Query 005664
Match_columns 684
No_of_seqs 269 out of 1384
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 03:58:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005664.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005664hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 75.2 0.67 4.9E-05 35.5 2.2 25 131-155 17-41 (56)
2 d1joca1 g.50.1.1 (A:1348-1411) 48.7 3.3 0.00024 31.7 1.7 28 131-158 6-35 (64)
3 d2dmda2 g.37.1.1 (A:8-33) Zinc 44.6 2.7 0.0002 27.1 0.5 15 148-162 2-16 (26)
4 d2dkta2 g.93.1.1 (A:82-137) RI 44.3 2 0.00015 32.8 -0.2 24 136-159 23-46 (56)
5 d1vfya_ g.50.1.1 (A:) vps27p p 41.2 3.9 0.00028 31.6 1.0 24 135-158 7-32 (67)
6 d2dkta2 g.93.1.1 (A:82-137) RI 40.1 4.1 0.0003 31.1 0.9 41 133-173 2-46 (56)
7 d1wfka_ g.50.1.1 (A:) Zinc fin 34.8 7 0.00051 31.7 1.6 28 131-158 7-36 (88)
8 d1wv8a1 d.304.1.1 (A:2-72) Hyp 33.2 7.2 0.00053 30.9 1.4 16 546-561 5-20 (71)
9 d1dvpa2 g.50.1.1 (A:149-220) H 32.9 7.7 0.00056 30.2 1.6 24 135-158 15-40 (72)
10 d2pg3a1 c.26.2.1 (A:1-230) Que 30.0 4.8 0.00035 36.3 -0.2 25 133-159 182-206 (230)
11 d2adra2 g.37.1.1 (A:131-161) A 20.6 9.8 0.00072 25.6 -0.0 14 148-161 2-15 (31)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=75.19 E-value=0.67 Score=35.53 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.6
Q ss_pred cccccccccccccCCCCCCCccCCc
Q 005664 131 DDALFCTLCNAEVRRFSKHCRSCDK 155 (684)
Q Consensus 131 d~~~fC~tC~i~KPpRShHCsvCnr 155 (684)
.....|..|.+.-|+|+..|+.|+.
T Consensus 17 ~~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 17 FLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhhHHHhhccccCCccccccccCCC
Confidence 5678999999999999999998875
No 2
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.74 E-value=3.3 Score=31.67 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=19.5
Q ss_pred ccccccccccc--ccCCCCCCCccCCcccc
Q 005664 131 DDALFCTLCNA--EVRRFSKHCRSCDKCVD 158 (684)
Q Consensus 131 d~~~fC~tC~i--~KPpRShHCsvCnrCVl 158 (684)
++..-|..|.. ..-.|-|||+.||+.|=
T Consensus 6 ~~~~~C~~C~~~F~~~~rrHHCR~CG~v~C 35 (64)
T d1joca1 6 NEVQNCMACGKGFSVTVRRHHCRQCGNIFC 35 (64)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred ccCCcCcCcCCcccCCccccchhhhCCeec
Confidence 34556888865 23457899999998654
No 3
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.63 E-value=2.7 Score=27.07 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=12.4
Q ss_pred CCCccCCccccCCcc
Q 005664 148 KHCRSCDKCVDGFDH 162 (684)
Q Consensus 148 hHCsvCnrCVlrfDH 162 (684)
|-|.+|++|..+-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 569999999988764
No 4
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.27 E-value=2 Score=32.84 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=15.3
Q ss_pred ccccccccCCCCCCCccCCccccC
Q 005664 136 CTLCNAEVRRFSKHCRSCDKCVDG 159 (684)
Q Consensus 136 C~tC~i~KPpRShHCsvCnrCVlr 159 (684)
|..|++-....-.||..|+.|+..
T Consensus 23 CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 23 CGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp TTEEEESCGGGEEEETTTTEEEEG
T ss_pred CCceeecCCccccccCccccccCc
Confidence 444555555667777777777754
No 5
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.16 E-value=3.9 Score=31.55 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=17.3
Q ss_pred ccccccc--ccCCCCCCCccCCcccc
Q 005664 135 FCTLCNA--EVRRFSKHCRSCDKCVD 158 (684)
Q Consensus 135 fC~tC~i--~KPpRShHCsvCnrCVl 158 (684)
-|..|+. -.-.|-|||+.||+-+=
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 3888875 33467899999998544
No 6
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.07 E-value=4.1 Score=31.08 Aligned_cols=41 Identities=29% Similarity=0.670 Sum_probs=31.2
Q ss_pred cccccccccccC-CCCCCCccCCccccCC---ccccccccccccc
Q 005664 133 ALFCTLCNAEVR-RFSKHCRSCDKCVDGF---DHHCRWLNNCVGH 173 (684)
Q Consensus 133 ~~fC~tC~i~KP-pRShHCsvCnrCVlrf---DHHCpWLnNCIG~ 173 (684)
..||..|+.+-- +...||..||.|-.+- =-||.--|.|+..
T Consensus 2 ~YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 2 EYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp SEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred ceECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCc
Confidence 358999987732 4468999999998653 2399999999864
No 7
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.81 E-value=7 Score=31.73 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=20.1
Q ss_pred ccccccccccc--ccCCCCCCCccCCcccc
Q 005664 131 DDALFCTLCNA--EVRRFSKHCRSCDKCVD 158 (684)
Q Consensus 131 d~~~fC~tC~i--~KPpRShHCsvCnrCVl 158 (684)
.....|..|+. -...|-|||+.|++.+-
T Consensus 7 ~~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC 36 (88)
T d1wfka_ 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFC 36 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEE
T ss_pred cccCcCcccCchhccccccccccccChhhC
Confidence 44556888875 33567899999999543
No 8
>d1wv8a1 d.304.1.1 (A:2-72) Hypothetical protein TTHA1013 {Thermus thermophilus [TaxId: 274]}
Probab=33.17 E-value=7.2 Score=30.89 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=13.1
Q ss_pred cceeeccCCCceeeec
Q 005664 546 TSVVWDQEAGRYVSVP 561 (684)
Q Consensus 546 ~sv~wd~eagr~vs~~ 561 (684)
...+||.|||-+|--.
T Consensus 5 V~a~WD~EAgVWva~s 20 (71)
T d1wv8a1 5 VQALWDGEAGVWVAES 20 (71)
T ss_dssp EEEEEETTTTEEEEEC
T ss_pred EEEEEcccCCEEEEEc
Confidence 4579999999999654
No 9
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=32.95 E-value=7.7 Score=30.25 Aligned_cols=24 Identities=25% Similarity=0.718 Sum_probs=17.6
Q ss_pred ccccccc--ccCCCCCCCccCCcccc
Q 005664 135 FCTLCNA--EVRRFSKHCRSCDKCVD 158 (684)
Q Consensus 135 fC~tC~i--~KPpRShHCsvCnrCVl 158 (684)
.|..|.. -.-.|-|||+.|++.+-
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred ccccCCCcccCccccccccccCCeeC
Confidence 4888875 23467899999998654
No 10
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=30.02 E-value=4.8 Score=36.29 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=19.6
Q ss_pred cccccccccccCCCCCCCccCCccccC
Q 005664 133 ALFCTLCNAEVRRFSKHCRSCDKCVDG 159 (684)
Q Consensus 133 ~~fC~tC~i~KPpRShHCsvCnrCVlr 159 (684)
+.....| +++.+.+||-.|..|+.|
T Consensus 182 ~~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 182 RYHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hhccCCC--CCCCCCCCCCCCHhHHHH
Confidence 4445667 567788999999999987
No 11
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=20.63 E-value=9.8 Score=25.57 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=12.0
Q ss_pred CCCccCCccccCCc
Q 005664 148 KHCRSCDKCVDGFD 161 (684)
Q Consensus 148 hHCsvCnrCVlrfD 161 (684)
..|..|++|..|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 36999999999887
Done!