887744332221110 00111111 0000 12 334456677788999999999999988 999
Q ss_pred HHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhh
Q 005663 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~ 507 (684)
+|++.||.+.++|. |. . -..++.+|+|.|... .|... .
T Consensus 319 aLlEaMEe~~VtI~--G~---------~-lparf~VIAA~NP~~--------------~yd~~----------------~ 356 (506)
T 3f8t_A 319 ALMEAMDKGTVTVD--GI---------A-LNARCAVLAAINPGE--------------QWPSD----------------P 356 (506)
T ss_dssp HHHHHHHHSEEEET--TE---------E-EECCCEEEEEECCCC----------------CCS----------------C
T ss_pred HHHHHHhCCcEEEC--CE---------E-cCCCeEEEEEeCccc--------------ccCCC----------------C
Confidence 99999997777763 21 1 224466777777432 11100 0
Q ss_pred hhhhhccchhHHhcCCChhhhcccceEEEecccCHHHH-----HHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHH
Q 005663 508 SLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQL-----VQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 508 ~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel-----~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La 582 (684)
.+ + ...+++++++|||.++...++...+. ..++. ....++|....+...+...+++++.++|.
T Consensus 357 s~-~--------~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~~ar~~~~~p~ls~ea~~yI~ 424 (506)
T 3f8t_A 357 PI-A--------RIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLLYAIREHPAPELTEEARKRLE 424 (506)
T ss_dssp GG-G--------GCCSCHHHHTTCSEEEETTC--------------CC---HHHHHHHHHHHHHHCSCCEECHHHHHHHH
T ss_pred Cc-c--------ccCCChHHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHHHHHhcCCCceeCHHHHHHHH
Confidence 00 1 22588999999998776655543222 11221 23455666555434457889999998887
Q ss_pred Hhc---------------CCCCCChHHHHHHHHHHHHHHH
Q 005663 583 KKA---------------ISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 583 ~~a---------------~~~~~GAR~Lr~iIe~~l~~al 607 (684)
+.. ...+..+|.+..++.-.-..|.
T Consensus 425 ~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~ 464 (506)
T 3f8t_A 425 HWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHAR 464 (506)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHH
Confidence 531 1234567999998865444343
No 80
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=1.4e-11 Score=129.93 Aligned_cols=212 Identities=18% Similarity=0.213 Sum_probs=134.4
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005663 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-- 354 (684)
+.++|+++.++.+...+..... + ..+..++|+||||||||++++++++.+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~------------~----------------~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR------------E----------------EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG------------T----------------CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc------------C----------------CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3479999999988876631100 0 012689999999999999999999988
Q ss_pred ----CCCEEEEeccccccC---------------CccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccc
Q 005663 355 ----NVPFVIADATTLTQA---------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 355 ----~~pfv~v~~s~l~~s---------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~ 415 (684)
+.+++.++|...... ...|......+..+..... ....+.||+|||++.+......
T Consensus 72 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~~~~-- 146 (386)
T 2qby_A 72 KFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DYGSQVVIVLDEIDAFVKKYND-- 146 (386)
T ss_dssp HTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TCCSCEEEEEETHHHHHHSSCS--
T ss_pred HhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEcChhhhhccCcC--
Confidence 788999998643210 0112222222322222110 0123679999999998754210
Q ss_pred cCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCccccccc
Q 005663 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~ 495 (684)
.++..|++.++.. ...++.+|++++..+
T Consensus 147 --------~~l~~l~~~~~~~--------------------~~~~~~~I~~~~~~~------------------------ 174 (386)
T 2qby_A 147 --------DILYKLSRINSEV--------------------NKSKISFIGITNDVK------------------------ 174 (386)
T ss_dssp --------THHHHHHHHHHSC--------------------CC--EEEEEEESCGG------------------------
T ss_pred --------HHHHHHhhchhhc--------------------CCCeEEEEEEECCCC------------------------
Confidence 1788888888621 123466777665221
Q ss_pred ccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccc-eEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecC
Q 005663 496 RAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d-~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~it 574 (684)
++. .+.+.+.+|+. ..+.|++++.+++.+++...+.. ......++
T Consensus 175 -------------~~~----------~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~-----------~~~~~~~~ 220 (386)
T 2qby_A 175 -------------FVD----------LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM-----------AFKPGVLP 220 (386)
T ss_dssp -------------GGG----------GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH-----------HBCSSCSC
T ss_pred -------------hHh----------hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh-----------hccCCCCC
Confidence 000 13456667775 38999999999999998763211 01135689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005663 575 ENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 575 eeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
+++++.+++.+....+++|.+.++++.+...+.
T Consensus 221 ~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 221 DNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999764444668888888887765443
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.33 E-value=1.5e-11 Score=130.46 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=103.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccCCccccchHHHHHHHHhc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p------------------------fv~v~~s~l~~sgyvG~~~~~~l~~l~~~ 386 (684)
..+||+||||+|||++|+++|+.+... +..++..+- ....+ -..++++++.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~---i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLG---VDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBC---HHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCC---HHHHHHHHHH
Confidence 569999999999999999999988532 333332100 01122 1234444443
Q ss_pred ccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeC
Q 005663 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~t 466 (684)
...........|++|||+|.+... .+++||+.||. ...+++||++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEe---------------------p~~~~~~Il~ 144 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEE---------------------PPAETWFFLA 144 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTS---------------------CCTTEEEEEE
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 322111245689999999999877 89999999982 1234566665
Q ss_pred CCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHH
Q 005663 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~ 546 (684)
++.. ..+.|.+++|.. ++.|.+++++++.
T Consensus 145 t~~~--------------------------------------------------~~l~~ti~SRc~-~~~~~~~~~~~~~ 173 (334)
T 1a5t_A 145 TREP--------------------------------------------------ERLLATLRSRCR-LHYLAPPPEQYAV 173 (334)
T ss_dssp ESCG--------------------------------------------------GGSCHHHHTTSE-EEECCCCCHHHHH
T ss_pred eCCh--------------------------------------------------HhCcHHHhhcce-eeeCCCCCHHHHH
Confidence 5411 125688888985 7999999999998
Q ss_pred HHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHH
Q 005663 547 QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLL 599 (684)
Q Consensus 547 ~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iI 599 (684)
+++... ..+++++++.+++.+ ++..|...+++
T Consensus 174 ~~L~~~------------------~~~~~~~~~~l~~~s---~G~~r~a~~~l 205 (334)
T 1a5t_A 174 TWLSRE------------------VTMSQDALLAALRLS---AGSPGAALALF 205 (334)
T ss_dssp HHHHHH------------------CCCCHHHHHHHHHHT---TTCHHHHHHTT
T ss_pred HHHHHh------------------cCCCHHHHHHHHHHc---CCCHHHHHHHh
Confidence 877641 157888888888863 33455544443
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.33 E-value=1.7e-11 Score=143.38 Aligned_cols=207 Identities=19% Similarity=0.271 Sum_probs=131.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005663 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l--- 354 (684)
.++|++..++.+...+.. ..+.++||+||||||||++|+++++.+
T Consensus 187 ~~iGr~~~i~~l~~~l~~--------------------------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCR--------------------------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp CCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CccCCHHHHHHHHHHHhc--------------------------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 479999999998887741 013789999999999999999999887
Q ss_pred -------CCCEEEEecccccc-CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHH
Q 005663 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq 426 (684)
+..++.+++..+.. ..|.|.. +..+..++.... ...++||||||+|.+...+.. +.....++
T Consensus 235 ~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~----~~~~~iL~IDEi~~l~~~~~~-----~~~~~~~~ 304 (758)
T 1r6b_X 235 DVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAA-----SGGQVDAA 304 (758)
T ss_dssp CSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHS----SSSCEEEEETTTTTTTTSCCS-----SSCHHHHH
T ss_pred CCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHH----hcCCeEEEEechHHHhhcCCC-----CcchHHHH
Confidence 55688888877653 4566654 566666665432 235689999999999765221 11122355
Q ss_pred HHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhh
Q 005663 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~ 506 (684)
+.|..+++ ..++.+|++++..+
T Consensus 305 ~~L~~~l~-----------------------~~~~~~I~at~~~~----------------------------------- 326 (758)
T 1r6b_X 305 NLIKPLLS-----------------------SGKIRVIGSTTYQE----------------------------------- 326 (758)
T ss_dssp HHHSSCSS-----------------------SCCCEEEEEECHHH-----------------------------------
T ss_pred HHHHHHHh-----------------------CCCeEEEEEeCchH-----------------------------------
Confidence 55555554 12345566554211
Q ss_pred hhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcC
Q 005663 507 SSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 507 ~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~ 586 (684)
+...+ ...|.|.+||+ .+.+.+++.++..+|+... ...|.... .+.+++++++.++..+.
T Consensus 327 --~~~~~--------~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l----~~~~~~~~-----~v~~~~~al~~~~~~s~ 386 (758)
T 1r6b_X 327 --FSNIF--------EKDRALARRFQ-KIDITEPSIEETVQIINGL----KPKYEAHH-----DVRYTAKAVRAAVELAV 386 (758)
T ss_dssp --HHCCC--------CCTTSSGGGEE-EEECCCCCHHHHHHHHHHH----HHHHHHHH-----TCCCCHHHHHHHHHHHH
T ss_pred --Hhhhh--------hcCHHHHhCce-EEEcCCCCHHHHHHHHHHH----HHHHHHhc-----CCCCCHHHHHHHHHHhh
Confidence 00001 13478899998 6999999999999999763 33333221 46689999988887532
Q ss_pred ---CCCCChHHHHHHHHHHHH
Q 005663 587 ---SKNTGARGLRSLLENILM 604 (684)
Q Consensus 587 ---~~~~GAR~Lr~iIe~~l~ 604 (684)
....-...+..++..+..
T Consensus 387 ~~i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 387 KYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp HHCTTSCTTHHHHHHHHHHHH
T ss_pred hhcccccCchHHHHHHHHHHH
Confidence 122222345555555543
No 83
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.30 E-value=3.7e-12 Score=120.45 Aligned_cols=117 Identities=26% Similarity=0.320 Sum_probs=76.8
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005663 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l-- 354 (684)
+.++|++.+++.+...+.. ..+.++||+||||||||++|+++++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred chhhcchHHHHHHHHHHhC--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3479999999888877630 012689999999999999999999987
Q ss_pred --------CCCEEEEecccccc-CCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHH
Q 005663 355 --------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 355 --------~~pfv~v~~s~l~~-sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~v 425 (684)
+.+++.+++..+.. ..+.|.. ...+..++.... ....+.+|||||+|.+...+....... .+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~~~~~~-----~~ 140 (187)
T 2p65_A 70 GDVPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQ---DAEGQVVMFIDEIHTVVGAGAVAEGAL-----DA 140 (187)
T ss_dssp TCSCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHH---HTTTSEEEEETTGGGGSSSSSSCTTSC-----CT
T ss_pred cCCcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHH---hcCCceEEEEeCHHHhcccccccccch-----HH
Confidence 67788888876542 2233322 333444433221 112456999999999975422111111 27
Q ss_pred HHHHHHHHh
Q 005663 426 QQALLKMLE 434 (684)
Q Consensus 426 q~~LL~~LE 434 (684)
++.|+.+++
T Consensus 141 ~~~l~~~~~ 149 (187)
T 2p65_A 141 GNILKPMLA 149 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 788888887
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=1.4e-11 Score=129.96 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=97.9
Q ss_pred ChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh------
Q 005663 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV------ 354 (684)
Q Consensus 281 GQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l------ 354 (684)
||+++++.|...+.+. . ..++||+||||+|||++|+++|+.+
T Consensus 1 g~~~~~~~L~~~i~~~-------------------------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~ 48 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------------------------E-GISILINGEDLSYPREVSLELPEYVEKFPPK 48 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------------------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCC
T ss_pred ChHHHHHHHHHHHHCC-------------------------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhcc
Confidence 7888899888887410 0 1689999999999999999999864
Q ss_pred CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
...++.++++.- ..+.+ .+++++..+..........|++|||+|.+... .+++||+.||
T Consensus 49 ~~d~~~l~~~~~----~~~id---~ir~li~~~~~~p~~~~~kvviIdead~lt~~--------------a~naLLk~LE 107 (305)
T 2gno_A 49 ASDVLEIDPEGE----NIGID---DIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ--------------AANAFLKALE 107 (305)
T ss_dssp TTTEEEECCSSS----CBCHH---HHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH--------------HHHHTHHHHH
T ss_pred CCCEEEEcCCcC----CCCHH---HHHHHHHHHhhccccCCceEEEeccHHHhCHH--------------HHHHHHHHHh
Confidence 346777776421 22322 23344333221111234679999999999877 8999999999
Q ss_pred cceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhhhhhhcc
Q 005663 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVK 514 (684)
Q Consensus 435 g~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~ 514 (684)
. ...+++||++++..
T Consensus 108 e---------------------p~~~t~fIl~t~~~-------------------------------------------- 122 (305)
T 2gno_A 108 E---------------------PPEYAVIVLNTRRW-------------------------------------------- 122 (305)
T ss_dssp S---------------------CCTTEEEEEEESCG--------------------------------------------
T ss_pred C---------------------CCCCeEEEEEECCh--------------------------------------------
Confidence 2 12346666655411
Q ss_pred chhHHhcCCChhhhcccceEEEecccCHHHHHHHHhc
Q 005663 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 515 ~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
..+.|.+.+| ++.|.+++++++.+.+..
T Consensus 123 ------~kl~~tI~SR---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 123 ------HYLLPTIKSR---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp ------GGSCHHHHTT---SEEEECCCCHHHHHHHHH
T ss_pred ------HhChHHHHce---eEeCCCCCHHHHHHHHHH
Confidence 1356889999 799999999999998875
No 85
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.26 E-value=4.4e-12 Score=148.67 Aligned_cols=169 Identities=23% Similarity=0.312 Sum_probs=106.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l---- 354 (684)
|+|+++.++.+...+.. ..+.++||+||||||||++|+++|+.+
T Consensus 182 iiG~~~~i~~l~~~l~~--------------------------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~ 229 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSR--------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNE 229 (758)
T ss_dssp CCCCHHHHHHHHHHHHC--------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSC
T ss_pred ccCchHHHHHHHHHHhC--------------------------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 79999999999988751 012789999999999999999999997
Q ss_pred ------CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchhhcccccCCCCchHHHHHH
Q 005663 355 ------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 355 ------~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~ 428 (684)
+.+++.+++ ...|.|+. +..+..++..+. ...++||||| ... + .++.
T Consensus 230 ~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~----~~~~~iLfiD----~~~---------~-----~~~~ 282 (758)
T 3pxi_A 230 VPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI---------D-----ASNI 282 (758)
T ss_dssp SCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C---------------------
T ss_pred CChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHH----hcCCEEEEEc----Cch---------h-----HHHH
Confidence 778888888 24466654 445555555432 2467899999 111 1 7788
Q ss_pred HHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCCCcCcccccccccCCCchhhhhhh
Q 005663 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ 508 (684)
|+..|+. .++.+|+++|..+..+.+
T Consensus 283 L~~~l~~-----------------------~~v~~I~at~~~~~~~~~-------------------------------- 307 (758)
T 3pxi_A 283 LKPSLAR-----------------------GELQCIGATTLDEYRKYI-------------------------------- 307 (758)
T ss_dssp -CCCTTS-----------------------SSCEEEEECCTTTTHHHH--------------------------------
T ss_pred HHHHHhc-----------------------CCEEEEeCCChHHHHHHh--------------------------------
Confidence 8887771 125567776643321111
Q ss_pred hhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHh
Q 005663 509 LMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 509 ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~ 584 (684)
.+.|.|.+||. +|.+++++.+++.+|+...+. +|.. ...+.++++++..+++.
T Consensus 308 -------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~----~~~~-----~~~~~i~~~al~~~~~~ 360 (758)
T 3pxi_A 308 -------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLRD----RYEA-----HHRVSITDDAIEAAVKL 360 (758)
T ss_dssp -------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTT----TSGG-----GSSCSCCHHHHHHHHHH
T ss_pred -------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHH----HHHH-----hcCCCCCHHHHHHHHHH
Confidence 24588999995 699999999999999975322 1111 12455778887777664
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.01 E-value=5.2e-09 Score=111.93 Aligned_cols=220 Identities=19% Similarity=0.154 Sum_probs=125.4
Q ss_pred ccccChHHHHHHHHHHH-HhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEE--EccCCCcHHHHHHHHHHH
Q 005663 277 KFVIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILL--MGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 277 ~~ViGQd~aK~~L~~av-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL--~GPpGTGKT~LAkaLA~~ 353 (684)
..++|.+..++.|...+ .. ...+. ...+..+++ +||+|+|||++++.+++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~----~~~~~----------------------~~~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNR----LLSGA----------------------GLSDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHH----HHTSS----------------------CBCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHH----HhcCC----------------------CCCCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 34799999999888877 41 10000 001268889 999999999999999877
Q ss_pred h---------CCCEEEEeccccccC-----------C----ccccchHHHHHHHHhcccchHHhhcCCEEEEccccccch
Q 005663 354 V---------NVPFVIADATTLTQA-----------G----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 354 l---------~~pfv~v~~s~l~~s-----------g----yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~ 409 (684)
+ +.+++.++|...... + ..|......+..+...- -....+.+|+|||++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 76 VSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL---YVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp HHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH---HHHTCEEEEEEESTHHHHS
T ss_pred HHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEEeCHHHHhh
Confidence 6 446778887532110 0 00111111111111110 0113457999999999865
Q ss_pred hhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEee--ccEEEEeCCCCcCHHHHHHhccccCCCCc
Q 005663 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT--KDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~Idt--sNiifI~tgn~~dLek~i~~r~~~~~lGf 487 (684)
.+. ....++..|++.++... .+. .++.+|++++..++.+.+..
T Consensus 153 ~~~--------~~~~~l~~l~~~~~~~~------------------~~~~~~~v~lI~~~~~~~~~~~l~~--------- 197 (412)
T 1w5s_A 153 SPR--------IAAEDLYTLLRVHEEIP------------------SRDGVNRIGFLLVASDVRALSYMRE--------- 197 (412)
T ss_dssp CTT--------SCHHHHHHHHTHHHHSC------------------CTTSCCBEEEEEEEEETHHHHHHHH---------
T ss_pred ccC--------cchHHHHHHHHHHHhcc------------------cCCCCceEEEEEEeccccHHHHHhh---------
Confidence 200 01126777777776100 011 34667766642222111110
Q ss_pred CcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHhhC
Q 005663 488 GAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~~~ 567 (684)
..+.+.+|+...+.|.+++.+++.+++...+...
T Consensus 198 -----------------------------------~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~----------- 231 (412)
T 1w5s_A 198 -----------------------------------KIPQVESQIGFKLHLPAYKSRELYTILEQRAELG----------- 231 (412)
T ss_dssp -----------------------------------HCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH-----------
T ss_pred -----------------------------------hcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc-----------
Confidence 0133445555559999999999999887532110
Q ss_pred CceeecCHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHH
Q 005663 568 GVKLHFTENALRLIAKKAISKN---TGARGLRSLLENILMDA 606 (684)
Q Consensus 568 gv~l~iteeAl~~La~~a~~~~---~GAR~Lr~iIe~~l~~a 606 (684)
+....+++++++.+++.+.... +..|.+..+++.++..+
T Consensus 232 ~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 232 LRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp BCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 1123588999999998754322 56788888877665544
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.72 E-value=2.4e-08 Score=129.84 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=98.2
Q ss_pred cceEEEEccCCCcHHHHHH-HHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhccc---chH----HhhcCCEEEE
Q 005663 330 KSNILLMGPTGSGKTLLAK-TLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNV----AAAQQGIVYI 401 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAk-aLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~---~~v----~~a~~gVLfI 401 (684)
..++||+||||||||++|+ ++++..+.+++.++++..+.+. ...+.+...+.... +.+ ....++||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~----~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTE----HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHH----HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHH----HHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 4799999999999999994 4555556778889988765321 11122222211110 100 0234579999
Q ss_pred ccccccchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccc
Q 005663 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (684)
Q Consensus 402 DEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~ 481 (684)
|||+....++. ....+++.|.++|| .|+..+.+.. ..+...++.+|+|.|..+
T Consensus 1343 DEinmp~~d~y--------g~q~~lelLRq~le--------~gg~yd~~~~-~~~~~~~i~lIaA~Npp~---------- 1395 (2695)
T 4akg_A 1343 DEINLPKLDKY--------GSQNVVLFLRQLME--------KQGFWKTPEN-KWVTIERIHIVGACNPPT---------- 1395 (2695)
T ss_dssp ETTTCSCCCSS--------SCCHHHHHHHHHHH--------TSSEECTTTC-CEEEEESEEEEEEECCTT----------
T ss_pred ccccccccccc--------CchhHHHHHHHHHh--------cCCEEEcCCC-cEEEecCEEEEEecCCCc----------
Confidence 99997443311 11237888888888 2222222211 134457899998877421
Q ss_pred cCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHH
Q 005663 482 DSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 482 ~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
+-| .+.+.|.|++|+ .++.++.++.+++.+|+...+..
T Consensus 1396 --~gG---------------------------------R~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1396 --DPG---------------------------------RIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp --STT---------------------------------CCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred --cCC---------------------------------CccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 001 013568999999 58999999999999999875443
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.59 E-value=8.7e-08 Score=91.71 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=50.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEeccccccCCccccchHHHHHHHHhccc---chHHhhcCCEEEEcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l----~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~---~~v~~a~~gVLfIDE 403 (684)
.+++|+||||||||+|+++++..+ +...+.+++.++.. .+...+.... ..-....+.+|+|||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF----------RLKHLMDEGKDTKFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH----------HHHHHHHHTCCSHHHHHHHTCSEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH----------HHHHHhcCchHHHHHHHhcCCCEEEEeC
Confidence 689999999999999999999877 44555566655431 0111111000 001123568999999
Q ss_pred ccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 404 Idkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
++..... ...++.|.++++
T Consensus 109 ~~~~~~~------------~~~~~~l~~ll~ 127 (180)
T 3ec2_A 109 LGSERLS------------DWQRELISYIIT 127 (180)
T ss_dssp CSSSCCC------------HHHHHHHHHHHH
T ss_pred CCCCcCC------------HHHHHHHHHHHH
Confidence 9853221 115667777776
No 89
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.58 E-value=1.5e-06 Score=90.25 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=41.7
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
++|.++..+.|...+.. ...++++||+|+|||+|++.+++..+ .
T Consensus 14 ~~gR~~el~~L~~~l~~----------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~ 57 (350)
T 2qen_A 14 IFDREEESRKLEESLEN----------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP--G 57 (350)
T ss_dssp SCSCHHHHHHHHHHHHH----------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--E
T ss_pred cCChHHHHHHHHHHHhc----------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--c
Confidence 68999999988887740 15789999999999999999998875 6
Q ss_pred EEEeccc
Q 005663 359 VIADATT 365 (684)
Q Consensus 359 v~v~~s~ 365 (684)
+.+++..
T Consensus 58 ~~~~~~~ 64 (350)
T 2qen_A 58 ILIDCRE 64 (350)
T ss_dssp EEEEHHH
T ss_pred EEEEeec
Confidence 6777654
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.37 E-value=2.8e-07 Score=89.52 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=32.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~ 367 (684)
.+++|+||||||||++|+++++.+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 689999999999999999999888 5678888887653
No 91
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.27 E-value=2.4e-06 Score=90.23 Aligned_cols=167 Identities=14% Similarity=0.111 Sum_probs=103.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~----~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdk 406 (684)
..+||+||+|+||++.++.+++.+. .++..+. +. + ..+....+.. ....+ -.+..-||+|||++.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~--~--~~~~~~l~~~-~~~~p---lf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---ID--P--NTDWNAIFSL-CQAMS---LFASRQTLLLLLPEN 87 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---CC--T--TCCHHHHHHH-HHHHH---HCCSCEEEEEECCSS
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---ec--C--CCCHHHHHHH-hcCcC---CccCCeEEEEECCCC
Confidence 6889999999999999999987662 1222221 11 0 1222222222 11111 123457999999999
Q ss_pred -cchhhcccccCCCCchHHHHHHHHHHHhcceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHHHhccccCCC
Q 005663 407 -ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 407 -l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i~~r~~~~~l 485 (684)
+..+ .+++|++.+|. ...+++||++++..+ +
T Consensus 88 kl~~~--------------~~~aLl~~le~---------------------p~~~~~~il~~~~~~--~----------- 119 (343)
T 1jr3_D 88 GPNAA--------------INEQLLTLTGL---------------------LHDDLLLIVRGNKLS--K----------- 119 (343)
T ss_dssp CCCTT--------------HHHHHHHHHTT---------------------CBTTEEEEEEESCCC--T-----------
T ss_pred CCChH--------------HHHHHHHHHhc---------------------CCCCeEEEEEcCCCC--h-----------
Confidence 8766 89999999982 012244444332100 0
Q ss_pred CcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchHHHHHHHHHHHHh
Q 005663 486 GFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 Gf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~~~ 565 (684)
..... .+.+.+.+|.. ++.|.+++.+++.+.+...+ .
T Consensus 120 -----------------~~~~~--------------k~~~~i~sr~~-~~~~~~l~~~~l~~~l~~~~-----------~ 156 (343)
T 1jr3_D 120 -----------------AQENA--------------AWFTALANRSV-QVTCQTPEQAQLPRWVAARA-----------K 156 (343)
T ss_dssp -----------------TTTTS--------------HHHHHHTTTCE-EEEECCCCTTHHHHHHHHHH-----------H
T ss_pred -----------------hhHhh--------------HHHHHHHhCce-EEEeeCCCHHHHHHHHHHHH-----------H
Confidence 00000 12244555653 79999999999888776522 2
Q ss_pred hCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005663 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 566 ~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.. .+.+++++++.|++.+ +++.|.+.+.++++..
T Consensus 157 ~~--g~~i~~~a~~~l~~~~---~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 157 QL--NLELDDAANQVLCYCY---EGNLLALAQALERLSL 190 (343)
T ss_dssp HT--TCEECHHHHHHHHHSS---TTCHHHHHHHHHHHHH
T ss_pred Hc--CCCCCHHHHHHHHHHh---chHHHHHHHHHHHHHH
Confidence 22 5679999999999963 4567999999998765
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.27 E-value=1.1e-05 Score=105.60 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=52.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.+.++.||+|||||++++++|+.++.+++.++|++-... ..+...+..+ ...++++++|||+++.++
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~--------~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY--------QVLSRLLVGI-----TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh--------hHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence 478899999999999999999999999999999865431 2223333221 124689999999999887
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.27 E-value=1.7e-06 Score=81.48 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=52.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEcccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl 407 (684)
..++|+||+|+|||+|+++++..+ +...+.+++.++... .+ ...+.+|+|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------~~---------~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------DA---------AFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------GG---------GGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------HH---------HhCCCEEEEeCcccc
Confidence 688999999999999999999887 666777887766522 00 124579999999987
Q ss_pred chhhcccccCCCCchHHHHHHHHHHHh
Q 005663 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
... .++.|+.+++
T Consensus 96 ~~~--------------~~~~l~~li~ 108 (149)
T 2kjq_A 96 GNE--------------EQALLFSIFN 108 (149)
T ss_dssp CSH--------------HHHHHHHHHH
T ss_pred ChH--------------HHHHHHHHHH
Confidence 655 4677777776
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.26 E-value=4.6e-06 Score=86.61 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=31.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..++++||+|+|||+|++.+++.+....+.+++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 378999999999999999999988777888887643
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.15 E-value=2.2e-06 Score=112.63 Aligned_cols=151 Identities=20% Similarity=0.272 Sum_probs=94.4
Q ss_pred ceEEEEccCCCcHHHHHHH-HHHHhCCCEEEEeccccccCCccccchHHHHHHHHhc----c--c--chHH----hhcCC
Q 005663 331 SNILLMGPTGSGKTLLAKT-LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTV----S--D--YNVA----AAQQG 397 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAka-LA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~----a--~--~~v~----~a~~g 397 (684)
.++||+||||||||.+++. +++..+.+++.++++.-+.+ ..+...+.. . + +.+- ..+..
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 6899999999999977654 45444667888999876532 222222221 1 1 1111 12346
Q ss_pred EEEEccccccchhhcccccCCCCchHHHHHHHHHHHh-cceeeecCCCcccCCCCCceEEeeccEEEEeCCCCcCHHHHH
Q 005663 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 398 VLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsNiifI~tgn~~dLek~i 476 (684)
|+||||++.-..+. .....+...|.++|| |+.. +.... -.+...++.||+|.|..+
T Consensus 1377 VlFiDDiNmp~~D~--------yGtQ~~ielLrqlld~~g~y---------d~~~~-~~~~i~d~~~vaamnPp~----- 1433 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDK--------YGTQRVITFIRQMVEKGGFW---------RTSDH-TWIKLDKIQFVGACNPPT----- 1433 (3245)
T ss_dssp EEEETTTTCCCCCT--------TSCCHHHHHHHHHHHHSEEE---------ETTTT-EEEEESSEEEEEEECCTT-----
T ss_pred EEEecccCCCCccc--------cccccHHHHHHHHHHcCCeE---------ECCCC-eEEEecCeEEEEEcCCCC-----
Confidence 99999999754431 111238888899998 3332 22111 234557888998866321
Q ss_pred HhccccCCCCcCcccccccccCCCchhhhhhhhhhhccchhHHhcCCChhhhcccceEEEecccCHHHHHHHHhchH
Q 005663 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVKSSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 477 ~~r~~~~~lGf~~~v~~~~~~~~~~~~~~~~~ll~~v~~~dli~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l 553 (684)
+-| .+.+.|.|++||. ++.++.++.+++..|....+
T Consensus 1434 -------~gG---------------------------------r~~l~~Rf~r~F~-vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1434 -------DAG---------------------------------RVQLTHRFLRHAP-ILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp -------STT---------------------------------CCCCCHHHHTTCC-EEECCCCCHHHHHHHHHHHH
T ss_pred -------CCC---------------------------------CccCCHHHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence 000 0136688999998 58999999999999987543
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.12 E-value=6.3e-06 Score=85.43 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.+++|+||||||||++|++||+.+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5799999999999999999999763
No 97
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.09 E-value=7.4e-06 Score=103.00 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=68.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc-----------CCcccc----chHHHHHHHHhcccchHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGE----DVESILYKLLTVSDYNVA 392 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~-----------sgyvG~----~~~~~l~~l~~~a~~~v~ 392 (684)
+.+|++||||||||+||++++... +.|-+.++.....+ ..|+++ + ++.++.++..+ .
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~-e~~l~~~~~~a----r 1157 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEICDALA----R 1157 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHH----H
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccch-HHHHHHHHHHH----H
Confidence 459999999999999999997655 56666677665321 346666 4 56677766543 2
Q ss_pred hhcCCEEEEccccccchhhcccccCCC---CchHHHHHHHHHHHhc
Q 005663 393 AAQQGIVYIDEVDKITKKAESLNISRD---VSGEGVQQALLKMLEG 435 (684)
Q Consensus 393 ~a~~gVLfIDEIdkl~~~r~~~~~~~d---~~~e~vq~~LL~~LEg 435 (684)
...+++||+||++.|.+.++..+...+ .-.+++.+++|.-|++
T Consensus 1158 ~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1158 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 467899999999999998542211122 1233467777777774
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.03 E-value=4.8e-07 Score=95.20 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=30.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~----~pfv~v~~s~l~ 367 (684)
.+++|+||||||||+||+++|..+. .+++.+++.++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 7899999999999999999987664 677777776553
No 99
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.87 E-value=9.1e-06 Score=81.31 Aligned_cols=77 Identities=12% Similarity=0.298 Sum_probs=49.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.++||+||||||||++|.++|+.+....+....+. ..+ . +.. .....+|+|||++.....
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f-~----------l~~------l~~~kIiiLDEad~~~~~ 118 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF-W----------LEP------LTDTKVAMLDDATTTCWT 118 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG-G----------GGG------GTTCSSEEEEEECHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh-h----------hcc------cCCCCEEEEECCCchhHH
Confidence 57999999999999999999999865432211100 000 0 011 012359999999853211
Q ss_pred hcccccCCCCchHHHHHHHHHHHhcceeee
Q 005663 411 AESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~V 440 (684)
.+...+..+|||..+.+
T Consensus 119 -------------~~d~~lrn~ldG~~~~i 135 (212)
T 1tue_A 119 -------------YFDTYMRNALDGNPISI 135 (212)
T ss_dssp -------------HHHHHCHHHHHTCCEEE
T ss_pred -------------HHHHHHHHHhCCCcccH
Confidence 25678888999875543
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.68 E-value=2.8e-05 Score=82.78 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=43.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~--pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~ 408 (684)
..++|+||||||||+||.++|...+. .|+.....+.. ..+. .+.+..+..+.+. +.. .+ +|+|||++.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v-~~~~-~~le~~l~~i~~~----l~~-~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL-SGYN-TDFNVFVDDIARA----MLQ-HR-VIVIDSLKNVI 195 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSS-TTCB-CCHHHHHHHHHHH----HHH-CS-EEEEECCTTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhh-hhhh-cCHHHHHHHHHHH----Hhh-CC-EEEEecccccc
Confidence 56799999999999999999876543 36665222221 1111 2223444333322 111 23 99999999986
Q ss_pred hh
Q 005663 409 KK 410 (684)
Q Consensus 409 ~~ 410 (684)
..
T Consensus 196 ~~ 197 (331)
T 2vhj_A 196 GA 197 (331)
T ss_dssp --
T ss_pred cc
Confidence 64
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.66 E-value=0.00023 Score=94.08 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=51.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccchh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
.+..+.||+|||||++++.+|+.+|.+++.++|++-.. ...+...+... ...++..++|||+++..+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d--------~~~~g~i~~G~-----~~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD--------LQAMSRIFVGL-----CQCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC--------HHHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC--------HHHHHHHHhhH-----hhcCcEEEehhhhcCCHH
Confidence 35578999999999999999999999999999986542 12233333221 134689999999999887
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.66 E-value=4e-05 Score=75.86 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=45.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--------C-CCEEEEeccccccCCcc-------------ccc-hHHHHHHHHhcc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV--------N-VPFVIADATTLTQAGYV-------------GED-VESILYKLLTVS 387 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l--------~-~pfv~v~~s~l~~sgyv-------------G~~-~~~~l~~l~~~a 387 (684)
...|++|+||||||++|..++... + .+++..++.++.. +++ ++. ....+.+.+..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI-PHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS-CCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc-cccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 577999999999999998864332 3 6666677766642 221 110 00122222110
Q ss_pred cchHHhhcCCEEEEccccccchh
Q 005663 388 DYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 388 ~~~v~~a~~gVLfIDEIdkl~~~ 410 (684)
....++||+|||++.+.+.
T Consensus 84 ----~~~~~~vliIDEAq~l~~~ 102 (199)
T 2r2a_A 84 ----PENIGSIVIVDEAQDVWPA 102 (199)
T ss_dssp ----GGGTTCEEEETTGGGTSBC
T ss_pred ----cccCceEEEEEChhhhccC
Confidence 1234789999999999654
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.31 E-value=0.00027 Score=90.10 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=58.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---CCccc-----------cchHHHHHHHHhcccchHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVG-----------EDVESILYKLLTVSDYNVA 392 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~---sgyvG-----------~~~~~~l~~l~~~a~~~v~ 392 (684)
+.+++|+||||||||+||.+++... +...+.+++..... ....| ...+..+..+. ..++
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~----~lvr 1502 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD----ALAR 1502 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH----HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHH----HHHh
Confidence 4799999999999999999996655 45566667654321 01111 01122222222 2344
Q ss_pred hhcCCEEEEccccccchhhcc-cccC-CCCc-hHHHHHHHHHHHh
Q 005663 393 AAQQGIVYIDEVDKITKKAES-LNIS-RDVS-GEGVQQALLKMLE 434 (684)
Q Consensus 393 ~a~~gVLfIDEIdkl~~~r~~-~~~~-~d~~-~e~vq~~LL~~LE 434 (684)
...+.+|+|||++.+.+.+.. +..+ .... ++++...+|.-|.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~ 1547 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 1547 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHH
Confidence 567899999999988774321 1111 1222 3445566665554
No 104
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.19 E-value=0.0002 Score=68.15 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=28.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
..++|+|+||+|||++|+.||+.++.+++..|
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 68999999999999999999999999887543
No 105
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=97.18 E-value=0.0011 Score=58.19 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=58.2
Q ss_pred cccCHHHHHHHHhchHHHHHHHHHHHHhhCCceeecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005663 538 LALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 538 ~pLs~eel~~Il~~~l~~L~kqy~~~~~~~gv~l~iteeAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+.|+++|..+|+++++ +.+|.. ........+.|+++|+..|++. |+...|+|+|++.|.+++..+..++..
T Consensus 1 sGYt~~EK~~IAk~~L--iPkql~-~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~~ 71 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHL--LPKQIE-RNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLLL 71 (94)
T ss_dssp CCCCHHHHHHHHHHTH--HHHHHH-HTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc--cHHHHH-HhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999863 444433 3455556799999999999997 999999999999999999998887764
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.18 E-value=0.00032 Score=66.09 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=30.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s 364 (684)
..++|.|+||+|||++|++|++.++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 5789999999999999999999999888876654
No 107
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.14 E-value=0.0014 Score=72.14 Aligned_cols=89 Identities=21% Similarity=0.353 Sum_probs=50.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CC-CEEEEeccccccC---CccccchHHHHHHHHhcccc------------hH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NV-PFVIADATTLTQA---GYVGEDVESILYKLLTVSDY------------NV 391 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~-pfv~v~~s~l~~s---gyvG~~~~~~l~~l~~~a~~------------~v 391 (684)
.++++.|+||||||+++.+++..+ +. ..+.+..+..... ...|.. ...+..++..... ..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~-~~T~h~~~~~~~~~~~~~~~~~~~~~~ 124 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE-ASTIHSILKINPVTYEENVLFEQKEVP 124 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC-EEEHHHHHTEEEEECSSCEEEEECSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccc-hhhHHHHhccCcccccccchhcccccc
Confidence 489999999999999999998777 33 3444433322100 000000 0011122221100 00
Q ss_pred HhhcCCEEEEccccccchhhcccccCCCCchHHHHHHHHHHHh
Q 005663 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 392 ~~a~~gVLfIDEIdkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
......+|+|||+..+... .+..|++.+.
T Consensus 125 ~~~~~~~iiiDE~~~~~~~--------------~~~~l~~~~~ 153 (459)
T 3upu_A 125 DLAKCRVLICDEVSMYDRK--------------LFKILLSTIP 153 (459)
T ss_dssp CCSSCSEEEESCGGGCCHH--------------HHHHHHHHSC
T ss_pred cccCCCEEEEECchhCCHH--------------HHHHHHHhcc
Confidence 0123579999999998766 8888888876
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.14 E-value=0.00082 Score=65.21 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.-++++||+|+|||+++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999986665443
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.00027 Score=68.66 Aligned_cols=32 Identities=50% Similarity=0.750 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
..++|+||||+|||++++.||+.++.+++..|
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 57899999999999999999999998886433
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.06 E-value=0.0013 Score=63.57 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
.+.|+||+|+|||||++.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999886443
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.96 E-value=0.00048 Score=64.12 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
.|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 6789999999999999999999998886544
No 112
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.86 E-value=0.00056 Score=64.16 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=27.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
.+++|.|+||||||++|+.||+.++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 689999999999999999999999998864
No 113
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.85 E-value=0.00047 Score=65.20 Aligned_cols=29 Identities=41% Similarity=0.691 Sum_probs=26.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
.++|.|+||+|||++|+.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68999999999999999999999987753
No 114
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.83 E-value=0.00058 Score=64.92 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
..|+|.|+||+|||++|+.|++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 4689999999999999999999999887643
No 115
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.82 E-value=0.00066 Score=64.59 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=27.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..++|.|+||+|||++|+.|++.++.+++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 678999999999999999999999887754
No 116
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.81 E-value=0.00058 Score=64.78 Aligned_cols=30 Identities=43% Similarity=0.630 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..++|+|+||+|||++++.|++.++.+++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 679999999999999999999999877653
No 117
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.76 E-value=0.00066 Score=63.63 Aligned_cols=29 Identities=41% Similarity=0.819 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..+.|+||+|+||||+++.||+.++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 57899999999999999999999987554
No 118
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.73 E-value=0.001 Score=64.37 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
..|+|.|+||+|||++|+.|++.++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5789999999999999999999998877543
No 119
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.00089 Score=63.45 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..|+|.|+||+|||++|+.|++.++.+++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 67899999999999999999999987664
No 120
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.66 E-value=0.001 Score=67.53 Aligned_cols=32 Identities=41% Similarity=0.467 Sum_probs=28.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
.++|+||||+|||++|+.||+.++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999988876665
No 121
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.66 E-value=0.00078 Score=64.61 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=25.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH-hCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY-VNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~-l~~pfv 359 (684)
..++|+|+||||||++++.|++. ++.+++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 67999999999999999999998 676654
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.66 E-value=0.00095 Score=63.58 Aligned_cols=36 Identities=39% Similarity=0.522 Sum_probs=30.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..++|+||||+||||+++.|+...+.+.+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 578899999999999999999987777777776543
No 123
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.65 E-value=0.0047 Score=60.85 Aligned_cols=33 Identities=33% Similarity=0.447 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHH--HH--hCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLA--RY--VNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA--~~--l~~pfv~v~~ 363 (684)
..++|+||+|+|||+|++.++ .. -+...+.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 577899999999999999998 33 2444444444
No 124
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.63 E-value=0.00096 Score=63.57 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
..++|.|+||+|||++|+.|++.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5789999999999999999999998776543
No 125
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.62 E-value=0.00094 Score=61.65 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..++|.||||+|||++|+.| +.++.+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 46889999999999999999 888877654
No 126
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.59 E-value=0.0011 Score=65.18 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 6789999999999999999999998776543
No 127
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.58 E-value=0.0012 Score=63.82 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=26.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..|+|.|++|+||||+|+.|++.++.+++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 578999999999999999999999877654
No 128
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.58 E-value=0.001 Score=62.25 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..|+|.|+||+|||++|+.|++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 368999999999999999999999887653
No 129
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.51 E-value=0.0014 Score=61.03 Aligned_cols=30 Identities=37% Similarity=0.564 Sum_probs=26.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
.|+|.|+||+|||++|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 578999999999999999999999887643
No 130
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.49 E-value=0.0013 Score=62.82 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..|+|.|+||+|||++|+.|++.++.+++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 57899999999999999999999986554
No 131
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.49 E-value=0.0055 Score=59.41 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=25.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
..++|+||||+|||++++.++..+ +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 577899999999999999998554 445555543
No 132
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.48 E-value=0.016 Score=58.29 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~ 362 (684)
.-++++||+|+|||+++..++..+ +...+.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 677889999999999998887665 44555553
No 133
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.48 E-value=0.0017 Score=61.56 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..++|.|+||+||||+|+.|++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 57899999999999999999999986654
No 134
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.48 E-value=0.0017 Score=61.16 Aligned_cols=34 Identities=35% Similarity=0.541 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..++|+||+|+|||++++.|++.++..+ ++...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 5788999999999999999999887654 454443
No 135
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.48 E-value=0.0046 Score=70.39 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=24.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v 361 (684)
..+++.||||||||+++.+++..+ +.+.+.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 688999999999999999998765 4455444
No 136
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.47 E-value=0.0014 Score=63.87 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=26.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
.|+|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998776544
No 137
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.46 E-value=0.0014 Score=61.93 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=26.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..|+|.|+||+|||++|+.|++.++.+++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 578999999999999999999999876553
No 138
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.45 E-value=0.0012 Score=62.49 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..++|.|+||+||||+|+.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999886
No 139
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.45 E-value=0.014 Score=64.29 Aligned_cols=36 Identities=33% Similarity=0.346 Sum_probs=28.9
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
++..++++||+|+||||++..||..+ +.....+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 35788999999999999999998777 5566556654
No 140
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.45 E-value=0.0014 Score=61.79 Aligned_cols=29 Identities=41% Similarity=0.505 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..++|.|+||+|||++|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 57899999999999999999999998876
No 141
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.43 E-value=0.0016 Score=63.40 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=26.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
.|+|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998877544
No 142
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.40 E-value=0.0015 Score=61.10 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH-HhCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR-YVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~-~l~~ 356 (684)
..++|.|+||+|||++|+.|++ .++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 5689999999999999999998 4443
No 143
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.39 E-value=0.0017 Score=64.63 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
..|+|.|+||+|||++|+.||+.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 6799999999999999999999998776543
No 144
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.37 E-value=0.0058 Score=62.04 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=30.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH---hCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~---l~~pfv~v~~s~l 366 (684)
..|+|.|+||+|||++|+.|++. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 57899999999999999999998 6778776666544
No 145
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.36 E-value=0.0016 Score=64.34 Aligned_cols=30 Identities=20% Similarity=0.394 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..++|.|+||+|||++|+.||+.++.+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 578999999999999999999999876654
No 146
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.34 E-value=0.002 Score=65.16 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=31.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
..++|.|+||+|||++|+.|++.++.+++.++...+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 6889999999999999999999998666777776553
No 147
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.31 E-value=0.018 Score=55.56 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=28.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~ 365 (684)
..++|+||||+|||++++.++...+.+.+.++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 57789999999999999999875566677777654
No 148
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.30 E-value=0.002 Score=62.20 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
..|+|.|+||+|||++|+.|++.++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 5789999999999999999999998766543
No 149
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.30 E-value=0.0026 Score=61.64 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..+.|.||+|+|||++++.|++.++..+ ++...+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 6788999999999999999999986544 455444
No 150
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.30 E-value=0.0021 Score=63.28 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
..|+|.|+||+|||++|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5789999999999999999999998776544
No 151
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.27 E-value=0.0014 Score=64.54 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..|+|.||||+|||++|+.||+.++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 57899999999999999999999987554
No 152
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.27 E-value=0.0021 Score=64.78 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=27.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
..|+|.||||+||||+|+.|++.++.+++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 6899999999999999999999997766543
No 153
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.26 E-value=0.0052 Score=60.36 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH--h-------CCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY--V-------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~--l-------~~pfv~v~~s~ 365 (684)
..++|+||||+|||++++.++.. + +...+.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 57889999999999999999874 3 34566666654
No 154
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.25 E-value=0.0041 Score=58.87 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=31.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
..+.|.|++|+|||++++.|++.+ +.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 678899999999999999999988 888988886544
No 155
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.21 E-value=0.0025 Score=62.41 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
.++|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998777544
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.19 E-value=0.0095 Score=63.63 Aligned_cols=79 Identities=25% Similarity=0.269 Sum_probs=44.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccC---CccccchHH-------HHHHHHhcccchHHhhcCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVES-------ILYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~s---gyvG~~~~~-------~l~~l~~~a~~~v~~a~~g 397 (684)
..++|+||||+|||+||..++..+ +.+.+.++...-... ...|.+... .+.+.+......+......
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 568899999999999999997554 556666665432110 001111000 0111111111112233578
Q ss_pred EEEEccccccch
Q 005663 398 IVYIDEVDKITK 409 (684)
Q Consensus 398 VLfIDEIdkl~~ 409 (684)
+|+||++..+..
T Consensus 142 lIVIDsl~~l~~ 153 (349)
T 2zr9_A 142 IIVIDSVAALVP 153 (349)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcChHhhcc
Confidence 999999999874
No 157
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.16 E-value=0.0033 Score=65.22 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..++|.||||+||||+|+.|++.+...++.+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 678999999999999999999988555667776444
No 158
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.16 E-value=0.0043 Score=58.72 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=27.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005663 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~ 362 (684)
.+.|.|++|+||||+|+.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88887665
No 159
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.14 E-value=0.0031 Score=66.97 Aligned_cols=35 Identities=40% Similarity=0.566 Sum_probs=30.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~ 365 (684)
..++|+||||+|||++|+.||+.++.+++.+|.-.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 57899999999999999999999998888777543
No 160
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.14 E-value=0.0035 Score=62.08 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=27.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
.++|.||||+||+|.|+.||+.++.+. ++..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 478999999999999999999997755 455444
No 161
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.12 E-value=0.014 Score=58.55 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s 364 (684)
..++++||+|+|||.+|.+++..++.+.+.+-.+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589999999999999999988887776665544
No 162
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.09 E-value=0.0037 Score=59.70 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=25.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
.++|.|++|+||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999987654
No 163
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.08 E-value=0.0041 Score=60.81 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..+.|.||+|+||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 47889999999999999999999987654
No 164
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.05 E-value=0.004 Score=62.36 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..|+|.||||+||+|.|+.|++.++.+. ++..++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdl 63 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDL 63 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHH
Confidence 5778899999999999999999997654 444433
No 165
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.05 E-value=0.036 Score=56.03 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
.++++.|+||||||++|-.+|..+ |...+.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 689999999999999999998766 556655555
No 166
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.04 E-value=0.0036 Score=67.77 Aligned_cols=61 Identities=25% Similarity=0.234 Sum_probs=40.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccCCccccchHHHHHHHHhcccchHHhhcCCEEEEccccccch
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~~sgyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIdkl~~ 409 (684)
..++|+||||+|||+++++++..++..++.++... .+ ... .+... .+..++++||++.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~---~~------~~~---~lg~~------~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL---DR------LNF---ELGVA------IDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT---TT------HHH---HHGGG------TTCSCEEETTCCCSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc---hh------HHH---HHHHh------cchhHHHHHHHHHHHH
Confidence 68899999999999999999998876554322211 10 000 11111 1346789999998765
No 167
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.99 E-value=0.0063 Score=58.91 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=28.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
..+.|.||+|+|||+++++|++.+ +...+.++...+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 678899999999999999999988 444345665544
No 168
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.96 E-value=0.0028 Score=59.84 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=22.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.|+|.|+||+||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999885
No 169
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.93 E-value=0.0034 Score=60.50 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
.+.|.|++|+|||++++.|++ ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 578999999999999999999 87666543
No 170
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.91 E-value=0.0035 Score=62.03 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
.++|.|+||+||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 47899999999999999999999865543
No 171
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.91 E-value=0.023 Score=62.74 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=30.5
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
++..++++|++|+||||++..||..+ +.....+++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 35789999999999999999998777 556666676543
No 172
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.90 E-value=0.018 Score=61.82 Aligned_cols=75 Identities=21% Similarity=0.188 Sum_probs=45.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccC------C------c--cccchHHHHHHHHhcccchHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA------G------Y--VGEDVESILYKLLTVSDYNVAA 393 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~s------g------y--vG~~~~~~l~~l~~~a~~~v~~ 393 (684)
..++|+||||+|||+||..++..+ +.+.+.++....... + + .....+..+.. ....+..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~----~~~l~~~ 137 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI----VDELVRS 137 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH----HHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH----HHHHhhh
Confidence 567899999999999999997665 556667776542110 0 0 01111222111 1111222
Q ss_pred hcCCEEEEccccccch
Q 005663 394 AQQGIVYIDEVDKITK 409 (684)
Q Consensus 394 a~~gVLfIDEIdkl~~ 409 (684)
....+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 4567999999999876
No 173
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.88 E-value=0.0066 Score=57.73 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=25.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~ 362 (684)
|.|.|++|+||||+++.|++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999998 88876544
No 174
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.87 E-value=0.0052 Score=58.88 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-~~pfv~v~ 362 (684)
..|.|.|++|+||||+++.|++.+ +.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 578999999999999999999998 46776554
No 175
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.85 E-value=0.0049 Score=59.15 Aligned_cols=29 Identities=31% Similarity=0.607 Sum_probs=26.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
.+.|.|++|+|||++|+.||+.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 68899999999999999999999987764
No 176
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.80 E-value=0.0037 Score=66.83 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=30.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~ 365 (684)
..++|+||+|+|||+||..||+.++.+++..|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 47889999999999999999999988777666543
No 177
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.76 E-value=0.0052 Score=58.78 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=25.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..|.|.|++|+|||++|+.|++. +.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 67899999999999999999998 766653
No 178
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.73 E-value=0.022 Score=61.02 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+++.||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 678999999999999999998877
No 179
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.72 E-value=0.0067 Score=58.23 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
..|+|.|+||+|||++|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999998763
No 180
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.72 E-value=0.0071 Score=60.48 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=25.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
..+.|+||+|+||||+++.|++.++...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 6889999999999999999999987654
No 181
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.72 E-value=0.0032 Score=60.75 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v 361 (684)
..|+|.|+||+||||+|+.|++.++.+.+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 6789999999999999999999886554433
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.71 E-value=0.0047 Score=59.72 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=24.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..+.|.||+|+||||+++.|++ ++.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3578999999999999999998 7877653
No 183
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.70 E-value=0.0047 Score=63.05 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..+.|+|++|+|||++++.||+.++.+|+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 688999999999999999999999887754
No 184
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.60 E-value=0.013 Score=62.39 Aligned_cols=79 Identities=18% Similarity=0.335 Sum_probs=44.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccc-ccc--CCccc-----------cchHHHHHHHHhcccch
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATT-LTQ--AGYVG-----------EDVESILYKLLTVSDYN 390 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l-----~~pfv~v~~s~-l~~--sgyvG-----------~~~~~~l~~l~~~a~~~ 390 (684)
+..++++||||+|||+||-.++..+ +...+.+|... +.+ +.-.| .+.+.....+..... .
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~-~ 106 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLD-A 106 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHH-T
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH-H
Confidence 3567899999999999987774333 45677777653 211 00011 111222011111100 0
Q ss_pred HHhhcCCEEEEccccccch
Q 005663 391 VAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 391 v~~a~~gVLfIDEIdkl~~ 409 (684)
+....+.+|+||-|..+.+
T Consensus 107 i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp CCTTCCEEEEEECSTTCBC
T ss_pred hhccCceEEEEeccccccc
Confidence 2234678999999999975
No 185
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.57 E-value=0.0039 Score=60.17 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
..|+|.|++|+|||++|+.|++.++.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999875443
No 186
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.53 E-value=0.009 Score=60.47 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..+.|.||||+|||++|+.|++.++.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 57899999999999999999999987654
No 187
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.49 E-value=0.029 Score=59.32 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~--~pfv~v~~s 364 (684)
..+++.||+|+||||++++|+..+. ...+.++..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 6889999999999999999998874 235555543
No 188
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.48 E-value=0.023 Score=72.84 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=49.6
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccC---Cccccch----------HHHHHHHHhcccchHH
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDV----------ESILYKLLTVSDYNVA 392 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~s---gyvG~~~----------~~~l~~l~~~a~~~v~ 392 (684)
+..+++|+||||||||+||.+++... +.+.+.+++.+..+. ...|.+. ......+.. ....
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~---~l~~ 1156 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---ALAR 1156 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH---HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHH---HHHH
Confidence 34789999999999999999996443 677777887765421 1111100 001111111 1112
Q ss_pred hhcCCEEEEccccccchhhc
Q 005663 393 AAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 393 ~a~~gVLfIDEIdkl~~~r~ 412 (684)
...+.+|+||++..+.+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~~e 1176 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPKAE 1176 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHH
T ss_pred hCCCCEEEECCccccccccc
Confidence 34578999999999976543
No 189
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.46 E-value=0.0078 Score=63.64 Aligned_cols=36 Identities=42% Similarity=0.642 Sum_probs=30.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..+++.||+|+|||+||..||+.++..++..|.-.+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 567899999999999999999999887776665443
No 190
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.45 E-value=0.015 Score=55.21 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~ 365 (684)
..++|.|+||+|||++++.|++.++ .++..++...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 6788999999999999999998873 3455555433
No 191
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.41 E-value=0.0082 Score=58.27 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..++|+||||+|||++++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 6789999999999999999999874
No 192
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.37 E-value=0.0081 Score=58.76 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..+.|+|++|||||++|+.+++.++.+++ |+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~ 46 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRI 46 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHH
Confidence 56779999999999999999999887765 44443
No 193
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.35 E-value=0.011 Score=59.85 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..+.|.||+|+||||+++.||+.++.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 57889999999999999999999987654
No 194
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.35 E-value=0.0089 Score=59.46 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=26.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..+.|.|++|+|||++++.|++.++.+++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 67899999999999999999999987664
No 195
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.34 E-value=0.0061 Score=65.56 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
.+++|+||||+|||+++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 578999999999999999999999887744
No 196
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.31 E-value=0.0087 Score=58.44 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=25.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..+.|.|++|+|||++++.|++ ++.+++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 5788999999999999999998 7776553
No 197
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.30 E-value=0.0086 Score=58.34 Aligned_cols=30 Identities=37% Similarity=0.535 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..+.|.|++|+|||++++.|++.++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 578999999999999999999999877653
No 198
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.29 E-value=0.015 Score=58.55 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=30.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC--------EEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP--------FVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p--------fv~v~~s~l~ 367 (684)
..|.|.|++|+|||++|+.|++.++.+ .+.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 578899999999999999999998876 3356666554
No 199
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.011 Score=56.41 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|+||+|+|||+|++.|++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999998764
No 200
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.24 E-value=0.025 Score=60.61 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=45.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccCC---ccccc----------hHHHHHHHHhcccchHHhh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGED----------VESILYKLLTVSDYNVAAA 394 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~sg---yvG~~----------~~~~l~~l~~~a~~~v~~a 394 (684)
..++|+|+||+|||++|..++..+ +.+.+.++...-.+.. -.|.+ ....+...+. ..+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~---~l~~~~ 140 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---ALARSG 140 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH---HHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHH---HHHhcc
Confidence 568899999999999999987654 5677777774321100 00110 0111111111 112234
Q ss_pred cCCEEEEccccccch
Q 005663 395 QQGIVYIDEVDKITK 409 (684)
Q Consensus 395 ~~gVLfIDEIdkl~~ 409 (684)
...+|+||.+..+..
T Consensus 141 ~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 141 AVDVIVVDSVAALTP 155 (356)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcCHHHhcc
Confidence 567999999999875
No 201
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.18 E-value=0.019 Score=72.72 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=48.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---CCccccch-------HHHHHHHHhcccchHHhhcC
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDV-------ESILYKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l~~---sgyvG~~~-------~~~l~~l~~~a~~~v~~a~~ 396 (684)
...++|+||||+|||+||..+|..+ +.+.+.++.....+ +...|.+. ...+.+++......+.....
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~ 811 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 811 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCC
Confidence 3688999999999999999997665 45677777654321 01111000 00112222222222334567
Q ss_pred CEEEEccccccch
Q 005663 397 GIVYIDEVDKITK 409 (684)
Q Consensus 397 gVLfIDEIdkl~~ 409 (684)
.+|+||++..+.+
T Consensus 812 ~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 812 DVIVVDSVAALTP 824 (1706)
T ss_dssp SEEEESCSTTCCC
T ss_pred CEEEEechhhhcc
Confidence 8999999999984
No 202
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.17 E-value=0.023 Score=60.60 Aligned_cols=35 Identities=37% Similarity=0.410 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---------CCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN---------VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~---------~pfv~v~~s~ 365 (684)
..+.|+||||+|||+|++.++..+. ...+.++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 5667999999999999999988762 3446676644
No 203
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.16 E-value=0.025 Score=59.31 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=27.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---------~~pfv~v~~s~ 365 (684)
..++|+||||+|||++|..++..+ +.+.+.++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 578899999999999999998764 44566676654
No 204
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.15 E-value=0.01 Score=56.80 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|+||+|+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999999877
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.14 E-value=0.0073 Score=58.49 Aligned_cols=34 Identities=35% Similarity=0.406 Sum_probs=26.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-~~pfv~v~~s~l 366 (684)
..+.+.|++|+|||++|+.|++.+ +.+ .++...+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~--~i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCS--VISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEE--EEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcE--EEeCCcc
Confidence 567899999999999999999877 443 3444433
No 206
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.13 E-value=0.0075 Score=59.99 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=31.4
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 326 ~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
+......++|.||||+|||++|..|++..+ +++..|...+
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 344457899999999999999999998876 6665555444
No 207
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.12 E-value=0.011 Score=62.75 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s 364 (684)
..+++.||+|+|||+||..||+.++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4678999999999999999999998766655544
No 208
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.10 E-value=0.0075 Score=61.81 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-~~pfv 359 (684)
..++|.|+||+|||++|+.|++.+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 568999999999999999999864 44443
No 209
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.08 E-value=0.013 Score=56.15 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|+||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 567899999999999999999886
No 210
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.04 E-value=0.012 Score=62.99 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
..|++.||+|+|||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999865554443
No 211
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.00 E-value=0.012 Score=57.47 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.||+|+|||++++.|++.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999998874
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.98 E-value=0.017 Score=56.24 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=29.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~----~pfv~v~~s~l 366 (684)
..++|.|++|+|||++++.|++.++ .+++.++...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 5788999999999999999998774 45777775443
No 213
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.98 E-value=0.088 Score=51.98 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~ 362 (684)
...+++++.+|.|||++|-.+|-.. |.+...+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3789999999999999999987555 56655553
No 214
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.86 E-value=0.014 Score=63.68 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
..+++.||+|+|||+||..||+.++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 567899999999999999999999876655444
No 215
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.86 E-value=0.012 Score=56.99 Aligned_cols=25 Identities=48% Similarity=0.505 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678999999999999999999886
No 216
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.84 E-value=0.03 Score=60.28 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~ 365 (684)
..++|+||||+|||++|..++..+ +.+.+.++...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 567899999999999999887554 56777777653
No 217
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.83 E-value=0.014 Score=55.56 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=25.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~ 365 (684)
..++|.||+|+||||+++.|++..+. .+.++...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 46789999999999999999986543 23444433
No 218
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.79 E-value=0.051 Score=62.16 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 688999999999999988775554
No 219
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.79 E-value=0.015 Score=56.55 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.||+|+|||||+++|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6778999999999999999999884
No 220
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.71 E-value=0.017 Score=55.31 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998773
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.62 E-value=0.018 Score=55.96 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|+||+|+|||||++.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6789999999999999999998764
No 222
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.57 E-value=0.026 Score=55.30 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..|.|.|++|||||++++.||+.++.+|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 46889999999999999999999999987
No 223
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.50 E-value=0.083 Score=57.51 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---------~~pfv~v~~s~ 365 (684)
..++|+||||+|||+|++.++-.. +...+.++...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 577899999999999999776333 23366666654
No 224
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.50 E-value=0.12 Score=50.86 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHH-HHHHHHHHHh--CCCEEEEec
Q 005663 331 SNILLMGPTGSGKT-LLAKTLARYV--NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT-~LAkaLA~~l--~~pfv~v~~ 363 (684)
.-.+++||.|+||| .|.+++.+.. +...+.+..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 45678999999999 8889986654 556666654
No 225
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.45 E-value=0.018 Score=59.22 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=26.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
..|.|.|++|+||||+|+.|+ .++.++ +++..+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~ 108 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHL 108 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHH
Confidence 578899999999999999999 467655 454443
No 226
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.40 E-value=0.042 Score=53.22 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
..+.|.|++|+|||++++.|+..+ +.+++..+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 577899999999999999999876 5555555443
No 227
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.37 E-value=0.012 Score=64.24 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=27.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l 366 (684)
+.-|+|+|+||+|||++|+.|++.++..+ ++...+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 36788999999999999999999887654 444443
No 228
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.34 E-value=0.046 Score=57.88 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---------~~pfv~v~~s~ 365 (684)
..++|+||||+|||++|..++... +.+.+.++...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 567899999999999999998763 44566666654
No 229
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.34 E-value=0.027 Score=55.00 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pf 358 (684)
+.|+|.||+|+|||+|++.|.+.....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4689999999999999999987764434
No 230
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.34 E-value=0.023 Score=56.16 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=22.2
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+.++.+++ ..+.|+||+|+|||+|++.|+..+
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33444444 467799999999999999999877
No 231
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.31 E-value=0.1 Score=50.95 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=23.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v 361 (684)
.-.+++||.|+|||+.+-.++..+ +...+.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 466899999999999888777665 5554444
No 232
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.29 E-value=0.052 Score=59.65 Aligned_cols=36 Identities=44% Similarity=0.601 Sum_probs=29.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~ 365 (684)
+..++++|++|+|||+++..||..+ +.....+++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4689999999999999999998776 45566666643
No 233
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.29 E-value=0.027 Score=56.37 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=24.1
Q ss_pred cccccccc-eEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 324 DTVELEKS-NILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 324 ~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
..+.+++. .+-|.||+|+||||+++.|+..++..
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34444443 56799999999999999999988643
No 234
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.17 E-value=0.028 Score=54.62 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|+||+|+|||||+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4677999999999999999999874
No 235
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.08 E-value=0.26 Score=55.20 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=28.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
+..|+|+|+||+|||+++..||..+ +.....+++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4789999999999999999998766 5666666663
No 236
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.01 E-value=0.032 Score=54.12 Aligned_cols=24 Identities=50% Similarity=0.540 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|+||+|+|||+|++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 577899999999999999999754
No 237
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.91 E-value=0.039 Score=52.01 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=25.7
Q ss_pred ccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 325 ~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.+.+.+.-.+|+||+|+|||+++++|+-.++
T Consensus 21 ~~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 21 VIPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445556778999999999999999998775
No 238
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.88 E-value=0.018 Score=55.49 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
-|.|.|++|+||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999998853
No 239
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.86 E-value=0.044 Score=63.08 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=31.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
..|+|.|.||+||||+|++|++.+ +.+++.+|...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 678999999999999999999999 889988875444
No 240
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.84 E-value=0.048 Score=53.77 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.||+|+|||+|+++|++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6788999999999999999998764
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.76 E-value=0.061 Score=55.99 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++|+||||+|||++|..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999865
No 242
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.75 E-value=0.04 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|.||.|+|||+|+++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999987
No 243
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.74 E-value=0.034 Score=52.62 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=17.6
Q ss_pred ceEEEEccCCCcHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaL 350 (684)
.-+.|+||+|+||||+++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 56779999999999999974
No 244
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=93.70 E-value=0.058 Score=51.54 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
.++++.+|+|+|||.++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999998777654
No 245
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.63 E-value=0.07 Score=52.22 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
..++|+||||+|||++|..++..+ +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 577899999999999998886543 455655554
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.60 E-value=0.13 Score=54.10 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=28.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
+..++++||+|+|||+++..||..+ +.....+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4678899999999999999998776 5566666654
No 247
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.40 E-value=0.046 Score=55.91 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++|+||+|+||||++++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 678899999999999999998876
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.31 E-value=0.049 Score=54.21 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.||+|+|||||.++|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5778999999999999999998774
No 249
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.24 E-value=0.051 Score=54.91 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=25.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
..+-|.||||+|||++|+.|++.++.+.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 345689999999999999999999887753
No 250
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.19 E-value=0.26 Score=55.05 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHH--HHHHh--CCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKT--LARYV--NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAka--LA~~l--~~pfv~v~~s~ 365 (684)
..++|+||+|+|||+|++. ++... +..-+.++..+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 6788999999999999999 44444 34456666543
No 251
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.12 E-value=0.034 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=15.3
Q ss_pred ceEEEEccCCCcHHHHHHHHH-HHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLA-RYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA-~~l 354 (684)
..+.|+||+|+|||++++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456799999999999999999 875
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.03 E-value=0.06 Score=53.73 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.-++|.||||+||||+++.|++.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999986
No 253
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.00 E-value=0.065 Score=53.66 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv 359 (684)
..|.+.|++|||||++|+.||+.++.+|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 46789999999999999999999999885
No 254
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.99 E-value=0.32 Score=48.64 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=24.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
.-.+++||.|+|||+.+-.++..+ +...+.+..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 455689999999999887776555 566655553
No 255
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.82 E-value=0.061 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|+||+|+|||+|+++|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 567899999999999999999988
No 256
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.73 E-value=0.065 Score=56.11 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=23.3
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++..+.|+||+|+||||+++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34688899999999999999999887
No 257
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.68 E-value=0.1 Score=54.72 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=27.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
+..++++||+|+||||++..||..+ +.....+++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4678899999999999999998876 4455555553
No 258
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.67 E-value=0.066 Score=56.22 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.||+|+|||||++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 5777999999999999999998873
No 259
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.67 E-value=0.063 Score=52.22 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|+||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 357899999999999999999876
No 260
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.62 E-value=0.051 Score=56.35 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~l~ 367 (684)
..|.|.||+|+||||+|+.|++.++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4678999999999999999999775 345566765553
No 261
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.61 E-value=0.077 Score=59.62 Aligned_cols=37 Identities=30% Similarity=0.554 Sum_probs=28.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~l 366 (684)
+..|+|+|.||+|||++|+.|++.+ +.+...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 4678999999999999999999988 444445555443
No 262
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.54 E-value=0.071 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+..+.|+||+|+||||+++.||..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999999877
No 263
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.48 E-value=0.19 Score=55.80 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 568999999999999999886554
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.42 E-value=0.075 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.+.||+|+||||+|+.|++.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5778999999999999999998885
No 265
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.39 E-value=0.13 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999875
No 266
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.31 E-value=0.21 Score=54.75 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=29.1
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
++..++++|++|+|||+++..||..+ +.....+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 55788899999999999999999877 4556666653
No 267
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.28 E-value=0.09 Score=59.83 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=30.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~----~pfv~v~~s~l 366 (684)
..|+|.|+||+|||++|++|++.++ .+++.+|...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 5789999999999999999999986 77887776543
No 268
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.24 E-value=0.08 Score=53.82 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++|+||||+|||+|++.++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 678899999999999999998654
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.23 E-value=0.08 Score=54.17 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.-++|.||||+|||+|++.++..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467799999999999999998766
No 270
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.22 E-value=0.18 Score=53.57 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
..+.|+|+||+|||+++..++..+ +.....+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 678999999999999999998776 555555554
No 271
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.14 E-value=0.081 Score=56.82 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++++||+|+||||++++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999998876
No 272
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.13 E-value=0.084 Score=55.89 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+..+.|+||+|+||||+++.||..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4788899999999999999999877
No 273
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.07 E-value=0.065 Score=54.13 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=26.0
Q ss_pred CCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++.++++++..+.|.||+|+|||||.++|+..+
T Consensus 16 ~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEEECSSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555555556799999999999999999876
No 274
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.86 E-value=0.094 Score=54.60 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=28.8
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEeccc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATT 365 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l----~~pfv~v~~s~ 365 (684)
++..++|+||+|+|||+++..||..+ |.....+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 35788999999999999999998766 44566666543
No 275
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.81 E-value=0.1 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678999999999999999999885
No 276
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.71 E-value=0.099 Score=56.12 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+..++|+||+|+||||+++.||..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4678899999999999999999877
No 277
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.69 E-value=0.057 Score=59.56 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=23.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
+..|+|+|.||+|||++++.|++.++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36889999999999999999998874
No 278
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.66 E-value=0.19 Score=49.04 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH----hCCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY----VNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~----l~~pfv~v~~ 363 (684)
.-+++.|+||+|||++|..++.. .+.+.+.++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 57789999999999999877532 2556655554
No 279
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.58 E-value=0.084 Score=52.96 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=26.1
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
++.++.+++. .+.|+||+|+|||||.++|+..+.
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3445555554 566999999999999999997663
No 280
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.52 E-value=0.084 Score=52.52 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=25.1
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+..+++++. .+.|+||+|+|||||.++|+..+
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555554 55699999999999999999766
No 281
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.47 E-value=0.072 Score=57.23 Aligned_cols=33 Identities=30% Similarity=0.608 Sum_probs=26.0
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++.++.+++. -+.|.||+|+|||||.++|+...
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3445556554 55699999999999999999876
No 282
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.42 E-value=1.1 Score=51.02 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=28.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-------CCCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV-------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l-------~~pfv~v~~s~ 365 (684)
.|+|+.|.||+|||.+++++...+ ...|+.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 799999999999999999975433 13488888774
No 283
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.34 E-value=0.51 Score=56.83 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=34.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
++|.++.++.|...+... . -....+.|+|+.|+|||+||+.++..
T Consensus 126 ~vgR~~~~~~l~~~l~~~-------~-----------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL-------N-----------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT-------T-----------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHHhhc-------c-----------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 699999999999887410 0 01257889999999999999988643
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.28 E-value=0.087 Score=52.02 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..+.|.||+|+|||||+++|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999876
No 285
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.26 E-value=0.12 Score=55.01 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
..+.|+||+|+|||||++.|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57889999999999999999998754
No 286
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.15 E-value=0.081 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|+|++|+|||+|++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999998873
No 287
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.14 E-value=0.084 Score=57.20 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=26.3
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
++.++.+++. .+.|.||+|+|||||.++|+....
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3445555554 556999999999999999998773
No 288
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.13 E-value=0.13 Score=50.11 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005663 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s 364 (684)
+|++|++|+|||++|+.++.. +.+.+.+.-.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999977 7777666654
No 289
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.12 E-value=0.14 Score=56.12 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..++++||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5789999999999999999998884
No 290
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.11 E-value=0.19 Score=56.19 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=33.8
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005663 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 279 ViGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
++|.+..++.|...+.. .. -....++++||+|+|||+||+.+++
T Consensus 126 ~vGR~~~l~~L~~~L~~--------------~~----------------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSK--------------LK----------------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHHTT--------------ST----------------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHHhc--------------cc----------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 69999999998887730 00 0126789999999999999998853
No 291
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.11 E-value=0.13 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..+.|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5688999999999999999999984
No 292
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.08 E-value=0.1 Score=52.44 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=26.3
Q ss_pred CCCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.++..+.+++. .+.|+||+|+|||||+++|+..+
T Consensus 21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445566554 56699999999999999998765
No 293
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.07 E-value=0.37 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
.-.++.|+||||||++.+.++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 5668999999999999877764
No 294
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.07 E-value=0.12 Score=50.29 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=26.9
Q ss_pred ccccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005663 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 327 ~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~ 363 (684)
......+||.|++|+|||++|.++.+. +..++.=|.
T Consensus 13 ~v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~ 48 (181)
T 3tqf_A 13 VIDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDV 48 (181)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSE
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCE
Confidence 344589999999999999999999874 444443333
No 295
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.04 E-value=0.12 Score=53.06 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
-++.|+||+|+|||||.++|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999876
No 296
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.98 E-value=0.091 Score=56.13 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=25.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~--pfv~v~ 362 (684)
..++|+||+|+||||++++|+..+.. ..+.++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 68899999999999999999987742 344444
No 297
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.97 E-value=0.099 Score=59.27 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=28.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEecccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~----~pfv~v~~s~l 366 (684)
..+.|+|++|+||||++++|++.++ ..+..++...+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5788999999999999999999984 23444565443
No 298
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.89 E-value=0.063 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.-|+|.|++|+||||+|+.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6788999999999999999999984
No 299
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.89 E-value=0.092 Score=56.45 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=26.5
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
++.++++++. .+.|.||+|+|||||.++||....
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3445566554 556999999999999999998763
No 300
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.85 E-value=0.088 Score=56.45 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=27.7
Q ss_pred CCCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 321 ~~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.++.++++++. .+.|.||+|+|||||.++|+....
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44556666664 556999999999999999998763
No 301
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.83 E-value=0.18 Score=57.76 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHH-HHHHHHh--CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLA-KTLARYV--NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LA-kaLA~~l--~~pfv~v~~ 363 (684)
.-.|+.||||||||+++ ..++..+ +.+.+.+..
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 35689999999999754 4444444 444444443
No 302
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.82 E-value=0.15 Score=45.96 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...++++|++|+|||+|..++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999999753
No 303
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.82 E-value=0.12 Score=58.02 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=24.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
..++|.|.+|+||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999974
No 304
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.78 E-value=0.096 Score=56.25 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=25.5
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+.++++++. .+.|.||+|+|||||.++|+...
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 445555554 56699999999999999999876
No 305
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.75 E-value=0.13 Score=51.95 Aligned_cols=31 Identities=39% Similarity=0.509 Sum_probs=24.5
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHH
Q 005663 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 323 ~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
+..+++++. .+.|.||+|+|||||.++|+..
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555554 5669999999999999999975
No 306
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.74 E-value=0.14 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++|+|++|+|||+|.++++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 578999999999999999998753
No 307
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.72 E-value=0.092 Score=53.12 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=25.9
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++..+.+++. .+.|+||+|+|||||.++|+..+
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445556554 56699999999999999998765
No 308
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.72 E-value=0.11 Score=52.93 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=26.2
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
++.++.+++. .+.|+||+|+|||||.++|+..+.
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445555554 556999999999999999997763
No 309
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.68 E-value=0.13 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++|+|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 578899999999999999998754
No 310
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.65 E-value=0.12 Score=52.59 Aligned_cols=33 Identities=30% Similarity=0.670 Sum_probs=25.7
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++.++++++. .+.|+||+|+|||||.++|+..+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344555554 56699999999999999998766
No 311
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.65 E-value=0.099 Score=56.39 Aligned_cols=33 Identities=24% Similarity=0.500 Sum_probs=25.9
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++.++++++. .+.|.||+|+|||||.++||...
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3445555554 55699999999999999999876
No 312
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.65 E-value=0.14 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998643
No 313
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.62 E-value=0.12 Score=52.06 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=26.5
Q ss_pred CCCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.++.++.+++. .+.|+||+|+|||||.++|+..+
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455666664 56699999999999999998765
No 314
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.61 E-value=0.16 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998653
No 315
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.54 E-value=0.55 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
...|+|+|++|+|||+|..+|..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 36899999999999999999964
No 316
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.51 E-value=0.12 Score=51.87 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=25.6
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
+..+.+++. .+.|.||+|+|||||.++|+..+.
T Consensus 24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344555554 566999999999999999997663
No 317
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.50 E-value=0.16 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999754
No 318
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.50 E-value=0.14 Score=52.33 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=25.0
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+..+++++. .+.|+||+|+|||||+++|+...
T Consensus 38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555554 56699999999999999999763
No 319
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.49 E-value=0.16 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|.|++|+|||+++..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999998876
No 320
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.47 E-value=0.12 Score=51.35 Aligned_cols=33 Identities=39% Similarity=0.647 Sum_probs=25.6
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++..+++++ ..+.|.||+|+|||||.++|+..+
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344455555 466799999999999999998765
No 321
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.42 E-value=0.1 Score=53.61 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++..+.+++. .+.|+||+|+|||||+++|+..+
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445555554 56699999999999999998766
No 322
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.42 E-value=0.31 Score=50.58 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=28.1
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
++..+.++|++|+|||+++..+|..+ +.....+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 55778899999999999999998776 455555555
No 323
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.41 E-value=0.13 Score=51.38 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=26.4
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
++..+.+++. .+.|.||+|+|||||.++|+..+.
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4445555554 566999999999999999998763
No 324
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.36 E-value=0.17 Score=48.57 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++|+|++|+|||+|..++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998654
No 325
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.35 E-value=0.13 Score=52.74 Aligned_cols=33 Identities=27% Similarity=0.665 Sum_probs=25.8
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++.++++++. .+.|+||+|+|||||+++|+..+
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445555554 55699999999999999999766
No 326
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.29 E-value=0.13 Score=53.09 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=27.3
Q ss_pred CCCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 321 ~~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.++.++.+++. .+.|+||+|+|||||+++|+..+.
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34555666664 567999999999999999998763
No 327
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.27 E-value=0.16 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|.|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 567899999999999999998765
No 328
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.24 E-value=0.17 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999754
No 329
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.20 E-value=0.13 Score=52.59 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=25.5
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
+..+++++. .+.|+||+|+|||||.++|+..+.
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 344555554 566999999999999999997763
No 330
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.18 E-value=0.16 Score=56.85 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+..++|+||+|+||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3577899999999999999999877
No 331
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.17 E-value=0.21 Score=59.97 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=23.3
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHH
Q 005663 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 323 ~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
+..+..++ ..++|+||.|+|||++.|.++..
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 33444443 56789999999999999998744
No 332
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.16 E-value=0.14 Score=52.29 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=26.7
Q ss_pred CCCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.++..+.+++. .+.|+||+|+|||||.++|+..+
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44555666664 56799999999999999998765
No 333
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.16 E-value=0.11 Score=58.25 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEecc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~--~pfv~v~~s 364 (684)
.++++.||+|+||||++++++..+. ...+.+...
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 5799999999999999999998883 345555543
No 334
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.12 E-value=0.18 Score=45.66 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 68899999999999999999753
No 335
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.11 E-value=0.14 Score=52.02 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=25.4
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
+..+++++. .+.|.||+|+|||||.++|+..+.
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344555554 567999999999999999997663
No 336
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.09 E-value=1.2 Score=51.37 Aligned_cols=19 Identities=58% Similarity=0.798 Sum_probs=16.9
Q ss_pred ceEEEEccCCCcHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAka 349 (684)
.++++.+|+|+|||+.+..
T Consensus 41 ~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp SCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHH
Confidence 6899999999999998843
No 337
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.03 E-value=0.17 Score=50.10 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.-|.|.|++|+|||++++.|++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999884
No 338
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.01 E-value=0.6 Score=56.11 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=21.8
Q ss_pred cccccc-ceEEEEccCCCcHHHHHHHHHH
Q 005663 325 TVELEK-SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 325 ~~~~~~-~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
.+..+. ..++|+||+|+|||++.|.++.
T Consensus 656 sl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 656 YFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5678999999999999999953
No 339
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.01 E-value=0.12 Score=56.16 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=26.5
Q ss_pred CCCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.++.++.+++. -+.|.||+|+|||||.++|+...
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34455666654 55699999999999999999765
No 340
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.95 E-value=0.3 Score=47.02 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
..++|+|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6889999999999999999987763
No 341
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.92 E-value=0.14 Score=52.76 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=26.0
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
++.++++++. .+.|+||+|+|||||.++|+..+.
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444555554 567999999999999999997763
No 342
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.92 E-value=0.15 Score=52.06 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=26.0
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++.++++++. .+.|.||+|+|||||.++|+..+
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445566554 56699999999999999998766
No 343
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=89.91 E-value=0.38 Score=56.90 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
...++|+||+|+|||++.|+++...
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 3567899999999999999998653
No 344
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.90 E-value=0.24 Score=46.01 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=23.8
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 326 VELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 326 ~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+...+.-.+|+||+|+|||++..||.-.+
T Consensus 19 i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44445677899999999999999997655
No 345
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.85 E-value=0.085 Score=56.44 Aligned_cols=32 Identities=25% Similarity=0.553 Sum_probs=25.5
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+.++++++. .+.|.||+|+|||||.++||...
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445555554 56699999999999999999876
No 346
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.84 E-value=0.16 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
...|+++|++|+|||+|..++..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999998864
No 347
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.83 E-value=0.15 Score=52.10 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=25.7
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++..+.+++. .+.|+||+|+|||||.++|+..+
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445556554 56699999999999999998765
No 348
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.76 E-value=0.29 Score=52.19 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=27.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
..|+++.||+|+|||++++.++..+ +..++.+|.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4799999999999999999997554 566666665
No 349
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.67 E-value=0.25 Score=46.44 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...++++|++|+|||+|..++...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999998653
No 350
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.66 E-value=0.21 Score=46.77 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++++|++|+|||+|..++....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999997643
No 351
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.64 E-value=0.16 Score=51.67 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.1
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
++.++.+++. .+.|.||+|+|||||.++|+..+.
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344555554 566999999999999999998763
No 352
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.60 E-value=0.21 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|.+++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999975
No 353
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.59 E-value=0.19 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
...++++|++|+|||+|.+++..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 354
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.56 E-value=0.2 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++|+|++|+|||+|.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999974
No 355
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.55 E-value=0.19 Score=46.89 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.8
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHH
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
+...|+++|++|+|||+|+.++...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999754
No 356
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.54 E-value=0.22 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++|+|++|+|||+|.+++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999975
No 357
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.39 E-value=0.26 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
...|+++|++|+|||+|..++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999864
No 358
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.39 E-value=0.16 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=20.9
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHH
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
....|+++|++|+|||+|..++...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999998543
No 359
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.36 E-value=0.22 Score=46.90 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.7
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHH
Q 005663 328 LEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 328 ~~~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
.+.-.++|+|++|+|||+|...+...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34478999999999999999887653
No 360
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.35 E-value=0.2 Score=45.67 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..++++|++|+|||+|.+++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCccHHHHHHHHh
Confidence 689999999999999999885
No 361
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.32 E-value=0.14 Score=52.48 Aligned_cols=32 Identities=28% Similarity=0.664 Sum_probs=25.2
Q ss_pred CcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+.+++++...+.|.||+|+|||||.++|+..+
T Consensus 23 ~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 23 NINLEVNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455553467799999999999999999776
No 362
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.31 E-value=0.22 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
-.++++|++|+|||+|.+++...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 689999999999999999997543
No 363
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.30 E-value=0.15 Score=54.97 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=27.4
Q ss_pred CCCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 321 ~~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
.++.++.+++. .+.|+||+|+|||||.++|+....
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 44556666665 456999999999999999998763
No 364
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=89.28 E-value=0.33 Score=54.35 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=33.9
Q ss_pred cChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005663 280 IGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 280 iGQd~aK~~L~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
+|.+..++.|...+... .. .....+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-------~~----------------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-------CD----------------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-------TT----------------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-------cC----------------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999998887410 00 0126788999999999999999996
No 365
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.23 E-value=0.22 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999975
No 366
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.21 E-value=0.17 Score=47.57 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=19.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++|+|++|+|||+|.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 367
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.20 E-value=0.2 Score=53.98 Aligned_cols=32 Identities=28% Similarity=0.569 Sum_probs=25.4
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+.++.+++ ..+.|.||+|+|||||.++||...
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34455555 456699999999999999999876
No 368
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.18 E-value=0.17 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=19.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.-|.|.|++|+||||+++.|++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999887
No 369
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.18 E-value=1.8 Score=53.81 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=31.0
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHhCCC--EEEEecc
Q 005663 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADAT 364 (684)
Q Consensus 322 ~~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l~~p--fv~v~~s 364 (684)
++.++++++ ..+.++||+|+|||+++++|.+.+... -+.+|..
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 444556666 466799999999999999999887432 3445543
No 370
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.16 E-value=0.17 Score=54.12 Aligned_cols=34 Identities=32% Similarity=0.655 Sum_probs=26.4
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
++.++++++. .+.|.||+|+|||||.++||....
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 3445555554 566999999999999999998763
No 371
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.09 E-value=0.23 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998653
No 372
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.07 E-value=0.32 Score=50.56 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=29.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s~ 365 (684)
+..+++.|++|+|||+++..+|..+ +.....+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5778899999999999999998777 56666666643
No 373
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.01 E-value=0.23 Score=44.94 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5789999999999999999874
No 374
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.99 E-value=0.24 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|.+++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68899999999999999998754
No 375
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.95 E-value=0.23 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
...|+++|++|+|||+|..++..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999864
No 376
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.94 E-value=0.24 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999643
No 377
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.83 E-value=1.2 Score=46.39 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.2
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
.++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 578999999999998765443
No 378
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.82 E-value=0.34 Score=48.18 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
.-|.|.|++|+|||++++.|++.+..+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 578899999999999999999999764
No 379
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.78 E-value=0.25 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...|+++|++|+|||+|..++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 378999999999999999999753
No 380
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.64 E-value=0.25 Score=44.91 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.1
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..++++|++|+|||+|..++.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.62 E-value=0.27 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHH
Q 005663 332 NILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
.++++|++|+|||+|..++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999653
No 382
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.61 E-value=0.25 Score=44.77 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.0
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
-.++++|++|+|||+|.+++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 578999999999999999884
No 383
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.60 E-value=0.26 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+++|++|+|||+|..++..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999975
No 384
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.58 E-value=0.25 Score=44.70 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999874
No 385
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.56 E-value=0.24 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.7
Q ss_pred cceEEEEccCCCcHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA 351 (684)
...++++|++|+|||+|.+++.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3679999999999999999885
No 386
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.56 E-value=0.22 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|+||+|+|||||+|+|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 578899999999999999998876
No 387
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.55 E-value=0.27 Score=49.55 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.-|.|.|++|+|||++++.|++.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999887
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.54 E-value=0.29 Score=44.45 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999964
No 389
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.44 E-value=0.26 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999974
No 390
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.35 E-value=0.14 Score=53.65 Aligned_cols=33 Identities=27% Similarity=0.600 Sum_probs=25.5
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005663 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~~~-~~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
+..+.+++ ..+.|+||+|+|||||+++|+..+.
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 33444544 4667999999999999999998763
No 391
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.19 E-value=0.31 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|.+++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999764
No 392
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=88.16 E-value=0.26 Score=49.03 Aligned_cols=31 Identities=39% Similarity=0.410 Sum_probs=26.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~ 362 (684)
..|-|+|..|||||++++.+++ +|.+++..|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 5678999999999999999998 888775444
No 393
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.15 E-value=0.29 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|.+++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999754
No 394
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.11 E-value=0.31 Score=45.12 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...|+++|++|+|||+|..++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368899999999999999999754
No 395
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.09 E-value=0.26 Score=45.06 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..|+++|++|+|||+|..++.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 688999999999999999884
No 396
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.09 E-value=0.28 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++|+|+||+|||+|.+++...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999753
No 397
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.03 E-value=0.41 Score=58.05 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.1
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..++|+||.|+|||++.|+++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568899999999999999994
No 398
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.99 E-value=0.3 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 68899999999999999999753
No 399
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.98 E-value=0.23 Score=51.58 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=26.1
Q ss_pred CCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++..+.++++ .+.|+||+|+|||||.++|+..+
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4445566554 56699999999999999998776
No 400
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.97 E-value=0.42 Score=54.03 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=28.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccc
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~---~pfv~v~~s~ 365 (684)
..++|.|++|+|||++|+.|++.++ .++..++...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 5788999999999999999998773 4566666543
No 401
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.97 E-value=0.26 Score=48.68 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
.-+.|.|+.|+||||+++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999999887
No 402
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.95 E-value=0.33 Score=47.29 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=25.4
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 326 ~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
+...+.-.+|+||+|+|||++..+|.-.++.
T Consensus 19 i~f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEeCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4445567899999999999999999877644
No 403
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.92 E-value=1 Score=52.84 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=17.8
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..+++.||+|+|||+++..+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999999766663
No 404
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.92 E-value=0.46 Score=49.53 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
.-+++.|+||+|||++|..+|... +.+.+.++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 567899999999999999997554 334544443
No 405
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.81 E-value=0.28 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred cceEEEEccCCCcHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA 351 (684)
...|+|+|++|+|||+|..++.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999998874
No 406
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.80 E-value=0.31 Score=44.64 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 6899999999999999999863
No 407
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=87.78 E-value=0.28 Score=56.10 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999877665443
No 408
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.77 E-value=0.49 Score=51.92 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=30.7
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l----~~pfv~v~~s~l 366 (684)
++..++++|++|+|||+++-.||..+ +.....+++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35788999999999999999998666 667777777643
No 409
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.75 E-value=0.31 Score=45.53 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68899999999999999999764
No 410
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.74 E-value=0.34 Score=44.96 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999764
No 411
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.71 E-value=0.3 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.-|.|.|++|+|||++++.|++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999888
No 412
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.69 E-value=0.34 Score=48.46 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
.-|.|.|++|+|||++++.|++.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57789999999999999999988743
No 413
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.65 E-value=0.32 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999998864
No 414
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.62 E-value=0.32 Score=45.56 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+|+|++|+|||+|..++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68899999999999999998753
No 415
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.59 E-value=0.32 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|.+++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999653
No 416
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.59 E-value=0.85 Score=48.10 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=24.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecc
Q 005663 332 NILLMGPTGSGKTLLAKTLARYV----NVPFVIADAT 364 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l----~~pfv~v~~s 364 (684)
++++..|+|+|||..+-.++... +.+.+.+-.+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 78999999999999987775544 4555555544
No 417
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=87.58 E-value=0.32 Score=45.77 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...|+++|++|+|||+|...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 368999999999999999988653
No 418
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.58 E-value=0.33 Score=44.59 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998653
No 419
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.56 E-value=0.78 Score=45.96 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHH-HHHHHHHHh--CCCEEEEe
Q 005663 331 SNILLMGPTGSGKTL-LAKTLARYV--NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~-LAkaLA~~l--~~pfv~v~ 362 (684)
.-.+++||-|+|||+ |.+.+-+.. +...+.+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 455789999999999 555553332 45554443
No 420
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.53 E-value=0.59 Score=46.28 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV--NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l--~~pfv~v~~ 363 (684)
..+++.|.+|+|||+++..+|..+ +.....+|+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 677899999999999999998776 555666664
No 421
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.53 E-value=0.34 Score=45.60 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...|+++|++|+|||+|..++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998643
No 422
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.48 E-value=0.18 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..+.|+|++|+|||+|.++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999988863
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.41 E-value=0.34 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999998653
No 424
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.37 E-value=0.36 Score=46.59 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++++|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 678899999999999999998775
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.36 E-value=0.27 Score=54.82 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=26.6
Q ss_pred CCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
++..+.+++..+.|+||+|+|||||.++|+..+
T Consensus 21 ~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 21 FARTFDFDELVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEEECCSSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceEEEEccceEEEECCCCCcHHHHHHHHhcCC
Confidence 344555555566799999999999999999887
No 426
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.33 E-value=0.35 Score=44.95 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..|+++|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999998887544
No 427
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.29 E-value=0.32 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998864
No 428
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.29 E-value=0.35 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 6889999999999999999864
No 429
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=87.26 E-value=0.28 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...++++|++|+|||+|...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999999753
No 430
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.14 E-value=0.29 Score=52.27 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=24.4
Q ss_pred ccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 325 TVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 325 ~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.+..++.-++|+||+|+|||++..+|+-.+
T Consensus 18 ~i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 18 DIEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 345555677899999999999999997555
No 431
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.13 E-value=0.52 Score=50.14 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
..+.|.||+|+|||+|.+.|+......
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 577899999999999999999998644
No 432
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.07 E-value=0.37 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|+||||+|||+|.++|+..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 567799999999999999998776
No 433
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.04 E-value=0.34 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999998864
No 434
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.01 E-value=0.34 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..+.|+|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999643
No 435
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.01 E-value=0.27 Score=45.40 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.2
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..++++|++|+|||+|..++.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 789999999999999998775
No 436
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=87.01 E-value=0.34 Score=45.09 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...|+++|++|+|||+|..++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999654
No 437
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.98 E-value=0.39 Score=45.27 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999754
No 438
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.89 E-value=0.41 Score=43.97 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988753
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.89 E-value=0.53 Score=51.73 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l~~p 357 (684)
..+.|.||+|+|||+|++.|+......
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 567899999999999999999998543
No 440
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.85 E-value=0.38 Score=44.89 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999999753
No 441
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.72 E-value=0.39 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998753
No 442
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=86.65 E-value=0.6 Score=51.10 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=25.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l----~~pfv~v~~ 363 (684)
.-+++.|+||+|||++|..++..+ +.+.+.++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 567899999999999999997654 446665554
No 443
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.62 E-value=0.39 Score=44.30 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+|+|++|+|||+|..++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6899999999999999999874
No 444
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=86.61 E-value=0.38 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|..++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 7899999999999999998864
No 445
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.59 E-value=0.38 Score=53.76 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..++|.||+|+|||+|++.++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 677899999999999999998665
No 446
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=86.58 E-value=0.64 Score=46.01 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=28.8
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCC-CEEEEeccc
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATT 365 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l~~-pfv~v~~s~ 365 (684)
|+.-++|+|.||+||+++|+.+.+.++. .+..+.+++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 5578899999999999999999887753 244455544
No 447
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.55 E-value=0.55 Score=50.69 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=27.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~s 364 (684)
..|++++|+||+|||++++.+...+ +.+++.+|..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4899999999999999987775433 6677777763
No 448
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=86.43 E-value=0.41 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...|+++|++|+|||+|..++...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999753
No 449
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.40 E-value=0.41 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 450
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.32 E-value=0.43 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...|+++|++|+|||+|..++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 378999999999999999998643
No 451
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.28 E-value=0.41 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
-.|+|+|++|+|||+|..++...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 689999999999999999997654
No 452
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.27 E-value=0.44 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+++|++|+|||+|..++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 6899999999999999999975
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=86.24 E-value=0.41 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999999653
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=86.24 E-value=0.59 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...|+++|++|+|||+|..++...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999998753
No 455
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.20 E-value=0.4 Score=44.85 Aligned_cols=22 Identities=50% Similarity=0.653 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..++++|++|+|||+|.+++..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998864
No 456
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.17 E-value=0.42 Score=44.59 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+++|++|+|||+|..++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 7899999999999999998873
No 457
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=86.14 E-value=0.43 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999999754
No 458
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.11 E-value=0.37 Score=50.87 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=25.8
Q ss_pred ccccceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005663 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 327 ~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~ 360 (684)
......+||.|++|+|||++|.++.+. +..++.
T Consensus 141 ~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 141 DVYGVGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 334578999999999999999999775 444543
No 459
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.02 E-value=0.44 Score=45.12 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..|+++|++|+|||+|..++.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999884
No 460
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=86.01 E-value=0.43 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
...|+|+|++|+|||+|..++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 378999999999999999999754
No 461
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=85.95 E-value=0.43 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+|+|++|+|||+|..++..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999865
No 462
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.86 E-value=0.43 Score=45.08 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+++|++|+|||+|..++..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998864
No 463
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.86 E-value=0.7 Score=50.45 Aligned_cols=33 Identities=27% Similarity=0.219 Sum_probs=25.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l----~~pfv~v~~ 363 (684)
.-+++.|+||+|||++|..+|... +.+.+.++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 567899999999999999987544 446665555
No 464
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=85.84 E-value=0.98 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|+|+||+|||+|..++...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998765
No 465
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=85.77 E-value=0.46 Score=45.33 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999754
No 466
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=85.66 E-value=0.49 Score=50.70 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=26.3
Q ss_pred CcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
...+.+++...+|+||+|+|||++.++|+-.+
T Consensus 19 ~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 19 PGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp SEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 44566666777899999999999999998655
No 467
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.64 E-value=1 Score=47.40 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.+.|+||+|||+++..|+..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 678899999999999999998765
No 468
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=85.64 E-value=0.19 Score=53.78 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.6
Q ss_pred CcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005663 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 323 ~~~~~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~ 356 (684)
+..+.+.+..+.|+||+|+|||+|.++|+-.++.
T Consensus 53 ~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 53 QLELELGGGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EEEEECCSSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred eEEEecCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445566677789999999999999999887754
No 469
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.51 E-value=0.5 Score=44.78 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+++|++|+|||+|..++..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999874
No 470
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=85.44 E-value=0.51 Score=49.75 Aligned_cols=40 Identities=35% Similarity=0.366 Sum_probs=29.4
Q ss_pred ccccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005663 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 327 ~~~~~~vLL~GPpGTGKT~LAkaLA~~l~~pfv~v~~s~l~ 367 (684)
......+||.|++|+|||++|-.+.+ -|..++.=|...+.
T Consensus 144 ~~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i~ 183 (312)
T 1knx_A 144 EVFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEIY 183 (312)
T ss_dssp EETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEEE
T ss_pred EECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEEE
Confidence 34458999999999999999988765 35556665555543
No 471
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=85.36 E-value=0.48 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|.+.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999764
No 472
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.34 E-value=0.37 Score=54.53 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=27.1
Q ss_pred CCCcccccccc-eEEEEccCCCcHHHHHHHHHHHh
Q 005663 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~~~~-~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
.++.+++++++ .+.|+||+|+|||||++.++..+
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44556666664 66799999999999999999866
No 473
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.13 E-value=0.5 Score=45.46 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+|+|++|+|||+|.+++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68899999999999999998754
No 474
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=84.97 E-value=0.42 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
-.++|+||+|+|||+|.++|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4679999999999999999864
No 475
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.94 E-value=0.52 Score=44.14 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|.+++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999754
No 476
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=84.88 E-value=0.48 Score=56.03 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+++.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999877765443
No 477
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=84.83 E-value=0.52 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|.||+|+|||+|.++|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 567899999999999999999 54
No 478
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=84.68 E-value=0.51 Score=49.56 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=22.6
Q ss_pred ccccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 327 ELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 327 ~~~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
...+.-.+|+||+|+|||++..||.-.+
T Consensus 20 ~f~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 20 EFKEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445677899999999999999986544
No 479
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=84.58 E-value=0.51 Score=44.49 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..|+++|++|+|||+|..++.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 679999999999999999984
No 480
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=84.53 E-value=0.56 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+++|++|+|||+|..++..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999998863
No 481
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.52 E-value=0.87 Score=44.23 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=24.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005663 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~ 362 (684)
|.|-|+-|+||||.++.|++.+ +.+.+...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999888 55555443
No 482
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=84.48 E-value=0.33 Score=44.85 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=10.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+++|++|+|||+|..++..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999988853
No 483
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.38 E-value=0.56 Score=44.75 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
...|+++|++|+|||+|..++..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 36899999999999999999875
No 484
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.24 E-value=0.44 Score=52.31 Aligned_cols=21 Identities=48% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 005663 333 ILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 333 vLL~GPpGTGKT~LAkaLA~~ 353 (684)
+.|+||+|+|||||.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999865
No 485
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=84.21 E-value=0.52 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.5
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..|+++|++|+|||+|.+++.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 689999999999999999885
No 486
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.20 E-value=0.86 Score=48.42 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=25.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l---~~pfv~v~~ 363 (684)
.-++|.|+||+|||++|..+|..+ +.+.+.++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 567899999999999999997664 555555544
No 487
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=84.18 E-value=0.45 Score=45.28 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..|+|+|++|+|||+|.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 688999999999999999884
No 488
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.10 E-value=0.56 Score=44.37 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=20.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005663 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
...++|+|++|+|||+|.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 37899999999999999987754
No 489
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.09 E-value=0.56 Score=50.31 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.2
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh
Q 005663 329 EKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 329 ~~~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
+...+.|+||+|+|||+|.++|+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 44678899999999999999998654
No 490
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=84.08 E-value=0.58 Score=44.41 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+|+|+||+|||+|...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999875
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.00 E-value=0.61 Score=45.73 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005663 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAkaLA~~l~ 355 (684)
=|.|-|+.|+||||+++.|++.+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 367889999999999999999883
No 492
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=83.93 E-value=0.59 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+|+|++|+|||+|..++..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 6899999999999999998864
No 493
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=83.93 E-value=0.58 Score=45.07 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+++|++|+|||+|..++..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6899999999999999998863
No 494
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=83.88 E-value=0.61 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+|+|++|+|||+|...+..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 6799999999999999999864
No 495
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=83.86 E-value=0.61 Score=44.40 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..++++|++|+|||+|...+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988753
No 496
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=83.85 E-value=0.47 Score=44.27 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.1
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA 351 (684)
..++++|++|+|||+|..++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998873
No 497
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=83.58 E-value=0.66 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~ 353 (684)
..|+++|++|+|||+|...+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 78999999999999999888753
No 498
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.56 E-value=0.58 Score=52.70 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|+||+|+|||||+++|+..+
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999998765
No 499
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.51 E-value=0.48 Score=49.03 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005663 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~~l 354 (684)
..+.|.||+|+|||+|.++|+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 567899999999999999998654
No 500
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=83.50 E-value=0.67 Score=45.09 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005663 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAkaLA~ 352 (684)
..|+|+|++|+|||+|..++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999988853
Done!