Query 005665
Match_columns 684
No_of_seqs 328 out of 1656
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:59:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aql_A Poly(A) polymerase; tra 100.0 9.6E-63 3.3E-67 533.5 23.0 282 54-344 3-292 (415)
2 1miw_A TRNA CCA-adding enzyme; 100.0 3E-54 1E-58 465.3 21.6 222 70-303 6-229 (404)
3 3h38_A TRNA nucleotidyl transf 100.0 2.6E-53 8.8E-58 463.0 28.0 226 64-302 11-251 (441)
4 1ou5_A TRNA CCA-adding enzyme, 100.0 1.8E-53 6.2E-58 464.9 19.7 225 68-303 55-288 (448)
5 1vfg_A A-adding enzyme, poly A 100.0 3.7E-52 1.3E-56 446.4 21.9 217 75-303 2-227 (390)
6 4e8j_A Lincosamide resistance 93.0 0.11 3.6E-06 50.2 5.3 54 69-122 8-65 (161)
7 2fcl_A Hypothetical protein TM 87.9 0.76 2.6E-05 44.1 6.2 55 66-121 12-73 (169)
8 2la3_A Uncharacterized protein 81.4 1.3 4.3E-05 43.8 4.5 42 70-111 19-69 (191)
9 3nyb_A Poly(A) RNA polymerase 22.6 2.3E+02 0.0078 29.3 8.3 27 83-111 59-85 (323)
10 1ylq_A Putative nucleotidyltra 21.0 1.2E+02 0.0042 25.6 5.0 38 72-111 4-44 (96)
11 4gxt_A A conserved functionall 20.0 44 0.0015 35.6 2.3 30 68-97 222-251 (385)
No 1
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=100.00 E-value=9.6e-63 Score=533.49 Aligned_cols=282 Identities=28% Similarity=0.445 Sum_probs=246.4
Q ss_pred eeccccccCCccCCCChhHHHHHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhccCcccccccCeE
Q 005665 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC 133 (684)
Q Consensus 54 ~~~~~~~~gI~~~~ip~~a~~VL~~L~~~G~eaYLVGG~VRDlLLGr~PkD~DIvT~a~~eei~k~F~~~~ivG~rF~i~ 133 (684)
+++++++|||++..||+.+..|++.|+++||++|+|||||||+|||++|+||||+|+|+|+++++.|+++..+|++|+++
T Consensus 3 ~~~~~~~h~i~~~~~~~~~~~v~~~l~~~G~~~ylVGG~VRD~LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g~~f~~~ 82 (415)
T 3aql_A 3 TVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLA 82 (415)
T ss_dssp CEECTTTSCCCCGGGSCSCHHHHHHHHHTTCCEEEETHHHHHHHHSSCCSCCEEEESSCHHHHHHHTTTSCCCCCSSSCC
T ss_pred eEecHHhCCcChHhCCHHHHHHHHHHHHCCCeEEEECHHHHHHHcCCCCCCEEEEcCCCHHHHHHHhhhCeEecccCCEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred EEEECCEEEEEeccccccccCC--CC------ceeeecCCCCCCchhhhhhhhhhcccccccccccccCCCCeEeeCcCc
Q 005665 134 RVHIKGSVIEVSSFETVAKHGE--GK------ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANG 205 (684)
Q Consensus 134 ~V~~~G~~IEVatfRte~~~~~--~~------~~v~~s~~~~gt~eeDL~~w~Da~RRDFTINALayd~~~g~IiD~fGG 205 (684)
+|.+++..|||+|||++.+... .. .......+.+|++++|+ .||||||||||||+.++.|+|||||
T Consensus 83 ~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~tl~eDl------~RRDFTINAla~~~~~~~l~D~~gG 156 (415)
T 3aql_A 83 HVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDA------QRRDFTINSLYYSVADFTVRDYVGG 156 (415)
T ss_dssp EEESSSCEEEEEECCC-----------------------CCCCCHHHHH------TTSSBSGGGCEEETTTCCEECSSSH
T ss_pred EEEECCcEEEEeeecccccccccccccccccCCCcccccccCCCHHHHH------hcCCccceeEEEeCCCCeeeCCCCC
Confidence 9999999999999999875320 00 11122334578889996 7999999999999988999999999
Q ss_pred HHHHhcCceeecccccccccccHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhCCCHHHHH
Q 005665 206 ISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285 (684)
Q Consensus 206 leDLk~~~IR~v~~p~~rF~EDPlRILRAiRFAARLGF~IdpeT~~aIr~~a~lL~~Is~eRI~~EL~KiL~~~~~~~aL 285 (684)
++||++|+||++++|..+|.|||+|||||||||+++||.|+++|..+|++++..+..++.+|++.|+.|||.++++..+|
T Consensus 157 ~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l 236 (415)
T 3aql_A 157 MKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETY 236 (415)
T ss_dssp HHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHHHHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhcCChHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchhhhhhhhhhhhhhcCCCCCchhHHHHHHHHHHHHHHhCCCCCchhHHHH
Q 005665 286 CLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVG 344 (684)
Q Consensus 286 rlL~e~GLL~~LfPe~a~~~~qq~~~h~~tvd~hll~lL~~Ld~ll~~~rp~~~slwla 344 (684)
++|+++|+|..+||++..+.++.+.+|.++++.|++.. ++.++..+.+..+.+++|
T Consensus 237 ~~l~~~GlL~~~lPe~~~i~~~~q~~h~~~v~~h~L~~---~d~~i~~~~~~~~~L~lA 292 (415)
T 3aql_A 237 KLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKN---TDTRIHNDMRVNPAFLFA 292 (415)
T ss_dssp HHHHHTTCSTTTCHHHHTTCCSSSCCHHHHHHHHHHHH---HHHHHHTTCCCCHHHHHH
T ss_pred HHHHHcCChHHhchhHHHHhccCCcchHHHHHHHHHHH---HHHHHhcCCCCCHHHHHh
Confidence 99999999999999999888766667777777776654 666666666655433333
No 2
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=3e-54 Score=465.35 Aligned_cols=222 Identities=31% Similarity=0.423 Sum_probs=202.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhccCcccccccCeEEEEECCEEEEEecccc
Q 005665 70 QPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFET 149 (684)
Q Consensus 70 ~~a~~VL~~L~~~G~eaYLVGG~VRDlLLGr~PkD~DIvT~a~~eei~k~F~~~~ivG~rF~i~~V~~~G~~IEVatfRt 149 (684)
+.+..|++.|+++|+++|+|||||||+|||++|+|+||+|++.|+++++.|+++..+|.+|++++|.++|..+||+|||+
T Consensus 6 ~~~~~i~~~l~~~g~~~y~VGG~VRD~lLg~~~~D~Di~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~~~~ev~t~R~ 85 (404)
T 1miw_A 6 QEALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPKTIDVGSKHGTVVVVHKGKAYEVTTFKT 85 (404)
T ss_dssp HHHHHHHHHHHHTTCCEEEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCSSEEEEEGGGTEEEEEETTEEEEEEECEE
T ss_pred HHHHHHHHHHHhCCCeEEEECHHHHHHHcCCCCCCEEEEeCCCHHHHHHHhhhhcccCcCCCeEEEEECCeEEEEeeecc
Confidence 34788999999999999999999999999999999999999999999999987777899999999999999999999999
Q ss_pred ccccCCC--CceeeecCCCCCCchhhhhhhhhhcccccccccccccCCCCeEeeCcCcHHHHhcCceeeccccccccccc
Q 005665 150 VAKHGEG--KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227 (684)
Q Consensus 150 e~~~~~~--~~~v~~s~~~~gt~eeDL~~w~Da~RRDFTINALayd~~~g~IiD~fGGleDLk~~~IR~v~~p~~rF~ED 227 (684)
+.+..++ +..|.|. +++++|+ .||||||||||||+ +|.|+|||||++||++|+||++++|..+|.||
T Consensus 86 e~~~~~~~~p~~v~~~----~~l~~Dl------~RRDfTiNAla~~~-~g~l~D~~~G~~Dl~~~~ir~~~~p~~~f~eD 154 (404)
T 1miw_A 86 DGDYEDYRRPESVTFV----RSLEEDL------KRRDFTMNAIAMDE-YGTIIDPFGGREAIRRRIIRTVGEAEKRFRED 154 (404)
T ss_dssp CC---------CCEEC----SCHHHHH------HTSSBSGGGCEECT-TCCEECTTCHHHHHHHTEECBSSCHHHHHHHC
T ss_pred cCCCCCCcCCcccccC----CcHHHHH------HhCCCCcchheeCC-CCCEeCCCCCHHHHhCCeeeecCChHhhHHhh
Confidence 8765444 2245543 4678886 79999999999998 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhhh
Q 005665 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303 (684)
Q Consensus 228 PlRILRAiRFAARLGF~IdpeT~~aIr~~a~lL~~Is~eRI~~EL~KiL~~~~~~~aLrlL~e~GLL~~LfPe~a~ 303 (684)
|+|||||||||+++||.|+++|..+|++++..+..+|.+|++.|+.|||.++++..+|++|+++|+|.. +|++..
T Consensus 155 PlRiLRa~Rfaa~lgf~i~~~T~~ai~~~~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~-lPe~~~ 229 (404)
T 1miw_A 155 ALRMMRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY-LPGLAG 229 (404)
T ss_dssp THHHHHHHHHHHHHCCEECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS-STTCSS
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhh-Ccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 698764
No 3
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=2.6e-53 Score=463.04 Aligned_cols=226 Identities=24% Similarity=0.350 Sum_probs=203.7
Q ss_pred ccCCCChhHHHHHHHH----HHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhcc----CcccccccCeEEE
Q 005665 64 TRAMIPQPSWVVLKIL----KSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR----SEIIGRRFPICRV 135 (684)
Q Consensus 64 ~~~~ip~~a~~VL~~L----~~~G~eaYLVGG~VRDlLLGr~PkD~DIvT~a~~eei~k~F~~----~~ivG~rF~i~~V 135 (684)
....+|+.++.+|+.| +++|+++|+|||||||+|||++|+|+||+|+++|.++.+.+.. ...+|.+|++++|
T Consensus 11 l~~~lp~~~~~~l~~l~~~~~~~G~~aylVGG~VRD~LLg~~~~D~Di~t~~~~~~~~~~~~~~~~~~~~~g~~~gt~~v 90 (441)
T 3h38_A 11 LVERVDPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASL 90 (441)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEEE
T ss_pred HHHhCCHHHHHHHHHHHHHHHHcCCeEEEEcHHHHHHHCCCCCCCeeEEeCCCHHHHHHHHHHHcCCEeccCCcCcEEEE
Confidence 3457899999999999 5899999999999999999999999999999999888776532 2346999999999
Q ss_pred EE-CCEEEEEeccccccccCCCC-ceeeecCCCCCCchhhhhhhhhhcccccccccccccCC---CCeEeeCcCcHHHHh
Q 005665 136 HI-KGSVIEVSSFETVAKHGEGK-ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPF---LNKIYDYANGISDLR 210 (684)
Q Consensus 136 ~~-~G~~IEVatfRte~~~~~~~-~~v~~s~~~~gt~eeDL~~w~Da~RRDFTINALayd~~---~g~IiD~fGGleDLk 210 (684)
.+ +|..|||+|||+++|..++. +.|. ++++++|+ .||||||||||||+. .|+|+|||||++||+
T Consensus 91 ~~~~g~~~ev~t~R~e~~~~~~~~p~V~-----~~~l~eDl------~RRDFTINAla~~~~~~~~g~liD~~gG~~DL~ 159 (441)
T 3h38_A 91 FLKGGLRIDIATARLEYYESPAKLPDVE-----MSTIKKDL------YRRDFTINAMAIKLNPKDFGLLIDFFGGYRDLK 159 (441)
T ss_dssp EETTSCEEEEEECCEECCSSSSSCCEES-----CCCHHHHH------HTSSBGGGSCEEECSGGGTTEEECSSSHHHHHH
T ss_pred EEeCCeEEEEecccccccCCCCCCCccC-----CCCHHHHH------HhccchhhhhhcccCCCCCCeEeCCCCCHHHHh
Confidence 99 88999999999998876553 3332 46788986 799999999999875 489999999999999
Q ss_pred cCceeecccccccccccHHHHHHHHHHHHHhCCCCcHHHHHHHHHhh--hhccCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 005665 211 CLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLS--SSIERLDKSRIMMELNYMLSYGAAESSICLL 288 (684)
Q Consensus 211 ~~~IR~v~~p~~rF~EDPlRILRAiRFAARLGF~IdpeT~~aIr~~a--~lL~~Is~eRI~~EL~KiL~~~~~~~aLrlL 288 (684)
+|+||+++++ +|.|||+|||||+|||++|||.|+++|..+|++++ ..+..+|+|||+.|+.|||.++++..+|++|
T Consensus 160 ~~~iR~v~~~--~F~eDplRiLRa~Rfaa~lgf~i~~~t~~~i~~~~~~~~l~~is~eRi~~El~kll~~~~~~~~l~~l 237 (441)
T 3h38_A 160 EGVIRVLHTL--SFVDDPTRILRAIRFEQRFDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRM 237 (441)
T ss_dssp TTEECBSSTT--HHHHCTTHHHHHHHHHHHTTCEECHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCEEEECCCC--ChhhCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhhchhccCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999975 89999999999999999999999999999999875 6889999999999999999999999999999
Q ss_pred HHcCCchhhhhhhh
Q 005665 289 RRYNLLKILLPFHA 302 (684)
Q Consensus 289 ~e~GLL~~LfPe~a 302 (684)
+++|+|..+||++.
T Consensus 238 ~~~glL~~i~Pel~ 251 (441)
T 3h38_A 238 AQFDVIKHLFPKTY 251 (441)
T ss_dssp HHTTHHHHHSTTCC
T ss_pred HHcCChHHhCcccc
Confidence 99999999999876
No 4
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=1.8e-53 Score=464.94 Aligned_cols=225 Identities=24% Similarity=0.319 Sum_probs=200.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCHHHHHHHhccC----cc-cccccCeEEEEECCEEE
Q 005665 68 IPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS----EI-IGRRFPICRVHIKGSVI 142 (684)
Q Consensus 68 ip~~a~~VL~~L~~~G~eaYLVGG~VRDlLLGr~PkD~DIvT~a~~eei~k~F~~~----~i-vG~rF~i~~V~~~G~~I 142 (684)
+++.+..|++.|+++|+++|+|||||||+|||++|+|+||+|+++|+++++.|+++ .. .|.+|+++++.++|..+
T Consensus 55 ~~~~~~~i~~~l~~~g~~~ylVGG~VRD~LLg~~~~D~Di~~~~~p~~~~~~~~~~g~~~~~~~g~~~gt~~v~~~~~~~ 134 (448)
T 1ou5_A 55 FTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 134 (448)
T ss_dssp SCTTHHHHHHHHHHTTCCEEEESTTTHHHHHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCEEECTTTTCE
T ss_pred HHHHHHHHHHHHHhcCCeEEEeCHHHHHHHcCCCCCCEEEEeCCCHHHHHHHHHHcCCccccCcCcccceEEEEECCEEE
Confidence 77799999999999999999999999999999999999999999999999999863 22 58999999999999999
Q ss_pred EEeccccccccCCCCceeeecCCCCCCchhhhhhhhhhcccccccccccccCCCCeEeeCcCcHHHHhcCceeecccccc
Q 005665 143 EVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222 (684)
Q Consensus 143 EVatfRte~~~~~~~~~v~~s~~~~gt~eeDL~~w~Da~RRDFTINALayd~~~g~IiD~fGGleDLk~~~IR~v~~p~~ 222 (684)
||++||++.|.....+.|.|. .++++|+ .||||||||||||+ +|.|+|||||++||++|+||+|++|..
T Consensus 135 ev~t~R~~~~~~~r~~~v~~~----~~l~eDl------~RRDFTINAla~~~-~g~l~D~~gG~~DL~~~~IR~v~d~~~ 203 (448)
T 1ou5_A 135 EITTLRIDVTTDGRHAEVEFT----TDWQKDA------ERRDLTINSMFLGF-DGTLFDYFNGYEDLKNKKVRFVGHAKQ 203 (448)
T ss_dssp EEEECCS------------SS----CCSSCCG------GGSSBGGGSCEECS-SCBEECSSSHHHHTTTTCCCBSSTTTT
T ss_pred EEEeecccccccCCCCccccC----ccHHHHH------HHcCCChhheeECC-CCCEeCCCCCHHHHhCCeEEecCChHH
Confidence 999999987754434455543 2468886 79999999999999 799999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHh--CC-CCcHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-h
Q 005665 223 SFTEDCARILRGLRIAARL--GL-SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL-L 298 (684)
Q Consensus 223 rF~EDPlRILRAiRFAARL--GF-~IdpeT~~aIr~~a~lL~~Is~eRI~~EL~KiL~~~~~~~aLrlL~e~GLL~~L-f 298 (684)
+|.|||+|||||||||+|| || .|+++|..+|++++..|..+|+||++.|+.|||.++++..+|++|+++|+|..+ |
T Consensus 204 rF~EDPLRiLRa~RFaarl~~gf~~I~~~T~~ai~~~~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~~i~l 283 (448)
T 1ou5_A 204 RIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGL 283 (448)
T ss_dssp TSSSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTC
T ss_pred hhhhCHHHHHHHHHHHHHcCcCCCCcCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHCCCceEecC
Confidence 9999999999999999999 96 999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhh
Q 005665 299 PFHAA 303 (684)
Q Consensus 299 Pe~a~ 303 (684)
|++..
T Consensus 284 Pe~~~ 288 (448)
T 1ou5_A 284 PANAS 288 (448)
T ss_dssp CCCSC
T ss_pred cchhh
Confidence 98875
No 5
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=3.7e-52 Score=446.41 Aligned_cols=217 Identities=28% Similarity=0.406 Sum_probs=191.0
Q ss_pred HHHHHHHCCCcEEEEchhHHHHHhCCCCCCeEEEeCCCH----HHHHHHhccCcccccccCeEEEEECCEEEEEeccccc
Q 005665 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL----KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETV 150 (684)
Q Consensus 75 VL~~L~~~G~eaYLVGG~VRDlLLGr~PkD~DIvT~a~~----eei~k~F~~~~ivG~rF~i~~V~~~G~~IEVatfRte 150 (684)
+.+.++++|+++|+|||||||+|||++|+|+||+|++++ +++++.|+....+|.+|++++|.++|..+||+|||++
T Consensus 2 ~~~~~~~~g~~~y~VGG~VRD~llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~~~~e~~~~R~e 81 (390)
T 1vfg_A 2 VGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRE 81 (390)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSC
T ss_pred hHHHHHHcCCeEEEEChHHHHHHcCCCCCCEEEEEeCChHHHHHHHHHHcCCceeecCCCcEEEEEECCEEEEEeccCcc
Confidence 567899999999999999999999999999999999996 5566667655557999999999999999999999999
Q ss_pred cccCCCCceeeecCCCCCCchhhhhhhhhhcccccccccccccCC---CCeEeeCcCcHHHHhcCceeeccccccccccc
Q 005665 151 AKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPF---LNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227 (684)
Q Consensus 151 ~~~~~~~~~v~~s~~~~gt~eeDL~~w~Da~RRDFTINALayd~~---~g~IiD~fGGleDLk~~~IR~v~~p~~rF~ED 227 (684)
.|..++... ....+++++|+ .||||||||||||+. .|+|+|||||++||++|+||++++ .+|.||
T Consensus 82 ~~~~~~~~p----~v~~~~l~~Dl------~RRDfTiNAla~~~~~~~~g~l~D~~~G~~DL~~~~ir~v~~--~~F~eD 149 (390)
T 1vfg_A 82 TYPRPGAYP----KVEPASLKEDL------IRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHP--VSFIED 149 (390)
T ss_dssp C-------------CCCCCHHHHH------HTSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTTEECBSST--THHHHC
T ss_pred cCCCCCCCC----ccCCCCHHHHH------hhCCCchhheeecccCCCCCeEEeCCCCHHHHhCCeeEeCCc--cchhhC
Confidence 876554321 12346788886 799999999999865 389999999999999999999996 599999
Q ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHhhh--hccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhhhhhhh
Q 005665 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSS--SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303 (684)
Q Consensus 228 PlRILRAiRFAARLGF~IdpeT~~aIr~~a~--lL~~Is~eRI~~EL~KiL~~~~~~~aLrlL~e~GLL~~LfPe~a~ 303 (684)
|+||||++|||+++||.|+++|..+|++++. .+..+|.+|++.|+.|||.++++..+|++|+++|+|..+||++..
T Consensus 150 PlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~lPe~~~ 227 (390)
T 1vfg_A 150 PVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQW 227 (390)
T ss_dssp TTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhhhh
Confidence 9999999999999999999999999999855 799999999999999999999999999999999999999999874
No 6
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A*
Probab=92.98 E-value=0.11 Score=50.22 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHCCCcEEEEchhHHHHHhCC---CCCCeEEEeCC-CHHHHHHHhcc
Q 005665 69 PQPSWVVLKILKSQGFQAYLVGGCVRDLLLRR---VPKDFDVITTA-NLKQIRRQFHR 122 (684)
Q Consensus 69 p~~a~~VL~~L~~~G~eaYLVGG~VRDlLLGr---~PkD~DIvT~a-~~eei~k~F~~ 122 (684)
.+.+..+++.|.+.|.+.+|+|||-=|+++|+ ...|+||.+.. +...+.+.++.
T Consensus 8 ~~d~~evl~~l~~~~v~~~i~GGwAvD~~~G~~tR~H~DiDi~v~~~d~~~l~~~L~~ 65 (161)
T 4e8j_A 8 EKELFYILDLFEHMKVTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQHTQKVIQKLED 65 (161)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEHHHHHHHHHTSCCSCCSEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEcHhhhhHhcCCCCCcCCCeEEeecHHhHHHHHHHHHH
Confidence 36678999999999999999999999999994 47899999864 56777777653
No 7
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=87.86 E-value=0.76 Score=44.07 Aligned_cols=55 Identities=20% Similarity=0.177 Sum_probs=36.4
Q ss_pred CCCChhHHH----HHHHHHHCCCcEEEEchhHHHHHhCCC--CCCeEEEeCC-CHHHHHHHhc
Q 005665 66 AMIPQPSWV----VLKILKSQGFQAYLVGGCVRDLLLRRV--PKDFDVITTA-NLKQIRRQFH 121 (684)
Q Consensus 66 ~~ip~~a~~----VL~~L~~~G~eaYLVGG~VRDlLLGr~--PkD~DIvT~a-~~eei~k~F~ 121 (684)
.||++.... +++.|++.|.+-.|||||.= .+-|.+ |+|+||.|+. +.+.+.+.|.
T Consensus 12 ~~~~~~~~~~L~~i~~~L~~~~V~~~l~Gs~Al-~~~G~~~~~~DIDi~i~~~da~~~~~~L~ 73 (169)
T 2fcl_A 12 HMIRPEYLRVLRXIYDRLXNEXVNWVVTGSLSF-ALQGVPVEVHDIDIQTDEEGAYEIERIFS 73 (169)
T ss_dssp -CCCHHHHHHHHHHHHHHTTSSCCEEEEHHHHH-HHTTCCCCCCSEEEEECHHHHHHHHHHTG
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCEEEeHHHHH-HHcCCCCCCCccEEEecccCHHHHHHHHH
Confidence 356655555 45566788877666666654 887865 8999999964 3455666654
No 8
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae}
Probab=81.42 E-value=1.3 Score=43.79 Aligned_cols=42 Identities=26% Similarity=0.525 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHCCCc-EEEEchhHHHHH----hCCC----CCCeEEEeCC
Q 005665 70 QPSWVVLKILKSQGFQ-AYLVGGCVRDLL----LRRV----PKDFDVITTA 111 (684)
Q Consensus 70 ~~a~~VL~~L~~~G~e-aYLVGG~VRDlL----LGr~----PkD~DIvT~a 111 (684)
+....+|+.+.+.|.+ .||++||||-++ -|++ .+||||+---
T Consensus 19 ~~~m~iL~~~~~L~Lpd~~laAG~vrn~VWn~L~g~~~~~~i~DiDviYFD 69 (191)
T 2la3_A 19 PDMMAILTIIRDLGLKDSWLAAGSVRNFIWNLLSDKSPFDHETDIDVIFFD 69 (191)
T ss_dssp HHHHHHHHHHHHTCCSSCEEETHHHHHHHHGGGTTSCTTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHcCCchhhhhhhhhHhhHHHHhcCCCCCCCCCceeEEEEC
Confidence 4556789999999976 999999999765 4554 4999999754
No 9
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=22.61 E-value=2.3e+02 Score=29.30 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=22.2
Q ss_pred CCcEEEEchhHHHHHhCCCCCCeEEEeCC
Q 005665 83 GFQAYLVGGCVRDLLLRRVPKDFDVITTA 111 (684)
Q Consensus 83 G~eaYLVGG~VRDlLLGr~PkD~DIvT~a 111 (684)
+.+++++|-+++.+ +.+..|+|+++..
T Consensus 59 ~~~v~~fGS~~~g~--~~~~SDiDl~v~~ 85 (323)
T 3nyb_A 59 DADLHVFGSYSTDL--YLPGSDIDCVVTS 85 (323)
T ss_dssp TCCEEEESTTTTTC--CCTTSCEEEEECS
T ss_pred CCEEEEeCccccCC--CCCCCCceEEEec
Confidence 67999999999984 4556999998764
No 10
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=20.97 E-value=1.2e+02 Score=25.55 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=26.4
Q ss_pred HHHHHHHHHH-CC-CcEEEEchhHHHHHhCCCC-CCeEEEeCC
Q 005665 72 SWVVLKILKS-QG-FQAYLVGGCVRDLLLRRVP-KDFDVITTA 111 (684)
Q Consensus 72 a~~VL~~L~~-~G-~eaYLVGG~VRDlLLGr~P-kD~DIvT~a 111 (684)
+..+.+.+++ .| ..+|+.|-..|.-. .+- .|+||++-.
T Consensus 4 l~~i~~~l~~~~~~~~v~LFGS~ArG~~--~~~~SDiDllV~~ 44 (96)
T 1ylq_A 4 MKEIKEITKKDVQDAEIYLYGSVVEGDY--SIGLSDIDVAIVS 44 (96)
T ss_dssp HHHHHHHHHHHCTTCEEEEESHHHHCCS--SSCCCSEEEEEEC
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEEeCCC--CCCCCceEEEEEe
Confidence 4456666665 44 58999999999742 234 699997643
No 11
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=20.01 E-value=44 Score=35.57 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHCCCcEEEEchhHHHHH
Q 005665 68 IPQPSWVVLKILKSQGFQAYLVGGCVRDLL 97 (684)
Q Consensus 68 ip~~a~~VL~~L~~~G~eaYLVGG~VRDlL 97 (684)
+-+.+..+++.|+++|+++|||=|..+|++
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v 251 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIV 251 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHH
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHH
Confidence 568999999999999999999999988875
Done!