Query 005664
Match_columns 684
No_of_seqs 269 out of 1384
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 64.3 3.2 0.00011 33.6 2.1 28 131-158 17-44 (56)
2 3j21_g 50S ribosomal protein L 56.5 4.7 0.00016 32.0 1.7 29 131-159 12-40 (51)
3 1x4u_A Zinc finger, FYVE domai 46.5 8.6 0.00029 32.5 2.0 27 131-157 12-40 (84)
4 1joc_A EEA1, early endosomal a 43.5 9 0.00031 35.0 1.7 27 131-157 67-95 (125)
5 1wfk_A Zinc finger, FYVE domai 40.7 11 0.00037 32.5 1.7 28 130-157 6-35 (88)
6 1z2q_A LM5-1; membrane protein 38.4 14 0.00047 31.3 2.0 27 131-157 19-47 (84)
7 1dvp_A HRS, hepatocyte growth 35.9 11 0.00039 36.9 1.2 25 134-158 162-188 (220)
8 2yw8_A RUN and FYVE domain-con 34.1 16 0.00054 30.8 1.7 28 131-158 17-46 (82)
9 1vfy_A Phosphatidylinositol-3- 33.7 13 0.00043 30.7 1.0 23 135-157 13-37 (73)
10 3u5e_m 60S ribosomal protein L 31.0 19 0.00064 32.4 1.7 26 131-156 91-118 (128)
11 3t7l_A Zinc finger FYVE domain 28.9 22 0.00075 30.5 1.7 27 131-157 18-46 (90)
12 1wv8_A TT1413, hypothetical pr 26.2 25 0.00087 29.7 1.6 15 547-561 7-21 (73)
13 3zyq_A Hepatocyte growth facto 24.0 24 0.00082 35.0 1.2 24 135-158 166-191 (226)
14 2dkt_A Ring finger and CHY zin 23.6 21 0.00072 33.8 0.7 42 131-172 81-126 (143)
15 2vrw_B P95VAV, VAV1, proto-onc 23.2 26 0.00089 36.9 1.3 29 131-159 355-386 (406)
16 1y02_A CARP2, FYVE-ring finger 21.7 25 0.00085 32.2 0.7 26 132-157 18-45 (120)
17 2dkt_A Ring finger and CHY zin 21.5 21 0.00073 33.7 0.2 31 135-165 103-136 (143)
18 2knc_B Integrin beta-3; transm 20.7 1.1E+02 0.0039 25.8 4.6 30 243-272 23-52 (79)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=64.26 E-value=3.2 Score=33.57 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.3
Q ss_pred cccccccccccccCCCCCCCccCCcccc
Q 005664 131 DDALFCTLCNAEVRRFSKHCRSCDKCVD 158 (684)
Q Consensus 131 d~~~fC~tC~i~KPpRShHCsvCnrCVl 158 (684)
....+|..|.+.-|+++..|+.|+..-+
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred hchhhhccccCcCCcccccccCCCCCCC
Confidence 4678899999999999999999986544
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.54 E-value=4.7 Score=32.01 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=24.6
Q ss_pred cccccccccccccCCCCCCCccCCccccC
Q 005664 131 DDALFCTLCNAEVRRFSKHCRSCDKCVDG 159 (684)
Q Consensus 131 d~~~fC~tC~i~KPpRShHCsvCnrCVlr 159 (684)
-..+.|..|....+.++..|+.|+.--++
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 46778999999999999999999876443
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.49 E-value=8.6 Score=32.55 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=18.9
Q ss_pred cccccccccccc--cCCCCCCCccCCccc
Q 005664 131 DDALFCTLCNAE--VRRFSKHCRSCDKCV 157 (684)
Q Consensus 131 d~~~fC~tC~i~--KPpRShHCsvCnrCV 157 (684)
++...|..|... .-.|-|||+.|++-+
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEE
Confidence 445568888653 346789999998843
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.48 E-value=9 Score=34.98 Aligned_cols=27 Identities=26% Similarity=0.653 Sum_probs=19.8
Q ss_pred cccccccccccc--cCCCCCCCccCCccc
Q 005664 131 DDALFCTLCNAE--VRRFSKHCRSCDKCV 157 (684)
Q Consensus 131 d~~~fC~tC~i~--KPpRShHCsvCnrCV 157 (684)
.....|..|... ...|-|||+.||+-|
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEE
Confidence 445679999764 346889999999844
No 5
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=40.70 E-value=11 Score=32.46 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=20.4
Q ss_pred Ccccccccccccc--cCCCCCCCccCCccc
Q 005664 130 GDDALFCTLCNAE--VRRFSKHCRSCDKCV 157 (684)
Q Consensus 130 ~d~~~fC~tC~i~--KPpRShHCsvCnrCV 157 (684)
.++...|..|... .-.|-|||+.|++-+
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEE
Confidence 3556679999753 346789999999843
No 6
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=38.36 E-value=14 Score=31.32 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=18.0
Q ss_pred cccccccccccc--cCCCCCCCccCCccc
Q 005664 131 DDALFCTLCNAE--VRRFSKHCRSCDKCV 157 (684)
Q Consensus 131 d~~~fC~tC~i~--KPpRShHCsvCnrCV 157 (684)
++...|..|... .-.|-|||+.|++-+
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEE
Confidence 344567777643 235789999998844
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.90 E-value=11 Score=36.92 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=17.8
Q ss_pred ccccccccc--cCCCCCCCccCCcccc
Q 005664 134 LFCTLCNAE--VRRFSKHCRSCDKCVD 158 (684)
Q Consensus 134 ~fC~tC~i~--KPpRShHCsvCnrCVl 158 (684)
..|..|... .-.|-|||+.||+.+-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccCCCCCccCCcccccccCCcCCEEC
Confidence 468888643 2358899999998543
No 8
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=34.13 E-value=16 Score=30.79 Aligned_cols=28 Identities=36% Similarity=0.796 Sum_probs=19.6
Q ss_pred ccccccccccccc--CCCCCCCccCCcccc
Q 005664 131 DDALFCTLCNAEV--RRFSKHCRSCDKCVD 158 (684)
Q Consensus 131 d~~~fC~tC~i~K--PpRShHCsvCnrCVl 158 (684)
++...|..|...= -.|-|||+.||+-+-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 46 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFC 46 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEC
Confidence 4556788887532 357899999998543
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=33.69 E-value=13 Score=30.73 Aligned_cols=23 Identities=30% Similarity=0.826 Sum_probs=16.5
Q ss_pred cccccccc--cCCCCCCCccCCccc
Q 005664 135 FCTLCNAE--VRRFSKHCRSCDKCV 157 (684)
Q Consensus 135 fC~tC~i~--KPpRShHCsvCnrCV 157 (684)
.|..|... .-.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888753 235789999998843
No 10
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=31.04 E-value=19 Score=32.39 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=22.8
Q ss_pred cccccccccccccCCCCCCCc--cCCcc
Q 005664 131 DDALFCTLCNAEVRRFSKHCR--SCDKC 156 (684)
Q Consensus 131 d~~~fC~tC~i~KPpRShHCs--vCnrC 156 (684)
-...+|..|.+.-|+++..|+ .|+..
T Consensus 91 ~~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 91 CDKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp TSCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred cceEeeccccccCCchhhccchhhCCCc
Confidence 467899999999999999999 48764
No 11
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.90 E-value=22 Score=30.54 Aligned_cols=27 Identities=30% Similarity=0.736 Sum_probs=18.6
Q ss_pred cccccccccccc--cCCCCCCCccCCccc
Q 005664 131 DDALFCTLCNAE--VRRFSKHCRSCDKCV 157 (684)
Q Consensus 131 d~~~fC~tC~i~--KPpRShHCsvCnrCV 157 (684)
.+...|..|... .-.|-|||+.||+-+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEE
Confidence 345568888743 245789999998744
No 12
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=26.16 E-value=25 Score=29.74 Aligned_cols=15 Identities=40% Similarity=0.838 Sum_probs=12.6
Q ss_pred ceeeccCCCceeeec
Q 005664 547 SVVWDQEAGRYVSVP 561 (684)
Q Consensus 547 sv~wd~eagr~vs~~ 561 (684)
-+.||+|||-||...
T Consensus 7 ~~~~Deeagv~vA~s 21 (73)
T 1wv8_A 7 QALWDGEAGVWVAES 21 (73)
T ss_dssp EEEEETTTTEEEEEC
T ss_pred EEEEeCCCCEEEEEC
Confidence 468999999999764
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.96 E-value=24 Score=34.98 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=15.8
Q ss_pred cccccccc--cCCCCCCCccCCcccc
Q 005664 135 FCTLCNAE--VRRFSKHCRSCDKCVD 158 (684)
Q Consensus 135 fC~tC~i~--KPpRShHCsvCnrCVl 158 (684)
.|..|... .-.|-|||+.||+.+-
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C 191 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFC 191 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CCcCcCCCCCccccccccCCCcCEeC
Confidence 57777632 2346799999988543
No 14
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=23.55 E-value=21 Score=33.76 Aligned_cols=42 Identities=31% Similarity=0.695 Sum_probs=25.4
Q ss_pred cccccccccccccC-CCCCCCccCCccccCC--c-ccccccccccc
Q 005664 131 DDALFCTLCNAEVR-RFSKHCRSCDKCVDGF--D-HHCRWLNNCVG 172 (684)
Q Consensus 131 d~~~fC~tC~i~KP-pRShHCsvCnrCVlrf--D-HHCpWLnNCIG 172 (684)
....||.+|+.+-+ +...||..||.|-.+- | -||.--|.|+.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 34456777777643 3456777777776652 1 26666666654
No 15
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.20 E-value=26 Score=36.87 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=21.9
Q ss_pred ccccccccccccc---CCCCCCCccCCccccC
Q 005664 131 DDALFCTLCNAEV---RRFSKHCRSCDKCVDG 159 (684)
Q Consensus 131 d~~~fC~tC~i~K---PpRShHCsvCnrCVlr 159 (684)
....+|..|...- -.|-+||+.|+..|.+
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 4567899998644 4688999999876654
No 16
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.70 E-value=25 Score=32.17 Aligned_cols=26 Identities=23% Similarity=0.430 Sum_probs=17.9
Q ss_pred ccccccccccc--cCCCCCCCccCCccc
Q 005664 132 DALFCTLCNAE--VRRFSKHCRSCDKCV 157 (684)
Q Consensus 132 ~~~fC~tC~i~--KPpRShHCsvCnrCV 157 (684)
....|..|... ...|-|||+.||+.+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred ccCcccCcCCccccccccccCCCCCCee
Confidence 34578888753 346889999999853
No 17
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=21.46 E-value=21 Score=33.75 Aligned_cols=31 Identities=26% Similarity=0.679 Sum_probs=23.1
Q ss_pred cccccccccCCCCCCCccCCccccC--Cc-cccc
Q 005664 135 FCTLCNAEVRRFSKHCRSCDKCVDG--FD-HHCR 165 (684)
Q Consensus 135 fC~tC~i~KPpRShHCsvCnrCVlr--fD-HHCp 165 (684)
.|..|.+-...--.||..||.|+.. +| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 3666666667789999999999654 55 7774
No 18
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.74 E-value=1.1e+02 Score=25.85 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHhh
Q 005664 243 CIPLGELFFFHMILIRKGITTYEYVVAMRA 272 (684)
Q Consensus 243 ~I~Lg~Ll~fHL~LI~rN~TTyE~l~~~R~ 272 (684)
++.+..|++|-++....+.--|+.+.+.|.
T Consensus 23 liGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 23 LIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666665555555444
Done!