Query 005667
Match_columns 684
No_of_seqs 437 out of 3521
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 11:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 1.6E-66 3.4E-71 553.2 35.9 445 207-660 78-558 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 1.8E-64 3.9E-69 521.8 27.5 345 263-634 47-391 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 9.4E-50 2E-54 438.2 31.9 343 265-633 59-401 (412)
4 TIGR00382 clpX endopeptidase C 100.0 3.9E-49 8.4E-54 431.9 31.9 344 264-633 64-407 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 4.6E-41 1E-45 365.0 24.7 285 266-632 1-425 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 7.2E-41 1.6E-45 363.7 24.9 286 265-632 3-427 (443)
7 COG0542 clpA ATP-binding subun 100.0 7.4E-37 1.6E-41 351.8 22.0 279 254-612 464-760 (786)
8 COG1220 HslU ATP-dependent pro 100.0 2.1E-35 4.5E-40 308.1 22.4 286 265-632 3-428 (444)
9 PRK11034 clpA ATP-dependent Cl 100.0 1.9E-31 4.2E-36 311.8 23.6 275 254-611 431-720 (758)
10 CHL00095 clpC Clp protease ATP 100.0 4.3E-30 9.3E-35 305.1 27.0 288 254-612 482-787 (821)
11 TIGR02639 ClpA ATP-dependent C 100.0 5E-30 1.1E-34 301.3 24.3 275 254-611 427-716 (731)
12 TIGR03345 VI_ClpV1 type VI sec 100.0 1.4E-28 3.1E-33 292.0 24.8 279 254-611 539-835 (852)
13 TIGR03346 chaperone_ClpB ATP-d 100.0 1.8E-27 4E-32 283.6 26.7 275 254-611 538-830 (852)
14 PRK10865 protein disaggregatio 100.0 2.3E-27 5.1E-32 282.2 25.4 275 254-611 541-833 (857)
15 KOG1051 Chaperone HSP104 and r 99.9 5.2E-25 1.1E-29 257.0 21.6 287 253-612 534-839 (898)
16 COG3829 RocR Transcriptional r 99.9 2.4E-25 5.2E-30 246.0 16.8 277 278-671 246-536 (560)
17 COG0466 Lon ATP-dependent Lon 99.9 1.4E-23 3.1E-28 236.9 21.0 254 257-613 300-564 (782)
18 KOG2004 Mitochondrial ATP-depe 99.9 1E-23 2.2E-28 236.8 19.5 247 264-613 398-652 (906)
19 COG3604 FhlA Transcriptional r 99.9 4E-24 8.7E-29 233.7 15.6 283 278-672 224-523 (550)
20 TIGR02880 cbbX_cfxQ probable R 99.9 9.7E-23 2.1E-27 215.0 19.7 238 265-613 10-260 (284)
21 COG2204 AtoC Response regulato 99.9 1.5E-23 3.3E-28 231.6 13.4 287 276-671 140-433 (464)
22 CHL00181 cbbX CbbX; Provisiona 99.9 2.3E-22 4.9E-27 212.5 20.4 239 265-613 11-261 (287)
23 KOG0730 AAA+-type ATPase [Post 99.9 9E-23 2E-27 228.7 16.0 220 278-611 435-657 (693)
24 PRK10787 DNA-binding ATP-depen 99.9 8.4E-22 1.8E-26 232.3 24.8 245 264-612 309-561 (784)
25 TIGR00763 lon ATP-dependent pr 99.9 4.1E-22 9E-27 235.8 22.4 255 255-612 295-560 (775)
26 TIGR02881 spore_V_K stage V sp 99.9 2.3E-21 4.9E-26 201.7 22.2 230 272-613 2-245 (261)
27 COG1222 RPT1 ATP-dependent 26S 99.9 4.2E-22 9E-27 210.8 16.4 218 278-609 152-375 (406)
28 COG1223 Predicted ATPase (AAA+ 99.9 7.3E-22 1.6E-26 201.1 13.5 215 278-609 122-338 (368)
29 PF07724 AAA_2: AAA domain (Cd 99.9 3E-22 6.5E-27 196.6 9.6 166 329-534 2-171 (171)
30 KOG0736 Peroxisome assembly fa 99.9 1.3E-21 2.8E-26 221.3 15.8 245 278-632 673-927 (953)
31 KOG0738 AAA+-type ATPase [Post 99.9 6.3E-21 1.4E-25 203.0 16.5 127 279-435 214-342 (491)
32 PF05496 RuvB_N: Holliday junc 99.9 2.5E-20 5.5E-25 188.7 19.9 202 274-601 22-224 (233)
33 KOG0734 AAA+-type ATPase conta 99.9 9.2E-21 2E-25 207.5 16.7 231 266-610 293-525 (752)
34 KOG0733 Nuclear AAA ATPase (VC 99.8 2.9E-20 6.2E-25 206.3 17.9 222 279-609 513-736 (802)
35 KOG0731 AAA+-type ATPase conta 99.8 5.3E-20 1.2E-24 211.7 19.1 221 278-607 312-534 (774)
36 KOG0739 AAA+-type ATPase [Post 99.8 1.1E-19 2.3E-24 188.2 11.4 127 278-435 134-262 (439)
37 TIGR02974 phageshock_pspF psp 99.8 3.4E-19 7.3E-24 191.8 14.9 283 279-671 1-308 (329)
38 PRK05022 anaerobic nitric oxid 99.8 7.8E-19 1.7E-23 199.2 16.7 280 278-672 188-485 (509)
39 CHL00195 ycf46 Ycf46; Provisio 99.8 3.4E-18 7.5E-23 192.3 18.4 217 278-609 229-447 (489)
40 COG2255 RuvB Holliday junction 99.8 4.4E-18 9.5E-23 175.9 17.1 190 274-585 24-213 (332)
41 TIGR01241 FtsH_fam ATP-depende 99.8 9.3E-18 2E-22 189.8 20.4 217 279-606 57-275 (495)
42 KOG0733 Nuclear AAA ATPase (VC 99.8 3.8E-18 8.3E-23 189.6 16.0 181 279-553 192-374 (802)
43 COG0464 SpoVK ATPases of the A 99.8 1.2E-17 2.5E-22 188.7 19.4 220 279-610 244-466 (494)
44 TIGR01243 CDC48 AAA family ATP 99.8 1.2E-17 2.6E-22 197.1 18.7 221 278-611 454-677 (733)
45 PRK11608 pspF phage shock prot 99.8 8.5E-18 1.8E-22 180.7 15.6 284 279-671 8-302 (326)
46 PRK15424 propionate catabolism 99.8 5.1E-18 1.1E-22 192.8 14.3 217 279-604 221-463 (538)
47 PTZ00454 26S protease regulato 99.8 2E-17 4.4E-22 182.1 18.6 221 279-609 147-369 (398)
48 TIGR01817 nifA Nif-specific re 99.7 6.7E-18 1.5E-22 192.5 14.4 221 278-605 197-427 (534)
49 COG2256 MGS1 ATPase related to 99.7 9.7E-18 2.1E-22 180.3 14.5 170 331-604 49-218 (436)
50 KOG0728 26S proteasome regulat 99.7 5.8E-18 1.3E-22 171.9 11.8 178 278-552 148-330 (404)
51 TIGR02329 propionate_PrpR prop 99.7 9.3E-18 2E-22 190.5 14.7 218 279-605 214-449 (526)
52 COG1221 PspF Transcriptional r 99.7 1E-17 2.2E-22 182.8 14.2 224 274-608 75-311 (403)
53 PRK11388 DNA-binding transcrip 99.7 2E-17 4.3E-22 192.4 17.5 216 279-605 327-553 (638)
54 PRK03992 proteasome-activating 99.7 3.5E-17 7.5E-22 180.0 18.4 222 278-609 132-355 (389)
55 COG0465 HflB ATP-dependent Zn 99.7 2.5E-17 5.5E-22 186.8 17.1 177 279-551 152-331 (596)
56 CHL00176 ftsH cell division pr 99.7 4.1E-17 9E-22 188.8 18.6 218 279-607 185-404 (638)
57 KOG0735 AAA+-type ATPase [Post 99.7 2.6E-17 5.7E-22 185.3 15.9 220 279-613 669-892 (952)
58 PRK10820 DNA-binding transcrip 99.7 2.6E-17 5.6E-22 187.2 15.0 272 278-668 205-487 (520)
59 TIGR03689 pup_AAA proteasome A 99.7 8.3E-17 1.8E-21 181.4 18.4 183 279-553 184-378 (512)
60 PLN00020 ribulose bisphosphate 99.7 8.3E-17 1.8E-21 173.1 17.2 177 329-584 147-327 (413)
61 PTZ00361 26 proteosome regulat 99.7 1.1E-16 2.3E-21 178.0 17.6 221 278-609 184-407 (438)
62 KOG0727 26S proteasome regulat 99.7 1E-16 2.2E-21 163.1 13.7 146 279-470 157-304 (408)
63 TIGR02915 PEP_resp_reg putativ 99.7 2.1E-16 4.5E-21 175.6 14.3 248 331-671 163-421 (445)
64 PRK10923 glnG nitrogen regulat 99.7 2.7E-16 5.8E-21 176.0 14.8 199 331-606 162-371 (469)
65 PRK15429 formate hydrogenlyase 99.7 1.9E-16 4.2E-21 185.6 14.2 221 278-605 377-608 (686)
66 KOG0737 AAA+-type ATPase [Post 99.7 3.9E-16 8.4E-21 166.5 14.6 233 270-614 86-319 (386)
67 COG3283 TyrR Transcriptional r 99.7 5.7E-16 1.2E-20 164.0 15.1 240 331-663 228-477 (511)
68 TIGR01242 26Sp45 26S proteasom 99.7 1.3E-15 2.8E-20 165.9 18.6 218 278-609 123-346 (364)
69 TIGR02902 spore_lonB ATP-depen 99.7 8.3E-16 1.8E-20 175.3 17.2 215 279-608 67-314 (531)
70 PRK15115 response regulator Gl 99.7 4E-16 8.6E-21 173.3 14.2 247 331-671 158-414 (444)
71 PRK00080 ruvB Holliday junctio 99.7 7.1E-15 1.5E-19 157.9 21.2 203 279-606 27-230 (328)
72 PRK11361 acetoacetate metaboli 99.7 7.4E-16 1.6E-20 171.4 14.1 256 331-672 167-434 (457)
73 TIGR01818 ntrC nitrogen regula 99.6 1.2E-15 2.6E-20 170.2 14.9 200 331-606 158-367 (463)
74 TIGR00635 ruvB Holliday juncti 99.6 1.5E-14 3.2E-19 153.1 21.1 201 279-603 6-206 (305)
75 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.9E-15 4.1E-20 185.1 14.7 190 328-609 1628-1860(2281)
76 PRK14956 DNA polymerase III su 99.6 5.5E-15 1.2E-19 165.0 16.8 184 279-603 20-227 (484)
77 PRK10733 hflB ATP-dependent me 99.6 1.1E-14 2.4E-19 169.6 18.1 228 269-608 145-374 (644)
78 KOG0726 26S proteasome regulat 99.6 1.2E-15 2.7E-20 157.9 8.2 126 279-434 187-314 (440)
79 PRK14962 DNA polymerase III su 99.6 1.6E-14 3.4E-19 162.5 17.5 185 279-604 16-224 (472)
80 PRK13342 recombination factor 99.6 1.9E-14 4.1E-19 159.5 17.8 166 331-604 37-202 (413)
81 COG3284 AcoR Transcriptional a 99.6 4.1E-15 9E-20 167.7 12.3 196 330-604 336-538 (606)
82 PRK07003 DNA polymerase III su 99.6 2E-14 4.3E-19 166.2 17.3 184 279-603 18-225 (830)
83 KOG0652 26S proteasome regulat 99.6 3.9E-15 8.4E-20 152.3 9.8 180 278-551 172-353 (424)
84 KOG0729 26S proteasome regulat 99.6 8.6E-15 1.9E-19 150.1 12.1 129 278-434 178-306 (435)
85 PLN03025 replication factor C 99.6 2E-14 4.4E-19 153.9 15.2 181 279-601 15-203 (319)
86 KOG0740 AAA+-type ATPase [Post 99.6 7.1E-15 1.5E-19 161.2 11.7 220 278-609 154-374 (428)
87 PRK13341 recombination factor 99.6 3.3E-14 7.2E-19 166.7 17.4 170 331-604 53-223 (725)
88 KOG0741 AAA+-type ATPase [Post 99.6 4.8E-15 1E-19 163.0 9.1 200 331-613 257-462 (744)
89 PRK14960 DNA polymerase III su 99.6 4.7E-14 1E-18 161.7 17.2 185 279-604 17-225 (702)
90 PRK10365 transcriptional regul 99.6 1.9E-14 4.1E-19 159.3 13.5 249 331-671 163-421 (441)
91 PRK12323 DNA polymerase III su 99.6 3.3E-14 7.2E-19 162.6 15.5 184 279-603 18-230 (700)
92 PRK14949 DNA polymerase III su 99.6 6.3E-14 1.4E-18 164.7 17.7 189 279-603 18-225 (944)
93 KOG0651 26S proteasome regulat 99.6 1.4E-14 3E-19 151.5 10.5 128 279-434 134-261 (388)
94 PRK14958 DNA polymerase III su 99.5 8.5E-14 1.8E-18 158.0 17.6 184 279-603 18-225 (509)
95 PRK14961 DNA polymerase III su 99.5 1.3E-13 2.8E-18 150.5 18.2 184 279-603 18-225 (363)
96 KOG2028 ATPase related to the 99.5 2.9E-14 6.3E-19 151.4 12.2 214 331-651 163-380 (554)
97 PF00158 Sigma54_activat: Sigm 99.5 2.3E-14 4.9E-19 140.6 10.6 149 279-491 1-164 (168)
98 TIGR01243 CDC48 AAA family ATP 99.5 8.4E-14 1.8E-18 164.6 17.2 218 279-609 180-399 (733)
99 PF00004 AAA: ATPase family as 99.5 2.7E-14 5.9E-19 130.8 10.1 111 333-469 1-111 (132)
100 PRK07994 DNA polymerase III su 99.5 1.4E-13 3E-18 159.1 17.8 184 279-603 18-225 (647)
101 PF01078 Mg_chelatase: Magnesi 99.5 2.3E-14 5E-19 144.2 9.7 183 278-544 4-206 (206)
102 TIGR02639 ClpA ATP-dependent C 99.5 6E-14 1.3E-18 165.8 14.7 192 273-585 179-381 (731)
103 KOG0989 Replication factor C, 99.5 1.2E-13 2.5E-18 144.7 15.0 179 274-585 34-220 (346)
104 PRK14964 DNA polymerase III su 99.5 4.2E-13 9E-18 151.1 18.9 185 279-604 15-223 (491)
105 PRK06645 DNA polymerase III su 99.5 3.1E-13 6.7E-18 153.0 17.9 190 279-604 23-235 (507)
106 PRK07764 DNA polymerase III su 99.5 2.3E-13 4.9E-18 161.6 17.4 184 279-603 17-226 (824)
107 PRK14952 DNA polymerase III su 99.5 2.9E-13 6.3E-18 155.4 17.5 185 279-604 15-225 (584)
108 KOG0744 AAA+-type ATPase [Post 99.5 5.3E-14 1.1E-18 147.7 9.6 156 331-558 178-345 (423)
109 PRK14957 DNA polymerase III su 99.5 6.2E-13 1.3E-17 151.6 18.9 184 279-603 18-225 (546)
110 TIGR02903 spore_lon_C ATP-depe 99.5 7.2E-13 1.6E-17 153.7 19.5 213 279-606 156-402 (615)
111 PRK14959 DNA polymerase III su 99.5 3.9E-13 8.6E-18 154.4 16.8 184 279-603 18-225 (624)
112 PRK08691 DNA polymerase III su 99.5 3.9E-13 8.6E-18 155.3 16.6 185 279-604 18-226 (709)
113 CHL00081 chlI Mg-protoporyphyr 99.5 5.4E-13 1.2E-17 144.6 16.7 227 279-609 19-305 (350)
114 TIGR03420 DnaA_homol_Hda DnaA 99.5 7.3E-13 1.6E-17 133.7 16.6 163 331-604 39-207 (226)
115 TIGR02030 BchI-ChlI magnesium 99.5 5.7E-13 1.2E-17 144.0 15.9 227 279-609 6-292 (337)
116 PRK14963 DNA polymerase III su 99.5 1E-12 2.2E-17 149.0 18.3 185 279-604 16-223 (504)
117 KOG0742 AAA+-type ATPase [Post 99.5 2.4E-13 5.2E-18 146.1 12.4 193 329-602 383-588 (630)
118 PRK13407 bchI magnesium chelat 99.5 7.6E-13 1.6E-17 142.8 16.3 226 279-608 10-288 (334)
119 PRK14951 DNA polymerase III su 99.5 8.5E-13 1.8E-17 152.2 17.6 184 279-603 18-230 (618)
120 TIGR02640 gas_vesic_GvpN gas v 99.5 3.9E-12 8.5E-17 132.9 20.9 156 331-551 22-196 (262)
121 TIGR02442 Cob-chelat-sub cobal 99.5 9.6E-13 2.1E-17 153.3 17.9 221 278-602 5-280 (633)
122 PRK05563 DNA polymerase III su 99.5 1.3E-12 2.8E-17 150.1 17.9 186 278-604 17-226 (559)
123 PRK12402 replication factor C 99.5 2E-12 4.2E-17 138.1 17.9 191 279-603 17-231 (337)
124 PRK14965 DNA polymerase III su 99.5 1.5E-12 3.2E-17 150.1 18.1 185 279-604 18-226 (576)
125 PRK14969 DNA polymerase III su 99.4 9.9E-13 2.2E-17 150.0 16.0 185 279-604 18-226 (527)
126 KOG0732 AAA+-type ATPase conta 99.4 8.4E-13 1.8E-17 156.4 15.0 217 279-608 267-491 (1080)
127 TIGR00368 Mg chelatase-related 99.4 1.9E-12 4E-17 146.6 16.6 249 279-613 194-484 (499)
128 PRK14955 DNA polymerase III su 99.4 2.6E-12 5.6E-17 141.9 17.3 189 279-603 18-233 (397)
129 PRK07133 DNA polymerase III su 99.4 3.2E-12 7E-17 148.9 18.3 189 279-603 20-224 (725)
130 COG0714 MoxR-like ATPases [Gen 99.4 1.5E-12 3.2E-17 140.2 14.5 130 267-444 14-147 (329)
131 PHA02544 44 clamp loader, smal 99.4 5.2E-12 1.1E-16 134.3 18.5 191 279-602 23-213 (316)
132 PRK08451 DNA polymerase III su 99.4 3.3E-12 7.2E-17 145.1 17.9 185 279-604 16-224 (535)
133 TIGR03345 VI_ClpV1 type VI sec 99.4 1.4E-12 3E-17 156.2 15.5 191 274-585 185-386 (852)
134 PRK06305 DNA polymerase III su 99.4 3.5E-12 7.6E-17 143.1 17.7 184 279-603 19-227 (451)
135 PRK05896 DNA polymerase III su 99.4 2.7E-12 5.8E-17 147.0 16.8 184 279-603 18-225 (605)
136 PRK06647 DNA polymerase III su 99.4 2.7E-12 5.9E-17 147.2 16.9 184 279-603 18-225 (563)
137 TIGR02397 dnaX_nterm DNA polym 99.4 4.2E-12 9.2E-17 136.8 17.3 185 279-604 16-224 (355)
138 PRK08903 DnaA regulatory inact 99.4 4.2E-12 9.2E-17 129.0 16.2 160 331-606 43-207 (227)
139 PRK07940 DNA polymerase III su 99.4 1.9E-12 4.1E-17 142.7 14.5 117 279-434 7-142 (394)
140 smart00350 MCM minichromosome 99.4 4.5E-12 9.7E-17 144.3 17.6 251 271-606 197-484 (509)
141 PRK14970 DNA polymerase III su 99.4 6.5E-12 1.4E-16 136.8 18.0 190 279-604 19-215 (367)
142 PRK14948 DNA polymerase III su 99.4 6.9E-12 1.5E-16 145.4 18.3 190 279-602 18-226 (620)
143 PRK04195 replication factor C 99.4 1.2E-11 2.7E-16 139.8 19.8 187 279-601 16-205 (482)
144 PRK14953 DNA polymerase III su 99.4 1.4E-11 3.1E-16 139.3 19.4 189 279-603 18-225 (486)
145 KOG0730 AAA+-type ATPase [Post 99.4 4.5E-12 9.8E-17 143.4 15.2 214 278-605 185-400 (693)
146 PRK09111 DNA polymerase III su 99.4 7.8E-12 1.7E-16 144.3 17.3 190 279-604 26-239 (598)
147 TIGR01650 PD_CobS cobaltochela 99.4 4.2E-12 9.2E-17 136.0 14.0 160 331-551 65-231 (327)
148 PRK08084 DNA replication initi 99.4 1.4E-11 3E-16 126.9 17.2 68 523-606 148-217 (235)
149 PRK13531 regulatory ATPase Rav 99.4 1.6E-11 3.5E-16 137.2 19.0 232 268-608 11-266 (498)
150 COG2812 DnaX DNA polymerase II 99.4 2.1E-12 4.4E-17 145.5 12.0 191 279-605 18-227 (515)
151 PRK14954 DNA polymerase III su 99.4 1.4E-11 3.1E-16 142.5 18.8 190 279-604 18-234 (620)
152 PRK11034 clpA ATP-dependent Cl 99.4 6.3E-12 1.4E-16 148.4 15.8 190 274-584 184-384 (758)
153 PRK00440 rfc replication facto 99.4 1.2E-11 2.6E-16 130.9 16.0 184 279-603 19-208 (319)
154 PTZ00111 DNA replication licen 99.3 1.3E-11 2.9E-16 145.8 17.0 160 271-470 444-610 (915)
155 PRK14971 DNA polymerase III su 99.3 2.2E-11 4.7E-16 141.3 17.8 184 279-603 19-227 (614)
156 PRK14950 DNA polymerase III su 99.3 3E-11 6.5E-16 139.7 18.7 185 279-604 18-227 (585)
157 CHL00095 clpC Clp protease ATP 99.3 1.3E-11 2.7E-16 147.9 15.9 190 274-585 177-377 (821)
158 PRK06893 DNA replication initi 99.3 1.9E-11 4.1E-16 125.3 14.5 165 331-604 40-209 (229)
159 TIGR00362 DnaA chromosomal rep 99.3 2.7E-11 5.8E-16 134.0 16.8 173 331-607 137-319 (405)
160 TIGR00764 lon_rel lon-related 99.3 1.9E-11 4.2E-16 141.6 16.1 141 391-602 213-367 (608)
161 PRK10865 protein disaggregatio 99.3 1.9E-11 4.1E-16 146.8 15.3 167 273-551 175-352 (857)
162 TIGR02928 orc1/cdc6 family rep 99.3 6.1E-11 1.3E-15 128.4 17.9 213 278-608 16-256 (365)
163 COG1224 TIP49 DNA helicase TIP 99.3 3.5E-11 7.7E-16 128.2 15.5 61 521-600 343-403 (450)
164 PF00308 Bac_DnaA: Bacterial d 99.3 4.7E-11 1E-15 121.8 15.8 172 331-606 35-216 (219)
165 PRK00411 cdc6 cell division co 99.3 1.3E-10 2.8E-15 127.2 20.1 212 277-607 30-263 (394)
166 COG0606 Predicted ATPase with 99.3 2.3E-11 4.9E-16 134.4 13.9 179 278-545 180-384 (490)
167 PRK05642 DNA replication initi 99.3 8.4E-11 1.8E-15 121.0 17.2 168 331-608 46-218 (234)
168 PF06068 TIP49: TIP49 C-termin 99.3 2E-11 4.4E-16 131.6 13.0 62 278-366 25-88 (398)
169 PRK00149 dnaA chromosomal repl 99.3 2.4E-11 5.2E-16 136.3 14.0 176 331-607 149-331 (450)
170 PRK08727 hypothetical protein; 99.3 9E-11 2E-15 120.7 17.2 168 331-608 42-214 (233)
171 PRK14086 dnaA chromosomal repl 99.3 9.9E-11 2.1E-15 134.4 18.8 176 331-607 315-497 (617)
172 KOG2170 ATPase of the AAA+ sup 99.3 6.7E-11 1.4E-15 123.9 15.2 231 266-583 71-317 (344)
173 PF07728 AAA_5: AAA domain (dy 99.3 2.6E-12 5.7E-17 120.4 3.8 123 332-470 1-124 (139)
174 TIGR03346 chaperone_ClpB ATP-d 99.3 4.2E-11 9E-16 144.0 14.3 190 274-584 171-371 (852)
175 PTZ00112 origin recognition co 99.3 1.6E-10 3.4E-15 135.0 18.3 205 278-604 756-987 (1164)
176 TIGR02031 BchD-ChlD magnesium 99.2 9.8E-11 2.1E-15 135.4 15.6 201 331-601 17-233 (589)
177 KOG0743 AAA+-type ATPase [Post 99.2 1.5E-10 3.2E-15 127.1 16.0 142 331-553 236-383 (457)
178 PHA02244 ATPase-like protein 99.2 3.4E-10 7.3E-15 123.1 18.5 109 331-469 120-230 (383)
179 PF07726 AAA_3: ATPase family 99.2 2.9E-12 6.2E-17 120.0 2.1 111 332-470 1-113 (131)
180 PRK14088 dnaA chromosomal repl 99.2 1.5E-10 3.3E-15 129.6 16.2 177 331-607 131-314 (440)
181 KOG0991 Replication factor C, 99.2 5.9E-11 1.3E-15 120.4 11.3 106 278-434 28-138 (333)
182 PRK12422 chromosomal replicati 99.2 1.1E-10 2.4E-15 130.8 13.9 171 331-605 142-320 (445)
183 COG0542 clpA ATP-binding subun 99.2 3.8E-10 8.3E-15 131.9 17.0 198 267-585 161-369 (786)
184 PRK06620 hypothetical protein; 99.2 9E-10 2E-14 112.1 17.1 63 525-603 130-194 (214)
185 PRK14087 dnaA chromosomal repl 99.2 4.3E-10 9.4E-15 126.3 16.1 179 331-608 142-329 (450)
186 PRK09112 DNA polymerase III su 99.2 9.2E-10 2E-14 119.9 17.7 186 279-599 25-241 (351)
187 PRK09862 putative ATP-dependen 99.1 1.9E-09 4.1E-14 122.2 18.1 229 331-613 211-477 (506)
188 PRK13765 ATP-dependent proteas 99.1 3.7E-10 7.9E-15 131.2 12.6 48 274-355 28-75 (637)
189 TIGR00678 holB DNA polymerase 99.1 9.5E-10 2.1E-14 108.8 12.9 143 331-585 15-181 (188)
190 PRK07471 DNA polymerase III su 99.1 3.1E-09 6.6E-14 116.5 17.3 111 279-434 21-166 (365)
191 KOG1942 DNA helicase, TBP-inte 99.1 3.1E-09 6.7E-14 111.0 15.9 62 521-601 349-410 (456)
192 COG1241 MCM2 Predicted ATPase 99.0 1.3E-09 2.8E-14 126.3 13.5 251 272-604 281-570 (682)
193 cd00009 AAA The AAA+ (ATPases 99.0 1.3E-09 2.8E-14 99.4 10.7 87 331-434 20-109 (151)
194 COG1474 CDC6 Cdc6-related prot 99.0 6.8E-09 1.5E-13 113.7 17.9 209 279-608 19-247 (366)
195 PRK05564 DNA polymerase III su 99.0 2E-09 4.4E-14 115.2 12.8 105 279-434 6-118 (313)
196 PRK09087 hypothetical protein; 99.0 2.7E-09 6E-14 109.5 12.9 69 524-608 135-205 (226)
197 KOG1969 DNA replication checkp 99.0 9.1E-09 2E-13 117.9 17.6 230 279-602 273-511 (877)
198 COG4650 RtcR Sigma54-dependent 99.0 2.6E-09 5.7E-14 111.5 12.0 199 331-604 209-424 (531)
199 PRK07399 DNA polymerase III su 99.0 8.7E-09 1.9E-13 110.8 16.2 112 278-434 5-149 (314)
200 COG1239 ChlI Mg-chelatase subu 99.0 5.3E-09 1.1E-13 114.4 14.6 176 275-553 15-232 (423)
201 COG0470 HolB ATPase involved i 99.0 3.6E-09 7.8E-14 112.0 13.1 86 331-434 25-134 (325)
202 PRK04132 replication factor C 99.0 3.7E-09 8E-14 125.7 14.5 170 325-603 559-736 (846)
203 KOG0480 DNA replication licens 99.0 8.3E-09 1.8E-13 116.6 15.8 254 271-609 339-624 (764)
204 smart00763 AAA_PrkA PrkA AAA d 99.0 8.5E-09 1.8E-13 112.1 15.2 60 278-363 52-118 (361)
205 PRK13406 bchD magnesium chelat 99.0 7.6E-09 1.7E-13 119.4 15.3 195 331-601 26-225 (584)
206 PRK08058 DNA polymerase III su 99.0 5.9E-09 1.3E-13 112.6 13.5 111 279-434 7-135 (329)
207 PF05673 DUF815: Protein of un 98.9 2.4E-08 5.2E-13 103.1 16.8 176 279-553 29-207 (249)
208 PF14532 Sigma54_activ_2: Sigm 98.9 3.5E-10 7.6E-15 106.8 3.0 70 331-434 22-94 (138)
209 PF13177 DNA_pol3_delta2: DNA 98.9 1.5E-08 3.2E-13 98.9 13.2 104 281-434 1-127 (162)
210 KOG0478 DNA replication licens 98.9 6.1E-09 1.3E-13 118.5 11.2 246 271-600 423-698 (804)
211 TIGR03015 pepcterm_ATPase puta 98.9 7.8E-08 1.7E-12 99.6 17.9 72 526-609 178-249 (269)
212 PF00493 MCM: MCM2/3/5 family 98.9 1.4E-09 3.1E-14 117.6 4.4 257 271-610 18-308 (331)
213 KOG0735 AAA+-type ATPase [Post 98.9 2.8E-08 6E-13 113.6 14.7 194 328-608 429-626 (952)
214 PRK05707 DNA polymerase III su 98.8 3.7E-08 8E-13 106.6 13.5 130 331-551 23-176 (328)
215 COG0593 DnaA ATPase involved i 98.7 1.5E-07 3.2E-12 104.0 14.1 71 523-609 225-297 (408)
216 PRK11331 5-methylcytosine-spec 98.7 4.7E-07 1E-11 101.1 16.2 123 331-471 195-336 (459)
217 PRK06871 DNA polymerase III su 98.6 4.1E-07 9E-12 98.3 14.7 129 331-551 25-177 (325)
218 PRK08769 DNA polymerase III su 98.6 4.4E-07 9.6E-12 97.8 14.7 91 331-435 27-139 (319)
219 KOG2680 DNA helicase TIP49, TB 98.6 6.6E-07 1.4E-11 94.1 15.3 62 278-366 41-104 (454)
220 TIGR00602 rad24 checkpoint pro 98.6 3E-07 6.4E-12 107.1 14.0 70 524-604 257-329 (637)
221 smart00382 AAA ATPases associa 98.6 1.4E-07 3E-12 84.8 8.7 76 331-410 3-93 (148)
222 KOG0736 Peroxisome assembly fa 98.6 3.3E-07 7.1E-12 105.9 12.5 181 331-606 432-613 (953)
223 PRK07993 DNA polymerase III su 98.6 5.9E-07 1.3E-11 97.5 13.4 87 330-435 24-134 (334)
224 PRK06964 DNA polymerase III su 98.5 6.4E-07 1.4E-11 97.5 12.2 27 330-356 21-47 (342)
225 KOG2227 Pre-initiation complex 98.5 1.3E-06 2.7E-11 96.8 14.2 206 278-604 151-377 (529)
226 KOG0477 DNA replication licens 98.5 1.4E-07 3E-12 106.6 4.8 155 271-470 443-599 (854)
227 PRK06090 DNA polymerase III su 98.4 2.5E-06 5.4E-11 92.1 14.3 86 331-435 26-134 (319)
228 KOG2035 Replication factor C, 98.4 2.3E-06 5.1E-11 89.4 13.1 163 331-599 35-226 (351)
229 PF06309 Torsin: Torsin; Inte 98.4 2.4E-06 5.1E-11 80.2 11.2 65 265-354 13-77 (127)
230 KOG0741 AAA+-type ATPase [Post 98.4 1.1E-05 2.4E-10 90.4 18.1 93 330-434 538-633 (744)
231 PRK12377 putative replication 98.4 1.2E-06 2.6E-11 91.4 9.9 83 331-435 102-191 (248)
232 COG2607 Predicted ATPase (AAA+ 98.4 1.4E-05 3.1E-10 82.2 17.2 173 279-552 62-238 (287)
233 KOG0481 DNA replication licens 98.4 1.4E-06 3.1E-11 96.8 10.6 256 271-610 325-621 (729)
234 PF13173 AAA_14: AAA domain 98.4 2.3E-06 4.9E-11 79.8 10.3 70 331-408 3-74 (128)
235 PRK08699 DNA polymerase III su 98.4 2E-06 4.3E-11 93.1 10.6 87 331-434 22-138 (325)
236 PF01637 Arch_ATPase: Archaeal 98.3 4.3E-06 9.3E-11 83.4 11.7 48 524-584 176-223 (234)
237 PRK08116 hypothetical protein; 98.3 1.3E-06 2.8E-11 92.1 8.2 85 331-434 115-205 (268)
238 COG5271 MDN1 AAA ATPase contai 98.3 2.2E-06 4.8E-11 104.2 10.2 155 331-554 1544-1704(4600)
239 KOG0990 Replication factor C, 98.2 1.7E-06 3.6E-11 92.0 6.6 85 331-434 63-156 (360)
240 PF05621 TniB: Bacterial TniB 98.2 5.4E-05 1.2E-09 80.8 16.9 114 271-410 28-160 (302)
241 PRK05917 DNA polymerase III su 98.2 1.8E-05 3.9E-10 84.3 13.1 88 331-435 20-121 (290)
242 PF10431 ClpB_D2-small: C-term 98.2 3.1E-06 6.7E-11 73.0 6.1 68 540-611 1-68 (81)
243 PF13401 AAA_22: AAA domain; P 98.1 2E-06 4.3E-11 79.1 4.4 36 331-366 5-48 (131)
244 COG5271 MDN1 AAA ATPase contai 98.1 1.6E-05 3.4E-10 97.2 12.8 146 331-552 889-1046(4600)
245 PF12775 AAA_7: P-loop contain 98.1 1.3E-05 2.8E-10 84.7 10.0 200 331-605 34-254 (272)
246 COG1484 DnaC DNA replication p 98.1 1E-05 2.3E-10 84.6 8.6 70 331-410 106-182 (254)
247 PF03215 Rad17: Rad17 cell cyc 98.1 7.3E-05 1.6E-09 85.7 16.0 94 331-434 46-161 (519)
248 PRK07132 DNA polymerase III su 98.1 7.2E-05 1.6E-09 80.2 14.6 83 331-434 19-115 (299)
249 PRK07276 DNA polymerase III su 98.0 5.8E-05 1.2E-09 80.6 13.6 89 331-435 25-130 (290)
250 PRK08181 transposase; Validate 98.0 8.8E-06 1.9E-10 85.9 7.1 86 330-434 106-194 (269)
251 KOG1514 Origin recognition com 98.0 4.5E-05 9.8E-10 88.1 13.1 180 331-606 423-628 (767)
252 PRK07952 DNA replication prote 98.0 1.9E-05 4.2E-10 82.2 9.0 82 331-434 100-189 (244)
253 KOG0479 DNA replication licens 98.0 0.00015 3.2E-09 82.3 15.9 134 271-448 295-437 (818)
254 KOG0482 DNA replication licens 98.0 6.9E-06 1.5E-10 91.4 5.0 138 271-447 336-477 (721)
255 PRK06526 transposase; Provisio 98.0 7.2E-06 1.6E-10 85.9 4.6 87 329-434 97-186 (254)
256 PF01695 IstB_IS21: IstB-like 97.9 1.2E-05 2.6E-10 79.7 5.7 82 331-434 48-135 (178)
257 PRK06835 DNA replication prote 97.9 3.2E-05 6.9E-10 84.0 9.0 82 331-434 184-273 (329)
258 PF00910 RNA_helicase: RNA hel 97.9 4.5E-05 9.8E-10 69.2 7.7 83 333-439 1-83 (107)
259 PRK06921 hypothetical protein; 97.9 2.5E-05 5.4E-10 82.3 6.7 36 331-366 118-157 (266)
260 PF12774 AAA_6: Hydrolytic ATP 97.9 0.0003 6.4E-09 72.9 14.4 67 331-410 33-99 (231)
261 PRK05818 DNA polymerase III su 97.8 0.00018 3.9E-09 75.5 12.5 89 330-435 7-114 (261)
262 PRK09183 transposase/IS protei 97.8 3.6E-05 7.8E-10 80.8 6.1 87 330-434 102-191 (259)
263 PF05729 NACHT: NACHT domain 97.8 0.00043 9.3E-09 65.5 12.9 23 332-354 2-24 (166)
264 PF07693 KAP_NTPase: KAP famil 97.7 0.00096 2.1E-08 71.1 15.2 138 395-604 172-320 (325)
265 PRK08939 primosomal protein Dn 97.6 9.9E-05 2.2E-09 79.4 6.7 69 331-409 157-231 (306)
266 PF08298 AAA_PrkA: PrkA AAA do 97.5 0.0018 3.9E-08 70.7 13.9 60 277-362 61-121 (358)
267 PF13191 AAA_16: AAA ATPase do 97.5 0.00019 4.1E-09 69.5 5.8 59 279-366 2-63 (185)
268 KOG1808 AAA ATPase containing 97.4 0.00017 3.6E-09 91.4 6.5 116 331-461 441-560 (1856)
269 PF13207 AAA_17: AAA domain; P 97.4 0.00014 3E-09 66.2 4.0 31 333-363 2-32 (121)
270 COG3267 ExeA Type II secretory 97.4 0.0016 3.4E-08 68.1 12.1 69 525-610 185-253 (269)
271 PF10923 DUF2791: P-loop Domai 97.3 0.0089 1.9E-07 66.9 17.9 161 395-613 239-403 (416)
272 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0059 1.3E-07 69.5 16.3 32 331-362 111-142 (634)
273 COG0464 SpoVK ATPases of the A 97.3 0.00037 7.9E-09 79.4 6.7 97 329-435 17-113 (494)
274 cd01120 RecA-like_NTPases RecA 97.3 0.00047 1E-08 64.6 6.3 32 333-364 2-36 (165)
275 PRK00131 aroK shikimate kinase 97.2 0.0003 6.6E-09 67.6 4.4 33 330-362 4-36 (175)
276 PHA00729 NTP-binding motif con 97.2 0.00068 1.5E-08 69.9 6.2 25 331-355 18-42 (226)
277 PF03266 NTPase_1: NTPase; In 97.1 0.0012 2.5E-08 65.1 6.8 23 332-354 1-23 (168)
278 PRK15455 PrkA family serine pr 97.1 0.00071 1.5E-08 77.9 5.7 59 279-363 78-137 (644)
279 PRK08118 topology modulation p 97.1 0.00051 1.1E-08 67.4 4.0 33 331-363 2-34 (167)
280 PF13604 AAA_30: AAA domain; P 97.0 0.002 4.3E-08 64.8 8.3 89 331-434 19-118 (196)
281 PRK13947 shikimate kinase; Pro 97.0 0.00058 1.3E-08 66.1 4.2 32 332-363 3-34 (171)
282 KOG2543 Origin recognition com 97.0 0.012 2.7E-07 64.6 14.5 63 275-366 4-66 (438)
283 PRK10536 hypothetical protein; 97.0 0.0042 9.2E-08 65.4 10.5 23 331-353 75-97 (262)
284 cd01128 rho_factor Transcripti 97.0 0.0014 3.1E-08 68.6 6.8 80 331-410 17-118 (249)
285 PRK07261 topology modulation p 97.0 0.0013 2.8E-08 64.7 5.9 43 332-375 2-44 (171)
286 PRK03839 putative kinase; Prov 97.0 0.00072 1.6E-08 66.3 4.1 31 332-362 2-32 (180)
287 cd00464 SK Shikimate kinase (S 96.9 0.00087 1.9E-08 63.4 4.1 31 332-362 1-31 (154)
288 PF03969 AFG1_ATPase: AFG1-lik 96.9 0.00074 1.6E-08 74.3 4.1 28 329-356 61-88 (362)
289 PRK00625 shikimate kinase; Pro 96.9 0.0009 2E-08 66.3 4.2 32 332-363 2-33 (173)
290 PRK09376 rho transcription ter 96.9 0.0016 3.5E-08 72.1 6.3 79 331-410 170-271 (416)
291 PRK04296 thymidine kinase; Pro 96.8 0.0042 9E-08 62.1 8.5 31 331-361 3-36 (190)
292 PRK00771 signal recognition pa 96.8 0.17 3.7E-06 57.3 22.1 38 329-366 94-134 (437)
293 TIGR02688 conserved hypothetic 96.8 0.0025 5.3E-08 71.3 7.2 101 331-470 210-313 (449)
294 KOG1051 Chaperone HSP104 and r 96.8 0.0095 2.1E-07 71.9 12.2 76 331-410 209-295 (898)
295 PRK14532 adenylate kinase; Pro 96.8 0.0012 2.6E-08 65.2 4.0 33 332-366 2-34 (188)
296 PF13671 AAA_33: AAA domain; P 96.8 0.00077 1.7E-08 62.9 2.5 30 333-364 2-31 (143)
297 COG1618 Predicted nucleotide k 96.8 0.003 6.6E-08 61.9 6.5 24 331-354 6-29 (179)
298 PRK06217 hypothetical protein; 96.7 0.0014 3.1E-08 64.7 4.3 33 331-363 2-34 (183)
299 PRK13948 shikimate kinase; Pro 96.7 0.0016 3.5E-08 65.0 4.6 34 329-362 9-42 (182)
300 PRK13949 shikimate kinase; Pro 96.7 0.0015 3.2E-08 64.2 4.0 32 331-362 2-33 (169)
301 cd01124 KaiC KaiC is a circadi 96.7 0.0039 8.4E-08 60.9 6.8 31 333-363 2-35 (187)
302 COG1373 Predicted ATPase (AAA+ 96.7 0.015 3.4E-07 64.8 12.1 70 332-409 39-108 (398)
303 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0016 3.6E-08 63.7 3.9 33 333-367 2-34 (183)
304 PRK14530 adenylate kinase; Pro 96.6 0.0019 4.2E-08 65.4 4.5 30 331-360 4-33 (215)
305 cd02020 CMPK Cytidine monophos 96.6 0.0018 4E-08 60.5 3.9 30 333-362 2-31 (147)
306 COG0703 AroK Shikimate kinase 96.6 0.0016 3.4E-08 64.5 3.5 33 331-363 3-35 (172)
307 PRK14531 adenylate kinase; Pro 96.6 0.0022 4.8E-08 63.4 4.4 34 331-366 3-36 (183)
308 cd02021 GntK Gluconate kinase 96.6 0.0019 4.2E-08 61.2 3.7 27 333-359 2-28 (150)
309 TIGR00767 rho transcription te 96.6 0.0043 9.4E-08 69.0 6.9 80 331-410 169-270 (415)
310 cd01428 ADK Adenylate kinase ( 96.6 0.002 4.2E-08 63.4 3.8 32 333-366 2-33 (194)
311 TIGR01618 phage_P_loop phage n 96.5 0.0028 6.2E-08 65.2 4.9 22 330-351 12-33 (220)
312 PF01583 APS_kinase: Adenylyls 96.5 0.0057 1.2E-07 59.8 6.7 37 331-367 3-42 (156)
313 PRK03731 aroL shikimate kinase 96.5 0.0027 5.9E-08 61.6 4.4 33 331-363 3-35 (171)
314 PHA02774 E1; Provisional 96.5 0.016 3.6E-07 67.0 11.2 76 331-440 435-511 (613)
315 cd00227 CPT Chloramphenicol (C 96.5 0.0022 4.7E-08 62.9 3.7 34 331-364 3-36 (175)
316 KOG3347 Predicted nucleotide k 96.5 0.0023 4.9E-08 62.0 3.6 35 331-367 8-42 (176)
317 TIGR01313 therm_gnt_kin carboh 96.5 0.002 4.4E-08 62.0 3.3 27 333-359 1-27 (163)
318 PF00931 NB-ARC: NB-ARC domain 96.5 0.018 3.8E-07 60.2 10.5 23 331-353 20-42 (287)
319 PRK05057 aroK shikimate kinase 96.5 0.0029 6.3E-08 62.3 4.4 33 331-363 5-37 (172)
320 PRK13946 shikimate kinase; Pro 96.5 0.0026 5.6E-08 63.1 4.0 34 330-363 10-43 (184)
321 PRK14974 cell division protein 96.4 0.015 3.3E-07 63.5 10.1 35 330-364 140-177 (336)
322 TIGR01425 SRP54_euk signal rec 96.4 0.51 1.1E-05 53.4 22.3 37 330-366 100-139 (429)
323 TIGR03574 selen_PSTK L-seryl-t 96.4 0.1 2.3E-06 54.0 15.9 34 333-366 2-38 (249)
324 COG3854 SpoIIIAA ncharacterize 96.4 0.007 1.5E-07 62.6 6.9 76 331-407 138-230 (308)
325 COG0529 CysC Adenylylsulfate k 96.3 0.01 2.2E-07 59.1 7.2 72 331-402 24-100 (197)
326 PTZ00088 adenylate kinase 1; P 96.3 0.0035 7.6E-08 64.9 4.2 31 331-361 7-37 (229)
327 PRK06762 hypothetical protein; 96.3 0.0039 8.5E-08 60.2 4.3 36 331-366 3-38 (166)
328 PRK06547 hypothetical protein; 96.3 0.0039 8.5E-08 61.7 4.2 32 331-362 16-47 (172)
329 COG1125 OpuBA ABC-type proline 96.3 0.033 7.1E-07 58.6 10.9 34 321-354 17-51 (309)
330 PF00448 SRP54: SRP54-type pro 96.3 0.02 4.4E-07 57.8 9.4 24 331-354 2-25 (196)
331 PRK08154 anaerobic benzoate ca 96.3 0.007 1.5E-07 65.2 6.4 32 331-362 134-165 (309)
332 PRK05480 uridine/cytidine kina 96.3 0.038 8.2E-07 55.6 11.3 34 331-364 7-41 (209)
333 cd02027 APSK Adenosine 5'-phos 96.3 0.012 2.5E-07 56.6 7.2 34 333-366 2-38 (149)
334 PRK14528 adenylate kinase; Pro 96.3 0.0041 8.9E-08 61.9 4.2 30 331-360 2-31 (186)
335 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0046 9.9E-08 60.4 4.2 34 331-366 4-37 (188)
336 COG1102 Cmk Cytidylate kinase 96.2 0.0042 9E-08 61.0 3.6 28 333-360 3-30 (179)
337 PRK02496 adk adenylate kinase; 96.2 0.0043 9.3E-08 61.1 3.8 29 332-360 3-31 (184)
338 PRK12723 flagellar biosynthesi 96.2 0.027 5.9E-07 62.7 10.5 25 330-354 174-198 (388)
339 PF13238 AAA_18: AAA domain; P 96.2 0.0041 8.8E-08 56.4 3.3 22 333-354 1-22 (129)
340 cd01131 PilT Pilus retraction 96.1 0.015 3.2E-07 58.6 7.3 25 331-355 2-26 (198)
341 cd00046 DEXDc DEAD-like helica 96.1 0.008 1.7E-07 53.8 4.9 23 332-354 2-24 (144)
342 PLN02200 adenylate kinase fami 96.1 0.0061 1.3E-07 63.2 4.5 36 330-367 43-78 (234)
343 TIGR01351 adk adenylate kinase 96.1 0.0053 1.1E-07 62.0 3.9 28 333-360 2-29 (210)
344 PF12780 AAA_8: P-loop contain 96.1 0.021 4.6E-07 60.5 8.5 84 330-434 31-114 (268)
345 COG0563 Adk Adenylate kinase a 96.1 0.006 1.3E-07 60.8 4.1 33 332-366 2-34 (178)
346 PF13521 AAA_28: AAA domain; P 96.1 0.0085 1.8E-07 57.8 5.0 26 333-359 2-27 (163)
347 PLN03210 Resistant to P. syrin 96.0 0.03 6.6E-07 70.4 11.1 27 331-357 208-234 (1153)
348 TIGR01448 recD_rel helicase, p 96.0 0.026 5.6E-07 67.7 9.8 89 331-434 339-441 (720)
349 KOG1968 Replication factor C, 96.0 0.017 3.7E-07 70.0 8.2 76 332-409 359-442 (871)
350 PRK00279 adk adenylate kinase; 96.0 0.0064 1.4E-07 61.7 4.0 33 332-366 2-34 (215)
351 PF14516 AAA_35: AAA-like doma 95.9 0.082 1.8E-06 57.5 12.6 36 331-366 32-70 (331)
352 cd03284 ABC_MutS1 MutS1 homolo 95.9 0.03 6.6E-07 57.2 8.6 23 330-352 30-52 (216)
353 PF09848 DUF2075: Uncharacteri 95.9 0.038 8.2E-07 60.5 9.9 24 331-354 2-25 (352)
354 PRK04040 adenylate kinase; Pro 95.9 0.008 1.7E-07 60.2 4.2 25 331-355 3-27 (188)
355 PTZ00301 uridine kinase; Provi 95.9 0.029 6.3E-07 57.4 8.3 24 331-354 4-27 (210)
356 TIGR02237 recomb_radB DNA repa 95.9 0.014 3.1E-07 58.5 5.9 35 331-365 13-50 (209)
357 PRK06067 flagellar accessory p 95.8 0.021 4.6E-07 58.5 7.1 33 331-363 26-61 (234)
358 PF13245 AAA_19: Part of AAA d 95.8 0.014 3E-07 50.1 4.8 24 331-354 11-35 (76)
359 PRK14527 adenylate kinase; Pro 95.8 0.0074 1.6E-07 60.0 3.5 29 331-359 7-35 (191)
360 PRK04182 cytidylate kinase; Pr 95.8 0.0091 2E-07 57.8 4.0 29 332-360 2-30 (180)
361 PRK11889 flhF flagellar biosyn 95.8 0.13 2.9E-06 57.5 13.2 35 330-364 241-278 (436)
362 PRK08233 hypothetical protein; 95.7 0.013 2.7E-07 57.0 4.8 33 331-363 4-37 (182)
363 TIGR03499 FlhF flagellar biosy 95.7 0.11 2.5E-06 55.2 12.3 36 330-365 194-234 (282)
364 smart00487 DEXDc DEAD-like hel 95.7 0.037 8E-07 52.7 7.9 24 331-354 25-49 (201)
365 PHA02530 pseT polynucleotide k 95.7 0.0097 2.1E-07 63.0 4.2 34 331-366 3-37 (300)
366 COG4608 AppF ABC-type oligopep 95.7 0.033 7.2E-07 58.8 8.0 36 320-355 28-64 (268)
367 PLN02674 adenylate kinase 95.7 0.011 2.3E-07 62.0 4.3 34 331-366 32-65 (244)
368 PF00406 ADK: Adenylate kinase 95.7 0.0095 2.1E-07 56.8 3.5 31 335-367 1-31 (151)
369 PRK09361 radB DNA repair and r 95.6 0.029 6.4E-07 57.0 7.2 34 331-364 24-60 (225)
370 PF05970 PIF1: PIF1-like helic 95.6 0.023 4.9E-07 62.6 6.8 25 331-355 23-47 (364)
371 cd02019 NK Nucleoside/nucleoti 95.6 0.011 2.4E-07 49.4 3.3 22 333-354 2-23 (69)
372 COG0572 Udk Uridine kinase [Nu 95.6 0.094 2E-06 54.0 10.6 27 331-357 9-35 (218)
373 TIGR00235 udk uridine kinase. 95.6 0.058 1.2E-06 54.4 9.1 25 331-355 7-31 (207)
374 TIGR02173 cyt_kin_arch cytidyl 95.6 0.012 2.6E-07 56.6 3.9 29 332-360 2-30 (171)
375 PRK10078 ribose 1,5-bisphospho 95.6 0.011 2.4E-07 58.6 3.7 29 331-359 3-31 (186)
376 PRK03846 adenylylsulfate kinas 95.6 0.04 8.7E-07 55.2 7.7 36 331-366 25-63 (198)
377 PRK14526 adenylate kinase; Pro 95.6 0.013 2.7E-07 60.0 4.1 33 332-366 2-34 (211)
378 PRK14722 flhF flagellar biosyn 95.5 0.066 1.4E-06 59.4 9.9 25 330-354 137-161 (374)
379 TIGR01420 pilT_fam pilus retra 95.5 0.033 7.1E-07 60.9 7.6 25 331-355 123-147 (343)
380 PHA02624 large T antigen; Prov 95.5 0.044 9.6E-07 63.8 8.9 87 331-440 432-521 (647)
381 COG1485 Predicted ATPase [Gene 95.5 0.15 3.3E-06 55.8 12.4 28 328-355 63-90 (367)
382 PF00437 T2SE: Type II/IV secr 95.5 0.033 7.2E-07 58.3 7.3 68 331-406 128-208 (270)
383 COG1936 Predicted nucleotide k 95.5 0.0097 2.1E-07 59.0 3.0 30 332-362 2-31 (180)
384 PRK06696 uridine kinase; Valid 95.5 0.017 3.7E-07 59.0 4.9 37 331-367 23-62 (223)
385 TIGR01526 nadR_NMN_Atrans nico 95.5 0.026 5.6E-07 61.4 6.4 37 331-367 163-199 (325)
386 PLN02199 shikimate kinase 95.5 0.015 3.2E-07 62.5 4.4 33 331-363 103-135 (303)
387 PRK01184 hypothetical protein; 95.5 0.013 2.9E-07 57.5 3.8 29 332-361 3-31 (184)
388 PRK12608 transcription termina 95.5 0.029 6.3E-07 62.1 6.7 101 331-434 134-264 (380)
389 smart00534 MUTSac ATPase domai 95.4 0.052 1.1E-06 53.9 8.0 19 333-351 2-20 (185)
390 TIGR02858 spore_III_AA stage I 95.4 0.045 9.7E-07 58.1 7.9 25 331-355 112-136 (270)
391 cd01130 VirB11-like_ATPase Typ 95.4 0.051 1.1E-06 53.9 7.9 25 331-355 26-50 (186)
392 cd01121 Sms Sms (bacterial rad 95.4 0.022 4.7E-07 63.2 5.7 34 331-364 83-119 (372)
393 PF05272 VirE: Virulence-assoc 95.4 0.036 7.8E-07 56.2 6.8 98 331-470 53-150 (198)
394 PRK11823 DNA repair protein Ra 95.3 0.077 1.7E-06 60.2 9.8 35 331-365 81-118 (446)
395 PF01745 IPT: Isopentenyl tran 95.3 0.017 3.6E-07 59.3 4.0 35 332-366 3-37 (233)
396 PHA01747 putative ATP-dependen 95.2 0.064 1.4E-06 59.0 8.4 84 329-435 189-272 (425)
397 PRK05541 adenylylsulfate kinas 95.2 0.017 3.6E-07 56.5 3.7 26 330-355 7-32 (176)
398 TIGR02012 tigrfam_recA protein 95.2 0.05 1.1E-06 59.2 7.6 76 331-410 56-148 (321)
399 PLN02165 adenylate isopentenyl 95.2 0.017 3.6E-07 63.0 3.9 33 331-363 44-76 (334)
400 PF08433 KTI12: Chromatin asso 95.2 0.044 9.6E-07 58.2 7.0 77 332-409 3-84 (270)
401 PRK04220 2-phosphoglycerate ki 95.2 0.046 1E-06 58.9 7.1 28 331-358 93-120 (301)
402 PF02562 PhoH: PhoH-like prote 95.2 0.067 1.4E-06 54.7 7.9 24 331-354 20-43 (205)
403 PRK14529 adenylate kinase; Pro 95.2 0.017 3.6E-07 59.7 3.6 28 332-359 2-29 (223)
404 PF13086 AAA_11: AAA domain; P 95.2 0.016 3.4E-07 57.7 3.3 22 333-354 20-41 (236)
405 cd01129 PulE-GspE PulE/GspE Th 95.2 0.055 1.2E-06 57.1 7.6 68 331-406 81-160 (264)
406 PRK05800 cobU adenosylcobinami 95.2 0.04 8.6E-07 54.4 6.1 33 332-364 3-35 (170)
407 PF01443 Viral_helicase1: Vira 95.1 0.027 5.9E-07 56.9 5.0 22 333-354 1-22 (234)
408 PLN02796 D-glycerate 3-kinase 95.1 0.66 1.4E-05 51.1 15.8 25 331-355 101-125 (347)
409 PRK00889 adenylylsulfate kinas 95.1 0.029 6.2E-07 54.8 4.9 35 331-365 5-42 (175)
410 TIGR00455 apsK adenylylsulfate 95.1 0.06 1.3E-06 53.0 7.2 36 331-366 19-57 (184)
411 PRK00091 miaA tRNA delta(2)-is 95.1 0.022 4.8E-07 61.5 4.4 35 331-365 5-39 (307)
412 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.039 8.5E-07 56.3 5.9 22 331-352 30-51 (213)
413 KOG3354 Gluconate kinase [Carb 95.1 0.023 5E-07 55.6 3.9 36 330-367 12-47 (191)
414 TIGR00150 HI0065_YjeE ATPase, 95.0 0.025 5.4E-07 54.0 4.1 27 331-357 23-49 (133)
415 TIGR02322 phosphon_PhnN phosph 95.0 0.018 4E-07 56.2 3.3 25 331-355 2-26 (179)
416 TIGR02788 VirB11 P-type DNA tr 95.0 0.048 1E-06 58.7 6.7 24 331-354 145-168 (308)
417 PRK10867 signal recognition pa 95.0 0.28 6.1E-06 55.5 13.0 37 330-366 100-140 (433)
418 PRK13764 ATPase; Provisional 95.0 0.042 9.2E-07 64.3 6.7 25 331-355 258-282 (602)
419 PRK06581 DNA polymerase III su 95.0 0.2 4.3E-06 52.6 10.8 88 331-435 16-115 (263)
420 PLN02459 probable adenylate ki 95.0 0.025 5.4E-07 59.7 4.3 34 331-366 30-63 (261)
421 KOG0058 Peptide exporter, ABC 95.0 0.14 3.1E-06 60.3 10.7 35 320-354 483-518 (716)
422 cd03280 ABC_MutS2 MutS2 homolo 94.9 0.043 9.2E-07 55.1 5.7 20 332-351 30-49 (200)
423 cd00544 CobU Adenosylcobinamid 94.9 0.087 1.9E-06 52.1 7.8 32 333-364 2-33 (169)
424 PRK13900 type IV secretion sys 94.9 0.1 2.2E-06 57.0 9.0 25 331-355 161-185 (332)
425 cd03282 ABC_MSH4_euk MutS4 hom 94.9 0.078 1.7E-06 53.9 7.4 23 331-353 30-52 (204)
426 TIGR02768 TraA_Ti Ti-type conj 94.9 0.068 1.5E-06 64.4 8.1 87 331-434 369-464 (744)
427 PRK12339 2-phosphoglycerate ki 94.9 0.032 6.9E-07 56.5 4.5 28 331-358 4-31 (197)
428 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.059 1.3E-06 51.4 6.0 30 325-354 20-50 (144)
429 PRK09825 idnK D-gluconate kina 94.8 0.031 6.8E-07 55.3 4.3 27 331-357 4-30 (176)
430 PRK04841 transcriptional regul 94.8 0.3 6.4E-06 59.4 13.4 32 331-363 33-64 (903)
431 PF10443 RNA12: RNA12 protein; 94.7 0.76 1.6E-05 51.8 15.2 35 331-367 18-54 (431)
432 cd00983 recA RecA is a bacter 94.7 0.13 2.8E-06 56.1 9.1 80 331-410 56-148 (325)
433 PF06048 DUF927: Domain of unk 94.7 0.19 4.2E-06 53.5 10.2 105 265-410 153-257 (286)
434 COG3842 PotA ABC-type spermidi 94.7 0.02 4.4E-07 62.8 2.8 34 321-354 21-55 (352)
435 cd03287 ABC_MSH3_euk MutS3 hom 94.7 0.21 4.4E-06 51.6 10.0 22 331-352 32-53 (222)
436 COG1067 LonB Predicted ATP-dep 94.6 0.15 3.2E-06 60.4 9.9 37 386-436 216-252 (647)
437 cd00071 GMPK Guanosine monopho 94.6 0.032 7E-07 52.9 3.6 26 333-358 2-27 (137)
438 PRK00300 gmk guanylate kinase; 94.6 0.035 7.6E-07 55.4 4.0 26 330-355 5-30 (205)
439 PRK14737 gmk guanylate kinase; 94.5 0.032 6.9E-07 55.8 3.6 25 330-354 4-28 (186)
440 PRK13975 thymidylate kinase; P 94.5 0.054 1.2E-06 53.6 5.1 27 331-357 3-29 (196)
441 PRK10875 recD exonuclease V su 94.5 0.18 3.9E-06 59.5 10.2 24 331-354 168-191 (615)
442 PF00485 PRK: Phosphoribulokin 94.5 0.031 6.8E-07 55.7 3.4 23 333-355 2-24 (194)
443 PRK13808 adenylate kinase; Pro 94.5 0.035 7.6E-07 60.6 4.0 33 332-366 2-34 (333)
444 PRK13889 conjugal transfer rel 94.5 0.094 2E-06 64.7 8.1 89 331-434 363-458 (988)
445 COG2274 SunT ABC-type bacterio 94.5 0.27 5.9E-06 58.9 11.7 37 318-354 486-523 (709)
446 PRK12338 hypothetical protein; 94.4 0.04 8.6E-07 59.8 4.3 28 331-358 5-32 (319)
447 PRK13851 type IV secretion sys 94.4 0.073 1.6E-06 58.4 6.3 25 331-355 163-187 (344)
448 cd02024 NRK1 Nicotinamide ribo 94.4 0.037 7.9E-07 55.7 3.7 23 333-355 2-24 (187)
449 TIGR03263 guanyl_kin guanylate 94.4 0.028 6.1E-07 54.8 2.8 26 331-356 2-27 (180)
450 COG2804 PulE Type II secretory 94.4 0.15 3.3E-06 58.1 8.9 69 331-407 259-339 (500)
451 TIGR03880 KaiC_arch_3 KaiC dom 94.4 0.2 4.3E-06 50.9 9.1 34 331-364 17-53 (224)
452 cd02023 UMPK Uridine monophosp 94.4 0.053 1.1E-06 54.0 4.8 22 333-354 2-23 (198)
453 cd02028 UMPK_like Uridine mono 94.4 0.05 1.1E-06 53.9 4.5 34 333-366 2-38 (179)
454 cd02022 DPCK Dephospho-coenzym 94.4 0.043 9.3E-07 54.1 4.0 32 333-367 2-33 (179)
455 PF06414 Zeta_toxin: Zeta toxi 94.4 0.044 9.5E-07 55.0 4.2 38 330-367 15-53 (199)
456 PRK05703 flhF flagellar biosyn 94.3 0.35 7.5E-06 54.6 11.7 36 330-365 221-261 (424)
457 PRK11545 gntK gluconate kinase 94.3 0.029 6.3E-07 54.7 2.7 25 336-360 1-25 (163)
458 PLN02840 tRNA dimethylallyltra 94.3 0.047 1E-06 61.3 4.7 35 331-365 22-56 (421)
459 TIGR00174 miaA tRNA isopenteny 94.3 0.046 9.9E-07 58.6 4.3 34 333-366 2-35 (287)
460 cd03243 ABC_MutS_homologs The 94.3 0.073 1.6E-06 53.5 5.5 22 331-352 30-51 (202)
461 PLN02348 phosphoribulokinase 94.3 0.34 7.4E-06 54.1 11.1 26 331-356 50-75 (395)
462 PF04851 ResIII: Type III rest 94.3 0.093 2E-06 50.2 6.1 32 331-362 26-57 (184)
463 PRK05537 bifunctional sulfate 94.2 0.11 2.3E-06 60.9 7.5 36 331-366 393-432 (568)
464 PF00488 MutS_V: MutS domain V 94.2 0.1 2.3E-06 54.1 6.8 24 331-354 44-67 (235)
465 PRK09270 nucleoside triphospha 94.2 0.091 2E-06 53.9 6.2 25 331-355 34-58 (229)
466 PRK08356 hypothetical protein; 94.2 0.058 1.3E-06 53.9 4.6 32 331-365 6-37 (195)
467 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.19 4.1E-06 48.1 7.9 33 323-355 17-50 (157)
468 PRK14021 bifunctional shikimat 94.1 0.049 1.1E-06 63.3 4.5 33 331-363 7-39 (542)
469 COG4088 Predicted nucleotide k 94.1 0.035 7.5E-07 56.7 2.8 24 332-355 3-26 (261)
470 TIGR00959 ffh signal recogniti 94.1 0.59 1.3E-05 52.9 12.9 37 330-366 99-139 (428)
471 TIGR02525 plasmid_TraJ plasmid 94.1 0.14 3E-06 56.9 7.7 24 331-354 150-173 (372)
472 TIGR00064 ftsY signal recognit 94.1 0.13 2.9E-06 54.5 7.3 36 330-365 72-110 (272)
473 cd03222 ABC_RNaseL_inhibitor T 94.1 0.093 2E-06 52.2 5.8 24 331-354 26-49 (177)
474 cd03115 SRP The signal recogni 94.0 0.071 1.5E-06 51.9 4.7 35 332-366 2-39 (173)
475 PRK12337 2-phosphoglycerate ki 94.0 0.15 3.4E-06 57.9 8.0 34 330-363 255-289 (475)
476 PRK13951 bifunctional shikimat 94.0 0.049 1.1E-06 62.5 4.1 32 332-363 2-33 (488)
477 COG0324 MiaA tRNA delta(2)-iso 94.0 0.062 1.3E-06 58.0 4.5 36 331-366 4-39 (308)
478 PRK06761 hypothetical protein; 93.9 0.057 1.2E-06 57.7 4.2 32 331-362 4-35 (282)
479 KOG0922 DEAH-box RNA helicase 93.9 0.17 3.8E-06 59.0 8.2 15 331-345 67-81 (674)
480 PRK14730 coaE dephospho-CoA ki 93.9 0.057 1.2E-06 54.3 3.9 33 332-366 3-35 (195)
481 TIGR00017 cmk cytidylate kinas 93.9 0.063 1.4E-06 55.1 4.2 29 331-359 3-31 (217)
482 PF04665 Pox_A32: Poxvirus A32 93.8 0.75 1.6E-05 48.2 12.0 25 330-354 13-37 (241)
483 COG1124 DppF ABC-type dipeptid 93.8 0.046 9.9E-07 57.0 3.0 34 322-355 24-58 (252)
484 COG1855 ATPase (PilT family) [ 93.7 0.074 1.6E-06 59.7 4.7 24 331-354 264-287 (604)
485 PRK09354 recA recombinase A; P 93.7 0.15 3.2E-06 56.1 7.0 79 331-409 61-152 (349)
486 TIGR01613 primase_Cterm phage/ 93.7 1.7 3.7E-05 46.6 15.1 28 331-358 77-104 (304)
487 cd03286 ABC_MSH6_euk MutS6 hom 93.7 0.22 4.9E-06 51.2 8.0 24 330-353 30-53 (218)
488 KOG0055 Multidrug/pheromone ex 93.7 0.52 1.1E-05 58.9 12.2 42 325-366 1010-1054(1228)
489 PF00625 Guanylate_kin: Guanyl 93.7 0.098 2.1E-06 51.6 5.1 28 331-358 3-30 (183)
490 cd01672 TMPK Thymidine monopho 93.7 0.083 1.8E-06 51.6 4.5 22 333-354 3-24 (200)
491 COG3839 MalK ABC-type sugar tr 93.6 0.046 9.9E-07 59.8 2.9 33 322-354 20-53 (338)
492 PRK07667 uridine kinase; Provi 93.6 0.093 2E-06 52.5 4.9 35 331-365 18-55 (193)
493 PTZ00202 tuzin; Provisional 93.6 0.38 8.2E-06 54.6 9.8 58 279-365 264-321 (550)
494 cd00820 PEPCK_HprK Phosphoenol 93.6 0.049 1.1E-06 50.1 2.5 21 331-351 16-36 (107)
495 PRK14738 gmk guanylate kinase; 93.5 0.066 1.4E-06 54.2 3.7 24 330-353 13-36 (206)
496 PRK08099 bifunctional DNA-bind 93.5 0.072 1.6E-06 59.6 4.3 29 331-359 220-248 (399)
497 COG1643 HrpA HrpA-like helicas 93.5 0.27 5.8E-06 59.8 9.3 17 331-347 66-82 (845)
498 PRK13826 Dtr system oriT relax 93.5 0.19 4.1E-06 62.6 8.2 88 330-434 397-493 (1102)
499 PF05707 Zot: Zonular occluden 93.5 0.14 3E-06 51.3 5.9 72 333-412 3-96 (193)
500 TIGR01447 recD exodeoxyribonuc 93.4 0.16 3.6E-06 59.5 7.2 24 331-354 161-184 (586)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-66 Score=553.24 Aligned_cols=445 Identities=60% Similarity=0.892 Sum_probs=375.4
Q ss_pred cccccCCCCCCCCCCCCCCceEe-ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHhhcccccChHHH
Q 005667 207 SITSSYGDPPEVWQPPGDGIAVR-VNGQGPNLVRGGGSGSGFGSGSKDGCWGGSNLGNKFPTPKEICKGLDKFVIGQERA 285 (684)
Q Consensus 207 ~~~~~~~~~~~~w~~~g~~~~~~-~~~~~~~~~~gGgg~g~~g~~~~~~~~~g~p~~~~~~~~~el~~~Ld~~VvGQd~a 285 (684)
.-+++..+|++.|.+ +.+++.. .....-......+...+ ......|.+-.-.+..++|++|++.||++||||+.|
T Consensus 78 ~~~~s~~~~~~t~~~-s~~f~~~k~~~sfv~~~~~~~~~~~---~~~p~~~~gg~~~k~~P~PkeI~~~Ldk~VVGQe~A 153 (564)
T KOG0745|consen 78 PKCTSQCTPLETFVS-SQGFILCKCNKSFVVLYEADGAKPG---KLSPSNRDGGFQLKPPPTPKEICEYLDKFVVGQEKA 153 (564)
T ss_pred ccccccCCchhhccC-CCCeEEeeccchhhhhhhcccCCCC---CCCccccccccccCCCCChHHHHHHhhhheechhhh
Confidence 346677888888865 4556554 11111111111111000 011112223333347899999999999999999999
Q ss_pred HHHHHHHHHhhHHhHhhh--hhcccccCCCC--------------------------CCCCCCCCCcccccccceEEEEc
Q 005667 286 KKVLSVAVYNHYMRIYNE--SSQKRSAGESS--------------------------SCTTDGVDDDTVELEKSNILLMG 337 (684)
Q Consensus 286 K~~L~~aV~~~~~ri~~~--~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~p~~~vLL~G 337 (684)
|+.|..+|++||+|+++. ...+..++.+. ..++....+..+++.++||||.|
T Consensus 154 KKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~dv~LeKSNvLllG 233 (564)
T KOG0745|consen 154 KKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDEDVELEKSNVLLLG 233 (564)
T ss_pred hheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccccccccceeeecccEEEEC
Confidence 999999999999999883 22211111100 11223334447899999999999
Q ss_pred cCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccC
Q 005667 338 PTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 338 PpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~ 417 (684)
|+|+|||+||+.||+.+++||+..||+.++++||+|++++..+.+++..+.++++++++||+||||+|++.....+.+.+
T Consensus 234 PtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~ 313 (564)
T KOG0745|consen 234 PTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTS 313 (564)
T ss_pred CCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred CCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcc----ccc
Q 005667 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP----VRA 493 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~----~~~ 493 (684)
+|++||+||++||+++||++|+||++|..+..+++.++|||+||+|||.|+|.+||++|.+|+.+++|||+.+ ++.
T Consensus 314 RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~ 393 (564)
T KOG0745|consen 314 RDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRA 393 (564)
T ss_pred ccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 566
Q ss_pred cccc-CCCchhh-hHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcce
Q 005667 494 NMRA-GGVTDAV-VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 494 ~~~~-~~~~~~~-~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l 571 (684)
.+.+ ...+... ...++++.+++.||+.+|++|||.+||+++++|.+|+++++.+|++++.++|.+||+++|...++++
T Consensus 394 ~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L 473 (564)
T KOG0745|consen 394 NMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVEL 473 (564)
T ss_pred hcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeE
Confidence 6655 3444444 4556999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCccc-CCCcceEEcCCChHHH
Q 005667 572 HFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RGCGAKILYGKGALDR 650 (684)
Q Consensus 572 ~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~-~g~~~~i~~~~g~l~~ 650 (684)
.|+++|++.+++.++.+++|||+||.++|++++++|+++|.+ +|..|+||++.|.+.. ++++.+++.+++.++.
T Consensus 474 ~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPGS-----dI~~V~Vdee~v~g~~~~~~s~~~~~~~~~~~~ 548 (564)
T KOG0745|consen 474 HFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPGS-----DIKAVLVDEEAVKGEKEPGYSRKILKGDEVLER 548 (564)
T ss_pred EecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCCCC-----ceEEEEecHHHhcccCCCccchhhhcccchhhh
Confidence 999999999999999999999999999999999999999955 4999999999999887 7889999888888999
Q ss_pred HHHHHhhhhh
Q 005667 651 YLAQHKRKDL 660 (684)
Q Consensus 651 ~l~~~~~~~~ 660 (684)
|+++.+.+..
T Consensus 549 ~~se~~~~~~ 558 (564)
T KOG0745|consen 549 YVSETESKDG 558 (564)
T ss_pred hccccccccC
Confidence 9987776654
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-64 Score=521.84 Aligned_cols=345 Identities=61% Similarity=0.990 Sum_probs=325.8
Q ss_pred CCCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCc
Q 005667 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (684)
Q Consensus 263 ~~~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTG 342 (684)
...++|+++++.||++|+||+.||+.|..+|+|||+|+..... ...+++.++|+||.||+|+|
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~-----------------~~dvEL~KSNILLiGPTGsG 109 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKED-----------------NDDVELSKSNILLIGPTGSG 109 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCC-----------------CCceeeeeccEEEECCCCCc
Confidence 3579999999999999999999999999999999999864421 12478889999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 343 KTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 343 KT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
||+||+.+|+.+++||...|++.++++||+|++++..+..+++.++++++.++.|||||||||++.+..++.++.+|++|
T Consensus 110 KTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG 189 (408)
T COG1219 110 KTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG 189 (408)
T ss_pred HHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
|++|++||++|||++.+||++|+++++..++++|||+|++|||+|+|.+|++++..|...+.|||+.++... ..
T Consensus 190 EGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~------~~ 263 (408)
T COG1219 190 EGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSK------SK 263 (408)
T ss_pred hHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccch------hh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987642 12
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHH
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La 582 (684)
......+++.++++||+++|++|||++|++++..+.+|+++++.+|++++.|++.+||+++|+..++++.|+++|++.+|
T Consensus 264 ~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA 343 (408)
T COG1219 264 KKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIA 343 (408)
T ss_pred hhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCccc
Q 005667 583 KKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 583 ~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~ 634 (684)
+++....+|||+||.++|.++++.|+++|..+ ++.+++|+++++.+..
T Consensus 344 ~~A~~rkTGARGLRsI~E~~lld~MfelPs~~----~v~~v~I~~~~v~~~~ 391 (408)
T COG1219 344 KKAIERKTGARGLRSIIEELLLDVMFELPSLE----DVEKVVITEEVVDGNA 391 (408)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHhhCCCCC----CceEEEEeHHHhCCCC
Confidence 99999999999999999999999999999875 7899999999998765
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=9.4e-50 Score=438.20 Aligned_cols=343 Identities=62% Similarity=0.991 Sum_probs=306.5
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT 344 (684)
.++|+++++.|+++|+||++||+.|..++++||+|+...... ...++.+..++||+||||||||
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~----------------~~~~~~~~~~iLl~Gp~GtGKT 122 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKK----------------DDDVELQKSNILLIGPTGSGKT 122 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhccccc----------------ccccccCCceEEEEcCCCCCHH
Confidence 789999999999999999999999999999999987543210 0134455689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHH
Q 005667 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 345 ~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~ 424 (684)
++|+++|+.++.||+.++++.+.+.+|+|++.+..+..++..+.+.+..+.++||||||||++...+.+.+..+|+++++
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~ 202 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEG 202 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHH
Confidence 99999999999999999999999889999998888888888777778888999999999999998765556788999999
Q ss_pred HHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005667 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~ 504 (684)
+|++||++|||+.+.+|++|+.+.+....+.|+|+|++|||+|+|.++++++..+.....+||..+.... ....
T Consensus 203 vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~------~~~~ 276 (412)
T PRK05342 203 VQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSK------KEKR 276 (412)
T ss_pred HHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccc------cccc
Confidence 9999999999999999999988888888999999999999999999999999999888999998654321 0111
Q ss_pred hHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHh
Q 005667 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ 584 (684)
....+++.+.++||.+++|+|||++|+|.++.|.+|+++++.+|+..+++.+.++|+++++.+++.+.++++++++|++.
T Consensus 277 ~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~ 356 (412)
T PRK05342 277 TEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKK 356 (412)
T ss_pred hhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence 13678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcc
Q 005667 585 AISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 585 ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~ 633 (684)
+|+..+|||+|+++|++.+.+.++++|+.+ .+..++||++.|...
T Consensus 357 ~~~~~~GAR~Lrriie~~l~~~~~~~p~~~----~~~~v~I~~~~v~~~ 401 (412)
T PRK05342 357 AIERKTGARGLRSILEEILLDVMFELPSRE----DVEKVVITKEVVEGK 401 (412)
T ss_pred CCCCCCCCchHHHHHHHHhHHHHHhccccC----CCceEEECHHHhccc
Confidence 999999999999999999999999999754 567899999998754
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=3.9e-49 Score=431.94 Aligned_cols=344 Identities=61% Similarity=0.972 Sum_probs=305.1
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005667 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGK 343 (684)
..++|.++++.|+++|+||++||+.|..++++||+|+....... .+..++..+.++||+|||||||
T Consensus 64 ~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~--------------~~~~~~~~~~~iLL~GP~GsGK 129 (413)
T TIGR00382 64 YLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK--------------SDNGVELSKSNILLIGPTGSGK 129 (413)
T ss_pred CCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc--------------cccccccCCceEEEECCCCcCH
Confidence 36789999999999999999999999999999999864310000 0112445568999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchH
Q 005667 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 344 T~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e 423 (684)
|++|+++|+.++.||+.++++.+.+++|+|++.+..+..++..+++.++.+.++||||||||++++++.....++|++++
T Consensus 130 T~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccch
Confidence 99999999999999999999999888999998888888888888888888999999999999999976666678899999
Q ss_pred HHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005667 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~ 503 (684)
++|+.||++|||..++||+.|+.+.+....+.|+|+|++|||+|+|.++++++..+..+..+||..+.... .
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~--------~ 281 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK--------S 281 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc--------c
Confidence 99999999999999999988888888888999999999999999999999999988877889997543211 1
Q ss_pred hhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHH
Q 005667 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~ 583 (684)
.....+++.+.++|+++++|+|||++|+|.++.|.+|+.+++.+|+..+++++.++|++.++.+++.+.++++|+++|++
T Consensus 282 ~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~ 361 (413)
T TIGR00382 282 KEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAK 361 (413)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHH
Confidence 12346677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcc
Q 005667 584 KAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 584 ~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~ 633 (684)
.+|+..+|||+|+++|++.+.+.|+++|+.+ .+.+++||++.+...
T Consensus 362 ~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~~----~~~~v~i~~~~v~~~ 407 (413)
T TIGR00382 362 KALERKTGARGLRSIVEGLLLDVMFDLPSLE----DLEKVVITKETVLKQ 407 (413)
T ss_pred hCCCCCCCchHHHHHHHHhhHHHHhhCCCCC----CCcEEEECHHHHcCc
Confidence 9999999999999999999999999999865 578899999988654
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=4.6e-41 Score=365.04 Aligned_cols=285 Identities=44% Similarity=0.709 Sum_probs=245.1
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005667 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~ 345 (684)
.+|+++.++|+++|+||++||+.+..++++||+|..... ...-+.+++++||+||||||||+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~------------------~~~~e~~p~~ILLiGppG~GKT~ 62 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNE------------------ELKDEVTPKNILMIGPTGVGKTE 62 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhcccc------------------ccccccCCceEEEECCCCCCHHH
Confidence 379999999999999999999999999999999753211 01113456899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhc---------------------------------ch---
Q 005667 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS---------------------------------DY--- 389 (684)
Q Consensus 346 LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a---------------------------------~~--- 389 (684)
+|+++|+.++.||+.++++.+.+.+|+|.+.+..++.++..+ ..
T Consensus 63 lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~ 142 (441)
T TIGR00390 63 IARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQ 142 (441)
T ss_pred HHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999999888999987777777776554 00
Q ss_pred ------------------------------h-------------------------------------------------
Q 005667 390 ------------------------------N------------------------------------------------- 390 (684)
Q Consensus 390 ------------------------------~------------------------------------------------- 390 (684)
.
T Consensus 143 ~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~ 222 (441)
T TIGR00390 143 TEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKA 222 (441)
T ss_pred cccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHH
Confidence 0
Q ss_pred --------------------hHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCC
Q 005667 391 --------------------VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (684)
Q Consensus 391 --------------------v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~ 450 (684)
-..++.||||||||||+..+. .+.++|+++++||+.||++|||+.+.+
T Consensus 223 l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~---------- 290 (441)
T TIGR00390 223 LIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNT---------- 290 (441)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeee----------
Confidence 013688999999999999764 345789999999999999999998875
Q ss_pred CCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccc
Q 005667 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (684)
Q Consensus 451 ~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R 530 (684)
+...|+|+|++|||+|+|.. +++.| ++|||.+|
T Consensus 291 -k~~~v~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 323 (441)
T TIGR00390 291 -KYGMVKTDHILFIAAGAFQL-----------------------------------------AKPSD-----LIPELQGR 323 (441)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 12489999999999999853 11223 68999999
Q ss_pred cceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCC-----CCCChHHHHHHHHHHHHH
Q 005667 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILMD 605 (684)
Q Consensus 531 ~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~-----~~~GAR~Lr~iIe~~l~~ 605 (684)
|++++.|.+|+++++.+||+++.+++.+||+++|+..|+++.|+++|++.||+.++. .+.|||.|+.++|+++.+
T Consensus 324 ~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d 403 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLED 403 (441)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred HHhcCCCCcCCCccccEEEecccccCc
Q 005667 606 AMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 606 al~e~~~~~~g~~~i~~v~vde~~v~~ 632 (684)
.++++|+. .+..++||++.|..
T Consensus 404 ~~fe~p~~-----~~~~v~I~~~~V~~ 425 (441)
T TIGR00390 404 ISFEAPDL-----SGQNITIDADYVSK 425 (441)
T ss_pred HHhcCCCC-----CCCEEEECHHHHHh
Confidence 99999986 36789999988764
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=7.2e-41 Score=363.68 Aligned_cols=286 Identities=44% Similarity=0.710 Sum_probs=246.2
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT 344 (684)
..+|+++.+.|+++|+||++||+.|..++++||+|..... ....+..+.++||+||||||||
T Consensus 3 ~~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~------------------~~~~e~~~~~ILliGp~G~GKT 64 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPE------------------ELRDEVTPKNILMIGPTGVGKT 64 (443)
T ss_pred CCCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCc------------------ccccccCCceEEEECCCCCCHH
Confidence 3589999999999999999999999999999998742111 0112334589999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhc-------------------------------------
Q 005667 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS------------------------------------- 387 (684)
Q Consensus 345 ~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a------------------------------------- 387 (684)
++|+++|+.++.||+.++++.+.+++|+|.+.+..++.++..+
T Consensus 65 ~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~ 144 (443)
T PRK05201 65 EIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWG 144 (443)
T ss_pred HHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCcc
Confidence 9999999999999999999999989999988778877776655
Q ss_pred ----------------------------------c--h-----h------------------------------------
Q 005667 388 ----------------------------------D--Y-----N------------------------------------ 390 (684)
Q Consensus 388 ----------------------------------~--~-----~------------------------------------ 390 (684)
. . .
T Consensus 145 ~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~ 224 (443)
T PRK05201 145 EEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKI 224 (443)
T ss_pred ccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHH
Confidence 1 0 0
Q ss_pred -------------------hH-hhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCC
Q 005667 391 -------------------VA-AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (684)
Q Consensus 391 -------------------v~-~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~ 450 (684)
+. ..+.||||||||||+..+.++ .+.|+++++||+.||++|||+.+++
T Consensus 225 l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~---------- 292 (443)
T PRK05201 225 LIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST---------- 292 (443)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee----------
Confidence 12 248899999999999987432 4789999999999999999998875
Q ss_pred CCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccc
Q 005667 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (684)
Q Consensus 451 ~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R 530 (684)
+...|+|+|++|||+|+|.. .++.| ++|||++|
T Consensus 293 -k~~~i~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 325 (443)
T PRK05201 293 -KYGMVKTDHILFIASGAFHV-----------------------------------------SKPSD-----LIPELQGR 325 (443)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 12489999999999999852 11223 67999999
Q ss_pred cceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCC-----CCCChHHHHHHHHHHHHH
Q 005667 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILMD 605 (684)
Q Consensus 531 ~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~-----~~~GAR~Lr~iIe~~l~~ 605 (684)
|++++.|.+|+++++.+||+++.+.+.+||+.+|+..|+++.|+++|++.||+.++. .++|||.|+.++|+++.+
T Consensus 326 ~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d 405 (443)
T PRK05201 326 FPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 405 (443)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred HHhcCCCCcCCCccccEEEecccccCc
Q 005667 606 AMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 606 al~e~~~~~~g~~~i~~v~vde~~v~~ 632 (684)
.++++|+. .+..++||++.|..
T Consensus 406 ~~Fe~p~~-----~~~~v~I~~~~V~~ 427 (443)
T PRK05201 406 ISFEAPDM-----SGETVTIDAAYVDE 427 (443)
T ss_pred HhccCCCC-----CCCEEEECHHHHHH
Confidence 99999986 36789999998764
No 7
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-37 Score=351.77 Aligned_cols=279 Identities=25% Similarity=0.398 Sum_probs=232.7
Q ss_pred CCCCCCCCCCCCCChHH----HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005667 254 GCWGGSNLGNKFPTPKE----ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~p~~~~~~~~~e----l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 329 (684)
..|+|+|+.+....+++ +++.|.+.|+||++|++.|..+|. +.++|+.++++|
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIr------------raRaGL~dp~rP----------- 520 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIR------------RARAGLGDPNRP----------- 520 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHH------------HHhcCCCCCCCC-----------
Confidence 46999999987666665 899999999999999999999995 346778888877
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccccc-----------ccccccchHHHHHHHHhhcchhhHhhc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~l~~-----------~gyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||.||+|||||.||+++|..+. ..++++|||++.+ +||+||+.++.+++..++.|+
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~Py------ 594 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPY------ 594 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCC------
Confidence 47999999999999999999999996 6899999999964 899999999999999988776
Q ss_pred CCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHH
Q 005667 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~ 475 (684)
+||+||||+|.+++ +++.||++|| +|.++|..|+ .||++|+++|||+|... +.+
T Consensus 595 -SViLlDEIEKAHpd--------------V~nilLQVlD--------dGrLTD~~Gr--~VdFrNtiIImTSN~Gs-~~i 648 (786)
T COG0542 595 -SVILLDEIEKAHPD--------------VFNLLLQVLD--------DGRLTDGQGR--TVDFRNTIIIMTSNAGS-EEI 648 (786)
T ss_pred -eEEEechhhhcCHH--------------HHHHHHHHhc--------CCeeecCCCC--EEecceeEEEEecccch-HHH
Confidence 89999999999998 9999999999 6788888887 89999999999998542 111
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHH
Q 005667 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
... .++ .....++.....+++ .+++.|+|||++|+|.+|.|.+|+.+++.+|+...++.
T Consensus 649 ~~~------~~~---------~~~~~~~~~~~~v~~------~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 649 LRD------ADG---------DDFADKEALKEAVME------ELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred Hhh------ccc---------cccchhhhHHHHHHH------HHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 111 010 000112222333333 45678999999999999999999999999999997777
Q ss_pred HHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005667 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 556 L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+.++ +..+++.+.+++++.++|++++|++.+|||+|+++|++.+.+.+.+..-
T Consensus 708 l~~~----L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL 760 (786)
T COG0542 708 LAKR----LAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEIL 760 (786)
T ss_pred HHHH----HHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHH
Confidence 7655 5568999999999999999999999999999999999999999877543
No 8
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-35 Score=308.10 Aligned_cols=286 Identities=45% Similarity=0.707 Sum_probs=243.2
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT 344 (684)
..+|+++..+||++|+||++||+.+..++.|+|+|.+-... ...++.|.|+|++||+|+|||
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~------------------lr~EV~PKNILMIGpTGVGKT 64 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEE------------------LRDEVTPKNILMIGPTGVGKT 64 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHH------------------HhhccCccceEEECCCCCcHH
Confidence 56899999999999999999999999999999997543221 123455699999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhc------------------------------c------
Q 005667 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS------------------------------D------ 388 (684)
Q Consensus 345 ~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a------------------------------~------ 388 (684)
.+||.+|+..+.||+.+.++.+++.||+|.+++.+++++.+.+ +
T Consensus 65 EIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g 144 (444)
T COG1220 65 EIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWG 144 (444)
T ss_pred HHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 9999999999999999999999999999999999999876632 0
Q ss_pred -----------------------------------------------h--------------------------------
Q 005667 389 -----------------------------------------------Y-------------------------------- 389 (684)
Q Consensus 389 -----------------------------------------------~-------------------------------- 389 (684)
+
T Consensus 145 ~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~ 224 (444)
T COG1220 145 QSENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKK 224 (444)
T ss_pred cCcccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHH
Confidence 0
Q ss_pred --------------------hhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCC
Q 005667 390 --------------------NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (684)
Q Consensus 390 --------------------~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~ 449 (684)
.-...+.||+||||||+++...+ .++.|++++++|..||.++||..+.. .
T Consensus 225 ~L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T--------K 294 (444)
T COG1220 225 LLIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST--------K 294 (444)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeec--------c
Confidence 00144679999999999988743 23449999999999999999988752 1
Q ss_pred CCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccc
Q 005667 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (684)
Q Consensus 450 ~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~ 529 (684)
.| .|.|..++||.+|+|.- .+|+| ++|||.+
T Consensus 295 yG---~VkTdHILFIasGAFh~-----------------------------------------sKPSD-----LiPELQG 325 (444)
T COG1220 295 YG---PVKTDHILFIASGAFHV-----------------------------------------AKPSD-----LIPELQG 325 (444)
T ss_pred cc---ccccceEEEEecCceec-----------------------------------------CChhh-----cChhhcC
Confidence 12 67899999999999741 11222 7899999
Q ss_pred ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCC-----CCCChHHHHHHHHHHHH
Q 005667 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILM 604 (684)
Q Consensus 530 R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~-----~~~GAR~Lr~iIe~~l~ 604 (684)
||++-|.+.+|+.+|+.+||+++.+.|.+||+.+++-.++.+.|+++|++.||+.+|. .+.|||-|..++|+++.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLe 405 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLE 405 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999883 68899999999999999
Q ss_pred HHHhcCCCCcCCCccccEEEecccccCc
Q 005667 605 DAMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 605 ~al~e~~~~~~g~~~i~~v~vde~~v~~ 632 (684)
+..+++|+.. -..+.||.+.|.+
T Consensus 406 diSFeA~d~~-----g~~v~Id~~yV~~ 428 (444)
T COG1220 406 DISFEAPDMS-----GQKVTIDAEYVEE 428 (444)
T ss_pred HhCccCCcCC-----CCeEEEcHHHHHH
Confidence 9999999874 3568888777654
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.98 E-value=1.9e-31 Score=311.78 Aligned_cols=275 Identities=21% Similarity=0.329 Sum_probs=215.4
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005667 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~p~~~~~~~~~----el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 329 (684)
..|+++|+.....+.. .+++.|.+.|+||++|++.|..+|..+ ..++..+++|
T Consensus 431 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~------------~~gl~~~~kp----------- 487 (758)
T PRK11034 431 ARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMS------------RAGLGHEHKP----------- 487 (758)
T ss_pred HHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHH------------hccccCCCCC-----------
Confidence 4699999987555443 488999999999999999999999622 1223333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-----------ccccccchHHHHHHHHhhcchhhHhhcCCE
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~-----------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
..++||+||||||||++|+++|+.++.+|+.++|+++.+ +||+|++.++.+...+... +.+|
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~-------p~sV 560 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH-------PHAV 560 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhC-------CCcE
Confidence 478999999999999999999999999999999998743 5788877666666665543 4589
Q ss_pred EEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHh
Q 005667 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 399 LfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~ 478 (684)
|||||||+++++ +++.||++||+ |.+++..++ .++++|++||+|+|.. .+...
T Consensus 561 lllDEieka~~~--------------v~~~LLq~ld~--------G~ltd~~g~--~vd~rn~iiI~TsN~g-~~~~~-- 613 (758)
T PRK11034 561 LLLDEIEKAHPD--------------VFNLLLQVMDN--------GTLTDNNGR--KADFRNVVLVMTTNAG-VRETE-- 613 (758)
T ss_pred EEeccHhhhhHH--------------HHHHHHHHHhc--------CeeecCCCc--eecCCCcEEEEeCCcC-HHHHh--
Confidence 999999999987 99999999993 333444443 7899999999999853 33322
Q ss_pred ccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHH
Q 005667 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (684)
Q Consensus 479 r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~k 558 (684)
+..+||..... ....+ +.++..|.|||++|||.+|.|++|+.+++.+|+...+..+
T Consensus 614 ---~~~~g~~~~~~-------------~~~~~------~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~-- 669 (758)
T PRK11034 614 ---RKSIGLIHQDN-------------STDAM------EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL-- 669 (758)
T ss_pred ---hcccCcccchh-------------hHHHH------HHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHH--
Confidence 23567642211 01111 2345679999999999999999999999999998765555
Q ss_pred HHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005667 559 QYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 559 qy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
.+.++.+++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+++..
T Consensus 670 --~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 670 --QAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred --HHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 444677899999999999999999999999999999999999999988653
No 10
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=4.3e-30 Score=305.11 Aligned_cols=288 Identities=25% Similarity=0.360 Sum_probs=221.0
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005667 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~p~~~~~~~~~----el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 329 (684)
..|+|+|+.....+.. .+++.|.+.|+||++|++.|..++... +.+...+++|
T Consensus 482 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~------------~~gl~~~~~p----------- 538 (821)
T CHL00095 482 SAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA------------RVGLKNPNRP----------- 538 (821)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH------------hhcccCCCCC-----------
Confidence 4699999987665543 499999999999999999999998632 2233333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc-----------cccccccchHHHHHHHHhhcchhhHhhc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~-----------~~gyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||+||||||||++|+++|+.+ ..++++++++++. ++||+|++....+...+...+
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p------- 611 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKP------- 611 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCC-------
Confidence 3678999999999999999999998 3579999998873 367999887777777666544
Q ss_pred CCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHH
Q 005667 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~ 475 (684)
.+||+|||||++++. +++.||++|| +|.+++..++ .++++|++||||+|... +.
T Consensus 612 ~~VvllDeieka~~~--------------v~~~Llq~le--------~g~~~d~~g~--~v~~~~~i~I~Tsn~g~--~~ 665 (821)
T CHL00095 612 YTVVLFDEIEKAHPD--------------IFNLLLQILD--------DGRLTDSKGR--TIDFKNTLIIMTSNLGS--KV 665 (821)
T ss_pred CeEEEECChhhCCHH--------------HHHHHHHHhc--------cCceecCCCc--EEecCceEEEEeCCcch--HH
Confidence 379999999999988 9999999999 3444555554 78999999999999753 22
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHH
Q 005667 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
+. .....+||....... ....+.. +.+.+. +.++..|+|||++|+|.+|.|.||+.+++.+|+...++.
T Consensus 666 i~--~~~~~~gf~~~~~~~---~~~~~~~----~~~~~~--~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 666 IE--TNSGGLGFELSENQL---SEKQYKR----LSNLVN--EELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HH--hhccccCCccccccc---ccccHHH----HHHHHH--HHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 22 122457876532210 0001122 222221 234556999999999999999999999999999987777
Q ss_pred HHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005667 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 556 L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+.++ +..+++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+++..-
T Consensus 735 l~~r----l~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l 787 (821)
T CHL00095 735 LFKR----LNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVL 787 (821)
T ss_pred HHHH----HHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 6555 4567999999999999999999999999999999999999998876543
No 11
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=5e-30 Score=301.28 Aligned_cols=275 Identities=23% Similarity=0.360 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCCC----ChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005667 254 GCWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~p~~~~~~----~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 329 (684)
..|+++|+..... ...++++.|.+.|+||++|++.|..++... ..+..++.+|
T Consensus 427 ~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~------------~~g~~~~~~p----------- 483 (731)
T TIGR02639 427 AKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS------------RAGLGNPNKP----------- 483 (731)
T ss_pred HHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHH------------hcCCCCCCCC-----------
Confidence 3489999866433 344599999999999999999999888511 2233333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-----------ccccccchHHHHHHHHhhcchhhHhhcCCE
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~-----------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
..++||+||||||||++|+++|+.++.+++.++++++.+ +||+|++.++.+...+... +.+|
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~-------p~~V 556 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKH-------PHCV 556 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhC-------CCeE
Confidence 367999999999999999999999999999999998743 6788988777777766554 4489
Q ss_pred EEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHh
Q 005667 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 399 LfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~ 478 (684)
|+|||||+++++ +++.||++||+ |.+++..++ .+|++|++||+|+|... +. +
T Consensus 557 vllDEieka~~~--------------~~~~Ll~~ld~--------g~~~d~~g~--~vd~~~~iii~Tsn~g~-~~-~-- 608 (731)
T TIGR02639 557 LLLDEIEKAHPD--------------IYNILLQVMDY--------ATLTDNNGR--KADFRNVILIMTSNAGA-SE-M-- 608 (731)
T ss_pred EEEechhhcCHH--------------HHHHHHHhhcc--------CeeecCCCc--ccCCCCCEEEECCCcch-hh-h--
Confidence 999999999988 99999999993 334444443 78999999999998642 11 1
Q ss_pred ccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHH
Q 005667 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (684)
Q Consensus 479 r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~k 558 (684)
.+..+||.... ..... .+.++..|.|||++|||.+|.|.||+.+++.+|+...++.+.+
T Consensus 609 --~~~~~~f~~~~-------------~~~~~------~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~ 667 (731)
T TIGR02639 609 --SKPPIGFGSEN-------------VESKS------DKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSK 667 (731)
T ss_pred --hhccCCcchhh-------------hHHHH------HHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 12235653211 00111 2345567999999999999999999999999999987666644
Q ss_pred HHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005667 559 QYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 559 qy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+ +...++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+.+..
T Consensus 668 ~----l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 668 Q----LNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred H----HHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 4 556788999999999999999999999999999999999999987643
No 12
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=1.4e-28 Score=292.04 Aligned_cols=279 Identities=20% Similarity=0.351 Sum_probs=212.8
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005667 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~p~~~~~~~~~----el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 329 (684)
..|+|+|+.+...+.. .+++.|.+.|+||+.|++.|..++... +++...+.+|
T Consensus 539 ~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~------------~~gl~~~~~p----------- 595 (852)
T TIGR03345 539 ADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA------------RAGLEDPRKP----------- 595 (852)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH------------hcCCCCCCCC-----------
Confidence 3699999987655444 499999999999999999999998621 2233333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc-----------cccccccchHHHHHHHHhhcchhhHhhc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~-----------~~gyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||+||||||||++|+++|+.+ ...++.+||+++. ++||+|++.++.+...+... +
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~-------p 668 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRK-------P 668 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhC-------C
Confidence 3578999999999999999999999 3578999998874 26899998777777666654 4
Q ss_pred CCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHH
Q 005667 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~ 475 (684)
.+||+||||+++++. +++.|+++|+ +|.+++..++ .++++|.+||+|+|... +.+
T Consensus 669 ~svvllDEieka~~~--------------v~~~Llq~ld--------~g~l~d~~Gr--~vd~~n~iiI~TSNlg~-~~~ 723 (852)
T TIGR03345 669 YSVVLLDEVEKAHPD--------------VLELFYQVFD--------KGVMEDGEGR--EIDFKNTVILLTSNAGS-DLI 723 (852)
T ss_pred CcEEEEechhhcCHH--------------HHHHHHHHhh--------cceeecCCCc--EEeccccEEEEeCCCch-HHH
Confidence 589999999999887 9999999999 4445566665 79999999999998642 222
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHH
Q 005667 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
.... .++.. ..+.+.....++ +.++..|.|||++|++ +|.|.+|+.+++.+|+...++.
T Consensus 724 ~~~~-----~~~~~---------~~~~~~~~~~~~------~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 724 MALC-----ADPET---------APDPEALLEALR------PELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred HHhc-----cCccc---------CcchHHHHHHHH------HHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 1110 01000 001111122222 2345579999999998 8999999999999999998887
Q ss_pred HHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005667 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 556 L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.+++.. ..++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+.+..
T Consensus 783 l~~rl~~---~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 783 IARRLKE---NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHH---hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 7666433 2378999999999999999999999999999999999999887643
No 13
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=1.8e-27 Score=283.57 Aligned_cols=275 Identities=24% Similarity=0.378 Sum_probs=209.5
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005667 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~p~~~~~~~~~----el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 329 (684)
..|+|+|+........ .+++.|.+.|+||+.|++.|..++. +. ++++.++++|
T Consensus 538 ~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~----~~--------~~gl~~~~~p----------- 594 (852)
T TIGR03346 538 SRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIR----RS--------RAGLSDPNRP----------- 594 (852)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHH----HH--------hccCCCCCCC-----------
Confidence 4699999987555443 3888999999999999999999986 21 2233333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc-----------cccccccchHHHHHHHHhhcchhhHhhc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~-----------~~gyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||+||||||||++|++||+.+ ..+++.++|+++. ++||+|++.+..+...+...+
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p------- 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKP------- 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCC-------
Confidence 4689999999999999999999988 4689999998763 257888876666666655543
Q ss_pred CCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHH
Q 005667 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~ 475 (684)
.+||+||||+++++. +++.||++|+ +|.+++..+ ..++++|++||+|+|... +.+
T Consensus 668 ~~vlllDeieka~~~--------------v~~~Ll~~l~--------~g~l~d~~g--~~vd~rn~iiI~TSn~g~-~~~ 722 (852)
T TIGR03346 668 YSVVLFDEVEKAHPD--------------VFNVLLQVLD--------DGRLTDGQG--RTVDFRNTVIIMTSNLGS-QFI 722 (852)
T ss_pred CcEEEEeccccCCHH--------------HHHHHHHHHh--------cCceecCCC--eEEecCCcEEEEeCCcch-HhH
Confidence 479999999999988 9999999998 344445444 488999999999998532 111
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHH
Q 005667 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
.... + ..+++.....++ +.++..|+|||++|||.++.|.||+.+++.+|+...+..
T Consensus 723 ~~~~------~------------~~~~~~~~~~~~------~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 723 QELA------G------------GDDYEEMREAVM------EVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred hhhc------c------------cccHHHHHHHHH------HHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 1100 0 001111111222 234567999999999999999999999999999987766
Q ss_pred HHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005667 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 556 L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.++ +...++.+.++++++++|++++|+..+|||+|+++|++.+.+.+.+..
T Consensus 779 l~~~----l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 779 LRKR----LAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HHHH----HHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 6554 445677899999999999999999999999999999999999887643
No 14
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=2.3e-27 Score=282.22 Aligned_cols=275 Identities=25% Similarity=0.420 Sum_probs=208.4
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005667 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~p~~~~~~~~~----el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 329 (684)
..|||+|+.+...+.. .+++.|.+.|+||+.|++.|..++. +. .++..++++|
T Consensus 541 ~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~----~~--------~~gl~~~~~p----------- 597 (857)
T PRK10865 541 ARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIR----RS--------RAGLSDPNRP----------- 597 (857)
T ss_pred HHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHH----HH--------HhcccCCCCC-----------
Confidence 4699999988666543 4899999999999999999999986 21 2233333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc-----------ccccccchHHHHHHHHhhcchhhHhhc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~-----------~gyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||+||||||||++|++||+.+ +.+++.++|+++.+ ++|+|++.++.+....... +
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~-------p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRR-------P 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhC-------C
Confidence 3589999999999999999999987 45799999987742 5677877556666555443 3
Q ss_pred CCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHH
Q 005667 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~ 475 (684)
.+||+||||+++++. +++.|+++|+ +|.+++..+ ..++++|.+||+|+|... + .
T Consensus 671 ~~vLllDEieka~~~--------------v~~~Ll~ile--------~g~l~d~~g--r~vd~rn~iiI~TSN~g~-~-~ 724 (857)
T PRK10865 671 YSVILLDEVEKAHPD--------------VFNILLQVLD--------DGRLTDGQG--RTVDFRNTVVIMTSNLGS-D-L 724 (857)
T ss_pred CCeEEEeehhhCCHH--------------HHHHHHHHHh--------hCceecCCc--eEEeecccEEEEeCCcch-H-H
Confidence 489999999999988 9999999998 333344444 478999999999998642 1 1
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHH
Q 005667 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
+..+ +|. ..++.....++ +.++..|.|+|++|+|.++.|.|++.+++.+|++..+..
T Consensus 725 ~~~~-----~~~------------~~~~~~~~~~~------~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 725 IQER-----FGE------------LDYAHMKELVL------GVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HHHh-----ccc------------cchHHHHHHHH------HHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 1111 110 01111112222 234567999999999999999999999999999987776
Q ss_pred HHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005667 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 556 L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.+++ +..++.+.++++++++|++++|+..+|||+|+++|++.+.+.+++..
T Consensus 782 l~~rl----~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 782 LYKRL----EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred HHHHH----HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 65543 44577889999999999999999999999999999999999887643
No 15
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.2e-25 Score=257.00 Aligned_cols=287 Identities=23% Similarity=0.333 Sum_probs=219.6
Q ss_pred CCCCCCCCCCCCCC----ChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCccccc
Q 005667 253 DGCWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVEL 328 (684)
Q Consensus 253 ~~~~~g~p~~~~~~----~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (684)
...|+++|+..... ....|++.|.+.|+||++|+.+|..+|... +.|..++ .
T Consensus 534 ~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s------------r~gl~~~------------~ 589 (898)
T KOG1051|consen 534 VSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS------------RAGLKDP------------N 589 (898)
T ss_pred hhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh------------hcccCCC------------C
Confidence 46799999987654 444599999999999999999999999611 1222222 2
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccc--------ccccccccchHHHHHHHHhhcchhhHhhcCC
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL--------TQAGYVGEDVESILYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~l--------~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~g 397 (684)
|...+||.||+|+|||.||+++|..+. ..|+.+|++++ .++||+|+..++.+++.+.+.++ +
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~-------s 662 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPY-------S 662 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCc-------e
Confidence 347899999999999999999999993 46999999974 34889999989999998888765 7
Q ss_pred EEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHH
Q 005667 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (684)
Q Consensus 398 VLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~ 477 (684)
||+|||||+.++. +++.|+++|| .|.++|..|+ .|+++|+|||||+|... ..+.
T Consensus 663 VVLfdeIEkAh~~--------------v~n~llq~lD--------~GrltDs~Gr--~Vd~kN~I~IMTsn~~~--~~i~ 716 (898)
T KOG1051|consen 663 VVLFEEIEKAHPD--------------VLNILLQLLD--------RGRLTDSHGR--EVDFKNAIFIMTSNVGS--SAIA 716 (898)
T ss_pred EEEEechhhcCHH--------------HHHHHHHHHh--------cCccccCCCc--EeeccceEEEEecccch--Hhhh
Confidence 9999999999988 9999999999 5677788887 89999999999988532 1111
Q ss_pred hccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHH----cCCCcccccccceEEEcCCCCHHHHHHHHhchH
Q 005667 478 ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIA----YGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 478 ~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~----~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l 553 (684)
.... ..++-..... ....+.. .+....+..+ ..|+|||++|++.++.|.+++.+++.+|+...+
T Consensus 717 ~~~~--~~~~l~~~~~----~~~~~~~------~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 717 NDAS--LEEKLLDMDE----KRGSYRL------KKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred cccc--cccccccchh----hhhhhhh------hhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHH
Confidence 1110 1111111100 0000111 1112234455 779999999999999999999999999999877
Q ss_pred HHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005667 554 NALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 554 ~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
.++.+++. ..++...+++.+...+..++|+..+|||.|++.|++.+.+.+.....
T Consensus 785 ~e~~~r~~----~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l 839 (898)
T KOG1051|consen 785 TEIEKRLE----ERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL 839 (898)
T ss_pred HHHHHHhh----hhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe
Confidence 66655543 34567889999999999999999999999999999999999876543
No 16
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.93 E-value=2.4e-25 Score=246.04 Aligned_cols=277 Identities=18% Similarity=0.291 Sum_probs=206.0
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.|+|.+.+...+.+.+. ++ + ....+||+.|++||||..+|++|.+..
T Consensus 246 ~Iig~S~~m~~~~~~ak----r~----------A----------------~tdstVLi~GESGTGKElfA~~IH~~S~R~ 295 (560)
T COG3829 246 DIIGESPAMLRVLELAK----RI----------A----------------KTDSTVLILGESGTGKELFARAIHNLSPRA 295 (560)
T ss_pred hhccCCHHHHHHHHHHH----hh----------c----------------CCCCcEEEecCCCccHHHHHHHHHhcCccc
Confidence 37999999888877764 11 1 113799999999999999999997766
Q ss_pred CCCEEEEeccccc----cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 355 NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~----~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+. ++.++|+..++.....-..+++.++.|++|+||||||..|+.. +|.+||
T Consensus 296 ~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKLL 361 (560)
T COG3829 296 NGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKLL 361 (560)
T ss_pred CCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHHH
Confidence 6899999999775 4789999855554444444788899999999999999999998 999999
Q ss_pred HHHhCcee-eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHH
Q 005667 431 KMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 431 ~~LEg~~v-~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~l 509 (684)
++|+++.+ +| |+ ...+.+|.+ +| +++..+|+++|.+++||.+++|+.++...
T Consensus 362 RVLQEkei~rv---G~-----t~~~~vDVR---II-AATN~nL~~~i~~G~FReDLYYRLNV~~i--------------- 414 (560)
T COG3829 362 RVLQEKEIERV---GG-----TKPIPVDVR---II-AATNRNLEKMIAEGTFREDLYYRLNVIPI--------------- 414 (560)
T ss_pred HHHhhceEEec---CC-----CCceeeEEE---EE-eccCcCHHHHHhcCcchhhheeeeceeee---------------
Confidence 99985444 33 32 233455533 34 44556899999999999999999888765
Q ss_pred hhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCccee-cCHHHHHHHHHhcCCC
Q 005667 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH-FTENALRLIAKKAISK 588 (684)
Q Consensus 510 l~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~-i~eeAl~~La~~ay~~ 588 (684)
..|+|+.| .+|+..++..+++.+.+.|.+ .+. ++++++..|.+ |+|
T Consensus 415 -------------~iPPLReR-----------~eDI~~L~~~Fl~k~s~~~~~-------~v~~ls~~a~~~L~~--y~W 461 (560)
T COG3829 415 -------------TIPPLRER-----------KEDIPLLAEYFLDKFSRRYGR-------NVKGLSPDALALLLR--YDW 461 (560)
T ss_pred -------------cCCCcccC-----------cchHHHHHHHHHHHHHHHcCC-------CcccCCHHHHHHHHh--CCC
Confidence 45888888 577788887766655555433 444 99999999999 899
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCccc-CC----CcceEEcCCChHHHHHHHHhhhhhhhc
Q 005667 589 NTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RG----CGAKILYGKGALDRYLAQHKRKDLETN 663 (684)
Q Consensus 589 ~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~-~g----~~~~i~~~~g~l~~~l~~~~~~~~~~~ 663 (684)
++|+|+|+|+||+++.- . +. .-+|+.+++.... +. .........+.++.+++++|+..|.+.
T Consensus 462 PGNVRELeNviER~v~~--~---~~--------~~~I~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~~~e~~Ek~~I~~a 528 (560)
T COG3829 462 PGNVRELENVIERAVNL--V---ES--------DGLIDADDLPAFALEEKEPRPETTKQIEVGSLKEALEEYEKHLIREA 528 (560)
T ss_pred CchHHHHHHHHHHHHhc--c---CC--------cceeehhhcchhhhcccccCcCcccCcccccHHHHHHHHHHHHHHHH
Confidence 99999999999998751 1 11 1125555544111 11 111122457789999999999999999
Q ss_pred cccCCCCC
Q 005667 664 VAGADGEP 671 (684)
Q Consensus 664 ~~~~~~~~ 671 (684)
+++.+++.
T Consensus 529 L~~~~gn~ 536 (560)
T COG3829 529 LERHGGNK 536 (560)
T ss_pred HHHhCCCH
Confidence 99888765
No 17
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-23 Score=236.92 Aligned_cols=254 Identities=22% Similarity=0.299 Sum_probs=205.1
Q ss_pred CCCCCCC---CCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceE
Q 005667 257 GGSNLGN---KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (684)
Q Consensus 257 ~g~p~~~---~~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 333 (684)
...|+.+ ...+.++.++.||+..+|.+++|+.+.+.+.-... .. .....-+
T Consensus 300 l~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l-----~~---------------------~~kGpIL 353 (782)
T COG0466 300 LDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKL-----TK---------------------KLKGPIL 353 (782)
T ss_pred HhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHH-----hc---------------------cCCCcEE
Confidence 3444433 45567779999999999999999999998752111 10 0112578
Q ss_pred EEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc--------ccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccc
Q 005667 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 334 LL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~--------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEID 405 (684)
||+||||+|||.|++.||+.++.+|++++...+.+ ..|+|.-.+..++.+.... ..+.|++|||||
T Consensus 354 cLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~------~~NPv~LLDEID 427 (782)
T COG0466 354 CLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG------VKNPVFLLDEID 427 (782)
T ss_pred EEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhC------CcCCeEEeechh
Confidence 89999999999999999999999999999887753 4599999888888876654 356899999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCC
Q 005667 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~I 485 (684)
++..+ ..+| -.++||++|| |+++..+.+.+-.+.+|.++++||+|+|..+
T Consensus 428 Km~ss-----~rGD-----PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~-------------- 477 (782)
T COG0466 428 KMGSS-----FRGD-----PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLD-------------- 477 (782)
T ss_pred hccCC-----CCCC-----hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccc--------------
Confidence 99775 2334 7889999999 8888888888888899999999999998532
Q ss_pred CcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHh
Q 005667 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 Gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~ 565 (684)
.++.+|++|+. +|.+..|+++|..+|++++ |..+..+...
T Consensus 478 ------------------------------------tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~---LiPk~~~~~g 517 (782)
T COG0466 478 ------------------------------------TIPAPLLDRME-VIRLSGYTEDEKLEIAKRH---LIPKQLKEHG 517 (782)
T ss_pred ------------------------------------cCChHHhccee-eeeecCCChHHHHHHHHHh---cchHHHHHcC
Confidence 25678888987 8999999999999999985 4444333344
Q ss_pred hCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005667 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
.....+.|+++|+..|+++ |..+.|+|+|++.|..+++.+..++...
T Consensus 518 L~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~~~ 564 (782)
T COG0466 518 LKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKILLK 564 (782)
T ss_pred CCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 4555799999999999998 9999999999999999999998887654
No 18
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-23 Score=236.77 Aligned_cols=247 Identities=24% Similarity=0.352 Sum_probs=204.2
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005667 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGK 343 (684)
+..+....++.||+..+|.+++|+.+.+.+.-...| +. ....-++|+||||+||
T Consensus 398 En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr--------------gs------------~qGkIlCf~GPPGVGK 451 (906)
T KOG2004|consen 398 ENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR--------------GS------------VQGKILCFVGPPGVGK 451 (906)
T ss_pred hhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc--------------cc------------CCCcEEEEeCCCCCCc
Confidence 345666789999999999999999999988522111 11 1126888999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccccc--------ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccc
Q 005667 344 TLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 344 T~LAraIA~~l~~pfv~v~~s~l~~--------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~ 415 (684)
|.+|+.||+.++..|++++...+.. ..|+|...+++++.+.... ..+.+++|||||++...
T Consensus 452 TSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~------t~NPliLiDEvDKlG~g----- 520 (906)
T KOG2004|consen 452 TSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVK------TENPLILIDEVDKLGSG----- 520 (906)
T ss_pred ccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhC------CCCceEEeehhhhhCCC-----
Confidence 9999999999999999999876643 4599999898888876654 35689999999999742
Q ss_pred cCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccccc
Q 005667 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~ 495 (684)
.++| --++||++|| |+++..+.+.+-.+.+|.+.++||||+|..+
T Consensus 521 ~qGD-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~id------------------------ 565 (906)
T KOG2004|consen 521 HQGD-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVID------------------------ 565 (906)
T ss_pred CCCC-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccc------------------------
Confidence 3345 7889999999 8889889888888999999999999998432
Q ss_pred ccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH
Q 005667 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e 575 (684)
.++|+|++|+. +|.+..|..+|..+|+.++ |+.+..+........+.+++
T Consensus 566 --------------------------tIP~pLlDRME-vIelsGYv~eEKv~IA~~y---Lip~a~~~~gl~~e~v~is~ 615 (906)
T KOG2004|consen 566 --------------------------TIPPPLLDRME-VIELSGYVAEEKVKIAERY---LIPQALKDCGLKPEQVKISD 615 (906)
T ss_pred --------------------------cCChhhhhhhh-eeeccCccHHHHHHHHHHh---hhhHHHHHcCCCHHhcCccH
Confidence 26789999998 8999999999999999985 55665555555566788999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005667 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 576 eAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+|+..|+++ |+.+.|+|+|++-|+.++..+...+.+.
T Consensus 616 ~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~vv~~ 652 (906)
T KOG2004|consen 616 DALLALIER-YCREAGVRNLQKQIEKICRKVALKVVEG 652 (906)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 9999999999999999999988776543
No 19
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.91 E-value=4e-24 Score=233.72 Aligned_cols=283 Identities=18% Similarity=0.279 Sum_probs=208.0
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.|||++.|.+.+.+.|. . |.....+|||.|++||||..+||+|.+..
T Consensus 224 ~iIG~S~am~~ll~~i~----~--------------------------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~ 273 (550)
T COG3604 224 GIIGRSPAMRQLLKEIE----V--------------------------VAKSDSTVLIRGETGTGKELVARAIHQLSPRR 273 (550)
T ss_pred cceecCHHHHHHHHHHH----H--------------------------HhcCCCeEEEecCCCccHHHHHHHHHhhCccc
Confidence 47999999999988885 1 12223899999999999999999998877
Q ss_pred CCCEEEEeccccc----cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 355 NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~----~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
..|||.+||+.+. ++..+|+. .+.++..+....+.++.+.+|+||||||..|+.. +|.+||
T Consensus 274 ~kPfV~~NCAAlPesLlESELFGHe-KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLL 338 (550)
T COG3604 274 DKPFVKLNCAALPESLLESELFGHE-KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLL 338 (550)
T ss_pred CCCceeeeccccchHHHHHHHhccc-ccccccchhccCcceeecCCCeEechhhccCCHH--------------HHHHHH
Confidence 5799999999775 47899998 5666777777788899999999999999999998 999999
Q ss_pred HHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
+++..+.+. +.+..+.+.||.+- | ++++.||++++++++|+.+++|+.++...
T Consensus 339 RvLQegEie-------RvG~~r~ikVDVRi---I-AATNRDL~~~V~~G~FRaDLYyRLsV~Pl---------------- 391 (550)
T COG3604 339 RVLQEGEIE-------RVGGDRTIKVDVRV---I-AATNRDLEEMVRDGEFRADLYYRLSVFPL---------------- 391 (550)
T ss_pred HHHhhccee-------ecCCCceeEEEEEE---E-eccchhHHHHHHcCcchhhhhhccccccc----------------
Confidence 999743332 23455667777543 3 55557999999999999999988887654
Q ss_pred hhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCc-ceecCHHHHHHHHHhcCCCC
Q 005667 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV-KLHFTENALRLIAKKAISKN 589 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi-~l~i~eeAl~~La~~ay~~~ 589 (684)
+.|+|+.| .+|+.-++..++.++.++ .|. .+.++++|++.|.+ |.|+
T Consensus 392 ------------~lPPLRER-----------~~DIplLA~~Fle~~~~~-------~gr~~l~ls~~Al~~L~~--y~wP 439 (550)
T COG3604 392 ------------ELPPLRER-----------PEDIPLLAGYFLEKFRRR-------LGRAILSLSAEALELLSS--YEWP 439 (550)
T ss_pred ------------CCCCcccC-----------CccHHHHHHHHHHHHHHh-------cCCcccccCHHHHHHHHc--CCCC
Confidence 45777777 456666666554444333 344 78899999999999 8999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccC--------cccCCC-cceEEcCCChHHHHHHHHhhhhh
Q 005667 590 TGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVG--------SEDRGC-GAKILYGKGALDRYLAQHKRKDL 660 (684)
Q Consensus 590 ~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~--------~~~~g~-~~~i~~~~g~l~~~l~~~~~~~~ 660 (684)
+|+|+|+++|++.+..+ ....... ++ ...+.... ...+.. -.......-.+-....+.+++.|
T Consensus 440 GNVRELen~veRavlla-~~~~~~~----d~---~~l~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~l~~~~~~~eR~~I 511 (550)
T COG3604 440 GNVRELENVVERAVLLA-GRLTRRG----DL---CTLELSLSALLWKTLPAPEPSALPEPALPGEHTLREATEEFERQLI 511 (550)
T ss_pred CcHHHHHHHHHHHHHHh-cccCCCc----ce---eehhhhhhccccccCCCCCccccCCccCCCcccchhhhHHHHHHHH
Confidence 99999999999999877 5544432 11 11112211 100000 00111112356788889999999
Q ss_pred hhccccCCCCCC
Q 005667 661 ETNVAGADGEPE 672 (684)
Q Consensus 661 ~~~~~~~~~~~~ 672 (684)
...+++++|+..
T Consensus 512 ~~aL~~~~~~~a 523 (550)
T COG3604 512 IAALEETNGNWA 523 (550)
T ss_pred HHHHHHhCCcHH
Confidence 999998888753
No 20
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.90 E-value=9.7e-23 Score=214.97 Aligned_cols=238 Identities=19% Similarity=0.251 Sum_probs=170.7
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhH-HhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHY-MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~-~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGK 343 (684)
....+++.++|++.++|++.+|++|.+.+.... .+.+ ...|... ..+..++||+|||||||
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r------~~~g~~~------------~~~~~~vll~G~pGTGK 71 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLR------QRLGLAS------------AAPTLHMSFTGNPGTGK 71 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH------HHhCCCc------------CCCCceEEEEcCCCCCH
Confidence 456778999999888999999999988775311 1111 1122211 11236999999999999
Q ss_pred HHHHHHHHHHhC-------CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccccc
Q 005667 344 TLLAKTLARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 344 T~LAraIA~~l~-------~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~ 416 (684)
|++|+++|+.+. .+|+.+++.++. ..|+|+. ...+..++.. +.+||||||||+.+...+..
T Consensus 72 T~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~-~~~~g~~-~~~~~~~~~~-------a~~gvL~iDEi~~L~~~~~~--- 139 (284)
T TIGR02880 72 TTVALRMAQILHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEILKR-------AMGGVLFIDEAYYLYRPDNE--- 139 (284)
T ss_pred HHHHHHHHHHHHHcCCcccceEEEecHHHHh-Hhhcccc-hHHHHHHHHH-------ccCcEEEEechhhhccCCCc---
Confidence 999999998873 379999998877 4688876 3445555554 45699999999998643211
Q ss_pred CCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccc
Q 005667 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~ 496 (684)
...+..+++.|++.|+.. ..++++|++++...++.+.
T Consensus 140 --~~~~~~~~~~Ll~~le~~---------------------~~~~~vI~a~~~~~~~~~~-------------------- 176 (284)
T TIGR02880 140 --RDYGQEAIEILLQVMENQ---------------------RDDLVVILAGYKDRMDSFF-------------------- 176 (284)
T ss_pred --cchHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH--------------------
Confidence 122345899999999821 1346777777632222111
Q ss_pred cCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHH
Q 005667 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ee 576 (684)
.+.|+|.+||+..|.|++|+.+|+.+|+...+... ...++++
T Consensus 177 -------------------------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~-------------~~~l~~~ 218 (284)
T TIGR02880 177 -------------------------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ-------------QYRFSAE 218 (284)
T ss_pred -------------------------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh-------------ccccCHH
Confidence 24699999999999999999999999998754332 3457888
Q ss_pred HHHHHHHh-----cCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005667 577 ALRLIAKK-----AISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 577 Al~~La~~-----ay~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+++.+.++ ..+|.+|+|+|++++++++......+...
T Consensus 219 a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 219 AEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888774 12789999999999999999887766543
No 21
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.90 E-value=1.5e-23 Score=231.60 Aligned_cols=287 Identities=16% Similarity=0.264 Sum_probs=198.4
Q ss_pred cccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-
Q 005667 276 DKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (684)
Q Consensus 276 d~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l- 354 (684)
...++|++.++++|...+. ++ + ....+||++|++||||..+||+|.+..
T Consensus 140 ~~~liG~S~am~~l~~~i~----kv----------A----------------~s~a~VLI~GESGtGKElvAr~IH~~S~ 189 (464)
T COG2204 140 GGELVGESPAMQQLRRLIA----KV----------A----------------PSDASVLITGESGTGKELVARAIHQASP 189 (464)
T ss_pred cCCceecCHHHHHHHHHHH----HH----------h----------------CCCCCEEEECCCCCcHHHHHHHHHhhCc
Confidence 4458999999999988885 21 1 113799999999999999999997776
Q ss_pred --CCCEEEEeccccc----cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHH
Q 005667 355 --NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 355 --~~pfv~v~~s~l~----~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~ 428 (684)
+.||+.+||..+. ++.++|+. .+.++.......+.++.+.+|+||||||..|+.+ +|..
T Consensus 190 R~~~PFVavNcaAip~~l~ESELFGhe-kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~k 254 (464)
T COG2204 190 RAKGPFIAVNCAAIPENLLESELFGHE-KGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQVK 254 (464)
T ss_pred ccCCCceeeecccCCHHHHHHHhhccc-ccCcCCcccccCcceeEcCCceEEeeccccCCHH--------------HHHH
Confidence 5699999999875 36688887 4444555555667888999999999999999998 9999
Q ss_pred HHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhH
Q 005667 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ 508 (684)
||++++.+.+. +.+..+.+.+| +-+|+ ++..+|++.+.+++|+.+++|+.++...
T Consensus 255 LLRvLqe~~~~-------rvG~~~~i~vd---vRiIa-aT~~dL~~~v~~G~FReDLyyRLnV~~i-------------- 309 (464)
T COG2204 255 LLRVLQEREFE-------RVGGNKPIKVD---VRIIA-ATNRDLEEEVAAGRFREDLYYRLNVVPL-------------- 309 (464)
T ss_pred HHHHHHcCeeE-------ecCCCccccee---eEEEe-ecCcCHHHHHHcCCcHHHHHhhhcccee--------------
Confidence 99999843332 12223334454 34444 4456899999999888888888777543
Q ss_pred HhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCC
Q 005667 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISK 588 (684)
Q Consensus 509 ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~ 588 (684)
..|+|+.| .||+.-++.+++.+..+++. .....+++++++.|.. |+|
T Consensus 310 --------------~iPpLRER-----------~EDIp~L~~hfl~~~~~~~~------~~~~~~s~~a~~~L~~--y~W 356 (464)
T COG2204 310 --------------RLPPLRER-----------KEDIPLLAEHFLKRFAAELG------RPPKGFSPEALAALLA--YDW 356 (464)
T ss_pred --------------cCCccccc-----------chhHHHHHHHHHHHHHHHcC------CCCCCCCHHHHHHHHh--CCC
Confidence 34666666 57888888876555544432 1256799999999999 899
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcccCCCcceEEcCCChHHHHHHHHhhhhhhhccccCC
Q 005667 589 NTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKDLETNVAGAD 668 (684)
Q Consensus 589 ~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~~g~~~~i~~~~g~l~~~l~~~~~~~~~~~~~~~~ 668 (684)
++|+|+|+|++++.+.-.-.+..+.. .+.............. ......... ..+...+.++|++.|...+..++
T Consensus 357 PGNVREL~N~ver~~il~~~~~i~~~----~l~~~~~~~~~~~~~~-~~~~~~~~~-~~l~~~~~~~Er~~I~~aL~~~~ 430 (464)
T COG2204 357 PGNVRELENVVERAVILSEGPEIEVE----DLPLEILAPAAEALAG-PAGEAALPG-LPLGEALAEVERQLILQALERTG 430 (464)
T ss_pred ChHHHHHHHHHHHHHhcCCccccchh----hccccccccccccccc-ccccccccc-ccHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999998864422211111 0110000000000000 000000001 45889999999999999998888
Q ss_pred CCC
Q 005667 669 GEP 671 (684)
Q Consensus 669 ~~~ 671 (684)
|+.
T Consensus 431 g~~ 433 (464)
T COG2204 431 GNK 433 (464)
T ss_pred CCH
Confidence 875
No 22
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=2.3e-22 Score=212.53 Aligned_cols=239 Identities=20% Similarity=0.257 Sum_probs=165.7
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT 344 (684)
....+++.+.|++.++|++.+|++|.+.+..... ... +...|...+. +..++||+||||||||
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~---~~~--~~~~g~~~~~------------~~~~ill~G~pGtGKT 73 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLI---DRL--RKNLGLTSSN------------PGLHMSFTGSPGTGKT 73 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH---HHH--HHHcCCCCCC------------CCceEEEECCCCCCHH
Confidence 3456679999998899999999999988752111 011 1122222211 2368999999999999
Q ss_pred HHHHHHHHHhC-------CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccC
Q 005667 345 LLAKTLARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 345 ~LAraIA~~l~-------~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~ 417 (684)
++|+++|+.+. .+++.++++++. ..|+|+. ...+..++.. +.++||||||+|.+...++
T Consensus 74 ~lAr~la~~~~~~g~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~l~~-------a~ggVLfIDE~~~l~~~~~----- 139 (287)
T CHL00181 74 TVALKMADILYKLGYIKKGHLLTVTRDDLV-GQYIGHT-APKTKEVLKK-------AMGGVLFIDEAYYLYKPDN----- 139 (287)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEecHHHHH-HHHhccc-hHHHHHHHHH-------ccCCEEEEEccchhccCCC-----
Confidence 99999998862 368899988876 4578876 3344555554 3568999999999865321
Q ss_pred CCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccccccc
Q 005667 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~ 497 (684)
.+..+.++++.|++.||. ...++++|++|+...++.+.
T Consensus 140 ~~~~~~e~~~~L~~~me~---------------------~~~~~~vI~ag~~~~~~~~~--------------------- 177 (287)
T CHL00181 140 ERDYGSEAIEILLQVMEN---------------------QRDDLVVIFAGYKDRMDKFY--------------------- 177 (287)
T ss_pred ccchHHHHHHHHHHHHhc---------------------CCCCEEEEEeCCcHHHHHHH---------------------
Confidence 122345599999999982 11347788887643222211
Q ss_pred CCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHH
Q 005667 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA 577 (684)
Q Consensus 498 ~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeA 577 (684)
...|+|.+||+.+|.|++++.+++.+|+...+... ...+++++
T Consensus 178 ------------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~-------------~~~l~~~~ 220 (287)
T CHL00181 178 ------------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ-------------QYQLTPEA 220 (287)
T ss_pred ------------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh-------------cCCCChhH
Confidence 14599999999999999999999999998754433 34466665
Q ss_pred HHHHHH----hcCCC-CCChHHHHHHHHHHHHHHHhcCCCC
Q 005667 578 LRLIAK----KAISK-NTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 578 l~~La~----~ay~~-~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
.+.+.+ ..+.. .+|+|.+++++++++.....++...
T Consensus 221 ~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 221 EKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 555444 33434 4459999999999999887776554
No 23
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9e-23 Score=228.72 Aligned_cols=220 Identities=24% Similarity=0.341 Sum_probs=173.2
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|-|++++|+.|.++|..+.+......+- | . -|+++||||||||||||++||++|++++.+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~----G---i------------~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARF----G---I------------SPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHh----c---C------------CCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 37789999999999998766643332210 1 1 245899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+.+.++. +.|+|++ ++.++++|.+++. +.++|||+||||.+..+|++ +.+ .+ .++++++||..|||-.
T Consensus 496 FlsvkgpEL~-sk~vGeS-Er~ir~iF~kAR~----~aP~IiFfDEiDsi~~~R~g-~~~-~v-~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 496 FLSVKGPELF-SKYVGES-ERAIREVFRKARQ----VAPCIIFFDEIDALAGSRGG-SSS-GV-TDRVLSQLLTEMDGLE 566 (693)
T ss_pred eeeccCHHHH-HHhcCch-HHHHHHHHHHHhh----cCCeEEehhhHHhHhhccCC-Ccc-ch-HHHHHHHHHHHccccc
Confidence 9999999998 7899999 8999999999875 67899999999999999873 222 33 4569999999999632
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
..+++++|.++|..++
T Consensus 567 -------------------~~k~V~ViAATNRpd~--------------------------------------------- 582 (693)
T KOG0730|consen 567 -------------------ALKNVLVIAATNRPDM--------------------------------------------- 582 (693)
T ss_pred -------------------ccCcEEEEeccCChhh---------------------------------------------
Confidence 2367888888774431
Q ss_pred HHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHH-HHHHHHHhcCCCCCChHH
Q 005667 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 l~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ee-Al~~La~~ay~~~~GAR~ 594 (684)
+.|+|+ +|||.+|.++.++.+...+|++.... ++.++++ -++.|++ ....+..++
T Consensus 583 -----ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k---------------kmp~~~~vdl~~La~--~T~g~SGAe 640 (693)
T KOG0730|consen 583 -----IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK---------------KMPFSEDVDLEELAQ--ATEGYSGAE 640 (693)
T ss_pred -----cCHHHcCCcccceeEeecCccHHHHHHHHHHHHh---------------cCCCCccccHHHHHH--HhccCChHH
Confidence 234444 49999999999999999999885321 4456655 6788888 356777799
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005667 595 LRSLLENILMDAMYEIP 611 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~ 611 (684)
|..+.++....++.+..
T Consensus 641 l~~lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 641 IVAVCQEAALLALRESI 657 (693)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987743
No 24
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.89 E-value=8.4e-22 Score=232.34 Aligned_cols=245 Identities=19% Similarity=0.281 Sum_probs=183.5
Q ss_pred CCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005667 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGK 343 (684)
...+..+.++.|++.++|++++|+.+.+.+...... . . .....++|+|||||||
T Consensus 309 ~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~-----~-~--------------------~~g~~i~l~GppG~GK 362 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV-----N-K--------------------IKGPILCLVGPPGVGK 362 (784)
T ss_pred ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc-----c-c--------------------CCCceEEEECCCCCCH
Confidence 345677899999999999999999998877521110 0 0 0125799999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccccc--------ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccc
Q 005667 344 TLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 344 T~LAraIA~~l~~pfv~v~~s~l~~--------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~ 415 (684)
|++++.+|+.++.+|++++++.... ..|.|...+..++.+ ..+. ..+.||+|||||++.+..
T Consensus 363 Ttl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l-~~~~-----~~~~villDEidk~~~~~---- 432 (784)
T PRK10787 363 TSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKM-AKVG-----VKNPLFLLDEIDKMSSDM---- 432 (784)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHH-HhcC-----CCCCEEEEEChhhccccc----
Confidence 9999999999999999999876542 246666545444433 2222 245799999999998651
Q ss_pred cCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccccc
Q 005667 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~ 495 (684)
.+| .+++||++|| |++.....+..-.+.+|.++++||+|+|+.
T Consensus 433 -~g~-----~~~aLlevld------~~~~~~~~d~~~~~~~dls~v~~i~TaN~~------------------------- 475 (784)
T PRK10787 433 -RGD-----PASALLEVLD------PEQNVAFSDHYLEVDYDLSDVMFVATSNSM------------------------- 475 (784)
T ss_pred -CCC-----HHHHHHHHhc------cccEEEEecccccccccCCceEEEEcCCCC-------------------------
Confidence 112 7899999998 222222333333457899999999998731
Q ss_pred ccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH
Q 005667 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e 575 (684)
.+.|+|++|+. +|.|.+|+.+++.+|+++++. .++.+ .....+..+.+++
T Consensus 476 --------------------------~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~--~k~~~-~~~l~~~~l~i~~ 525 (784)
T PRK10787 476 --------------------------NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL--PKQIE-RNALKKGELTVDD 525 (784)
T ss_pred --------------------------CCCHHHhccee-eeecCCCCHHHHHHHHHHhhh--HHHHH-HhCCCCCeEEECH
Confidence 26699999996 799999999999999998652 12222 2344556899999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005667 576 NALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 576 eAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+++++|++ +|+...|||+|++.|++++.+.+.++..
T Consensus 526 ~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~ 561 (784)
T PRK10787 526 SAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLL 561 (784)
T ss_pred HHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999998 7999999999999999999999887644
No 25
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.89 E-value=4.1e-22 Score=235.84 Aligned_cols=255 Identities=22% Similarity=0.294 Sum_probs=183.5
Q ss_pred CCCCCCCCCC---CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccc
Q 005667 255 CWGGSNLGNK---FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS 331 (684)
Q Consensus 255 ~~~g~p~~~~---~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 331 (684)
.|+++|+.+. ..+.+.+++.|++.++||+++|+.+.+.+..+..+ . .....
T Consensus 295 ~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~---~-----------------------~~~~~ 348 (775)
T TIGR00763 295 WLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR---G-----------------------KMKGP 348 (775)
T ss_pred HHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---c-----------------------CCCCc
Confidence 4556665543 33456689999999999999999999876522111 0 00124
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc--------ccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~--------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
++||+||||||||++|+++|+.++.+|+.+++..+.. ..|+|...+... ..+..+. ..+.||||||
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~-~~l~~~~-----~~~~villDE 422 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRII-QGLKKAK-----TKNPLFLLDE 422 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHH-HHHHHhC-----cCCCEEEEec
Confidence 7999999999999999999999999999998765431 357777644433 3443332 2346999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
||++.+.. ++| ..++||++||. .+.....+......++.++++||+|+|..+
T Consensus 423 idk~~~~~-----~~~-----~~~aLl~~ld~------~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~------------ 474 (775)
T TIGR00763 423 IDKIGSSF-----RGD-----PASALLEVLDP------EQNNAFSDHYLDVPFDLSKVIFIATANSID------------ 474 (775)
T ss_pred hhhcCCcc-----CCC-----HHHHHHHhcCH------HhcCccccccCCceeccCCEEEEEecCCch------------
Confidence 99998641 122 67899999982 111112222223467889999999988421
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
.+.|+|++|+. +|.|++|+.+++.+|++.++. .+..+.
T Consensus 475 --------------------------------------~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~---~~~~~~ 512 (775)
T TIGR00763 475 --------------------------------------TIPRPLLDRME-VIELSGYTEEEKLEIAKKYLI---PKALED 512 (775)
T ss_pred --------------------------------------hCCHHHhCCee-EEecCCCCHHHHHHHHHHHHH---HHHHHH
Confidence 26799999996 789999999999999987542 332222
Q ss_pred HhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005667 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 564 l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
.......+.++++++.+|++ .|+...|+|+|++.|++++..++.++..
T Consensus 513 ~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 513 HGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred cCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHHHh
Confidence 22223368899999999999 5999999999999999999998887654
No 26
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=2.3e-21 Score=201.72 Aligned_cols=230 Identities=17% Similarity=0.325 Sum_probs=162.1
Q ss_pred HHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHH
Q 005667 272 CKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 272 ~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA 351 (684)
.++|++ ++|++.+|+.|.+.+...... ..+...|...++. ..+++|+||||||||++|+++|
T Consensus 2 ~~~l~~-~~Gl~~vk~~i~~~~~~~~~~-----~~~~~~g~~~~~~------------~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 2 ERELSR-MVGLDEVKALIKEIYAWIQIN-----EKRKEEGLKTSKQ------------VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred hHHHHH-hcChHHHHHHHHHHHHHHHHH-----HHHHHcCCCCCCC------------cceEEEEcCCCCCHHHHHHHHH
Confidence 356777 699999999999877522111 1111222222222 2799999999999999999999
Q ss_pred HHh-------CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHH
Q 005667 352 RYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 352 ~~l-------~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~ 424 (684)
+.+ ..+++.++++++. ..|+|+. ...+.+++..+ .++||||||||.|... +....+..
T Consensus 64 ~~l~~~~~~~~~~~v~~~~~~l~-~~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~------~~~~~~~~ 128 (261)
T TIGR02881 64 KLFKEMNVLSKGHLIEVERADLV-GEYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG------GEKDFGKE 128 (261)
T ss_pred HHHHhcCcccCCceEEecHHHhh-hhhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC------CccchHHH
Confidence 875 2468888888887 5688876 55566666554 4589999999999742 11223345
Q ss_pred HHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005667 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~ 504 (684)
+++.|++.||.. ..++++|++++..+++...
T Consensus 129 ~i~~Ll~~~e~~---------------------~~~~~vila~~~~~~~~~~---------------------------- 159 (261)
T TIGR02881 129 AIDTLVKGMEDN---------------------RNEFVLILAGYSDEMDYFL---------------------------- 159 (261)
T ss_pred HHHHHHHHHhcc---------------------CCCEEEEecCCcchhHHHH----------------------------
Confidence 889999999821 1346777776643322111
Q ss_pred hHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHh
Q 005667 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ 584 (684)
.+.|+|.+||+..+.|++++.+++.+|++..+.. ....++++++++|++.
T Consensus 160 -----------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-------------~~~~l~~~a~~~l~~~ 209 (261)
T TIGR02881 160 -----------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-------------REYKLTEEAKWKLREH 209 (261)
T ss_pred -----------------hcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-------------cCCccCHHHHHHHHHH
Confidence 1558999999999999999999999999864322 1567899999998764
Q ss_pred c-------CCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005667 585 A-------ISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 585 a-------y~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
. -...+++|.++++++.++.++...+...
T Consensus 210 ~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 210 LYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 2345679999999999999887665543
No 27
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.2e-22 Score=210.80 Aligned_cols=218 Identities=25% Similarity=0.363 Sum_probs=160.6
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|-|.++.++.|+++|..+++......+ .| -.||.+||||||||||||+||||+|+..++.
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~----~G---------------I~PPKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEE----LG---------------IDPPKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHH----cC---------------CCCCCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 3899999999999999877664321111 01 0245899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHH---h
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---E 434 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~L---E 434 (684)
|+++.++++. .+|+|++ ...++++|..|.. ..++||||||||.+...|...+.++|.. +|.+++++| |
T Consensus 213 FIrvvgSElV-qKYiGEG-aRlVRelF~lAre----kaPsIIFiDEIDAIg~kR~d~~t~gDrE---VQRTmleLL~qlD 283 (406)
T COG1222 213 FIRVVGSELV-QKYIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIGAKRFDSGTSGDRE---VQRTMLELLNQLD 283 (406)
T ss_pred EEEeccHHHH-HHHhccc-hHHHHHHHHHHhh----cCCeEEEEechhhhhcccccCCCCchHH---HHHHHHHHHHhcc
Confidence 9999999999 6799999 7899999998865 6899999999999999987766555544 666666655 4
Q ss_pred CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhcc
Q 005667 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (684)
|. +. ..|+=+|+++|-.|+
T Consensus 284 GF-----------D~--------~~nvKVI~ATNR~D~------------------------------------------ 302 (406)
T COG1222 284 GF-----------DP--------RGNVKVIMATNRPDI------------------------------------------ 302 (406)
T ss_pred CC-----------CC--------CCCeEEEEecCCccc------------------------------------------
Confidence 42 22 235777888775431
Q ss_pred chHHHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH-HHHHHHHHhcCCCCCC
Q 005667 515 SSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTG 591 (684)
Q Consensus 515 ~~dl~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e-eAl~~La~~ay~~~~G 591 (684)
+.|.|+ +|||..|.|+.++.+...+|++-+.. ++.+++ --++.|++. ..+..
T Consensus 303 --------LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr---------------kM~l~~dvd~e~la~~--~~g~s 357 (406)
T COG1222 303 --------LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR---------------KMNLADDVDLELLARL--TEGFS 357 (406)
T ss_pred --------cChhhcCCCcccceeecCCCCHHHHHHHHHHHhh---------------hccCccCcCHHHHHHh--cCCCc
Confidence 223443 89999999999999999999985322 223333 235666773 45555
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 005667 592 ARGLRSLLENILMDAMYE 609 (684)
Q Consensus 592 AR~Lr~iIe~~l~~al~e 609 (684)
.-+|+.++..+=.-|+.+
T Consensus 358 GAdlkaictEAGm~AiR~ 375 (406)
T COG1222 358 GADLKAICTEAGMFAIRE 375 (406)
T ss_pred hHHHHHHHHHHhHHHHHh
Confidence 568888877665555443
No 28
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=7.3e-22 Score=201.11 Aligned_cols=215 Identities=29% Similarity=0.445 Sum_probs=156.9
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhh-cccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESS-QKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
.|+||++||+.-+..+. |.+ ...+ ..| .|++|||+||||||||++|+++|++.+.
T Consensus 122 dViGqEeAK~kcrli~~--yLe--nPe~Fg~W--------------------APknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 122 DVIGQEEAKRKCRLIME--YLE--NPERFGDW--------------------APKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred hhhchHHHHHHHHHHHH--Hhh--ChHHhccc--------------------CcceeEEECCCCccHHHHHHHHhcccCC
Confidence 48999999997665543 111 1111 112 2589999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
||+.+.++++. ..|+|.. ..++++++..+. ...+||+||||+|.+..+|.-...-+|++- +.|+||..|||.
T Consensus 178 p~l~vkat~li-GehVGdg-ar~Ihely~rA~----~~aPcivFiDE~DAiaLdRryQelRGDVsE--iVNALLTelDgi 249 (368)
T COG1223 178 PLLLVKATELI-GEHVGDG-ARRIHELYERAR----KAAPCIVFIDELDAIALDRRYQELRGDVSE--IVNALLTELDGI 249 (368)
T ss_pred ceEEechHHHH-HHHhhhH-HHHHHHHHHHHH----hcCCeEEEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhccCc
Confidence 99999999998 4689987 788899998875 478999999999999998765444556553 899999999963
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccch
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
. ....++.|+++|..+|
T Consensus 250 ~-------------------eneGVvtIaaTN~p~~-------------------------------------------- 266 (368)
T COG1223 250 K-------------------ENEGVVTIAATNRPEL-------------------------------------------- 266 (368)
T ss_pred c-------------------cCCceEEEeecCChhh--------------------------------------------
Confidence 2 1223778888774331
Q ss_pred HHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
+.|..++||..-|.|.-++.++...|++.++..+ .+.++.. +++++++ ..++..|.+.
T Consensus 267 ------LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~-------------Plpv~~~-~~~~~~~--t~g~SgRdik 324 (368)
T COG1223 267 ------LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF-------------PLPVDAD-LRYLAAK--TKGMSGRDIK 324 (368)
T ss_pred ------cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC-------------CCccccC-HHHHHHH--hCCCCchhHH
Confidence 4588889999999999999999999988643222 3444444 7777774 4566667654
Q ss_pred -HHHHHHHHHHHhc
Q 005667 597 -SLLENILMDAMYE 609 (684)
Q Consensus 597 -~iIe~~l~~al~e 609 (684)
+++...+..++.+
T Consensus 325 ekvlK~aLh~Ai~e 338 (368)
T COG1223 325 EKVLKTALHRAIAE 338 (368)
T ss_pred HHHHHHHHHHHHHh
Confidence 3444445444443
No 29
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.87 E-value=3e-22 Score=196.57 Aligned_cols=166 Identities=40% Similarity=0.596 Sum_probs=125.3
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCC----CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l~~----pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
|..++||+||+|||||.+|+++|+.+.. +++.+||+++.+ +.+....+..++..+++.+...+.+|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 3589999999999999999999999985 999999999875 33334556667777777777888899999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCC
Q 005667 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 405 DkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
||++++ .+.+.|++++.+|+.||++||+..+ .+..+ ..++++|++||||+|+.+.......+..
T Consensus 78 dKa~~~---~~~~~~v~~~~V~~~LL~~le~g~~--------~d~~g--~~vd~~n~ifI~Tsn~~~~~~~~~~~~~--- 141 (171)
T PF07724_consen 78 DKAHPS---NSGGADVSGEGVQNSLLQLLEGGTL--------TDSYG--RTVDTSNIIFIMTSNFGAEEIIDASRSG--- 141 (171)
T ss_dssp GGCSHT---TTTCSHHHHHHHHHHHHHHHHHSEE--------EETTC--CEEEGTTEEEEEEESSSTHHHHHCHHHC---
T ss_pred hhcccc---ccccchhhHHHHHHHHHHHhcccce--------ecccc--eEEEeCCceEEEecccccchhhhhhccc---
Confidence 999986 4467899999999999999995444 33444 4899999999999999875544422211
Q ss_pred CCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceE
Q 005667 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL 534 (684)
Q Consensus 485 IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~i 534 (684)
............++++++|+|||++|||.+
T Consensus 142 --------------------~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 --------------------EAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp --------------------TCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred --------------------cccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 000111122235688899999999999964
No 30
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-21 Score=221.31 Aligned_cols=245 Identities=27% Similarity=0.326 Sum_probs=174.1
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|-|.+++|..+.+.|..+++...-.... -++.+++|||||||||||++|||+|.++...
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssg--------------------lrkRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSG--------------------LRKRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhcc--------------------ccccceeEEECCCCCchHHHHHHHHhhceee
Confidence 38899999999999998766543221110 0113899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+...++. ..|+|++ +..+++.|++|+. +.+||||+||+|.+.+.|+..++++.+.++ +.++||..|||-.
T Consensus 733 FlSVKGPELL-NMYVGqS-E~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELDgls 805 (953)
T KOG0736|consen 733 FLSVKGPELL-NMYVGQS-EENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELDGLS 805 (953)
T ss_pred EEeecCHHHH-HHHhcch-HHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhhccc
Confidence 9999999998 6799999 8899999999874 899999999999999999998888888876 8999999999521
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
. . +.+.+.+|.++|..||
T Consensus 806 ~----------~-------~s~~VFViGATNRPDL--------------------------------------------- 823 (953)
T KOG0736|consen 806 D----------S-------SSQDVFVIGATNRPDL--------------------------------------------- 823 (953)
T ss_pred C----------C-------CCCceEEEecCCCccc---------------------------------------------
Confidence 1 0 2333555555554332
Q ss_pred HHHcCCCcccc--cccceEEEcCCCCH-HHHHHHHhchHHHHHHHHHHHHhhCCcceecCHH-HHHHHHHhcCCCCCChH
Q 005667 518 LIAYGLIPEFV--GRFPVLVSLLALTE-NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGAR 593 (684)
Q Consensus 518 l~~~~f~PeLl--~R~d~iI~f~pLs~-eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ee-Al~~La~~ay~~~~GAR 593 (684)
+.|.|+ +|||..+.+.+-.. +...+|++ ++-++ +.++++ -+..+|++ .+.++..-
T Consensus 824 -----LDpALLRPGRFDKLvyvG~~~d~esk~~vL~----AlTrk-----------FkLdedVdL~eiAk~-cp~~~TGA 882 (953)
T KOG0736|consen 824 -----LDPALLRPGRFDKLVYVGPNEDAESKLRVLE----ALTRK-----------FKLDEDVDLVEIAKK-CPPNMTGA 882 (953)
T ss_pred -----cChhhcCCCccceeEEecCCccHHHHHHHHH----HHHHH-----------ccCCCCcCHHHHHhh-CCcCCchh
Confidence 112222 89999888877755 44555554 34332 334433 36677887 45555556
Q ss_pred HHHHHHHHHHHHHHhcCCCCcC-C-----CccccEEEecccccCc
Q 005667 594 GLRSLLENILMDAMYEIPDVRA-G-----DEVIDAVVVDEEAVGS 632 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~~~~~~-g-----~~~i~~v~vde~~v~~ 632 (684)
.|-.++.+++..|+.+....-+ | .++-..+.|+++++..
T Consensus 883 DlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflk 927 (953)
T KOG0736|consen 883 DLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLK 927 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHH
Confidence 7888888888887765432211 1 2334566666665544
No 31
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.3e-21 Score=203.02 Aligned_cols=127 Identities=28% Similarity=0.485 Sum_probs=112.2
Q ss_pred ccChHHHHHHHHHHHHhhHH--hHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 279 VIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~--ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
|.|.++||+.|.++|..+.. ..+++.+++| ++||++||||||||+||+|+|.+++.
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPW----------------------kgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW----------------------KGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhccccc----------------------ceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 88999999999999986654 4466666555 89999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.|+.|+.+.++ ++|.|++ +++++-+|+.+.. ..+++|||||||.|+..|+.. +.++..+++.+.||..|||
T Consensus 272 TFFNVSsstlt-SKwRGeS-EKlvRlLFemARf----yAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 272 TFFNVSSSTLT-SKWRGES-EKLVRLLFEMARF----YAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDG 342 (491)
T ss_pred eEEEechhhhh-hhhccch-HHHHHHHHHHHHH----hCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhc
Confidence 99999999999 8899999 8999999999876 489999999999999987753 5566677899999999996
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=2.5e-20 Score=188.68 Aligned_cols=202 Identities=26% Similarity=0.417 Sum_probs=128.1
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.|++ ++||++++..+..++.....| ..+..|+|||||||+|||+||+.||++
T Consensus 22 ~L~e-fiGQ~~l~~~l~i~i~aa~~r---------------------------~~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 22 SLDE-FIGQEHLKGNLKILIRAAKKR---------------------------GEALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp SCCC-S-S-HHHHHHHHHHHHHHHCT---------------------------TS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred CHHH-ccCcHHHHhhhHHHHHHHHhc---------------------------CCCcceEEEECCCccchhHHHHHHHhc
Confidence 4455 599999999988777422111 001269999999999999999999999
Q ss_pred hCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHH
Q 005667 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 354 l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
++.+|...++..+... ++.. .++..- ..+.||||||||++.+. +|+.|+.+|
T Consensus 74 ~~~~~~~~sg~~i~k~-------~dl~-~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~Llpam 125 (233)
T PF05496_consen 74 LGVNFKITSGPAIEKA-------GDLA-AILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAM 125 (233)
T ss_dssp CT--EEEEECCC--SC-------HHHH-HHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHH
T ss_pred cCCCeEeccchhhhhH-------HHHH-HHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHh
Confidence 9999998888655321 2222 222211 24579999999999998 999999999
Q ss_pred hCceeee-cCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhh
Q 005667 434 EGTVVNV-PEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 434 Eg~~v~V-p~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (684)
|+..+++ -..| ...+.+.++.....+|.+++-.+
T Consensus 126 Ed~~idiiiG~g----~~ar~~~~~l~~FTligATTr~g----------------------------------------- 160 (233)
T PF05496_consen 126 EDGKIDIIIGKG----PNARSIRINLPPFTLIGATTRAG----------------------------------------- 160 (233)
T ss_dssp HCSEEEEEBSSS----SS-BEEEEE----EEEEEESSGC-----------------------------------------
T ss_pred ccCeEEEEeccc----cccceeeccCCCceEeeeecccc-----------------------------------------
Confidence 9666543 1222 34456788888888888766321
Q ss_pred ccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCCh
Q 005667 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GA 592 (684)
.+.++|++||..+..+..|+.+|+.+|+++.... ..+.+++++...|+.++ .+..
T Consensus 161 ---------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~-------------l~i~i~~~~~~~Ia~rs---rGtP 215 (233)
T PF05496_consen 161 ---------LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI-------------LNIEIDEDAAEEIARRS---RGTP 215 (233)
T ss_dssp ---------CTSHCCCTTSSEEEE----THHHHHHHHHHCCHC-------------TT-EE-HHHHHHHHHCT---TTSH
T ss_pred ---------ccchhHHhhcceecchhcCCHHHHHHHHHHHHHH-------------hCCCcCHHHHHHHHHhc---CCCh
Confidence 2678999999999999999999999999864332 37889999999999964 3334
Q ss_pred HHHHHHHHH
Q 005667 593 RGLRSLLEN 601 (684)
Q Consensus 593 R~Lr~iIe~ 601 (684)
|-..+++++
T Consensus 216 RiAnrll~r 224 (233)
T PF05496_consen 216 RIANRLLRR 224 (233)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 33
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.2e-21 Score=207.50 Aligned_cols=231 Identities=23% Similarity=0.324 Sum_probs=165.4
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005667 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~ 345 (684)
.+|......--+.|-|.|+||++|.+.|. .++..... .+.| - .-|.+|||+||||||||+
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kf----trLG---G------------KLPKGVLLvGPPGTGKTl 352 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVE-FLKDPTKF----TRLG---G------------KLPKGVLLVGPPGTGKTL 352 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHH-HhcCcHHh----hhcc---C------------cCCCceEEeCCCCCchhH
Confidence 34444444434558999999999999885 11111000 0111 1 123899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHH
Q 005667 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 346 LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~v 425 (684)
||||+|.+.++||+....+++.+ -|+|.. ..+++++|..+.. ..||||||||||.+..+|...... ...+.
T Consensus 353 LARAvAGEA~VPFF~~sGSEFdE-m~VGvG-ArRVRdLF~aAk~----~APcIIFIDEiDavG~kR~~~~~~---y~kqT 423 (752)
T KOG0734|consen 353 LARAVAGEAGVPFFYASGSEFDE-MFVGVG-ARRVRDLFAAAKA----RAPCIIFIDEIDAVGGKRNPSDQH---YAKQT 423 (752)
T ss_pred HHHHhhcccCCCeEeccccchhh-hhhccc-HHHHHHHHHHHHh----cCCeEEEEechhhhcccCCccHHH---HHHHH
Confidence 99999999999999999999985 499998 7899999998763 689999999999998886543211 34568
Q ss_pred HHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCccc-HHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005667 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 426 q~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~d-Le~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~ 504 (684)
+++||..|||..-+ ..+|+|.++|+.+ ||+++
T Consensus 424 lNQLLvEmDGF~qN-------------------eGiIvigATNfpe~LD~AL---------------------------- 456 (752)
T KOG0734|consen 424 LNQLLVEMDGFKQN-------------------EGIIVIGATNFPEALDKAL---------------------------- 456 (752)
T ss_pred HHHHHHHhcCcCcC-------------------CceEEEeccCChhhhhHHh----------------------------
Confidence 99999999975421 2488888888764 33332
Q ss_pred hHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHH-HHHHHH
Q 005667 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAK 583 (684)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeA-l~~La~ 583 (684)
.+| +|||..|.++.++..-..+|+..++.. +.+++++ ...||+
T Consensus 457 ------------------~RP---GRFD~~v~Vp~PDv~GR~eIL~~yl~k---------------i~~~~~VD~~iiAR 500 (752)
T KOG0734|consen 457 ------------------TRP---GRFDRHVTVPLPDVRGRTEILKLYLSK---------------IPLDEDVDPKIIAR 500 (752)
T ss_pred ------------------cCC---CccceeEecCCCCcccHHHHHHHHHhc---------------CCcccCCCHhHhcc
Confidence 234 799999999999999999999875432 2233222 233344
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHhcC
Q 005667 584 KAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 584 ~ay~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
-..++..-+|.|+|...-..|..+.
T Consensus 501 --GT~GFsGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 501 --GTPGFSGADLANLVNQAALKAAVDG 525 (752)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHhcC
Confidence 3566667899999998877776554
No 34
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.9e-20 Score=206.35 Aligned_cols=222 Identities=24% Similarity=0.329 Sum_probs=165.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|-|+++++.+|..+|..+.++..... +.|.. +|.+|||+||||||||+||+|+|++.+..|
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k----~lGi~---------------~PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFK----ALGID---------------APSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHH----HhCCC---------------CCCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 78999999999999987777643222 11211 248999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+...++. ..|+|++ +..++.+|.++.. ..+||||+||||.|.+.|+..+ ...+.++.++||..|||-.
T Consensus 574 isVKGPELl-NkYVGES-ErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~- 643 (802)
T KOG0733|consen 574 ISVKGPELL-NKYVGES-ERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLE- 643 (802)
T ss_pred EeecCHHHH-HHHhhhH-HHHHHHHHHHhhc----CCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccc-
Confidence 999999998 7899999 8999999999864 6899999999999999987643 3445669999999999632
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccH-HHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dL-e~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
+-+++.+|.++|..|+ |.+
T Consensus 644 ------------------~R~gV~viaATNRPDiIDpA------------------------------------------ 663 (802)
T KOG0733|consen 644 ------------------ERRGVYVIAATNRPDIIDPA------------------------------------------ 663 (802)
T ss_pred ------------------cccceEEEeecCCCcccchh------------------------------------------
Confidence 2334666767664431 110
Q ss_pred HHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC-HHHHHHHHHhcCCCCCChHHHH
Q 005667 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 518 l~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~-eeAl~~La~~ay~~~~GAR~Lr 596 (684)
-++| +|||.++.+..++.+|...|++.. .+ +.+..++ +--++.|+..--..++..-.|.
T Consensus 664 ----iLRP---GRlDk~LyV~lPn~~eR~~ILK~~----tk---------n~k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 664 ----ILRP---GRLDKLLYVGLPNAEERVAILKTI----TK---------NTKPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred ----hcCC---CccCceeeecCCCHHHHHHHHHHH----hc---------cCCCCCCcccCHHHHhhcccccCCchhhHH
Confidence 1334 799999999999999999999852 11 1133333 3346677775444566667888
Q ss_pred HHHHHHHHHHHhc
Q 005667 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
.+++..-..++.+
T Consensus 724 aLvreAsi~AL~~ 736 (802)
T KOG0733|consen 724 ALVREASILALRE 736 (802)
T ss_pred HHHHHHHHHHHHH
Confidence 8888776666544
No 35
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.3e-20 Score=211.70 Aligned_cols=221 Identities=23% Similarity=0.299 Sum_probs=158.5
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|+++||+.|.+.|. .++...... .. + ...|+++||+||||||||+||+|+|.+.++|
T Consensus 312 DVAG~deAK~El~E~V~-fLKNP~~Y~----~l--------------G-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP 371 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVK-FLKNPEQYQ----EL--------------G-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 371 (774)
T ss_pred cccCcHHHHHHHHHHHH-HhcCHHHHH----Hc--------------C-CcCcCceEEECCCCCcHHHHHHHHhcccCCc
Confidence 38999999999999985 111111000 00 1 1235899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcc-ccccCCCCchHHHHHHHHHHHhCc
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE-SLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~-~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
|+.++++++.+ .++|.. ...++++|..+.. ..|+||||||||.+...|. ...++.+..+|..+++||..|||.
T Consensus 372 F~svSGSEFvE-~~~g~~-asrvr~lf~~ar~----~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 372 FFSVSGSEFVE-MFVGVG-ASRVRDLFPLARK----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred eeeechHHHHH-Hhcccc-hHHHHHHHHHhhc----cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 99999999995 477776 7899999998764 5899999999999999984 334566777888999999999964
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCccc-HHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccc
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~d-Le~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.. .+++||++++|..| ||.++
T Consensus 446 ~~-------------------~~~vi~~a~tnr~d~ld~al--------------------------------------- 467 (774)
T KOG0731|consen 446 ET-------------------SKGVIVLAATNRPDILDPAL--------------------------------------- 467 (774)
T ss_pred cC-------------------CCcEEEEeccCCccccCHHh---------------------------------------
Confidence 32 25588888877543 11111
Q ss_pred hHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHH
Q 005667 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 516 ~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~L 595 (684)
++| +|||..|.+..++.....+|++.++... .+..++.-+..|+. ...++-.-.|
T Consensus 468 -------lrp---GRfdr~i~i~~p~~~~r~~i~~~h~~~~-------------~~~~e~~dl~~~a~--~t~gf~gadl 522 (774)
T KOG0731|consen 468 -------LRP---GRFDRQIQIDLPDVKGRASILKVHLRKK-------------KLDDEDVDLSKLAS--LTPGFSGADL 522 (774)
T ss_pred -------cCC---CccccceeccCCchhhhHHHHHHHhhcc-------------CCCcchhhHHHHHh--cCCCCcHHHH
Confidence 223 7999999999999999999998643322 33334444444555 3444444567
Q ss_pred HHHHHHHHHHHH
Q 005667 596 RSLLENILMDAM 607 (684)
Q Consensus 596 r~iIe~~l~~al 607 (684)
.+++...-..+.
T Consensus 523 ~n~~neaa~~a~ 534 (774)
T KOG0731|consen 523 ANLCNEAALLAA 534 (774)
T ss_pred HhhhhHHHHHHH
Confidence 776665544443
No 36
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-19 Score=188.21 Aligned_cols=127 Identities=27% Similarity=0.452 Sum_probs=107.4
Q ss_pred cccChHHHHHHHHHHHHhhHHh--HhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~r--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.|.|.+.||++|+++|..+.+- ++.+.+++ .+++||+|||||||+.||+++|.+.+
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~P----------------------wrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKP----------------------WRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCc----------------------ceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 3789999999999999866653 34443333 38999999999999999999999999
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..|+.++.++++ +.|.|++ +..+..+|+.++. ..++||||||||.++..|+. ...+..+++...||-.|.|
T Consensus 192 STFFSvSSSDLv-SKWmGES-EkLVknLFemARe----~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 192 STFFSVSSSDLV-SKWMGES-EKLVKNLFEMARE----NKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQG 262 (439)
T ss_pred CceEEeehHHHH-HHHhccH-HHHHHHHHHHHHh----cCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhc
Confidence 999999999999 8899999 8999999998865 68999999999999887543 3344556799999999985
No 37
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.80 E-value=3.4e-19 Score=191.83 Aligned_cols=283 Identities=18% Similarity=0.242 Sum_probs=177.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---~ 355 (684)
++|++.+.+.+.+.+. +.. ....+|||+|++||||+++|++|.... +
T Consensus 1 liG~S~~m~~~~~~~~----~~a--------------------------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~ 50 (329)
T TIGR02974 1 LIGESNAFLEVLEQVS----RLA--------------------------PLDRPVLIIGERGTGKELIAARLHYLSKRWQ 50 (329)
T ss_pred CCcCCHHHHHHHHHHH----HHh--------------------------CCCCCEEEECCCCChHHHHHHHHHHhcCccC
Confidence 4788888888877775 111 012789999999999999999997765 4
Q ss_pred CCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005667 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.||+.+||..+.+ ...+|+.. +.+........+.++.+.+|+||||||+.|+.. +|..|++
T Consensus 51 ~pfv~vnc~~~~~~~l~~~lfG~~~-g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~ 115 (329)
T TIGR02974 51 GPLVKLNCAALSENLLDSELFGHEA-GAFTGAQKRHQGRFERADGGTLFLDELATASLL--------------VQEKLLR 115 (329)
T ss_pred CCeEEEeCCCCChHHHHHHHhcccc-ccccCcccccCCchhhCCCCEEEeCChHhCCHH--------------HHHHHHH
Confidence 7999999987753 12223221 111111112234567788999999999999998 9999999
Q ss_pred HHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhh
Q 005667 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (684)
+|+...+. ..|. .. .-..++.+|++++ .++++.+.++
T Consensus 116 ~l~~~~~~--~~g~-----~~---~~~~~~RiI~at~-~~l~~~~~~g-------------------------------- 152 (329)
T TIGR02974 116 VIEYGEFE--RVGG-----SQ---TLQVDVRLVCATN-ADLPALAAEG-------------------------------- 152 (329)
T ss_pred HHHcCcEE--ecCC-----Cc---eeccceEEEEech-hhHHHHhhcC--------------------------------
Confidence 99843321 0111 11 1123466676655 2343333322
Q ss_pred hccchHHHHcCCCcccccccc-eEEEcCCCC--HHHHHHHHhchHHHHHHHHHHHHhhCCcc--eecCHHHHHHHHHhcC
Q 005667 512 TVESSDLIAYGLIPEFVGRFP-VLVSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVK--LHFTENALRLIAKKAI 586 (684)
Q Consensus 512 ~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs--~eel~~Il~~~l~~L~kqy~~~l~~~gi~--l~i~eeAl~~La~~ay 586 (684)
.|+++|+.|+. ..|.++||. .+|+..++..++..+..++ +.. ..+++++++.|.. |
T Consensus 153 ----------~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-------~~~~~~~ls~~a~~~L~~--y 213 (329)
T TIGR02974 153 ----------RFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL-------GLPLFPGFTPQAREQLLE--Y 213 (329)
T ss_pred ----------chHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHh-------CCCCCCCcCHHHHHHHHh--C
Confidence 36788888985 468899998 4899998887665554432 223 5799999999999 8
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecc----cccCcccC----CC-c--c--eEEcCCChHHHHHH
Q 005667 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDE----EAVGSEDR----GC-G--A--KILYGKGALDRYLA 653 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde----~~v~~~~~----g~-~--~--~i~~~~g~l~~~l~ 653 (684)
+|++|+|+|+++|++++..+-.+..... +..+... ... ..+..... .. . . ........++..+.
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 290 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRHGLEEAPID--EIIIDPF-ASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAQQ 290 (329)
T ss_pred CCCchHHHHHHHHHHHHHhCCCCccchh--hcccccc-ccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 9999999999999998875411111000 0000000 000 00000000 00 0 0 00000135778889
Q ss_pred HHhhhhhhhccccCCCCC
Q 005667 654 QHKRKDLETNVAGADGEP 671 (684)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~ 671 (684)
+.|+..|...++.++|+.
T Consensus 291 ~~E~~~I~~aL~~~~gn~ 308 (329)
T TIGR02974 291 DYEIELLQQALAEAQFNQ 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCH
Confidence 999999999999988875
No 38
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.79 E-value=7.8e-19 Score=199.16 Aligned_cols=280 Identities=17% Similarity=0.227 Sum_probs=178.9
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.++|++.+++.+.+.+. +. .....+|||+|++||||+++|++|....
T Consensus 188 ~iig~s~~~~~~~~~i~----~~--------------------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~ 237 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIE----VV--------------------------AASDLNVLILGETGVGKELVARAIHAASPRA 237 (509)
T ss_pred ceeecCHHHHHHHHHHH----HH--------------------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcC
Confidence 47888888888877775 11 1113799999999999999999998775
Q ss_pred CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ ..++|+.. ..+........+.++.+.+|+||||||+.|+.. +|..|+
T Consensus 238 ~~p~v~v~c~~~~~~~~e~~lfG~~~-g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll 302 (509)
T PRK05022 238 DKPLVYLNCAALPESLAESELFGHVK-GAFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLL 302 (509)
T ss_pred CCCeEEEEcccCChHHHHHHhcCccc-cccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHH
Confidence 57999999998753 22333321 111111111234466788999999999999988 999999
Q ss_pred HHHhCcee-eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHH
Q 005667 431 KMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 431 ~~LEg~~v-~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~l 509 (684)
++++...+ .+ |. ...+. .++-+|++++ .++++.+.+.
T Consensus 303 ~~l~~~~~~~~---g~-----~~~~~---~~~RiI~~t~-~~l~~~~~~~------------------------------ 340 (509)
T PRK05022 303 RVLQYGEIQRV---GS-----DRSLR---VDVRVIAATN-RDLREEVRAG------------------------------ 340 (509)
T ss_pred HHHhcCCEeeC---CC-----Cccee---cceEEEEecC-CCHHHHHHcC------------------------------
Confidence 99984332 21 11 11112 2355666654 3454444433
Q ss_pred hhhccchHHHHcCCCcccccccceE-EEcCCCCH--HHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcC
Q 005667 510 METVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 510 l~~v~~~dl~~~~f~PeLl~R~d~i-I~f~pLs~--eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay 586 (684)
.|.++|+.|+..+ |.++||.+ +|+..++..++.++.+++ . ...+.+++++++.|.. |
T Consensus 341 ------------~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~----~--~~~~~~s~~a~~~L~~--y 400 (509)
T PRK05022 341 ------------RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARL----G--LRSLRLSPAAQAALLA--Y 400 (509)
T ss_pred ------------CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHc----C--CCCCCCCHHHHHHHHh--C
Confidence 3667777887643 78888865 788888877555443322 1 1246799999999999 8
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcccC----CC--cceE-EcCCChHHHHHHHHhhhh
Q 005667 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDR----GC--GAKI-LYGKGALDRYLAQHKRKD 659 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~~----g~--~~~i-~~~~g~l~~~l~~~~~~~ 659 (684)
+|++|+|+|+++|++++..+.....+. ...|+.+++..... .. .... ......+...+++.|++.
T Consensus 401 ~WPGNvrEL~~~i~ra~~~~~~~~~~~--------~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~ 472 (509)
T PRK05022 401 DWPGNVRELEHVISRAALLARARGAGR--------IVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQL 472 (509)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCccCc--------cceecHHHcCcccccccCccccccccccccccCHHHHHHHHHHHH
Confidence 999999999999999887653321110 11222222211100 00 0000 011235677788999999
Q ss_pred hhhccccCCCCCC
Q 005667 660 LETNVAGADGEPE 672 (684)
Q Consensus 660 ~~~~~~~~~~~~~ 672 (684)
|...++.++|+..
T Consensus 473 I~~aL~~~~gn~~ 485 (509)
T PRK05022 473 IRQALAQHQGNWA 485 (509)
T ss_pred HHHHHHHcCCCHH
Confidence 9999999998863
No 39
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.78 E-value=3.4e-18 Score=192.28 Aligned_cols=217 Identities=22% Similarity=0.306 Sum_probs=154.6
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|++.+|+.+.......-.. .+ ..|. .+++++||+||||||||++|+++|+.++.|
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~----~~---~~gl---------------~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQ----AS---NYGL---------------PTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHH----HH---hcCC---------------CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3799999999887654311110 00 1111 124899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++.+. .+|+|++ +..++.+|..+. ...+|||||||||++...+...+.+ ....+++..|+..|++
T Consensus 287 ~~~l~~~~l~-~~~vGes-e~~l~~~f~~A~----~~~P~IL~IDEID~~~~~~~~~~d~--~~~~rvl~~lL~~l~~-- 356 (489)
T CHL00195 287 LLRLDVGKLF-GGIVGES-ESRMRQMIRIAE----ALSPCILWIDEIDKAFSNSESKGDS--GTTNRVLATFITWLSE-- 356 (489)
T ss_pred EEEEEhHHhc-ccccChH-HHHHHHHHHHHH----hcCCcEEEehhhhhhhccccCCCCc--hHHHHHHHHHHHHHhc--
Confidence 9999999887 6799998 678888887653 3578999999999987653322111 1234578888888872
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
..+++++|+|+|..+
T Consensus 357 -------------------~~~~V~vIaTTN~~~---------------------------------------------- 371 (489)
T CHL00195 357 -------------------KKSPVFVVATANNID---------------------------------------------- 371 (489)
T ss_pred -------------------CCCceEEEEecCChh----------------------------------------------
Confidence 123477788877432
Q ss_pred HHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHH
Q 005667 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 l~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~L 595 (684)
.+.|+++ +|||.++.++.++.++..+|++..+... + ....++..++.|++ ...++...+|
T Consensus 372 ----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~-----------~-~~~~~~~dl~~La~--~T~GfSGAdI 433 (489)
T CHL00195 372 ----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF-----------R-PKSWKKYDIKKLSK--LSNKFSGAEI 433 (489)
T ss_pred ----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc-----------C-CCcccccCHHHHHh--hcCCCCHHHH
Confidence 1446665 5999999999999999999998743322 0 01123455778888 4678888999
Q ss_pred HHHHHHHHHHHHhc
Q 005667 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
++++...+..+..+
T Consensus 434 ~~lv~eA~~~A~~~ 447 (489)
T CHL00195 434 EQSIIEAMYIAFYE 447 (489)
T ss_pred HHHHHHHHHHHHHc
Confidence 99998887777643
No 40
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=4.4e-18 Score=175.91 Aligned_cols=190 Identities=27% Similarity=0.442 Sum_probs=144.7
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.|+++ +||+++|+.|...+.....| . ...-|+||+||||.|||+||..||++
T Consensus 24 ~l~ef-iGQ~~vk~~L~ifI~AAk~r-------~--------------------e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 24 TLDEF-IGQEKVKEQLQIFIKAAKKR-------G--------------------EALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred cHHHh-cChHHHHHHHHHHHHHHHhc-------C--------------------CCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 45555 99999999999888633221 0 11379999999999999999999999
Q ss_pred hCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHH
Q 005667 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 354 l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
++..+-..++..+.-++ +....++. . ..+-||||||||++.+. +-..|..+|
T Consensus 76 mgvn~k~tsGp~leK~g----DlaaiLt~---L-------e~~DVLFIDEIHrl~~~--------------vEE~LYpaM 127 (332)
T COG2255 76 LGVNLKITSGPALEKPG----DLAAILTN---L-------EEGDVLFIDEIHRLSPA--------------VEEVLYPAM 127 (332)
T ss_pred hcCCeEecccccccChh----hHHHHHhc---C-------CcCCeEEEehhhhcChh--------------HHHHhhhhh
Confidence 99998877776665332 22222222 2 23469999999999988 889999999
Q ss_pred hCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhc
Q 005667 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 434 Eg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v 513 (684)
|+..++|- -| ..+..+.+.++...+.+|-+++-.+
T Consensus 128 EDf~lDI~-IG--~gp~Arsv~ldLppFTLIGATTr~G------------------------------------------ 162 (332)
T COG2255 128 EDFRLDII-IG--KGPAARSIRLDLPPFTLIGATTRAG------------------------------------------ 162 (332)
T ss_pred hheeEEEE-Ec--cCCccceEeccCCCeeEeeeccccc------------------------------------------
Confidence 98887752 01 2345567788888888887766322
Q ss_pred cchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhc
Q 005667 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 514 ~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~a 585 (684)
.+..+|+.||..+..+.-|+.+|+.+|+.+....+ .+.+++++...|++++
T Consensus 163 --------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-------------~i~i~~~~a~eIA~rS 213 (332)
T COG2255 163 --------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-------------GIEIDEEAALEIARRS 213 (332)
T ss_pred --------cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-------------CCCCChHHHHHHHHhc
Confidence 25688999999999999999999999998754333 7889999999999975
No 41
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.77 E-value=9.3e-18 Score=189.79 Aligned_cols=217 Identities=24% Similarity=0.306 Sum_probs=148.0
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++++|+.+.+.+.. ++...... ..+ ..++.++||+||||||||++|+++|+.++.+|
T Consensus 57 i~g~~~~k~~l~~~~~~-l~~~~~~~----~~g---------------~~~~~giLL~GppGtGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDF-LKNPSKFT----KLG---------------AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred hCCHHHHHHHHHHHHHH-HHCHHHHH----hcC---------------CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 69999999999987752 22110000 000 01247899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|.|.. ...++.+|..+.. ..++||||||||.+...+.....+.+...+.+++.||..||+..
T Consensus 117 ~~i~~~~~~-~~~~g~~-~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~- 189 (495)
T TIGR01241 117 FSISGSDFV-EMFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG- 189 (495)
T ss_pred eeccHHHHH-HHHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc-
Confidence 999998876 4577776 5677888876532 46899999999999987654322334445568889999998421
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+|+|..+
T Consensus 190 ------------------~~~~v~vI~aTn~~~----------------------------------------------- 204 (495)
T TIGR01241 190 ------------------TNTGVIVIAATNRPD----------------------------------------------- 204 (495)
T ss_pred ------------------CCCCeEEEEecCChh-----------------------------------------------
Confidence 123477777777432
Q ss_pred HHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 ~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.|.++ +|||..+.++.++.++..+|++..+... .+. ++..+..+++. ..++..+.|+
T Consensus 205 ---~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~-------------~~~-~~~~l~~la~~--t~G~sgadl~ 265 (495)
T TIGR01241 205 ---VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK-------------KLA-PDVDLKAVARR--TPGFSGADLA 265 (495)
T ss_pred ---hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC-------------CCC-cchhHHHHHHh--CCCCCHHHHH
Confidence 1224444 5999999999999999999988632211 111 23345566663 4455567788
Q ss_pred HHHHHHHHHH
Q 005667 597 SLLENILMDA 606 (684)
Q Consensus 597 ~iIe~~l~~a 606 (684)
++++.....+
T Consensus 266 ~l~~eA~~~a 275 (495)
T TIGR01241 266 NLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHH
Confidence 7777665444
No 42
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.8e-18 Score=189.64 Aligned_cols=181 Identities=25% Similarity=0.339 Sum_probs=136.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|-|.+.....|.+.+.. .++... +...+ -.|+++|||+||||||||.||++||.+++.||
T Consensus 192 iGG~d~~~~el~~li~~-i~~Pe~------------------~~~lG-v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 192 IGGLDKTLAELCELIIH-IKHPEV------------------FSSLG-VRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred ccChHHHHHHHHHHHHH-hcCchh------------------HhhcC-CCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 68999999999998852 332110 00011 13569999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++.++. +|+.|++ +..++++|..+.. ..+||+||||||.+.+.|... +++.. +++..+||..||+-..
T Consensus 252 ~~isApeiv-SGvSGES-EkkiRelF~~A~~----~aPcivFiDeIDAI~pkRe~a--qreME-rRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 252 LSISAPEIV-SGVSGES-EKKIRELFDQAKS----NAPCIVFIDEIDAITPKREEA--QREME-RRIVAQLLTSMDELSN 322 (802)
T ss_pred Eeecchhhh-cccCccc-HHHHHHHHHHHhc----cCCeEEEeecccccccchhhH--HHHHH-HHHHHHHHHhhhcccc
Confidence 999999999 8999999 8899999998865 689999999999999998752 33433 4599999999994211
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
. .-+...+++|.++|..|
T Consensus 323 ~---------------~~~g~~VlVIgATnRPD----------------------------------------------- 340 (802)
T KOG0733|consen 323 E---------------KTKGDPVLVIGATNRPD----------------------------------------------- 340 (802)
T ss_pred c---------------ccCCCCeEEEecCCCCc-----------------------------------------------
Confidence 0 01223477777766433
Q ss_pred HHcCCCccc--ccccceEEEcCCCCHHHHHHHHhchH
Q 005667 519 IAYGLIPEF--VGRFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 519 ~~~~f~PeL--l~R~d~iI~f~pLs~eel~~Il~~~l 553 (684)
.+.|.| .+|||.-|.+.-+++....+||+..+
T Consensus 341 ---slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 341 ---SLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred ---ccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 012333 27999999999999999999998643
No 43
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-17 Score=188.73 Aligned_cols=220 Identities=25% Similarity=0.332 Sum_probs=164.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
+.|.+.+|+.+.+++...+++.....+ . + ..++.++||+||||||||++|+++|..++.+|
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~----~---~------------~~~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRK----L---G------------LRPPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHh----c---C------------CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 678999999999999876665332111 0 0 11247999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++.+++. ++|+|+. ++.++.+|..+. ...++||||||||++...|+.. .+.+.+++.++||..|+|-.
T Consensus 305 i~v~~~~l~-sk~vGes-ek~ir~~F~~A~----~~~p~iiFiDEiDs~~~~r~~~---~~~~~~r~~~~lL~~~d~~e- 374 (494)
T COG0464 305 ISVKGSELL-SKWVGES-EKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPS---EDGSGRRVVGQLLTELDGIE- 374 (494)
T ss_pred EEeeCHHHh-ccccchH-HHHHHHHHHHHH----cCCCcEEEEEchhhhhccCCCC---CchHHHHHHHHHHHHhcCCC-
Confidence 999999888 7899998 899999999876 3688999999999999986542 22233569999999998421
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
..+++++|.++|..+
T Consensus 375 ------------------~~~~v~vi~aTN~p~----------------------------------------------- 389 (494)
T COG0464 375 ------------------KAEGVLVIAATNRPD----------------------------------------------- 389 (494)
T ss_pred ------------------ccCceEEEecCCCcc-----------------------------------------------
Confidence 234466777776432
Q ss_pred HHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcce-ecCHHHHHHHHHhcCCCCCChHHH
Q 005667 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 ~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l-~i~eeAl~~La~~ay~~~~GAR~L 595 (684)
.+.|+++. |||.++.+++++.++..+|++..+... .. ..++-.++.+++ ...++-...+
T Consensus 390 ---~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~-------------~~~~~~~~~~~~l~~--~t~~~sgadi 451 (494)
T COG0464 390 ---DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK-------------KPPLAEDVDLEELAE--ITEGYSGADI 451 (494)
T ss_pred ---ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc-------------CCcchhhhhHHHHHH--HhcCCCHHHH
Confidence 13345555 999999999999999999998743211 11 133455666666 3445666889
Q ss_pred HHHHHHHHHHHHhcC
Q 005667 596 RSLLENILMDAMYEI 610 (684)
Q Consensus 596 r~iIe~~l~~al~e~ 610 (684)
..+++.....++.+.
T Consensus 452 ~~i~~ea~~~~~~~~ 466 (494)
T COG0464 452 AALVREAALEALREA 466 (494)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888887764
No 44
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.76 E-value=1.2e-17 Score=197.08 Aligned_cols=221 Identities=22% Similarity=0.306 Sum_probs=162.2
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|++.+|+.|.+.+..+++......+ .+ ..++.++||+||||||||++|+++|+.++.+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~----~g---------------~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEK----MG---------------IRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHh----cC---------------CCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3799999999999998754442111100 00 0124789999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|++ +..++.+|..+. ...++||||||||.+.+.++... .....+++.++||..|+|.
T Consensus 515 fi~v~~~~l~-~~~vGes-e~~i~~~f~~A~----~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~- 585 (733)
T TIGR01243 515 FIAVRGPEIL-SKWVGES-EKAIREIFRKAR----QAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGI- 585 (733)
T ss_pred EEEEehHHHh-hcccCcH-HHHHHHHHHHHH----hcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcc-
Confidence 9999999987 6799998 778899988764 35789999999999988764321 1122455889999999851
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...+++++|+|+|..+
T Consensus 586 ------------------~~~~~v~vI~aTn~~~---------------------------------------------- 601 (733)
T TIGR01243 586 ------------------QELSNVVVIAATNRPD---------------------------------------------- 601 (733)
T ss_pred ------------------cCCCCEEEEEeCCChh----------------------------------------------
Confidence 1234688888877432
Q ss_pred HHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC-HHHHHHHHHhcCCCCCChHH
Q 005667 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 l~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~-eeAl~~La~~ay~~~~GAR~ 594 (684)
.+.|.++ +|||.++.++.++.++..+|++.... ...++ +..++.|++. ..++....
T Consensus 602 ----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~---------------~~~~~~~~~l~~la~~--t~g~sgad 660 (733)
T TIGR01243 602 ----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR---------------SMPLAEDVDLEELAEM--TEGYTGAD 660 (733)
T ss_pred ----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc---------------CCCCCccCCHHHHHHH--cCCCCHHH
Confidence 1335555 59999999999999999999874211 12222 2346778874 55677889
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005667 595 LRSLLENILMDAMYEIP 611 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~ 611 (684)
|+++++.+...++.+..
T Consensus 661 i~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 661 IEAVCREAAMAALRESI 677 (733)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999988888877643
No 45
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.76 E-value=8.5e-18 Score=180.74 Aligned_cols=284 Identities=16% Similarity=0.214 Sum_probs=175.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---~ 355 (684)
++|.+.+.+.+.+.+. +.. ....+|||+|++||||+++|++|.... +
T Consensus 8 liG~S~~~~~~~~~i~----~~a--------------------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~ 57 (326)
T PRK11608 8 LLGEANSFLEVLEQVS----RLA--------------------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQ 57 (326)
T ss_pred cEECCHHHHHHHHHHH----HHh--------------------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccC
Confidence 6899999998888775 111 012799999999999999999997665 4
Q ss_pred CCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005667 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.||+.+||..+.+ ..++|...+. +........+.++.+.+|+||||||+.|+.. +|..|+.
T Consensus 58 ~pfv~v~c~~~~~~~~~~~lfg~~~~~-~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~Q~~L~~ 122 (326)
T PRK11608 58 GPFISLNCAALNENLLDSELFGHEAGA-FTGAQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLLR 122 (326)
T ss_pred CCeEEEeCCCCCHHHHHHHHccccccc-cCCcccccCCchhccCCCeEEeCChhhCCHH--------------HHHHHHH
Confidence 6999999998752 1223322110 0000011133456778899999999999998 9999999
Q ss_pred HHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhh
Q 005667 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (684)
+++...+. ..+... .+. .++.+|++++. ++++.+.+
T Consensus 123 ~l~~~~~~-------~~g~~~--~~~-~~~RiI~~s~~-~l~~l~~~--------------------------------- 158 (326)
T PRK11608 123 VIEYGELE-------RVGGSQ--PLQ-VNVRLVCATNA-DLPAMVAE--------------------------------- 158 (326)
T ss_pred HHhcCcEE-------eCCCCc--eee-ccEEEEEeCch-hHHHHHHc---------------------------------
Confidence 99843221 001111 111 24566666552 34333332
Q ss_pred hccchHHHHcCCCcccccccc-eEEEcCCCCH--HHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCC
Q 005667 512 TVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISK 588 (684)
Q Consensus 512 ~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~ 588 (684)
..|.++|+.||. ..|.++||.+ +|+..++..++..+.+++.. .+...+++++++.|.. |+|
T Consensus 159 ---------g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~-----~~~~~~s~~al~~L~~--y~W 222 (326)
T PRK11608 159 ---------GKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGL-----PLFPGFTERARETLLN--YRW 222 (326)
T ss_pred ---------CCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCC-----CCCCCCCHHHHHHHHh--CCC
Confidence 236788889984 4789999976 88988888765554333211 1124699999999999 899
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCccc-CCCcceEEcCCChHHHHHHHHhhhhhhhccccC
Q 005667 589 NTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RGCGAKILYGKGALDRYLAQHKRKDLETNVAGA 667 (684)
Q Consensus 589 ~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~-~g~~~~i~~~~g~l~~~l~~~~~~~~~~~~~~~ 667 (684)
++|+|+|+++|++++..+-....... +-.+........ ..... ....... .....+..++++.|+..|.+.+..+
T Consensus 223 PGNvrEL~~vl~~a~~~~~~~~~~~~--~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~l~~~l~~~Er~~I~~aL~~~ 298 (326)
T PRK11608 223 PGNIRELKNVVERSVYRHGTSEYPLD--NIIIDPFKRRPA-EEAIAVSETTSLP-TLPLDLREWQHQQEKELLQRSLQQA 298 (326)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCchh--hccccccccccc-ccccccccccccc-cccccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998864321111000 000000000000 00000 0000000 0012467778899999999999988
Q ss_pred CCCC
Q 005667 668 DGEP 671 (684)
Q Consensus 668 ~~~~ 671 (684)
+|+.
T Consensus 299 ~gn~ 302 (326)
T PRK11608 299 KFNQ 302 (326)
T ss_pred CCCH
Confidence 8875
No 46
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.75 E-value=5.1e-18 Score=192.76 Aligned_cols=217 Identities=20% Similarity=0.317 Sum_probs=146.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH-----
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY----- 353 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~----- 353 (684)
++|++.+.+.+...+. +.. ....+|||+|++||||+++|++|...
T Consensus 221 iiG~S~~m~~~~~~i~----~~A--------------------------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~ 270 (538)
T PRK15424 221 LLGQSPQMEQVRQTIL----LYA--------------------------RSSAAVLIQGETGTGKELAAQAIHREYFARH 270 (538)
T ss_pred eeeCCHHHHHHHHHHH----HHh--------------------------CCCCcEEEECCCCCCHHHHHHHHHHhhcccc
Confidence 7999999998888875 110 01279999999999999999999877
Q ss_pred ------hCCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchH
Q 005667 354 ------VNVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 354 ------l~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e 423 (684)
.+.||+.+||..+.+ +..+|+..+......-....+.++.+.+|+||||||+.|+..
T Consensus 271 ~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~------------- 337 (538)
T PRK15424 271 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP------------- 337 (538)
T ss_pred cccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHH-------------
Confidence 357999999998753 334554322111110012335677788999999999999998
Q ss_pred HHHHHHHHHHhCcee-eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 424 GVQQALLKMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v-~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
+|..|+++|+...+ ++ | ..+.+.+ ++-+|++++ .+|++.+.++.
T Consensus 338 -~Q~kLl~~L~e~~~~r~---G-----~~~~~~~---dvRiIaat~-~~L~~~v~~g~---------------------- 382 (538)
T PRK15424 338 -LQTRLLRVLEEKEVTRV---G-----GHQPVPV---DVRVISATH-CDLEEDVRQGR---------------------- 382 (538)
T ss_pred -HHHHHHhhhhcCeEEec---C-----CCceecc---ceEEEEecC-CCHHHHHhccc----------------------
Confidence 99999999984433 22 1 1111222 355566554 35665555443
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccce-EEEcCCCCH--HHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHH-
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL- 578 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl- 578 (684)
|+++|+.|+.. .|.++||.+ +|+..++..++.+...++ ...++++++
T Consensus 383 --------------------Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---------~~~~~~~a~~ 433 (538)
T PRK15424 383 --------------------FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL---------SAPFSAALRQ 433 (538)
T ss_pred --------------------chHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc---------CCCCCHHHHH
Confidence 55666667653 467777765 788888887554432221 223666655
Q ss_pred ------HHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 579 ------RLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 579 ------~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+.|.. |+|++|+|+|+++|++++.
T Consensus 434 ~~~~a~~~L~~--y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 434 GLQQCETLLLH--YDWPGNVRELRNLMERLAL 463 (538)
T ss_pred hhHHHHHHHHh--CCCCchHHHHHHHHHHHHH
Confidence 56666 8999999999999999886
No 47
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.75 E-value=2e-17 Score=182.12 Aligned_cols=221 Identities=21% Similarity=0.282 Sum_probs=152.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|.|++.+|+.|.+++..++.+..... ..| . .++.++||+||||||||++|+++|+.++.+|
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~----~~G---l------------~~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYE----QIG---I------------DPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHH----hcC---C------------CCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 89999999999999976554321110 001 0 1348999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+.++++. ..|+|+. ...++.+|..+. ...++||||||||.+...+...+.+.+....++...||..|++..
T Consensus 208 i~i~~s~l~-~k~~ge~-~~~lr~lf~~A~----~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~- 280 (398)
T PTZ00454 208 IRVVGSEFV-QKYLGEG-PRMVRDVFRLAR----ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD- 280 (398)
T ss_pred EEEehHHHH-HHhcchh-HHHHHHHHHHHH----hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC-
Confidence 999998876 5688887 567788877653 357899999999999877643333333333345556666666311
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+++|..+
T Consensus 281 ------------------~~~~v~VI~aTN~~d----------------------------------------------- 295 (398)
T PTZ00454 281 ------------------QTTNVKVIMATNRAD----------------------------------------------- 295 (398)
T ss_pred ------------------CCCCEEEEEecCCch-----------------------------------------------
Confidence 123567777776322
Q ss_pred HHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 ~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.|.++ +|||..|.|+.++.++...|++..+. ..+..- +-.+..++.. ..++..++|+
T Consensus 296 ---~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~-----------~~~l~~---dvd~~~la~~--t~g~sgaDI~ 356 (398)
T PTZ00454 296 ---TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS-----------KMNLSE---EVDLEDFVSR--PEKISAADIA 356 (398)
T ss_pred ---hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh-----------cCCCCc---ccCHHHHHHH--cCCCCHHHHH
Confidence 1335554 59999999999999999988875321 111111 1234556663 5677789999
Q ss_pred HHHHHHHHHHHhc
Q 005667 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
+++..+...++.+
T Consensus 357 ~l~~eA~~~A~r~ 369 (398)
T PTZ00454 357 AICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHHc
Confidence 9999888777654
No 48
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.75 E-value=6.7e-18 Score=192.51 Aligned_cols=221 Identities=20% Similarity=0.312 Sum_probs=152.7
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.++|++.+.+.+.+.+. +.. ....+|||+|++||||+++|++|....
T Consensus 197 ~liG~s~~~~~~~~~~~----~~a--------------------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~ 246 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQAR----VVA--------------------------RSNSTVLLRGESGTGKELIAKAIHYLSPRA 246 (534)
T ss_pred ceEECCHHHHHHHHHHH----HHh--------------------------CcCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 47899998888887775 110 012699999999999999999998875
Q ss_pred CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ ...+|+..+ .+........+.++.+.+|+||||||+.|+.. +|..|+
T Consensus 247 ~~pfv~i~c~~~~~~~~~~~lfg~~~~-~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll 311 (534)
T TIGR01817 247 KRPFVKVNCAALSETLLESELFGHEKG-AFTGAIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLL 311 (534)
T ss_pred CCCeEEeecCCCCHHHHHHHHcCCCCC-ccCCCCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHH
Confidence 56999999988753 112232210 00011111233456678899999999999998 999999
Q ss_pred HHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
++++...+. ..+..+.+. .++.+|++++ .++++.+..
T Consensus 312 ~~l~~~~~~-------~~~~~~~~~---~~~riI~~s~-~~l~~~~~~-------------------------------- 348 (534)
T TIGR01817 312 RVLQEGEFE-------RVGGNRTLK---VDVRLVAATN-RDLEEAVAK-------------------------------- 348 (534)
T ss_pred HHHhcCcEE-------ECCCCceEe---ecEEEEEeCC-CCHHHHHHc--------------------------------
Confidence 999843322 011111122 2355666654 234333322
Q ss_pred hhccchHHHHcCCCcccccccce-EEEcCCCC--HHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCC
Q 005667 511 ETVESSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs--~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~ 587 (684)
..|+++|++|++. .|.++||. .+|+..++..++..+.++ .+..+.+++++++.|.. |+
T Consensus 349 ----------~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~-------~~~~~~~s~~a~~~L~~--~~ 409 (534)
T TIGR01817 349 ----------GEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRE-------NGRPLTITPSAIRVLMS--CK 409 (534)
T ss_pred ----------CCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHH-------cCCCCCCCHHHHHHHHh--CC
Confidence 2478899999965 58899997 589999998766554332 22246899999999999 89
Q ss_pred CCCChHHHHHHHHHHHHH
Q 005667 588 KNTGARGLRSLLENILMD 605 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~ 605 (684)
|++|+|+|+++|++++..
T Consensus 410 WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 410 WPGNVRELENCLERTATL 427 (534)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 999999999999998864
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.75 E-value=9.7e-18 Score=180.28 Aligned_cols=170 Identities=25% Similarity=0.371 Sum_probs=125.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
.+++||||||||||++|+.||+..+..|..+++..-. -+-++..++.+........+.||||||||++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 7999999999999999999999999999999986422 3456667766644444456789999999999998
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcc
Q 005667 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~ 490 (684)
.|+.||..||... +++|.+++-.- .
T Consensus 120 --------------QQD~lLp~vE~G~-----------------------iilIGATTENP--------------s---- 144 (436)
T COG2256 120 --------------QQDALLPHVENGT-----------------------IILIGATTENP--------------S---- 144 (436)
T ss_pred --------------hhhhhhhhhcCCe-----------------------EEEEeccCCCC--------------C----
Confidence 9999999999221 34444433100 0
Q ss_pred cccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcc
Q 005667 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~ 570 (684)
+.+.|.|++|-- |+.|.+|+.+|+.+++++.+....+ ...+..
T Consensus 145 ------------------------------F~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~r------gl~~~~ 187 (436)
T COG2256 145 ------------------------------FELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEER------GLGGQI 187 (436)
T ss_pred ------------------------------eeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhhc------CCCccc
Confidence 124577888866 8899999999999999873322211 112234
Q ss_pred eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+.++++++++|+..+ ++.+|.+-+.+|-+..
T Consensus 188 ~~i~~~a~~~l~~~s---~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 188 IVLDEEALDYLVRLS---NGDARRALNLLELAAL 218 (436)
T ss_pred ccCCHHHHHHHHHhc---CchHHHHHHHHHHHHH
Confidence 668999999999964 6778999998886543
No 50
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.8e-18 Score=171.91 Aligned_cols=178 Identities=25% Similarity=0.400 Sum_probs=138.2
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|-|.++.++.+++.+..+.+...-.. ..| -. .|.++||+||||||||+||+++|....+.
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~----aLG---Ia------------QPKGvlLygppgtGktLlaraVahht~c~ 208 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFE----ALG---IA------------QPKGVLLYGPPGTGKTLLARAVAHHTDCT 208 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHH----hcC---CC------------CCcceEEecCCCCchhHHHHHHHhhcceE
Confidence 478999999999999975554321110 111 11 13799999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh---
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--- 434 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE--- 434 (684)
|++++.+++. ..|+|+. ...++++|-.+.. ..++|||.||||.+...|..++.++|.. +|.++|+++.
T Consensus 209 firvsgselv-qk~igeg-srmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdse---vqrtmlellnqld 279 (404)
T KOG0728|consen 209 FIRVSGSELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSE---VQRTMLELLNQLD 279 (404)
T ss_pred EEEechHHHH-HHHhhhh-HHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHH---HHHHHHHHHHhcc
Confidence 9999999999 6799998 7899999988764 6889999999999999887766666654 7777776665
Q ss_pred CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhcc
Q 005667 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (684)
|. -.++|+-+|+++|..|+
T Consensus 280 gf-------------------eatknikvimatnridi------------------------------------------ 298 (404)
T KOG0728|consen 280 GF-------------------EATKNIKVIMATNRIDI------------------------------------------ 298 (404)
T ss_pred cc-------------------ccccceEEEEecccccc------------------------------------------
Confidence 32 25678889998885442
Q ss_pred chHHHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhch
Q 005667 515 SSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 515 ~~dl~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~ 552 (684)
+.|.|+ +|||.-|.|++++++...+|++-.
T Consensus 299 --------ld~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 299 --------LDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred --------ccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 112222 789999999999999999999753
No 51
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.75 E-value=9.3e-18 Score=190.53 Aligned_cols=218 Identities=19% Similarity=0.340 Sum_probs=151.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---~ 355 (684)
++|++.+.+.+...+. +.. ....+|||.|++||||+++|++|.... +
T Consensus 214 iiG~S~~m~~~~~~i~----~~A--------------------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~ 263 (526)
T TIGR02329 214 LLGASAPMEQVRALVR----LYA--------------------------RSDATVLILGESGTGKELVAQAIHQLSGRRD 263 (526)
T ss_pred eeeCCHHHHHHHHHHH----HHh--------------------------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCC
Confidence 7899999988888774 110 012799999999999999999998765 5
Q ss_pred CCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005667 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.||+.+||..+.+ +.++|+..+...........+.++.+.+|+||||||+.|+.. +|..|++
T Consensus 264 ~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~~Ll~ 329 (526)
T TIGR02329 264 FPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQTRLLR 329 (526)
T ss_pred CCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHH--------------HHHHHHH
Confidence 7999999998753 334554322111110012335567788999999999999998 9999999
Q ss_pred HHhCcee-eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 432 MLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 432 ~LEg~~v-~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
+|+...+ ++ | ..+.+.+ ++-+|++++ .++++.+.++
T Consensus 330 ~L~~~~~~r~---g-----~~~~~~~---dvRiIaat~-~~l~~~v~~g------------------------------- 366 (526)
T TIGR02329 330 VLEEREVVRV---G-----GTEPVPV---DVRVVAATH-CALTTAVQQG------------------------------- 366 (526)
T ss_pred HHhcCcEEec---C-----CCceeee---cceEEeccC-CCHHHHhhhc-------------------------------
Confidence 9984332 21 1 1111222 345555554 3444444333
Q ss_pred hhccchHHHHcCCCcccccccc-eEEEcCCCCH--HHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHH-------
Q 005667 511 ETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRL------- 580 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~------- 580 (684)
.|+++|+.|++ ..|.++||.+ +|+..++..++..+..+ . .+.+++++++.
T Consensus 367 -----------~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~-------~--~~~~~~~a~~~~~~~~~~ 426 (526)
T TIGR02329 367 -----------RFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAA-------L--RLPDSEAAAQVLAGVADP 426 (526)
T ss_pred -----------chhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHH-------c--CCCCCHHHHHHhHHHHHH
Confidence 36677888885 4688888876 88988888765544322 1 34589999888
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHH
Q 005667 581 IAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 581 La~~ay~~~~GAR~Lr~iIe~~l~~ 605 (684)
|.. |+|++|+|+|+++|++++..
T Consensus 427 L~~--y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 427 LQR--YPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHh--CCCCchHHHHHHHHHHHHHh
Confidence 777 89999999999999998865
No 52
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.74 E-value=1e-17 Score=182.78 Aligned_cols=224 Identities=21% Similarity=0.340 Sum_probs=158.7
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.....+||.+..-+.+.+.+.. |. ....+||++|++||||+.+|+.|...
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-~a-----------------------------p~~~~vLi~GetGtGKel~A~~iH~~ 124 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-YA-----------------------------PSGLPVLIIGETGTGKELFARLIHAL 124 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-hC-----------------------------CCCCcEEEecCCCccHHHHHHHHHHh
Confidence 3334579999988888887751 10 01279999999999999999999633
Q ss_pred ----hCCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHH
Q 005667 354 ----VNVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 354 ----l~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~v 425 (684)
...||+.+||+.+.+ +..+|+.. +.++.......+.++.+.+|+||||||+.|++. .
T Consensus 125 s~r~~~~PFI~~NCa~~~en~~~~eLFG~~k-GaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~ 189 (403)
T COG1221 125 SARRAEAPFIAFNCAAYSENLQEAELFGHEK-GAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE--------------G 189 (403)
T ss_pred hhcccCCCEEEEEHHHhCcCHHHHHHhcccc-ceeecccCCcCchheecCCCEEehhhhhhCCHh--------------H
Confidence 367999999998864 44677763 334445566678899999999999999999998 9
Q ss_pred HHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005667 426 QQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 426 q~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~ 504 (684)
|..||++|| |...+| |. . .....++.+||+++ .++++.+..
T Consensus 190 Q~kLl~~le~g~~~rv---G~-----~---~~~~~dVRli~AT~-~~l~~~~~~-------------------------- 231 (403)
T COG1221 190 QEKLLRVLEEGEYRRV---GG-----S---QPRPVDVRLICATT-EDLEEAVLA-------------------------- 231 (403)
T ss_pred HHHHHHHHHcCceEec---CC-----C---CCcCCCceeeeccc-cCHHHHHHh--------------------------
Confidence 999999999 444443 21 1 22334566777665 344433322
Q ss_pred hHhHHhhhccchHHHHcCCCccccc-ccceEEEcCCCCH--HHHHHHHhchHHHHHHHHHHHHhhCCccee-cCHHHHHH
Q 005667 505 VTSSLMETVESSDLIAYGLIPEFVG-RFPVLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLH-FTENALRL 580 (684)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PeLl~-R~d~iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~l~~~gi~l~-i~eeAl~~ 580 (684)
| .+|.. |+..+|.++||.+ +|+..+++.++....++ .+..+. .++++++.
T Consensus 232 -----------------g--~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~-------l~~~~~~~~~~a~~~ 285 (403)
T COG1221 232 -----------------G--ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARR-------LGLPLSVDSPEALRA 285 (403)
T ss_pred -----------------h--cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCCCHHHHHH
Confidence 1 34555 5677889999977 56666666544333222 333443 34699999
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005667 581 IAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 581 La~~ay~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
|.. |+|++|+|+|+++|++++..+-.
T Consensus 286 L~~--y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 286 LLA--YDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHh--CCCCCcHHHHHHHHHHHHHHhcc
Confidence 999 89999999999999999987643
No 53
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.74 E-value=2e-17 Score=192.41 Aligned_cols=216 Identities=17% Similarity=0.278 Sum_probs=149.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---~ 355 (684)
++|.+.+.+.+...+. +.. ....+|||+|++||||+++|++|.+.. +
T Consensus 327 l~g~s~~~~~~~~~~~----~~a--------------------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~ 376 (638)
T PRK11388 327 MPQDSPQMRRLIHFGR----QAA--------------------------KSSFPVLLCGEEGVGKALLAQAIHNESERAA 376 (638)
T ss_pred eEECCHHHHHHHHHHH----HHh--------------------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccC
Confidence 6899988888777664 110 012689999999999999999998876 4
Q ss_pred CCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005667 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.||+.+||..+.+ +.++|+..+. ......+.++.+.+|+||||||+.|+.. +|..|++
T Consensus 377 ~pfv~vnc~~~~~~~~~~elfg~~~~~----~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q~~Ll~ 438 (638)
T PRK11388 377 GPYIAVNCQLYPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQSALLQ 438 (638)
T ss_pred CCeEEEECCCCChHHHHHHhcCCCCcC----ccCCCCCceeECCCCEEEEcChhhCCHH--------------HHHHHHH
Confidence 7999999988752 2234432100 0011123455678899999999999998 9999999
Q ss_pred HHhCce-eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 432 MLEGTV-VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 432 ~LEg~~-v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
+++... .++ +..+.+.+ ++.+|+|++ .++++.+.++
T Consensus 439 ~l~~~~~~~~--------~~~~~~~~---~~riI~~t~-~~l~~~~~~~------------------------------- 475 (638)
T PRK11388 439 VLKTGVITRL--------DSRRLIPV---DVRVIATTT-ADLAMLVEQN------------------------------- 475 (638)
T ss_pred HHhcCcEEeC--------CCCceEEe---eEEEEEecc-CCHHHHHhcC-------------------------------
Confidence 998433 221 11122223 345666655 3455444433
Q ss_pred hhccchHHHHcCCCcccccccce-EEEcCCCCH--HHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCC
Q 005667 511 ETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~ 587 (684)
.|+++|+.||.. .|.++||.+ +|+..++...+..+.+++ +..+.+++++++.|.+ |+
T Consensus 476 -----------~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~~s~~a~~~L~~--y~ 535 (638)
T PRK11388 476 -----------RFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF-------STRLKIDDDALARLVS--YR 535 (638)
T ss_pred -----------CChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh-------CCCCCcCHHHHHHHHc--CC
Confidence 366777777754 477888866 788888887655543322 2245799999999999 89
Q ss_pred CCCChHHHHHHHHHHHHH
Q 005667 588 KNTGARGLRSLLENILMD 605 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~ 605 (684)
|++|+|+|+++|++++..
T Consensus 536 WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 536 WPGNDFELRSVIENLALS 553 (638)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 999999999999997754
No 54
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.74 E-value=3.5e-17 Score=179.99 Aligned_cols=222 Identities=24% Similarity=0.338 Sum_probs=150.8
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|.+.+++.|.+++..++.+..... ..| . .++.++||+||||||||++|+++|+.++.+
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~----~~g---~------------~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFE----EVG---I------------EPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHH----hcC---C------------CCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 479999999999999875544321110 001 0 124799999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+...+.+.+ ..++..|++++..-
T Consensus 193 ~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~---~~~~~~l~~lL~~l- 262 (389)
T PRK03992 193 FIRVVGSELV-QKFIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAEM- 262 (389)
T ss_pred EEEeehHHHh-Hhhccch-HHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCcc---HHHHHHHHHHHHhc-
Confidence 9999999987 5688887 6677888876542 46799999999999876544322222 22555555555310
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
++ .....++.+|+|+|..+
T Consensus 263 -----d~----------~~~~~~v~VI~aTn~~~---------------------------------------------- 281 (389)
T PRK03992 263 -----DG----------FDPRGNVKIIAATNRID---------------------------------------------- 281 (389)
T ss_pred -----cc----------cCCCCCEEEEEecCChh----------------------------------------------
Confidence 00 01123577788777321
Q ss_pred HHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHH
Q 005667 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 l~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~L 595 (684)
.+.|.++ +|||..|.|++++.++..+|++..+.. . .+. .+..+..|++. ..++..+.|
T Consensus 282 ----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~-----------~--~~~-~~~~~~~la~~--t~g~sgadl 341 (389)
T PRK03992 282 ----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK-----------M--NLA-DDVDLEELAEL--TEGASGADL 341 (389)
T ss_pred ----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc-----------C--CCC-CcCCHHHHHHH--cCCCCHHHH
Confidence 1234454 599999999999999999999753211 1 111 11235667773 567778999
Q ss_pred HHHHHHHHHHHHhc
Q 005667 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
+.++..+...++.+
T Consensus 342 ~~l~~eA~~~a~~~ 355 (389)
T PRK03992 342 KAICTEAGMFAIRD 355 (389)
T ss_pred HHHHHHHHHHHHHc
Confidence 99998887777654
No 55
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.5e-17 Score=186.77 Aligned_cols=177 Identities=27% Similarity=0.375 Sum_probs=138.2
Q ss_pred ccChHHHHHHHHHHHHhhHH--hHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 279 VIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~--ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
|.|.++||+.+.+.|. ..+ ..++.. | - .-|.++||+||||||||+||+++|.+.++
T Consensus 152 VAG~dEakeel~EiVd-fLk~p~ky~~l------G--------------a-kiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 152 VAGVDEAKEELSELVD-FLKNPKKYQAL------G--------------A-KIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hcCcHHHHHHHHHHHH-HHhCchhhHhc------c--------------c-ccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 8999999999999885 111 001111 1 1 22489999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
||+.++.+++.+ -|+|.. ...++++|..+.. +.+|||||||||.+.+.|+.+-+++++.+|+.+++||..|||.
T Consensus 210 PFf~iSGS~FVe-mfVGvG-AsRVRdLF~qAkk----~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 210 PFFSISGSDFVE-MFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred Cceeccchhhhh-hhcCCC-cHHHHHHHHHhhc----cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 999999999995 489988 7899999998763 5789999999999999998777788888999999999999963
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCccc-HHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccc
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~d-Le~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
. ..+.+++|.++|..| ||.++
T Consensus 284 ~-------------------~~~gviviaaTNRpdVlD~AL--------------------------------------- 305 (596)
T COG0465 284 G-------------------GNEGVIVIAATNRPDVLDPAL--------------------------------------- 305 (596)
T ss_pred C-------------------CCCceEEEecCCCcccchHhh---------------------------------------
Confidence 2 113366666666433 11111
Q ss_pred hHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhc
Q 005667 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 516 ~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
++| +|||..|.++.++....++|++.
T Consensus 306 -------lRp---gRFDRqI~V~~PDi~gRe~Ilkv 331 (596)
T COG0465 306 -------LRP---GRFDRQILVELPDIKGREQILKV 331 (596)
T ss_pred -------cCC---CCcceeeecCCcchhhHHHHHHH
Confidence 223 79999999999999999999884
No 56
>CHL00176 ftsH cell division protein; Validated
Probab=99.74 E-value=4.1e-17 Score=188.76 Aligned_cols=218 Identities=24% Similarity=0.330 Sum_probs=151.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|.+++|+.+.+.+.. ++..... + .. +. ..+.++||+||||||||++|+++|..++.||
T Consensus 185 v~G~~~~k~~l~eiv~~-lk~~~~~-~---~~---g~------------~~p~gVLL~GPpGTGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSF-LKKPERF-T---AV---GA------------KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred ccChHHHHHHHHHHHHH-HhCHHHH-h---hc---cC------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 79999999999988741 2211100 0 00 00 1247899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..+.|.. ...++.+|..+.. ..++||||||||.+...|+.+..+.+...+.+++.||..|||..
T Consensus 245 i~is~s~f~-~~~~g~~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~- 317 (638)
T CHL00176 245 FSISGSEFV-EMFVGVG-AARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK- 317 (638)
T ss_pred eeccHHHHH-HHhhhhh-HHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-
Confidence 999999886 3466665 4567777776542 57899999999999887655433444455668888888887421
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+++|..+.
T Consensus 318 ------------------~~~~ViVIaaTN~~~~---------------------------------------------- 333 (638)
T CHL00176 318 ------------------GNKGVIVIAATNRVDI---------------------------------------------- 333 (638)
T ss_pred ------------------CCCCeeEEEecCchHh----------------------------------------------
Confidence 1235777777764220
Q ss_pred HHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 ~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
+.|.++ +|||..+.+..++.++..+|++..+.. ....++..+..+++. ..++..++|+
T Consensus 334 ----LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--------------~~~~~d~~l~~lA~~--t~G~sgaDL~ 393 (638)
T CHL00176 334 ----LDAALLRPGRFDRQITVSLPDREGRLDILKVHARN--------------KKLSPDVSLELIARR--TPGFSGADLA 393 (638)
T ss_pred ----hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh--------------cccchhHHHHHHHhc--CCCCCHHHHH
Confidence 113333 589999999999999999999864322 111234566777763 4556778899
Q ss_pred HHHHHHHHHHH
Q 005667 597 SLLENILMDAM 607 (684)
Q Consensus 597 ~iIe~~l~~al 607 (684)
+++++....+.
T Consensus 394 ~lvneAal~a~ 404 (638)
T CHL00176 394 NLLNEAAILTA 404 (638)
T ss_pred HHHHHHHHHHH
Confidence 88887765543
No 57
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.6e-17 Score=185.34 Aligned_cols=220 Identities=29% Similarity=0.395 Sum_probs=160.3
Q ss_pred ccChHHHHHHHHHHHHhhHH--hHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 279 VIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~--ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
|.|..++|+.|.+.+..+.+ .++....-|. +.++||+||||||||+||-++|..++.
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~---------------------~~giLLyGppGcGKT~la~a~a~~~~~ 727 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL---------------------RTGILLYGPPGCGKTLLASAIASNSNL 727 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCccc---------------------ccceEEECCCCCcHHHHHHHHHhhCCe
Confidence 78999999999999985433 4444432211 279999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
.|+.+.+.++. ++|+|.+ +..++.+|.++. .+.+||||+||+|.+.++|+.. +..+++ ++.++||..|||.
T Consensus 728 ~fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~----~a~PCiLFFDEfdSiAPkRGhD--sTGVTD-RVVNQlLTelDG~ 798 (952)
T KOG0735|consen 728 RFISVKGPELL-SKYIGAS-EQNVRDLFERAQ----SAKPCILFFDEFDSIAPKRGHD--STGVTD-RVVNQLLTELDGA 798 (952)
T ss_pred eEEEecCHHHH-HHHhccc-HHHHHHHHHHhh----ccCCeEEEeccccccCcccCCC--CCCchH-HHHHHHHHhhccc
Confidence 99999999998 7899999 889999999876 4799999999999999997642 333333 4999999999963
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccch
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
.. ...+.++.+++..||
T Consensus 799 Eg-------------------l~GV~i~aaTsRpdl-------------------------------------------- 815 (952)
T KOG0735|consen 799 EG-------------------LDGVYILAATSRPDL-------------------------------------------- 815 (952)
T ss_pred cc-------------------cceEEEEEecCCccc--------------------------------------------
Confidence 32 122333333332221
Q ss_pred HHHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHH
Q 005667 517 DLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 517 dl~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~ 594 (684)
+.|.|+ +|+|..|.-+.+++.+..+|++...+.+ ..-++..++.++.+ ..++..-.
T Consensus 816 ------iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~--------------~~~~~vdl~~~a~~--T~g~tgAD 873 (952)
T KOG0735|consen 816 ------IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL--------------LKDTDVDLECLAQK--TDGFTGAD 873 (952)
T ss_pred ------cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc--------------CCccccchHHHhhh--cCCCchhh
Confidence 112222 7999999999999999999988532211 12245567788885 44555568
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 005667 595 LRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~~~ 613 (684)
|+.++-++-+.++.++..+
T Consensus 874 lq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 874 LQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888887766666655443
No 58
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.73 E-value=2.6e-17 Score=187.24 Aligned_cols=272 Identities=15% Similarity=0.217 Sum_probs=169.5
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.++|.+.+.+.+...+. +.. ....+|||+|++||||+++|+++....
T Consensus 205 ~~ig~s~~~~~~~~~~~----~~A--------------------------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~ 254 (520)
T PRK10820 205 QIVAVSPKMRQVVEQAR----KLA--------------------------MLDAPLLITGDTGTGKDLLAYACHLRSPRG 254 (520)
T ss_pred ceeECCHHHHHHHHHHH----HHh--------------------------CCCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 36899988887776664 110 012689999999999999999997665
Q ss_pred CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
..||+.+||+.+.+ ...+|+..+.. ........+.++.+.+|+||||||+.|+.. +|..|+
T Consensus 255 ~~pfv~inca~~~~~~~e~elFG~~~~~~-~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~--------------~Q~~Ll 319 (520)
T PRK10820 255 KKPFLALNCASIPDDVVESELFGHAPGAY-PNALEGKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLL 319 (520)
T ss_pred CCCeEEeccccCCHHHHHHHhcCCCCCCc-CCcccCCCChhhhcCCCEEEEeChhhCCHH--------------HHHHHH
Confidence 46999999988753 12233321110 001112234566778899999999999998 999999
Q ss_pred HHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
++++...++ +.+...... .++-+|++++ .++++.+.++
T Consensus 320 ~~l~~~~~~-------~~g~~~~~~---~~vRiI~st~-~~l~~l~~~g------------------------------- 357 (520)
T PRK10820 320 RFLNDGTFR-------RVGEDHEVH---VDVRVICATQ-KNLVELVQKG------------------------------- 357 (520)
T ss_pred HHHhcCCcc-------cCCCCccee---eeeEEEEecC-CCHHHHHHcC-------------------------------
Confidence 999833221 111111112 2455666654 3444444333
Q ss_pred hhccchHHHHcCCCcccccccc-eEEEcCCCCH--HHHHHHHhchHHHHHHHHHHHHhhCCc-ceecCHHHHHHHHHhcC
Q 005667 511 ETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGV-KLHFTENALRLIAKKAI 586 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~l~~~gi-~l~i~eeAl~~La~~ay 586 (684)
.|.++|+.|+. ..|.++||.+ +|+..++..++..+.++ .+. ...+++++++.|.. |
T Consensus 358 -----------~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~-------~g~~~~~ls~~a~~~L~~--y 417 (520)
T PRK10820 358 -----------EFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADE-------QGVPRPKLAADLNTVLTR--Y 417 (520)
T ss_pred -----------CccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHH-------cCCCCCCcCHHHHHHHhc--C
Confidence 36677888876 4588888876 68888887755544332 222 34799999999998 8
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcccCCCcceEEcCCChHHHHHHHHhhhhhhhcccc
Q 005667 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKDLETNVAG 666 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~~g~~~~i~~~~g~l~~~l~~~~~~~~~~~~~~ 666 (684)
+|++|+|+|+++|++++..+-....... ++. +.+. ......+ . ....+.|+..+++.|+..++..+..
T Consensus 418 ~WPGNvreL~nvl~~a~~~~~~~~i~~~----~~~--l~~~--~~~~~~~-~---~~~~~~L~~~~~~~E~~~i~~~l~~ 485 (520)
T PRK10820 418 GWPGNVRQLKNAIYRALTQLEGYELRPQ----DIL--LPDY--DAAVAVG-E---DAMEGSLDEITSRFERSVLTRLYRN 485 (520)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCcccHH----HcC--Cccc--ccccccc-c---ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998864311111110 100 0000 0000000 0 0123468888899999888876554
Q ss_pred CC
Q 005667 667 AD 668 (684)
Q Consensus 667 ~~ 668 (684)
..
T Consensus 486 ~~ 487 (520)
T PRK10820 486 YP 487 (520)
T ss_pred CC
Confidence 43
No 59
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.73 E-value=8.3e-17 Score=181.38 Aligned_cols=183 Identities=23% Similarity=0.303 Sum_probs=130.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|.|++.+++.+..+|..++.+...... .+ ..++.++||+||||||||++|+++|+.++.+
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~----~g---------------l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i 244 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYRE----YD---------------LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRI 244 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHh----cc---------------CCCCcceEEECCCCCcHHHHHHHHHHhhcccc
Confidence 789999999999999755443211100 00 0124799999999999999999999998644
Q ss_pred ---------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHH
Q 005667 358 ---------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 358 ---------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~ 428 (684)
|+.+..+++. ..|+|+. +..++.+|..+........++||||||||.+...|+.+ .+++. ...+.++
T Consensus 245 ~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~-~s~d~-e~~il~~ 320 (512)
T TIGR03689 245 GAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG-VSSDV-ETTVVPQ 320 (512)
T ss_pred ccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC-ccchH-HHHHHHH
Confidence 5556666665 5688887 67778888765443333468999999999998876432 22222 2347789
Q ss_pred HHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhH
Q 005667 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ 508 (684)
||..|+|- -...++++|+|+|..+
T Consensus 321 LL~~LDgl-------------------~~~~~ViVI~ATN~~d------------------------------------- 344 (512)
T TIGR03689 321 LLSELDGV-------------------ESLDNVIVIGASNRED------------------------------------- 344 (512)
T ss_pred HHHHhccc-------------------ccCCceEEEeccCChh-------------------------------------
Confidence 99999841 1234678888877432
Q ss_pred HhhhccchHHHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchH
Q 005667 509 LMETVESSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 509 ll~~v~~~dl~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l 553 (684)
.+.|.++. |||..|.|+.++.++..+|++..+
T Consensus 345 -------------~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 345 -------------MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred -------------hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 14466764 999999999999999999998754
No 60
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.72 E-value=8.3e-17 Score=173.08 Aligned_cols=177 Identities=12% Similarity=0.193 Sum_probs=128.1
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhh-HhhcCCEEEEcccccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEVDKI 407 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v-~~a~~gVLfIDEIDkL 407 (684)
+|..++|+||||||||++|+++|+.++.+|+.+++.++. ++|+|+. ++.++++|..+.... .+.++|||||||||.+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 358999999999999999999999999999999999998 7899998 899999998875422 2457899999999999
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCc-eeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCC
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~-~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IG 486 (684)
.+.++. .++.+..+.+..+||.+||+- .+.+ .|..+. .-....+++|+|+|-.+
T Consensus 225 ~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l--~G~w~~------~~~~~~V~VIaTTNrpd--------------- 279 (413)
T PLN00020 225 AGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSL--GGDWRE------KEEIPRVPIIVTGNDFS--------------- 279 (413)
T ss_pred CCCCCC--CCcchHHHHHHHHHHHHhcCCccccc--cccccc------cccCCCceEEEeCCCcc---------------
Confidence 988652 344444555668999999841 1111 111000 11234577888887332
Q ss_pred cCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHH
Q 005667 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l 564 (684)
.+.|+|+. |||..+ ..++.++..+|++..+
T Consensus 280 -----------------------------------~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~----------- 311 (413)
T PLN00020 280 -----------------------------------TLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIF----------- 311 (413)
T ss_pred -----------------------------------cCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHh-----------
Confidence 14577776 999865 3688999999988521
Q ss_pred hhCCcceecCHHHHHHHHHh
Q 005667 565 QMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 565 ~~~gi~l~i~eeAl~~La~~ 584 (684)
+ +..++.+.+..|++.
T Consensus 312 r----~~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 312 R----DDGVSREDVVKLVDT 327 (413)
T ss_pred c----cCCCCHHHHHHHHHc
Confidence 1 234566777777775
No 61
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.72 E-value=1.1e-16 Score=178.02 Aligned_cols=221 Identities=21% Similarity=0.295 Sum_probs=147.8
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|++.+++.+.+++..+..+..... .. + + .++.++||+||||||||++|+++|+.++.+
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~----~~---g-----------i-~~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYD----DI---G-----------I-KPPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHH----hc---C-----------C-CCCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 379999999999999974433211000 00 0 0 134799999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+.++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+.....+.+....++...||..|+|..
T Consensus 245 fi~V~~seL~-~k~~Ge~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 245 FLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred EEEEecchhh-hhhcchH-HHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 9999999887 4588887 5677888876543 46899999999999876543222222222223344555555310
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++.+|+++|..+
T Consensus 319 -------------------~~~~V~VI~ATNr~d---------------------------------------------- 333 (438)
T PTZ00361 319 -------------------SRGDVKVIMATNRIE---------------------------------------------- 333 (438)
T ss_pred -------------------ccCCeEEEEecCChH----------------------------------------------
Confidence 123567777766321
Q ss_pred HHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHH-HHHHHHHhcCCCCCChHH
Q 005667 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 l~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ee-Al~~La~~ay~~~~GAR~ 594 (684)
.+.|.++ +|||..|.|+.++.++..+|++..+. ++.++++ -++.++. ...++.+..
T Consensus 334 ----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~---------------k~~l~~dvdl~~la~--~t~g~sgAd 392 (438)
T PTZ00361 334 ----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS---------------KMTLAEDVDLEEFIM--AKDELSGAD 392 (438)
T ss_pred ----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh---------------cCCCCcCcCHHHHHH--hcCCCCHHH
Confidence 0224444 69999999999999999999985321 1222222 3455555 345667788
Q ss_pred HHHHHHHHHHHHHhc
Q 005667 595 LRSLLENILMDAMYE 609 (684)
Q Consensus 595 Lr~iIe~~l~~al~e 609 (684)
|+.++..+...|+.+
T Consensus 393 I~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 393 IKAICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999888877766644
No 62
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-16 Score=163.12 Aligned_cols=146 Identities=23% Similarity=0.370 Sum_probs=111.0
Q ss_pred ccChHHHHHHHHHHHHhhHHh--HhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 279 VIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~r--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
|-|.+-.|+.++++|..++-. ++.... --||+++|++||||||||+||+++|+....
T Consensus 157 iggld~qkqeireavelplt~~~ly~qig---------------------idpprgvllygppg~gktml~kava~~t~a 215 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIG---------------------IDPPRGVLLYGPPGTGKTMLAKAVANHTTA 215 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhC---------------------CCCCcceEEeCCCCCcHHHHHHHHhhccch
Confidence 789999999999999754432 121111 024699999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
.|+++..+++. .+|.|++ -..+++.|+.+.. +.++||||||||.+...|-....+.|..-++++-.||..|||.
T Consensus 216 ~firvvgsefv-qkylgeg-prmvrdvfrlake----napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgf 289 (408)
T KOG0727|consen 216 AFIRVVGSEFV-QKYLGEG-PRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGF 289 (408)
T ss_pred heeeeccHHHH-HHHhccC-cHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCc
Confidence 99999999999 6799998 6889999988764 5889999999999999887666566644334444445555542
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCcc
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~ 470 (684)
- .+.|+-+||++|..
T Consensus 290 d-------------------q~~nvkvimatnra 304 (408)
T KOG0727|consen 290 D-------------------QTTNVKVIMATNRA 304 (408)
T ss_pred C-------------------cccceEEEEecCcc
Confidence 1 24577788887744
No 63
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.68 E-value=2.1e-16 Score=175.60 Aligned_cols=248 Identities=18% Similarity=0.327 Sum_probs=158.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++++.|++||||+++|+++.... ..||+.++|..+.+ ..++|+..+ .+........+.++.+.+|+|||||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~-~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKG-AFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCC-CcCCCccCCCCceeECCCCEEEEec
Confidence 689999999999999999998776 46899999988742 112222110 0000011123345667889999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.|+.. +|..|+++++...+.- .| .... ...++-+|++++ .++++.+.++
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~~--~~-----~~~~---~~~~~rii~~~~-~~l~~~~~~~---- 292 (445)
T TIGR02915 242 IGDLPLN--------------LQAKLLRFLQERVIER--LG-----GREE---IPVDVRIVCATN-QDLKRMIAEG---- 292 (445)
T ss_pred hhhCCHH--------------HHHHHHHHHhhCeEEe--CC-----CCce---eeeceEEEEecC-CCHHHHHHcC----
Confidence 9999998 9999999998433220 11 1111 123456666655 2444444333
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc-eEEEcCCCCH--HHHHHHHhchHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|.++|+.|+. ..|.++||.+ +|+..++..++.++..+|
T Consensus 293 --------------------------------------~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~ 334 (445)
T TIGR02915 293 --------------------------------------TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFAREL 334 (445)
T ss_pred --------------------------------------CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHh
Confidence 35667777775 3477777755 788888887655554332
Q ss_pred HHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCccc-CCCcc
Q 005667 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RGCGA 639 (684)
Q Consensus 561 ~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~-~g~~~ 639 (684)
.+ ....+++++++.|.. |+|++|+|+|+++|++++..+-.. .|+.+.+.... .....
T Consensus 335 ~~------~~~~~~~~a~~~L~~--~~wpgNvreL~~~i~~a~~~~~~~--------------~i~~~~l~~~~~~~~~~ 392 (445)
T TIGR02915 335 KR------KTKGFTDDALRALEA--HAWPGNVRELENKVKRAVIMAEGN--------------QITAEDLGLDARERAET 392 (445)
T ss_pred CC------CCCCCCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhCCCC--------------cccHHHcCCcccccccc
Confidence 11 135699999999999 899999999999999988643211 11122211000 00000
Q ss_pred eEEcCCChHHHHHHHHhhhhhhhccccCCCCC
Q 005667 640 KILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 640 ~i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
. ....+..++++.|+..|...+..++|+.
T Consensus 393 ~---~~~~l~~~~~~~E~~~i~~al~~~~gn~ 421 (445)
T TIGR02915 393 P---LEVNLREVRERAEREAVRKAIARVDGNI 421 (445)
T ss_pred c---cccCHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 0 0124666788899999999999888875
No 64
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.68 E-value=2.7e-16 Score=175.95 Aligned_cols=199 Identities=19% Similarity=0.311 Sum_probs=135.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++++.|++|||||++|+++.... +.||+.++|..+.+ ...+|+..+. .........+.++.+.+|+|||||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~-~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGA-FTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCC-CCCCCcCCCCCeeECCCCEEEEec
Confidence 689999999999999999998876 46999999988742 1122222110 000000112345567789999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.|+.. +|..|+++++...+.- .| ....+. .++-+|+|++. ++++.+.++
T Consensus 241 i~~l~~~--------------~q~~L~~~l~~~~~~~--~~-----~~~~~~---~~~rii~~~~~-~l~~~~~~~---- 291 (469)
T PRK10923 241 IGDMPLD--------------VQTRLLRVLADGQFYR--VG-----GYAPVK---VDVRIIAATHQ-NLEQRVQEG---- 291 (469)
T ss_pred cccCCHH--------------HHHHHHHHHhcCcEEe--CC-----CCCeEE---eeEEEEEeCCC-CHHHHHHcC----
Confidence 9999998 9999999998332210 01 111112 34666666652 444433322
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc-eEEEcCCCCH--HHHHHHHhchHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|.++|+.|+. ..|.++||.+ +|+..++..++..+..+
T Consensus 292 --------------------------------------~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~- 332 (469)
T PRK10923 292 --------------------------------------KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARE- 332 (469)
T ss_pred --------------------------------------CchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHH-
Confidence 36788888884 5688888866 78888888765544332
Q ss_pred HHHHhhCCcc-eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005667 561 RKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 561 ~~~l~~~gi~-l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~a 606 (684)
.+.. ..+++++++.|.. |+|++|+|+|+++|++++..+
T Consensus 333 ------~~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 333 ------LGVEAKLLHPETEAALTR--LAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred ------cCCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhC
Confidence 2223 3699999999999 899999999999999988654
No 65
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.68 E-value=1.9e-16 Score=185.63 Aligned_cols=221 Identities=19% Similarity=0.311 Sum_probs=148.3
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.++|++.+++.+.+.+. +.. ....+|||+|++|||||++|++|....
T Consensus 377 ~liG~S~~~~~~~~~~~----~~a--------------------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~ 426 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVE----MVA--------------------------QSDSTVLILGETGTGKELIARAIHNLSGRN 426 (686)
T ss_pred ceeecCHHHHHHHHHHH----HHh--------------------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 37888888888777664 110 012699999999999999999998765
Q ss_pred CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.++|..+.+ ..++|...+. +........+.++.+.+|+||||||+.++.. +|..|+
T Consensus 427 ~~~~v~i~c~~~~~~~~~~~lfg~~~~~-~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~ 491 (686)
T PRK15429 427 NRRMVKMNCAAMPAGLLESDLFGHERGA-FTGASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLL 491 (686)
T ss_pred CCCeEEEecccCChhHhhhhhcCccccc-ccccccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHH
Confidence 56999999987642 2233332111 0000001123345677899999999999998 999999
Q ss_pred HHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
++|+...+.- .|. ... -..++-+|++++ .++++.+..+
T Consensus 492 ~~l~~~~~~~--~g~-----~~~---~~~~~RiI~~t~-~~l~~~~~~~------------------------------- 529 (686)
T PRK15429 492 RVLQEQEFER--LGS-----NKI---IQTDVRLIAATN-RDLKKMVADR------------------------------- 529 (686)
T ss_pred HHHHhCCEEe--CCC-----CCc---ccceEEEEEeCC-CCHHHHHHcC-------------------------------
Confidence 9998433210 111 111 123455666654 3444444332
Q ss_pred hhccchHHHHcCCCcccccccce-EEEcCCCCH--HHHHHHHhchHHHHHHHHHHHHhhCCcce-ecCHHHHHHHHHhcC
Q 005667 511 ETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRLIAKKAI 586 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~l~~~gi~l-~i~eeAl~~La~~ay 586 (684)
.|.++|+.|+.. .|.++||.+ +|+..++..++..+.+++ +..+ .+++++++.|.. |
T Consensus 530 -----------~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~~~s~~al~~L~~--y 589 (686)
T PRK15429 530 -----------EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM-------GRNIDSIPAETLRTLSN--M 589 (686)
T ss_pred -----------cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc-------CCCCCCcCHHHHHHHHh--C
Confidence 366778888765 478888865 788888877555543332 2233 599999999999 8
Q ss_pred CCCCChHHHHHHHHHHHHH
Q 005667 587 SKNTGARGLRSLLENILMD 605 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~ 605 (684)
+|++|+|+|+++|++++..
T Consensus 590 ~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 590 EWPGNVRELENVIERAVLL 608 (686)
T ss_pred CCCCcHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 66
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.9e-16 Score=166.49 Aligned_cols=233 Identities=21% Similarity=0.303 Sum_probs=158.0
Q ss_pred HHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005667 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 270 el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAra 349 (684)
++...+++ |-|.+.+|+++.+.|..+.++.... ...++-.|+.++||+||||||||.+|++
T Consensus 86 ~I~v~f~D-IggLe~v~~~L~e~VilPlr~pelF------------------~~g~Ll~p~kGiLL~GPpG~GKTmlAKA 146 (386)
T KOG0737|consen 86 EIGVSFDD-IGGLEEVKDALQELVILPLRRPELF------------------AKGKLLRPPKGILLYGPPGTGKTMLAKA 146 (386)
T ss_pred hceeehhh-ccchHHHHHHHHHHHhhcccchhhh------------------cccccccCCccceecCCCCchHHHHHHH
Confidence 33334444 6899999999999998666543222 1223344679999999999999999999
Q ss_pred HHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHH
Q 005667 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 350 IA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+|++.+.+|+.++++.++ .+|+|+. ++.+..+|..+. +-+|+||||||||.+...|.+ +.++...-+.++|
T Consensus 147 ~Akeaga~fInv~~s~lt-~KWfgE~-eKlv~AvFslAs----Kl~P~iIFIDEvds~L~~R~s---~dHEa~a~mK~eF 217 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLT-SKWFGEA-QKLVKAVFSLAS----KLQPSIIFIDEVDSFLGQRRS---TDHEATAMMKNEF 217 (386)
T ss_pred HHHHcCCCcceeeccccc-hhhHHHH-HHHHHHHHhhhh----hcCcceeehhhHHHHHhhccc---chHHHHHHHHHHH
Confidence 999999999999999999 5899998 788888887765 358999999999999988732 1122222356666
Q ss_pred HHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCC-cccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhH
Q 005667 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA-FVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 430 L~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn-~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ 508 (684)
....||-. ++.. ..++++.++| ..|||
T Consensus 218 M~~WDGl~---------s~~~--------~rVlVlgATNRP~DlD----------------------------------- 245 (386)
T KOG0737|consen 218 MALWDGLS---------SKDS--------ERVLVLGATNRPFDLD----------------------------------- 245 (386)
T ss_pred HHHhcccc---------CCCC--------ceEEEEeCCCCCccHH-----------------------------------
Confidence 66666422 1111 1133333333 11233
Q ss_pred HhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCC
Q 005667 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISK 588 (684)
Q Consensus 509 ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~ 588 (684)
..++.|++..+.+.-++.++..+|++..+ +...+.-.+ -+..++. ...
T Consensus 246 ----------------eAiiRR~p~rf~V~lP~~~qR~kILkviL-----------k~e~~e~~v---D~~~iA~--~t~ 293 (386)
T KOG0737|consen 246 ----------------EAIIRRLPRRFHVGLPDAEQRRKILKVIL-----------KKEKLEDDV---DLDEIAQ--MTE 293 (386)
T ss_pred ----------------HHHHHhCcceeeeCCCchhhHHHHHHHHh-----------cccccCccc---CHHHHHH--hcC
Confidence 34456777777787788888889988632 222222222 2445566 466
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCc
Q 005667 589 NTGARGLRSLLENILMDAMYEIPDVR 614 (684)
Q Consensus 589 ~~GAR~Lr~iIe~~l~~al~e~~~~~ 614 (684)
++..+.|+++........+.++...+
T Consensus 294 GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 294 GYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 77789999988877777766665543
No 67
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.67 E-value=5.7e-16 Score=164.00 Aligned_cols=240 Identities=18% Similarity=0.253 Sum_probs=160.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++|+.|++||||.++|++..... ..||+.+||..+.+ +..+|+..+ -+...+.++.+.+|.+|+||
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg------~~gk~GffE~AngGTVlLDe 301 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG------DEGKKGFFEQANGGTVLLDE 301 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCC------CCCccchhhhccCCeEEeeh
Confidence 689999999999999999986554 67999999998753 445555433 12344667888999999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcccc
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|..+++. .|.+||+.+. |+.-+| +...-+.+| +-+|||+ -.+|.+.+.++.|+
T Consensus 302 IgEmSp~--------------lQaKLLRFL~DGtFRRV--------Gee~Ev~vd---VRVIcat-q~nL~~lv~~g~fR 355 (511)
T COG3283 302 IGEMSPR--------------LQAKLLRFLNDGTFRRV--------GEDHEVHVD---VRVICAT-QVNLVELVQKGKFR 355 (511)
T ss_pred hhhcCHH--------------HHHHHHHHhcCCceeec--------CCcceEEEE---EEEEecc-cccHHHHHhcCchH
Confidence 9999998 9999999997 444333 223333443 5566665 46899999999888
Q ss_pred CCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHH
Q 005667 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (684)
Q Consensus 483 ~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~ 562 (684)
.++.|+.++-.. -.|+|++|.+. +.-+++.++.++..+
T Consensus 356 eDLfyRLNVLtl----------------------------~~PpLRer~~d-----------i~pL~e~Fv~q~s~e--- 393 (511)
T COG3283 356 EDLFYRLNVLTL----------------------------NLPPLRERPQD-----------IMPLAELFVQQFSDE--- 393 (511)
T ss_pred HHHHHHhheeee----------------------------cCCccccCccc-----------chHHHHHHHHHHHHH---
Confidence 888888776432 23777777553 334444433223222
Q ss_pred HHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcccCCC--cce
Q 005667 563 MFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGC--GAK 640 (684)
Q Consensus 563 ~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~~g~--~~~ 640 (684)
++. ..-+++++.+.+|.+ |.|++|+|+|+|+|-+.+...-.. .++.+.+.-...+. ..-
T Consensus 394 -lg~--p~pkl~~~~~~~L~~--y~WpGNVRqL~N~iyRA~s~~Eg~--------------~l~i~~i~Lp~~~~~~~~~ 454 (511)
T COG3283 394 -LGV--PRPKLAADLLTVLTR--YAWPGNVRQLKNAIYRALTLLEGY--------------ELRIEDILLPDYDAATVVG 454 (511)
T ss_pred -hCC--CCCccCHHHHHHHHH--cCCCccHHHHHHHHHHHHHHhccC--------------ccchhhcccCCcccccccc
Confidence 221 255789999999999 899999999999998876533111 11111111111100 000
Q ss_pred EEcCCChHHHHHHHHhhhhhhhc
Q 005667 641 ILYGKGALDRYLAQHKRKDLETN 663 (684)
Q Consensus 641 i~~~~g~l~~~l~~~~~~~~~~~ 663 (684)
-...+|.|+..++.+|+...+.-
T Consensus 455 ~~~~~gsLdei~~~fE~~VL~rl 477 (511)
T COG3283 455 EDALEGSLDEIVSRFERSVLTRL 477 (511)
T ss_pred hhhccCCHHHHHHHHHHHHHHHH
Confidence 11247889999999998776553
No 68
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.67 E-value=1.3e-15 Score=165.89 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=145.7
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|.+.+++.+.+++..+..+..... ..+ . .++.++||+||||||||++|+++|+.++.+
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~----~~g---~------------~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFE----EVG---I------------EPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHH----hcC---C------------CCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 479999999999999864433211000 000 0 124789999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHH---h
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---E 434 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~L---E 434 (684)
|+.+.++++. ..|+|+. ...++.++..+. ...++||||||+|.+...+.....+.+. .++..|++++ +
T Consensus 184 ~~~v~~~~l~-~~~~g~~-~~~i~~~f~~a~----~~~p~il~iDEiD~l~~~~~~~~~~~~~---~~~~~l~~ll~~ld 254 (364)
T TIGR01242 184 FIRVVGSELV-RKYIGEG-ARLVREIFELAK----EKAPSIIFIDEIDAIAAKRTDSGTSGDR---EVQRTLMQLLAELD 254 (364)
T ss_pred EEecchHHHH-HHhhhHH-HHHHHHHHHHHH----hcCCcEEEhhhhhhhccccccCCCCccH---HHHHHHHHHHHHhh
Confidence 9999888776 4577775 456677766543 2467899999999998765433222232 2444555544 4
Q ss_pred CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhcc
Q 005667 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (684)
+. -...++.+|+|+|..+
T Consensus 255 ~~-------------------~~~~~v~vI~ttn~~~------------------------------------------- 272 (364)
T TIGR01242 255 GF-------------------DPRGNVKVIAATNRPD------------------------------------------- 272 (364)
T ss_pred CC-------------------CCCCCEEEEEecCChh-------------------------------------------
Confidence 21 0123577888877321
Q ss_pred chHHHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH-HHHHHHHHhcCCCCCC
Q 005667 515 SSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTG 591 (684)
Q Consensus 515 ~~dl~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e-eAl~~La~~ay~~~~G 591 (684)
.+.|.++ +||+.++.++.++.++..+|++..+. ...+.+ ..++.|++ ...++.
T Consensus 273 -------~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~---------------~~~l~~~~~~~~la~--~t~g~s 328 (364)
T TIGR01242 273 -------ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTR---------------KMKLAEDVDLEAIAK--MTEGAS 328 (364)
T ss_pred -------hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHh---------------cCCCCccCCHHHHHH--HcCCCC
Confidence 0224444 59999999999999999999875311 111111 23566676 346777
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 005667 592 ARGLRSLLENILMDAMYE 609 (684)
Q Consensus 592 AR~Lr~iIe~~l~~al~e 609 (684)
.+.|+.++..+...++.+
T Consensus 329 g~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 329 GADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999998887777654
No 69
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.67 E-value=8.3e-16 Score=175.29 Aligned_cols=215 Identities=23% Similarity=0.308 Sum_probs=139.0
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---- 354 (684)
++||+.+++.+..++..+ .+.++||+||||||||++|+++++.+
T Consensus 67 iiGqs~~i~~l~~al~~~--------------------------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~ 114 (531)
T TIGR02902 67 IIGQEEGIKALKAALCGP--------------------------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNP 114 (531)
T ss_pred eeCcHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 799999999888665310 12699999999999999999998653
Q ss_pred ------CCCEEEEecccc--cccc----ccccchHHHHH--HH------HhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 355 ------NVPFVIADATTL--TQAG----YVGEDVESILY--KL------LTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 355 ------~~pfv~v~~s~l--~~~g----yvG~~~~~~l~--~l------~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
+.+|+.+||+.. .+.+ .+|........ .. .....+.+..+++|+||||||+.|++.
T Consensus 115 ~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~---- 190 (531)
T TIGR02902 115 ASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV---- 190 (531)
T ss_pred CCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH----
Confidence 358999998742 1111 11110000000 00 111234566778899999999999998
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCe-------E--EeecCceEEEecCCcccHHHHHHhccccCCC
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN-------I--QIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~-------i--~IdtsniIfI~tgn~~dLe~~i~~r~~~~~I 485 (684)
+|+.||++||...+.+. +......+.. + .--..++.+|++++.. +
T Consensus 191 ----------~q~~LL~~Le~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~-p------------- 244 (531)
T TIGR02902 191 ----------QMNKLLKVLEDRKVFLD--SAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRN-P------------- 244 (531)
T ss_pred ----------HHHHHHHHHHhCeeeec--cccccccCcccccchhhhcccCcccceEEEEEecCC-c-------------
Confidence 99999999985544332 1111100000 0 0012234455544311 0
Q ss_pred CcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHh
Q 005667 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 Gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~ 565 (684)
..+.|++++|+. .+.|++|+.+|+.+|++..++..
T Consensus 245 -----------------------------------~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~--------- 279 (531)
T TIGR02902 245 -----------------------------------EEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKI--------- 279 (531)
T ss_pred -----------------------------------ccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHc---------
Confidence 025688889975 67899999999999998743321
Q ss_pred hCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005667 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.+.+++++++.|+. |.| +.|++.++++.+...+..
T Consensus 280 ----~i~is~~al~~I~~--y~~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 280 ----GINLEKHALELIVK--YAS--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred ----CCCcCHHHHHHHHH--hhh--hHHHHHHHHHHHHHHHhh
Confidence 46799999999887 555 579999999988765543
No 70
>PRK15115 response regulator GlrR; Provisional
Probab=99.67 E-value=4e-16 Score=173.30 Aligned_cols=247 Identities=17% Similarity=0.258 Sum_probs=155.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc----cccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~----gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.+++|.|++|||||++|+++.+.. +.||+.++|..+.+. ..+|... +.+........+.++.+.+|+|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~-~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHAR-GAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCc-CCCCCCccCCCCcEEECCCCEEEEEc
Confidence 689999999999999999998775 479999999877421 1112110 00000001122345567789999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
||.|+.. +|..|+++|+...+.- .|. ... ...++.+|+|++. ++++.+.++.
T Consensus 237 i~~l~~~--------------~q~~L~~~l~~~~~~~--~g~-----~~~---~~~~~rii~~~~~-~l~~~~~~~~--- 288 (444)
T PRK15115 237 IGDMPAP--------------LQVKLLRVLQERKVRP--LGS-----NRD---IDIDVRIISATHR-DLPKAMARGE--- 288 (444)
T ss_pred cccCCHH--------------HHHHHHHHHhhCCEEe--CCC-----Cce---eeeeEEEEEeCCC-CHHHHHHcCC---
Confidence 9999998 9999999998332210 111 111 1224667777653 4666655543
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccce-EEEcCCCCH--HHHHHHHhchHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
|.++|+.|+.. .|.++||.+ +|+..++...+..+..++
T Consensus 289 ---------------------------------------f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~ 329 (444)
T PRK15115 289 ---------------------------------------FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERH 329 (444)
T ss_pred ---------------------------------------ccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHh
Confidence 45555566543 356666654 788888887655543322
Q ss_pred HHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcccCCCcce
Q 005667 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAK 640 (684)
Q Consensus 561 ~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~~g~~~~ 640 (684)
.+ ....++++|++.|.. |+|++|.|+|+++|++++..+-.. .|+.+.+.....+ ...
T Consensus 330 ~~------~~~~~~~~a~~~L~~--~~WpgNvreL~~~i~~~~~~~~~~--------------~i~~~~l~~~~~~-~~~ 386 (444)
T PRK15115 330 KP------FVRAFSTDAMKRLMT--ASWPGNVRQLVNVIEQCVALTSSP--------------VISDALVEQALEG-ENT 386 (444)
T ss_pred CC------CCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhCCCC--------------ccChhhhhhhhcc-ccc
Confidence 11 123599999999999 899999999999999987542111 1222222110000 000
Q ss_pred EEcCCChHHHHHHHHhhhhhhhccccCCCCC
Q 005667 641 ILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 641 i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
....+...+++.|+..|...+..++|+.
T Consensus 387 ---~~~~~~~~~~~~E~~~i~~al~~~~gn~ 414 (444)
T PRK15115 387 ---ALPTFVEARNQFELNYLRKLLQITKGNV 414 (444)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 0113455668889999999999888876
No 71
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.65 E-value=7.1e-15 Score=157.95 Aligned_cols=203 Identities=24% Similarity=0.342 Sum_probs=136.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++||+++++.+..++.....+ ..++.++||+||||||||++|+++|+.++..+
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~---------------------------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR---------------------------GEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc---------------------------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 599999999998887521110 01237999999999999999999999999888
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
...+...+... ..+..++... ..++||||||||.+... +++.|+..|++..+
T Consensus 80 ~~~~~~~~~~~--------~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~ 131 (328)
T PRK00080 80 RITSGPALEKP--------GDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRL 131 (328)
T ss_pred EEEecccccCh--------HHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcce
Confidence 77666543311 1222222221 34689999999999876 77778888985433
Q ss_pred eec-CCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 439 NVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 439 ~Vp-~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
.+- .++ ...+.+......+.+|++++..+
T Consensus 132 ~~~l~~~----~~~~~~~~~l~~~~li~at~~~~---------------------------------------------- 161 (328)
T PRK00080 132 DIMIGKG----PAARSIRLDLPPFTLIGATTRAG---------------------------------------------- 161 (328)
T ss_pred eeeeccC----ccccceeecCCCceEEeecCCcc----------------------------------------------
Confidence 220 011 01111222334456666655211
Q ss_pred HHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHH
Q 005667 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 l~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~ 597 (684)
.+.++|++|+..++.|.+++.+++.+|++..... ..+.+++++++.|++.+ .+..|-+.+
T Consensus 162 ----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------------~~~~~~~~~~~~ia~~~---~G~pR~a~~ 221 (328)
T PRK00080 162 ----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------------LGVEIDEEGALEIARRS---RGTPRIANR 221 (328)
T ss_pred ----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------------cCCCcCHHHHHHHHHHc---CCCchHHHH
Confidence 1457788999989999999999999999863322 16779999999999964 344588888
Q ss_pred HHHHHHHHH
Q 005667 598 LLENILMDA 606 (684)
Q Consensus 598 iIe~~l~~a 606 (684)
+++++..-+
T Consensus 222 ~l~~~~~~a 230 (328)
T PRK00080 222 LLRRVRDFA 230 (328)
T ss_pred HHHHHHHHH
Confidence 888755444
No 72
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.65 E-value=7.4e-16 Score=171.45 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=157.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++|+.|++||||+++|+++.... +.||+.++|..+.+ ..++|...+ .+........+.+..+.+|+|||||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~-~~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKG-AFTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCC-CCCCCCCCCCCceEECCCCEEEEec
Confidence 689999999999999999997765 57999999988752 112222110 0000001112345567789999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.|+.. +|..|+.+++...+. ..+....+ ..++.+|++++ .++++.+.++.
T Consensus 246 i~~l~~~--------------~q~~L~~~l~~~~~~-------~~~~~~~~---~~~~rii~~t~-~~l~~~~~~g~--- 297 (457)
T PRK11361 246 IGEMPLV--------------LQAKLLRILQEREFE-------RIGGHQTI---KVDIRIIAATN-RDLQAMVKEGT--- 297 (457)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEE-------eCCCCcee---eeceEEEEeCC-CCHHHHHHcCC---
Confidence 9999998 999999999843321 01111111 22455666665 35555554433
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc-eEEEcCCCCH--HHHHHHHhchHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
|.++|+.|+. ..|.++||.+ +|+..++..++.++..++
T Consensus 298 ---------------------------------------~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~ 338 (457)
T PRK11361 298 ---------------------------------------FREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSEN 338 (457)
T ss_pred ---------------------------------------chHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHc
Confidence 5566666764 3467777763 788877776554443321
Q ss_pred HHHHhhCCc-ceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcccCCCcc
Q 005667 561 RKMFQMNGV-KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGA 639 (684)
Q Consensus 561 ~~~l~~~gi-~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~~g~~~ 639 (684)
+. ...+++++++.|.. |+|++|+|+|+++|++++..+-....... ++...+.. ....+...
T Consensus 339 -------~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~~~~~~~~~~~~~i~~~----~l~~~~~~-----~~~~~~~~ 400 (457)
T PRK11361 339 -------QRDIIDIDPMAMSLLTA--WSWPGNIRELSNVIERAVVMNSGPIIFSE----DLPPQIRQ-----PVCNAGEV 400 (457)
T ss_pred -------CCCCCCcCHHHHHHHHc--CCCCCcHHHHHHHHHHHHHhCCCCcccHH----HChHhhhc-----cccccccc
Confidence 22 35799999999999 89999999999999998864311111100 01100000 00000000
Q ss_pred e-EEcCCChHHHHHHHHhhhhhhhccccCCCCCC
Q 005667 640 K-ILYGKGALDRYLAQHKRKDLETNVAGADGEPE 672 (684)
Q Consensus 640 ~-i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~ 672 (684)
. .......+..++++.|+..|...++.++|+..
T Consensus 401 ~~~~~~~~~l~~~~~~~E~~~i~~al~~~~gn~~ 434 (457)
T PRK11361 401 KTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRT 434 (457)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHhCCCHH
Confidence 0 00011356778899999999999998888753
No 73
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.65 E-value=1.2e-15 Score=170.25 Aligned_cols=200 Identities=18% Similarity=0.282 Sum_probs=136.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++++.|++||||+++|+++.... +.||+.++|..+.+ +..+|+..+. +........+.++.+.+|+|||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGA-FTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCC-CCCcccCCCCcEEECCCCeEEEEc
Confidence 689999999999999999998775 46999999987742 1122322110 001111122335567789999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.|+.. +|..|+++++...+. ..+....+.+ ++-+|++++ .++++.+..+
T Consensus 237 i~~l~~~--------------~q~~ll~~l~~~~~~-------~~~~~~~~~~---~~rii~~~~-~~l~~~~~~~---- 287 (463)
T TIGR01818 237 IGDMPLD--------------AQTRLLRVLADGEFY-------RVGGRTPIKV---DVRIVAATH-QNLEALVRQG---- 287 (463)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEE-------ECCCCceeee---eeEEEEeCC-CCHHHHHHcC----
Confidence 9999988 999999999833221 0011111122 344666654 3444444332
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccce-EEEcCCCC--HHHHHHHHhchHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs--~eel~~Il~~~l~~L~kqy 560 (684)
.|.++|+.|+.. .|.++||. .+|+..++..++..+.+++
T Consensus 288 --------------------------------------~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~ 329 (463)
T TIGR01818 288 --------------------------------------KFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAREL 329 (463)
T ss_pred --------------------------------------CcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHh
Confidence 366788888874 78899998 6899999887665553332
Q ss_pred HHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005667 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 561 ~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~a 606 (684)
. .....+++++++.|.. |+|++|+|+|++++++++..+
T Consensus 330 ~------~~~~~~~~~a~~~L~~--~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 330 D------VEPKLLDPEALERLKQ--LRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred C------CCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhC
Confidence 1 1124699999999999 799999999999999988654
No 74
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.64 E-value=1.5e-14 Score=153.08 Aligned_cols=201 Identities=22% Similarity=0.354 Sum_probs=131.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++||+++++.|..++.....+ . ..+.+++|+||||||||++|+++|+.++.++
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~---------------~------------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMR---------------Q------------EALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhc---------------C------------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 699999999998877421110 0 0136899999999999999999999998887
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
...+++..... .. +...+.. ...+.+|||||||.+... .++.|+.+|++...
T Consensus 59 ~~~~~~~~~~~-------~~-l~~~l~~------~~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~ 110 (305)
T TIGR00635 59 KITSGPALEKP-------GD-LAAILTN------LEEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRL 110 (305)
T ss_pred EEeccchhcCc-------hh-HHHHHHh------cccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhhe
Confidence 66665433211 11 1122211 124579999999999876 78889999984433
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.+--.. ....+........+++|.+++..
T Consensus 111 ~~v~~~---~~~~~~~~~~~~~~~li~~t~~~------------------------------------------------ 139 (305)
T TIGR00635 111 DIVIGK---GPSARSVRLDLPPFTLVGATTRA------------------------------------------------ 139 (305)
T ss_pred eeeecc---CccccceeecCCCeEEEEecCCc------------------------------------------------
Confidence 221000 00011112223334455444311
Q ss_pred HHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005667 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 ~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~i 598 (684)
..+.+++++|+..++.|.+++.+++.+++...+.. ..+.++++++++|++.+ .+.+|.+.++
T Consensus 140 --~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-------------~~~~~~~~al~~ia~~~---~G~pR~~~~l 201 (305)
T TIGR00635 140 --GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-------------LNVEIEPEAALEIARRS---RGTPRIANRL 201 (305)
T ss_pred --cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-------------hCCCcCHHHHHHHHHHh---CCCcchHHHH
Confidence 02457789999989999999999999999863321 15679999999999963 3345777777
Q ss_pred HHHHH
Q 005667 599 LENIL 603 (684)
Q Consensus 599 Ie~~l 603 (684)
++.+.
T Consensus 202 l~~~~ 206 (305)
T TIGR00635 202 LRRVR 206 (305)
T ss_pred HHHHH
Confidence 77654
No 75
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.63 E-value=1.9e-15 Score=185.08 Aligned_cols=190 Identities=18% Similarity=0.254 Sum_probs=130.4
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccc---c------cc-------------------------
Q 005667 328 LEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAG---Y------VG------------------------- 373 (684)
Q Consensus 328 ~p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~g---y------vG------------------------- 373 (684)
.+++++||+||||||||+||+++|..+++||+.++++++.+.. | +|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 4678999999999999999999999999999999999887321 0 11
Q ss_pred ------cchH-HHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCc
Q 005667 374 ------EDVE-SILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGAR 446 (684)
Q Consensus 374 ------~~~~-~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~ 446 (684)
.+++ ..++.+|+.|. +.+||||||||||.+.... +.+..+++||..|+|...
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~-------- 1766 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCE-------- 1766 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccc--------
Confidence 1111 13666777664 3689999999999998651 122257889999984210
Q ss_pred cCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcc
Q 005667 447 KHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPE 526 (684)
Q Consensus 447 ~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~Pe 526 (684)
.-..+++++|+|+|..+ .+.|+
T Consensus 1767 --------~~s~~~VIVIAATNRPD--------------------------------------------------~LDPA 1788 (2281)
T CHL00206 1767 --------RCSTRNILVIASTHIPQ--------------------------------------------------KVDPA 1788 (2281)
T ss_pred --------cCCCCCEEEEEeCCCcc--------------------------------------------------cCCHh
Confidence 01245688888877443 14466
Q ss_pred cc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 527 FV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 527 Ll--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
|+ +|||..|.+..++..+..+++.. + ....++.+.-+..-++.+|. ...++.+++|.+++..++.
T Consensus 1789 LLRPGRFDR~I~Ir~Pd~p~R~kiL~I----L-------l~tkg~~L~~~~vdl~~LA~--~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1789 LIAPNKLNTCIKIRRLLIPQQRKHFFT----L-------SYTRGFHLEKKMFHTNGFGS--ITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred HcCCCCCCeEEEeCCCCchhHHHHHHH----H-------HhhcCCCCCcccccHHHHHH--hCCCCCHHHHHHHHHHHHH
Confidence 66 59999999998887776666542 1 01112222211122566777 4678888999999998888
Q ss_pred HHHhc
Q 005667 605 DAMYE 609 (684)
Q Consensus 605 ~al~e 609 (684)
-++.+
T Consensus 1856 iAirq 1860 (2281)
T CHL00206 1856 ISITQ 1860 (2281)
T ss_pred HHHHc
Confidence 77765
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=5.5e-15 Score=164.98 Aligned_cols=184 Identities=24% Similarity=0.300 Sum_probs=127.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.... .++.+||+||+|||||++|+.+|+.+++.
T Consensus 20 vVGQe~iv~~L~~~i~~~r-------------------------------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~ 68 (484)
T PRK14956 20 VIHQDLAIGALQNALKSGK-------------------------------IGHAYIFFGPRGVGKTTIARILAKRLNCEN 68 (484)
T ss_pred HhChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence 7999999999988885110 02568999999999999999999998652
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.+++. ...|. ..++++..............|+||||+|.|...
T Consensus 69 ~~~~~pCg~C~sC~~i~~g~~~dviEIdaa-----s~~gV---d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~---- 136 (484)
T PRK14956 69 PIGNEPCNECTSCLEITKGISSDVLEIDAA-----SNRGI---ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ---- 136 (484)
T ss_pred ccCccccCCCcHHHHHHccCCccceeechh-----hcccH---HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH----
Confidence 2222221 11121 223333332221111234569999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...+++||++++...
T Consensus 137 ----------A~NALLKtLEE---------------------Pp~~viFILaTte~~----------------------- 162 (484)
T PRK14956 137 ----------SFNALLKTLEE---------------------PPAHIVFILATTEFH----------------------- 162 (484)
T ss_pred ----------HHHHHHHHhhc---------------------CCCceEEEeecCChh-----------------------
Confidence 99999999983 123477887765210
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.|.+++|.. ++.|.+++.+++.+.+++.+. .. .+.++
T Consensus 163 ---------------------------kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~-----------~E--gi~~e 201 (484)
T PRK14956 163 ---------------------------KIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCK-----------IE--NVQYD 201 (484)
T ss_pred ---------------------------hccHHHHhhhh-eeeecCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 14567777765 689999999998887775321 12 47789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ .++.|..-++++.++
T Consensus 202 ~eAL~~Ia~~S---~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 202 QEGLFWIAKKG---DGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHc---CChHHHHHHHHHHHH
Confidence 99999999974 677899888888765
No 77
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.61 E-value=1.1e-14 Score=169.64 Aligned_cols=228 Identities=21% Similarity=0.258 Sum_probs=154.7
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005667 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAr 348 (684)
..+...+++ +.|.+.+++.+.+.+.. .+..... . .. .. ..+.++||+||||||||++|+
T Consensus 145 ~~~~~~~~d-i~g~~~~~~~l~~i~~~-~~~~~~~-~---~~--------------~~-~~~~gill~G~~G~GKt~~~~ 203 (644)
T PRK10733 145 DQIKTTFAD-VAGCDEAKEEVAELVEY-LREPSRF-Q---KL--------------GG-KIPKGVLMVGPPGTGKTLLAK 203 (644)
T ss_pred hhhhCcHHH-HcCHHHHHHHHHHHHHH-hhCHHHH-H---hc--------------CC-CCCCcEEEECCCCCCHHHHHH
Confidence 344445554 68999999999888752 1110000 0 00 00 113679999999999999999
Q ss_pred HHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHH
Q 005667 349 TLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 349 aIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~ 428 (684)
++|+.++.||+.++++++. ..++|.. ...++.+|..+. ...++||||||||.+...|+.+..+.+...+++++.
T Consensus 204 ~~a~~~~~~f~~is~~~~~-~~~~g~~-~~~~~~~f~~a~----~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~ 277 (644)
T PRK10733 204 AIAGEAKVPFFTISGSDFV-EMFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ 277 (644)
T ss_pred HHHHHcCCCEEEEehHHhH-Hhhhccc-HHHHHHHHHHHH----hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHH
Confidence 9999999999999999887 4577776 566777776653 357899999999999987765444445556678899
Q ss_pred HHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhH
Q 005667 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ 508 (684)
||..|||.. ....+++|+|+|..+
T Consensus 278 lL~~mdg~~-------------------~~~~vivIaaTN~p~------------------------------------- 301 (644)
T PRK10733 278 MLVEMDGFE-------------------GNEGIIVIAATNRPD------------------------------------- 301 (644)
T ss_pred HHHhhhccc-------------------CCCCeeEEEecCChh-------------------------------------
Confidence 999998421 123578888877432
Q ss_pred HhhhccchHHHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcC
Q 005667 509 LMETVESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 509 ll~~v~~~dl~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay 586 (684)
.+.|.++ +|||..+.++.++.++..+|++..+..+ ...-.++ +..+++ .
T Consensus 302 -------------~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~-----------~l~~~~d---~~~la~--~ 352 (644)
T PRK10733 302 -------------VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-----------PLAPDID---AAIIAR--G 352 (644)
T ss_pred -------------hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC-----------CCCCcCC---HHHHHh--h
Confidence 1234444 5999999999999999999987632211 1111121 334555 3
Q ss_pred CCCCChHHHHHHHHHHHHHHHh
Q 005667 587 SKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
..++..+.|.+++..+...+..
T Consensus 353 t~G~sgadl~~l~~eAa~~a~r 374 (644)
T PRK10733 353 TPGFSGADLANLVNEAALFAAR 374 (644)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 4566678888888777665543
No 78
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.2e-15 Score=157.85 Aligned_cols=126 Identities=27% Similarity=0.423 Sum_probs=102.1
Q ss_pred ccChHHHHHHHHHHHHhhHHh--HhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 279 VIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~r--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
|-|.+..++.++++|..++-. .+... --.||.+|+|||+||||||+||+|+|+....
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~Yeem---------------------GikpPKGVIlyG~PGTGKTLLAKAVANqTSA 245 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEM---------------------GIKPPKGVILYGEPGTGKTLLAKAVANQTSA 245 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHc---------------------CCCCCCeeEEeCCCCCchhHHHHHHhcccch
Confidence 789999999999999744322 12111 1134689999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.|+++-.+++. ..|.|+. ...++++|+.+.. ..++|+||||||.+...|-..+.+++ +++|.++|++|+
T Consensus 246 TFlRvvGseLi-QkylGdG-pklvRqlF~vA~e----~apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELLN 314 (440)
T KOG0726|consen 246 TFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----HAPSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELLN 314 (440)
T ss_pred hhhhhhhHHHH-HHHhccc-hHHHHHHHHHHHh----cCCceEEeehhhhhccccccCCCccH---HHHHHHHHHHHH
Confidence 99999999998 5799998 6899999998764 68999999999999998766543333 348888888876
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.6e-14 Score=162.46 Aligned_cols=185 Identities=26% Similarity=0.432 Sum_probs=126.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
|+||+++++.|..++..+. .++.+||+||||||||++|+++|+.++.
T Consensus 16 ivGq~~i~~~L~~~i~~~~-------------------------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~ 64 (472)
T PRK14962 16 VVGQDHVKKLIINALKKNS-------------------------------ISHAYIFAGPRGTGKTTVARILAKSLNCEN 64 (472)
T ss_pred ccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 7999999999888775110 1256899999999999999999998864
Q ss_pred ----------------------CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
.++.++++. ..|. +.++.+..........+...||||||+|.+...
T Consensus 65 ~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-----~~gi---d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~---- 132 (472)
T PRK14962 65 RKGVEPCNECRACRSIDEGTFMDVIELDAAS-----NRGI---DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE---- 132 (472)
T ss_pred CCCCCCCcccHHHHHHhcCCCCccEEEeCcc-----cCCH---HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH----
Confidence 244444321 1222 223343333222112245679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.||+.|+. ...+++||++++.. +
T Consensus 133 ----------a~~~LLk~LE~---------------------p~~~vv~Ilattn~--~--------------------- 158 (472)
T PRK14962 133 ----------AFNALLKTLEE---------------------PPSHVVFVLATTNL--E--------------------- 158 (472)
T ss_pred ----------HHHHHHHHHHh---------------------CCCcEEEEEEeCCh--H---------------------
Confidence 89999999982 11235556554411 0
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+.+|.. ++.|.+++.+++..+++..+. .. .+.++
T Consensus 159 ---------------------------kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~-----------~e--gi~i~ 197 (472)
T PRK14962 159 ---------------------------KVPPTIISRCQ-VIEFRNISDELIIKRLQEVAE-----------AE--GIEID 197 (472)
T ss_pred ---------------------------hhhHHHhcCcE-EEEECCccHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 13466777875 899999999999888875321 11 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ ++++|.+-+.++.++.
T Consensus 198 ~eal~~Ia~~s---~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 198 REALSFIAKRA---SGGLRDALTMLEQVWK 224 (472)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 99999999964 5778988888887553
No 80
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.60 E-value=1.9e-14 Score=159.47 Aligned_cols=166 Identities=28% Similarity=0.413 Sum_probs=117.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
.+++|+||||||||++|+++|+.++.+|+.+++.... ...++.++...........+.||||||||.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 6899999999999999999999999999999885421 1223333333211111235689999999999877
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcc
Q 005667 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~ 490 (684)
.|+.|+..|++. .+++|.+++...
T Consensus 108 --------------~q~~LL~~le~~-----------------------~iilI~att~n~------------------- 131 (413)
T PRK13342 108 --------------QQDALLPHVEDG-----------------------TITLIGATTENP------------------- 131 (413)
T ss_pred --------------HHHHHHHHhhcC-----------------------cEEEEEeCCCCh-------------------
Confidence 899999999821 133443322100
Q ss_pred cccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcc
Q 005667 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~ 570 (684)
...+.+.+++|+ .++.|.+++.+++.+++.+.+... ..++
T Consensus 132 -----------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~---------~~~~- 171 (413)
T PRK13342 132 -----------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDK---------ERGL- 171 (413)
T ss_pred -----------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHh---------hcCC-
Confidence 001457888898 588999999999999888643221 0122
Q ss_pred eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+.+++++++.|++.+ ++++|.+.++++.++.
T Consensus 172 i~i~~~al~~l~~~s---~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 172 VELDDEALDALARLA---NGDARRALNLLELAAL 202 (413)
T ss_pred CCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 478999999999963 6779999999998653
No 81
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.60 E-value=4.1e-15 Score=167.73 Aligned_cols=196 Identities=21% Similarity=0.345 Sum_probs=145.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh--CCCEEEEeccccc----cccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV--NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l--~~pfv~v~~s~l~----~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
..++|+.|+|||||..+||++.+.. ..||+.+||..+. ++.++|+..++......+.-.+.++.+.+|++|+||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFlde 415 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDE 415 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHH
Confidence 4799999999999999999996555 5799999999774 477888886555544444445678889999999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcccc
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|..|+-. +|..||++++ |.++.| | +..+.||.+ +| +++..||...+.+++|+
T Consensus 416 Igd~p~~--------------~Qs~LLrVl~e~~v~p~---g------~~~~~vdir---vi-~ath~dl~~lv~~g~fr 468 (606)
T COG3284 416 IGDMPLA--------------LQSRLLRVLQEGVVTPL---G------GTRIKVDIR---VI-AATHRDLAQLVEQGRFR 468 (606)
T ss_pred hhhchHH--------------HHHHHHHHHhhCceecc---C------CcceeEEEE---EE-eccCcCHHHHHHcCCch
Confidence 9999988 9999999997 444433 2 222466644 33 55567999999999888
Q ss_pred CCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHH
Q 005667 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (684)
Q Consensus 483 ~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~ 562 (684)
.+++|+++.... -.|+|+.|=|. ...+.+|+.+
T Consensus 469 edLyyrL~~~~i----------------------------~lP~lr~R~d~--------~~~l~~~~~~----------- 501 (606)
T COG3284 469 EDLYYRLNAFVI----------------------------TLPPLRERSDR--------IPLLDRILKR----------- 501 (606)
T ss_pred HHHHHHhcCeee----------------------------ccCchhccccc--------HHHHHHHHHH-----------
Confidence 888887765432 12556666442 2223333332
Q ss_pred HHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 563 MFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 563 ~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
.....+.++++++..|.. |.|++|.|+|.++|+.+..
T Consensus 502 ---~~~~~~~l~~~~~~~l~~--~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 502 ---ENDWRLQLDDDALARLLA--YRWPGNIRELDNVIERLAA 538 (606)
T ss_pred ---ccCCCccCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHH
Confidence 122468899999999998 8999999999999998764
No 82
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2e-14 Score=166.24 Aligned_cols=184 Identities=26% Similarity=0.345 Sum_probs=127.0
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+++++.|..++.... ..+.+||+||+|||||++|+.+|+.+++.
T Consensus 18 VIGQe~Vv~~L~~aL~~gR-------------------------------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~ 66 (830)
T PRK07003 18 LVGQEHVVRALTHALDGGR-------------------------------LHHAYLFTGTRGVGKTTLSRIFAKALNCET 66 (830)
T ss_pred HcCcHHHHHHHHHHHhcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 7999999999998875110 12567999999999999999999998642
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.+|..+ -.| -..++++++...+........|+||||+|.|...
T Consensus 67 ~~~~~PCG~C~sCr~I~~G~h~DviEIDAas-----~rg---VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~---- 134 (830)
T PRK07003 67 GVTSQPCGVCRACREIDEGRFVDYVEMDAAS-----NRG---VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH---- 134 (830)
T ss_pred CCCCCCCcccHHHHHHhcCCCceEEEecccc-----ccc---HHHHHHHHHHHHhccccCCceEEEEeChhhCCHH----
Confidence 22222211 111 1234444443322222345679999999999877
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.||+.||+ ...+++||++++...
T Consensus 135 ----------A~NALLKtLEE---------------------PP~~v~FILaTtd~~----------------------- 160 (830)
T PRK07003 135 ----------AFNAMLKTLEE---------------------PPPHVKFILATTDPQ----------------------- 160 (830)
T ss_pred ----------HHHHHHHHHHh---------------------cCCCeEEEEEECChh-----------------------
Confidence 89999999983 123477777766211
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|.. .+.|.+++.+++.+.|++.+. .+ .+.++
T Consensus 161 ---------------------------KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il~-----------~E--gI~id 199 (830)
T PRK07003 161 ---------------------------KIPVTVLSRCL-QFNLKQMPAGHIVSHLERILG-----------EE--RIAFE 199 (830)
T ss_pred ---------------------------hccchhhhheE-EEecCCcCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 14467777874 799999999999988875321 12 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ .+..|...++++..+
T Consensus 200 ~eAL~lIA~~A---~GsmRdALsLLdQAi 225 (830)
T PRK07003 200 PQALRLLARAA---QGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999964 555787777776655
No 83
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.9e-15 Score=152.26 Aligned_cols=180 Identities=22% Similarity=0.323 Sum_probs=129.5
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|-|.++.++.|.++|..+..+..... .. + -.||.++|+|||||||||++||+.|...+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~----~l---g------------i~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFE----NL---G------------IRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHH----hc---C------------CCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 378999999999999974443211110 00 1 1245899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+-...+. ..|+|.+ .+.+++.|..+.. ..++||||||+|.+...|-.+.-.+ ++++|.++|+++..
T Consensus 233 FLKLAgPQLV-QMfIGdG-AkLVRDAFaLAKE----kaP~IIFIDElDAIGtKRfDSek~G---DREVQRTMLELLNQ-- 301 (424)
T KOG0652|consen 233 FLKLAGPQLV-QMFIGDG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKAG---DREVQRTMLELLNQ-- 301 (424)
T ss_pred HHHhcchHHH-hhhhcch-HHHHHHHHHHhhc----cCCeEEEEechhhhccccccccccc---cHHHHHHHHHHHHh--
Confidence 9999988888 4599988 7899999887654 5789999999999988865433222 34588888887751
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
-+|. . ....+-+|.++|..|+
T Consensus 302 ----LDGF--s--------s~~~vKviAATNRvDi--------------------------------------------- 322 (424)
T KOG0652|consen 302 ----LDGF--S--------SDDRVKVIAATNRVDI--------------------------------------------- 322 (424)
T ss_pred ----hcCC--C--------CccceEEEeecccccc---------------------------------------------
Confidence 0111 1 1122445555553331
Q ss_pred HHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhc
Q 005667 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 518 l~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
+.|.|+ +|+|.-|.|+-++++...+|++.
T Consensus 323 -----LDPALlRSGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 323 -----LDPALLRSGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred -----cCHHHhhcccccccccCCCCChHHHHHHHHH
Confidence 224443 68999999999999999999875
No 84
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.6e-15 Score=150.12 Aligned_cols=129 Identities=24% Similarity=0.329 Sum_probs=101.9
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|-|..+.++.+.+.|..++....... .. +- -||.++|++||||||||++||++|+..+.-
T Consensus 178 dvggckeqieklrevve~pll~perfv----~l---gi------------dppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFV----NL---GI------------DPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHh----hc---CC------------CCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 478999999999999986554321111 00 11 145899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|+++-.+++. ..|+|+. ...++++|+.+.. ..-||||+||||.+...|-..+.++| .++|.++|+++.
T Consensus 239 firvigselv-qkyvgeg-armvrelf~mart----kkaciiffdeidaiggarfddg~ggd---nevqrtmleli~ 306 (435)
T KOG0729|consen 239 FIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGD---NEVQRTMLELIN 306 (435)
T ss_pred EEeehhHHHH-HHHhhhh-HHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCc---HHHHHHHHHHHH
Confidence 9999999999 6799998 7899999998865 45699999999999887655443444 348888888875
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=99.58 E-value=2e-14 Score=153.93 Aligned_cols=181 Identities=23% Similarity=0.302 Sum_probs=120.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
|+||+++++.|..++... ...++||+||||||||++|+++|+.+..
T Consensus 15 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDG--------------------------------NMPNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 689999999888776410 0157999999999999999999999732
Q ss_pred ---CEEEEeccccccccccccchHHHHHHHHh---hcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 357 ---PFVIADATTLTQAGYVGEDVESILYKLLT---VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 357 ---pfv~v~~s~l~~~gyvG~~~~~~l~~l~~---~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
.++.++.++. .|.+ .++..+. ............|++|||+|.+... .|++|+
T Consensus 63 ~~~~~~eln~sd~-----~~~~---~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~ 120 (319)
T PLN03025 63 YKEAVLELNASDD-----RGID---VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALR 120 (319)
T ss_pred Cccceeeeccccc-----ccHH---HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHH
Confidence 2455555432 2222 2222221 1111011124579999999999877 899999
Q ss_pred HHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
+.||.. ..++.||+++|...
T Consensus 121 ~~lE~~---------------------~~~t~~il~~n~~~--------------------------------------- 140 (319)
T PLN03025 121 RTMEIY---------------------SNTTRFALACNTSS--------------------------------------- 140 (319)
T ss_pred HHHhcc---------------------cCCceEEEEeCCcc---------------------------------------
Confidence 999820 11133444444210
Q ss_pred hhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCC
Q 005667 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~ 590 (684)
.+.|++++|.. ++.|.+++.+++.+.+...+. .. .+.++++++++|++.+ ++
T Consensus 141 -----------~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~-----------~e--gi~i~~~~l~~i~~~~---~g 192 (319)
T PLN03025 141 -----------KIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVE-----------AE--KVPYVPEGLEAIIFTA---DG 192 (319)
T ss_pred -----------ccchhHHHhhh-cccCCCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHc---CC
Confidence 13467777864 799999999999888875321 12 5678999999999963 55
Q ss_pred ChHHHHHHHHH
Q 005667 591 GARGLRSLLEN 601 (684)
Q Consensus 591 GAR~Lr~iIe~ 601 (684)
+.|.+-+.+|.
T Consensus 193 DlR~aln~Lq~ 203 (319)
T PLN03025 193 DMRQALNNLQA 203 (319)
T ss_pred CHHHHHHHHHH
Confidence 67887777773
No 86
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.1e-15 Score=161.21 Aligned_cols=220 Identities=24% Similarity=0.307 Sum_probs=159.2
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.+.|++.||+.+.+++..+..|.... .+...+.+++||.||||+|||+|+++||.+++..
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~d~F--------------------~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRPDLF--------------------LGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccchHhh--------------------hccccccchhheecCCCCchHHHHHHHHhhhcce
Confidence 48899999999999998666543222 2233345899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++.++ +.|+|+. +..++.+|..|.. .+++|+||||||++..+|. ...++..++.+..+|-.+++..
T Consensus 214 ff~iSassLt-sK~~Ge~-eK~vralf~vAr~----~qPsvifidEidslls~Rs---~~e~e~srr~ktefLiq~~~~~ 284 (428)
T KOG0740|consen 214 FFNISASSLT-SKYVGES-EKLVRALFKVARS----LQPSVIFIDEIDSLLSKRS---DNEHESSRRLKTEFLLQFDGKN 284 (428)
T ss_pred EeeccHHHhh-hhccChH-HHHHHHHHHHHHh----cCCeEEEechhHHHHhhcC---CcccccchhhhhHHHhhhcccc
Confidence 9999999999 7899998 8999999988764 5899999999999999873 2344455567777777776422
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCccc-HHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccch
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~d-Le~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
. . ...++++|.|+|... +|
T Consensus 285 s---------~--------~~drvlvigaTN~P~e~D------------------------------------------- 304 (428)
T KOG0740|consen 285 S---------A--------PDDRVLVIGATNRPWELD------------------------------------------- 304 (428)
T ss_pred C---------C--------CCCeEEEEecCCCchHHH-------------------------------------------
Confidence 1 1 112577777766321 22
Q ss_pred HHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
..++.||.-.+.++.++.+....++++ ++++ . .-.+++..++.|++ ...+++.-.+.
T Consensus 305 --------ea~~Rrf~kr~yiplPd~etr~~~~~~----ll~~-------~--~~~l~~~d~~~l~~--~Tegysgsdi~ 361 (428)
T KOG0740|consen 305 --------EAARRRFVKRLYIPLPDYETRSLLWKQ----LLKE-------Q--PNGLSDLDISLLAK--VTEGYSGSDIT 361 (428)
T ss_pred --------HHHHHHhhceeeecCCCHHHHHHHHHH----HHHh-------C--CCCccHHHHHHHHH--HhcCcccccHH
Confidence 223336666777888888888888775 3222 2 34567888888888 45566666777
Q ss_pred HHHHHHHHHHHhc
Q 005667 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
.++..+......+
T Consensus 362 ~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 362 ALCKEAAMGPLRE 374 (428)
T ss_pred HHHHHhhcCchhh
Confidence 7776665544443
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=3.3e-14 Score=166.74 Aligned_cols=170 Identities=26% Similarity=0.330 Sum_probs=117.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhH-hhcCCEEEEccccccch
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA-AAQQGIVYIDEVDKITK 409 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~-~a~~gVLfIDEIDkL~~ 409 (684)
.+++|+||||||||++|+++|+.++.+|+.+++.... . ..++..+......+. .....+|||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------V---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------h---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 5899999999999999999999999999888875321 1 111222221110011 12457999999999987
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCc
Q 005667 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~ 489 (684)
. .|+.|+..++.. .+++|++++....
T Consensus 124 ~--------------qQdaLL~~lE~g-----------------------~IiLI~aTTenp~----------------- 149 (725)
T PRK13341 124 A--------------QQDALLPWVENG-----------------------TITLIGATTENPY----------------- 149 (725)
T ss_pred H--------------HHHHHHHHhcCc-----------------------eEEEEEecCCChH-----------------
Confidence 7 899999999821 1445554331100
Q ss_pred ccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCc
Q 005667 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi 569 (684)
..+.+.+++|. .++.|++|+.+++.++++..+....+.+ . ..
T Consensus 150 -------------------------------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~----g--~~ 191 (725)
T PRK13341 150 -------------------------------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGY----G--DR 191 (725)
T ss_pred -------------------------------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhc----C--Cc
Confidence 01336677775 3789999999999999997554332211 1 12
Q ss_pred ceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 570 ~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
.+.+++++++.|++.+ ++++|.+.++++.++.
T Consensus 192 ~v~I~deaL~~La~~s---~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA---NGDARSLLNALELAVE 223 (725)
T ss_pred ccCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 5779999999999964 7789999999998764
No 88
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.8e-15 Score=162.98 Aligned_cols=200 Identities=27% Similarity=0.380 Sum_probs=144.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-CEEEEeccccccccccccchHHHHHHHHhhcchhhH----hhcCCEEEEcccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA----AAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~-pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~----~a~~gVLfIDEID 405 (684)
.++||+||||||||++||.|.+.++. +--.+|..++. .+|+|++ +..++.+|..+..... ...-.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 79999999999999999999999964 44567888888 7899999 7889999987653211 1123589999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccH-HHHHHhccccCC
Q 005667 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSS 484 (684)
Q Consensus 406 kL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dL-e~~i~~r~~~~~ 484 (684)
.+++.|++..++..+++. +.++||.-|||-. ...|+++|--+|..|| |+++
T Consensus 335 AICKqRGS~~g~TGVhD~-VVNQLLsKmDGVe-------------------qLNNILVIGMTNR~DlIDEAL-------- 386 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDT-VVNQLLSKMDGVE-------------------QLNNILVIGMTNRKDLIDEAL-------- 386 (744)
T ss_pred HHHHhcCCCCCCCCccHH-HHHHHHHhcccHH-------------------hhhcEEEEeccCchhhHHHHh--------
Confidence 999999987776666655 9999999999621 2457888876664432 1111
Q ss_pred CCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHH
Q 005667 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 485 IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l 564 (684)
++| +|+.+.+...-+++.-..+|++-+..++
T Consensus 387 --------------------------------------LRP---GRlEVqmEIsLPDE~gRlQIl~IHT~rM-------- 417 (744)
T KOG0741|consen 387 --------------------------------------LRP---GRLEVQMEISLPDEKGRLQILKIHTKRM-------- 417 (744)
T ss_pred --------------------------------------cCC---CceEEEEEEeCCCccCceEEEEhhhhhh--------
Confidence 345 7888888888888888888887643332
Q ss_pred hhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005667 565 QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 565 ~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+.. .+-=++--++.|+. ..+++..-+|+.+|..+-.-||.+....
T Consensus 418 re~--~~l~~dVdl~elA~--lTKNfSGAEleglVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 418 REN--NKLSADVDLKELAA--LTKNFSGAELEGLVKSAQSFAMNRHVKA 462 (744)
T ss_pred hhc--CCCCCCcCHHHHHH--HhcCCchhHHHHHHHHHHHHHHHhhhcc
Confidence 211 11112223555666 3567777899999999888888765543
No 89
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.7e-14 Score=161.66 Aligned_cols=185 Identities=23% Similarity=0.295 Sum_probs=127.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.+. ..++.+||+||+|||||++|+++|+.+++.
T Consensus 17 VIGQe~vv~~L~~aI~~g-------------------------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~ 65 (702)
T PRK14960 17 LVGQNHVSRALSSALERG-------------------------------RLHHAYLFTGTRGVGKTTIARILAKCLNCET 65 (702)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 799999999999888511 012688999999999999999999998652
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.+++++ ..+ -..+++++....+....+...|++|||+|.|...
T Consensus 66 ~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-----~~~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~---- 133 (702)
T PRK14960 66 GVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-----RTK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH---- 133 (702)
T ss_pred CCCCCCCccCHHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH----
Confidence 23333321 111 2334555544333222345679999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...++.||++++.. .
T Consensus 134 ----------A~NALLKtLEE---------------------PP~~v~FILaTtd~--~--------------------- 159 (702)
T PRK14960 134 ----------SFNALLKTLEE---------------------PPEHVKFLFATTDP--Q--------------------- 159 (702)
T ss_pred ----------HHHHHHHHHhc---------------------CCCCcEEEEEECCh--H---------------------
Confidence 89999999982 11235566655411 0
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|.. ++.|.+++.+++.+.+...+.. . .+.++
T Consensus 160 ---------------------------kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~k-----------E--gI~id 198 (702)
T PRK14960 160 ---------------------------KLPITVISRCL-QFTLRPLAVDEITKHLGAILEK-----------E--QIAAD 198 (702)
T ss_pred ---------------------------hhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHH-----------c--CCCCC
Confidence 12245556664 7999999999999888763211 1 57899
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
++++..|++.+ +++.|.+.+.++.++.
T Consensus 199 ~eAL~~IA~~S---~GdLRdALnLLDQaIa 225 (702)
T PRK14960 199 QDAIWQIAESA---QGSLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999974 5678888888876653
No 90
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.56 E-value=1.9e-14 Score=159.32 Aligned_cols=249 Identities=16% Similarity=0.257 Sum_probs=152.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
..++++|++||||+++|+++.... +.||+.++|..+.+ ...+|+..+. +........+.+..+.+|+|||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGA-FTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCC-cCCCCcCCCCceeECCCCEEEEec
Confidence 789999999999999999997665 47899999987642 1112221110 000001112345567889999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.|+.. +|..|++.++...+. ..+....+.+ ++.+|++++. ++...+..+
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~-------~~~~~~~~~~---~~rii~~t~~-~~~~~~~~~---- 292 (441)
T PRK10365 242 IGDISPM--------------MQVRLLRAIQEREVQ-------RVGSNQTISV---DVRLIAATHR-DLAAEVNAG---- 292 (441)
T ss_pred cccCCHH--------------HHHHHHHHHccCcEE-------eCCCCceeee---ceEEEEeCCC-CHHHHHHcC----
Confidence 9999998 999999999843321 1111111222 3455655542 443333322
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccce-EEEcCCCCH--HHHHHHHhchHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|.++|+.|+.. .+.++||.+ +|+..++...+.++.+++
T Consensus 293 --------------------------------------~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~ 334 (441)
T PRK10365 293 --------------------------------------RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERN 334 (441)
T ss_pred --------------------------------------CchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHh
Confidence 366777777753 467777765 688888887655543322
Q ss_pred HHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcccCCCcce
Q 005667 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAK 640 (684)
Q Consensus 561 ~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~~g~~~~ 640 (684)
. .....+++++++.|.. |+|++|+|+|+++|++++..+-.. .|+.+.+..........
T Consensus 335 ~------~~~~~~~~~a~~~L~~--~~wpgN~reL~~~~~~~~~~~~~~--------------~i~~~~l~~~~~~~~~~ 392 (441)
T PRK10365 335 R------KAVKGFTPQAMDLLIH--YDWPGNIRELENAVERAVVLLTGE--------------YISERELPLAIASTPIP 392 (441)
T ss_pred C------CCCCCcCHHHHHHHHh--CCCCCHHHHHHHHHHHHHHhCCCC--------------ccchHhCchhhcccccC
Confidence 1 1134599999999999 899999999999999977642111 11211211100000000
Q ss_pred EEcCCChHHHHHHHHhhhhhhhccccCCCCC
Q 005667 641 ILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 641 i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
......+. -+++.|+..|.+.+..++|+.
T Consensus 393 -~~~~~~~~-~l~~~e~~~i~~~l~~~~gn~ 421 (441)
T PRK10365 393 -LGQSQDIQ-PLVEVEKEVILAALEKTGGNK 421 (441)
T ss_pred -cccccchh-hHHHHHHHHHHHHHHHhCCCH
Confidence 00111222 367889999999998888874
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3.3e-14 Score=162.62 Aligned_cols=184 Identities=26% Similarity=0.342 Sum_probs=124.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+++++.|..++.... .++.+||+||+|||||++|+.+|+.+++.
T Consensus 18 VIGQe~vv~~L~~al~~gR-------------------------------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~ 66 (700)
T PRK12323 18 LVGQEHVVRALTHALEQQR-------------------------------LHHAYLFTGTRGVGKTTLSRILAKSLNCTG 66 (700)
T ss_pred HcCcHHHHHHHHHHHHhCC-------------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 7999999999998885210 12567999999999999999999999651
Q ss_pred ----------------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccch
Q 005667 358 ----------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 358 ----------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~ 409 (684)
++.++.. ...|. +.++++++...+........|++|||+|.|..
T Consensus 67 p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa-----s~~gV---DdIReLie~~~~~P~~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 67 ADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA-----SNRGV---DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN 138 (700)
T ss_pred ccccccCCCCCCcccHHHHHHHcCCCCcceEeccc-----ccCCH---HHHHHHHHHHHhchhcCCceEEEEEChHhcCH
Confidence 1222221 11121 23444444332222234567999999999988
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCc
Q 005667 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~ 489 (684)
. .+|.||+.||+ ...+++||++++...
T Consensus 139 ~--------------AaNALLKTLEE---------------------PP~~v~FILaTtep~------------------ 165 (700)
T PRK12323 139 H--------------AFNAMLKTLEE---------------------PPEHVKFILATTDPQ------------------ 165 (700)
T ss_pred H--------------HHHHHHHhhcc---------------------CCCCceEEEEeCChH------------------
Confidence 7 89999999983 123466777665211
Q ss_pred ccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCc
Q 005667 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi 569 (684)
.+.+.+++|.. .+.|.+++.+++.+.+.+.+. ..
T Consensus 166 --------------------------------kLlpTIrSRCq-~f~f~~ls~eei~~~L~~Il~-----------~E-- 199 (700)
T PRK12323 166 --------------------------------KIPVTVLSRCL-QFNLKQMPPGHIVSHLDAILG-----------EE-- 199 (700)
T ss_pred --------------------------------hhhhHHHHHHH-hcccCCCChHHHHHHHHHHHH-----------Hc--
Confidence 13355556653 789999999999888775321 11
Q ss_pred ceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 570 ~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
.+.+++++++.|++.+ ++..|...++++..+
T Consensus 200 gi~~d~eAL~~IA~~A---~Gs~RdALsLLdQai 230 (700)
T PRK12323 200 GIAHEVNALRLLAQAA---QGSMRDALSLTDQAI 230 (700)
T ss_pred CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 5678999999999863 566777777776544
No 92
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.3e-14 Score=164.69 Aligned_cols=189 Identities=25% Similarity=0.324 Sum_probs=124.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+.+++.|..++... | .++.+||+||||||||++|+++|+.+++.-
T Consensus 18 IIGQe~Iv~~LknaI~~~--r-----------------------------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~ 66 (944)
T PRK14949 18 MVGQSHVLHALTNALTQQ--R-----------------------------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQ 66 (944)
T ss_pred hcCcHHHHHHHHHHHHhC--C-----------------------------CCeEEEEECCCCCCHHHHHHHHHHhccCcc
Confidence 799999999998887511 0 125569999999999999999999996531
Q ss_pred E-------EE-eccc-----------cccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCC
Q 005667 359 V-------IA-DATT-----------LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 359 v-------~v-~~s~-----------l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d 419 (684)
. .+ .|.. +......+ -..++.+..........+...|+||||+|+|...
T Consensus 67 ~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~k---VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e--------- 134 (944)
T PRK14949 67 GVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTK---VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS--------- 134 (944)
T ss_pred CCCCCCCCCchHHHHHhcCCCceEEEeccccccC---HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH---------
Confidence 0 00 0000 10010112 1234444433222222345679999999999887
Q ss_pred CchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCC
Q 005667 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~ 499 (684)
.+++||+.||. ...+++||++++...
T Consensus 135 -----AqNALLKtLEE---------------------PP~~vrFILaTTe~~---------------------------- 160 (944)
T PRK14949 135 -----SFNALLKTLEE---------------------PPEHVKFLLATTDPQ---------------------------- 160 (944)
T ss_pred -----HHHHHHHHHhc---------------------cCCCeEEEEECCCch----------------------------
Confidence 99999999993 112355665544210
Q ss_pred CchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHH
Q 005667 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALR 579 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~ 579 (684)
.+.+.+++|. .++.|.+++.+++.+.+.+.+.. . .+.+++++++
T Consensus 161 ----------------------kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~-----------E--gI~~edeAL~ 204 (944)
T PRK14949 161 ----------------------KLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ-----------E--QLPFEAEALT 204 (944)
T ss_pred ----------------------hchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHH
Confidence 1335566665 37999999999999888753221 1 5778999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHH
Q 005667 580 LIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 580 ~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
.|++.+ ++..|..-++++..+
T Consensus 205 lIA~~S---~Gd~R~ALnLLdQal 225 (944)
T PRK14949 205 LLAKAA---NGSMRDALSLTDQAI 225 (944)
T ss_pred HHHHHc---CCCHHHHHHHHHHHH
Confidence 999963 666888888887655
No 93
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.4e-14 Score=151.50 Aligned_cols=128 Identities=24% Similarity=0.335 Sum_probs=101.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|-|.-..++.+.+.|..|+...+-..+ . + -.+|..++||||||||||++|+++|..+++.|
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~r----v--------------g-Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLR----V--------------G-IKPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccc----c--------------C-CCCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 678888888888888766553221110 0 0 12458999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+.++++. .+|.|+. ...+++.|..+.. ..+||||+||||.....+.+ +..++.+.+|.+|..+++
T Consensus 195 l~v~ss~lv-~kyiGEs-aRlIRemf~yA~~----~~pciifmdeiDAigGRr~s---e~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 195 LKVVSSALV-DKYIGES-ARLIRDMFRYARE----VIPCIIFMDEIDAIGGRRFS---EGTSSDREIQRTLMELLN 261 (388)
T ss_pred EEeeHhhhh-hhhcccH-HHHHHHHHHHHhh----hCceEEeehhhhhhccEEec---cccchhHHHHHHHHHHHH
Confidence 999999998 7899998 8999999988764 46799999999999887644 345555668888888876
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.5e-14 Score=157.98 Aligned_cols=184 Identities=27% Similarity=0.318 Sum_probs=125.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.... .++.+||+||+|||||++|+++|+.+++.
T Consensus 18 ivGq~~v~~~L~~~~~~~~-------------------------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 66 (509)
T PRK14958 18 VIGQAPVVRALSNALDQQY-------------------------------LHHAYLFTGTRGVGKTTISRILAKCLNCEK 66 (509)
T ss_pred hcCCHHHHHHHHHHHHhCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 7999999999998885110 12568999999999999999999998642
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.++++ ...|. ..++++.....+....+...|++|||+|.|...
T Consensus 67 ~~~~~pCg~C~~C~~i~~g~~~d~~eidaa-----s~~~v---~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~---- 134 (509)
T PRK14958 67 GVSANPCNDCENCREIDEGRFPDLFEVDAA-----SRTKV---EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH---- 134 (509)
T ss_pred CCCcccCCCCHHHHHHhcCCCceEEEEccc-----ccCCH---HHHHHHHHHHhhccccCCcEEEEEEChHhcCHH----
Confidence 3333332 11222 224455443322222345679999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...++.||++++. ..
T Consensus 135 ----------a~naLLk~LEe---------------------pp~~~~fIlattd--~~--------------------- 160 (509)
T PRK14958 135 ----------SFNALLKTLEE---------------------PPSHVKFILATTD--HH--------------------- 160 (509)
T ss_pred ----------HHHHHHHHHhc---------------------cCCCeEEEEEECC--hH---------------------
Confidence 89999999992 1123556665441 10
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|.. ++.|.+++.+++.+.+...+ +.. .+.++
T Consensus 161 ---------------------------kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~il-----------~~e--gi~~~ 199 (509)
T PRK14958 161 ---------------------------KLPVTVLSRCL-QFHLAQLPPLQIAAHCQHLL-----------KEE--NVEFE 199 (509)
T ss_pred ---------------------------hchHHHHHHhh-hhhcCCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 12244566653 68899999999888776522 122 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ +++.|.+.+.++.++
T Consensus 200 ~~al~~ia~~s---~GslR~al~lLdq~i 225 (509)
T PRK14958 200 NAALDLLARAA---NGSVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 99999999964 566898888888765
No 95
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.3e-13 Score=150.52 Aligned_cols=184 Identities=26% Similarity=0.328 Sum_probs=121.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+++++.+..++... ..++.+||+||+|||||++|+++|+.+.+.
T Consensus 18 iiGq~~~~~~l~~~~~~~-------------------------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~ 66 (363)
T PRK14961 18 IIGQKHIVTAISNGLSLG-------------------------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQN 66 (363)
T ss_pred ccChHHHHHHHHHHHHcC-------------------------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCC
Confidence 799999999998887511 012567999999999999999999998532
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.++.+. ..+ -..++.+..............|++|||+|++...
T Consensus 67 ~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~-----~~~---v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~---- 134 (363)
T PRK14961 67 GITSNPCRKCIICKEIEKGLCLDLIEIDAAS-----RTK---VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH---- 134 (363)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH----
Confidence 11111110 011 1223444332211111234569999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...++.||++++. ++
T Consensus 135 ----------a~naLLk~lEe---------------------~~~~~~fIl~t~~--~~--------------------- 160 (363)
T PRK14961 135 ----------SFNALLKTLEE---------------------PPQHIKFILATTD--VE--------------------- 160 (363)
T ss_pred ----------HHHHHHHHHhc---------------------CCCCeEEEEEcCC--hH---------------------
Confidence 89999999982 1123555655441 11
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+.+|. ..+.|.+++.+++.+++...+. .. .+.++
T Consensus 161 ---------------------------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~-----------~~--g~~i~ 199 (363)
T PRK14961 161 ---------------------------KIPKTILSRC-LQFKLKIISEEKIFNFLKYILI-----------KE--SIDTD 199 (363)
T ss_pred ---------------------------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 1335566776 4789999999999988875321 11 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.++..+ +++.|.+.+.++..+
T Consensus 200 ~~al~~ia~~s---~G~~R~al~~l~~~~ 225 (363)
T PRK14961 200 EYALKLIAYHA---HGSMRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999964 456888888887764
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.54 E-value=2.9e-14 Score=151.38 Aligned_cols=214 Identities=21% Similarity=0.301 Sum_probs=137.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC---EEEEeccccccccccccchHHHHHHHHhhcc-hhhHhhcCCEEEEccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGYVGEDVESILYKLLTVSD-YNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p---fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~-~~v~~a~~gVLfIDEIDk 406 (684)
..++||||||||||+||+.|+.-...+ |+.++++.-. ..-++++|+.+. .........||||||||+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 588999999999999999999888666 7777775432 234555555442 223345678999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCC
Q 005667 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 L~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IG 486 (684)
+.+. .|+.||..+|... |++|-+++-.
T Consensus 234 FNks--------------QQD~fLP~VE~G~-----------------------I~lIGATTEN---------------- 260 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVENGD-----------------------ITLIGATTEN---------------- 260 (554)
T ss_pred hhhh--------------hhhcccceeccCc-----------------------eEEEecccCC----------------
Confidence 9988 8999999998211 4444433300
Q ss_pred cCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhh
Q 005667 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~ 566 (684)
. .+.+..+|++|.. ++.+.+|..+++..|+.+.++.|.+--+..-..
T Consensus 261 --------------P------------------SFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l 307 (554)
T KOG2028|consen 261 --------------P------------------SFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPL 307 (554)
T ss_pred --------------C------------------ccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCC
Confidence 0 0124566777766 788999999999999998776665321100011
Q ss_pred CCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcccCCCcceEEcCCC
Q 005667 567 NGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKG 646 (684)
Q Consensus 567 ~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~~g~~~~i~~~~g 646 (684)
.+-.+.+++.++++|+..+ .+.+|---+.+|-.+.....+... -+.++++.+.+++.-+. ..++|+..
T Consensus 308 ~n~s~~ve~siidyla~ls---dGDaR~aLN~Lems~~m~~tr~g~-------~~~~~lSidDvke~lq~--s~~~YDr~ 375 (554)
T KOG2028|consen 308 PNSSMFVEDSIIDYLAYLS---DGDARAALNALEMSLSMFCTRSGQ-------SSRVLLSIDDVKEGLQR--SHILYDRA 375 (554)
T ss_pred CCcchhhhHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHhhcCC-------cccceecHHHHHHHHhh--ccceeccc
Confidence 1223468999999999853 556887778877654433332221 14566666666654321 12455444
Q ss_pred hHHHH
Q 005667 647 ALDRY 651 (684)
Q Consensus 647 ~l~~~ 651 (684)
..++|
T Consensus 376 Ge~HY 380 (554)
T KOG2028|consen 376 GEEHY 380 (554)
T ss_pred chhHH
Confidence 44444
No 97
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.54 E-value=2.3e-14 Score=140.56 Aligned_cols=149 Identities=26% Similarity=0.441 Sum_probs=101.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---~ 355 (684)
++|.+.+.+.+.+.+. +. ...+.+|||+|++||||+.+|++|.+.. +
T Consensus 1 liG~s~~m~~~~~~~~----~~--------------------------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~ 50 (168)
T PF00158_consen 1 LIGESPAMKRLREQAK----RA--------------------------ASSDLPVLITGETGTGKELLARAIHNNSPRKN 50 (168)
T ss_dssp SS--SHHHHHHHHHHH----HH--------------------------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTT
T ss_pred CEeCCHHHHHHHHHHH----HH--------------------------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhccc
Confidence 5788888888888774 11 0113799999999999999999998876 4
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHhh-----------cchhhHhhcCCEEEEccccccchhccccccCCCCchHH
Q 005667 356 VPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 356 ~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~-----------a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~ 424 (684)
.||+.+||+.+.+ +..-.++|.. ..+.++.+.+|+||||||+.|++.
T Consensus 51 ~pfi~vnc~~~~~--------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------- 108 (168)
T PF00158_consen 51 GPFISVNCAALPE--------ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------- 108 (168)
T ss_dssp S-EEEEETTTS-H--------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------
T ss_pred CCeEEEehhhhhc--------chhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHH--------------
Confidence 7999999988752 1222233322 235678899999999999999998
Q ss_pred HHHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccc
Q 005667 425 VQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 425 vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~ 491 (684)
+|..|+++|+ +....+ | ..+.+. .++-+|++++ .+|++.+.++.|+.+++|+.++
T Consensus 109 ~Q~~Ll~~l~~~~~~~~---g-----~~~~~~---~~~RiI~st~-~~l~~~v~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 109 LQAKLLRVLEEGKFTRL---G-----SDKPVP---VDVRIIASTS-KDLEELVEQGRFREDLYYRLNV 164 (168)
T ss_dssp HHHHHHHHHHHSEEECC---T-----SSSEEE-----EEEEEEES-S-HHHHHHTTSS-HHHHHHHTT
T ss_pred HHHHHHHHHhhchhccc---c-----cccccc---ccceEEeecC-cCHHHHHHcCCChHHHHHHhce
Confidence 9999999998 433322 1 112222 3566666655 5899999999999888877654
No 98
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.54 E-value=8.4e-14 Score=164.64 Aligned_cols=218 Identities=23% Similarity=0.321 Sum_probs=146.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|.|++++++.|.+.+..+........ ..+ . .++.++||+||||||||++|+++|+.++.+|
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~----~~g---i------------~~~~giLL~GppGtGKT~laraia~~~~~~~ 240 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFE----HLG---I------------EPPKGVLLYGPPGTGKTLLAKAVANEAGAYF 240 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHH----hcC---C------------CCCceEEEECCCCCChHHHHHHHHHHhCCeE
Confidence 78999999999999864433211000 000 0 1247999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|.|+. +..++.+|..+. ...++||||||||.+...++... .....++++.|+.+|++..
T Consensus 241 i~i~~~~i~-~~~~g~~-~~~l~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~- 310 (733)
T TIGR01243 241 ISINGPEIM-SKYYGES-EERLREIFKEAE----ENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLK- 310 (733)
T ss_pred EEEecHHHh-cccccHH-HHHHHHHHHHHH----hcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccc-
Confidence 999998887 5688876 567788887653 24678999999999988754321 1223458999999998411
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
....+++|.++|..+
T Consensus 311 ------------------~~~~vivI~atn~~~----------------------------------------------- 325 (733)
T TIGR01243 311 ------------------GRGRVIVIGATNRPD----------------------------------------------- 325 (733)
T ss_pred ------------------cCCCEEEEeecCChh-----------------------------------------------
Confidence 112356666655321
Q ss_pred HHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 ~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.|.++ +||+..+.+..++.++..+|++.... +..+ .++..++.+++. ..++-...|.
T Consensus 326 ---~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~-------------~~~l-~~d~~l~~la~~--t~G~~gadl~ 386 (733)
T TIGR01243 326 ---ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR-------------NMPL-AEDVDLDKLAEV--THGFVGADLA 386 (733)
T ss_pred ---hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc-------------CCCC-ccccCHHHHHHh--CCCCCHHHHH
Confidence 0224443 48999999999999999998873211 1111 123346667763 4555566777
Q ss_pred HHHHHHHHHHHhc
Q 005667 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
.++......++.+
T Consensus 387 ~l~~~a~~~al~r 399 (733)
T TIGR01243 387 ALAKEAAMAALRR 399 (733)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655543
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.54 E-value=2.7e-14 Score=130.81 Aligned_cols=111 Identities=30% Similarity=0.541 Sum_probs=83.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~ 412 (684)
+||+||||||||++|+.+|+.++.+++.+++.++. ..+.+.. ...+...+..+... ..++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~-~~~i~~~~~~~~~~---~~~~vl~iDe~d~l~~~~- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDS-EQKIRDFFKKAKKS---AKPCVLFIDEIDKLFPKS- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHH-HHHHHHHHHHHHHT---STSEEEEEETGGGTSHHC-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccc-cccccccccccccc---ccceeeeeccchhccccc-
Confidence 68999999999999999999999999999999887 4466665 66777777764321 137999999999999874
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCc
Q 005667 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~ 469 (684)
+...+...+.+++.|+..|+...- ...++++|+|+|.
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~~~~------------------~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDNPSS------------------KNSRVIVIATTNS 111 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHTTTT------------------TSSSEEEEEEESS
T ss_pred --ccccccccccccceeeeccccccc------------------ccccceeEEeeCC
Confidence 223344455689999999983110 1345888888773
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.4e-13 Score=159.11 Aligned_cols=184 Identities=27% Similarity=0.324 Sum_probs=124.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.... -++.+||+||+|||||++|+.+|+.+++.
T Consensus 18 ivGQe~vv~~L~~~l~~~r-------------------------------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~ 66 (647)
T PRK07994 18 VVGQEHVLTALANALDLGR-------------------------------LHHAYLFSGTRGVGKTTIARLLAKGLNCET 66 (647)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 7999999999998885210 02557999999999999999999998652
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.++.+. ..+. ..++++.....+........|++|||+|+|...
T Consensus 67 ~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~V---ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~---- 134 (647)
T PRK07994 67 GITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTKV---EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH---- 134 (647)
T ss_pred CCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCCH---HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH----
Confidence 22222211 1121 234444433222112345679999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...+++||++++...
T Consensus 135 ----------a~NALLKtLEE---------------------Pp~~v~FIL~Tt~~~----------------------- 160 (647)
T PRK07994 135 ----------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ----------------------- 160 (647)
T ss_pred ----------HHHHHHHHHHc---------------------CCCCeEEEEecCCcc-----------------------
Confidence 99999999993 122366666654210
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|. ..+.|.+++.+++.+.+...+. .. .+.++
T Consensus 161 ---------------------------kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~-----------~e--~i~~e 199 (647)
T PRK07994 161 ---------------------------KLPVTILSRC-LQFHLKALDVEQIRQQLEHILQ-----------AE--QIPFE 199 (647)
T ss_pred ---------------------------ccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 1445677784 5899999999999988875321 11 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|+..+ .+..|...++++..+
T Consensus 200 ~~aL~~Ia~~s---~Gs~R~Al~lldqai 225 (647)
T PRK07994 200 PRALQLLARAA---DGSMRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999863 555787777776544
No 101
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.53 E-value=2.3e-14 Score=144.17 Aligned_cols=183 Identities=20% Similarity=0.313 Sum_probs=81.4
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|+||+.+|++|..++.. .+|+||+||||||||++|++++..+-.
T Consensus 4 dI~GQe~aKrAL~iAAaG----------------------------------~h~lLl~GppGtGKTmlA~~l~~lLP~- 48 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG----------------------------------GHHLLLIGPPGTGKTMLARRLPSLLPP- 48 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC----------------------------------C--EEEES-CCCTHHHHHHHHHHCS---
T ss_pred hhcCcHHHHHHHHHHHcC----------------------------------CCCeEEECCCCCCHHHHHHHHHHhCCC-
Confidence 489999999999988751 279999999999999999999988721
Q ss_pred EEEEeccccc----------------ccccc----ccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccC
Q 005667 358 FVIADATTLT----------------QAGYV----GEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 358 fv~v~~s~l~----------------~~gyv----G~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~ 417 (684)
+-....-+.. ..-+. ..+....+..-....++.+..+++|||||||+..+.+.
T Consensus 49 l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~------- 121 (206)
T PF01078_consen 49 LTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS------- 121 (206)
T ss_dssp CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH-------
T ss_pred CchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH-------
Confidence 0000000000 00000 00111111111122456788899999999999999887
Q ss_pred CCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccccccc
Q 005667 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~ 497 (684)
+++.|++.||.+.+.|...+. ...--.++++|+|.|. +.-||........
T Consensus 122 -------vld~Lr~ple~g~v~i~R~~~--------~~~~Pa~f~lv~a~NP-------------cpCG~~~~~~~~C-- 171 (206)
T PF01078_consen 122 -------VLDALRQPLEDGEVTISRAGG--------SVTYPARFLLVAAMNP-------------CPCGYYGDPDNRC-- 171 (206)
T ss_dssp -------HHHHHHHHHHHSBEEEEETTE--------EEEEB--EEEEEEE-S----------------------------
T ss_pred -------HHHHHHHHHHCCeEEEEECCc--------eEEEecccEEEEEecc-------------ccccccccccccc--
Confidence 999999999966666532221 2344557888888774 3344332211111
Q ss_pred CCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHH
Q 005667 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQ 544 (684)
Q Consensus 498 ~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~ee 544 (684)
.+.+.....++.+ +.-+|++|||..+.+++++.+|
T Consensus 172 --~Cs~~~~~~Y~~r----------lsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 172 --RCSPRQIRRYQSR----------LSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp -----------------------------------------------
T ss_pred --ccccccccccccc----------ccccccccccccccccccccCC
Confidence 1222333344433 5688999999999999887754
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.53 E-value=6e-14 Score=165.77 Aligned_cols=192 Identities=21% Similarity=0.296 Sum_probs=133.9
Q ss_pred HhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005667 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 273 ~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..|+. |+|+++.++.+...+... .+.++||+||||||||++|+++|+
T Consensus 179 ~~l~~-~igr~~ei~~~~~~L~~~--------------------------------~~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 179 GKIDP-LIGREDELERTIQVLCRR--------------------------------KKNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CCCCc-ccCcHHHHHHHHHHHhcC--------------------------------CCCceEEECCCCCCHHHHHHHHHH
Confidence 34454 799999999887766411 126899999999999999999999
Q ss_pred Hh----------CCCEEEEecccccc-ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCc
Q 005667 353 YV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (684)
Q Consensus 353 ~l----------~~pfv~v~~s~l~~-~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~ 421 (684)
.+ +..++.++++.+.. ..|.|+- +..+..++..+.. ..+.||||||||.+...+...+++.
T Consensus 226 ~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~~~~--- 297 (731)
T TIGR02639 226 RIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATSGGSM--- 297 (731)
T ss_pred HHHhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCCCccH---
Confidence 87 56788899887763 4577765 6777888775432 3468999999999987532211112
Q ss_pred hHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCc
Q 005667 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (684)
Q Consensus 422 ~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~ 501 (684)
.+++.|+..|+. ..+.+|.++|..+..+.+
T Consensus 298 --~~~~~L~~~l~~-----------------------g~i~~IgaTt~~e~~~~~------------------------- 327 (731)
T TIGR02639 298 --DASNLLKPALSS-----------------------GKLRCIGSTTYEEYKNHF------------------------- 327 (731)
T ss_pred --HHHHHHHHHHhC-----------------------CCeEEEEecCHHHHHHHh-------------------------
Confidence 277888888871 125566666632211111
Q ss_pred hhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHH
Q 005667 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLI 581 (684)
Q Consensus 502 ~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~L 581 (684)
+ ..|.|.+||. .|.+.+++.++..+|++..+. +|.. ...+.+++++++.+
T Consensus 328 ------------~--------~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~----~~e~-----~~~v~i~~~al~~~ 377 (731)
T TIGR02639 328 ------------E--------KDRALSRRFQ-KIDVGEPSIEETVKILKGLKE----KYEE-----FHHVKYSDEALEAA 377 (731)
T ss_pred ------------h--------hhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHH----HHHh-----ccCcccCHHHHHHH
Confidence 1 2478888997 789999999999999986433 2322 12567899999988
Q ss_pred HHhc
Q 005667 582 AKKA 585 (684)
Q Consensus 582 a~~a 585 (684)
+..+
T Consensus 378 ~~ls 381 (731)
T TIGR02639 378 VELS 381 (731)
T ss_pred HHhh
Confidence 8754
No 103
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.53 E-value=1.2e-13 Score=144.67 Aligned_cols=179 Identities=27% Similarity=0.375 Sum_probs=115.7
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.+++ ++||+.+++.|..++.. | -..++||+||||||||..|+++|+.
T Consensus 34 t~de-~~gQe~vV~~L~~a~~~---~-----------------------------~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 34 TFDE-LAGQEHVVQVLKNALLR---R-----------------------------ILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred cHHh-hcchHHHHHHHHHHHhh---c-----------------------------CCceEEeeCCCCCcHhHHHHHHHHH
Confidence 3444 69999999999999861 0 0169999999999999999999999
Q ss_pred hCCC------EEEEeccccccccccccchH--HHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHH
Q 005667 354 VNVP------FVIADATTLTQAGYVGEDVE--SILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 354 l~~p------fv~v~~s~l~~~gyvG~~~~--~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~v 425 (684)
++.+ +...++++......+.+.+. ..++..... ..........|++|||.|.|..+ .
T Consensus 81 L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~-~~~~~~~~fKiiIlDEcdsmtsd--------------a 145 (346)
T KOG0989|consen 81 LNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKR-SDGYPCPPFKIIILDECDSMTSD--------------A 145 (346)
T ss_pred hcCccccccchhhhcccccccccchhhhhcCHHHHhhcccc-ccCCCCCcceEEEEechhhhhHH--------------H
Confidence 9763 33334443332221221110 111111110 11111223479999999999988 9
Q ss_pred HHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhh
Q 005667 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505 (684)
Q Consensus 426 q~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~ 505 (684)
|++|.+.||.. .+++.||+-.|+.+
T Consensus 146 q~aLrr~mE~~---------------------s~~trFiLIcnyls---------------------------------- 170 (346)
T KOG0989|consen 146 QAALRRTMEDF---------------------SRTTRFILICNYLS---------------------------------- 170 (346)
T ss_pred HHHHHHHHhcc---------------------ccceEEEEEcCChh----------------------------------
Confidence 99999999931 12244444434211
Q ss_pred HhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhc
Q 005667 506 TSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 506 ~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~a 585 (684)
.+++++.+|.. -+.|.++..+++...|+..... + .+.+++++++.|++.+
T Consensus 171 ----------------rii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~-----------E--~v~~d~~al~~I~~~S 220 (346)
T KOG0989|consen 171 ----------------RIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASK-----------E--GVDIDDDALKLIAKIS 220 (346)
T ss_pred ----------------hCChHHHhhHH-HhcCCCcchHHHHHHHHHHHHH-----------h--CCCCCHHHHHHHHHHc
Confidence 14566666765 5789999999988877752211 1 7889999999999963
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.2e-13 Score=151.10 Aligned_cols=185 Identities=25% Similarity=0.353 Sum_probs=126.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
|+||+.+++.|..++... ..++++||+||+|||||++|+.+|+.+++
T Consensus 15 liGQe~vv~~L~~a~~~~-------------------------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 15 LVGQDVLVRILRNAFTLN-------------------------------KIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 799999999998877411 01368999999999999999999997642
Q ss_pred ----------------------CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
.++.+|+++ ..|. +.++.+++........+...|++|||+|.|...
T Consensus 64 ~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-----~~~v---ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~---- 131 (491)
T PRK14964 64 GPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-----NTSV---DDIKVILENSCYLPISSKFKVYIIDEVHMLSNS---- 131 (491)
T ss_pred CCCCCCccccHHHHHHhccCCCCEEEEeccc-----CCCH---HHHHHHHHHHHhccccCCceEEEEeChHhCCHH----
Confidence 234444432 2232 234444443322222356789999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ....++||++++ +.++
T Consensus 132 ----------A~NaLLK~LEe---------------------Pp~~v~fIlatt--e~~K-------------------- 158 (491)
T PRK14964 132 ----------AFNALLKTLEE---------------------PAPHVKFILATT--EVKK-------------------- 158 (491)
T ss_pred ----------HHHHHHHHHhC---------------------CCCCeEEEEEeC--ChHH--------------------
Confidence 89999999993 112356666544 1111
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
+.+.+++|.. .+.|.+++.+++.+.+...+.. . .+.++
T Consensus 159 ----------------------------l~~tI~SRc~-~~~f~~l~~~el~~~L~~ia~~-----------E--gi~i~ 196 (491)
T PRK14964 159 ----------------------------IPVTIISRCQ-RFDLQKIPTDKLVEHLVDIAKK-----------E--NIEHD 196 (491)
T ss_pred ----------------------------HHHHHHHhhe-eeecccccHHHHHHHHHHHHHH-----------c--CCCCC
Confidence 1233444543 6899999999998888753221 1 56799
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ +++.|.+.+.++.++.
T Consensus 197 ~eAL~lIa~~s---~GslR~alslLdqli~ 223 (491)
T PRK14964 197 EESLKLIAENS---SGSMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999974 5678998888888764
No 105
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3.1e-13 Score=152.96 Aligned_cols=190 Identities=27% Similarity=0.360 Sum_probs=127.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++||+.+++.|..++... ..++++||+||+|||||++|+++|+.+++..
T Consensus 23 liGq~~vv~~L~~ai~~~-------------------------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 23 LQGQEVLVKVLSYTILND-------------------------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 699999999998877511 0127899999999999999999999986421
Q ss_pred E------------EEeccccc--------c---ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccc
Q 005667 359 V------------IADATTLT--------Q---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 359 v------------~v~~s~l~--------~---~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~ 415 (684)
- ..+|..+. + ....| ...++.+++.+......+...|++|||+|.+...
T Consensus 72 ~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~---vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~----- 143 (507)
T PRK06645 72 LITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTS---VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG----- 143 (507)
T ss_pred ccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCC---HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH-----
Confidence 0 00011110 0 11112 2334455444332222346789999999999876
Q ss_pred cCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccccc
Q 005667 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~ 495 (684)
.+++||+.||. ....++||++++. .++
T Consensus 144 ---------a~naLLk~LEe---------------------pp~~~vfI~aTte--~~k--------------------- 170 (507)
T PRK06645 144 ---------AFNALLKTLEE---------------------PPPHIIFIFATTE--VQK--------------------- 170 (507)
T ss_pred ---------HHHHHHHHHhh---------------------cCCCEEEEEEeCC--hHH---------------------
Confidence 89999999982 1223566665441 111
Q ss_pred ccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH
Q 005667 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e 575 (684)
+.+.+.+|.. .+.|.+++.+++.+++...+. .. .+.+++
T Consensus 171 ---------------------------I~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~-----------~e--gi~ie~ 209 (507)
T PRK06645 171 ---------------------------IPATIISRCQ-RYDLRRLSFEEIFKLLEYITK-----------QE--NLKTDI 209 (507)
T ss_pred ---------------------------hhHHHHhcce-EEEccCCCHHHHHHHHHHHHH-----------Hc--CCCCCH
Confidence 2245566663 789999999999998886322 12 567899
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 576 NALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 576 eAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
++++.|+..+ +++.|.+-+.++.++.
T Consensus 210 eAL~~Ia~~s---~GslR~al~~Ldkai~ 235 (507)
T PRK06645 210 EALRIIAYKS---EGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 9999999964 5678999999988764
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.3e-13 Score=161.58 Aligned_cols=184 Identities=26% Similarity=0.277 Sum_probs=123.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.... ..+.+||+||+|||||++|+.||+.+++.
T Consensus 17 iiGqe~v~~~L~~~i~~~r-------------------------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~ 65 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSGR-------------------------------INHAYLFSGPRGCGKTSSARILARSLNCVE 65 (824)
T ss_pred hcCcHHHHHHHHHHHHhCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhCccc
Confidence 7999999999998885110 01558999999999999999999999642
Q ss_pred -------------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcc
Q 005667 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 358 -------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~ 412 (684)
++.++.. ...|. ..++++.....+........|+||||+|+|...
T Consensus 66 ~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaa-----s~~~V---d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-- 135 (824)
T PRK07764 66 GPTSTPCGECDSCVALAPGGPGSLDVTEIDAA-----SHGGV---DDARELRERAFFAPAESRYKIFIIDEAHMVTPQ-- 135 (824)
T ss_pred CCCCCCCcccHHHHHHHcCCCCCCcEEEeccc-----ccCCH---HHHHHHHHHHHhchhcCCceEEEEechhhcCHH--
Confidence 1222211 11121 223333322211112345679999999999887
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccc
Q 005667 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~ 492 (684)
.++.||+.||. ...+++||++++.. ++
T Consensus 136 ------------a~NaLLK~LEE---------------------pP~~~~fIl~tt~~--~k------------------ 162 (824)
T PRK07764 136 ------------GFNALLKIVEE---------------------PPEHLKFIFATTEP--DK------------------ 162 (824)
T ss_pred ------------HHHHHHHHHhC---------------------CCCCeEEEEEeCCh--hh------------------
Confidence 99999999993 12346666654421 11
Q ss_pred cccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCccee
Q 005667 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~ 572 (684)
+.+.+++|.. ++.|.+++.+++.++|.+.+ +.. .+.
T Consensus 163 ------------------------------Ll~TIrSRc~-~v~F~~l~~~~l~~~L~~il-----------~~E--Gv~ 198 (824)
T PRK07764 163 ------------------------------VIGTIRSRTH-HYPFRLVPPEVMRGYLERIC-----------AQE--GVP 198 (824)
T ss_pred ------------------------------hhHHHHhhee-EEEeeCCCHHHHHHHHHHHH-----------HHc--CCC
Confidence 2234455543 78999999999998887532 222 467
Q ss_pred cCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 573 FTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 573 i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
++++++.+|+..+ ++..|.+.+.+++++
T Consensus 199 id~eal~lLa~~s---gGdlR~Al~eLEKLi 226 (824)
T PRK07764 199 VEPGVLPLVIRAG---GGSVRDSLSVLDQLL 226 (824)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 8999999999974 456899999998876
No 107
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.9e-13 Score=155.38 Aligned_cols=185 Identities=25% Similarity=0.307 Sum_probs=125.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.... .++.+||+||+|||||++|+++|+.+++.
T Consensus 15 ivGq~~i~~~L~~~i~~~r-------------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 63 (584)
T PRK14952 15 VVGQEHVTEPLSSALDAGR-------------------------------INHAYLFSGPRGCGKTSSARILARSLNCAQ 63 (584)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 7999999999998885110 12457999999999999999999988642
Q ss_pred -------------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcc
Q 005667 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 358 -------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~ 412 (684)
++.++++ ...|. +.++++..........+...|++|||+|.|...
T Consensus 64 ~~~~~pCg~C~~C~~i~~~~~~~~dvieidaa-----s~~gv---d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-- 133 (584)
T PRK14952 64 GPTATPCGVCESCVALAPNGPGSIDVVELDAA-----SHGGV---DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-- 133 (584)
T ss_pred CCCCCcccccHHHHHhhcccCCCceEEEeccc-----cccCH---HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH--
Confidence 1222221 11122 223333332222112345679999999999887
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccc
Q 005667 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~ 492 (684)
.+++||+.||. ...+++||++++.. .
T Consensus 134 ------------A~NALLK~LEE---------------------pp~~~~fIL~tte~--~------------------- 159 (584)
T PRK14952 134 ------------GFNALLKIVEE---------------------PPEHLIFIFATTEP--E------------------- 159 (584)
T ss_pred ------------HHHHHHHHHhc---------------------CCCCeEEEEEeCCh--H-------------------
Confidence 99999999992 22346677655411 1
Q ss_pred cccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCccee
Q 005667 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~ 572 (684)
.+.+.+++|. .++.|.+++.+++.+.+...+ +.. .+.
T Consensus 160 -----------------------------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~-----------~~e--gi~ 196 (584)
T PRK14952 160 -----------------------------KVLPTIRSRT-HHYPFRLLPPRTMRALIARIC-----------EQE--GVV 196 (584)
T ss_pred -----------------------------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHH-----------HHc--CCC
Confidence 1335566673 479999999999888776522 112 467
Q ss_pred cCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 573 FTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 573 i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.+|++.+ +++.|.+.+.++.++.
T Consensus 197 i~~~al~~Ia~~s---~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 197 VDDAVYPLVIRAG---GGSPRDTLSVLDQLLA 225 (584)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 8999999999864 5668988888887653
No 108
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.3e-14 Score=147.73 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=119.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---------CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCC--EE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN---------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQG--IV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~---------~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~g--VL 399 (684)
+-+||+||||||||+|++++|+.+. ..++.+++..+. ++|++++ ++.+.++|++-...++. .++ .+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~d-~~~lVfv 254 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVED-RGNLVFV 254 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHhC-CCcEEEE
Confidence 7889999999999999999999883 357889998888 7899998 89999999876544433 333 36
Q ss_pred EEccccccchhccccccCCCCc-hHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHh
Q 005667 400 YIDEVDKITKKAESLNISRDVS-GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 400 fIDEIDkL~~~r~~~~~~~d~~-~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~ 478 (684)
+|||++.+...|.+...+.+.+ +-++.++||..||. .-...|+++++|+|..+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr-------------------lK~~~NvliL~TSNl~~------- 308 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR-------------------LKRYPNVLILATSNLTD------- 308 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-------------------hccCCCEEEEeccchHH-------
Confidence 7899999999886544333333 45799999999991 11345788888877321
Q ss_pred ccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHH
Q 005667 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (684)
Q Consensus 479 r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~k 558 (684)
.+.-.|.+|-|++..+.+++.+.+.+|++-.+.++++
T Consensus 309 -------------------------------------------siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 309 -------------------------------------------SIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred -------------------------------------------HHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 1235688899999999999999999999987777654
No 109
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=6.2e-13 Score=151.56 Aligned_cols=184 Identities=25% Similarity=0.315 Sum_probs=123.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
|+||+.+++.|..++... ..++.+||+||+|||||++|+.+|+.+++
T Consensus 18 iiGq~~~v~~L~~~i~~~-------------------------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~ 66 (546)
T PRK14957 18 VAGQQHALNSLVHALETQ-------------------------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKT 66 (546)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 799999999998887511 01256899999999999999999998854
Q ss_pred ----------------------CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
.++.++.. ...|.+ .++.++.........+...|++|||+|++...
T Consensus 67 ~~~~~pCg~C~sC~~i~~~~~~dlieidaa-----s~~gvd---~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~---- 134 (546)
T PRK14957 67 GVTAEPCNKCENCVAINNNSFIDLIEIDAA-----SRTGVE---ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ---- 134 (546)
T ss_pred CCCCCCCcccHHHHHHhcCCCCceEEeecc-----cccCHH---HHHHHHHHHHhhhhcCCcEEEEEechhhccHH----
Confidence 12222221 122322 22333332221112345679999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.||+.||.. ...++||++++. ..
T Consensus 135 ----------a~naLLK~LEep---------------------p~~v~fIL~Ttd--~~--------------------- 160 (546)
T PRK14957 135 ----------SFNALLKTLEEP---------------------PEYVKFILATTD--YH--------------------- 160 (546)
T ss_pred ----------HHHHHHHHHhcC---------------------CCCceEEEEECC--hh---------------------
Confidence 999999999930 122455554431 10
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|. .++.|.+++.+++.+.+...+. .. .+.++
T Consensus 161 ---------------------------kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~-----------~e--gi~~e 199 (546)
T PRK14957 161 ---------------------------KIPVTILSRC-IQLHLKHISQADIKDQLKIILA-----------KE--NINSD 199 (546)
T ss_pred ---------------------------hhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 1224466676 3899999999999888775321 12 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ ++..|.+-+.++.++
T Consensus 200 ~~Al~~Ia~~s---~GdlR~alnlLek~i 225 (546)
T PRK14957 200 EQSLEYIAYHA---KGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999974 566898888888766
No 110
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=7.2e-13 Score=153.68 Aligned_cols=213 Identities=27% Similarity=0.355 Sum_probs=132.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---- 354 (684)
++||+.+++.+...+... .+.+++|+||||||||++|+++++..
T Consensus 156 iiGqs~~~~~l~~~ia~~--------------------------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~ 203 (615)
T TIGR02903 156 IVGQERAIKALLAKVASP--------------------------------FPQHIILYGPPGVGKTTAARLALEEAKKLK 203 (615)
T ss_pred ceeCcHHHHHHHHHHhcC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 789999999876555311 12689999999999999999998665
Q ss_pred ------CCCEEEEecccccc------ccccccchHHH---HHHHHh------hcchhhHhhcCCEEEEccccccchhccc
Q 005667 355 ------NVPFVIADATTLTQ------AGYVGEDVESI---LYKLLT------VSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 355 ------~~pfv~v~~s~l~~------~gyvG~~~~~~---l~~l~~------~a~~~v~~a~~gVLfIDEIDkL~~~r~~ 413 (684)
+.+|+.++|..+.. ..++|...... ....+. ...+.+..+.+|+|||||++.|...
T Consensus 204 ~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--- 280 (615)
T TIGR02903 204 HTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--- 280 (615)
T ss_pred CCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH---
Confidence 35799999876521 11222110000 011111 1233455678899999999999887
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCe----E-----EeecCceEEEecCCcccHHHHHHhccccCC
Q 005667 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN----I-----QIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~----i-----~IdtsniIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
.|+.|+++|+...+.+.. + ..+..... + .....++++|++++...
T Consensus 281 -----------~Q~~Ll~~Le~~~v~~~~-~-~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~------------- 334 (615)
T TIGR02903 281 -----------LQNKLLKVLEDKRVEFSS-S-YYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP------------- 334 (615)
T ss_pred -----------HHHHHHHHHhhCeEEeec-c-eeccCCcccchhhhhhcccCccceEEEEEeccccc-------------
Confidence 999999999855443311 1 00000000 0 00122345554433100
Q ss_pred CCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHH
Q 005667 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 485 IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l 564 (684)
..+.|.|++|+. .+.|.+++.+|+..|++..+..
T Consensus 335 ------------------------------------~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~--------- 368 (615)
T TIGR02903 335 ------------------------------------EEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEK--------- 368 (615)
T ss_pred ------------------------------------cccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHH---------
Confidence 014577888987 5689999999999999874321
Q ss_pred hhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005667 565 QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 565 ~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~a 606 (684)
. .+.+++++++.|++ |.|+ +|..-++++.++..+
T Consensus 369 --~--~v~ls~eal~~L~~--ys~~--gRraln~L~~~~~~~ 402 (615)
T TIGR02903 369 --I--NVHLAAGVEELIAR--YTIE--GRKAVNILADVYGYA 402 (615)
T ss_pred --c--CCCCCHHHHHHHHH--CCCc--HHHHHHHHHHHHHHH
Confidence 1 34689999999999 5563 365556777665443
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.9e-13 Score=154.35 Aligned_cols=184 Identities=28% Similarity=0.340 Sum_probs=122.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.... -+..+||+||+|||||++|+.+|+.+.+.
T Consensus 18 IiGQe~v~~~L~~ai~~~r-------------------------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~ 66 (624)
T PRK14959 18 VAGQETVKAILSRAAQENR-------------------------------VAPAYLFSGTRGVGKTTIARIFAKALNCET 66 (624)
T ss_pred hcCCHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHhccccC
Confidence 6899999999998885210 02689999999999999999999999642
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.++.. ...+.+.-..+.+.+...+ ......||||||+|.|...
T Consensus 67 ~~~~~pCg~C~sC~~i~~g~hpDv~eId~a-----~~~~Id~iR~L~~~~~~~p---~~g~~kVIIIDEad~Lt~~---- 134 (624)
T PRK14959 67 APTGEPCNTCEQCRKVTQGMHVDVVEIDGA-----SNRGIDDAKRLKEAIGYAP---MEGRYKVFIIDEAHMLTRE---- 134 (624)
T ss_pred CCCCCCCcccHHHHHHhcCCCCceEEEecc-----cccCHHHHHHHHHHHHhhh---hcCCceEEEEEChHhCCHH----
Confidence 2223221 1112221122222222221 2345679999999999877
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.||+.||. ...+++||++++...
T Consensus 135 ----------a~naLLk~LEE---------------------P~~~~ifILaTt~~~----------------------- 160 (624)
T PRK14959 135 ----------AFNALLKTLEE---------------------PPARVTFVLATTEPH----------------------- 160 (624)
T ss_pred ----------HHHHHHHHhhc---------------------cCCCEEEEEecCChh-----------------------
Confidence 89999999982 112366666554210
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|.. ++.|.+++.+++.+++...+. .. .+.++
T Consensus 161 ---------------------------kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~-----------~e--gi~id 199 (624)
T PRK14959 161 ---------------------------KFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLG-----------RE--GVDYD 199 (624)
T ss_pred ---------------------------hhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 02234556654 678999999999988875221 11 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ .+++|..-++++.++
T Consensus 200 ~eal~lIA~~s---~GdlR~Al~lLeqll 225 (624)
T PRK14959 200 PAAVRLIARRA---AGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999974 455788888877643
No 112
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=3.9e-13 Score=155.25 Aligned_cols=185 Identities=26% Similarity=0.337 Sum_probs=125.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+.+++.|..++... ..++.+||+||+|||||++|+++|+.++++-
T Consensus 18 IIGQe~vv~~L~~ai~~~-------------------------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~ 66 (709)
T PRK08691 18 LVGQEHVVKALQNALDEG-------------------------------RLHHAYLLTGTRGVGKTTIARILAKSLNCEN 66 (709)
T ss_pred HcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccC
Confidence 799999999999888511 0126789999999999999999999885431
Q ss_pred ------------------------EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 359 ------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 359 ------------------------v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
+.++.. .-.| ...+++++.............||||||+|.|...
T Consensus 67 ~~~~~pCg~C~sCr~i~~g~~~DvlEidaA-----s~~g---Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~---- 134 (709)
T PRK08691 67 AQHGEPCGVCQSCTQIDAGRYVDLLEIDAA-----SNTG---IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS---- 134 (709)
T ss_pred CCCCCCCcccHHHHHHhccCccceEEEecc-----ccCC---HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH----
Confidence 111111 1111 1345555544322222245679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.||+.||. ...++.||++++...
T Consensus 135 ----------A~NALLKtLEE---------------------Pp~~v~fILaTtd~~----------------------- 160 (709)
T PRK08691 135 ----------AFNAMLKTLEE---------------------PPEHVKFILATTDPH----------------------- 160 (709)
T ss_pred ----------HHHHHHHHHHh---------------------CCCCcEEEEEeCCcc-----------------------
Confidence 89999999982 112355666544110
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|.- .+.|.+++.+++.+.+...+ ... .+.++
T Consensus 161 ---------------------------kL~~TIrSRC~-~f~f~~Ls~eeI~~~L~~Il-----------~kE--gi~id 199 (709)
T PRK08691 161 ---------------------------KVPVTVLSRCL-QFVLRNMTAQQVADHLAHVL-----------DSE--KIAYE 199 (709)
T ss_pred ---------------------------ccchHHHHHHh-hhhcCCCCHHHHHHHHHHHH-----------HHc--CCCcC
Confidence 12344556652 57889999999988887532 112 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ .++.|.+.++++.++.
T Consensus 200 ~eAL~~Ia~~A---~GslRdAlnLLDqaia 226 (709)
T PRK08691 200 PPALQLLGRAA---AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 99999999974 5678999999887664
No 113
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.49 E-value=5.4e-13 Score=144.56 Aligned_cols=227 Identities=22% Similarity=0.316 Sum_probs=138.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~--- 355 (684)
|+||+++|+.|..++.++ ..+++||.||+|||||++||++++.+.
T Consensus 19 ivGq~~~k~al~~~~~~p--------------------------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~ 66 (350)
T CHL00081 19 IVGQEEMKLALILNVIDP--------------------------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIE 66 (350)
T ss_pred HhChHHHHHHHHHhccCC--------------------------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 899999999998877522 127899999999999999999988872
Q ss_pred ----CCEEEEecc-----------------------------cc----cccccccc-chHHHHHHH-HhhcchhhHhhcC
Q 005667 356 ----VPFVIADAT-----------------------------TL----TQAGYVGE-DVESILYKL-LTVSDYNVAAAQQ 396 (684)
Q Consensus 356 ----~pfv~v~~s-----------------------------~l----~~~gyvG~-~~~~~l~~l-~~~a~~~v~~a~~ 396 (684)
.||. .+.. .+ ++...+|. +.+..+..- ..-.++.+..+.+
T Consensus 67 ~~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~ 145 (350)
T CHL00081 67 VVKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANR 145 (350)
T ss_pred ccCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCC
Confidence 2332 0000 00 00111221 111111110 0012455677889
Q ss_pred CEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHH
Q 005667 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 397 gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i 476 (684)
|+||||||+.+.+. +|+.|++.|+...+.+...|.. ... ...+++|+|.|..+
T Consensus 146 GiL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G~s-------~~~-p~rfiviaT~np~e----- 198 (350)
T CHL00081 146 GILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREGIS-------IRH-PARFVLVGSGNPEE----- 198 (350)
T ss_pred CEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCCee-------eec-CCCEEEEeccCccc-----
Confidence 99999999999998 9999999998544443222311 111 22566776665311
Q ss_pred HhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCC-HHHHHHHHhchHH-
Q 005667 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKN- 554 (684)
Q Consensus 477 ~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs-~eel~~Il~~~l~- 554 (684)
..|+++|++||...+.+..++ .++-.+|+++...
T Consensus 199 --------------------------------------------g~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~ 234 (350)
T CHL00081 199 --------------------------------------------GELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSF 234 (350)
T ss_pred --------------------------------------------CCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhcc
Confidence 137789999999999998887 4777777776321
Q ss_pred -----HHHHHH--------HHH--HhhCCcceecCHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHhc
Q 005667 555 -----ALGKQY--------RKM--FQMNGVKLHFTENALRLIAKKAISKN-TGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 555 -----~L~kqy--------~~~--l~~~gi~l~i~eeAl~~La~~ay~~~-~GAR~Lr~iIe~~l~~al~e 609 (684)
...++| .+. .+..--.+.+++++++++++.+...+ -|-|.-..+++-.-..|..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 235 DKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred ccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc
Confidence 001111 000 11112257789999999998765433 36677777766554444433
No 114
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.49 E-value=7.3e-13 Score=133.67 Aligned_cols=163 Identities=19% Similarity=0.278 Sum_probs=109.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
.+++|+||+|||||++|+++++.+ +.+++.++++.+... ....+... ....+|+|||+|.+
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~------~~~~lLvIDdi~~l 102 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA----------DPEVLEGL------EQADLVCLDDVEAI 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh----------HHHHHhhc------ccCCEEEEeChhhh
Confidence 799999999999999999999877 467888898776521 01111111 12369999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
..... .+..|..+++... ..+..+|+|++... .
T Consensus 103 ~~~~~------------~~~~L~~~l~~~~--------------------~~~~~iIits~~~~-~-------------- 135 (226)
T TIGR03420 103 AGQPE------------WQEALFHLYNRVR--------------------EAGGRLLIAGRAAP-A-------------- 135 (226)
T ss_pred cCChH------------HHHHHHHHHHHHH--------------------HcCCeEEEECCCCh-H--------------
Confidence 76410 3667777776100 01123445544210 0
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCC-Ccccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHHHHHH
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGL-IPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f-~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l 564 (684)
+... .+.|.+|+. ..+.+++++.+++..+++..+.
T Consensus 136 --------------------------------~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~---------- 173 (226)
T TIGR03420 136 --------------------------------QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA---------- 173 (226)
T ss_pred --------------------------------HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH----------
Confidence 0011 256667763 6899999999999988864211
Q ss_pred hhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 565 QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 565 ~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
.. .+.++++++++|++ + |+++.|+|+++|+.+-.
T Consensus 174 -~~--~~~~~~~~l~~L~~--~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 174 -RR--GLQLPDEVADYLLR--H-GSRDMGSLMALLDALDR 207 (226)
T ss_pred -Hc--CCCCCHHHHHHHHH--h-ccCCHHHHHHHHHHHHH
Confidence 11 56799999999999 3 89999999999998554
No 115
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.48 E-value=5.7e-13 Score=144.02 Aligned_cols=227 Identities=21% Similarity=0.309 Sum_probs=136.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---- 354 (684)
|+||+++|+.|..++..+ ...+++|.|+||+|||++++++++.+
T Consensus 6 ivgq~~~~~al~~~~~~~--------------------------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~ 53 (337)
T TIGR02030 6 IVGQDEMKLALLLNVIDP--------------------------------KIGGVMVMGDRGTGKSTAVRALAALLPEIK 53 (337)
T ss_pred cccHHHHHHHHHHHhcCC--------------------------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccc
Confidence 799999999887666411 02789999999999999999999887
Q ss_pred ---CCCEE---------EEecc-------------------cc----ccccccccc-hHHHH-HHHHhhcchhhHhhcCC
Q 005667 355 ---NVPFV---------IADAT-------------------TL----TQAGYVGED-VESIL-YKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 355 ---~~pfv---------~v~~s-------------------~l----~~~gyvG~~-~~~~l-~~l~~~a~~~v~~a~~g 397 (684)
+.++- ..+|. ++ ++..++|.. ....+ ..-+...++.+..+.+|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~G 133 (337)
T TIGR02030 54 AVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRG 133 (337)
T ss_pred cccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCC
Confidence 22221 00011 10 011233331 11111 01111234556678889
Q ss_pred EEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHH
Q 005667 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (684)
Q Consensus 398 VLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~ 477 (684)
+||||||+.+.+. +|+.|+++|+...+.+...|. ....+ .++++|+|.|..
T Consensus 134 vL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~-------~~~~~-~r~iviat~np~------- 184 (337)
T TIGR02030 134 ILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGI-------SIRHP-ARFVLVGSGNPE------- 184 (337)
T ss_pred EEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCE-------EEEcC-CCEEEEeccccc-------
Confidence 9999999999887 999999999844333322222 11122 346666665521
Q ss_pred hccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCH-HHHHHHHhchHHH-
Q 005667 478 ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKNA- 555 (684)
Q Consensus 478 ~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~-eel~~Il~~~l~~- 555 (684)
...++++|++||...+.+..+.. ++..+|++.....
T Consensus 185 ------------------------------------------eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~ 222 (337)
T TIGR02030 185 ------------------------------------------EGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYD 222 (337)
T ss_pred ------------------------------------------cCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcc
Confidence 11377899999999888888876 7777777662110
Q ss_pred -----H-----------HHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCC-ChHHHHHHHHHHHHHHHhc
Q 005667 556 -----L-----------GKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENILMDAMYE 609 (684)
Q Consensus 556 -----L-----------~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~-GAR~Lr~iIe~~l~~al~e 609 (684)
. .++... .+..-..+.+++++++++++.+..-+. |-|....++.-.-..|+.+
T Consensus 223 ~~~~~~~~~~~~e~~~~~~~I~~-a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 223 ADPHAFCEKWQTEQEALQAKIVN-AQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred cCchhhhhhhhhhhhcCHHHHHH-HHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 0 011111 111122567899999999986543332 5577766666554444443
No 116
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1e-12 Score=149.02 Aligned_cols=185 Identities=27% Similarity=0.317 Sum_probs=124.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+++++.|..++... ..++.+||+||||||||++|+++|+.+.+.
T Consensus 16 vvGq~~v~~~L~~~i~~~-------------------------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQG-------------------------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hcChHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 799999999999888511 012556999999999999999999988531
Q ss_pred ----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccc
Q 005667 358 ----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 358 ----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~ 415 (684)
++.++.+ +..+ ...++++..............||+|||+|.+...
T Consensus 65 ~~~~~cg~C~sc~~i~~~~h~dv~el~~~-----~~~~---vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~----- 131 (504)
T PRK14963 65 EDPKPCGECESCLAVRRGAHPDVLEIDAA-----SNNS---VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS----- 131 (504)
T ss_pred CCCCCCCcChhhHHHhcCCCCceEEeccc-----ccCC---HHHHHHHHHHHhhccccCCCeEEEEECccccCHH-----
Confidence 2333321 1112 1223343322211111245679999999998766
Q ss_pred cCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccccc
Q 005667 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~ 495 (684)
.++.|++.|+. ...+++||++++...
T Consensus 132 ---------a~naLLk~LEe---------------------p~~~t~~Il~t~~~~------------------------ 157 (504)
T PRK14963 132 ---------AFNALLKTLEE---------------------PPEHVIFILATTEPE------------------------ 157 (504)
T ss_pred ---------HHHHHHHHHHh---------------------CCCCEEEEEEcCChh------------------------
Confidence 89999999982 112355555543110
Q ss_pred ccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH
Q 005667 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e 575 (684)
.+.+.+.+|.. ++.|.+++.+++.+.+...+ +.. .+.+++
T Consensus 158 --------------------------kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~-----------~~e--gi~i~~ 197 (504)
T PRK14963 158 --------------------------KMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLL-----------EAE--GREAEP 197 (504)
T ss_pred --------------------------hCChHHhcceE-EEEecCCCHHHHHHHHHHHH-----------HHc--CCCCCH
Confidence 13455666755 79999999999998887532 122 466799
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 576 NALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 576 eAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++|++.+ ++..|.+.+.+++++.
T Consensus 198 ~Al~~ia~~s---~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 198 EALQLVARLA---DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 9999999974 5668999999988753
No 117
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.4e-13 Score=146.08 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=133.2
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~ 408 (684)
|-+|+|||||||||||++|+-||+..+..+..+...++.+.|--+ -..+.++|. +......+-+|||||+|.+.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qa---VTkiH~lFD---WakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQA---VTKIHKLFD---WAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHH---HHHHHHHHH---HHhhcccceEEEehhhHHHH
Confidence 458999999999999999999999999999989988887644222 233444444 22233456789999999999
Q ss_pred hhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcC
Q 005667 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~ 488 (684)
.+|....++.+ ...+|..+|-. .| + -.+.+++++++|-.+
T Consensus 457 ceRnktymSEa-----qRsaLNAlLfR-------TG----d-------qSrdivLvlAtNrpg----------------- 496 (630)
T KOG0742|consen 457 CERNKTYMSEA-----QRSALNALLFR-------TG----D-------QSRDIVLVLATNRPG----------------- 496 (630)
T ss_pred HHhchhhhcHH-----HHHHHHHHHHH-------hc----c-------cccceEEEeccCCcc-----------------
Confidence 99887655554 55555555531 11 1 123466777666321
Q ss_pred cccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHH---------H
Q 005667 489 APVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK---------Q 559 (684)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~k---------q 559 (684)
.|.-..-+|||.+|.|+-+.+||..+++..+++.++. .
T Consensus 497 ---------------------------------dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~ 543 (630)
T KOG0742|consen 497 ---------------------------------DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGK 543 (630)
T ss_pred ---------------------------------chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCch
Confidence 0223344689999999999999999999998888762 2
Q ss_pred HHHHHhhCCcceecC----HHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 005667 560 YRKMFQMNGVKLHFT----ENALRLIAKKAISKNTGARGLRSLLENI 602 (684)
Q Consensus 560 y~~~l~~~gi~l~i~----eeAl~~La~~ay~~~~GAR~Lr~iIe~~ 602 (684)
+..+|+....++.+. ++.+...+++ ..++..|+|..++-..
T Consensus 544 ~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk--TeGfSGREiakLva~v 588 (630)
T KOG0742|consen 544 WSHLFKKESQRIKLAGFDTGRKCSEAAKK--TEGFSGREIAKLVASV 588 (630)
T ss_pred hhHHHhhhhheeeeccchHHHHHHHHHHh--ccCCcHHHHHHHHHHH
Confidence 444555444455544 4555555553 5677789999998763
No 118
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.47 E-value=7.6e-13 Score=142.85 Aligned_cols=226 Identities=22% Similarity=0.303 Sum_probs=134.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~--- 355 (684)
|+||+++|+.+..++.+. ...|+||.|+||||||++|+++++.+.
T Consensus 10 i~Gq~~~~~~l~~~~~~~--------------------------------~~~~vLl~G~pG~gKT~lar~la~llP~~~ 57 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDP--------------------------------GIGGVLVFGDRGTGKSTAVRALAALLPLIK 57 (334)
T ss_pred hCCHHHHHHHHHHHHhcc--------------------------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcc
Confidence 799999999888655200 016999999999999999999999983
Q ss_pred ----CC--EEEEecc-cc----------------------cccccccc-chHHHH-HHHHhhcchhhHhhcCCEEEEccc
Q 005667 356 ----VP--FVIADAT-TL----------------------TQAGYVGE-DVESIL-YKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 356 ----~p--fv~v~~s-~l----------------------~~~gyvG~-~~~~~l-~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.+ +..+.+. +. ++...+|. +....+ ..-+...++.+..+++|+||||||
T Consensus 58 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEI 137 (334)
T PRK13407 58 AVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEV 137 (334)
T ss_pred hhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecCh
Confidence 21 1111110 00 11113332 111111 011112244555678899999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCC
Q 005667 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 405 DkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
+.+.++ +|+.|++.|+...+.|...|... . ....+++|+|.|..+
T Consensus 138 nrl~~~--------------~q~~Lle~mee~~v~v~r~G~~~-------~-~p~rfiviAt~NP~e------------- 182 (334)
T PRK13407 138 NLLEDH--------------IVDLLLDVAQSGENVVEREGLSI-------R-HPARFVLVGSGNPEE------------- 182 (334)
T ss_pred HhCCHH--------------HHHHHHHHHHcCCeEEEECCeEE-------e-cCCCEEEEecCCccc-------------
Confidence 999888 99999999985554432233211 1 123466666665311
Q ss_pred CCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCH-HHHHHHHhchHH------HHH
Q 005667 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN------ALG 557 (684)
Q Consensus 485 IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~-eel~~Il~~~l~------~L~ 557 (684)
..+.+.|++||...+.+.+... ++..+|+..... .+.
T Consensus 183 ------------------------------------~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~ 226 (334)
T PRK13407 183 ------------------------------------GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFM 226 (334)
T ss_pred ------------------------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhh
Confidence 1266889999998888877766 776777765221 110
Q ss_pred -----------HHHHHHHhhCCcceecCHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHh
Q 005667 558 -----------KQYRKMFQMNGVKLHFTENALRLIAKKAISKN-TGARGLRSLLENILMDAMY 608 (684)
Q Consensus 558 -----------kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~-~GAR~Lr~iIe~~l~~al~ 608 (684)
.+... .+..--.+.+++++++++++.+.... .|.|.--.++...-..|+.
T Consensus 227 ~~~~~~~~~~~~~i~~-a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l 288 (334)
T PRK13407 227 AKWGAEDMQLRGRILG-ARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAF 288 (334)
T ss_pred ccccccccCCHHHHHH-HHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHH
Confidence 11111 11112257789999999998765433 3667666665544444433
No 119
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=8.5e-13 Score=152.23 Aligned_cols=184 Identities=24% Similarity=0.338 Sum_probs=122.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.... -++.+||+||+|||||++|+++|+.+++.
T Consensus 18 viGQe~vv~~L~~~l~~~r-------------------------------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~ 66 (618)
T PRK14951 18 MVGQEHVVQALTNALTQQR-------------------------------LHHAYLFTGTRGVGKTTVSRILAKSLNCQG 66 (618)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 6899999999998885110 12567999999999999999999998641
Q ss_pred ----------------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccch
Q 005667 358 ----------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 358 ----------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~ 409 (684)
++.++.. ...|. +.+++++....+........|++|||+|.|..
T Consensus 67 ~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa-----s~~~V---d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 67 PDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA-----SNRGV---DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN 138 (618)
T ss_pred cccccCCCCCCCCccHHHHHHHcCCCCceeecCcc-----cccCH---HHHHHHHHHHHhCcccCCceEEEEEChhhCCH
Confidence 1222211 11121 23445444322222223457999999999988
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCc
Q 005667 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~ 489 (684)
. .++.||+.||. ...+++||++++.. .+
T Consensus 139 ~--------------a~NaLLKtLEE---------------------PP~~~~fIL~Ttd~--~k--------------- 166 (618)
T PRK14951 139 T--------------AFNAMLKTLEE---------------------PPEYLKFVLATTDP--QK--------------- 166 (618)
T ss_pred H--------------HHHHHHHhccc---------------------CCCCeEEEEEECCc--hh---------------
Confidence 7 89999999982 11235566554311 00
Q ss_pred ccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCc
Q 005667 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi 569 (684)
+.+.+++|. .++.|.+++.+++.+.+.+.+. ..
T Consensus 167 ---------------------------------il~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~-----------~e-- 199 (618)
T PRK14951 167 ---------------------------------VPVTVLSRC-LQFNLRPMAPETVLEHLTQVLA-----------AE-- 199 (618)
T ss_pred ---------------------------------hhHHHHHhc-eeeecCCCCHHHHHHHHHHHHH-----------Hc--
Confidence 223455665 3799999999999888875321 12
Q ss_pred ceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 570 ~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
.+.++++++++|++.+ .++.|.+.++++..+
T Consensus 200 gi~ie~~AL~~La~~s---~GslR~al~lLdq~i 230 (618)
T PRK14951 200 NVPAEPQALRLLARAA---RGSMRDALSLTDQAI 230 (618)
T ss_pred CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 5678999999999964 456788888776554
No 120
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.47 E-value=3.9e-12 Score=132.92 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=101.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc-cccccc----cchHHHHHHHH--------------hhcchhh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-QAGYVG----EDVESILYKLL--------------TVSDYNV 391 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~-~~gyvG----~~~~~~l~~l~--------------~~a~~~v 391 (684)
.++||.||||||||++|+++|+.++.+++.++|..-. ...++| +.....+.... ...+...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 6899999999999999999999999999999987432 122222 21111111110 0111112
Q ss_pred HhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCccc
Q 005667 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (684)
Q Consensus 392 ~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~d 471 (684)
....+++|+||||+++.++ +|+.|+.+||+..+.+|+.+.. +..+ ....++.+|+|+|...
T Consensus 102 A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~----~~~i-~~~~~frvIaTsN~~~ 162 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGT----SRYV-DVHPEFRVIFTSNPVE 162 (262)
T ss_pred HHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCC----CceE-ecCCCCEEEEeeCCcc
Confidence 2356789999999999887 9999999999777776543211 1111 1224566788877421
Q ss_pred HHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhc
Q 005667 472 IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 472 Le~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
|. ..+.+.+.|++|+ ..+.+.-++.++..+|+..
T Consensus 163 ---------------~~------------------------------g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 163 ---------------YA------------------------------GVHETQDALLDRL-ITIFMDYPDIDTETAILRA 196 (262)
T ss_pred ---------------cc------------------------------ceecccHHHHhhc-EEEECCCCCHHHHHHHHHH
Confidence 00 0001346788898 4678888899888888875
No 121
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.47 E-value=9.6e-13 Score=153.25 Aligned_cols=221 Identities=22% Similarity=0.299 Sum_probs=138.0
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.|+||+.+|+.|..++.++. ..+|||.|++|||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~~~--------------------------------~g~vli~G~~GtgKs~lar~l~~~lp~~ 52 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDPR--------------------------------IGGVLIRGEKGTAKSTAARGLAALLPPI 52 (633)
T ss_pred hhcChHHHHHHHHHHhhCCC--------------------------------CCeEEEEcCCCCcHHHHHHHHHHhCCCc
Confidence 38999999998877664210 1689999999999999999999988
Q ss_pred --------------------------------CCCEEEEecccccccccccc-chHHHHHH-HHhhcchhhHhhcCCEEE
Q 005667 355 --------------------------------NVPFVIADATTLTQAGYVGE-DVESILYK-LLTVSDYNVAAAQQGIVY 400 (684)
Q Consensus 355 --------------------------------~~pfv~v~~s~l~~~gyvG~-~~~~~l~~-l~~~a~~~v~~a~~gVLf 400 (684)
..||+.+.+.... ..++|. +....+.. -....++.+..+.+||||
T Consensus 53 ~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~ 131 (633)
T TIGR02442 53 DVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSLDIERALREGEKAFQPGLLAEAHRGILY 131 (633)
T ss_pred eeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcccHHHHhhcCCeeecCcceeecCCCeEE
Confidence 2466665544322 334443 21211110 011124556677889999
Q ss_pred EccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcc
Q 005667 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 401 IDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~ 480 (684)
||||+++... +|+.||.+|+...+.|...|.. .. -..++++|+|.|..+
T Consensus 132 lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~-------~~-~~~~~~lIat~np~e--------- 180 (633)
T TIGR02442 132 IDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLS-------VS-HPARFVLIGTMNPEE--------- 180 (633)
T ss_pred eChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCce-------ee-ecCCeEEEEecCCCC---------
Confidence 9999999988 9999999998544333222221 11 224577777765210
Q ss_pred ccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCC-HHHHHHHHhchHH-----
Q 005667 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKN----- 554 (684)
Q Consensus 481 ~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs-~eel~~Il~~~l~----- 554 (684)
..+.++|++||+..|.+.++. .++..+++.....
T Consensus 181 ----------------------------------------g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~ 220 (633)
T TIGR02442 181 ----------------------------------------GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADP 220 (633)
T ss_pred ----------------------------------------CCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCc
Confidence 126688999999888887775 4555666654211
Q ss_pred -HHHHHH----------HHHHhhCCcceecCHHHHHHHHHhcCCCCC-ChHHHHHHHHHH
Q 005667 555 -ALGKQY----------RKMFQMNGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENI 602 (684)
Q Consensus 555 -~L~kqy----------~~~l~~~gi~l~i~eeAl~~La~~ay~~~~-GAR~Lr~iIe~~ 602 (684)
.....| .......--.+.++++++++|++.+...+. |.|....+++-.
T Consensus 221 ~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~A 280 (633)
T TIGR02442 221 EAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAA 280 (633)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 000111 111111122467899999999997655555 567666666543
No 122
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.3e-12 Score=150.09 Aligned_cols=186 Identities=27% Similarity=0.356 Sum_probs=127.4
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|+||+++++.|..++... ..++.+||+||+|||||++|+.+|+.++++
T Consensus 17 ~viGq~~v~~~L~~~i~~~-------------------------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQG-------------------------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred hccCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3799999999999888511 012678999999999999999999998532
Q ss_pred ------------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccc
Q 005667 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~ 413 (684)
++.++++ ...| -..++.+..........+...|++|||+|.|...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa-----s~~~---vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--- 134 (559)
T PRK05563 66 NPPDGEPCNECEICKAITNGSLMDVIEIDAA-----SNNG---VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--- 134 (559)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeEEeecc-----ccCC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---
Confidence 2333321 1112 2234444444332222356689999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccc
Q 005667 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~ 493 (684)
.+++||+.||. ...+++||++++.. +
T Consensus 135 -----------a~naLLKtLEe---------------------pp~~~ifIlatt~~--~-------------------- 160 (559)
T PRK05563 135 -----------AFNALLKTLEE---------------------PPAHVIFILATTEP--H-------------------- 160 (559)
T ss_pred -----------HHHHHHHHhcC---------------------CCCCeEEEEEeCCh--h--------------------
Confidence 89999999983 11236677765411 0
Q ss_pred ccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceec
Q 005667 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i 573 (684)
.+.|.+++|.. .+.|.+++.+++.+.+...+. .. .+.+
T Consensus 161 ----------------------------ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~-----------~e--gi~i 198 (559)
T PRK05563 161 ----------------------------KIPATILSRCQ-RFDFKRISVEDIVERLKYILD-----------KE--GIEY 198 (559)
T ss_pred ----------------------------hCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHH-----------Hc--CCCC
Confidence 13456677765 688999999999888875321 11 5678
Q ss_pred CHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 ~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|+..+ +++.|...+.++.++.
T Consensus 199 ~~~al~~ia~~s---~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 199 EDEALRLIARAA---EGGMRDALSILDQAIS 226 (559)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999964 4678888888887654
No 123
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.45 E-value=2e-12 Score=138.05 Aligned_cols=191 Identities=25% Similarity=0.346 Sum_probs=122.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~--- 355 (684)
++|++.+++.|..++... ...+++|+||||||||++|+++++.+.
T Consensus 17 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSP--------------------------------NLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred hcCCHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 589999999998877410 014799999999999999999999883
Q ss_pred --CCEEEEecccccccc--cc----------cc------chHHHHHHHHhhcchh-hHhhcCCEEEEccccccchhcccc
Q 005667 356 --VPFVIADATTLTQAG--YV----------GE------DVESILYKLLTVSDYN-VAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 356 --~pfv~v~~s~l~~~g--yv----------G~------~~~~~l~~l~~~a~~~-v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
.+++.+++.++.... +. +. .....++.+....... .......+|+|||+|.+...
T Consensus 65 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---- 140 (337)
T PRK12402 65 WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---- 140 (337)
T ss_pred cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH----
Confidence 357788887653110 00 00 0012222222111000 00134579999999999765
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.|+++|+.. ..+..||++++...
T Consensus 141 ----------~~~~L~~~le~~---------------------~~~~~~Il~~~~~~----------------------- 166 (337)
T PRK12402 141 ----------AQQALRRIMEQY---------------------SRTCRFIIATRQPS----------------------- 166 (337)
T ss_pred ----------HHHHHHHHHHhc---------------------cCCCeEEEEeCChh-----------------------
Confidence 788899999820 01133444443110
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.|.+|. ..+.|.+++.+++.+++...+ ... .+.++
T Consensus 167 ---------------------------~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~-----------~~~--~~~~~ 205 (337)
T PRK12402 167 ---------------------------KLIPPIRSRC-LPLFFRAPTDDELVDVLESIA-----------EAE--GVDYD 205 (337)
T ss_pred ---------------------------hCchhhcCCc-eEEEecCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 1235566675 468999999999988887632 122 45689
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.. +++.|.+.+.++...
T Consensus 206 ~~al~~l~~~~---~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 206 DDGLELIAYYA---GGDLRKAILTLQTAA 231 (337)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999964 667888887777543
No 124
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.5e-12 Score=150.06 Aligned_cols=185 Identities=24% Similarity=0.308 Sum_probs=124.0
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+++++.|..++... ..++.+||+||+|+|||++|+++|+.+++.
T Consensus 18 iiGq~~v~~~L~~~i~~~-------------------------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~ 66 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDTG-------------------------------RVAHAFLFTGARGVGKTSTARILAKALNCEQ 66 (576)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCC
Confidence 799999999999888511 012678999999999999999999998542
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.+++. +..|. ..++++..........+...|++|||+|.|...
T Consensus 67 ~~~~~~c~~c~~c~~i~~g~~~d~~eid~~-----s~~~v---~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~---- 134 (576)
T PRK14965 67 GLTAEPCNVCPPCVEITEGRSVDVFEIDGA-----SNTGV---DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN---- 134 (576)
T ss_pred CCCCCCCCccHHHHHHhcCCCCCeeeeecc-----CccCH---HHHHHHHHHHHhccccCCceEEEEEChhhCCHH----
Confidence 2222221 11222 223444333222222345679999999999877
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...+++||++++.. ++
T Consensus 135 ----------a~naLLk~LEe---------------------pp~~~~fIl~t~~~--~k-------------------- 161 (576)
T PRK14965 135 ----------AFNALLKTLEE---------------------PPPHVKFIFATTEP--HK-------------------- 161 (576)
T ss_pred ----------HHHHHHHHHHc---------------------CCCCeEEEEEeCCh--hh--------------------
Confidence 89999999992 12246666655411 11
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
+.+.+++|.. ++.|.+++.+++.+.+...+. .. .+.++
T Consensus 162 ----------------------------l~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~-----------~e--gi~i~ 199 (576)
T PRK14965 162 ----------------------------VPITILSRCQ-RFDFRRIPLQKIVDRLRYIAD-----------QE--GISIS 199 (576)
T ss_pred ----------------------------hhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHH-----------Hh--CCCCC
Confidence 2244555653 688999999998887765221 11 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|+..+ +++.|.+.+.++.++.
T Consensus 200 ~~al~~la~~a---~G~lr~al~~Ldqlia 226 (576)
T PRK14965 200 DAALALVARKG---DGSMRDSLSTLDQVLA 226 (576)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999974 4567888888876553
No 125
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=9.9e-13 Score=150.01 Aligned_cols=185 Identities=25% Similarity=0.353 Sum_probs=122.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.... .++.+||+||+|+|||++|+.+|+.+++.
T Consensus 18 ivGq~~v~~~L~~~i~~~~-------------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 66 (527)
T PRK14969 18 LVGQEHVVRALTNALEQQR-------------------------------LHHAYLFTGTRGVGKTTLARILAKSLNCET 66 (527)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCEEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 7999999999998885110 12567999999999999999999998652
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.++++ ...+ -..+++++.............|++|||+|+|...
T Consensus 67 ~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~-----~~~~---vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~---- 134 (527)
T PRK14969 67 GVTATPCGVCSACLEIDSGRFVDLIEVDAA-----SNTQ---VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS---- 134 (527)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCceeEeecc-----ccCC---HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH----
Confidence 1112211 1111 2234444443322222345679999999999877
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...+++||++++...
T Consensus 135 ----------a~naLLK~LEe---------------------pp~~~~fIL~t~d~~----------------------- 160 (527)
T PRK14969 135 ----------AFNAMLKTLEE---------------------PPEHVKFILATTDPQ----------------------- 160 (527)
T ss_pred ----------HHHHHHHHHhC---------------------CCCCEEEEEEeCChh-----------------------
Confidence 89999999983 112355666544110
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|. .++.|.+++.+++.+.+.+.+ +.. .+.++
T Consensus 161 ---------------------------kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il-----------~~e--gi~~~ 199 (527)
T PRK14969 161 ---------------------------KIPVTVLSRC-LQFNLKQMPPPLIVSHLQHIL-----------EQE--NIPFD 199 (527)
T ss_pred ---------------------------hCchhHHHHH-HHHhcCCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 1223355554 378999999999888776522 122 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ ++..|...+.++.++.
T Consensus 200 ~~al~~la~~s---~Gslr~al~lldqai~ 226 (527)
T PRK14969 200 ATALQLLARAA---AGSMRDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999964 4557888888877654
No 126
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=8.4e-13 Score=156.42 Aligned_cols=217 Identities=21% Similarity=0.299 Sum_probs=154.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~--- 355 (684)
|.|.+.++..|++.|..++......... + .-||+++||+||||||||++|+++|..+.
T Consensus 267 vggl~~~i~~LKEmVl~PLlyPE~f~~~-------~------------itpPrgvL~~GppGTGkTl~araLa~~~s~~~ 327 (1080)
T KOG0732|consen 267 VGGLENYINQLKEMVLLPLLYPEFFDNF-------N------------ITPPRGVLFHGPPGTGKTLMARALAAACSRGN 327 (1080)
T ss_pred cccHHHHHHHHHHHHHhHhhhhhHhhhc-------c------------cCCCcceeecCCCCCchhHHHHhhhhhhcccc
Confidence 7999999999999998776643222110 0 12458999999999999999999998883
Q ss_pred --CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHH
Q 005667 356 --VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 356 --~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
..|+.-+..+.. +.|+|+. +..++.+|+.+.. .++.|||+||||-|++-|.+...+-. ..+..+||.+|
T Consensus 328 ~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k----~qPSIIffdeIdGlapvrSskqEqih---~SIvSTLLaLm 398 (1080)
T KOG0732|consen 328 RKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQK----TQPSIIFFDEIDGLAPVRSSKQEQIH---ASIVSTLLALM 398 (1080)
T ss_pred cccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhc----cCceEEeccccccccccccchHHHhh---hhHHHHHHHhc
Confidence 345555555555 7899998 8899999998753 68999999999999988754332222 23899999999
Q ss_pred hCceeeecCCCCccCCCCCeEEeecCc-eEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhh
Q 005667 434 EGTVVNVPEKGARKHPRGDNIQIDTKD-ILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 434 Eg~~v~Vp~~G~~~~~~~~~i~Idtsn-iIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (684)
+| ++++. +++|.++|..+
T Consensus 399 dG--------------------ldsRgqVvvigATnRpd----------------------------------------- 417 (1080)
T KOG0732|consen 399 DG--------------------LDSRGQVVVIGATNRPD----------------------------------------- 417 (1080)
T ss_pred cC--------------------CCCCCceEEEcccCCcc-----------------------------------------
Confidence 95 23333 55555555322
Q ss_pred ccchHHHHcCCCccc--ccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCC
Q 005667 513 VESSDLIAYGLIPEF--VGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (684)
Q Consensus 513 v~~~dl~~~~f~PeL--l~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~ 590 (684)
...|+| .+|||..+.|+-.+.++..+|+.... ..-.-.+....+.+|++. ..++
T Consensus 418 ---------a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Iht-------------rkw~~~i~~~l~~~la~~--t~gy 473 (1080)
T KOG0732|consen 418 ---------AIDPALRRPGRFDREFYFPLPDVDARAKILDIHT-------------RKWEPPISRELLLWLAEE--TSGY 473 (1080)
T ss_pred ---------ccchhhcCCcccceeEeeeCCchHHHHHHHHHhc-------------cCCCCCCCHHHHHHHHHh--cccc
Confidence 133555 48999999999999999999987421 112345778888888884 5566
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 005667 591 GARGLRSLLENILMDAMY 608 (684)
Q Consensus 591 GAR~Lr~iIe~~l~~al~ 608 (684)
+...|+.+.....+.++.
T Consensus 474 ~gaDlkaLCTeAal~~~~ 491 (1080)
T KOG0732|consen 474 GGADLKALCTEAALIALR 491 (1080)
T ss_pred chHHHHHHHHHHhhhhhc
Confidence 656688777766666554
No 127
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.43 E-value=1.9e-12 Score=146.60 Aligned_cols=249 Identities=17% Similarity=0.227 Sum_probs=139.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
|+||+.+++.+..++. ...+++|+||||||||++|+.++..+..
T Consensus 194 v~Gq~~~~~al~~aa~----------------------------------~g~~vlliG~pGsGKTtlar~l~~llp~~~ 239 (499)
T TIGR00368 194 IKGQQHAKRALEIAAA----------------------------------GGHNLLLFGPPGSGKTMLASRLQGILPPLT 239 (499)
T ss_pred hcCcHHHHhhhhhhcc----------------------------------CCCEEEEEecCCCCHHHHHHHHhcccCCCC
Confidence 7999999988776652 1268999999999999999999876521
Q ss_pred CEEEEecccccc-cc------------cc----ccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCC
Q 005667 357 PFVIADATTLTQ-AG------------YV----GEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 357 pfv~v~~s~l~~-~g------------yv----G~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d 419 (684)
.-..++.+.+.. .+ |. .......+.......++.+..+++|||||||++.+.+.
T Consensus 240 ~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~--------- 310 (499)
T TIGR00368 240 NEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS--------- 310 (499)
T ss_pred CcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH---------
Confidence 001111111100 00 00 00000000000011234566788999999999999887
Q ss_pred CchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCC
Q 005667 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~ 499 (684)
+|+.|++.||...+.|...|... ....++.+|+++|.- ..||........
T Consensus 311 -----~~~~L~~~LE~~~v~i~r~g~~~--------~~pa~frlIaa~Npc-------------pcg~~~~~~~~c---- 360 (499)
T TIGR00368 311 -----VLDALREPIEDGSISISRASAKI--------FYPARFQLVAAMNPC-------------PCGHYGGKNTHC---- 360 (499)
T ss_pred -----HHHHHHHHHHcCcEEEEecCcce--------eccCCeEEEEecCCc-------------ccCcCCCCcccc----
Confidence 99999999996665543322211 123467777777631 223221111000
Q ss_pred CchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHH---------HHhchHHHHHHHHHHHHhhC-Cc
Q 005667 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ---------VLTEPKNALGKQYRKMFQMN-GV 569 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~---------Il~~~l~~L~kqy~~~l~~~-gi 569 (684)
.+......+++. .+..+|++|||..+.+++++.+++.+ |-.+...+...|. ++++.. ++
T Consensus 361 ~c~~~~~~~y~~----------~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~-~R~~~~~~~ 429 (499)
T TIGR00368 361 RCSPQQISRYWN----------KLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQN-IRYEKFANI 429 (499)
T ss_pred cCCHHHHHHHhh----------hccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHhcCCCCC
Confidence 112222223333 36689999999999999998776633 1111111111121 112111 00
Q ss_pred c-------------eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005667 570 K-------------LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 570 ~-------------l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
. ..+++++.+.|.+..-.-+..+|...+++. +...+.++...
T Consensus 430 ~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArTiAdL~g~ 484 (499)
T TIGR00368 430 NKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VARTIADLKEE 484 (499)
T ss_pred cccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHHHhhcCC
Confidence 1 245777777777654445678999999987 45555555443
No 128
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.6e-12 Score=141.95 Aligned_cols=189 Identities=21% Similarity=0.285 Sum_probs=119.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+.+++.|..++.+.. -++.+||+||||||||++|+++|+.+.+.-
T Consensus 18 iiGq~~~~~~L~~~~~~~~-------------------------------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~ 66 (397)
T PRK14955 18 ITAQEHITRTIQNSLRMGR-------------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (397)
T ss_pred ccChHHHHHHHHHHHHhCC-------------------------------cceeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 7999999999988875210 125699999999999999999999996521
Q ss_pred EE----------Eecc-----------------ccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhc
Q 005667 359 VI----------ADAT-----------------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 359 v~----------v~~s-----------------~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r 411 (684)
.. -.|. .+......+ ...++++..........+...|++|||+|.+...
T Consensus 67 ~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~---id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~- 142 (397)
T PRK14955 67 MIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNS---VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA- 142 (397)
T ss_pred CcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCC---HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-
Confidence 00 0000 000001111 1233343333211112345679999999999876
Q ss_pred cccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccc
Q 005667 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~ 491 (684)
.++.|++.||. ....++||++++ +..+
T Consensus 143 -------------~~~~LLk~LEe---------------------p~~~t~~Il~t~--~~~k----------------- 169 (397)
T PRK14955 143 -------------AFNAFLKTLEE---------------------PPPHAIFIFATT--ELHK----------------- 169 (397)
T ss_pred -------------HHHHHHHHHhc---------------------CCCCeEEEEEeC--ChHH-----------------
Confidence 88999999982 011244444433 1111
Q ss_pred ccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcce
Q 005667 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l 571 (684)
+.+.+.+|.. ++.|.+++++++.+.+...+.. . .+
T Consensus 170 -------------------------------l~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~-----------~--g~ 204 (397)
T PRK14955 170 -------------------------------IPATIASRCQ-RFNFKRIPLEEIQQQLQGICEA-----------E--GI 204 (397)
T ss_pred -------------------------------hHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHH-----------c--CC
Confidence 2233444544 6889999999998877753211 1 56
Q ss_pred ecCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 572 HFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 572 ~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
.+++++++.|++.+ +++.|.+.+.+++++
T Consensus 205 ~i~~~al~~l~~~s---~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 205 SVDADALQLIGRKA---QGSMRDAQSILDQVI 233 (397)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 79999999999974 456888888888765
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.2e-12 Score=148.87 Aligned_cols=189 Identities=25% Similarity=0.334 Sum_probs=125.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+.+++.|..++... ..++.+||+||+|||||++|+++|+.+.++-
T Consensus 20 IiGQe~~v~~L~~aI~~~-------------------------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~ 68 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSN-------------------------------KISHAYLFSGPRGTGKTSVAKIFANALNCSH 68 (725)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccc
Confidence 799999999999988511 0126789999999999999999999985531
Q ss_pred EEE---e---cc-------ccc---cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 359 VIA---D---AT-------TLT---QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 359 v~v---~---~s-------~l~---~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
... . |. ++. ..+..|. ..++.+..........+...|++|||+|.|...
T Consensus 69 ~~~~~~pC~~C~~~~~~~~Dvieidaasn~~v---d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~------------ 133 (725)
T PRK07133 69 KTDLLEPCQECIENVNNSLDIIEMDAASNNGV---DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS------------ 133 (725)
T ss_pred cCCCCCchhHHHHhhcCCCcEEEEeccccCCH---HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH------------
Confidence 100 0 00 000 0111122 224444443322222356679999999999876
Q ss_pred HHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
.+++||+.||. ....++||++++.. +
T Consensus 134 --A~NALLKtLEE---------------------PP~~tifILaTte~--~----------------------------- 159 (725)
T PRK07133 134 --AFNALLKTLEE---------------------PPKHVIFILATTEV--H----------------------------- 159 (725)
T ss_pred --HHHHHHHHhhc---------------------CCCceEEEEEcCCh--h-----------------------------
Confidence 89999999993 11235666654411 0
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHH
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La 582 (684)
.+.|.+++|.. ++.|.+++.+++.+.+...+. .. .+.+++++++.|+
T Consensus 160 -------------------KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~-----------ke--gI~id~eAl~~LA 206 (725)
T PRK07133 160 -------------------KIPLTILSRVQ-RFNFRRISEDEIVSRLEFILE-----------KE--NISYEKNALKLIA 206 (725)
T ss_pred -------------------hhhHHHHhhce-eEEccCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHH
Confidence 13356677775 799999999999988875221 12 4678999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHH
Q 005667 583 KKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 583 ~~ay~~~~GAR~Lr~iIe~~l 603 (684)
..+ +++.|.+.+.++.+.
T Consensus 207 ~lS---~GslR~AlslLekl~ 224 (725)
T PRK07133 207 KLS---SGSLRDALSIAEQVS 224 (725)
T ss_pred HHc---CCCHHHHHHHHHHHH
Confidence 974 456788888888754
No 130
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=140.18 Aligned_cols=130 Identities=33% Similarity=0.452 Sum_probs=96.7
Q ss_pred ChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHH
Q 005667 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (684)
Q Consensus 267 ~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~L 346 (684)
....+...+...++|+++++..+..++. ...++||.||||||||++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~----------------------------------~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL----------------------------------AGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH----------------------------------cCCCEEEECCCCccHHHH
Confidence 3445777888889999999998887774 127999999999999999
Q ss_pred HHHHHHHhCCCEEEEecc-ccccccccccchHHHH---HHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 347 AKTLARYVNVPFVIADAT-TLTQAGYVGEDVESIL---YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 347 AraIA~~l~~pfv~v~~s-~l~~~gyvG~~~~~~l---~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
|+++|+.++.+|++++|+ ++.+...+|....... ...+.-.++.+-.+..+|+|+|||++..++
T Consensus 60 a~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------ 127 (329)
T COG0714 60 ARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------ 127 (329)
T ss_pred HHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH------------
Confidence 999999999999999998 4444555555422221 111111222222333369999999999988
Q ss_pred HHHHHHHHHHHhCceeeecCCC
Q 005667 423 EGVQQALLKMLEGTVVNVPEKG 444 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G 444 (684)
+|++||.+|+++.+.++..+
T Consensus 128 --~q~aLl~~l~e~~vtv~~~~ 147 (329)
T COG0714 128 --VQNALLEALEERQVTVPGLT 147 (329)
T ss_pred --HHHHHHHHHhCcEEEECCcC
Confidence 99999999998888875443
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.42 E-value=5.2e-12 Score=134.31 Aligned_cols=191 Identities=17% Similarity=0.239 Sum_probs=123.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++||+.+++.+...+... ..+..+||+||||+|||++|+++++.++.++
T Consensus 23 ~~~~~~~~~~l~~~~~~~-------------------------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 23 CILPAADKETFKSIVKKG-------------------------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred hcCcHHHHHHHHHHHhcC-------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 699999999998887410 0125666699999999999999999998888
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++++ . . +.. ....+.......+. .....||+|||+|.+... ..++.|..+|+..
T Consensus 72 ~~i~~~~-~--~-~~~-i~~~l~~~~~~~~~---~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le~~-- 128 (316)
T PHA02544 72 LFVNGSD-C--R-IDF-VRNRLTRFASTVSL---TGGGKVIIIDEFDRLGLA-------------DAQRHLRSFMEAY-- 128 (316)
T ss_pred eEeccCc-c--c-HHH-HHHHHHHHHHhhcc---cCCCeEEEEECcccccCH-------------HHHHHHHHHHHhc--
Confidence 8888865 1 1 110 11112222111111 135689999999998322 1677788888720
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
..++.||++++...
T Consensus 129 -------------------~~~~~~Ilt~n~~~----------------------------------------------- 142 (316)
T PHA02544 129 -------------------SKNCSFIITANNKN----------------------------------------------- 142 (316)
T ss_pred -------------------CCCceEEEEcCChh-----------------------------------------------
Confidence 12355666665210
Q ss_pred HHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005667 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 ~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~i 598 (684)
.+.|.+++|+. ++.|+.++.++..+++...+..+ ...+... .+.++++++..+++..+ .+.|.+-+.
T Consensus 143 ---~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~----~~~~~~~--~~~i~~~al~~l~~~~~---~d~r~~l~~ 209 (316)
T PHA02544 143 ---GIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVRC----KGILEAE--GVEVDMKVLAALVKKNF---PDFRRTINE 209 (316)
T ss_pred ---hchHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHH----HHHHHhc--CCCCCHHHHHHHHHhcC---CCHHHHHHH
Confidence 14477788886 68899999999988887643333 2223223 55679999999998632 345666666
Q ss_pred HHHH
Q 005667 599 LENI 602 (684)
Q Consensus 599 Ie~~ 602 (684)
++..
T Consensus 210 l~~~ 213 (316)
T PHA02544 210 LQRY 213 (316)
T ss_pred HHHH
Confidence 6643
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.3e-12 Score=145.10 Aligned_cols=185 Identities=28% Similarity=0.356 Sum_probs=125.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++... .-++.+||+||+|+|||++|+++|+.+..+
T Consensus 16 iiGqe~v~~~L~~~I~~g-------------------------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~ 64 (535)
T PRK08451 16 LIGQESVSKTLSLALDNN-------------------------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQ 64 (535)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCC
Confidence 799999999999888511 012567999999999999999999988421
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.++++. ..| -..++++..........+...|++|||+|.|...
T Consensus 65 ~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-----~~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~---- 132 (535)
T PRK08451 65 GPSSTPCDTCIQCQSALENRHIDIIEMDAAS-----NRG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE---- 132 (535)
T ss_pred CCCCCCCcccHHHHHHhhcCCCeEEEecccc-----ccC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH----
Confidence 22222111 111 1334444433211111245679999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...++.||++++..
T Consensus 133 ----------A~NALLK~LEE---------------------pp~~t~FIL~ttd~------------------------ 157 (535)
T PRK08451 133 ----------AFNALLKTLEE---------------------PPSYVKFILATTDP------------------------ 157 (535)
T ss_pred ----------HHHHHHHHHhh---------------------cCCceEEEEEECCh------------------------
Confidence 99999999992 12335566655410
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
..+.|.+++|. .++.|.+++.+++.+.+...+ ... .+.++
T Consensus 158 --------------------------~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il-----------~~E--Gi~i~ 197 (535)
T PRK08451 158 --------------------------LKLPATILSRT-QHFRFKQIPQNSIISHLKTIL-----------EKE--GVSYE 197 (535)
T ss_pred --------------------------hhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 01446778884 489999999999888776532 222 46789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++|++.+ ++..|.+.+.++.++.
T Consensus 198 ~~Al~~Ia~~s---~GdlR~alnlLdqai~ 224 (535)
T PRK08451 198 PEALEILARSG---NGSLRDTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHHc---CCcHHHHHHHHHHHHH
Confidence 99999999964 4568888888887664
No 133
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.42 E-value=1.4e-12 Score=156.16 Aligned_cols=191 Identities=20% Similarity=0.262 Sum_probs=130.1
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.|+. |+||++.++.+...+.+.. ..+++|+||||||||++|+.+|+.
T Consensus 185 ~ld~-~iGr~~ei~~~i~~l~r~~--------------------------------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 185 KIDP-VLGRDDEIRQMIDILLRRR--------------------------------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CCCc-ccCCHHHHHHHHHHHhcCC--------------------------------cCceeEECCCCCCHHHHHHHHHHH
Confidence 4443 7999998888877664111 268999999999999999999988
Q ss_pred hC----------CCEEEEeccccc-cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 354 VN----------VPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 354 l~----------~pfv~v~~s~l~-~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
+. ..++.++.+.+. ...|.|+- +..++.++..... ...+.||||||||.+...++. .++.|
T Consensus 232 i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~-~~~~d--- 303 (852)
T TIGR03345 232 IAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQ-AGQGD--- 303 (852)
T ss_pred HhhCCCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCc-ccccc---
Confidence 62 347777877665 24566664 6677777765421 135689999999999876322 11222
Q ss_pred HHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
+-+.|+..|+. ..+.+|.+++..+..+.
T Consensus 304 --~~n~Lkp~l~~-----------------------G~l~~IgaTT~~e~~~~--------------------------- 331 (852)
T TIGR03345 304 --AANLLKPALAR-----------------------GELRTIAATTWAEYKKY--------------------------- 331 (852)
T ss_pred --HHHHhhHHhhC-----------------------CCeEEEEecCHHHHhhh---------------------------
Confidence 45667777771 12556666663221111
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHH
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La 582 (684)
+ ...|.|.+||. +|.+.+++.++..+|++. +.+.|.. ...+.++++|++.++
T Consensus 332 ----------~--------~~d~AL~rRf~-~i~v~eps~~~~~~iL~~----~~~~~e~-----~~~v~i~d~al~~~~ 383 (852)
T TIGR03345 332 ----------F--------EKDPALTRRFQ-VVKVEEPDEETAIRMLRG----LAPVLEK-----HHGVLILDEAVVAAV 383 (852)
T ss_pred ----------h--------hccHHHHHhCe-EEEeCCCCHHHHHHHHHH----HHHhhhh-----cCCCeeCHHHHHHHH
Confidence 1 14589999996 799999999999999864 3333332 125778999999888
Q ss_pred Hhc
Q 005667 583 KKA 585 (684)
Q Consensus 583 ~~a 585 (684)
+.+
T Consensus 384 ~ls 386 (852)
T TIGR03345 384 ELS 386 (852)
T ss_pred HHc
Confidence 864
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.5e-12 Score=143.06 Aligned_cols=184 Identities=23% Similarity=0.309 Sum_probs=122.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++... ..++.+||+||||+|||++|+++|+.+...
T Consensus 19 iiGq~~~v~~L~~~i~~~-------------------------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~ 67 (451)
T PRK06305 19 ILGQDAVVAVLKNALRFN-------------------------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQN 67 (451)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCC
Confidence 799999999998888510 012678999999999999999999988532
Q ss_pred ------------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccc
Q 005667 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~ 413 (684)
++.++. ....|.+ .++.+.+........+...|++|||+|.+...
T Consensus 68 ~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g-----~~~~gid---~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--- 136 (451)
T PRK06305 68 PTEDQEPCNQCASCKEISSGTSLDVLEIDG-----ASHRGIE---DIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--- 136 (451)
T ss_pred cccCCCCCcccHHHHHHhcCCCCceEEeec-----cccCCHH---HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH---
Confidence 112221 1122222 23332222222112356789999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccc
Q 005667 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~ 493 (684)
.++.|++.||. ...+++||++++.. .
T Consensus 137 -----------~~n~LLk~lEe---------------------p~~~~~~Il~t~~~--~-------------------- 162 (451)
T PRK06305 137 -----------AFNSLLKTLEE---------------------PPQHVKFFLATTEI--H-------------------- 162 (451)
T ss_pred -----------HHHHHHHHhhc---------------------CCCCceEEEEeCCh--H--------------------
Confidence 89999999982 01234555554310 0
Q ss_pred ccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceec
Q 005667 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i 573 (684)
.+.+.+.+|.. ++.|.+++++++.+.+...+. .. .+.+
T Consensus 163 ----------------------------kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~-----------~e--g~~i 200 (451)
T PRK06305 163 ----------------------------KIPGTILSRCQ-KMHLKRIPEETIIDKLALIAK-----------QE--GIET 200 (451)
T ss_pred ----------------------------hcchHHHHhce-EEeCCCCCHHHHHHHHHHHHH-----------Hc--CCCC
Confidence 13356667765 789999999999988775221 11 5668
Q ss_pred CHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 574 ~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
++++++.|+..+ +++.|.+.+.++.++
T Consensus 201 ~~~al~~L~~~s---~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 201 SREALLPIARAA---QGSLRDAESLYDYVV 227 (451)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999974 456788888888754
No 135
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=2.7e-12 Score=146.99 Aligned_cols=184 Identities=27% Similarity=0.366 Sum_probs=123.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
|+||+.+++.|..++... ..++.+||+||+|+|||++|+++|+.+.+
T Consensus 18 IIGQe~iv~~L~~aI~~~-------------------------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 18 IIGQELIKKILVNAILNN-------------------------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 689999999998887411 01267999999999999999999999853
Q ss_pred ----------------------CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 357 ----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
.++.++++ +..|. +.++.+..........+...|++|||+|.|...
T Consensus 67 ~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa-----s~igV---d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~---- 134 (605)
T PRK05896 67 PKDGDCCNSCSVCESINTNQSVDIVELDAA-----SNNGV---DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS---- 134 (605)
T ss_pred CCCCCCCcccHHHHHHHcCCCCceEEeccc-----cccCH---HHHHHHHHHHHhchhhCCcEEEEEechHhCCHH----
Confidence 12222221 11222 223444332222112345679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...+++||++++.. .
T Consensus 135 ----------A~NaLLKtLEE---------------------Pp~~tvfIL~Tt~~--~--------------------- 160 (605)
T PRK05896 135 ----------AWNALLKTLEE---------------------PPKHVVFIFATTEF--Q--------------------- 160 (605)
T ss_pred ----------HHHHHHHHHHh---------------------CCCcEEEEEECCCh--H---------------------
Confidence 89999999982 11235566554310 0
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|.. ++.|.+++.+++...+...+. .. .+.++
T Consensus 161 ---------------------------KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~-----------ke--gi~Is 199 (605)
T PRK05896 161 ---------------------------KIPLTIISRCQ-RYNFKKLNNSELQELLKSIAK-----------KE--KIKIE 199 (605)
T ss_pred ---------------------------hhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 13355666765 789999999999988875321 11 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.+++.+ ++..|.+.+.++.+.
T Consensus 200 ~eal~~La~lS---~GdlR~AlnlLekL~ 225 (605)
T PRK05896 200 DNAIDKIADLA---DGSLRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 99999999964 455888888888754
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=2.7e-12 Score=147.24 Aligned_cols=184 Identities=21% Similarity=0.300 Sum_probs=123.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.+.. .++.+||+||+|+|||++|+++|+.+.+.
T Consensus 18 iiGqe~iv~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~ 66 (563)
T PRK06647 18 LEGQDFVVETLKHSIESNK-------------------------------IANAYIFSGPRGVGKTSSARAFARCLNCVN 66 (563)
T ss_pred ccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhcccc
Confidence 7999999999998885210 12679999999999999999999998542
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.+++.. -.+ -..++.+..........+...|++|||+|.|...
T Consensus 67 ~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-----~~~---vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~---- 134 (563)
T PRK06647 67 GPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-----NTS---VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS---- 134 (563)
T ss_pred CCCCCCCccchHHHHHHcCCCCCeEEecCcc-----cCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH----
Confidence 11111110 011 1233333322211112346679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.+++||+.||. ...+++||++++. +.
T Consensus 135 ----------a~naLLK~LEe---------------------pp~~~vfI~~tte--~~--------------------- 160 (563)
T PRK06647 135 ----------AFNALLKTIEE---------------------PPPYIVFIFATTE--VH--------------------- 160 (563)
T ss_pred ----------HHHHHHHhhcc---------------------CCCCEEEEEecCC--hH---------------------
Confidence 89999999982 1123666665441 11
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+++|.. ++.|.+++.+++.+.+...+. .. .+.++
T Consensus 161 ---------------------------kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~-----------~e--gi~id 199 (563)
T PRK06647 161 ---------------------------KLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCL-----------ED--QIKYE 199 (563)
T ss_pred ---------------------------HhHHHHHHhce-EEEecCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 13355666765 689999999999887765221 12 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
++++++|++.+ ++..|.+.+.+++++
T Consensus 200 ~eAl~lLa~~s---~GdlR~alslLdkli 225 (563)
T PRK06647 200 DEALKWIAYKS---TGSVRDAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999963 456888888888765
No 137
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.41 E-value=4.2e-12 Score=136.75 Aligned_cols=185 Identities=27% Similarity=0.387 Sum_probs=120.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+++++.|..++... ..++.+||+||||+|||++|+++|+.+..+
T Consensus 16 iig~~~~~~~l~~~~~~~-------------------------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~ 64 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKNG-------------------------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQN 64 (355)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 699999999999887511 012678999999999999999999987432
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.++... ..+ -..++.++.........+...||+|||+|.+...
T Consensus 65 ~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~---- 132 (355)
T TIGR02397 65 GPDGEPCNECESCKEINSGSSLDVIEIDAAS-----NNG---VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS---- 132 (355)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----cCC---HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH----
Confidence 22222210 111 1223344433222112245679999999999766
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.||+.+|+. ..+++||++++. +++
T Consensus 133 ----------~~~~Ll~~le~~---------------------~~~~~lIl~~~~--~~~-------------------- 159 (355)
T TIGR02397 133 ----------AFNALLKTLEEP---------------------PEHVVFILATTE--PHK-------------------- 159 (355)
T ss_pred ----------HHHHHHHHHhCC---------------------ccceeEEEEeCC--HHH--------------------
Confidence 889999999820 123555555431 111
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
+.+.+.+|.. .+.|.+++.+++.+++...+. .. .+.++
T Consensus 160 ----------------------------l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~-----------~~--g~~i~ 197 (355)
T TIGR02397 160 ----------------------------IPATILSRCQ-RFDFKRIPLEDIVERLKKILD-----------KE--GIKIE 197 (355)
T ss_pred ----------------------------HHHHHHhhee-EEEcCCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 1234455653 689999999999988876322 12 45789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ +++.|.+.+.++++..
T Consensus 198 ~~a~~~l~~~~---~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 198 DEALELIARAA---DGSLRDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHc---CCChHHHHHHHHHHHh
Confidence 99999999963 4457888888877654
No 138
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.41 E-value=4.2e-12 Score=129.04 Aligned_cols=160 Identities=16% Similarity=0.231 Sum_probs=111.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
.+++|+||+|||||+||+++++.+ +.+++.+++..+... + .. .....+|+|||+|.+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~----------~----~~------~~~~~~liiDdi~~l 102 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA----------F----DF------DPEAELYAVDDVERL 102 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH----------H----hh------cccCCEEEEeChhhc
Confidence 689999999999999999999876 557888887654310 0 00 123469999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
... .+..|+.+++... .....++|++++...
T Consensus 103 ~~~--------------~~~~L~~~~~~~~-------------------~~~~~~vl~~~~~~~---------------- 133 (227)
T PRK08903 103 DDA--------------QQIALFNLFNRVR-------------------AHGQGALLVAGPAAP---------------- 133 (227)
T ss_pred Cch--------------HHHHHHHHHHHHH-------------------HcCCcEEEEeCCCCH----------------
Confidence 665 6778888886210 011233455544210
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccccc--ceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHh
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~ 565 (684)
....+.++|++|+ ...+.+++|++++..+++.... .
T Consensus 134 -------------------------------~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~----~------- 171 (227)
T PRK08903 134 -------------------------------LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA----A------- 171 (227)
T ss_pred -------------------------------HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH----H-------
Confidence 0012457788888 4689999999988777776421 1
Q ss_pred hCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005667 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~a 606 (684)
.. .+.++++++++|++. |+++.|+|+++++.+-..+
T Consensus 172 ~~--~v~l~~~al~~L~~~---~~gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 172 ER--GLQLADEVPDYLLTH---FRRDMPSLMALLDALDRYS 207 (227)
T ss_pred Hc--CCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHHHH
Confidence 11 578999999999993 8889999999999865444
No 139
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=1.9e-12 Score=142.74 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=72.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+++++.|..++....... + .... ..++.+||+||||+|||++|+++|+.+.+.-
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~----------~-----------~~~~-~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADV----------A-----------AAGS-GMTHAWLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred ccChHHHHHHHHHHHHhccccc----------c-----------ccCC-CCCeEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 7999999999999986221100 0 0000 0137899999999999999999999874421
Q ss_pred EE-Eec--------------ccc---ccc-cccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCC
Q 005667 359 VI-ADA--------------TTL---TQA-GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 359 v~-v~~--------------s~l---~~~-gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d 419 (684)
-. ..| .++ .+. ..++ -..++.+++........+...|+||||+|++...
T Consensus 65 ~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~---i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~--------- 132 (394)
T PRK07940 65 PDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIG---VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER--------- 132 (394)
T ss_pred CCCCCCCCCHHHHHHhcCCCCCEEEeccccccCC---HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------
Confidence 00 000 011 000 1111 1234555543322112345679999999999887
Q ss_pred CchHHHHHHHHHHHh
Q 005667 420 VSGEGVQQALLKMLE 434 (684)
Q Consensus 420 ~~~e~vq~~LL~~LE 434 (684)
.+++||+.||
T Consensus 133 -----aanaLLk~LE 142 (394)
T PRK07940 133 -----AANALLKAVE 142 (394)
T ss_pred -----HHHHHHHHhh
Confidence 8899999998
No 140
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.41 E-value=4.5e-12 Score=144.26 Aligned_cols=251 Identities=19% Similarity=0.263 Sum_probs=145.1
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraI 350 (684)
+...+...|+|++.+|+.+.-++...... ... ++ ..-....|+||+|+||||||++|+++
T Consensus 197 l~~si~p~i~G~~~~k~~l~l~l~gg~~~-------~~~------------~~-~~~r~~~~vLL~G~pGtGKs~lar~l 256 (509)
T smart00350 197 LSRSLAPSIYGHEDIKKAILLLLFGGVHK-------NLP------------DG-MKIRGDINILLLGDPGTAKSQLLKYV 256 (509)
T ss_pred HHHhhCccccCcHHHHHHHHHHHhCCCcc-------ccC------------CC-ccccccceEEEeCCCChhHHHHHHHH
Confidence 55667777999999999887766411100 000 00 00011259999999999999999999
Q ss_pred HHHhCC-CEEEE---eccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHH
Q 005667 351 ARYVNV-PFVIA---DATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 351 A~~l~~-pfv~v---~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq 426 (684)
++.... .|+.. ++..+.. ..+ .+ ....-+....+.+..+.+|+++|||++++.+. .|
T Consensus 257 ~~~~~r~~~~~~~~~~~~~l~~-~~~-~~---~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q 317 (509)
T smart00350 257 EKTAPRAVYTTGKGSSAVGLTA-AVT-RD---PETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DR 317 (509)
T ss_pred HHHcCcceEcCCCCCCcCCccc-cce-Ec---cCcceEEecCccEEecCCCEEEEechhhCCHH--------------HH
Confidence 998743 33321 2222221 000 00 00000111123345678899999999999887 99
Q ss_pred HHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhH
Q 005667 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~ 506 (684)
..|+++||...+.|...|... . -..++.+|+|+|... ++++...
T Consensus 318 ~~L~e~me~~~i~i~k~G~~~-------~-l~~~~~viAa~NP~~-------g~y~~~~--------------------- 361 (509)
T smart00350 318 TAIHEAMEQQTISIAKAGITT-------T-LNARCSVLAAANPIG-------GRYDPKL--------------------- 361 (509)
T ss_pred HHHHHHHhcCEEEEEeCCEEE-------E-ecCCcEEEEEeCCCC-------cccCCCc---------------------
Confidence 999999997666654333222 1 123466777776431 1111100
Q ss_pred hHHhhhccchHHHHcCCCcccccccceEEEc-CCCCHHHHHHHHhchHH-------------------HHHHHHHHHHhh
Q 005667 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQVLTEPKN-------------------ALGKQYRKMFQM 566 (684)
Q Consensus 507 ~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f-~pLs~eel~~Il~~~l~-------------------~L~kqy~~~l~~ 566 (684)
.+.+. ..+.|++++|||.++.+ ..++.+.-.+|+++.++ ...++|....+
T Consensus 362 -~~~~n--------~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar- 431 (509)
T smart00350 362 -TPEEN--------IDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAR- 431 (509)
T ss_pred -Chhhc--------cCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHH-
Confidence 01111 23789999999987555 56666665666655321 12334443222
Q ss_pred CCcceecCHHHHHHHHHhcCC-------------CCCChHHHHHHHHHHHHHH
Q 005667 567 NGVKLHFTENALRLIAKKAIS-------------KNTGARGLRSLLENILMDA 606 (684)
Q Consensus 567 ~gi~l~i~eeAl~~La~~ay~-------------~~~GAR~Lr~iIe~~l~~a 606 (684)
..+...+++++.++|.+.... .+...|.|..+|+-.-..|
T Consensus 432 ~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A 484 (509)
T smart00350 432 EKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHA 484 (509)
T ss_pred hcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHH
Confidence 223456899999999875321 1335899999988544333
No 141
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=6.5e-12 Score=136.84 Aligned_cols=190 Identities=25% Similarity=0.334 Sum_probs=123.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+.+++.+...+.+. ..++++||+||||+|||++|+++|+.+..+.
T Consensus 19 iig~~~~~~~l~~~i~~~-------------------------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~ 67 (367)
T PRK14970 19 VVGQSHITNTLLNAIENN-------------------------------HLAQALLFCGPRGVGKTTCARILARKINQPG 67 (367)
T ss_pred cCCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 699999999998888511 0126899999999999999999999885421
Q ss_pred EEEec-------cccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005667 359 VIADA-------TTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 359 v~v~~-------s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
....+ .++......+ ...++.++..+......+...||+|||+|.+... .++.|++
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~---~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll~ 130 (367)
T PRK14970 68 YDDPNEDFSFNIFELDAASNNS---VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFLK 130 (367)
T ss_pred CCCCCCCCCcceEEeccccCCC---HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHHH
Confidence 11100 0111011111 1334444433211111234579999999999766 7899999
Q ss_pred HHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhh
Q 005667 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (684)
.|++ ...+.+||++++..
T Consensus 131 ~le~---------------------~~~~~~~Il~~~~~----------------------------------------- 148 (367)
T PRK14970 131 TLEE---------------------PPAHAIFILATTEK----------------------------------------- 148 (367)
T ss_pred HHhC---------------------CCCceEEEEEeCCc-----------------------------------------
Confidence 9982 01224555554310
Q ss_pred hccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCC
Q 005667 512 TVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG 591 (684)
Q Consensus 512 ~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~G 591 (684)
..+.|.+.+|.. ++.|.+++++++..++...+.. . .+.+++++++.|++.+ +++
T Consensus 149 ---------~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~-----------~--g~~i~~~al~~l~~~~---~gd 202 (367)
T PRK14970 149 ---------HKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVK-----------E--GIKFEDDALHIIAQKA---DGA 202 (367)
T ss_pred ---------ccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHhC---CCC
Confidence 013456666764 6899999999998888753211 1 5678999999999963 456
Q ss_pred hHHHHHHHHHHHH
Q 005667 592 ARGLRSLLENILM 604 (684)
Q Consensus 592 AR~Lr~iIe~~l~ 604 (684)
.|.+.+.+++++.
T Consensus 203 lr~~~~~lekl~~ 215 (367)
T PRK14970 203 LRDALSIFDRVVT 215 (367)
T ss_pred HHHHHHHHHHHHH
Confidence 8999998888763
No 142
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.9e-12 Score=145.45 Aligned_cols=190 Identities=23% Similarity=0.335 Sum_probs=123.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++||+.+++.|..++.... -..++||+||+|+|||++|+++|+.+.+..
T Consensus 18 liGq~~i~~~L~~~l~~~r-------------------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~ 66 (620)
T PRK14948 18 LVGQEAIATTLKNALISNR-------------------------------IAPAYLFTGPRGTGKTSSARILAKSLNCLN 66 (620)
T ss_pred ccChHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCChHHHHHHHHHHhcCCC
Confidence 7999999999998885210 026899999999999999999999986521
Q ss_pred EE----Eecc--------------cccc-ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCC
Q 005667 359 VI----ADAT--------------TLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 359 v~----v~~s--------------~l~~-~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d 419 (684)
.. -.|. ++.+ ....... ...+++++..+......+...|++|||+|.|...
T Consensus 67 ~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~--------- 136 (620)
T PRK14948 67 SDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA--------- 136 (620)
T ss_pred cCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH---------
Confidence 00 0000 0000 0001111 2355666554432222345679999999999876
Q ss_pred CchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCC
Q 005667 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~ 499 (684)
.+++||+.||. ...+++||++++. .+
T Consensus 137 -----a~naLLK~LEe---------------------Pp~~tvfIL~t~~--~~-------------------------- 162 (620)
T PRK14948 137 -----AFNALLKTLEE---------------------PPPRVVFVLATTD--PQ-------------------------- 162 (620)
T ss_pred -----HHHHHHHHHhc---------------------CCcCeEEEEEeCC--hh--------------------------
Confidence 89999999992 1123566665441 10
Q ss_pred CchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHH
Q 005667 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALR 579 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~ 579 (684)
.+.|.+++|.. .+.|.+++.+++.+.+...+. .. .+.++++++.
T Consensus 163 ----------------------~llpTIrSRc~-~~~f~~l~~~ei~~~L~~ia~-----------ke--gi~is~~al~ 206 (620)
T PRK14948 163 ----------------------RVLPTIISRCQ-RFDFRRIPLEAMVQHLSEIAE-----------KE--SIEIEPEALT 206 (620)
T ss_pred ----------------------hhhHHHHhhee-EEEecCCCHHHHHHHHHHHHH-----------Hh--CCCCCHHHHH
Confidence 13355666764 688999999888877664211 11 4668999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHH
Q 005667 580 LIAKKAISKNTGARGLRSLLENI 602 (684)
Q Consensus 580 ~La~~ay~~~~GAR~Lr~iIe~~ 602 (684)
.|++.+ +++.|.+.+.++.+
T Consensus 207 ~La~~s---~G~lr~A~~lLekl 226 (620)
T PRK14948 207 LVAQRS---QGGLRDAESLLDQL 226 (620)
T ss_pred HHHHHc---CCCHHHHHHHHHHH
Confidence 999964 45678888888764
No 143
>PRK04195 replication factor C large subunit; Provisional
Probab=99.39 E-value=1.2e-11 Score=139.78 Aligned_cols=187 Identities=22% Similarity=0.307 Sum_probs=119.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++|++++++.|...+..+.. + .++.++||+||||||||++|+++|+.++.++
T Consensus 16 lvg~~~~~~~l~~~l~~~~~------------g----------------~~~~~lLL~GppG~GKTtla~ala~el~~~~ 67 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLK------------G----------------KPKKALLLYGPPGVGKTSLAHALANDYGWEV 67 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhc------------C----------------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 69999999999998853211 0 1137999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcch--hhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDY--NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~--~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+.+++++... ...+......... .+......||+|||+|.+....+ .+.+++|++.++..
T Consensus 68 ielnasd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----------~~~~~aL~~~l~~~ 129 (482)
T PRK04195 68 IELNASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----------RGGARAILELIKKA 129 (482)
T ss_pred EEEccccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----------hhHHHHHHHHHHcC
Confidence 9999876542 1122222211110 01012467999999999975311 12678888888710
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccch
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
+..+||++|...
T Consensus 130 -----------------------~~~iIli~n~~~--------------------------------------------- 141 (482)
T PRK04195 130 -----------------------KQPIILTANDPY--------------------------------------------- 141 (482)
T ss_pred -----------------------CCCEEEeccCcc---------------------------------------------
Confidence 122334433110
Q ss_pred HHHHcCCCc-ccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHH
Q 005667 517 DLIAYGLIP-EFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 517 dl~~~~f~P-eLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~L 595 (684)
...+ .+++| ...|.|.+++.+++..++...+. .. .+.+++++++.|++.+ ++..|.+
T Consensus 142 -----~~~~k~Lrsr-~~~I~f~~~~~~~i~~~L~~i~~-----------~e--gi~i~~eaL~~Ia~~s---~GDlR~a 199 (482)
T PRK04195 142 -----DPSLRELRNA-CLMIEFKRLSTRSIVPVLKRICR-----------KE--GIECDDEALKEIAERS---GGDLRSA 199 (482)
T ss_pred -----ccchhhHhcc-ceEEEecCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHc---CCCHHHH
Confidence 0112 33334 34799999999999988875321 12 5668999999999963 3445555
Q ss_pred HHHHHH
Q 005667 596 RSLLEN 601 (684)
Q Consensus 596 r~iIe~ 601 (684)
-+.++.
T Consensus 200 in~Lq~ 205 (482)
T PRK04195 200 INDLQA 205 (482)
T ss_pred HHHHHH
Confidence 444443
No 144
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.4e-11 Score=139.25 Aligned_cols=189 Identities=28% Similarity=0.356 Sum_probs=120.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++... ..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 18 iiGq~~i~~~L~~~i~~~-------------------------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~ 66 (486)
T PRK14953 18 VIGQEIVVRILKNAVKLQ-------------------------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLN 66 (486)
T ss_pred ccChHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcC
Confidence 799999999999888511 012567899999999999999999988531
Q ss_pred ------EEE-Eeccccc-----------cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCC
Q 005667 358 ------FVI-ADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 358 ------fv~-v~~s~l~-----------~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d 419 (684)
.-. .+|..+. .+...|.+.-..+.+.....+ ..+...|++|||+|.+...
T Consensus 67 ~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P---~~~~~KVvIIDEad~Lt~~--------- 134 (486)
T PRK14953 67 PQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTP---IKGKYKVYIIDEAHMLTKE--------- 134 (486)
T ss_pred CCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCc---ccCCeeEEEEEChhhcCHH---------
Confidence 100 0111110 001122221122222222222 2345689999999999876
Q ss_pred CchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCC
Q 005667 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~ 499 (684)
.+++||+.|+.. ...++||++++. +++
T Consensus 135 -----a~naLLk~LEep---------------------p~~~v~Il~tt~--~~k------------------------- 161 (486)
T PRK14953 135 -----AFNALLKTLEEP---------------------PPRTIFILCTTE--YDK------------------------- 161 (486)
T ss_pred -----HHHHHHHHHhcC---------------------CCCeEEEEEECC--HHH-------------------------
Confidence 889999999820 112445554431 111
Q ss_pred CchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHH
Q 005667 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALR 579 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~ 579 (684)
+.+.+.+|.. ++.|.+++.+++.+.+...+. .. .+.+++++++
T Consensus 162 -----------------------l~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k-----------~e--gi~id~~al~ 204 (486)
T PRK14953 162 -----------------------IPPTILSRCQ-RFIFSKPTKEQIKEYLKRICN-----------EE--KIEYEEKALD 204 (486)
T ss_pred -----------------------HHHHHHHhce-EEEcCCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHH
Confidence 1234455654 689999999999988875322 22 4678999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHH
Q 005667 580 LIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 580 ~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
.|++.+ +++.|.+.+.++.++
T Consensus 205 ~La~~s---~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 205 LLAQAS---EGGMRDAASLLDQAS 225 (486)
T ss_pred HHHHHc---CCCHHHHHHHHHHHH
Confidence 999863 466898888888765
No 145
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.5e-12 Score=143.43 Aligned_cols=214 Identities=23% Similarity=0.264 Sum_probs=147.7
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.+.|......++.+.+..+........ +. -..+++++|++||||||||.+++++|++.+..
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~----s~---------------g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~ 245 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFK----SI---------------GIKPPRGLLLYGPPGTGKTFLVRAVANEYGAF 245 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhh----hc---------------CCCCCCCccccCCCCCChHHHHHHHHHHhCce
Confidence 467888888888888875443211110 00 01235899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhc-CCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQ-QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~-~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
++.+++.++. .++.|+. +..++..|+.+.. .+ +.+|||||+|.+++++..... -..++..+|+.+|+|-
T Consensus 246 ~~~i~~peli-~k~~gEt-e~~LR~~f~~a~k----~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~ 315 (693)
T KOG0730|consen 246 LFLINGPELI-SKFPGET-ESNLRKAFAEALK----FQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGL 315 (693)
T ss_pred eEecccHHHH-Hhcccch-HHHHHHHHHHHhc----cCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhC
Confidence 9999999998 6688888 7889999988653 34 899999999999998654322 1334899999999941
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccch
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
. ...++++|.+.+..+
T Consensus 316 ~-------------------~~~~vivl~atnrp~--------------------------------------------- 331 (693)
T KOG0730|consen 316 K-------------------PDAKVIVLAATNRPD--------------------------------------------- 331 (693)
T ss_pred c-------------------CcCcEEEEEecCCcc---------------------------------------------
Confidence 1 223456666555321
Q ss_pred HHHHcCCCcccc-cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHH
Q 005667 517 DLIAYGLIPEFV-GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 517 dl~~~~f~PeLl-~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~L 595 (684)
.+.|.++ +|||.-+.+.-++..+..+|++.....+ .+. ++..+..++.. ..++-...|
T Consensus 332 -----sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~-------------~~~-~~~~l~~iA~~--thGyvGaDL 390 (693)
T KOG0730|consen 332 -----SLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM-------------NLL-SDVDLEDIAVS--THGYVGADL 390 (693)
T ss_pred -----ccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc-------------CCc-chhhHHHHHHH--ccchhHHHH
Confidence 2446666 6999999999999888888887532111 222 56667777774 223333455
Q ss_pred HHHHHHHHHH
Q 005667 596 RSLLENILMD 605 (684)
Q Consensus 596 r~iIe~~l~~ 605 (684)
..++......
T Consensus 391 ~~l~~ea~~~ 400 (693)
T KOG0730|consen 391 AALCREASLQ 400 (693)
T ss_pred HHHHHHHHHH
Confidence 5555444333
No 146
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=7.8e-12 Score=144.28 Aligned_cols=190 Identities=26% Similarity=0.309 Sum_probs=125.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+.+++.|..++... ..+..+||+||+|+|||++|+++|+.+++..
T Consensus 26 liGq~~~v~~L~~~~~~g-------------------------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 26 LIGQEAMVRTLTNAFETG-------------------------------RIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred hcCcHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 799999999999887511 0136899999999999999999999986432
Q ss_pred EEEe-------------cccc-----------ccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 359 VIAD-------------ATTL-----------TQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 359 v~v~-------------~s~l-----------~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
...+ |..+ ......|. ..+++++.........+...|++|||+|.|...
T Consensus 75 ~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gv---d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~---- 147 (598)
T PRK09111 75 PDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGV---DDIREIIESVRYRPVSARYKVYIIDEVHMLSTA---- 147 (598)
T ss_pred ccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCH---HHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH----
Confidence 1111 1001 00112222 234444443322222356689999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.||+.||. ....++||++++. .++
T Consensus 148 ----------a~naLLKtLEe---------------------Pp~~~~fIl~tte--~~k-------------------- 174 (598)
T PRK09111 148 ----------AFNALLKTLEE---------------------PPPHVKFIFATTE--IRK-------------------- 174 (598)
T ss_pred ----------HHHHHHHHHHh---------------------CCCCeEEEEEeCC--hhh--------------------
Confidence 89999999982 1122555554431 111
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
+.+.+++|.. ++.|.+++.+++.+.+...+. .. .+.++
T Consensus 175 ----------------------------ll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~-----------ke--gi~i~ 212 (598)
T PRK09111 175 ----------------------------VPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAA-----------KE--GVEVE 212 (598)
T ss_pred ----------------------------hhHHHHhhee-EEEecCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 2234555653 799999999999988875321 11 56789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|+..+ ++..|.+.+.++.++.
T Consensus 213 ~eAl~lIa~~a---~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 213 DEALALIARAA---EGSVRDGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 99999999964 5568888888887653
No 147
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=4.2e-12 Score=136.05 Aligned_cols=160 Identities=14% Similarity=0.210 Sum_probs=107.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-ccccccchH-----HHHHHHHhhcchhhHhhcCCEEEEccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVE-----SILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~-~gyvG~~~~-----~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
+++||.||||||||++|+.+|+.++.++++++++.... ..++|.... .... .+...+.......+++|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~-~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQIT-EFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCccee-EEecCcchhHHhCCeEEEechh
Confidence 78999999999999999999999999999999985543 346665311 0000 1111111122345678999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 405 DkL~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|.+.++ +++.|+.+|| +..+.+++.+.... .-.++.+|+|.|..+.-+ ..
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~--------~hp~FrviAT~Np~g~Gd-------~~ 194 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIR--------AHPAFRLFATANTIGLGD-------TT 194 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCceEec--------CCCCeEEEEeeCCCCcCC-------CC
Confidence 999888 9999999999 66777765443222 223577778877532000 00
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhc
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
.+ |.. -+.+.+.+++||-.++.+.-++.++-.+|+..
T Consensus 195 G~-y~G------------------------------t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 195 GL-YHG------------------------------TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred cc-eee------------------------------eecCCHHHHhheeeEeeCCCCCHHHHHHHHHh
Confidence 00 000 01256889999998888999999888888865
No 148
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.38 E-value=1.4e-11 Score=126.88 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=53.7
Q ss_pred CCcccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005667 523 LIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 523 f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe 600 (684)
+.|+|++|+. .++.+.+++.+++.+++++.. ..+ .+.++++++++|+++. +..+|.|..+++
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a-----------~~~--~~~l~~~v~~~L~~~~---~~d~r~l~~~l~ 211 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA-----------RLR--GFELPEDVGRFLLKRL---DREMRTLFMTLD 211 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHhh---cCCHHHHHHHHH
Confidence 3488999994 689999999999999987521 111 4789999999999974 667899999999
Q ss_pred HHHHHH
Q 005667 601 NILMDA 606 (684)
Q Consensus 601 ~~l~~a 606 (684)
++-..+
T Consensus 212 ~l~~~~ 217 (235)
T PRK08084 212 QLDRAS 217 (235)
T ss_pred HHHHHH
Confidence 864333
No 149
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.37 E-value=1.6e-11 Score=137.22 Aligned_cols=232 Identities=16% Similarity=0.245 Sum_probs=137.3
Q ss_pred hHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHH
Q 005667 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (684)
Q Consensus 268 ~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LA 347 (684)
...+.+.|.+.|+|++++++.+..++. ...++||.||||||||++|
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal----------------------------------ag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc----------------------------------cCCCEEEECCCChhHHHHH
Confidence 345889999999999999999988773 1279999999999999999
Q ss_pred HHHHHHhCC--CEEEEeccccccccccccc-hHHHH-HHHHh-hcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 348 KTLARYVNV--PFVIADATTLTQAGYVGED-VESIL-YKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 348 raIA~~l~~--pfv~v~~s~l~~~gyvG~~-~~~~l-~~l~~-~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
++++..++. +|....+.-.++...+|.. ....- ...+. ...+.+..+ .+||+|||.+++++
T Consensus 57 raLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A--~lLfLDEI~rasp~------------ 122 (498)
T PRK13531 57 RRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEA--EIVFLDEIWKAGPA------------ 122 (498)
T ss_pred HHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccc--cEEeecccccCCHH------------
Confidence 999998743 5555544311223344431 10000 01111 111112112 38999999999988
Q ss_pred HHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
+|++||.+|+++.+++ | ++ .....-.++++++| +|.+
T Consensus 123 --~QsaLLeam~Er~~t~---g------~~--~~~lp~rfiv~ATN--~LPE---------------------------- 159 (498)
T PRK13531 123 --ILNTLLTAINERRFRN---G------AH--EEKIPMRLLVTASN--ELPE---------------------------- 159 (498)
T ss_pred --HHHHHHHHHHhCeEec---C------Ce--EEeCCCcEEEEECC--CCcc----------------------------
Confidence 9999999998666653 1 22 22223344444444 1110
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCC-HHHHHHHHhchHHH----------H-HHHHHHHHhhCCcc
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKNA----------L-GKQYRKMFQMNGVK 570 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs-~eel~~Il~~~l~~----------L-~kqy~~~l~~~gi~ 570 (684)
...+.+++++||-..+.+++++ +++..+++...... + ..++.. +...-..
T Consensus 160 -----------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~-lq~~v~~ 221 (498)
T PRK13531 160 -----------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQ-WQKEIGK 221 (498)
T ss_pred -----------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHH-HHHHhcc
Confidence 0125578888886678888886 45656676532100 0 011111 1111226
Q ss_pred eecCHHHHHHHHHhcC----CC---CCChHHHHHHHHHHHHHHHh
Q 005667 571 LHFTENALRLIAKKAI----SK---NTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 571 l~i~eeAl~~La~~ay----~~---~~GAR~Lr~iIe~~l~~al~ 608 (684)
+.+++.+++++.+..- .. ...-|....++.-+=..|+.
T Consensus 222 V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l 266 (498)
T PRK13531 222 ITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFF 266 (498)
T ss_pred eeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 7789999999887642 11 13457766666644444443
No 150
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.37 E-value=2.1e-12 Score=145.51 Aligned_cols=191 Identities=26% Similarity=0.345 Sum_probs=135.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.+... .+.+||.||-|||||++||.+|+.+++.
T Consensus 18 vvGQe~v~~~L~nal~~~ri-------------------------------~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 18 VVGQEHVVKTLSNALENGRI-------------------------------AHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred hcccHHHHHHHHHHHHhCcc-------------------------------hhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 69999999999999962211 2789999999999999999999999653
Q ss_pred ------EEEE-eccccc--------c---ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCC
Q 005667 358 ------FVIA-DATTLT--------Q---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 358 ------fv~v-~~s~l~--------~---~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d 419 (684)
...+ .|..+. + +.-.|- +-++++.+...+........|++|||+|.|...
T Consensus 67 ~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gV---ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~--------- 134 (515)
T COG2812 67 GPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGV---DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ--------- 134 (515)
T ss_pred CCCCCcchhhhhhHhhhcCCcccchhhhhhhccCh---HHHHHHHHHhccCCccccceEEEEecHHhhhHH---------
Confidence 1111 011111 1 112232 345666666555555677889999999999988
Q ss_pred CchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCC
Q 005667 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~ 499 (684)
..++||+.+|+ ...+++||++++-.
T Consensus 135 -----afNALLKTLEE---------------------PP~hV~FIlATTe~----------------------------- 159 (515)
T COG2812 135 -----AFNALLKTLEE---------------------PPSHVKFILATTEP----------------------------- 159 (515)
T ss_pred -----HHHHHhccccc---------------------CccCeEEEEecCCc-----------------------------
Confidence 99999999983 34568899887621
Q ss_pred CchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHH
Q 005667 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALR 579 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~ 579 (684)
.. .++..++|.. .+.|..++.+++..-+...+.. ..+.++++++.
T Consensus 160 ---~K------------------ip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~-------------E~I~~e~~aL~ 204 (515)
T COG2812 160 ---QK------------------IPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDK-------------EGINIEEDALS 204 (515)
T ss_pred ---Cc------------------Cchhhhhccc-cccccCCCHHHHHHHHHHHHHh-------------cCCccCHHHHH
Confidence 11 3344445544 5789999999888777653211 17889999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHH
Q 005667 580 LIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 580 ~La~~ay~~~~GAR~Lr~iIe~~l~~ 605 (684)
.|++.+ .++.|...+++..++..
T Consensus 205 ~ia~~a---~Gs~RDalslLDq~i~~ 227 (515)
T COG2812 205 LIARAA---EGSLRDALSLLDQAIAF 227 (515)
T ss_pred HHHHHc---CCChhhHHHHHHHHHHc
Confidence 999974 77789999998876643
No 151
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.4e-11 Score=142.46 Aligned_cols=190 Identities=21% Similarity=0.278 Sum_probs=121.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+.+++.|..++.+.. -++.+||+||+|||||++|+.+|+.+.+.-
T Consensus 18 ivGQe~i~~~L~~~i~~~r-------------------------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~ 66 (620)
T PRK14954 18 ITAQEHITHTIQNSLRMDR-------------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (620)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 7999999999988874110 026799999999999999999999996521
Q ss_pred EE----------Eec------c-----------ccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhc
Q 005667 359 VI----------ADA------T-----------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 359 v~----------v~~------s-----------~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r 411 (684)
-. -.| . .+......+ ...++.+.+........+...|++|||+|.+...
T Consensus 67 ~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~---vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~- 142 (620)
T PRK14954 67 MIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNS---VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA- 142 (620)
T ss_pred cCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCC---HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-
Confidence 00 000 0 010011111 1234444333211112345679999999999876
Q ss_pred cccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccc
Q 005667 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~ 491 (684)
.+++||+.||. ....++||++++. ..+
T Consensus 143 -------------a~naLLK~LEe---------------------Pp~~tv~IL~t~~--~~k----------------- 169 (620)
T PRK14954 143 -------------AFNAFLKTLEE---------------------PPPHAIFIFATTE--LHK----------------- 169 (620)
T ss_pred -------------HHHHHHHHHhC---------------------CCCCeEEEEEeCC--hhh-----------------
Confidence 89999999992 1112445544331 111
Q ss_pred ccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcce
Q 005667 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l 571 (684)
+.+.+.+|.. ++.|.+++.+++...+...+. .. .+
T Consensus 170 -------------------------------Ll~TI~SRc~-~vef~~l~~~ei~~~L~~i~~-----------~e--gi 204 (620)
T PRK14954 170 -------------------------------IPATIASRCQ-RFNFKRIPLDEIQSQLQMICR-----------AE--GI 204 (620)
T ss_pred -------------------------------hhHHHHhhce-EEecCCCCHHHHHHHHHHHHH-----------Hc--CC
Confidence 2234455543 799999999998887764211 11 56
Q ss_pred ecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 572 HFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 572 ~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
.++++++++|++.+ +++.|.+.+.+++++.
T Consensus 205 ~I~~eal~~La~~s---~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 205 QIDADALQLIARKA---QGSMRDAQSILDQVIA 234 (620)
T ss_pred CCCHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 68999999999974 4568888888887653
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.36 E-value=6.3e-12 Score=148.38 Aligned_cols=190 Identities=22% Similarity=0.333 Sum_probs=125.7
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.++. ++|.+..++.+.+.+... .+.++||+||||||||++|+++|..
T Consensus 184 ~~~~-liGR~~ei~~~i~iL~r~--------------------------------~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 184 GIDP-LIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CCCc-CcCCCHHHHHHHHHHhcc--------------------------------CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 4444 799999999998877511 1268899999999999999999976
Q ss_pred h----------CCCEEEEeccccc-cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 354 l----------~~pfv~v~~s~l~-~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
+ +..++.++.+.+. ...|.|+- +..++.++... ....++||||||||.+...+...+ ..
T Consensus 231 i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l----~~~~~~ILfIDEIh~L~g~g~~~~-----g~ 300 (758)
T PRK11034 231 IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAASG-----GQ 300 (758)
T ss_pred HHhcCCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHH----HhcCCCEEEeccHHHHhccCCCCC-----cH
Confidence 5 3344455544443 23456654 55666665532 234678999999999976532111 12
Q ss_pred HHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
..+.+.|..+++. ..+.+|.+++..+..+.+
T Consensus 301 ~d~~nlLkp~L~~-----------------------g~i~vIgATt~~E~~~~~-------------------------- 331 (758)
T PRK11034 301 VDAANLIKPLLSS-----------------------GKIRVIGSTTYQEFSNIF-------------------------- 331 (758)
T ss_pred HHHHHHHHHHHhC-----------------------CCeEEEecCChHHHHHHh--------------------------
Confidence 2355666666651 125667776643222111
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHH
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La 582 (684)
...|.|.+||+ .|.+++++.++..+|++. +..+|.. ...+.++++|++.++
T Consensus 332 -------------------~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~----~~~~ye~-----~h~v~i~~~al~~a~ 382 (758)
T PRK11034 332 -------------------EKDRALARRFQ-KIDITEPSIEETVQIING----LKPKYEA-----HHDVRYTAKAVRAAV 382 (758)
T ss_pred -------------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHH----HHHHhhh-----ccCCCcCHHHHHHHH
Confidence 13488889997 799999999999999986 3333333 236778899998877
Q ss_pred Hh
Q 005667 583 KK 584 (684)
Q Consensus 583 ~~ 584 (684)
+.
T Consensus 383 ~l 384 (758)
T PRK11034 383 EL 384 (758)
T ss_pred HH
Confidence 64
No 153
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.36 E-value=1.2e-11 Score=130.90 Aligned_cols=184 Identities=23% Similarity=0.335 Sum_probs=118.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
++|++++++.+..++... ...+++|+||||||||++|+++++.+..
T Consensus 19 ~~g~~~~~~~l~~~i~~~--------------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~ 66 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEK--------------------------------NMPHLLFAGPPGTGKTTAALALARELYGED 66 (319)
T ss_pred hcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 589999999998887410 0147899999999999999999998732
Q ss_pred ---CEEEEeccccccccccccc-hHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005667 357 ---PFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ---pfv~v~~s~l~~~gyvG~~-~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
.++.+++++-. +.+ ....+..+....+. ......+|+|||+|.+... .++.|++.
T Consensus 67 ~~~~~i~~~~~~~~-----~~~~~~~~i~~~~~~~~~--~~~~~~vviiDe~~~l~~~--------------~~~~L~~~ 125 (319)
T PRK00440 67 WRENFLELNASDER-----GIDVIRNKIKEFARTAPV--GGAPFKIIFLDEADNLTSD--------------AQQALRRT 125 (319)
T ss_pred cccceEEecccccc-----chHHHHHHHHHHHhcCCC--CCCCceEEEEeCcccCCHH--------------HHHHHHHH
Confidence 34444443221 111 11222222221111 1134569999999999776 78889999
Q ss_pred HhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhh
Q 005667 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (684)
++.. ..++.+|++++...
T Consensus 126 le~~---------------------~~~~~lIl~~~~~~----------------------------------------- 143 (319)
T PRK00440 126 MEMY---------------------SQNTRFILSCNYSS----------------------------------------- 143 (319)
T ss_pred HhcC---------------------CCCCeEEEEeCCcc-----------------------------------------
Confidence 8720 11234444443110
Q ss_pred ccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCCh
Q 005667 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GA 592 (684)
.+.+++.+|.. ++.|.+++.+++..++...+.. . .+.+++++++.|++.+ ++..
T Consensus 144 ---------~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~-----------~--~~~i~~~al~~l~~~~---~gd~ 197 (319)
T PRK00440 144 ---------KIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAEN-----------E--GIEITDDALEAIYYVS---EGDM 197 (319)
T ss_pred ---------ccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---CCCH
Confidence 12344556665 6899999999998888763221 1 4568999999999963 4567
Q ss_pred HHHHHHHHHHH
Q 005667 593 RGLRSLLENIL 603 (684)
Q Consensus 593 R~Lr~iIe~~l 603 (684)
|.+.+.++.+.
T Consensus 198 r~~~~~l~~~~ 208 (319)
T PRK00440 198 RKAINALQAAA 208 (319)
T ss_pred HHHHHHHHHHH
Confidence 88877777644
No 154
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.35 E-value=1.3e-11 Score=145.77 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=92.1
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraI 350 (684)
+...+...|+|++.+|+.|.-++... ..+....+ ..|.+.....--....||||+|+||||||.+|+++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG-------~~k~~~~~----~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~I 512 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSG-------NKNSSDFN----KSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYT 512 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcC-------Cccccccc----cccccccccccccCCceEEEeCCCCccHHHHHHHH
Confidence 44555566999999999887666411 11000000 00000000001122369999999999999999999
Q ss_pred HHHhC-------CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchH
Q 005667 351 ARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 351 A~~l~-------~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e 423 (684)
++... .++..++++.... +.+...+ .+....+.+..+.+|+++|||++++...
T Consensus 513 h~lspR~~ytsG~~~s~vgLTa~~~--~~d~~tG-----~~~le~GaLvlAdgGtL~IDEidkms~~------------- 572 (915)
T PTZ00111 513 HLLSPRSIYTSGKSSSSVGLTASIK--FNESDNG-----RAMIQPGAVVLANGGVCCIDELDKCHNE------------- 572 (915)
T ss_pred HHhCCccccCCCCCCccccccchhh--hcccccC-----cccccCCcEEEcCCCeEEecchhhCCHH-------------
Confidence 98652 2444444433210 0000000 0111223455678899999999999888
Q ss_pred HHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcc
Q 005667 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~ 470 (684)
.|.+|+++||...+.|...|..... ..++.+|+|+|+.
T Consensus 573 -~Q~aLlEaMEqqtIsI~KaGi~~tL--------~ar~rVIAAaNP~ 610 (915)
T PTZ00111 573 -SRLSLYEVMEQQTVTIAKAGIVATL--------KAETAILASCNPI 610 (915)
T ss_pred -HHHHHHHHHhCCEEEEecCCcceec--------CCCeEEEEEcCCc
Confidence 9999999999777666444433222 2346677777753
No 155
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.2e-11 Score=141.27 Aligned_cols=184 Identities=24% Similarity=0.318 Sum_probs=124.0
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.|..++.+.. -++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 19 viGq~~~~~~L~~~i~~~~-------------------------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~ 67 (614)
T PRK14971 19 VVGQEALTTTLKNAIATNK-------------------------------LAHAYLFCGPRGVGKTTCARIFAKTINCQN 67 (614)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 7999999999998885110 12568999999999999999999988531
Q ss_pred ------------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccc
Q 005667 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~ 413 (684)
++.+++. +..+ ...++.+..........+...|++|||+|.|...
T Consensus 68 ~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~-----~~~~---vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~--- 136 (614)
T PRK14971 68 LTADGEACNECESCVAFNEQRSYNIHELDAA-----SNNS---VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA--- 136 (614)
T ss_pred CCCCCCCCCcchHHHHHhcCCCCceEEeccc-----ccCC---HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH---
Confidence 2222221 1111 1234444433221112245679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccc
Q 005667 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~ 493 (684)
.+++||+.||. ...+++||++++..
T Consensus 137 -----------a~naLLK~LEe---------------------pp~~tifIL~tt~~----------------------- 161 (614)
T PRK14971 137 -----------AFNAFLKTLEE---------------------PPSYAIFILATTEK----------------------- 161 (614)
T ss_pred -----------HHHHHHHHHhC---------------------CCCCeEEEEEeCCc-----------------------
Confidence 89999999992 11235566654310
Q ss_pred ccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceec
Q 005667 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i 573 (684)
..+.|.+++|.. ++.|.+++.+++.+.+...+. .. .+.+
T Consensus 162 ---------------------------~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~ia~-----------~e--gi~i 200 (614)
T PRK14971 162 ---------------------------HKILPTILSRCQ-IFDFNRIQVADIVNHLQYVAS-----------KE--GITA 200 (614)
T ss_pred ---------------------------hhchHHHHhhhh-eeecCCCCHHHHHHHHHHHHH-----------Hc--CCCC
Confidence 014456667764 799999999999987775221 12 5678
Q ss_pred CHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 574 ~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++++|++.+ +++.|.+.+.+++++
T Consensus 201 ~~~al~~La~~s---~gdlr~al~~Lekl~ 227 (614)
T PRK14971 201 EPEALNVIAQKA---DGGMRDALSIFDQVV 227 (614)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999974 566888888887754
No 156
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3e-11 Score=139.71 Aligned_cols=185 Identities=24% Similarity=0.323 Sum_probs=120.0
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+.+++.|..++.... -++.+||+||+|+|||++|+.+|+.+++..
T Consensus 18 iiGq~~~~~~L~~~i~~~~-------------------------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~ 66 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEGR-------------------------------VAHAYLFTGPRGVGKTSTARILAKAVNCTT 66 (585)
T ss_pred hcCCHHHHHHHHHHHHhCC-------------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 7999999999988875110 025679999999999999999999985321
Q ss_pred -------------------------EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccc
Q 005667 359 -------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 359 -------------------------v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~ 413 (684)
+.++. ....+. ..++++..........+...||+|||+|.|..+
T Consensus 67 ~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~-----~~~~~v---d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~--- 135 (585)
T PRK14950 67 NDPKGRPCGTCEMCRAIAEGSAVDVIEMDA-----ASHTSV---DDAREIIERVQFRPALARYKVYIIDEVHMLSTA--- 135 (585)
T ss_pred CCCCCCCCccCHHHHHHhcCCCCeEEEEec-----cccCCH---HHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH---
Confidence 11111 111221 223333332211111245679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccc
Q 005667 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~ 493 (684)
.++.||+.||.. ..+++||++++ ++++
T Consensus 136 -----------a~naLLk~LEep---------------------p~~tv~Il~t~--~~~k------------------- 162 (585)
T PRK14950 136 -----------AFNALLKTLEEP---------------------PPHAIFILATT--EVHK------------------- 162 (585)
T ss_pred -----------HHHHHHHHHhcC---------------------CCCeEEEEEeC--Chhh-------------------
Confidence 899999999820 12355555433 1111
Q ss_pred ccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceec
Q 005667 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i 573 (684)
+.+.+.+|.. .+.|.+++.+++.+++...+. .. .+.+
T Consensus 163 -----------------------------ll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~-----------~e--gl~i 199 (585)
T PRK14950 163 -----------------------------VPATILSRCQ-RFDFHRHSVADMAAHLRKIAA-----------AE--GINL 199 (585)
T ss_pred -----------------------------hhHHHHhccc-eeeCCCCCHHHHHHHHHHHHH-----------Hc--CCCC
Confidence 1233445544 688999999998888765321 12 4668
Q ss_pred CHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 ~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|++.+ +++.|.+.+.++++..
T Consensus 200 ~~eal~~La~~s---~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 200 EPGALEAIARAA---TGSMRDAENLLQQLAT 227 (585)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999864 4568888888887643
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.33 E-value=1.3e-11 Score=147.89 Aligned_cols=190 Identities=25% Similarity=0.316 Sum_probs=130.5
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.++. |+|.++.++.+.+.+... .+.+++|+||||||||++|+.+|..
T Consensus 177 ~~~~-~igr~~ei~~~~~~L~r~--------------------------------~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 177 NLDP-VIGREKEIERVIQILGRR--------------------------------TKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCC-CCCcHHHHHHHHHHHccc--------------------------------ccCCeEEECCCCCCHHHHHHHHHHH
Confidence 3444 799999999999887511 1268999999999999999999988
Q ss_pred h----------CCCEEEEeccccc-cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 354 l----------~~pfv~v~~s~l~-~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
+ +.+++.++++.+. ...|.|+- +..+..++.... ...+.||||||||.+...+... ++.
T Consensus 224 i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~----~~~~~ILfiDEih~l~~~g~~~-g~~---- 293 (821)
T CHL00095 224 IVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQ----ENNNIILVIDEVHTLIGAGAAE-GAI---- 293 (821)
T ss_pred HHhCCCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHH----hcCCeEEEEecHHHHhcCCCCC-Ccc----
Confidence 6 3578999988764 35677764 667777776542 2356799999999998653221 111
Q ss_pred HHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
.+.+.|...+.. ..+.+|.+++.....+.+
T Consensus 294 -~~a~lLkp~l~r-----------------------g~l~~IgaTt~~ey~~~i-------------------------- 323 (821)
T CHL00095 294 -DAANILKPALAR-----------------------GELQCIGATTLDEYRKHI-------------------------- 323 (821)
T ss_pred -cHHHHhHHHHhC-----------------------CCcEEEEeCCHHHHHHHH--------------------------
Confidence 267777777761 125556666633221111
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHH
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La 582 (684)
+ ..|.|..||. .|.+.+++.++...|++. +..+|.+.. .+.++++++..++
T Consensus 324 -----------e--------~D~aL~rRf~-~I~v~ep~~~e~~aILr~----l~~~~e~~~-----~v~i~deal~~i~ 374 (821)
T CHL00095 324 -----------E--------KDPALERRFQ-PVYVGEPSVEETIEILFG----LRSRYEKHH-----NLSISDKALEAAA 374 (821)
T ss_pred -----------h--------cCHHHHhcce-EEecCCCCHHHHHHHHHH----HHHHHHHHc-----CCCCCHHHHHHHH
Confidence 1 2377888987 578888999999999886 334444322 3448999999888
Q ss_pred Hhc
Q 005667 583 KKA 585 (684)
Q Consensus 583 ~~a 585 (684)
+.+
T Consensus 375 ~ls 377 (821)
T CHL00095 375 KLS 377 (821)
T ss_pred HHh
Confidence 754
No 158
>PRK06893 DNA replication initiation factor; Validated
Probab=99.32 E-value=1.9e-11 Score=125.33 Aligned_cols=165 Identities=16% Similarity=0.245 Sum_probs=104.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
..++|+||||||||+|++++|+.+ +.....++..... . .....+... .+..+|+||||+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~-------~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---Y-------FSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---h-------hhHHHHhhc------ccCCEEEEeChhhh
Confidence 467999999999999999999886 2333444443211 0 011111111 13369999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
..... .+..|+.+++.. ......++|+|++...
T Consensus 104 ~~~~~------------~~~~l~~l~n~~-------------------~~~~~~illits~~~p---------------- 136 (229)
T PRK06893 104 IGNEE------------WELAIFDLFNRI-------------------KEQGKTLLLISADCSP---------------- 136 (229)
T ss_pred cCChH------------HHHHHHHHHHHH-------------------HHcCCcEEEEeCCCCh----------------
Confidence 65411 445677777610 0112234455554210
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccccc--ceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHh
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~ 565 (684)
..+. ...|+|.+|+ ..++.+.+++.+++.+|+++.+..
T Consensus 137 --------------------~~l~----------~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~---------- 176 (229)
T PRK06893 137 --------------------HALS----------IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ---------- 176 (229)
T ss_pred --------------------HHcc----------ccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH----------
Confidence 0000 1236777877 468899999999999999863211
Q ss_pred hCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
. .+.++++++++|+++. +...|.|..+++++-.
T Consensus 177 -~--~l~l~~~v~~~L~~~~---~~d~r~l~~~l~~l~~ 209 (229)
T PRK06893 177 -R--GIELSDEVANFLLKRL---DRDMHTLFDALDLLDK 209 (229)
T ss_pred -c--CCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHH
Confidence 1 5889999999999973 5678999999998743
No 159
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.32 E-value=2.7e-11 Score=133.97 Aligned_cols=173 Identities=17% Similarity=0.288 Sum_probs=112.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccc---chHHHHHHHHhhcchhhHhhcCCEEEEc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGE---DVESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-----~~pfv~v~~s~l~~~gyvG~---~~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
.+++|+||+|+|||+|++++++.+ +..++++++.++.. .+... .....+...+ ....+|+||
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~dlLiiD 206 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEEFKEKY---------RSVDLLLID 206 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHHHHHHH---------HhCCEEEEe
Confidence 578999999999999999999887 45678888776542 11110 0001111111 123599999
Q ss_pred cccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcccc
Q 005667 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 403 EIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~ 482 (684)
||+.+.... ..+..|+.+++... . .+..+|+|++... .
T Consensus 207 Di~~l~~~~------------~~~~~l~~~~n~~~-------------------~-~~~~iiits~~~p-~--------- 244 (405)
T TIGR00362 207 DIQFLAGKE------------RTQEEFFHTFNALH-------------------E-NGKQIVLTSDRPP-K--------- 244 (405)
T ss_pred hhhhhcCCH------------HHHHHHHHHHHHHH-------------------H-CCCCEEEecCCCH-H---------
Confidence 999986541 15666777776110 0 1112334444210 0
Q ss_pred CCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHH
Q 005667 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 483 ~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy 560 (684)
.+. .+.+.+.+|+. .++.+.+++.+++.+|++..+..
T Consensus 245 --------------------------~l~----------~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----- 283 (405)
T TIGR00362 245 --------------------------ELP----------GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE----- 283 (405)
T ss_pred --------------------------HHh----------hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH-----
Confidence 000 13467888885 58999999999999999863222
Q ss_pred HHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005667 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 561 ~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al 607 (684)
..+.++++++++|+++ ...++|.|+.+|.++...+.
T Consensus 284 --------~~~~l~~e~l~~ia~~---~~~~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 284 --------EGLELPDEVLEFIAKN---IRSNVRELEGALNRLLAYAS 319 (405)
T ss_pred --------cCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHH
Confidence 1678899999999986 35668999999999876654
No 160
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.32 E-value=1.9e-11 Score=141.62 Aligned_cols=141 Identities=21% Similarity=0.314 Sum_probs=84.6
Q ss_pred hHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCC-CeEEeecCceEEEecCCc
Q 005667 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG-DNIQIDTKDILFICGGAF 469 (684)
Q Consensus 391 v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~-~~i~IdtsniIfI~tgn~ 469 (684)
+..+++|+|||||++.|.+. +|..|+++|+...+.+........... +... -..++.+|++++.
T Consensus 213 L~~AngGtL~Ldei~~L~~~--------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~-ip~dvrvIa~~~~ 277 (608)
T TIGR00764 213 IHRAHKGVLYIDEIKTMPLE--------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEP-VPCDFILVASGNL 277 (608)
T ss_pred eEECCCCEEEEEChHhCCHH--------------HHHHHHHHHHhCcEEecCccccccccccCCCC-CccceEEEEECCH
Confidence 44677899999999999977 999999999855554421111000000 0001 1124667777763
Q ss_pred ccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc---eEEEcCCC---CHH
Q 005667 470 VDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP---VLVSLLAL---TEN 543 (684)
Q Consensus 470 ~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d---~iI~f~pL---s~e 543 (684)
.+ ...+.|+|+.||+ ..+.|.+. +.+
T Consensus 278 ~~------------------------------------------------l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e 309 (608)
T TIGR00764 278 DD------------------------------------------------LEGMHPALRSRIRGYGYEVYMKDTMPDTPE 309 (608)
T ss_pred HH------------------------------------------------HhhcCHHHHHHhcCCeEEEEeeccCCCCHH
Confidence 11 0136799999999 66666543 555
Q ss_pred HHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcC-------CCCCChHHHHHHHHHH
Q 005667 544 QLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI-------SKNTGARGLRSLLENI 602 (684)
Q Consensus 544 el~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay-------~~~~GAR~Lr~iIe~~ 602 (684)
...++++. +.++ .+..|....++++|++.|.+++- .+....|+|.++++..
T Consensus 310 ~~~~~~~~----i~~~----~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 310 NRDKLVQF----VAQE----VKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHHHHHH----HHHH----HHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 65555432 2222 23344445899999999987532 1334467777777665
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=1.9e-11 Score=146.76 Aligned_cols=167 Identities=22% Similarity=0.273 Sum_probs=114.0
Q ss_pred HhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005667 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 273 ~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..|+. |+|+++.++.+.+.+... ...+++|+||||||||++|+++|.
T Consensus 175 ~~l~~-vigr~~ei~~~i~iL~r~--------------------------------~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 175 GKLDP-VIGRDEEIRRTIQVLQRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CCCCc-CCCCHHHHHHHHHHHhcC--------------------------------CcCceEEECCCCCCHHHHHHHHHH
Confidence 34554 799999888888777511 126899999999999999999999
Q ss_pred Hh----------CCCEEEEeccccc-cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCc
Q 005667 353 YV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (684)
Q Consensus 353 ~l----------~~pfv~v~~s~l~-~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~ 421 (684)
.+ +.+++.++...+. ...|.|+- +..+..++.... ....+.||||||||.+...+.+ .++.|
T Consensus 222 ~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~---~~~~~~ILfIDEih~l~~~~~~-~~~~d-- 294 (857)
T PRK10865 222 RIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA-DGAMD-- 294 (857)
T ss_pred HhhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHH---HcCCCeEEEEecHHHhccCCCC-ccchh--
Confidence 87 5678888888764 24466764 566777665421 1135679999999999865321 12222
Q ss_pred hHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCc
Q 005667 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (684)
Q Consensus 422 ~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~ 501 (684)
+++.|+..++. ..+.+|.+++..+..+.+
T Consensus 295 ---~~~~lkp~l~~-----------------------g~l~~IgaTt~~e~r~~~------------------------- 323 (857)
T PRK10865 295 ---AGNMLKPALAR-----------------------GELHCVGATTLDEYRQYI------------------------- 323 (857)
T ss_pred ---HHHHhcchhhc-----------------------CCCeEEEcCCCHHHHHHh-------------------------
Confidence 77777777761 125667776643221111
Q ss_pred hhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhc
Q 005667 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 502 ~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
...++|.+||+. |.+..++.++..+|++.
T Consensus 324 --------------------~~d~al~rRf~~-i~v~eP~~~~~~~iL~~ 352 (857)
T PRK10865 324 --------------------EKDAALERRFQK-VFVAEPSVEDTIAILRG 352 (857)
T ss_pred --------------------hhcHHHHhhCCE-EEeCCCCHHHHHHHHHH
Confidence 145888999985 55666689999998864
No 162
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=6.1e-11 Score=128.39 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=127.7
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~-- 355 (684)
.++|.++.++.|...+..... + ..+.+++|+||||||||++++.+++.+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~----~------------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR----G------------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999999999988852111 0 0126899999999999999999987652
Q ss_pred -------CCEEEEecccccccc---------c---------cccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 356 -------VPFVIADATTLTQAG---------Y---------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 356 -------~pfv~v~~s~l~~~g---------y---------vG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
.+++.++|....... + .|.+....+..++... .....+.||+|||+|.+...
T Consensus 68 ~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlvIDE~d~L~~~ 144 (365)
T TIGR02928 68 AEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKEL---NERGDSLIIVLDEIDYLVGD 144 (365)
T ss_pred hhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEECchhhhccC
Confidence 468888986543110 0 0111111122222110 01234568999999999732
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcc
Q 005667 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~ 490 (684)
.. .++..|+++.+.. .....++.+|+.+|..++.
T Consensus 145 ~~-----------~~L~~l~~~~~~~------------------~~~~~~v~lI~i~n~~~~~----------------- 178 (365)
T TIGR02928 145 DD-----------DLLYQLSRARSNG------------------DLDNAKVGVIGISNDLKFR----------------- 178 (365)
T ss_pred Cc-----------HHHHhHhcccccc------------------CCCCCeEEEEEEECCcchH-----------------
Confidence 10 1445555442200 1122456667666532210
Q ss_pred cccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc-eEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCc
Q 005667 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi 569 (684)
+ .+.+.+.+|+. ..+.|+|++.+++.+|++..+..- + .
T Consensus 179 --------------------~----------~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~-------~----~ 217 (365)
T TIGR02928 179 --------------------E----------NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA-------F----Y 217 (365)
T ss_pred --------------------h----------hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh-------c----c
Confidence 0 12344455663 578999999999999998643210 0 1
Q ss_pred ceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005667 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 570 ~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
...+++++++++++.+....+.+|....+++.++..+..
T Consensus 218 ~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 218 DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 234889999998886544456688888888877665543
No 163
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.30 E-value=3.5e-11 Score=128.17 Aligned_cols=61 Identities=11% Similarity=0.316 Sum_probs=47.1
Q ss_pred cCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005667 521 YGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 521 ~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe 600 (684)
.|++.+|++|+- ||.-.||+.+++.+|++..... ..+.++++|+++|++.+ . ..+||-.++
T Consensus 343 hGIP~DlLDRll-II~t~py~~~EireIi~iRa~e-------------e~i~l~~~Ale~L~~ig--~---etSLRYa~q 403 (450)
T COG1224 343 HGIPLDLLDRLL-IISTRPYSREEIREIIRIRAKE-------------EDIELSDDALEYLTDIG--E---ETSLRYAVQ 403 (450)
T ss_pred CCCCHhhhhhee-EEecCCCCHHHHHHHHHHhhhh-------------hccccCHHHHHHHHhhc--h---hhhHHHHHH
Confidence 367888999986 7899999999999999863222 27889999999999952 2 345666665
No 164
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.30 E-value=4.7e-11 Score=121.81 Aligned_cols=172 Identities=19% Similarity=0.337 Sum_probs=106.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccc---chHHHHHHHHhhcchhhHhhcCCEEEEc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGE---DVESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-----~~pfv~v~~s~l~~~gyvG~---~~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
..++|+||+|+|||+|.+++++++ +..++++++.++... +... .....+...+. .--+|+||
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~~~~~~~~~~~~~---------~~DlL~iD 104 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALRDGEIEEFKDRLR---------SADLLIID 104 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHHTTSHHHHHHHHC---------TSSEEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHHcccchhhhhhhh---------cCCEEEEe
Confidence 578999999999999999998775 456788887766421 1100 00111112222 23599999
Q ss_pred cccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcccc
Q 005667 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 403 EIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~ 482 (684)
+++.+... +..|..|..+++... . ++-.+|+|+...-
T Consensus 105 Di~~l~~~------------~~~q~~lf~l~n~~~-------------------~-~~k~li~ts~~~P----------- 141 (219)
T PF00308_consen 105 DIQFLAGK------------QRTQEELFHLFNRLI-------------------E-SGKQLILTSDRPP----------- 141 (219)
T ss_dssp TGGGGTTH------------HHHHHHHHHHHHHHH-------------------H-TTSEEEEEESS-T-----------
T ss_pred cchhhcCc------------hHHHHHHHHHHHHHH-------------------h-hCCeEEEEeCCCC-----------
Confidence 99999765 126888888887211 1 1122333433110
Q ss_pred CCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccccc--ceEEEcCCCCHHHHHHHHhchHHHHHHHH
Q 005667 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 483 ~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy 560 (684)
.++ ..+.|.|.+|+ ..++.+.+++.++..+|+.+....
T Consensus 142 ---------------------------------~~l--~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----- 181 (219)
T PF00308_consen 142 ---------------------------------SEL--SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE----- 181 (219)
T ss_dssp ---------------------------------TTT--TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH-----
T ss_pred ---------------------------------ccc--cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH-----
Confidence 000 02557888898 458999999999999999874322
Q ss_pred HHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005667 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 561 ~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~a 606 (684)
. .+.++++++++|+++ ...+.|+|..+|.++...+
T Consensus 182 ------~--~~~l~~~v~~~l~~~---~~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 182 ------R--GIELPEEVIEYLARR---FRRDVRELEGALNRLDAYA 216 (219)
T ss_dssp ------T--T--S-HHHHHHHHHH---TTSSHHHHHHHHHHHHHHH
T ss_pred ------h--CCCCcHHHHHHHHHh---hcCCHHHHHHHHHHHHHHh
Confidence 1 667999999999997 3567899999999876543
No 165
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=1.3e-10 Score=127.20 Aligned_cols=212 Identities=21% Similarity=0.227 Sum_probs=129.0
Q ss_pred ccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005667 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l-- 354 (684)
+.++|.++..+.|...+..... + ..+.+++++||||||||++++.+++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~----~------------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR----G------------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3478999999999888852211 0 012679999999999999999998877
Q ss_pred ---CCCEEEEeccccccc------------c----ccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccc
Q 005667 355 ---NVPFVIADATTLTQA------------G----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 355 ---~~pfv~v~~s~l~~~------------g----yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~ 415 (684)
+..++.++|...... + ..|......+..+.... -....+.||+|||+|.+....
T Consensus 82 ~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~viviDE~d~l~~~~---- 154 (394)
T PRK00411 82 IAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL---DERDRVLIVALDDINYLFEKE---- 154 (394)
T ss_pred hcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCHhHhhccC----
Confidence 467889998654310 0 01111112222211110 011234689999999997221
Q ss_pred cCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccccc
Q 005667 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~ 495 (684)
+...+..|++.++. ....++.+|+.++..++...
T Consensus 155 ------~~~~l~~l~~~~~~--------------------~~~~~v~vI~i~~~~~~~~~-------------------- 188 (394)
T PRK00411 155 ------GNDVLYSLLRAHEE--------------------YPGARIGVIGISSDLTFLYI-------------------- 188 (394)
T ss_pred ------CchHHHHHHHhhhc--------------------cCCCeEEEEEEECCcchhhh--------------------
Confidence 11267777777651 11225667777664321111
Q ss_pred ccCCCchhhhHhHHhhhccchHHHHcCCCccccccc-ceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF-PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~-d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
+.|.+.+|+ ...+.|++++.+++.+|+...+.. . + ..-.++
T Consensus 189 ---------------------------l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~---~----~----~~~~~~ 230 (394)
T PRK00411 189 ---------------------------LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE---G----F----YPGVVD 230 (394)
T ss_pred ---------------------------cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh---h----c----ccCCCC
Confidence 223344444 246899999999999999864311 0 1 023589
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al 607 (684)
+++++.+++.+....+.+|..-.++..++..+.
T Consensus 231 ~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 231 DEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 999999999754445667877777776655544
No 166
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.3e-11 Score=134.37 Aligned_cols=179 Identities=24% Similarity=0.377 Sum_probs=110.0
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~- 356 (684)
+|+||+.||+++..+.. | .+|+||+||||||||++|+.+...+-.
T Consensus 180 DV~GQ~~AKrAleiAAA----------------G------------------gHnLl~~GpPGtGKTmla~Rl~~lLPpl 225 (490)
T COG0606 180 DVKGQEQAKRALEIAAA----------------G------------------GHNLLLVGPPGTGKTMLASRLPGLLPPL 225 (490)
T ss_pred hhcCcHHHHHHHHHHHh----------------c------------------CCcEEEecCCCCchHHhhhhhcccCCCC
Confidence 38999999999988874 0 289999999999999999988765510
Q ss_pred ---CEE------EEec-----------cccccccccccchHHHHHHHH----hhcchhhHhhcCCEEEEccccccchhcc
Q 005667 357 ---PFV------IADA-----------TTLTQAGYVGEDVESILYKLL----TVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 357 ---pfv------~v~~-----------s~l~~~gyvG~~~~~~l~~l~----~~a~~~v~~a~~gVLfIDEIDkL~~~r~ 412 (684)
.++ .++. ..+..+ +++ .-...+. .-.++.+..+++|||||||.-.+..+
T Consensus 226 s~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~P---HHs--aS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~-- 298 (490)
T COG0606 226 SIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAP---HHS--ASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS-- 298 (490)
T ss_pred ChHHHHHHHHHhhhcccccccCccceeCCccCC---Ccc--chHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH--
Confidence 000 0000 001000 111 1111111 12345567889999999999998776
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc-Cccc
Q 005667 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF-GAPV 491 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf-~~~~ 491 (684)
+++.|.+-||...+.|...+ .......++.+|++.|. +..|+ +.+.
T Consensus 299 ------------iLe~LR~PLE~g~i~IsRa~--------~~v~ypa~Fqlv~AmNp-------------cpcG~~~~~~ 345 (490)
T COG0606 299 ------------ILEALREPLENGKIIISRAG--------SKVTYPARFQLVAAMNP-------------CPCGNLGAPL 345 (490)
T ss_pred ------------HHHHHhCccccCcEEEEEcC--------CeeEEeeeeEEhhhcCC-------------CCccCCCCCC
Confidence 99999999996655542111 11333456777777664 22332 2222
Q ss_pred ccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHH
Q 005667 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQL 545 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel 545 (684)
..- .+.......++.+ +.-+|++|||..+..+.++..++
T Consensus 346 ~~C-----~c~~~~~~~Y~~k----------lSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 346 RRC-----PCSPRQIKRYLNK----------LSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred CCc-----CCCHHHHHHHHHH----------hhHHHHhhhhheecccCCCHHHh
Confidence 211 1223334444443 55889999999999999985554
No 167
>PRK05642 DNA replication initiation factor; Validated
Probab=99.29 E-value=8.4e-11 Score=121.03 Aligned_cols=168 Identities=18% Similarity=0.264 Sum_probs=110.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
.+++|+||+|||||+|++++++.+ +...+++++.++... . ... .+.+.. .-+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-----~-~~~-~~~~~~---------~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-----G-PEL-LDNLEQ---------YELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-----h-HHH-HHhhhh---------CCEEEEechhhh
Confidence 688999999999999999998765 456677777665421 0 111 111221 148999999988
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
.... ..+..|+.+++.. ..++..+|+|++...
T Consensus 110 ~~~~------------~~~~~Lf~l~n~~--------------------~~~g~~ilits~~~p---------------- 141 (234)
T PRK05642 110 AGKA------------DWEEALFHLFNRL--------------------RDSGRRLLLAASKSP---------------- 141 (234)
T ss_pred cCCh------------HHHHHHHHHHHHH--------------------HhcCCEEEEeCCCCH----------------
Confidence 6431 1456677777610 111123344544210
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccccc--ceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHh
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~ 565 (684)
..+ ....|+|++|+ ..++.+.+++.+++.++++....
T Consensus 142 --------------------~~l----------~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~----------- 180 (234)
T PRK05642 142 --------------------REL----------PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS----------- 180 (234)
T ss_pred --------------------HHc----------CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH-----------
Confidence 000 01358999999 46889999999999999875211
Q ss_pred hCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005667 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.. .+.++++++++|+++ ....+|.|..+++++...++.
T Consensus 181 ~~--~~~l~~ev~~~L~~~---~~~d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 181 RR--GLHLTDEVGHFILTR---GTRSMSALFDLLERLDQASLQ 218 (234)
T ss_pred Hc--CCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence 11 478999999999996 366789999999988654443
No 168
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.29 E-value=2e-11 Score=131.59 Aligned_cols=62 Identities=34% Similarity=0.574 Sum_probs=45.5
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~-- 355 (684)
-+|||.+|.++.-..+.. +..+ ....+.+||.||||||||.||-++|+.++
T Consensus 25 GlVGQ~~AReAagiiv~m----Ik~~-----------------------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDM----IKEG-----------------------KIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp TEES-HHHHHHHHHHHHH----HHTT-------------------------TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccChHHHHHHHHHHHHH----Hhcc-----------------------cccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 379999999988777641 1111 11238999999999999999999999996
Q ss_pred CCEEEEecccc
Q 005667 356 VPFVIADATTL 366 (684)
Q Consensus 356 ~pfv~v~~s~l 366 (684)
.||+.++++++
T Consensus 78 ~PF~~isgSEi 88 (398)
T PF06068_consen 78 VPFVSISGSEI 88 (398)
T ss_dssp S-EEEEEGGGG
T ss_pred CCeeEccccee
Confidence 79999999887
No 169
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.29 E-value=2.4e-11 Score=136.28 Aligned_cols=176 Identities=16% Similarity=0.298 Sum_probs=111.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-----~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEID 405 (684)
.+++|+||||||||+|++++++.+ +..++.+++.++.. .+...-.......+... -....+|+||||+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNALRNNTMEEFKEK------YRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHcCcHHHHHHH------HhcCCEEEEehhh
Confidence 579999999999999999999887 34577788876542 11111000001111110 0134599999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCC
Q 005667 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~I 485 (684)
.+.... ..+..|+.+++... .....+ |+|++... .
T Consensus 222 ~l~~~~------------~~~~~l~~~~n~l~-------------------~~~~~i-iits~~~p-~------------ 256 (450)
T PRK00149 222 FLAGKE------------RTQEEFFHTFNALH-------------------EAGKQI-VLTSDRPP-K------------ 256 (450)
T ss_pred hhcCCH------------HHHHHHHHHHHHHH-------------------HCCCcE-EEECCCCH-H------------
Confidence 986541 15666777665110 001122 33433110 0
Q ss_pred CcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHHHHH
Q 005667 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 486 Gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
.+. ++.|.+.+|+. .++.+.+++.+++.+|++..+..
T Consensus 257 -----------------------~l~----------~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-------- 295 (450)
T PRK00149 257 -----------------------ELP----------GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-------- 295 (450)
T ss_pred -----------------------HHH----------HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH--------
Confidence 000 13367788884 58999999999999999864221
Q ss_pred HhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005667 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 564 l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al 607 (684)
..+.++++++++|++.. ...+|.|..+|.++...+.
T Consensus 296 -----~~~~l~~e~l~~ia~~~---~~~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 296 -----EGIDLPDEVLEFIAKNI---TSNVRELEGALNRLIAYAS 331 (450)
T ss_pred -----cCCCCCHHHHHHHHcCc---CCCHHHHHHHHHHHHHHHH
Confidence 16789999999999963 6678999999998865543
No 170
>PRK08727 hypothetical protein; Validated
Probab=99.29 E-value=9e-11 Score=120.68 Aligned_cols=168 Identities=20% Similarity=0.278 Sum_probs=106.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
..++|+||+|||||+|+++++..+ +...+.+++.++. ..+.+.+..- ...-+|+|||++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~l------~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----------GRLRDALEAL------EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----------hhHHHHHHHH------hcCCEEEEeCcccc
Confidence 469999999999999999997765 3344555543322 1111222111 12359999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
..... .+..|+.+++.. ..+...+|+|++.. ...
T Consensus 106 ~~~~~------------~~~~lf~l~n~~--------------------~~~~~~vI~ts~~~-p~~------------- 139 (233)
T PRK08727 106 AGQRE------------DEVALFDFHNRA--------------------RAAGITLLYTARQM-PDG------------- 139 (233)
T ss_pred cCChH------------HHHHHHHHHHHH--------------------HHcCCeEEEECCCC-hhh-------------
Confidence 75411 445666666511 01122244555421 000
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccccc--ceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHh
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~ 565 (684)
+ ..+.|+|.+|+ ..++.|++++.+++.+|++..+..
T Consensus 140 ---------------------l-----------~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~---------- 177 (233)
T PRK08727 140 ---------------------L-----------ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR---------- 177 (233)
T ss_pred ---------------------h-----------hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH----------
Confidence 0 01347888887 568999999999999999863211
Q ss_pred hCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005667 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
+ .+.++++++++|+++. +...|.+.++++.+...++.
T Consensus 178 -~--~l~l~~e~~~~La~~~---~rd~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 178 -R--GLALDEAAIDWLLTHG---ERELAGLVALLDRLDRESLA 214 (233)
T ss_pred -c--CCCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHH
Confidence 1 5789999999999973 35678888889987654443
No 171
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=9.9e-11 Score=134.37 Aligned_cols=176 Identities=14% Similarity=0.220 Sum_probs=111.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-----~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEID 405 (684)
..++|+|++|+|||+|+++|++.+ +..++++++.++.. .+...-...... .|... -....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al~~~~~~-~f~~~-----y~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSIRDGKGD-SFRRR-----YREMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHhccHH-HHHHH-----hhcCCEEEEehhc
Confidence 458999999999999999999876 34677888876652 121110000111 11110 0134699999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCC
Q 005667 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~I 485 (684)
.+.... ..+..|+.+++... + .+.-+|+|++..-
T Consensus 388 ~l~gke------------~tqeeLF~l~N~l~-------------------e-~gk~IIITSd~~P-------------- 421 (617)
T PRK14086 388 FLEDKE------------STQEEFFHTFNTLH-------------------N-ANKQIVLSSDRPP-------------- 421 (617)
T ss_pred cccCCH------------HHHHHHHHHHHHHH-------------------h-cCCCEEEecCCCh--------------
Confidence 986541 14566666666110 1 1112233444210
Q ss_pred CcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccccc--ceEEEcCCCCHHHHHHHHhchHHHHHHHHHHH
Q 005667 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 486 Gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
.++ ..+.+.|++|| ..++.+.+++.+.+.+||+..+..
T Consensus 422 ------------------------------~eL--~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~-------- 461 (617)
T PRK14086 422 ------------------------------KQL--VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ-------- 461 (617)
T ss_pred ------------------------------Hhh--hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh--------
Confidence 000 02447788888 568899999999999999863211
Q ss_pred HhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005667 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 564 l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al 607 (684)
..+.++++++++|+++. ..+.|+|+.+|.++...+.
T Consensus 462 -----r~l~l~~eVi~yLa~r~---~rnvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 462 -----EQLNAPPEVLEFIASRI---SRNIRELEGALIRVTAFAS 497 (617)
T ss_pred -----cCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHH
Confidence 16789999999999973 4568999999998865443
No 172
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.27 E-value=6.7e-11 Score=123.88 Aligned_cols=231 Identities=19% Similarity=0.262 Sum_probs=138.9
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005667 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~ 345 (684)
.+...|+..|++.+.||.-|++.|..++..|+.. ..+.+| -.+-|+|+|||||..
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-------------~~p~KP------------LvLSfHG~tGTGKN~ 125 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-------------PNPRKP------------LVLSFHGWTGTGKNY 125 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-------------CCCCCC------------eEEEecCCCCCchhH
Confidence 3456699999999999999999999999866552 112222 566699999999999
Q ss_pred HHHHHHHHhC-----CCEEEEeccc--cccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCC
Q 005667 346 LAKTLARYVN-----VPFVIADATT--LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 346 LAraIA~~l~-----~pfv~v~~s~--l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~ 418 (684)
+++.||+.+. .++|..=.+. +....++..- .. ++...-...+...+.+++++||+|+|++.
T Consensus 126 Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y-k~---eL~~~v~~~v~~C~rslFIFDE~DKmp~g-------- 193 (344)
T KOG2170|consen 126 VAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY-KE---ELKNRVRGTVQACQRSLFIFDEVDKLPPG-------- 193 (344)
T ss_pred HHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH-HH---HHHHHHHHHHHhcCCceEEechhhhcCHh--------
Confidence 9999999883 2332211111 1111121111 11 12222223455788999999999999987
Q ss_pred CCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCccc--HHHHH----HhccccCCCCcCcccc
Q 005667 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD--IEKTI----SERRQDSSIGFGAPVR 492 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~d--Le~~i----~~r~~~~~IGf~~~~~ 492 (684)
+.++|-..+|- ......++.++.|||+-+|..+ +.+.+ +.+..++.+++..-
T Consensus 194 ------Lld~lkpfLdy--------------yp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~-- 251 (344)
T KOG2170|consen 194 ------LLDVLKPFLDY--------------YPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSF-- 251 (344)
T ss_pred ------HHHHHhhhhcc--------------ccccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhh--
Confidence 88888888871 0111247889999999776554 22222 23333444443221
Q ss_pred cccccCCCchhhhHhHHhhhccch---HHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCc
Q 005667 493 ANMRAGGVTDAVVTSSLMETVESS---DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~---dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi 569 (684)
...++...... -+....+++ ..+||..|+|.|++..++...++.. + ...
T Consensus 252 -------------E~~L~~~~~n~~~~Gl~~S~li~--~~lid~fIPFLPLek~hV~~C~r~e---l--------~~r-- 303 (344)
T KOG2170|consen 252 -------------EPALMQSAFNEKAGGLVHSRLIS--NNLIDHFIPFLPLEKRHVRSCIRAE---L--------RKR-- 303 (344)
T ss_pred -------------hHHHHHhhhccccccccccccch--hhHHhhccCcCcccHHHHHHHHHHH---H--------Hhc--
Confidence 11122111110 011111222 2568999999999999999888753 2 222
Q ss_pred ceecCHHHHHHHHH
Q 005667 570 KLHFTENALRLIAK 583 (684)
Q Consensus 570 ~l~i~eeAl~~La~ 583 (684)
.+..+++.++.+++
T Consensus 304 g~~~d~~~~erva~ 317 (344)
T KOG2170|consen 304 GLAPDQDFVERVAN 317 (344)
T ss_pred ccccchHHHHHHHH
Confidence 35566666665555
No 173
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.26 E-value=2.6e-12 Score=120.44 Aligned_cols=123 Identities=24% Similarity=0.363 Sum_probs=73.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~-~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
+|||+||||||||++|+.+|+.++.+++.+.++.... ..+.|.-.-..-...+...........+++++||||+++.++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 5899999999999999999999999999999986543 122221100000000001111112236789999999999877
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcc
Q 005667 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~ 470 (684)
+++.|+.++|+..+.++..+......... ....+..+|+|+|..
T Consensus 81 --------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 81 --------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNPR 124 (139)
T ss_dssp --------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESSS
T ss_pred --------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcCC
Confidence 99999999997766665443322211111 122258889988843
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=4.2e-11 Score=143.95 Aligned_cols=190 Identities=23% Similarity=0.277 Sum_probs=123.7
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.|+. |+|+++.++.+...+.+. ...+++|+||||||||++|+++|..
T Consensus 171 ~~~~-~igr~~ei~~~~~~l~r~--------------------------------~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 171 KLDP-VIGRDEEIRRTIQVLSRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CCCc-CCCcHHHHHHHHHHHhcC--------------------------------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 4444 799999988888777511 1268899999999999999999987
Q ss_pred h----------CCCEEEEeccccc-cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 354 l----------~~pfv~v~~s~l~-~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
+ +.+++.++.+.+. ...|.|+- +..+..++..... ...+.||||||||.+...+.. .++
T Consensus 218 i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~g~~-~~~----- 287 (852)
T TIGR03346 218 IVNGDVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTK---SEGQIILFIDELHTLVGAGKA-EGA----- 287 (852)
T ss_pred HhccCCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHh---cCCCeEEEeccHHHhhcCCCC-cch-----
Confidence 6 4568888877664 34566654 5666666654311 124689999999999764221 111
Q ss_pred HHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
..+++.|...++ ...+.+|.+++..+..+.
T Consensus 288 ~d~~~~Lk~~l~-----------------------~g~i~~IgaTt~~e~r~~--------------------------- 317 (852)
T TIGR03346 288 MDAGNMLKPALA-----------------------RGELHCIGATTLDEYRKY--------------------------- 317 (852)
T ss_pred hHHHHHhchhhh-----------------------cCceEEEEeCcHHHHHHH---------------------------
Confidence 126666665554 123666777663221111
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHH
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La 582 (684)
+ ...|+|.+||. .|.+..++.++..+|++. +..+|.. ...+.++++++..++
T Consensus 318 ----------~--------~~d~al~rRf~-~i~v~~p~~~~~~~iL~~----~~~~~e~-----~~~v~~~d~~i~~~~ 369 (852)
T TIGR03346 318 ----------I--------EKDAALERRFQ-PVFVDEPTVEDTISILRG----LKERYEV-----HHGVRITDPAIVAAA 369 (852)
T ss_pred ----------h--------hcCHHHHhcCC-EEEeCCCCHHHHHHHHHH----HHHHhcc-----ccCCCCCHHHHHHHH
Confidence 1 14588999997 467888899999998875 3333322 224556777777766
Q ss_pred Hh
Q 005667 583 KK 584 (684)
Q Consensus 583 ~~ 584 (684)
..
T Consensus 370 ~l 371 (852)
T TIGR03346 370 TL 371 (852)
T ss_pred Hh
Confidence 54
No 175
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.25 E-value=1.6e-10 Score=135.01 Aligned_cols=205 Identities=15% Similarity=0.227 Sum_probs=128.3
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccce-EEEEccCCCcHHHHHHHHHHHh--
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-vLL~GPpGTGKT~LAraIA~~l-- 354 (684)
.+.|.++-++.|..++...... ..+.+ ++|+|+||||||++++.+.+.+
T Consensus 756 ~LPhREeEIeeLasfL~paIkg----------------------------sgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQ----------------------------SGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhc----------------------------CCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4778898888888887522220 00134 4699999999999999997665
Q ss_pred --------CCCEEEEecccccccc---------c------cccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhc
Q 005667 355 --------NVPFVIADATTLTQAG---------Y------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 355 --------~~pfv~v~~s~l~~~g---------y------vG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r 411 (684)
...+++++|..+.... + .|......+..++..... ......||+|||||.|...
T Consensus 808 eaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK- 884 (1164)
T PTZ00112 808 KTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITK- 884 (1164)
T ss_pred HHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCcc-
Confidence 1457899996553210 0 111112233334332110 0112358999999999875
Q ss_pred cccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccc
Q 005667 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~ 491 (684)
.++.|+.+++... .....+++|+.+|..++-.
T Consensus 885 -------------~QDVLYnLFR~~~------------------~s~SKLiLIGISNdlDLpe----------------- 916 (1164)
T PTZ00112 885 -------------TQKVLFTLFDWPT------------------KINSKLVLIAISNTMDLPE----------------- 916 (1164)
T ss_pred -------------HHHHHHHHHHHhh------------------ccCCeEEEEEecCchhcch-----------------
Confidence 5666777776100 0122466676665322100
Q ss_pred ccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccce-EEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcc
Q 005667 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~ 570 (684)
.+.|.+.+|+.. .+.|+||+.+++.+||...+... .
T Consensus 917 ------------------------------rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A-------------~ 953 (1164)
T PTZ00112 917 ------------------------------RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC-------------K 953 (1164)
T ss_pred ------------------------------hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC-------------C
Confidence 133556666643 47899999999999998743221 2
Q ss_pred eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
-.++++|++++|+.+....+.||..-.++++++.
T Consensus 954 gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 954 EIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 3589999999999876667778877777776654
No 176
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.23 E-value=9.8e-11 Score=135.44 Aligned_cols=201 Identities=19% Similarity=0.223 Sum_probs=126.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEeccccccccccccc-hHHHHH-HHHhhcchhhHhhcCCEEEEccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGED-VESILY-KLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~--~pfv~v~~s~l~~~gyvG~~-~~~~l~-~l~~~a~~~v~~a~~gVLfIDEIDk 406 (684)
.+|||.|+||||||++|+++++.+. .||+.+... .++...+|.- ....+. ..+...++.+..+++||||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~-~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLG-VTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc-cchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 7999999999999999999999885 469888863 3333344431 111111 1112234456678889999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCC
Q 005667 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 L~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IG 486 (684)
+.+. +|+.|+++|+...++|...|... . -..++.+|+|.|..+
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~~~-------~-~p~~f~lIAt~np~e--------------- 138 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGISV-------V-HPAKFALIATYDPAE--------------- 138 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCCce-------e-ecCceEEEEecCCcc---------------
Confidence 9998 99999999996555543223211 1 123566777765321
Q ss_pred cCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCC-CHHHHHHHHhchHHHH---------
Q 005667 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLAL-TENQLVQVLTEPKNAL--------- 556 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pL-s~eel~~Il~~~l~~L--------- 556 (684)
....|.+.|++||+..|.+..+ +.++..+|++......
T Consensus 139 --------------------------------~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~ 186 (589)
T TIGR02031 139 --------------------------------GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELE 186 (589)
T ss_pred --------------------------------ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhH
Confidence 0013778999999987766655 4455567776543211
Q ss_pred -HHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCC-hHHHHHHHHH
Q 005667 557 -GKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG-ARGLRSLLEN 601 (684)
Q Consensus 557 -~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~G-AR~Lr~iIe~ 601 (684)
..++....+..--.+.++++++++|++.+...+.. .|....+++-
T Consensus 187 ~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ 233 (589)
T TIGR02031 187 LLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRA 233 (589)
T ss_pred HHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence 11111112222336788999999999987655543 5655555543
No 177
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-10 Score=127.07 Aligned_cols=142 Identities=20% Similarity=0.237 Sum_probs=103.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
++.||+||||||||++.-|+|++++..++-++.+++.. + .-++.++...+ ..+||+|.+||.-...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~------n--~dLr~LL~~t~------~kSIivIEDIDcs~~l 301 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL------D--SDLRHLLLATP------NKSILLIEDIDCSFDL 301 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC------c--HHHHHHHHhCC------CCcEEEEeeccccccc
Confidence 89999999999999999999999999988888876652 2 22777776654 5699999999997553
Q ss_pred ccccccC--CC--CchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCC
Q 005667 411 AESLNIS--RD--VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 411 r~~~~~~--~d--~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IG 486 (684)
++..... .. ......++.||..+||--- -.....|+|||+|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwS-----------------scg~ERIivFTTNh~E--------------- 349 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFLDGLWS-----------------SCGDERIIVFTTNHKE--------------- 349 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhhccccc-----------------cCCCceEEEEecCChh---------------
Confidence 3322111 11 1223478889999996211 1112467888888543
Q ss_pred cCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchH
Q 005667 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l 553 (684)
.+.|+|+. |+|..|.+.-=+.+.+..++..++
T Consensus 350 -----------------------------------kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 350 -----------------------------------KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred -----------------------------------hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 25577775 999999999999999998888765
No 178
>PHA02244 ATPase-like protein
Probab=99.23 E-value=3.4e-10 Score=123.07 Aligned_cols=109 Identities=19% Similarity=0.363 Sum_probs=72.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc--cccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT--LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~--l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~ 408 (684)
.++||+||||||||++|+++|..++.||+.++... +.-.|++... + . +...+.......+++|+||||+.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~-g-~----~~dgpLl~A~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN-G-K----FHETPFYEAFKKGGLFFIDEIDASI 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc-c-c----ccchHHHHHhhcCCEEEEeCcCcCC
Confidence 68999999999999999999999999999988431 0001121111 0 1 1111111123567899999999999
Q ss_pred hhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCc
Q 005667 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~ 469 (684)
++ ++..|+.++++..+..+ +.. ...-.++.+|+|+|.
T Consensus 194 p~--------------vq~~L~~lLd~r~l~l~--g~~--------i~~h~~FRlIATsN~ 230 (383)
T PHA02244 194 PE--------------ALIIINSAIANKFFDFA--DER--------VTAHEDFRVISAGNT 230 (383)
T ss_pred HH--------------HHHHHHHHhccCeEEec--CcE--------EecCCCEEEEEeeCC
Confidence 88 99999999985554432 111 112346777888774
No 179
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.23 E-value=2.9e-12 Score=120.03 Aligned_cols=111 Identities=28% Similarity=0.332 Sum_probs=65.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc-ccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT-TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s-~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
|+||.|+||+|||++|+++|+.++..|.++.++ ++.++...|..+...-...+.-.++.+ -..|+++|||.+.+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPi---f~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPI---FTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChh---hhceeeecccccCCHH
Confidence 689999999999999999999999999999986 566554445432111111111111211 2369999999999998
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeec-CceEEEecCCcc
Q 005667 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT-KDILFICGGAFV 470 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~Idt-sniIfI~tgn~~ 470 (684)
+|++||++|+++.+.+ .|. .... ....+|+|.|..
T Consensus 78 --------------tQsAlLeam~Er~Vt~--~g~---------~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTI--DGQ---------TYPLPDPFFVIATQNPV 113 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEE--TTE---------EEE--SS-EEEEEE-TT
T ss_pred --------------HHHHHHHHHHcCeEEe--CCE---------EEECCCcEEEEEecCcc
Confidence 9999999999777765 222 2222 236667777743
No 180
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=1.5e-10 Score=129.58 Aligned_cols=177 Identities=19% Similarity=0.312 Sum_probs=108.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-----~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEID 405 (684)
.+++|+||||+|||+|++++++.+ +..++++++.++... +...-....+..+... + .....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~-~~~~~~~~~~~~f~~~--~---~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNEFREK--Y---RKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHhcccHHHHHHH--H---HhcCCEEEEechh
Confidence 579999999999999999999886 345677777665421 1000000001111110 0 0135699999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCC
Q 005667 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~I 485 (684)
.+.... ..+..|+..++... +.... +|+|++.. ...
T Consensus 205 ~l~~~~------------~~q~elf~~~n~l~-------------------~~~k~-iIitsd~~-p~~----------- 240 (440)
T PRK14088 205 FLIGKT------------GVQTELFHTFNELH-------------------DSGKQ-IVICSDRE-PQK----------- 240 (440)
T ss_pred hhcCcH------------HHHHHHHHHHHHHH-------------------HcCCe-EEEECCCC-HHH-----------
Confidence 885431 15566666665100 11112 33333311 000
Q ss_pred CcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccccc--ceEEEcCCCCHHHHHHHHhchHHHHHHHHHHH
Q 005667 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 486 Gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
+. .+.+.+.+|| ..++.+.+++.+++.+|++..+.
T Consensus 241 ------------------------l~----------~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~--------- 277 (440)
T PRK14088 241 ------------------------LS----------EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE--------- 277 (440)
T ss_pred ------------------------HH----------HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH---------
Confidence 00 1235566777 35789999999999999986321
Q ss_pred HhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005667 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 564 l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al 607 (684)
.. .+.++++++++|+++. ..++|.|+.+|.++...+.
T Consensus 278 --~~--~~~l~~ev~~~Ia~~~---~~~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 278 --IE--HGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKE 314 (440)
T ss_pred --hc--CCCCCHHHHHHHHhcc---ccCHHHHHHHHHHHHHHHH
Confidence 11 5778999999999963 5678999999998865443
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.22 E-value=5.9e-11 Score=120.40 Aligned_cols=106 Identities=28% Similarity=0.372 Sum_probs=77.8
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~- 356 (684)
.|||.++.+..|...... -+ -.|++|.||||||||+-+.++|+++=.
T Consensus 28 dIVGNe~tv~rl~via~~-------------------gn-------------mP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKE-------------------GN-------------MPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HhhCCHHHHHHHHHHHHc-------------------CC-------------CCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 379999999999877641 01 159999999999999999999998832
Q ss_pred ----CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005667 357 ----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ----pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
-++..|+++- .|-++-..--+.|....-.+......||+|||+|.+... .|++|.+.
T Consensus 76 ~~ke~vLELNASde-----RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRt 136 (333)
T KOG0991|consen 76 SYKEAVLELNASDE-----RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRT 136 (333)
T ss_pred hhhhHhhhccCccc-----cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHH
Confidence 2556666543 344433333344554444344467789999999999876 99999999
Q ss_pred Hh
Q 005667 433 LE 434 (684)
Q Consensus 433 LE 434 (684)
||
T Consensus 137 ME 138 (333)
T KOG0991|consen 137 ME 138 (333)
T ss_pred HH
Confidence 99
No 182
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=1.1e-10 Score=130.84 Aligned_cols=171 Identities=18% Similarity=0.316 Sum_probs=111.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccc---cchHHHHHHHHhhcchhhHhhcCCEEEEccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVG---EDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG---~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.+++|+||+|+|||+|++++++.+ +..++++++..+.. .+.. ......++..+ ....+|+||||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~l~~~~~~~f~~~~---------~~~dvLiIDDi 211 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSAIRSGEMQRFRQFY---------RNVDALFIEDI 211 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHHHhcchHHHHHHHc---------ccCCEEEEcch
Confidence 579999999999999999999876 46777777765531 0100 00001111111 23469999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCC
Q 005667 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 405 DkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
+.+.... ..|..|+.+++... + .+..+|+|++...
T Consensus 212 q~l~~k~------------~~qeelf~l~N~l~-------------------~-~~k~IIlts~~~p------------- 246 (445)
T PRK12422 212 EVFSGKG------------ATQEEFFHTFNSLH-------------------T-EGKLIVISSTCAP------------- 246 (445)
T ss_pred hhhcCCh------------hhHHHHHHHHHHHH-------------------H-CCCcEEEecCCCH-------------
Confidence 9986531 15666666665100 0 1123344544210
Q ss_pred CCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHHHH
Q 005667 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (684)
Q Consensus 485 IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~ 562 (684)
.++ ..+.+.|++|+. .++.+.+++.+++.+|++..+..
T Consensus 247 -------------------------------~~l--~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~------- 286 (445)
T PRK12422 247 -------------------------------QDL--KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA------- 286 (445)
T ss_pred -------------------------------HHH--hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH-------
Confidence 000 014477888984 78999999999999999864322
Q ss_pred HHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005667 563 MFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 563 ~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~ 605 (684)
. .+.++++++++|+... ..++|+|.+.+++++..
T Consensus 287 ----~--~~~l~~evl~~la~~~---~~dir~L~g~l~~l~~~ 320 (445)
T PRK12422 287 ----L--SIRIEETALDFLIEAL---SSNVKSLLHALTLLAKR 320 (445)
T ss_pred ----c--CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHH
Confidence 1 5789999999999963 56789999999998644
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.8e-10 Score=131.89 Aligned_cols=198 Identities=22% Similarity=0.254 Sum_probs=134.8
Q ss_pred ChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHH
Q 005667 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (684)
Q Consensus 267 ~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~L 346 (684)
+...-...||. |+|.++.++.+.+.+.+.. +.|-+|+|+||+|||.+
T Consensus 161 t~~Ar~gklDP-vIGRd~EI~r~iqIL~RR~--------------------------------KNNPvLiGEpGVGKTAI 207 (786)
T COG0542 161 TELAREGKLDP-VIGRDEEIRRTIQILSRRT--------------------------------KNNPVLVGEPGVGKTAI 207 (786)
T ss_pred HHHHhcCCCCC-CcChHHHHHHHHHHHhccC--------------------------------CCCCeEecCCCCCHHHH
Confidence 33344455555 7999999999988886211 26779999999999999
Q ss_pred HHHHHHHh----------CCCEEEEeccccc-cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccc
Q 005667 347 AKTLARYV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 347 AraIA~~l----------~~pfv~v~~s~l~-~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~ 415 (684)
+..+|... +..++..|++.+. ..+|.|+= +..+..++... ....+-||||||||.+.......+
T Consensus 208 vEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~ev----~~~~~vILFIDEiHtiVGAG~~~G 282 (786)
T COG0542 208 VEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKEV----EKSKNVILFIDEIHTIVGAGATEG 282 (786)
T ss_pred HHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHHH----hcCCCeEEEEechhhhcCCCcccc
Confidence 99999877 3457888888775 36788874 67777776643 234578999999999987632211
Q ss_pred cCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCccccccc
Q 005667 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~ 495 (684)
++.| +-|.|..+|.... +-.|.+++
T Consensus 283 ~a~D-----AaNiLKPaLARGe-----------------------L~~IGATT--------------------------- 307 (786)
T COG0542 283 GAMD-----AANLLKPALARGE-----------------------LRCIGATT--------------------------- 307 (786)
T ss_pred cccc-----hhhhhHHHHhcCC-----------------------eEEEEecc---------------------------
Confidence 1233 7777777776111 11222322
Q ss_pred ccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH
Q 005667 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 496 ~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e 575 (684)
..++.+.++++ +.|-.||. .|.+..++.++-..|++. +...|.. .+.+.+++
T Consensus 308 ----------~~EYRk~iEKD--------~AL~RRFQ-~V~V~EPs~e~ti~ILrG----lk~~yE~-----hH~V~i~D 359 (786)
T COG0542 308 ----------LDEYRKYIEKD--------AALERRFQ-KVLVDEPSVEDTIAILRG----LKERYEA-----HHGVRITD 359 (786)
T ss_pred ----------HHHHHHHhhhc--------hHHHhcCc-eeeCCCCCHHHHHHHHHH----HHHHHHH-----ccCceecH
Confidence 33455555554 44555555 488999999999999986 5555544 23677888
Q ss_pred HHHHHHHHhc
Q 005667 576 NALRLIAKKA 585 (684)
Q Consensus 576 eAl~~La~~a 585 (684)
+|+...+..+
T Consensus 360 ~Al~aAv~LS 369 (786)
T COG0542 360 EALVAAVTLS 369 (786)
T ss_pred HHHHHHHHHH
Confidence 8888877753
No 184
>PRK06620 hypothetical protein; Validated
Probab=99.17 E-value=9e-10 Score=112.14 Aligned_cols=63 Identities=11% Similarity=0.200 Sum_probs=50.7
Q ss_pred cccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 005667 525 PEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENI 602 (684)
Q Consensus 525 PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~ 602 (684)
|+|++|+. .++.+.+++.+++.+++++.+.. . .+.++++++++|+++. +..+|.|.++++++
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-----------~--~l~l~~ev~~~L~~~~---~~d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-----------S--SVTISRQIIDFLLVNL---PREYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 77888884 47999999999998888763221 1 5789999999999974 66789999999985
Q ss_pred H
Q 005667 603 L 603 (684)
Q Consensus 603 l 603 (684)
-
T Consensus 194 ~ 194 (214)
T PRK06620 194 N 194 (214)
T ss_pred H
Confidence 4
No 185
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.17 E-value=4.3e-10 Score=126.28 Aligned_cols=179 Identities=14% Similarity=0.266 Sum_probs=113.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccccccccchH--HHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVE--SILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-----~~pfv~v~~s~l~~~gyvG~~~~--~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.+++|+|++|+|||+|++++++.+ +..++++++.++.. .+...-.. ..+..+... ....-+|+|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~l~~~~~~~~~~~~~------~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDILQKTHKEIEQFKNE------ICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHHhhhHHHHHHHH------hccCCEEEEec
Confidence 578999999999999999999865 34567777766542 11110000 111111111 12345999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.+.... ..+..|..+++... +.. -.+|+|++...
T Consensus 215 iq~l~~k~------------~~~e~lf~l~N~~~-------------------~~~-k~iIltsd~~P------------ 250 (450)
T PRK14087 215 VQFLSYKE------------KTNEIFFTIFNNFI-------------------END-KQLFFSSDKSP------------ 250 (450)
T ss_pred cccccCCH------------HHHHHHHHHHHHHH-------------------HcC-CcEEEECCCCH------------
Confidence 99986431 15667777766110 111 12344544210
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccccc--ceEEEcCCCCHHHHHHHHhchHHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYR 561 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~ 561 (684)
..+ ..+.+.|++|| ..++.+.+++.+++.+|+++.+.
T Consensus 251 ------------------------~~l----------~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~------- 289 (450)
T PRK14087 251 ------------------------ELL----------NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK------- 289 (450)
T ss_pred ------------------------HHH----------hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH-------
Confidence 000 12457788888 46899999999999999987432
Q ss_pred HHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005667 562 KMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 562 ~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
..+..+.++++++++|++.. .+.+|.|..++.++...+..
T Consensus 290 ----~~gl~~~l~~evl~~Ia~~~---~gd~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 290 ----NQNIKQEVTEEAINFISNYY---SDDVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred ----hcCCCCCCCHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHhc
Confidence 22434579999999999963 66799999999998755543
No 186
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=9.2e-10 Score=119.93 Aligned_cols=186 Identities=23% Similarity=0.299 Sum_probs=112.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
|+||+++++.+..++... .-++.+||+||+|+|||++|+.+|+.+.+
T Consensus 25 l~Gh~~a~~~L~~a~~~g-------------------------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~ 73 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREG-------------------------------KLHHALLFEGPEGIGKATLAFHLANHILSHP 73 (351)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 799999999999988511 01267999999999999999999999854
Q ss_pred -----CEEEE----ecc---ccc---cccc--cc----cc--------hHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 357 -----PFVIA----DAT---TLT---QAGY--VG----ED--------VESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 357 -----pfv~v----~~s---~l~---~~gy--vG----~~--------~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
+.... +|. .+. .+.+ +. .. .-..++.+..............|++|||+|.|
T Consensus 74 ~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l 153 (351)
T PRK09112 74 DPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM 153 (351)
T ss_pred ccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc
Confidence 11100 111 000 0000 00 00 01223332221111111234569999999999
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
... .+++||+.||+ ...+.+||+.++..+
T Consensus 154 ~~~--------------aanaLLk~LEE---------------------pp~~~~fiLit~~~~---------------- 182 (351)
T PRK09112 154 NRN--------------AANAILKTLEE---------------------PPARALFILISHSSG---------------- 182 (351)
T ss_pred CHH--------------HHHHHHHHHhc---------------------CCCCceEEEEECChh----------------
Confidence 887 89999999983 112234444332110
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhC
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~ 567 (684)
.+.|.+++|. ..+.|.+++.+++.+++.+.
T Consensus 183 ----------------------------------~llptIrSRc-~~i~l~pl~~~~~~~~L~~~--------------- 212 (351)
T PRK09112 183 ----------------------------------RLLPTIRSRC-QPISLKPLDDDELKKALSHL--------------- 212 (351)
T ss_pred ----------------------------------hccHHHHhhc-cEEEecCCCHHHHHHHHHHh---------------
Confidence 1347778887 48999999999999988751
Q ss_pred CcceecCHHHHHHHHHhcCCCCCChHHHHHHH
Q 005667 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLL 599 (684)
Q Consensus 568 gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iI 599 (684)
+....+++++++.+++.+ ++..|...+++
T Consensus 213 ~~~~~~~~~~~~~i~~~s---~G~pr~Al~ll 241 (351)
T PRK09112 213 GSSQGSDGEITEALLQRS---KGSVRKALLLL 241 (351)
T ss_pred hcccCCCHHHHHHHHHHc---CCCHHHHHHHH
Confidence 111227788888888753 34455554544
No 187
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.11 E-value=1.9e-09 Score=122.19 Aligned_cols=229 Identities=16% Similarity=0.236 Sum_probs=126.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC--EEEEecccccc--------cc-----cc-ccchHHHHHHHHh----hcchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ--------AG-----YV-GEDVESILYKLLT----VSDYN 390 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p--fv~v~~s~l~~--------~g-----yv-G~~~~~~l~~l~~----~a~~~ 390 (684)
.+++|+||||+|||++++.++..+... =..++.+.+.. .+ |. .+. ..-...++. ..++.
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~-~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHH-SASLTAMVGGGAIPGPGE 289 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCc-cchHHHHhCCCceehhhH
Confidence 799999999999999999998776311 11122222110 00 00 000 001111221 22456
Q ss_pred hHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcc
Q 005667 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 391 v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~ 470 (684)
+..+++|||||||++.+.+. +|+.|++.||...+.|...|... ....++.+|+|.|..
T Consensus 290 l~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~--------~~pa~f~lIAa~NP~ 347 (506)
T PRK09862 290 ISLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKI--------TYPARFQLVAAMNPS 347 (506)
T ss_pred hhhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcce--------eccCCEEEEEeecCc
Confidence 77889999999999999887 99999999996666554333221 123467778887742
Q ss_pred cHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHH---
Q 005667 471 DIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ--- 547 (684)
Q Consensus 471 dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~--- 547 (684)
. .|+..... -.+.+....+++. .+.+++++|||..+.+++++.+++.+
T Consensus 348 p-------------cG~~~~~~------c~c~~~~~~~Y~~----------~ls~plLDRfdL~v~v~~~~~~~l~~~~~ 398 (506)
T PRK09862 348 P-------------TGHYQGNH------NRCTPEQTLRYLN----------RLSGPFLDRFDLSLEIPLPPPGILSKTVV 398 (506)
T ss_pred c-------------ceecCCCC------CCcCHHHHHHHHh----------hCCHhHHhhccEEEEeCCCCHHHHhcccC
Confidence 1 23211100 0112222333333 36799999999999999886554432
Q ss_pred -------HHhchHHHHHHHHHH--HHhhC------CcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005667 548 -------VLTEPKNALGKQYRK--MFQMN------GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 548 -------Il~~~l~~L~kqy~~--~l~~~------gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
|.++....-..|..+ .+... ...+.+++++.+.+.......+..+|...++++ +..++.++..
T Consensus 399 ~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLr--vARTiADL~g 476 (506)
T PRK09862 399 PGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK--VARTIADIDQ 476 (506)
T ss_pred CCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHcC
Confidence 111111111111010 00000 002356778877776654455667899988887 4445555443
Q ss_pred C
Q 005667 613 V 613 (684)
Q Consensus 613 ~ 613 (684)
+
T Consensus 477 ~ 477 (506)
T PRK09862 477 S 477 (506)
T ss_pred C
Confidence 3
No 188
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.11 E-value=3.7e-10 Score=131.15 Aligned_cols=48 Identities=35% Similarity=0.601 Sum_probs=39.8
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.+-+.|+||+++++.|..++.. ..+++|+||||||||++|+++++.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------------------------~~~~l~~G~~G~GKttla~~l~~~ 73 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------------------------RRHVMMIGSPGTGKSMLAKAMAEL 73 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------------------------CCeEEEECCCCCcHHHHHHHHHHH
Confidence 4445589999999999887741 158999999999999999999977
Q ss_pred hC
Q 005667 354 VN 355 (684)
Q Consensus 354 l~ 355 (684)
+.
T Consensus 74 l~ 75 (637)
T PRK13765 74 LP 75 (637)
T ss_pred cC
Confidence 64
No 189
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.09 E-value=9.5e-10 Score=108.78 Aligned_cols=143 Identities=25% Similarity=0.353 Sum_probs=93.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccccccccchHHHHHHHHhh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~ 386 (684)
..+||+||+|+|||++|+.+++.+... +..++.. .+..+. ..++.+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~----~~~~~~---~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE----GQSIKV---DQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc----cCcCCH---HHHHHHHHH
Confidence 679999999999999999999987432 1111111 011121 233333333
Q ss_pred cchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEec
Q 005667 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~t 466 (684)
...........|++|||+|.+... .++.||+.||. ...+.+||++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~---------------------~~~~~~~il~ 132 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE---------------------PPPNTLFILI 132 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 222112345679999999999887 89999999982 1123445554
Q ss_pred CCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHH
Q 005667 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~ 546 (684)
++.. . .+.+.+.+|.. ++.|.+++.+++.
T Consensus 133 ~~~~--~------------------------------------------------~l~~~i~sr~~-~~~~~~~~~~~~~ 161 (188)
T TIGR00678 133 TPSP--E------------------------------------------------KLLPTIRSRCQ-VLPFPPLSEEALL 161 (188)
T ss_pred ECCh--H------------------------------------------------hChHHHHhhcE-EeeCCCCCHHHHH
Confidence 3310 0 13456667774 8999999999998
Q ss_pred HHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhc
Q 005667 547 QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 547 ~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~a 585 (684)
+++... .+++++++.+++.+
T Consensus 162 ~~l~~~-------------------gi~~~~~~~i~~~~ 181 (188)
T TIGR00678 162 QWLIRQ-------------------GISEEAAELLLALA 181 (188)
T ss_pred HHHHHc-------------------CCCHHHHHHHHHHc
Confidence 888641 26899999999863
No 190
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=3.1e-09 Score=116.46 Aligned_cols=111 Identities=24% Similarity=0.306 Sum_probs=70.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+||+++++.|..++... .-++.+||+||+|+||+++|.++|+.+.+.-
T Consensus 21 iiGq~~~~~~L~~~~~~~-------------------------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 21 LFGHAAAEAALLDAYRSG-------------------------------RLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ccChHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 799999999999888521 0126799999999999999999999883210
Q ss_pred ----E-----------EEecc-----------ccc--cccccccc-------hHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 359 ----V-----------IADAT-----------TLT--QAGYVGED-------VESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 359 ----v-----------~v~~s-----------~l~--~~gyvG~~-------~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
- .-+|. ++. .+.+-+.. .-+.++++............+.|++|||
T Consensus 70 ~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDe 149 (365)
T PRK07471 70 PPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDT 149 (365)
T ss_pred CCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEec
Confidence 0 00000 000 00000000 0123444443322222234567999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+|.+... .+++||+.+|
T Consensus 150 ad~m~~~--------------aanaLLK~LE 166 (365)
T PRK07471 150 ADEMNAN--------------AANALLKVLE 166 (365)
T ss_pred hHhcCHH--------------HHHHHHHHHh
Confidence 9999887 9999999998
No 191
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.07 E-value=3.1e-09 Score=110.95 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=48.2
Q ss_pred cCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005667 521 YGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 521 ~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe 600 (684)
.+.+|+|++|+- +|.-.+++++++.+|++.... -..+.++++++..|+..+ .-+.||-+++
T Consensus 349 hGip~dllDRl~-Iirt~~y~~~e~r~Ii~~Ra~-------------~E~l~~~e~a~~~l~~~g-----t~tsLRy~vq 409 (456)
T KOG1942|consen 349 HGIPPDLLDRLL-IIRTLPYDEEEIRQIIKIRAQ-------------VEGLQVEEEALDLLAEIG-----TSTSLRYAVQ 409 (456)
T ss_pred CCCCHHHhhhee-EEeeccCCHHHHHHHHHHHHh-------------hhcceecHHHHHHHHhhc-----cchhHHHHHH
Confidence 367899999986 788899999999999986211 117889999999999952 3467888877
Q ss_pred H
Q 005667 601 N 601 (684)
Q Consensus 601 ~ 601 (684)
-
T Consensus 410 L 410 (456)
T KOG1942|consen 410 L 410 (456)
T ss_pred h
Confidence 3
No 192
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.05 E-value=1.3e-09 Score=126.34 Aligned_cols=251 Identities=18% Similarity=0.224 Sum_probs=142.7
Q ss_pred HHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHH
Q 005667 272 CKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 272 ~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA 351 (684)
-+.+-..|.|.+.+|+++.-.+.....+... +..--.-.-|+||.|.||||||.|.+.++
T Consensus 281 ~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~--------------------~g~~iRGDInILLvGDPgtaKSqlLk~v~ 340 (682)
T COG1241 281 IKSIAPSIYGHEDVKKAILLQLFGGVKKNLP--------------------DGTRIRGDIHILLVGDPGTAKSQLLKYVA 340 (682)
T ss_pred HHHhcccccCcHHHHHHHHHHhcCCCcccCC--------------------CCcccccceeEEEcCCCchhHHHHHHHHH
Confidence 3344556899999999887666411111000 00000112799999999999999999999
Q ss_pred HHhCCCEEEEeccccccccccccchHHHH-HHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 352 RYVNVPFVIADATTLTQAGYVGEDVESIL-YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 352 ~~l~~pfv~v~~s~l~~~gyvG~~~~~~l-~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.+-.. ++.+...-...|....-..... .+ +....+.+..+.+||+.|||+|++... ...+|.
T Consensus 341 ~~aPr~-vytsgkgss~~GLTAav~rd~~tge-~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aih 404 (682)
T COG1241 341 KLAPRG-VYTSGKGSSAAGLTAAVVRDKVTGE-WVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIH 404 (682)
T ss_pred hhCCce-EEEccccccccCceeEEEEccCCCe-EEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHH
Confidence 887432 2223222211221111100000 11 111123344578899999999999877 889999
Q ss_pred HHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
++||...++|..-|-.. .-...+-+++++|+.- ++ |.... .+.
T Consensus 405 EaMEQQtIsIaKAGI~a--------tLnARcsvLAAaNP~~-------Gr------yd~~~----------------~~~ 447 (682)
T COG1241 405 EAMEQQTISIAKAGITA--------TLNARCSVLAAANPKF-------GR------YDPKK----------------TVA 447 (682)
T ss_pred HHHHhcEeeecccceee--------ecchhhhhhhhhCCCC-------Cc------CCCCC----------------CHH
Confidence 99998777764333111 1112344555655421 11 11110 112
Q ss_pred hhccchHHHHcCCCcccccccceEEEc-CCCCHHHHHHHHhchHHHH------------------------HHHHHHHHh
Q 005667 511 ETVESSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQVLTEPKNAL------------------------GKQYRKMFQ 565 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d~iI~f-~pLs~eel~~Il~~~l~~L------------------------~kqy~~~l~ 565 (684)
+.+ .+.++|++|||.++.+ ..++++.-..|..+.++.. .++|... +
T Consensus 448 enI--------~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~Y-A 518 (682)
T COG1241 448 ENI--------NLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISY-A 518 (682)
T ss_pred Hhc--------CCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHH-H
Confidence 222 3789999999987555 4444443444444433332 5566653 3
Q ss_pred hCCcceecCHHHHHHHHHhcCC-------------CCCChHHHHHHHHHHHH
Q 005667 566 MNGVKLHFTENALRLIAKKAIS-------------KNTGARGLRSLLENILM 604 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~-------------~~~GAR~Lr~iIe~~l~ 604 (684)
...+...++++|.+.|.++-.. -+.-+|+|+++|+-.-.
T Consensus 519 R~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA 570 (682)
T COG1241 519 RKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEA 570 (682)
T ss_pred hccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHH
Confidence 4446678999999999986221 12448999999984433
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.04 E-value=1.3e-09 Score=99.42 Aligned_cols=87 Identities=34% Similarity=0.599 Sum_probs=57.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
.+++++||||||||++++.+++.+ +.+++.+++...... .......... .............+++|+|||++.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG-LVVAELFGHF--LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh-hHHHHHhhhh--hHhHHHHhhccCCCeEEEEeChhhh
Confidence 689999999999999999999998 788999998766421 1111000000 0000001112245789999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHh
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
... ....++..++
T Consensus 97 ~~~--------------~~~~~~~~i~ 109 (151)
T cd00009 97 SRG--------------AQNALLRVLE 109 (151)
T ss_pred hHH--------------HHHHHHHHHH
Confidence 555 6677888887
No 194
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.8e-09 Score=113.74 Aligned_cols=209 Identities=21% Similarity=0.184 Sum_probs=131.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
+.+.+.-++.+...+...+.. . .|.+++++|+||||||.+++.+.+++..+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~----------------~------------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG----------------E------------RPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC----------------C------------CCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 678888888888876522220 0 13679999999999999999999988443
Q ss_pred ----EEEEeccccccc--------------cccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCC
Q 005667 358 ----FVIADATTLTQA--------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 358 ----fv~v~~s~l~~~--------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d 419 (684)
++++||..+..+ -..|......+..+.+.- -.....-||+|||+|.|....+
T Consensus 71 ~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~---~~~~~~~IvvLDEid~L~~~~~------- 140 (366)
T COG1474 71 ANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNL---SKKGKTVIVILDEVDALVDKDG------- 140 (366)
T ss_pred ccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH---HhcCCeEEEEEcchhhhccccc-------
Confidence 899999877421 011222111111111110 1123456899999999987621
Q ss_pred CchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCC
Q 005667 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~ 499 (684)
.++-.|++..+. . ..++.+|+.+|..++...+
T Consensus 141 ----~~LY~L~r~~~~--------------------~-~~~v~vi~i~n~~~~~~~l----------------------- 172 (366)
T COG1474 141 ----EVLYSLLRAPGE--------------------N-KVKVSIIAVSNDDKFLDYL----------------------- 172 (366)
T ss_pred ----hHHHHHHhhccc--------------------c-ceeEEEEEEeccHHHHHHh-----------------------
Confidence 155555555441 0 3346666666643322222
Q ss_pred CchhhhHhHHhhhccchHHHHcCCCcccccccc-eEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHH
Q 005667 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl 578 (684)
.|-+.+++. ..|.|+||+.+|+..|+....+.- -..-.++++++
T Consensus 173 ------------------------d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~-----------~~~~~~~~~vl 217 (366)
T COG1474 173 ------------------------DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG-----------FSAGVIDDDVL 217 (366)
T ss_pred ------------------------hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh-----------ccCCCcCccHH
Confidence 233334442 248999999999999998743321 11456899999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005667 579 RLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 579 ~~La~~ay~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
+.++..+....+.||---.+++....-|-.
T Consensus 218 ~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 218 KLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 999998767777788877777776665543
No 195
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=2e-09 Score=115.16 Aligned_cols=105 Identities=21% Similarity=0.328 Sum_probs=70.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
|+||+.+++.+...+... .-++.+||+||+|+|||++|+++|+.+.+.
T Consensus 6 i~g~~~~~~~l~~~~~~~-------------------------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~ 54 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKN-------------------------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKS 54 (313)
T ss_pred ccCcHHHHHHHHHHHHcC-------------------------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 799999999998887410 012677999999999999999999987332
Q ss_pred -------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 358 -------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 358 -------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+..+... +...++ -..++++..........+...|++|||+|++... .+++||
T Consensus 55 ~~~~h~D~~~~~~~---~~~~i~---v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naLL 114 (313)
T PRK05564 55 QQREYVDIIEFKPI---NKKSIG---VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAFL 114 (313)
T ss_pred CCCCCCCeEEeccc---cCCCCC---HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHHH
Confidence 2222110 011111 1234554442211111346679999999999887 999999
Q ss_pred HHHh
Q 005667 431 KMLE 434 (684)
Q Consensus 431 ~~LE 434 (684)
+.||
T Consensus 115 K~LE 118 (313)
T PRK05564 115 KTIE 118 (313)
T ss_pred HHhc
Confidence 9999
No 196
>PRK09087 hypothetical protein; Validated
Probab=99.01 E-value=2.7e-09 Score=109.48 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=53.7
Q ss_pred Ccccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 005667 524 IPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLEN 601 (684)
Q Consensus 524 ~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~ 601 (684)
.|+|++|+. .++.+.+++.+++.+|+++.+.. . .+.++++++++|+++. ....|++..++.+
T Consensus 135 ~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-----------~--~~~l~~ev~~~La~~~---~r~~~~l~~~l~~ 198 (226)
T PRK09087 135 LPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD-----------R--QLYVDPHVVYYLVSRM---ERSLFAAQTIVDR 198 (226)
T ss_pred cccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHh---hhhHHHHHHHHHH
Confidence 488899994 68999999999999999874322 1 6789999999999974 3556888888877
Q ss_pred HHHHHHh
Q 005667 602 ILMDAMY 608 (684)
Q Consensus 602 ~l~~al~ 608 (684)
+-..++.
T Consensus 199 L~~~~~~ 205 (226)
T PRK09087 199 LDRLALE 205 (226)
T ss_pred HHHHHHH
Confidence 6655543
No 197
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.00 E-value=9.1e-09 Score=117.90 Aligned_cols=230 Identities=18% Similarity=0.265 Sum_probs=132.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCC-Ccccc-cccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD-DDTVE-LEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
++|-+..-+.+...+..+-.-++.....++........++...+ -.... .+..-+||+||||-|||+||+.||+.+|.
T Consensus 273 LLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGY 352 (877)
T KOG1969|consen 273 LLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGY 352 (877)
T ss_pred HhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcCc
Confidence 56777777777777653333333322222211111111110001 11112 23477789999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh--
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-- 434 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE-- 434 (684)
..+.+|+++-... ..+...+..+.......-+...+..|+|||||-..+. ..+.||.++.
T Consensus 353 sVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~--------------~Vdvilslv~a~ 414 (877)
T KOG1969|consen 353 SVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA--------------AVDVILSLVKAT 414 (877)
T ss_pred eEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH--------------HHHHHHHHHHhh
Confidence 9999999976532 2333444444443322112356789999999998765 8899999987
Q ss_pred CceeeecCC---CCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhh
Q 005667 435 GTVVNVPEK---GARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 435 g~~v~Vp~~---G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (684)
+....=+.. +..++.++ ..-++.||-||.--+
T Consensus 415 ~k~~~Gkq~~~~~~rkkkr~---~~L~RPIICICNdLY------------------------------------------ 449 (877)
T KOG1969|consen 415 NKQATGKQAKKDKKRKKKRS---KLLTRPIICICNDLY------------------------------------------ 449 (877)
T ss_pred cchhhcCcccchhhhhhhcc---ccccCCEEEEecCcc------------------------------------------
Confidence 322211111 11111111 334566776764221
Q ss_pred hccchHHHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCC
Q 005667 512 TVESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKN 589 (684)
Q Consensus 512 ~v~~~dl~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~ 589 (684)
.|.|+ .-+..++.|.+.+..-+++-|+..++ .+ .+.++..++..|++..
T Consensus 450 ------------aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~-----------rE--~mr~d~~aL~~L~el~---- 500 (877)
T KOG1969|consen 450 ------------APALRPLRPFAEIIAFVPPSQSRLVERLNEICH-----------RE--NMRADSKALNALCELT---- 500 (877)
T ss_pred ------------chhhhhcccceEEEEecCCChhHHHHHHHHHHh-----------hh--cCCCCHHHHHHHHHHh----
Confidence 12221 12455899999999877754443221 11 6778999999999963
Q ss_pred CChHHHHHHHHHH
Q 005667 590 TGARGLRSLLENI 602 (684)
Q Consensus 590 ~GAR~Lr~iIe~~ 602 (684)
.-.+|+.|..+
T Consensus 501 --~~DIRsCINtL 511 (877)
T KOG1969|consen 501 --QNDIRSCINTL 511 (877)
T ss_pred --cchHHHHHHHH
Confidence 13566666653
No 198
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=2.6e-09 Score=111.51 Aligned_cols=199 Identities=21% Similarity=0.317 Sum_probs=119.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH------hCCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY------VNVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~------l~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLf 400 (684)
.++||.||+|.||+.||+.|-+. +..+|+.+||..+.. +..+|.- .+.++..-....+.+..+.+|.||
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCceEe
Confidence 68999999999999999998433 367899999998853 1233332 122222222233556678899999
Q ss_pred EccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcc
Q 005667 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 401 IDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~ 480 (684)
+|||..|..+ -|..||+.+|++.+. | - +..+.+.-|+.-| +|+..||...+.++.
T Consensus 288 ldeigelgad--------------eqamllkaieekrf~-p-f-----gsdr~v~sdfqli----agtvrdlrq~vaeg~ 342 (531)
T COG4650 288 LDEIGELGAD--------------EQAMLLKAIEEKRFY-P-F-----GSDRQVSSDFQLI----AGTVRDLRQLVAEGK 342 (531)
T ss_pred hHhhhhcCcc--------------HHHHHHHHHHhhccC-C-C-----CCccccccchHHh----hhhHHHHHHHHhccc
Confidence 9999999877 899999999954432 1 1 1111122222222 667667777776665
Q ss_pred ccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceE-EEcCCCC--HHHHHHHHhchHHHHH
Q 005667 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL-VSLLALT--ENQLVQVLTEPKNALG 557 (684)
Q Consensus 481 ~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~i-I~f~pLs--~eel~~Il~~~l~~L~ 557 (684)
|+. +|..||+.. +.++.|. .||++--+.-.+.
T Consensus 343 fre------------------------------------------dl~arinlwtf~lpgl~qr~ediepnldyele--- 377 (531)
T COG4650 343 FRE------------------------------------------DLYARINLWTFTLPGLRQRQEDIEPNLDYELE--- 377 (531)
T ss_pred hHH------------------------------------------HHHHhhheeeeeccccccCccccCCCccHHHH---
Confidence 543 334444321 2222221 2333222222111
Q ss_pred HHHHHHHhhCCcceecCHHHHHHHHHhcC----CCCCChHHHHHHHHHHHH
Q 005667 558 KQYRKMFQMNGVKLHFTENALRLIAKKAI----SKNTGARGLRSLLENILM 604 (684)
Q Consensus 558 kqy~~~l~~~gi~l~i~eeAl~~La~~ay----~~~~GAR~Lr~iIe~~l~ 604 (684)
..-...|-.+.+..++.+.....+- .|.++-|+|..-|.++..
T Consensus 378 ----rha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmat 424 (531)
T COG4650 378 ----RHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 (531)
T ss_pred ----HHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHH
Confidence 1123346678888887776665443 478889999988877643
No 199
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=8.7e-09 Score=110.77 Aligned_cols=112 Identities=22% Similarity=0.276 Sum_probs=70.5
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|+||+++++.+..++... .-++.+||+||+|+||+++|.++|+.+.+.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~-------------------------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQN-------------------------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HhCCHHHHHHHHHHHHHhC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4799999999999988511 013799999999999999999999987321
Q ss_pred ------------------EEEEeccccccc--------cccc-------cchHHHHHHHHhhcchhhHhhcCCEEEEccc
Q 005667 358 ------------------FVIADATTLTQA--------GYVG-------EDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 358 ------------------fv~v~~s~l~~~--------gyvG-------~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
+..+........ +..| .---..++++..........+...|++||++
T Consensus 54 ~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~a 133 (314)
T PRK07399 54 GSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDA 133 (314)
T ss_pred CCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEch
Confidence 111111100000 0000 0000123333222211111346789999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 405 DkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|+|... .+++||+.||
T Consensus 134 e~m~~~--------------aaNaLLK~LE 149 (314)
T PRK07399 134 ETMNEA--------------AANALLKTLE 149 (314)
T ss_pred hhcCHH--------------HHHHHHHHHh
Confidence 999887 9999999999
No 200
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.99 E-value=5.3e-09 Score=114.43 Aligned_cols=176 Identities=23% Similarity=0.303 Sum_probs=110.5
Q ss_pred hcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+...++||+..|..|.-...++ ...++|+.|+.|||||+++|+||..|
T Consensus 15 pf~aivGqd~lk~aL~l~av~P--------------------------------~iggvLI~G~kGtaKSt~~Rala~LL 62 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDP--------------------------------QIGGALIAGEKGTAKSTLARALADLL 62 (423)
T ss_pred chhhhcCchHHHHHHhhhhccc--------------------------------ccceeEEecCCCccHHHHHHHHHHhC
Confidence 3445899999999775443211 13799999999999999999999998
Q ss_pred CCCEEEEec----cc----------------------------cc-------ccccccc-chHHHHHH-HHhhcchhhHh
Q 005667 355 NVPFVIADA----TT----------------------------LT-------QAGYVGE-DVESILYK-LLTVSDYNVAA 393 (684)
Q Consensus 355 ~~pfv~v~~----s~----------------------------l~-------~~gyvG~-~~~~~l~~-l~~~a~~~v~~ 393 (684)
..--+...| .. +. +...+|. ++.+.+.. .-.-.++.+..
T Consensus 63 p~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~ 142 (423)
T COG1239 63 PEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR 142 (423)
T ss_pred CccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh
Confidence 321111122 00 00 0112232 22222221 11123667889
Q ss_pred hcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHH
Q 005667 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIE 473 (684)
Q Consensus 394 a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe 473 (684)
+++|||++||+..|... +|+.||.+++...-.|..+|.... .-.++++|.|.|...
T Consensus 143 AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~--------hpa~fvligTmNPEe-- 198 (423)
T COG1239 143 ANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIR--------HPARFLLIGTMNPEE-- 198 (423)
T ss_pred ccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeec--------cCccEEEEeecCccc--
Confidence 99999999999999887 999999999843222222332111 123578888877421
Q ss_pred HHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCC-CHHHHHHHHhch
Q 005667 474 KTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLAL-TENQLVQVLTEP 552 (684)
Q Consensus 474 ~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pL-s~eel~~Il~~~ 552 (684)
..++|.|+.||...|..... +.++..+|+.+.
T Consensus 199 -----------------------------------------------GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~ 231 (423)
T COG1239 199 -----------------------------------------------GELRPQLLDRFGLEVDTHYPLDLEERVEIIRRR 231 (423)
T ss_pred -----------------------------------------------cccchhhHhhhcceeeccCCCCHHHHHHHHHHH
Confidence 12779999999988766555 557777777764
Q ss_pred H
Q 005667 553 K 553 (684)
Q Consensus 553 l 553 (684)
.
T Consensus 232 ~ 232 (423)
T COG1239 232 L 232 (423)
T ss_pred H
Confidence 3
No 201
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.99 E-value=3.6e-09 Score=111.99 Aligned_cols=86 Identities=30% Similarity=0.412 Sum_probs=60.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC------------------------CCEEEEeccccccccccccchHHHHHHHHhh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~------------------------~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~ 386 (684)
+.+||+||||+|||++|.++|+.+. ..++.++.++..... + ....++++...
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i---~~~~vr~~~~~ 100 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-I---IVEQVRELAEF 100 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-c---hHHHHHHHHHH
Confidence 3599999999999999999999986 346666665543111 1 12334444333
Q ss_pred cchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
..........-|++|||+|.|..+ .+++|++.||
T Consensus 101 ~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lE 134 (325)
T COG0470 101 LSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLE 134 (325)
T ss_pred hccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhc
Confidence 221111245679999999999987 9999999998
No 202
>PRK04132 replication factor C small subunit; Provisional
Probab=98.99 E-value=3.7e-09 Score=125.66 Aligned_cols=170 Identities=21% Similarity=0.280 Sum_probs=118.2
Q ss_pred ccccccceEEEEc--cCCCcHHHHHHHHHHHh-----CCCEEEEeccccccccccccc-hHHHHHHHHhhcchhhHhhcC
Q 005667 325 TVELEKSNILLMG--PTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 325 ~~~~p~~~vLL~G--PpGTGKT~LAraIA~~l-----~~pfv~v~~s~l~~~gyvG~~-~~~~l~~l~~~a~~~v~~a~~ 396 (684)
++..|.-+-+..| |.+.|||++|+++|+.+ +.+++.+|+++.. |.+ +...+.......+. .....
T Consensus 559 ~~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----gid~IR~iIk~~a~~~~~--~~~~~ 631 (846)
T PRK04132 559 DLHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-----GINVIREKVKEFARTKPI--GGASF 631 (846)
T ss_pred EeccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----cHHHHHHHHHHHHhcCCc--CCCCC
Confidence 4456677778889 99999999999999998 4579999998743 211 12222222222211 11124
Q ss_pred CEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHH
Q 005667 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 397 gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i 476 (684)
.|++|||+|.|... .|++|++.||. ...++.||+++|...
T Consensus 632 KVvIIDEaD~Lt~~--------------AQnALLk~lEe---------------------p~~~~~FILi~N~~~----- 671 (846)
T PRK04132 632 KIIFLDEADALTQD--------------AQQALRRTMEM---------------------FSSNVRFILSCNYSS----- 671 (846)
T ss_pred EEEEEECcccCCHH--------------HHHHHHHHhhC---------------------CCCCeEEEEEeCChh-----
Confidence 69999999999887 99999999992 123466777665211
Q ss_pred HhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHH
Q 005667 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (684)
Q Consensus 477 ~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L 556 (684)
.+.|++++|.. ++.|.+++.+++.+++...+
T Consensus 672 ---------------------------------------------kIi~tIrSRC~-~i~F~~ls~~~i~~~L~~I~--- 702 (846)
T PRK04132 672 ---------------------------------------------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIA--- 702 (846)
T ss_pred ---------------------------------------------hCchHHhhhce-EEeCCCCCHHHHHHHHHHHH---
Confidence 14477788854 79999999999998877521
Q ss_pred HHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 557 GKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 557 ~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+ .. .+.+++++++.|+..+ +++.|..-+.+|.+.
T Consensus 703 -~-------~E--gi~i~~e~L~~Ia~~s---~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 703 -E-------NE--GLELTEEGLQAILYIA---EGDMRRAINILQAAA 736 (846)
T ss_pred -H-------hc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 1 12 4668999999999864 666788878887654
No 203
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.98 E-value=8.3e-09 Score=116.64 Aligned_cols=254 Identities=20% Similarity=0.280 Sum_probs=143.8
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraI 350 (684)
|...|-..|.|.+.+|.-|.-.+.- +.++. ++ ...+ -.-.-||+++|.|||||+-+.++.
T Consensus 339 lv~Sl~PsIyGhe~VK~GilL~LfG-------Gv~K~--a~---eg~~--------lRGDinv~iVGDPgt~KSQfLk~v 398 (764)
T KOG0480|consen 339 LVNSLFPSIYGHELVKAGILLSLFG-------GVHKS--AG---EGTS--------LRGDINVCIVGDPGTGKSQFLKAV 398 (764)
T ss_pred HHHhhCccccchHHHHhhHHHHHhC-------Ccccc--CC---CCcc--------ccCCceEEEeCCCCccHHHHHHHH
Confidence 4455556699999999988766531 11111 10 0000 011269999999999999999999
Q ss_pred HHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+..+-.. ++++...-..+|+.-.-+.+-...-|....+.+..+.+||..|||+||+..+ -|.+|+
T Consensus 399 ~~fsPR~-vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAih 463 (764)
T KOG0480|consen 399 CAFSPRS-VYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIH 463 (764)
T ss_pred hccCCcc-eEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHH
Confidence 8887432 2233222211222111000000000111112234567899999999999776 689999
Q ss_pred HHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
++||...+.|..-|-.. .++++ .-+|+++|+.+ ++.+ ....+.
T Consensus 464 EAMEQQtISIaKAGv~a-------TLnAR-tSIlAAANPv~-------GhYd----------------------R~ktl~ 506 (764)
T KOG0480|consen 464 EAMEQQTISIAKAGVVA-------TLNAR-TSILAAANPVG-------GHYD----------------------RKKTLR 506 (764)
T ss_pred HHHHhheehheecceEE-------eecch-hhhhhhcCCcC-------Cccc----------------------cccchh
Confidence 99998888774333221 23332 33455555432 0000 011233
Q ss_pred hhccchHHHHcCCCcccccccceE-EEcCCCCHHHHHHHHhchHH-----------------HHHHHHHHHHhhCCccee
Q 005667 511 ETVESSDLIAYGLIPEFVGRFPVL-VSLLALTENQLVQVLTEPKN-----------------ALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d~i-I~f~pLs~eel~~Il~~~l~-----------------~L~kqy~~~l~~~gi~l~ 572 (684)
+.+. +.+++++|||.+ |.+...++..=..|.++.++ +..++|....+ .+.-.
T Consensus 507 eNi~--------msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR--~~~P~ 576 (764)
T KOG0480|consen 507 ENIN--------MSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYAR--NFKPK 576 (764)
T ss_pred hhcC--------CCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHH--hcCcc
Confidence 3332 789999999976 45566666443444333221 22344444222 55677
Q ss_pred cCHHHHHHHHHhcC--------------CCCCChHHHHHHHHHHHHHHHhc
Q 005667 573 FTENALRLIAKKAI--------------SKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 573 i~eeAl~~La~~ay--------------~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
++.+|-+.|.++ | .|...+|+|+++|+ +.+|+.+
T Consensus 577 ls~ea~~~lve~-Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsEA~Ar 624 (764)
T KOG0480|consen 577 LSKEASEMLVEK-YKGLRQRDAQGNNRSSYRITVRQLESLIR--LSEARAR 624 (764)
T ss_pred ccHHHHHHHHHH-HHHHHHhhccccCcccccccHHHHHHHHH--HHHHHHh
Confidence 899999988886 3 35677999999997 4455444
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.97 E-value=8.5e-09 Score=112.05 Aligned_cols=60 Identities=23% Similarity=0.191 Sum_probs=46.0
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~- 356 (684)
.|+|+++++..+...+..... + . ......++|+||||+|||++|++|++.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~----g--------~--------------~~~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQ----G--------L--------------EERKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHh----c--------C--------------CCCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 589999999999887752211 0 0 011267899999999999999999999965
Q ss_pred ------CEEEEec
Q 005667 357 ------PFVIADA 363 (684)
Q Consensus 357 ------pfv~v~~ 363 (684)
+++.+..
T Consensus 106 s~t~eG~~Y~~~~ 118 (361)
T smart00763 106 SKTPEGRRYTFKW 118 (361)
T ss_pred cccccCceEEEEe
Confidence 7888876
No 205
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.96 E-value=7.6e-09 Score=119.38 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=126.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccccccccccc-chHHHHHHHH-hhcchhhHhhcCCEEEEccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGE-DVESILYKLL-TVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~--pfv~v~~s~l~~~gyvG~-~~~~~l~~l~-~~a~~~v~~a~~gVLfIDEIDk 406 (684)
.+|||.|+.||+|++++++++..+.. ||+.+-.+. ++...+|- +.+..+..=. ...++.+..+++|||||||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~-t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGI-ADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCC-cHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 79999999999999999999999854 776554432 22334553 2222222111 1345678889999999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCC
Q 005667 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 L~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IG 486 (684)
+.+. +++.|++.||...++|...|..... -.++++|++-+.. .
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR~G~s~~~--------Pa~F~LIat~~~~---------------~ 147 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLERDGLALRL--------PARFGLVALDEGA---------------E 147 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEECCcEEec--------CCCcEEEecCCCh---------------h
Confidence 9988 9999999999777776444433222 2345556542100 0
Q ss_pred cCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhh
Q 005667 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~ 566 (684)
..+.+++.+++||+..|.+..++..+..+.... ..-+...++.+.
T Consensus 148 --------------------------------~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~--~~~I~~AR~rl~- 192 (584)
T PRK13406 148 --------------------------------EDERAPAALADRLAFHLDLDGLALRDAREIPID--ADDIAAARARLP- 192 (584)
T ss_pred --------------------------------cccCCCHHhHhheEEEEEcCCCChHHhcccCCC--HHHHHHHHHHHc-
Confidence 012477889999999999999988776431111 111222233331
Q ss_pred CCcceecCHHHHHHHHHhcCCCCC-ChHHHHHHHHH
Q 005667 567 NGVKLHFTENALRLIAKKAISKNT-GARGLRSLLEN 601 (684)
Q Consensus 567 ~gi~l~i~eeAl~~La~~ay~~~~-GAR~Lr~iIe~ 601 (684)
.+.++++.++++++.+...+. +.|..-.++.-
T Consensus 193 ---~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llra 225 (584)
T PRK13406 193 ---AVGPPPEAIAALCAAAAALGIASLRAPLLALRA 225 (584)
T ss_pred ---cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 577899999998876554443 55776666653
No 206
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=5.9e-09 Score=112.65 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=67.9
Q ss_pred ccC-hHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 279 VIG-QERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 279 VvG-Qd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
|+| |+.+++.+...+... ..++.+||+||+|+||+++|+++|+.+.++
T Consensus 7 i~~~q~~~~~~L~~~~~~~-------------------------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-------------------------------RLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 566 999999998887410 013677999999999999999999987431
Q ss_pred E--EE------Eec--------cccccccccccch-HHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCC
Q 005667 358 F--VI------ADA--------TTLTQAGYVGEDV-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDV 420 (684)
Q Consensus 358 f--v~------v~~--------s~l~~~gyvG~~~-~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~ 420 (684)
- -. -+| .++......|... -..++++..........+...|++|||+|.+...
T Consensus 56 ~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~---------- 125 (329)
T PRK08058 56 ERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS---------- 125 (329)
T ss_pred CCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH----------
Confidence 0 00 000 0110000001110 1233343332111111245679999999999887
Q ss_pred chHHHHHHHHHHHh
Q 005667 421 SGEGVQQALLKMLE 434 (684)
Q Consensus 421 ~~e~vq~~LL~~LE 434 (684)
.+++||+.||
T Consensus 126 ----a~NaLLK~LE 135 (329)
T PRK08058 126 ----AANSLLKFLE 135 (329)
T ss_pred ----HHHHHHHHhc
Confidence 9999999999
No 207
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.95 E-value=2.4e-08 Score=103.15 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=108.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---~ 355 (684)
++|.++.|+.|.+-....... .|..|+||+|+.|||||++++++...+ +
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G----------------------------~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQG----------------------------LPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcC----------------------------CCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 699999999888766532221 234899999999999999999998877 4
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..++.+.-.++.. ...++. .+...+ .+=|||+|++- -+. ++.-...|..+|||
T Consensus 81 LRlIev~k~~L~~-------l~~l~~-~l~~~~------~kFIlf~DDLs---Fe~----------~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 81 LRLIEVSKEDLGD-------LPELLD-LLRDRP------YKFILFCDDLS---FEE----------GDTEYKALKSVLEG 133 (249)
T ss_pred ceEEEECHHHhcc-------HHHHHH-HHhcCC------CCEEEEecCCC---CCC----------CcHHHHHHHHHhcC
Confidence 5677777766542 123332 223222 34599999743 221 11256778888996
Q ss_pred ceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccc
Q 005667 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.+- -...|+++.+|+|--.| |.+...+..-. .+ +.+.+
T Consensus 134 gle-----------------~~P~NvliyATSNRRHL---v~E~~~d~~~~-------------~~---------~eih~ 171 (249)
T PF05673_consen 134 GLE-----------------ARPDNVLIYATSNRRHL---VPESFSDREDI-------------QD---------DEIHP 171 (249)
T ss_pred ccc-----------------cCCCcEEEEEecchhhc---cchhhhhccCC-------------Cc---------cccCc
Confidence 542 23467888888884331 22111100000 00 01111
Q ss_pred hHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchH
Q 005667 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 516 ~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l 553 (684)
.|.++.. -.|.+||..+|.|.+++.++..+|++..+
T Consensus 172 ~d~~eEk--lSLsDRFGL~l~F~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 172 SDTIEEK--LSLSDRFGLWLSFYPPDQEEYLAIVRHYA 207 (249)
T ss_pred chHHHHH--HhHHHhCCcEEEecCCCHHHHHHHHHHHH
Confidence 1211111 24678999999999999999999998743
No 208
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.95 E-value=3.5e-10 Score=106.75 Aligned_cols=70 Identities=37% Similarity=0.747 Sum_probs=53.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
.+|||+|++||||+++|++|..... .+|+.++|..+. .++++. +.+|+|||+|||.+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~~-------a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLEQ-------AKGGTLYLKNIDRL 81 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHHH-------CTTSEEEEECGCCS
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHHH-------cCCCEEEECChHHC
Confidence 7999999999999999999988774 366666765432 122222 46799999999999
Q ss_pred chhccccccCCCCchHHHHHHHHHHHh
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
..+ .|..|+..++
T Consensus 82 ~~~--------------~Q~~L~~~l~ 94 (138)
T PF14532_consen 82 SPE--------------AQRRLLDLLK 94 (138)
T ss_dssp -HH--------------HHHHHHHHHH
T ss_pred CHH--------------HHHHHHHHHH
Confidence 998 9999999998
No 209
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.92 E-value=1.5e-08 Score=98.85 Aligned_cols=104 Identities=29% Similarity=0.420 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC---
Q 005667 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP--- 357 (684)
Q Consensus 281 GQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p--- 357 (684)
||+++++.|..++.... -+..+||+||+|+||+++|+++|+.+...
T Consensus 1 gq~~~~~~L~~~~~~~~-------------------------------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-------------------------------LPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---------------------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred CcHHHHHHHHHHHHcCC-------------------------------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 89999999998885210 12678999999999999999999887321
Q ss_pred --------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccC
Q 005667 358 --------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 358 --------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~ 417 (684)
++.++..... ..++ ...++.+..........+..-|++|||+|+|...
T Consensus 50 ~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~--~~i~---i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------- 117 (162)
T PF13177_consen 50 EDPCGECRSCRRIEEGNHPDFIIIKPDKKK--KSIK---IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------- 117 (162)
T ss_dssp TT--SSSHHHHHHHTT-CTTEEEEETTTSS--SSBS---HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-------
T ss_pred CCCCCCCHHHHHHHhccCcceEEEeccccc--chhh---HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-------
Confidence 2222222110 0112 2344444443322222345679999999999988
Q ss_pred CCCchHHHHHHHHHHHh
Q 005667 418 RDVSGEGVQQALLKMLE 434 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LE 434 (684)
.+++||+.||
T Consensus 118 -------a~NaLLK~LE 127 (162)
T PF13177_consen 118 -------AQNALLKTLE 127 (162)
T ss_dssp -------HHHHHHHHHH
T ss_pred -------HHHHHHHHhc
Confidence 9999999999
No 210
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.90 E-value=6.1e-09 Score=118.47 Aligned_cols=246 Identities=19% Similarity=0.305 Sum_probs=135.9
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraI 350 (684)
|...+...|+|.|.+|+.+.-.+.. +.++.... ++. -...-|+||+|.||||||.+.+.+
T Consensus 423 La~SiAPsIye~edvKkglLLqLfG-------Gt~k~~~~--~~~-----------~R~~INILL~GDPGtsKSqlLqyv 482 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLFG-------GTRKEDEK--SGR-----------FRGDINILLVGDPGTSKSQLLQYC 482 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHhc-------CCcccccc--ccc-----------ccccceEEEecCCCcCHHHHHHHH
Confidence 4445555689999999988766541 11111000 000 011269999999999999999999
Q ss_pred HHHhCCCEEEEecccccccc---ccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHH
Q 005667 351 ARYVNVPFVIADATTLTQAG---YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~~g---yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~ 427 (684)
++.+-.- ++.+...-...| |+-.+. ..+++.-. .+.+..+.+||..|||+|||..+ .++
T Consensus 483 ~~l~pRg-~yTSGkGsSavGLTayVtrd~--dtkqlVLe-sGALVLSD~GiCCIDEFDKM~dS--------------trS 544 (804)
T KOG0478|consen 483 HRLLPRG-VYTSGKGSSAVGLTAYVTKDP--DTRQLVLE-SGALVLSDNGICCIDEFDKMSDS--------------TRS 544 (804)
T ss_pred HHhCCcc-eeecCCccchhcceeeEEecC--ccceeeee-cCcEEEcCCceEEchhhhhhhHH--------------HHH
Confidence 9988322 222221111111 111110 11111111 12233467899999999999877 899
Q ss_pred HHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHh
Q 005667 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~ 507 (684)
.|+++||...++|+.-|..... +++ .-+|+++|..+ +.-..+ .
T Consensus 545 vLhEvMEQQTvSIAKAGII~sL-------NAR-~SVLAaANP~~-----------skynp~------------------k 587 (804)
T KOG0478|consen 545 VLHEVMEQQTLSIAKAGIIASL-------NAR-CSVLAAANPIR-----------SKYNPN------------------K 587 (804)
T ss_pred HHHHHHHHhhhhHhhcceeeec-------ccc-ceeeeeecccc-----------ccCCCC------------------C
Confidence 9999999888888766654433 222 33455555321 000111 1
Q ss_pred HHhhhccchHHHHcCCCcccccccceEE-EcCCCCHHHHHHHHhc----hHH------------HHHHHHHHHHhhCCcc
Q 005667 508 SLMETVESSDLIAYGLIPEFVGRFPVLV-SLLALTENQLVQVLTE----PKN------------ALGKQYRKMFQMNGVK 570 (684)
Q Consensus 508 ~ll~~v~~~dl~~~~f~PeLl~R~d~iI-~f~pLs~eel~~Il~~----~l~------------~L~kqy~~~l~~~gi~ 570 (684)
.+.+.+ .+.|.|++|||.|. .|.+.++.-=.++..+ +.. .+.+.|.. .+.+.+.
T Consensus 588 ~i~eNI--------~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~-yArk~i~ 658 (804)
T KOG0478|consen 588 SIIENI--------NLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIR-YARKNIH 658 (804)
T ss_pred chhhcc--------CCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHH-HHhccCC
Confidence 223333 27899999999874 5555555311222221 111 12233333 3445566
Q ss_pred eecCHHHHHHHHHhcCC-----CCCC-----hHHHHHHHH
Q 005667 571 LHFTENALRLIAKKAIS-----KNTG-----ARGLRSLLE 600 (684)
Q Consensus 571 l~i~eeAl~~La~~ay~-----~~~G-----AR~Lr~iIe 600 (684)
..++++|...+....++ ..-| .|.|+.++.
T Consensus 659 p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiR 698 (804)
T KOG0478|consen 659 PALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIR 698 (804)
T ss_pred ccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHH
Confidence 77899999988875332 1111 466776665
No 211
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.88 E-value=7.8e-08 Score=99.63 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=52.2
Q ss_pred ccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005667 526 EFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 526 eLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~ 605 (684)
.+.+|+...+.+++++.+|+.+++...+... .......+++++++.|.+.+ .+..|.+..+...++..
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~---------g~~~~~~~~~~~~~~i~~~s---~G~p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERA---------GNRDAPVFSEGAFDAIHRFS---RGIPRLINILCDRLLLS 245 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHc---------CCCCCCCcCHHHHHHHHHHc---CCcccHHHHHHHHHHHH
Confidence 4677888889999999999999887633211 01113468999999999964 34468888888888777
Q ss_pred HHhc
Q 005667 606 AMYE 609 (684)
Q Consensus 606 al~e 609 (684)
+..+
T Consensus 246 a~~~ 249 (269)
T TIGR03015 246 AFLE 249 (269)
T ss_pred HHHc
Confidence 6553
No 212
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.86 E-value=1.4e-09 Score=117.61 Aligned_cols=257 Identities=21% Similarity=0.290 Sum_probs=126.9
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraI 350 (684)
+.+.+...|+|.+.+|+.+.-.+.. +..+. ..+..-....-|+||+|.||||||.|.+.+
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~-------~~~~~-------------~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~ 77 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFG-------GVEKN-------------DPDGTRIRGNIHILLVGDPGTGKSQLLKYV 77 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT---------SCC-------------CCT-TEE--S--EEEECSCHHCHHHHHHCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHh-------ccccc-------------cccccccccccceeeccchhhhHHHHHHHH
Confidence 5566777799999999877644421 11000 000011122379999999999999999987
Q ss_pred HHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHH
Q 005667 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
++.. ..-+.+++...+..|....-.......-..-..+.+..+.+||++|||+|++... ..+.|+
T Consensus 78 ~~~~-pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------------~~~~l~ 142 (331)
T PF00493_consen 78 AKLA-PRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------------DRDALH 142 (331)
T ss_dssp CCT--SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------------HHHHHH
T ss_pred HhhC-CceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch--------------HHHHHH
Confidence 6554 3345555554433333221100000000011123344578899999999999887 899999
Q ss_pred HHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHh
Q 005667 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll 510 (684)
++||...+.|...|- ..... .++.+++++|+.. ++++.. ..+.
T Consensus 143 eaMEqq~isi~kagi-------~~~l~-ar~svlaa~NP~~-------g~~~~~----------------------~~~~ 185 (331)
T PF00493_consen 143 EAMEQQTISIAKAGI-------VTTLN-ARCSVLAAANPKF-------GRYDPN----------------------KSLS 185 (331)
T ss_dssp HHHHCSCEEECTSSS-------EEEEE----EEEEEE--TT---------S-TT----------------------S-CG
T ss_pred HHHHcCeeccchhhh-------ccccc-chhhhHHHHhhhh-------hhcchh----------------------hhhH
Confidence 999977777643331 12333 3455666666431 111110 0111
Q ss_pred hhccchHHHHcCCCcccccccceEEEc-CCCCHHHHHHHHh----chHHH------------------HHHHHHHHHhhC
Q 005667 511 ETVESSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQVLT----EPKNA------------------LGKQYRKMFQMN 567 (684)
Q Consensus 511 ~~v~~~dl~~~~f~PeLl~R~d~iI~f-~pLs~eel~~Il~----~~l~~------------------L~kqy~~~l~~~ 567 (684)
+.+ .+.++|++|||.++.+ .+.+++.=..+.+ ..... +.++|....+ .
T Consensus 186 ~ni--------~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar-~ 256 (331)
T PF00493_consen 186 ENI--------NLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYAR-Q 256 (331)
T ss_dssp CCT---------S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHH-H
T ss_pred Hhc--------ccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHH-h
Confidence 111 2779999999988665 4455333223332 22111 1133443222 2
Q ss_pred CcceecCHHHHHHHHHhcCC-----------CCCChHHHHHHHHHHHHHHHhcC
Q 005667 568 GVKLHFTENALRLIAKKAIS-----------KNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 568 gi~l~i~eeAl~~La~~ay~-----------~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
.+...+++++.+.|.++... .+..+|.|+.+|+ +..+..++
T Consensus 257 ~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIR--LseA~AKl 308 (331)
T PF00493_consen 257 NIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIR--LSEAHAKL 308 (331)
T ss_dssp HC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHH--HHHHHHHC
T ss_pred hcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHH--HHHHHHHH
Confidence 34667999999999886221 1345677788776 33444443
No 213
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.8e-08 Score=113.60 Aligned_cols=194 Identities=23% Similarity=0.314 Sum_probs=125.5
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 328 LEKSNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 328 ~p~~~vLL~GPpGTGKT~LAraIA~~l~----~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
....++||.||+|+|||.|++++++++. ..+..++|+.+.... -+...+.+...|..+-+ .+|+||+||+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~----~~PSiIvLDd 502 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALW----YAPSIIVLDD 502 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHHh----hCCcEEEEcc
Confidence 3458999999999999999999999984 347788998886433 22234555666655433 5789999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
+|.+....+..+++.++-.++....|.+++.... -+.+.+.||++++.. .
T Consensus 503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~------------------~~~~~ia~Iat~qe~--q---------- 552 (952)
T KOG0735|consen 503 LDCLASASSNENGQDGVVSERLAAFLNQVIKIYL------------------KRNRKIAVIATGQEL--Q---------- 552 (952)
T ss_pred hhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH------------------ccCcEEEEEEechhh--h----------
Confidence 9999874333333333222223333334443110 112236778776511 0
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~ 563 (684)
+ ...++ +.| .+|+.++.++++...+..+|++..+...
T Consensus 553 --------------------t-l~~~L------------~s~---~~Fq~~~~L~ap~~~~R~~IL~~~~s~~------- 589 (952)
T KOG0735|consen 553 --------------------T-LNPLL------------VSP---LLFQIVIALPAPAVTRRKEILTTIFSKN------- 589 (952)
T ss_pred --------------------h-cChhh------------cCc---cceEEEEecCCcchhHHHHHHHHHHHhh-------
Confidence 0 00000 112 2789999999999999999999743322
Q ss_pred HhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005667 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 564 l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
....+.+-++.++.+ ..++-++.|.-.+++++..+..
T Consensus 590 ------~~~~~~~dLd~ls~~--TEGy~~~DL~ifVeRai~~a~l 626 (952)
T KOG0735|consen 590 ------LSDITMDDLDFLSVK--TEGYLATDLVIFVERAIHEAFL 626 (952)
T ss_pred ------hhhhhhHHHHHHHHh--cCCccchhHHHHHHHHHHHHHH
Confidence 123455566667763 6788899999999999988873
No 214
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=3.7e-08 Score=106.59 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=85.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccccccccchHHHHHHHHhh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~ 386 (684)
+.+||+||+|+|||++|+++|+.+.+. +..+....- ...++ -+.++++...
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~~~i~---id~iR~l~~~ 97 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--DKTIK---VDQVRELVSF 97 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--CCCCC---HHHHHHHHHH
Confidence 789999999999999999999998431 111111000 01122 1344444433
Q ss_pred cchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEec
Q 005667 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~t 466 (684)
.......+...|++|||+|+|... .+|+||+.||+ ...+++||++
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE---------------------Pp~~~~fiL~ 142 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE---------------------PSGDTVLLLI 142 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC---------------------CCCCeEEEEE
Confidence 221112345679999999999988 99999999993 1134666666
Q ss_pred CCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHH
Q 005667 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~ 546 (684)
++..+ .+.|.+++|.. .+.|.+++.+++.
T Consensus 143 t~~~~--------------------------------------------------~ll~TI~SRc~-~~~~~~~~~~~~~ 171 (328)
T PRK05707 143 SHQPS--------------------------------------------------RLLPTIKSRCQ-QQACPLPSNEESL 171 (328)
T ss_pred ECChh--------------------------------------------------hCcHHHHhhce-eeeCCCcCHHHHH
Confidence 54211 14467777776 5899999999988
Q ss_pred HHHhc
Q 005667 547 QVLTE 551 (684)
Q Consensus 547 ~Il~~ 551 (684)
+.+.+
T Consensus 172 ~~L~~ 176 (328)
T PRK05707 172 QWLQQ 176 (328)
T ss_pred HHHHH
Confidence 87764
No 215
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.5e-07 Score=104.00 Aligned_cols=71 Identities=15% Similarity=0.293 Sum_probs=56.7
Q ss_pred CCccccccc--ceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005667 523 LIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 523 f~PeLl~R~--d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe 600 (684)
+.|.|.+|| ..++.+.+++.+.+..|+.+... ...+.++++++.+|+++ ...++|+|..+++
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~-------------~~~~~i~~ev~~~la~~---~~~nvReLegaL~ 288 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE-------------DRGIEIPDEVLEFLAKR---LDRNVRELEGALN 288 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH-------------hcCCCCCHHHHHHHHHH---hhccHHHHHHHHH
Confidence 447888888 46899999999999999986221 12788999999999996 3566799999999
Q ss_pred HHHHHHHhc
Q 005667 601 NILMDAMYE 609 (684)
Q Consensus 601 ~~l~~al~e 609 (684)
++...+...
T Consensus 289 ~l~~~a~~~ 297 (408)
T COG0593 289 RLDAFALFT 297 (408)
T ss_pred HHHHHHHhc
Confidence 988776543
No 216
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.66 E-value=4.7e-07 Score=101.09 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=69.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccccc------------ccccccchH-HHHHHHHhhcchhhHhhc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ------------AGYVGEDVE-SILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~--pfv~v~~s~l~~------------~gyvG~~~~-~~l~~l~~~a~~~v~~a~ 395 (684)
.+++|+||||||||++|+.+|..+.. .+..+++..+.+ +..+|+... +.+.++...+... ...
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~~ 272 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PEK 272 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc--ccC
Confidence 79999999999999999999998843 222333322211 122333211 2222333332211 125
Q ss_pred CCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh-Cc---eeeecCCCCccCCCCCeEEeecCceEEEecCCccc
Q 005667 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GT---VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (684)
Q Consensus 396 ~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~---~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~d 471 (684)
+.|||||||++...+ .+...|+.+|| +. ...+|-.- ....+..+ .-..|+.+|+|.|..|
T Consensus 273 ~~vliIDEINRani~-------------kiFGel~~lLE~~~rg~~~~v~l~y--~e~d~e~f-~iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 273 KYVFIIDEINRANLS-------------KVFGEVMMLMEHDKRGENWSVPLTY--SENDEERF-YVPENVYIIGLMNTAD 336 (459)
T ss_pred CcEEEEehhhccCHH-------------Hhhhhhhhhccccccccccceeeec--cccccccc-cCCCCeEEEEecCccc
Confidence 689999999998765 16777888888 21 11111000 00011122 2347899999988654
No 217
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=4.1e-07 Score=98.27 Aligned_cols=129 Identities=20% Similarity=0.327 Sum_probs=84.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccccccccchHHHHHHHHhh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~ 386 (684)
+.+||.||+|+||+++|+++|+.+.+. +..+... +...++. +.++++.+.
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~I~i---d~iR~l~~~ 98 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNKDIGV---DQVREINEK 98 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCCCCCH---HHHHHHHHH
Confidence 788999999999999999999988431 1111110 0111222 334444332
Q ss_pred cchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEec
Q 005667 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~t 466 (684)
...........|++||++|+|... .+|+||+.||+ ...+++||++
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~ 143 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE---------------------PRPNTYFLLQ 143 (325)
T ss_pred HhhccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 211112345679999999999988 99999999993 2234667766
Q ss_pred CCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHH
Q 005667 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~ 546 (684)
++..+ .+.|.+++|.. .+.|.+++.+++.
T Consensus 144 t~~~~--------------------------------------------------~llpTI~SRC~-~~~~~~~~~~~~~ 172 (325)
T PRK06871 144 ADLSA--------------------------------------------------ALLPTIYSRCQ-TWLIHPPEEQQAL 172 (325)
T ss_pred ECChH--------------------------------------------------hCchHHHhhce-EEeCCCCCHHHHH
Confidence 54211 14456666755 6899999999988
Q ss_pred HHHhc
Q 005667 547 QVLTE 551 (684)
Q Consensus 547 ~Il~~ 551 (684)
+.+..
T Consensus 173 ~~L~~ 177 (325)
T PRK06871 173 DWLQA 177 (325)
T ss_pred HHHHH
Confidence 87765
No 218
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=4.4e-07 Score=97.84 Aligned_cols=91 Identities=25% Similarity=0.291 Sum_probs=54.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE--E--EEe-c--------cccc----cccccccc-----hHHHHHHHHhhcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPF--V--IAD-A--------TTLT----QAGYVGED-----VESILYKLLTVSD 388 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pf--v--~v~-~--------s~l~----~~gyvG~~-----~~~~l~~l~~~a~ 388 (684)
+.+||+||+|+||+++|.++|+.+.+.- - ... | .++. .+...|.. .-+.++++.+...
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 6799999999999999999998873210 0 000 0 0010 01111100 0233444443221
Q ss_pred hhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 389 ~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..-..+...|++||++|+|... .+|+||+.||+
T Consensus 107 ~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 139 (319)
T PRK08769 107 LTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEE 139 (319)
T ss_pred hCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhC
Confidence 1111234579999999999887 99999999993
No 219
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.63 E-value=6.6e-07 Score=94.13 Aligned_cols=62 Identities=26% Similarity=0.459 Sum_probs=47.1
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~-- 355 (684)
-.+||-.|.++.-..+. .+..+ .+..+.+|+.|+||||||.+|-.+|+.++
T Consensus 41 GmVGQ~~AR~Aagvi~k----mi~eg-----------------------kiaGraiLiaG~pgtGKtAiAmg~sksLG~~ 93 (454)
T KOG2680|consen 41 GMVGQVKARKAAGVILK----MIREG-----------------------KIAGRAILIAGQPGTGKTAIAMGMSKSLGDD 93 (454)
T ss_pred cchhhHHHHHHhHHHHH----HHHcC-----------------------cccceEEEEecCCCCCceeeeeehhhhhCCC
Confidence 47999999887766553 11111 12238999999999999999999999996
Q ss_pred CCEEEEecccc
Q 005667 356 VPFVIADATTL 366 (684)
Q Consensus 356 ~pfv~v~~s~l 366 (684)
.||..+..+++
T Consensus 94 tpF~~i~gSEI 104 (454)
T KOG2680|consen 94 TPFTSISGSEI 104 (454)
T ss_pred Cceeeeeccee
Confidence 58888888776
No 220
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=3e-07 Score=107.08 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=44.0
Q ss_pred Cccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceec-CHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005667 524 IPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF-TENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 524 ~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i-~eeAl~~La~~ay~~~~GAR~Lr~iIe 600 (684)
.|++++ |+. +|.|+|++..++.+.|.+.+..-.. .......+ ++++++.|+.. ..+.+|..-+.+|
T Consensus 257 ~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~-------~~~~~~~~p~~~~l~~I~~~---s~GDiRsAIn~LQ 325 (637)
T TIGR00602 257 NKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAK-------KNGEKIKVPKKTSVELLCQG---CSGDIRSAINSLQ 325 (637)
T ss_pred CHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhh-------ccccccccCCHHHHHHHHHh---CCChHHHHHHHHH
Confidence 367776 443 7999999999988887764322111 01112223 67889888874 4666777777777
Q ss_pred HHHH
Q 005667 601 NILM 604 (684)
Q Consensus 601 ~~l~ 604 (684)
-.+.
T Consensus 326 f~~~ 329 (637)
T TIGR00602 326 FSSS 329 (637)
T ss_pred HHHh
Confidence 5543
No 221
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.62 E-value=1.4e-07 Score=84.84 Aligned_cols=76 Identities=28% Similarity=0.429 Sum_probs=51.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC---EEEEeccccccccc------------cccchHHHHHHHHhhcchhhHhhc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGY------------VGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p---fv~v~~s~l~~~gy------------vG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
.+++|+||||||||++++.+|..+... ++.+++........ ............+..+.. ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK----LK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh----cC
Confidence 689999999999999999999999764 88888875432110 111112233333333221 22
Q ss_pred CCEEEEccccccchh
Q 005667 396 QGIVYIDEVDKITKK 410 (684)
Q Consensus 396 ~gVLfIDEIDkL~~~ 410 (684)
..+|+|||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 489999999999876
No 222
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.3e-07 Score=105.87 Aligned_cols=181 Identities=17% Similarity=0.318 Sum_probs=120.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
..+||+|+||||||++.+++|++++.+++.++|.++... -.+.. +..+...+.++.. ..++||||-..|-+.-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~~~-etkl~~~f~~a~~----~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SASHT-ETKLQAIFSRARR----CSPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccchh-HHHHHHHHHHHhh----cCceEEEEeccceeeec
Confidence 689999999999999999999999999999999998732 23333 6677777777653 58899999999999855
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcc
Q 005667 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~ 490 (684)
.+. +.|. +++..+-..|... ....+...++||++.+..+
T Consensus 506 ~dg---ged~---rl~~~i~~~ls~e----------------~~~~~~~~~ivv~t~~s~~------------------- 544 (953)
T KOG0736|consen 506 QDG---GEDA---RLLKVIRHLLSNE----------------DFKFSCPPVIVVATTSSIE------------------- 544 (953)
T ss_pred CCC---chhH---HHHHHHHHHHhcc----------------cccCCCCceEEEEeccccc-------------------
Confidence 322 2222 2444444444310 0122344577887765321
Q ss_pred cccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcc
Q 005667 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~ 570 (684)
++++.+.+-+-..+.++.+++++..+|++-+.+.+
T Consensus 545 -------------------------------~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~-------------- 579 (953)
T KOG0736|consen 545 -------------------------------DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHL-------------- 579 (953)
T ss_pred -------------------------------cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcc--------------
Confidence 25566666677789999999999999998754433
Q ss_pred eecC-HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005667 571 LHFT-ENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 571 l~i~-eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~a 606 (684)
.+. +.-++.++. +..++-.++|..++.++-+++
T Consensus 580 -~~n~~v~~k~~a~--~t~gfs~~~L~~l~~~~s~~~ 613 (953)
T KOG0736|consen 580 -PLNQDVNLKQLAR--KTSGFSFGDLEALVAHSSLAA 613 (953)
T ss_pred -ccchHHHHHHHHH--hcCCCCHHHHHHHhcCchHHH
Confidence 122 233444455 355666667776666653333
No 223
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=5.9e-07 Score=97.52 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=55.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccccccccchHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLT 385 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~p------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~ 385 (684)
++.+||+||+|+||+++|.++|+.+-+. +..+....- ...++- +.++++.+
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~i---dqiR~l~~ 98 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--KSSLGV---DAVREVTE 98 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--cccCCH---HHHHHHHH
Confidence 3789999999999999999999998331 111111000 011222 23333333
Q ss_pred hcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 386 VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 386 ~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
........+...|++||++|+|... ..|+||+.||+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 134 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE 134 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC
Confidence 2211112345679999999999988 99999999993
No 224
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=6.4e-07 Score=97.48 Aligned_cols=27 Identities=33% Similarity=0.408 Sum_probs=24.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
++.+||+||+|+||+++|+.+|+.+.+
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 379999999999999999999998844
No 225
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.3e-06 Score=96.76 Aligned_cols=206 Identities=18% Similarity=0.253 Sum_probs=126.2
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.++|.+.-+..+.+++..|.-. +. .+.+.+.|-||||||.+...+-..+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------------~t------------~gSlYVsG~PGtgkt~~l~rvl~~~~~~ 202 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------------NT------------SGSLYVSGQPGTGKTALLSRVLDSLSKS 202 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------------cc------------CcceEeeCCCCcchHHHHHHHHHhhhhh
Confidence 4789999999998888755431 11 2788999999999999988663333
Q ss_pred -CC-CEEEEecccccccc-------------ccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCC
Q 005667 355 -NV-PFVIADATTLTQAG-------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 355 -~~-pfv~v~~s~l~~~g-------------yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d 419 (684)
.. ..++++|.++..+. ..+...+......|... .......-|+++||+|.|...
T Consensus 203 ~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h--~~q~k~~~llVlDEmD~L~tr--------- 271 (529)
T KOG2227|consen 203 SKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH--TKQSKFMLLLVLDEMDHLITR--------- 271 (529)
T ss_pred cccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH--HhcccceEEEEechhhHHhhc---------
Confidence 22 35899999876421 11111111111222211 011123458999999999865
Q ss_pred CchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCC
Q 005667 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~ 499 (684)
-+..|+.+++-. ....+.+++|.-+|..||.+.
T Consensus 272 -----~~~vLy~lFewp------------------~lp~sr~iLiGiANslDlTdR------------------------ 304 (529)
T KOG2227|consen 272 -----SQTVLYTLFEWP------------------KLPNSRIILIGIANSLDLTDR------------------------ 304 (529)
T ss_pred -----ccceeeeehhcc------------------cCCcceeeeeeehhhhhHHHH------------------------
Confidence 345566666611 123344555555554443222
Q ss_pred CchhhhHhHHhhhccchHHHHcCCCccccccc---ceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHH
Q 005667 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRF---PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 500 ~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~---d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ee 576 (684)
|-|-|..|. +.++.|+||+.+++.+|++..+... . ...+-+.
T Consensus 305 -----------------------~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~-----------~-t~~~~~~ 349 (529)
T KOG2227|consen 305 -----------------------FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE-----------S-TSIFLNA 349 (529)
T ss_pred -----------------------HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc-----------c-ccccchH
Confidence 112222222 4589999999999999999754332 1 3345557
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 577 ALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 577 Al~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
|++.+|.+.....+..|.+-.++++.+.
T Consensus 350 Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 350 AIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 9999999866666668888777776654
No 226
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.45 E-value=1.4e-07 Score=106.58 Aligned_cols=155 Identities=15% Similarity=0.259 Sum_probs=86.2
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraI 350 (684)
+-..+...|+|.+.+|+++.-++.....+. ..+ ..--.-..||||+|.|||||+.+.|.+
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~kn--------~~~------------khkvRGDinvLL~GDPGTaKSQFLKY~ 502 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPKN--------PGG------------KHKVRGDINVLLLGDPGTAKSQFLKYA 502 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCccC--------CCC------------CceeccceeEEEecCCCccHHHHHHHH
Confidence 444555569999999999988875211110 000 000011279999999999999999999
Q ss_pred HHHhCCCEEEEe-ccccccccccccchHH-HHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHH
Q 005667 351 ARYVNVPFVIAD-ATTLTQAGYVGEDVES-ILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 351 A~~l~~pfv~v~-~s~l~~~gyvG~~~~~-~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~ 428 (684)
++.....++..- ++.- .|+..+-... ..+++--.+ +.+..+.+||.+|||+|++... -...
T Consensus 503 eK~s~RAV~tTGqGASa--vGLTa~v~KdPvtrEWTLEa-GALVLADkGvClIDEFDKMndq--------------DRtS 565 (854)
T KOG0477|consen 503 EKTSPRAVFTTGQGASA--VGLTAYVRKDPVTREWTLEA-GALVLADKGVCLIDEFDKMNDQ--------------DRTS 565 (854)
T ss_pred HhcCcceeEeccCCccc--cceeEEEeeCCccceeeecc-CeEEEccCceEEeehhhhhccc--------------ccch
Confidence 888754333221 1110 1111110000 001111011 2233467899999999999765 2345
Q ss_pred HHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcc
Q 005667 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~ 470 (684)
+-++||..-+.|..-|-.+..+.+ +.+|+|+|+.
T Consensus 566 IHEAMEQQSISISKAGIVtsLqAr--------ctvIAAanPi 599 (854)
T KOG0477|consen 566 IHEAMEQQSISISKAGIVTSLQAR--------CTVIAAANPI 599 (854)
T ss_pred HHHHHHhcchhhhhhhHHHHHHhh--------hhhheecCCC
Confidence 778888766666444433333333 5566676653
No 227
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=2.5e-06 Score=92.09 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=55.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC-----------------------EEEEeccccccccccccchHHHHHHHHhhc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP-----------------------FVIADATTLTQAGYVGEDVESILYKLLTVS 387 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p-----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a 387 (684)
+.+||.||.|+||+.+|+++|+.+.+. |..+.... ....++. +.++++....
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I~v---dqiR~l~~~~ 100 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EGKSITV---EQIRQCNRLA 100 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CCCcCCH---HHHHHHHHHH
Confidence 789999999999999999999988321 21121100 0011221 2334433222
Q ss_pred chhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 388 ~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
......+...|++||++|+|... ..|+||+.||+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 134 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE 134 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC
Confidence 11111234579999999999987 99999999993
No 228
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.44 E-value=2.3e-06 Score=89.41 Aligned_cols=163 Identities=23% Similarity=0.368 Sum_probs=103.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEecccc---------------------ccccccccchHHHHHHHHhh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIADATTL---------------------TQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~---pfv~v~~s~l---------------------~~~gyvG~~~~~~l~~l~~~ 386 (684)
.|++++||+|+||-+.+.++-+.+.. +-+.++..++ . +.-.|......+++++..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEit-PSDaG~~DRvViQellKe 113 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEIT-PSDAGNYDRVVIQELLKE 113 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeC-hhhcCcccHHHHHHHHHH
Confidence 69999999999999999988777732 2111111111 1 223344335556666543
Q ss_pred cch--hhH---hhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCce
Q 005667 387 SDY--NVA---AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDI 461 (684)
Q Consensus 387 a~~--~v~---~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~Idtsni 461 (684)
-.. .++ +..-.|++|.|+|+|..+ +|.+|.+-||... ..-.+
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkYs-------------------~~~Rl 160 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKYS-------------------SNCRL 160 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHHh-------------------cCceE
Confidence 211 011 123368999999999988 9999999999211 11123
Q ss_pred EEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCC
Q 005667 462 LFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT 541 (684)
Q Consensus 462 IfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs 541 (684)
|++|.+.. .+++++.+|-= .|..+.++
T Consensus 161 Il~cns~S----------------------------------------------------riIepIrSRCl-~iRvpaps 187 (351)
T KOG2035|consen 161 ILVCNSTS----------------------------------------------------RIIEPIRSRCL-FIRVPAPS 187 (351)
T ss_pred EEEecCcc----------------------------------------------------cchhHHhhhee-EEeCCCCC
Confidence 34433221 14466666743 68999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHH
Q 005667 542 ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLL 599 (684)
Q Consensus 542 ~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iI 599 (684)
++|+..++...+.+ . .+.+.++.+..+++++ -|.||+++
T Consensus 188 ~eeI~~vl~~v~~k-----------E--~l~lp~~~l~rIa~kS------~~nLRrAl 226 (351)
T KOG2035|consen 188 DEEITSVLSKVLKK-----------E--GLQLPKELLKRIAEKS------NRNLRRAL 226 (351)
T ss_pred HHHHHHHHHHHHHH-----------h--cccCcHHHHHHHHHHh------cccHHHHH
Confidence 99999998863221 1 6677899999999963 25677765
No 229
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.41 E-value=2.4e-06 Score=80.25 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=53.3
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT 344 (684)
..+...|+..|++.++||+-|++.|..+|..|+.. ..+.+| -.+.|.|+||||||
T Consensus 13 ~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-------------~~p~Kp------------LVlSfHG~tGtGKn 67 (127)
T PF06309_consen 13 KYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-------------PNPRKP------------LVLSFHGWTGTGKN 67 (127)
T ss_pred CCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-------------CCCCCC------------EEEEeecCCCCcHH
Confidence 35567799999999999999999999999866542 122333 56779999999999
Q ss_pred HHHHHHHHHh
Q 005667 345 LLAKTLARYV 354 (684)
Q Consensus 345 ~LAraIA~~l 354 (684)
.+++.||+.+
T Consensus 68 ~v~~liA~~l 77 (127)
T PF06309_consen 68 FVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHH
Confidence 9999999996
No 230
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-05 Score=90.41 Aligned_cols=93 Identities=28% Similarity=0.385 Sum_probs=63.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchH---HHHHHHHhhcchhhHhhcCCEEEEccccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVE---SILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~---~~l~~l~~~a~~~v~~a~~gVLfIDEIDk 406 (684)
-..+||.||||+|||.||-.+|...+.||+.+-..+- .+|.++. ..+...|+.+- +..-+||++|+|++
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~----miG~sEsaKc~~i~k~F~DAY----kS~lsiivvDdiEr 609 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED----MIGLSESAKCAHIKKIFEDAY----KSPLSIIVVDDIER 609 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH----ccCccHHHHHHHHHHHHHHhh----cCcceEEEEcchhh
Confidence 3799999999999999999999999999998765432 2343322 33445555431 24558999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHh
Q 005667 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 L~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|..--. ++ .....-++++|+-++.
T Consensus 610 LiD~vp---IG-PRfSN~vlQaL~VllK 633 (744)
T KOG0741|consen 610 LLDYVP---IG-PRFSNLVLQALLVLLK 633 (744)
T ss_pred hhcccc---cC-chhhHHHHHHHHHHhc
Confidence 875311 11 1122337777877776
No 231
>PRK12377 putative replication protein; Provisional
Probab=98.40 E-value=1.2e-06 Score=91.44 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=53.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---ccc-ccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYV-GEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~---gyv-G~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.+++|+||||||||+||.+|++.+ +..++.++..++... .+. +......+..+ ....+|+|||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l----------~~~dLLiIDD 171 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL----------CKVDLLVLDE 171 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh----------cCCCEEEEcC
Confidence 689999999999999999999888 455666666655421 110 00111111111 2346999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
++..... +..+..|..+++.
T Consensus 172 lg~~~~s------------~~~~~~l~~ii~~ 191 (248)
T PRK12377 172 IGIQRET------------KNEQVVLNQIIDR 191 (248)
T ss_pred CCCCCCC------------HHHHHHHHHHHHH
Confidence 9765332 1167888899983
No 232
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.39 E-value=1.4e-05 Score=82.23 Aligned_cols=173 Identities=20% Similarity=0.347 Sum_probs=108.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---~ 355 (684)
++|-+..++.|.+--. +...+ .|..||||+|.-||||+.|.||+-.++ +
T Consensus 62 l~Gvd~qk~~L~~NT~----~F~~G------------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g 113 (287)
T COG2607 62 LVGVDRQKEALVRNTE----QFAEG------------------------LPANNVLLWGARGTGKSSLVKALLNEYADEG 113 (287)
T ss_pred HhCchHHHHHHHHHHH----HHHcC------------------------CcccceEEecCCCCChHHHHHHHHHHHHhcC
Confidence 6999999998876553 21111 234899999999999999999997766 4
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..++.++-.++.. ...++.. ++..+ ++=|||+|+.-= + .++.....|-.+|||
T Consensus 114 lrLVEV~k~dl~~-------Lp~l~~~-Lr~~~------~kFIlFcDDLSF---e----------~gd~~yK~LKs~LeG 166 (287)
T COG2607 114 LRLVEVDKEDLAT-------LPDLVEL-LRARP------EKFILFCDDLSF---E----------EGDDAYKALKSALEG 166 (287)
T ss_pred CeEEEEcHHHHhh-------HHHHHHH-HhcCC------ceEEEEecCCCC---C----------CCchHHHHHHHHhcC
Confidence 5688888877752 1233332 33222 345899997422 1 122367778889996
Q ss_pred ceeeecCCCCccCCCCCeEEeecCceEEEecCCcccH-HHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhcc
Q 005667 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dL-e~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (684)
.+.- ...|++|..|+|-.-| -+.+. .+.++. .++.
T Consensus 167 ~ve~-----------------rP~NVl~YATSNRRHLl~e~~~-----dn~~~~----------------------~eih 202 (287)
T COG2607 167 GVEG-----------------RPANVLFYATSNRRHLLPEDMK-----DNEGST----------------------GEIH 202 (287)
T ss_pred Cccc-----------------CCCeEEEEEecCCcccccHhhh-----hCCCcc----------------------cccC
Confidence 5421 3457888888884321 11111 111111 1222
Q ss_pred chHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhch
Q 005667 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 515 ~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~ 552 (684)
+.+.++.. -.|-.||...+.|.+.+.++..+|+...
T Consensus 203 ~~eaveEK--lSlSDRFGLwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 203 PSEAVEEK--LSLSDRFGLWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred hhHHHHHh--hchhhhcceeecccCCCHHHHHHHHHHH
Confidence 22222222 2366799999999999999999999864
No 233
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.39 E-value=1.4e-06 Score=96.80 Aligned_cols=256 Identities=18% Similarity=0.298 Sum_probs=135.8
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCccccc-ccceEEEEccCCCcHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVEL-EKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~vLL~GPpGTGKT~LAra 349 (684)
+...+...|+|.+++|+++.-++. -+.+++.+-| +.+ -.-||||.|.|||.|+.|.+-
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLF-------gGsrK~LpDg--------------~~lRGDINVLLLGDPgtAKSQlLKF 383 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLF-------GGSRKRLPDG--------------VTLRGDINVLLLGDPGTAKSQLLKF 383 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhh-------cCccccCCCc--------------ceeccceeEEEecCCchhHHHHHHH
Confidence 334444568999999999987774 2222222111 111 126999999999999999988
Q ss_pred HHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHH
Q 005667 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 350 IA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+-+..-.- ++.+...-..+|+...-..+-...-|....+....+.+||+.|||+|++..+ -.-++
T Consensus 384 vEkvsPIa-VYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~--------------DRVAI 448 (729)
T KOG0481|consen 384 VEKVSPIA-VYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED--------------DRVAI 448 (729)
T ss_pred HHhcCceE-EEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch--------------hhhHH
Confidence 76554221 2222211111111111000000111111122233467899999999999766 34467
Q ss_pred HHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHH
Q 005667 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~l 509 (684)
-++||...+.|..-|-++..+ +.+-+++++|.. .|=..+.. ++
T Consensus 449 HEAMEQQTISIAKAGITT~LN--------SRtSVLAAANpv--------------fGRyDd~K----t~----------- 491 (729)
T KOG0481|consen 449 HEAMEQQTISIAKAGITTTLN--------SRTSVLAAANPV--------------FGRYDDTK----TG----------- 491 (729)
T ss_pred HHHHHhhhHHHhhhcceeeec--------chhhhhhhcCCc--------------cccccccC----Cc-----------
Confidence 888997777775555443322 223334444421 01000000 00
Q ss_pred hhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHH-HHhchHH----------------------HHHHHHHHHHhh
Q 005667 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ-VLTEPKN----------------------ALGKQYRKMFQM 566 (684)
Q Consensus 510 l~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~-Il~~~l~----------------------~L~kqy~~~l~~ 566 (684)
-+.+ .|.|.+++|||.|+.+.+--.++.-. |.++.++ ...++|.... .
T Consensus 492 ~dNI--------Df~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~Yc-R 562 (729)
T KOG0481|consen 492 EDNI--------DFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYC-R 562 (729)
T ss_pred cccc--------chhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHH-H
Confidence 0111 27899999999988877665543322 2222111 1123344322 2
Q ss_pred CCcceecCHHHHHHHHHhcC-----------------CCCCChHHHHHHHHHHHHHHHhcC
Q 005667 567 NGVKLHFTENALRLIAKKAI-----------------SKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 567 ~gi~l~i~eeAl~~La~~ay-----------------~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
.+..-.++++|-+.|..+-. .-+..+|+|+.+|. +.+.+.++
T Consensus 563 ~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiR--I~ESLAKm 621 (729)
T KOG0481|consen 563 LKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIR--IAESLAKM 621 (729)
T ss_pred hccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHH--HHHHHHhh
Confidence 34456689999888887622 13456889998886 44444443
No 234
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=2.3e-06 Score=79.76 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=46.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~--~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~ 408 (684)
..++|+||.|||||++++.+++.+. ..++.+++.+.......- .. +.+.+.... .....+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~---~~-~~~~~~~~~----~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD---PD-LLEYFLELI----KPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh---hh-hHHHHHHhh----ccCCcEEEEehhhhhc
Confidence 5789999999999999999998875 677888887654211100 00 112221110 0146799999999985
No 235
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=2e-06 Score=93.14 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=57.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-------------------------CEEEEecccc-cccc----ccccchHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV-------------------------PFVIADATTL-TQAG----YVGEDVESIL 380 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~-------------------------pfv~v~~s~l-~~~g----yvG~~~~~~l 380 (684)
+.+||+||+|+|||++|+.+|+.+.+ .|+.++...- .+.| -++ -+.+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~---id~i 98 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK---IDAV 98 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC---HHHH
Confidence 78999999999999999999998742 1333332110 0001 011 2344
Q ss_pred HHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 381 YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 381 ~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+++..........+...|++||+++.+... .++.|++.||
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LE 138 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLE 138 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHH
Confidence 444443322222355679999999999888 9999999998
No 236
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.33 E-value=4.3e-06 Score=83.40 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=26.5
Q ss_pred CcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHh
Q 005667 524 IPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 524 ~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ 584 (684)
.+++.+|... +.+.+++.++..+++..... .. ..+.++++.++.+...
T Consensus 176 ~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~-----------~~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 176 KSPLFGRFSH-IELKPLSKEEAREFLKELFK-----------EL-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp TSTTTT---E-EEE----HHHHHHHHHHHHH-----------CC-------HHHHHHHHHH
T ss_pred cCccccccce-EEEeeCCHHHHHHHHHHHHH-----------Hh-hcccCCHHHHHHHHHH
Confidence 3678899987 99999999999998886321 11 1234588888888875
No 237
>PRK08116 hypothetical protein; Validated
Probab=98.33 E-value=1.3e-06 Score=92.12 Aligned_cols=85 Identities=19% Similarity=0.384 Sum_probs=53.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~---~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.+++|+|++|||||+||.+|++.+ +.+++.++..++.. ..|.+.. ......++.. .....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~------l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRS------LVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHH------hcCCCEEEEecc
Confidence 479999999999999999999987 56788888776542 1111100 0000111111 112359999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 405 DkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+..... +-.+..|..+++
T Consensus 188 g~e~~t------------~~~~~~l~~iin 205 (268)
T PRK08116 188 GAERDT------------EWAREKVYNIID 205 (268)
T ss_pred cCCCCC------------HHHHHHHHHHHH
Confidence 653221 127788888888
No 238
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.30 E-value=2.2e-06 Score=104.22 Aligned_cols=155 Identities=22% Similarity=0.290 Sum_probs=104.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-ccccccch----HHHHHHHHhhcchhhHhhcCCEEEEcccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDV----ESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~-~gyvG~~~----~~~l~~l~~~a~~~v~~a~~gVLfIDEID 405 (684)
+++||.|.||+|||.|..++|+..|..+++++.++-++ ...+|.+. ++.+ ....++...+...++-++|||+.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~WVlLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGWVLLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCEEEeehhh
Confidence 68999999999999999999999999999999886543 11222221 1111 12234444444567899999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCC
Q 005667 406 KITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 406 kL~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
....+ |+..|...+| .....||+-...++-. .|..+.+|-|+.+ ++.
T Consensus 1622 LaSQS--------------VlEGLNacLDhR~eayIPEld~~f~~H--------pnfrVFAaqNPq~------qgg---- 1669 (4600)
T COG5271 1622 LASQS--------------VLEGLNACLDHRREAYIPELDKTFDVH--------PNFRVFAAQNPQD------QGG---- 1669 (4600)
T ss_pred hhHHH--------------HHHHHHHHHhhccccccccccceeecc--------CCeeeeeecCchh------cCC----
Confidence 98877 9999999998 5555666543322221 2333333333211 110
Q ss_pred CCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHH
Q 005667 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN 554 (684)
Q Consensus 485 IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~ 554 (684)
-+++++..|++||. +|....|+.+|+..|+.....
T Consensus 1670 ----------------------------------GRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1670 ----------------------------------GRKGLPKSFLNRFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ----------------------------------CcccCCHHHhhhhh-eEEecccccchHHHHHHhhCC
Confidence 12468889999998 788999999999999886533
No 239
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.24 E-value=1.7e-06 Score=92.03 Aligned_cols=85 Identities=28% Similarity=0.385 Sum_probs=54.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE------EEEeccccccccccccchHHHHHHHHhhcc--hhhH-hhcCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPF------VIADATTLTQAGYVGEDVESILYKLLTVSD--YNVA-AAQQGIVYI 401 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pf------v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~--~~v~-~a~~gVLfI 401 (684)
.|.|++||||||||....+.|+.+..|. ...++++ -.|-++-..-...|.... ..+. .+....++|
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd-----~rgid~vr~qi~~fast~~~~~fst~~~fKlvIL 137 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD-----DRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVIL 137 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC-----ccCCcchHHHHHHHHhhccceeccccCceeEEEe
Confidence 3999999999999999999999986641 1222222 122222121112222211 1111 135578999
Q ss_pred ccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 402 DEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
||+|.+... +|++|.+.+|
T Consensus 138 DEADaMT~~--------------AQnALRRvie 156 (360)
T KOG0990|consen 138 DEADAMTRD--------------AQNALRRVIE 156 (360)
T ss_pred cchhHhhHH--------------HHHHHHHHHH
Confidence 999999988 9999999888
No 240
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.19 E-value=5.4e-05 Score=80.78 Aligned_cols=114 Identities=19% Similarity=0.171 Sum_probs=64.7
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraI 350 (684)
+..-....-||...|++.|...-. +....++ ....++||+|+++.|||++++.+
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~-----Ll~~P~~---------------------~Rmp~lLivG~snnGKT~Ii~rF 81 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEE-----LLEYPKR---------------------HRMPNLLIVGDSNNGKTMIIERF 81 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHH-----HHhCCcc---------------------cCCCceEEecCCCCcHHHHHHHH
Confidence 444455667999999988776542 2211111 11268999999999999999999
Q ss_pred HHHh---------CCCEEEEecccccc----------ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 351 ARYV---------NVPFVIADATTLTQ----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 351 A~~l---------~~pfv~v~~s~l~~----------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
.+.. ..|++.+.+..-.. .-+..+........+....-..+....-.+|+|||+|.+...
T Consensus 82 ~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG 160 (302)
T PF05621_consen 82 RRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG 160 (302)
T ss_pred HHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc
Confidence 8655 23677777643211 000000000011111111112233445679999999997654
No 241
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=1.8e-05 Score=84.34 Aligned_cols=88 Identities=23% Similarity=0.155 Sum_probs=55.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec--------cc---ccccc---ccccchHHHHHHHHhhcchhhHhhcC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA--------TT---LTQAG---YVGEDVESILYKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~--------s~---l~~~g---yvG~~~~~~l~~l~~~a~~~v~~a~~ 396 (684)
+.+||+||+|+||+.+|.++|+.+.+.-..-.| .+ +.+.+ .++- +.++++..........+..
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~i---dqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSI---ETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcH---HHHHHHHHHHhhCccCCCc
Confidence 789999999999999999999988432000011 01 11111 1222 2334433322111112456
Q ss_pred CEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 397 gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.|++||++|+|..+ .+++||+.||+
T Consensus 97 kv~ii~~ad~mt~~--------------AaNaLLK~LEE 121 (290)
T PRK05917 97 KIYIIHEADRMTLD--------------AISAFLKVLED 121 (290)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHhhc
Confidence 79999999999988 99999999993
No 242
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.18 E-value=3.1e-06 Score=73.04 Aligned_cols=68 Identities=22% Similarity=0.410 Sum_probs=57.9
Q ss_pred CCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005667 540 LTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 540 Ls~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
|+.+++.+|+...++.+.++ +..+++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+++..
T Consensus 1 L~~~~l~~I~~~~l~~l~~~----l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~i 68 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNER----LKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAI 68 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHH----HHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH----HHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999977766555 455899999999999999999999999999999999999999988754
No 243
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=2e-06 Score=79.11 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=28.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--------CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV--------NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l--------~~pfv~v~~s~l 366 (684)
+.++++||||+|||++++.+++.+ ..+++.+++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 688999999999999999998887 567777777644
No 244
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.15 E-value=1.6e-05 Score=97.22 Aligned_cols=146 Identities=27% Similarity=0.383 Sum_probs=103.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-cccccc----ch------HHHHHHHHhhcchhhHhhcCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGE----DV------ESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~-~gyvG~----~~------~~~l~~l~~~a~~~v~~a~~gVL 399 (684)
-++|+.||+-+|||.+...+|+..+..|++++-.+-++ ..|+|. +. ++.+-++++ .+--|
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR---------~GyWI 959 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR---------RGYWI 959 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh---------cCcEE
Confidence 68999999999999999999999999999999876543 223332 11 122222222 23479
Q ss_pred EEccccccchhccccccCCCCchHHHHHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHh
Q 005667 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 400 fIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~ 478 (684)
+|||....+.+ |+.+|.+++| .+.+-||+......+..+++...+.|...
T Consensus 960 VLDELNLApTD--------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg--------------- 1010 (4600)
T COG5271 960 VLDELNLAPTD--------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPG--------------- 1010 (4600)
T ss_pred EeeccccCcHH--------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCc---------------
Confidence 99999998877 9999999998 77778887776666555544444433321
Q ss_pred ccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhch
Q 005667 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 479 r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~ 552 (684)
||+. ++++...|++||- -+.|.+..++|+..|+...
T Consensus 1011 -------~YgG------------------------------RK~LSrAFRNRFl-E~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1011 -------GYGG------------------------------RKGLSRAFRNRFL-EMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred -------cccc------------------------------hHHHHHHHHhhhH-hhhcccCcHHHHHHHHhcc
Confidence 2221 1245677888885 3789999999999998764
No 245
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.10 E-value=1.3e-05 Score=84.74 Aligned_cols=200 Identities=17% Similarity=0.277 Sum_probs=99.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC-CC--EEEEeccccccccccccchHHHHHHHHhhc----c---hhhHhhcCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN-VP--FVIADATTLTQAGYVGEDVESILYKLLTVS----D---YNVAAAQQGIVY 400 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~-~p--fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a----~---~~v~~a~~gVLf 400 (684)
.++||+||+|||||.+++.+-+.+. .. ...++++..+. ...++..++.. . +.....+..|+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 7999999999999999988765553 23 23445543321 23333333221 1 111234567999
Q ss_pred EccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcc
Q 005667 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 401 IDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~ 480 (684)
||++..-.++.. ........|.++|| .|+..+.... --....++.||++.+...
T Consensus 106 iDDlN~p~~d~y--------gtq~~iElLRQ~i~--------~~g~yd~~~~-~~~~i~~i~~vaa~~p~~--------- 159 (272)
T PF12775_consen 106 IDDLNMPQPDKY--------GTQPPIELLRQLID--------YGGFYDRKKL-EWKSIEDIQFVAAMNPTG--------- 159 (272)
T ss_dssp EETTT-S---TT--------S--HHHHHHHHHHH--------CSEEECTTTT-EEEEECSEEEEEEESSTT---------
T ss_pred ecccCCCCCCCC--------CCcCHHHHHHHHHH--------hcCcccCCCc-EEEEEeeeEEEEecCCCC---------
Confidence 999998665521 12225555566677 2333333221 235667788888765321
Q ss_pred ccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHH
Q 005667 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 481 ~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy 560 (684)
| + .. +.|-|+..+. ++.+..++.+.+..|....+....+..
T Consensus 160 -----G-----r----------~~------------------is~R~~r~f~-i~~~~~p~~~sl~~If~~il~~~l~~~ 200 (272)
T PF12775_consen 160 -----G-----R----------NP------------------ISPRFLRHFN-ILNIPYPSDESLNTIFSSILQSHLKNG 200 (272)
T ss_dssp -----T-----------------S------------------HHHHHHTTEE-EEE----TCCHHHHHHHHHHHHHTCHT
T ss_pred -----C-----C----------CC------------------CChHHhhheE-EEEecCCChHHHHHHHHHHHhhhcccC
Confidence 0 0 00 2234444444 789999999999999887544332210
Q ss_pred HHHHhh--CCcceec---CHHHHHHHHHhcC------CCCCChHHHHHHHHHHHHH
Q 005667 561 RKMFQM--NGVKLHF---TENALRLIAKKAI------SKNTGARGLRSLLENILMD 605 (684)
Q Consensus 561 ~~~l~~--~gi~l~i---~eeAl~~La~~ay------~~~~GAR~Lr~iIe~~l~~ 605 (684)
. +.. .+..-.+ +=+..+.+.+.-. .=-++.|.|-++++.++..
T Consensus 201 ~--f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~~ 254 (272)
T PF12775_consen 201 G--FPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILLA 254 (272)
T ss_dssp T--SSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHHH
T ss_pred C--CChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHhc
Confidence 0 000 0000011 1122223333211 1235789999999998754
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.07 E-value=1e-05 Score=84.64 Aligned_cols=70 Identities=27% Similarity=0.430 Sum_probs=47.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---cccc-ccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYV-GEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~---~gyv-G~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.+++|+||||||||+||-||+..+ +.....+..+++.. ..+- |.. +..+...+.. --+|+|||
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~-~~~l~~~l~~---------~dlLIiDD 175 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRL-EEKLLRELKK---------VDLLIIDD 175 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCch-HHHHHHHhhc---------CCEEEEec
Confidence 799999999999999999999887 56677777776642 1111 111 2222232222 24999999
Q ss_pred ccccchh
Q 005667 404 VDKITKK 410 (684)
Q Consensus 404 IDkL~~~ 410 (684)
+......
T Consensus 176 lG~~~~~ 182 (254)
T COG1484 176 IGYEPFS 182 (254)
T ss_pred ccCccCC
Confidence 9997654
No 247
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.07 E-value=7.3e-05 Score=85.72 Aligned_cols=94 Identities=19% Similarity=0.393 Sum_probs=55.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec-ccccc-----cccccc--------chHHHHHHH-Hhhcchh-h---
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA-TTLTQ-----AGYVGE--------DVESILYKL-LTVSDYN-V--- 391 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~-s~l~~-----~gyvG~--------~~~~~l~~l-~~~a~~~-v--- 391 (684)
+-+||+||||||||++++.+|++++..+..... ..+.. ..|.+. .....+.++ +..+.+. +
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 578899999999999999999999887766532 22111 111111 001222222 2222221 1
Q ss_pred ---HhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 392 ---AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 392 ---~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
......||+|||+-.+... +. +...+.|.+.+.
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~--------~~--~~f~~~L~~~l~ 161 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR--------DT--SRFREALRQYLR 161 (519)
T ss_pred CCCcCCCceEEEeeccccccch--------hH--HHHHHHHHHHHH
Confidence 1235679999998865543 11 347777777776
No 248
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=7.2e-05 Score=80.21 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=55.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-----------C--EEEEeccccccccccccchHHHHHHHHhhcchhh-HhhcC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV-----------P--FVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQ 396 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~-----------p--fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v-~~a~~ 396 (684)
+.+||+|+.|+||+.+|+.+++.+.+ | +..++.. .+-++ -..++.+.+..+... +....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~~i~---vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DKDLS---KSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CCcCC---HHHHHHHHHHhccCCcccCCc
Confidence 67889999999999999999988722 1 1222200 00011 134445544433221 22467
Q ss_pred CEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 397 gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.|++||++|++... .+++||+.||
T Consensus 92 KvvII~~~e~m~~~--------------a~NaLLK~LE 115 (299)
T PRK07132 92 KILIIKNIEKTSNS--------------LLNALLKTIE 115 (299)
T ss_pred eEEEEecccccCHH--------------HHHHHHHHhh
Confidence 89999999999877 8999999999
No 249
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=5.8e-05 Score=80.57 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=52.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE-------E-Eecccccc---cc--cc---ccch-HHHHHHHHhhcchhhHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV-------I-ADATTLTQ---AG--YV---GEDV-ESILYKLLTVSDYNVAA 393 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv-------~-v~~s~l~~---~g--yv---G~~~-~~~l~~l~~~a~~~v~~ 393 (684)
+.+||+|| +||+++|+.+|+.+.+.-. . -+|..+.. +. ++ |..+ -..++++..........
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~ 102 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYE 102 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCccc
Confidence 78899996 6899999999988732100 0 00110100 00 01 1110 13444443332211123
Q ss_pred hcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 394 a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
+...|++||++|+|... ..|+||+.+|+
T Consensus 103 ~~~kV~II~~ad~m~~~--------------AaNaLLKtLEE 130 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN--------------AANSLLKVIEE 130 (290)
T ss_pred CCcEEEEeehhhhcCHH--------------HHHHHHHHhcC
Confidence 45679999999999987 99999999993
No 250
>PRK08181 transposase; Validated
Probab=98.03 E-value=8.8e-06 Score=85.94 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=53.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDk 406 (684)
..+++|+||||||||+||.+++..+ +..++.+++.++...-..... .......+.. -...-+|+|||++.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~-~~~~~~~l~~------l~~~dLLIIDDlg~ 178 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR-ELQLESAIAK------LDKFDLLILDDLAY 178 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHh-CCcHHHHHHH------HhcCCEEEEecccc
Confidence 3689999999999999999998766 556666776665421000000 0001111111 12346999999998
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHh
Q 005667 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 L~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+..+ +..+..|+++++
T Consensus 179 ~~~~------------~~~~~~Lf~lin 194 (269)
T PRK08181 179 VTKD------------QAETSVLFELIS 194 (269)
T ss_pred ccCC------------HHHHHHHHHHHH
Confidence 7654 115677888887
No 251
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.03 E-value=4.5e-05 Score=88.10 Aligned_cols=180 Identities=21% Similarity=0.305 Sum_probs=114.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----------CCEEEEeccccccc---------cccccchH-----HHHHHHHhh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN----------VPFVIADATTLTQA---------GYVGEDVE-----SILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~----------~pfv~v~~s~l~~~---------gyvG~~~~-----~~l~~l~~~ 386 (684)
+-+.+.|-||||||.+++.+-+.+. .+|+.+|+-.+..+ .+.|+... ..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 4778999999999999998876552 35888888777531 12232211 111111111
Q ss_pred cchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEec
Q 005667 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~t 466 (684)
.-.....+||+|||.|.|... -|+.|..+++... ...+..++|+-
T Consensus 503 ---~k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fdWpt------------------~~~sKLvvi~I 547 (767)
T KOG1514|consen 503 ---PKPKRSTTVVLIDELDILVTR--------------SQDVLYNIFDWPT------------------LKNSKLVVIAI 547 (767)
T ss_pred ---CCCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhcCCc------------------CCCCceEEEEe
Confidence 012456789999999999876 5777777777211 11233455554
Q ss_pred CCccc-HHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccce-EEEcCCCCHHH
Q 005667 467 GAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQ 544 (684)
Q Consensus 467 gn~~d-Le~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~ee 544 (684)
+|--| +++++ .+-.-+|++. -+.|.||+.++
T Consensus 548 aNTmdlPEr~l-----------------------------------------------~nrvsSRlg~tRi~F~pYth~q 580 (767)
T KOG1514|consen 548 ANTMDLPERLL-----------------------------------------------MNRVSSRLGLTRICFQPYTHEQ 580 (767)
T ss_pred cccccCHHHHh-----------------------------------------------ccchhhhccceeeecCCCCHHH
Confidence 44333 23332 1222345543 38999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005667 545 LVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 545 l~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~a 606 (684)
+.+|+...+..+ -.|+.+|++.++++-..-.+.+|.-..+++++..-+
T Consensus 581 Lq~Ii~~RL~~~--------------~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 581 LQEIISARLKGL--------------DAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred HHHHHHHhhcch--------------hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 999998633222 347889999999986566667888888888766544
No 252
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.01 E-value=1.9e-05 Score=82.24 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=52.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---ccc--ccchHHHHHHHHhhcchhhHhhcCCEEEEc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYV--GEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~---gyv--G~~~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
.+++|+|+||||||+||.+||..+ +..++.++..++... .+. .......+.. + ...-+|+||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~-l---------~~~dlLvID 169 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLND-L---------SNVDLLVID 169 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHH-h---------ccCCEEEEe
Confidence 589999999999999999999988 566777777666420 010 0111111111 1 134599999
Q ss_pred cccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 403 EIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|++..... +-....|..+++
T Consensus 170 Dig~~~~s------------~~~~~~l~~Ii~ 189 (244)
T PRK07952 170 EIGVQTES------------RYEKVIINQIVD 189 (244)
T ss_pred CCCCCCCC------------HHHHHHHHHHHH
Confidence 99886432 114556777887
No 253
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.99 E-value=0.00015 Score=82.31 Aligned_cols=134 Identities=22% Similarity=0.308 Sum_probs=77.3
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHh-hhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIY-NESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAra 349 (684)
|-+.|...|.|.+.+|+++.-++....-+.. ++.. -.-.-|+||+|.|-|.|+.|.|.
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGsh---------------------lRGDINiLlvGDPSvAKSQLLRy 353 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSH---------------------LRGDINILLVGDPSVAKSQLLRY 353 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCCce---------------------eccceeEEEecCchHHHHHHHHH
Confidence 4556677799999999998877642111110 1110 01126999999999999999999
Q ss_pred HHHHhCCCEEEE----ecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCc
Q 005667 350 LARYVNVPFVIA----DATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (684)
Q Consensus 350 IA~~l~~pfv~v----~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~ 421 (684)
+-+......-.. +...++. ..-.| +..+. . +....+..||+.|||+|++..-
T Consensus 354 VLntAplAI~TTGRGSSGVGLTAAVTtD~eTG---ERRLE---A---GAMVLADRGVVCIDEFDKMsDi----------- 413 (818)
T KOG0479|consen 354 VLNTAPLAIATTGRGSSGVGLTAAVTTDQETG---ERRLE---A---GAMVLADRGVVCIDEFDKMSDI----------- 413 (818)
T ss_pred HHhcccccccccCCCCCCccceeEEeeccccc---hhhhh---c---CceEEccCceEEehhcccccch-----------
Confidence 865542111000 0001110 00111 11111 1 1122367899999999999764
Q ss_pred hHHHHHHHHHHHhCceeeecCCCCccC
Q 005667 422 GEGVQQALLKMLEGTVVNVPEKGARKH 448 (684)
Q Consensus 422 ~e~vq~~LL~~LEg~~v~Vp~~G~~~~ 448 (684)
-.-++-++||...|+|..-|-...
T Consensus 414 ---DRvAIHEVMEQqtVTIaKAGIHas 437 (818)
T KOG0479|consen 414 ---DRVAIHEVMEQQTVTIAKAGIHAS 437 (818)
T ss_pred ---hHHHHHHHHhcceEEeEeccchhh
Confidence 345788999977777755554433
No 254
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.97 E-value=6.9e-06 Score=91.44 Aligned_cols=138 Identities=21% Similarity=0.304 Sum_probs=80.7
Q ss_pred HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005667 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraI 350 (684)
+.+.+...|+|.+++|+.|.-++...--+ . +-++.+. .-.-|++|.|.||+.|+.|.+.|
T Consensus 336 La~SiAPEIyGheDVKKaLLLlLVGgvd~------------------~-~~dGMKI-RGdINicLmGDPGVAKSQLLkyi 395 (721)
T KOG0482|consen 336 LAASIAPEIYGHEDVKKALLLLLVGGVDK------------------S-PGDGMKI-RGDINICLMGDPGVAKSQLLKYI 395 (721)
T ss_pred HHHhhchhhccchHHHHHHHHHhhCCCCC------------------C-CCCCcee-ecceeEEecCCCchhHHHHHHHH
Confidence 55566667999999999998777411000 0 0001111 11269999999999999999999
Q ss_pred HHHhCCCEEEEeccccccccccccchHHHHHHH----HhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHH
Q 005667 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKL----LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 351 A~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l----~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq 426 (684)
.+..-...+. .... +.=+|-. .+..++- .....+.+..+.+||..|||+||+... -.
T Consensus 396 ~rlapRgvYT-TGrG---SSGVGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------------DR 456 (721)
T KOG0482|consen 396 SRLAPRGVYT-TGRG---SSGVGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------------DR 456 (721)
T ss_pred HhcCccccee-cCCC---CCccccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------hh
Confidence 8876332221 1110 0011111 0111110 001122334567899999999999776 45
Q ss_pred HHHHHHHhCceeeecCCCCcc
Q 005667 427 QALLKMLEGTVVNVPEKGARK 447 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~ 447 (684)
.++-++||...+.|..-|-.+
T Consensus 457 tAIHEVMEQQTISIaKAGI~T 477 (721)
T KOG0482|consen 457 TAIHEVMEQQTISIAKAGINT 477 (721)
T ss_pred HHHHHHHHhhhhhhhhhcccc
Confidence 678899997777775444433
No 255
>PRK06526 transposase; Provisional
Probab=97.95 E-value=7.2e-06 Score=85.89 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=51.2
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEID 405 (684)
...+++|+||||||||+||.+|+..+ +.....+++.++...-..... ...+...+.. -....+|+|||++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-~~~~~~~l~~------l~~~dlLIIDD~g 169 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-AGRLQAELVK------LGRYPLLIVDEVG 169 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-cCcHHHHHHH------hccCCEEEEcccc
Confidence 34799999999999999999998776 444444444443311000000 0011111111 1234699999999
Q ss_pred ccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 406 kL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.+..+. ..++.|..+++
T Consensus 170 ~~~~~~------------~~~~~L~~li~ 186 (254)
T PRK06526 170 YIPFEP------------EAANLFFQLVS 186 (254)
T ss_pred cCCCCH------------HHHHHHHHHHH
Confidence 876431 15667788876
No 256
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.94 E-value=1.2e-05 Score=79.74 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=51.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~---~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.+++|+||||||||+||.++++.+ +.+...++..++.. ..+........+..+. .--+|+|||+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~----------~~dlLilDDl 117 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK----------RVDLLILDDL 117 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH----------TSSCEEEETC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc----------cccEeccccc
Confidence 799999999999999999998776 66777788776642 1111111122232221 2358999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 405 DkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.....+ +...+.|..+++
T Consensus 118 G~~~~~------------~~~~~~l~~ii~ 135 (178)
T PF01695_consen 118 GYEPLS------------EWEAELLFEIID 135 (178)
T ss_dssp TSS---------------HHHHHCTHHHHH
T ss_pred ceeeec------------ccccccchhhhh
Confidence 875433 125667888887
No 257
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.92 E-value=3.2e-05 Score=83.97 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=52.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---cccccc--hHHHHHHHHhhcchhhHhhcCCEEEEc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGED--VESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~---gyvG~~--~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
.+++|+||||||||+||.+||+.+ +..++.+++.++... ...... ....+..+ ..--+|+||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l----------~~~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL----------INCDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh----------ccCCEEEEe
Confidence 689999999999999999999987 556777777665420 000000 00001111 122589999
Q ss_pred cccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 403 EIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|+...... +..++.|..+++
T Consensus 254 DlG~e~~t------------~~~~~~Lf~iin 273 (329)
T PRK06835 254 DLGTEKIT------------EFSKSELFNLIN 273 (329)
T ss_pred ccCCCCCC------------HHHHHHHHHHHH
Confidence 99886433 116677888887
No 258
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.87 E-value=4.5e-05 Score=69.20 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=46.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~ 412 (684)
|.|+||||+|||++|+.|++.+...+-......+ |........+.. + ..+.++++||+......-
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v----y~~~~~~~~w~g------Y----~~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV----YTRNPGDKFWDG------Y----QGQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE----EeCCCccchhhc------c----CCCcEEEEeecCcccccc-
Confidence 5799999999999999998877422200000010 000000111100 1 134699999999875430
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceee
Q 005667 413 SLNISRDVSGEGVQQALLKMLEGTVVN 439 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~ 439 (684)
.......|+++++...+.
T Consensus 66 ---------~~~~~~~l~~l~s~~~~~ 83 (107)
T PF00910_consen 66 ---------NYSDESELIRLISSNPFQ 83 (107)
T ss_pred ---------chHHHHHHHHHHhcCCcc
Confidence 112567788888854443
No 259
>PRK06921 hypothetical protein; Provisional
Probab=97.86 E-value=2.5e-05 Score=82.33 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=28.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~s~l 366 (684)
.+++|+||||||||+||.+||+.+ +...+.+...++
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 689999999999999999999876 344555665443
No 260
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.85 E-value=0.0003 Score=72.88 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=49.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
..-.+.||+|||||++.+.+|+.++.+++.++|++-.+ ...+..++... ...++.+.+||++++..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~-----~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGL-----AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence 45578999999999999999999999999999987653 23344444322 134678999999999876
No 261
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00018 Score=75.54 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=55.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec------c--------ccc---c-ccccccchHHHHHHHHhhcch-h
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA------T--------TLT---Q-AGYVGEDVESILYKLLTVSDY-N 390 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~------s--------~l~---~-~gyvG~~~~~~l~~l~~~a~~-~ 390 (684)
++.+||+||+|+||..+|.++|+.+-+.--.-.| . ++. + ..-++. +.++++...... .
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~i---d~ir~l~~~l~~~s 83 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKK---EDALSIINKLNRPS 83 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCH---HHHHHHHHHHccCc
Confidence 4899999999999999999999887321000001 0 110 0 001222 233333332111 1
Q ss_pred hHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 391 v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+.+...|++||++|+|... ..++||+.+|+
T Consensus 84 ~e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LEE 114 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIEE 114 (261)
T ss_pred hhcCCCEEEEeccHhhhCHH--------------HHHHHHHhhcC
Confidence 12234679999999999988 99999999993
No 262
>PRK09183 transposase/IS protein; Provisional
Probab=97.77 E-value=3.6e-05 Score=80.77 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=51.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDk 406 (684)
..+++|+||||||||+||.+++..+ +.....+++.++... +........+...+... .....+++|||++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~-l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdlg~ 175 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ-LSTAQRQGRYKTTLQRG-----VMAPRLLIIDEIGY 175 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH-HHHHHHCCcHHHHHHHH-----hcCCCEEEEccccc
Confidence 4689999999999999999997664 445555665554311 10000000111112110 12346999999987
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHh
Q 005667 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 L~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
....+ ..++.|+++++
T Consensus 176 ~~~~~------------~~~~~lf~li~ 191 (259)
T PRK09183 176 LPFSQ------------EEANLFFQVIA 191 (259)
T ss_pred CCCCh------------HHHHHHHHHHH
Confidence 65431 15667888886
No 263
>PF05729 NACHT: NACHT domain
Probab=97.76 E-value=0.00043 Score=65.46 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh
Q 005667 332 NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.+++.|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999998776
No 264
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.66 E-value=0.00096 Score=71.10 Aligned_cols=138 Identities=18% Similarity=0.255 Sum_probs=78.0
Q ss_pred cCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHH
Q 005667 395 QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEK 474 (684)
Q Consensus 395 ~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~ 474 (684)
.+-||+|||+|++.++ ....+|+.+. ...+..|++||++....-+.+
T Consensus 172 ~~iViiIDdLDR~~~~--------------~i~~~l~~ik-------------------~~~~~~~i~~Il~~D~~~l~~ 218 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE--------------EIVELLEAIK-------------------LLLDFPNIIFILAFDPEILEK 218 (325)
T ss_pred ceEEEEEcchhcCCcH--------------HHHHHHHHHH-------------------HhcCCCCeEEEEEecHHHHHH
Confidence 4568999999999877 5555666665 134557899999876544544
Q ss_pred HHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccc-cceEEEcCCCCHHHHHHHHhchH
Q 005667 475 TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR-FPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 475 ~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R-~d~iI~f~pLs~eel~~Il~~~l 553 (684)
.+....... + ... ...+++++ |+..+.+++++..++.+.+...+
T Consensus 219 ai~~~~~~~---~--------------~~~------------------~~~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~ 263 (325)
T PF07693_consen 219 AIEKNYGEG---F--------------DEI------------------DGREYLEKIIQVPFSLPPPSPSDLERYLNELL 263 (325)
T ss_pred HHHhhcCcc---c--------------ccc------------------cHHHHHHhhcCeEEEeCCCCHHHHHHHHHHHH
Confidence 443321100 0 000 11233333 35679999999999998888765
Q ss_pred HHHHHHHHHHHhhCCcceec----------CHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 554 NALGKQYRKMFQMNGVKLHF----------TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 554 ~~L~kqy~~~l~~~gi~l~i----------~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+.+....... ...-.+ ....+..+....-....+.|.+++++..+..
T Consensus 264 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~~~ 320 (325)
T PF07693_consen 264 ESLESETNES----DDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSLSL 320 (325)
T ss_pred HHhhhccccc----cchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Confidence 4443332211 100001 1233333333211235678999999987653
No 265
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.61 E-value=9.9e-05 Score=79.40 Aligned_cols=69 Identities=14% Similarity=0.300 Sum_probs=44.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc--ccccc-chHHHHHHHHhhcchhhHhhcCCEEEEccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA--GYVGE-DVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~--gyvG~-~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.+++|+||+|||||+||.++|+.+ +.+...+.+.++... ...+. +....+.. + ..--+|+|||+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~-l---------~~~dlLiIDDi 226 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA-V---------KEAPVLMLDDI 226 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH-h---------cCCCEEEEecC
Confidence 699999999999999999999988 556666666655310 00111 11111111 1 23369999999
Q ss_pred cccch
Q 005667 405 DKITK 409 (684)
Q Consensus 405 DkL~~ 409 (684)
..-..
T Consensus 227 G~e~~ 231 (306)
T PRK08939 227 GAEQM 231 (306)
T ss_pred CCccc
Confidence 87543
No 266
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.46 E-value=0.0018 Score=70.66 Aligned_cols=60 Identities=28% Similarity=0.347 Sum_probs=42.1
Q ss_pred ccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC-
Q 005667 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN- 355 (684)
Q Consensus 277 ~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~- 355 (684)
+.++|.++++..+...+. ...++ .+..++.++|.||+|+|||++++.|-+.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk----~AA~g----------------------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFK----SAAQG----------------------LEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHH----HHHhc----------------------cCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 347999999999988664 11111 122247899999999999999999987762
Q ss_pred CCEEEEe
Q 005667 356 VPFVIAD 362 (684)
Q Consensus 356 ~pfv~v~ 362 (684)
.+++.+.
T Consensus 115 y~~Y~l~ 121 (358)
T PF08298_consen 115 YPIYTLK 121 (358)
T ss_pred EEEEEec
Confidence 2444443
No 267
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.45 E-value=0.00019 Score=69.53 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=36.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
.+|.++..+.+...+. ... ...+..++++|++|+|||++.+.+...+..+
T Consensus 2 fvgR~~e~~~l~~~l~-~~~----------------------------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ----------------------------SGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS----------------------------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH-HHH----------------------------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4788888888887762 000 0113799999999999999999887666322
Q ss_pred --EEEEecccc
Q 005667 358 --FVIADATTL 366 (684)
Q Consensus 358 --fv~v~~s~l 366 (684)
++.+++...
T Consensus 53 ~~~~~~~~~~~ 63 (185)
T PF13191_consen 53 GYVISINCDDS 63 (185)
T ss_dssp --EEEEEEETT
T ss_pred CEEEEEEEecc
Confidence 677776654
No 268
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.44 E-value=0.00017 Score=91.38 Aligned_cols=116 Identities=25% Similarity=0.290 Sum_probs=77.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-ccccccchHHHHHH-HHhhcchhhH-hhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILYK-LLTVSDYNVA-AAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~-~gyvG~~~~~~l~~-l~~~a~~~v~-~a~~gVLfIDEIDkL 407 (684)
..+||.||+|+|||.+++-+|+..+..+++++-.+.+. ..|+|........+ .++... .+. .-.+..+++||++..
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~-LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGV-LVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhH-HHHHHHhCCEEEecccccc
Confidence 58999999999999999999999999999888765543 23444110000000 000000 111 224678999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhC-ceeeecCCCCccCCCCCeEEeecCce
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEG-TVVNVPEKGARKHPRGDNIQIDTKDI 461 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg-~~v~Vp~~G~~~~~~~~~i~Idtsni 461 (684)
+.+ ++.+|.+++++ +.+.+|+..+.......++...+.|.
T Consensus 520 ~~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 520 PHD--------------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred chH--------------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 877 99999999984 77777776666655555444444444
No 269
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.41 E-value=0.00014 Score=66.24 Aligned_cols=31 Identities=45% Similarity=0.761 Sum_probs=26.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
+++.|+||+||||+|+.||+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999877665544
No 270
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.0016 Score=68.06 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=47.4
Q ss_pred cccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 525 PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 525 PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
.++..|++.-+.++|++.++....++..+. . . -.-.--++++++.++.... +++-++|+.++.
T Consensus 185 ~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le----~-----a-~~~~~l~~~~a~~~i~~~s-------qg~P~lin~~~~ 247 (269)
T COG3267 185 RELEQRIDIRIELPPLTEAETGLYLRHRLE----G-----A-GLPEPLFSDDALLLIHEAS-------QGIPRLINNLAT 247 (269)
T ss_pred HhhhheEEEEEecCCcChHHHHHHHHHHHh----c-----c-CCCcccCChhHHHHHHHHh-------ccchHHHHHHHH
Confidence 567789997799999999988887775321 1 1 1113347999999999864 335566776666
Q ss_pred HHHhcC
Q 005667 605 DAMYEI 610 (684)
Q Consensus 605 ~al~e~ 610 (684)
.|+-.+
T Consensus 248 ~Al~~a 253 (269)
T COG3267 248 LALDAA 253 (269)
T ss_pred HHHHHH
Confidence 666543
No 271
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.34 E-value=0.0089 Score=66.90 Aligned_cols=161 Identities=19% Similarity=0.311 Sum_probs=95.5
Q ss_pred cCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHH
Q 005667 395 QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEK 474 (684)
Q Consensus 395 ~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~ 474 (684)
++-+|+|||++.+-+- .++.+++...+.|++++++.. +| ...++.|+++|+..=++
T Consensus 239 ~GLlI~lDE~e~l~kl------~~~~~R~~~ye~lr~lidd~~-----~G------------~~~gL~~~~~gTPef~e- 294 (416)
T PF10923_consen 239 KGLLILLDELENLYKL------RNDQAREKNYEALRQLIDDID-----QG------------RAPGLYFVFAGTPEFFE- 294 (416)
T ss_pred CceEEEEechHHHHhc------CChHHHHHHHHHHHHHHHHHh-----cC------------CCCceEEEEeeCHHHhh-
Confidence 3558999999998654 334556778999999998311 11 24568888888853211
Q ss_pred HHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHH
Q 005667 475 TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN 554 (684)
Q Consensus 475 ~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~ 554 (684)
..+ .+-.+++...+++-.... -.+.+.+-...+|.+.+|+.+++..++.+
T Consensus 295 --D~r-----------------rGv~sY~AL~~RL~~~~~--------~~~~~~n~~~pvIrL~~l~~eel~~l~~k--- 344 (416)
T PF10923_consen 295 --DGR-----------------RGVYSYEALAQRLAEEFF--------ADDGFDNLRAPVIRLQPLTPEELLELLEK--- 344 (416)
T ss_pred --Ccc-----------------ccccccHHHHHHHhcccc--------ccccccCccCceecCCCCCHHHHHHHHHH---
Confidence 111 112234443333332211 13666666777999999999999988875
Q ss_pred HHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCCh--HHHHHHHHHH--HHHHHhcCCCC
Q 005667 555 ALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA--RGLRSLLENI--LMDAMYEIPDV 613 (684)
Q Consensus 555 ~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GA--R~Lr~iIe~~--l~~al~e~~~~ 613 (684)
+..-|.. ..+....++++.+..+++..+..-+|. +.-|.+|... +++.+.+.|+.
T Consensus 345 -lr~i~a~---~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~Ld~~~q~p~~ 403 (416)
T PF10923_consen 345 -LRDIYAE---AYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDVLDILEQNPDF 403 (416)
T ss_pred -HHHHHHh---hCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 3232322 234457899999999998866554442 2223333333 44455555553
No 272
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.33 E-value=0.0059 Score=69.50 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
+-+||+||+|||||+..+.++++++..+....
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 67889999999999999999999998777665
No 273
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00037 Score=79.41 Aligned_cols=97 Identities=33% Similarity=0.559 Sum_probs=75.1
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~ 408 (684)
++..++++||||+|||+++++++.. +..+..++..... .+|.|.. +..++..+..+.. ..++++++||+|.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEK----LAPSIIFIDEIDALA 89 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHH----hCCCeEeechhhhcc
Confidence 3589999999999999999999998 6655666776666 6788887 5667777766543 355999999999999
Q ss_pred hhccccccCCCCchHHHHHHHHHHHhC
Q 005667 409 KKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
+.+.. ........+..+|+..|++
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~ 113 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDG 113 (494)
T ss_pred cCccc---cccchhhHHHHHHHHhccc
Confidence 98665 2233345589999999984
No 274
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.30 E-value=0.00047 Score=64.62 Aligned_cols=32 Identities=50% Similarity=0.639 Sum_probs=25.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
++++||||+|||++++.++..+ +.+.+.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999999998776 4555555553
No 275
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.24 E-value=0.0003 Score=67.59 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=29.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
+..++|+|+||||||++|+.+|+.++.+++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 368999999999999999999999998887544
No 276
>PHA00729 NTP-binding motif containing protein
Probab=97.16 E-value=0.00068 Score=69.93 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.+++|+|+||||||++|.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999875
No 277
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.09 E-value=0.0012 Score=65.14 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh
Q 005667 332 NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998887
No 278
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.06 E-value=0.00071 Score=77.95 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=43.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-CCC
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NVP 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l-~~p 357 (684)
++|++++|+.+...+.....++ . .....++|.||||+|||+||+.||+.+ ..|
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl----~----------------------~~~~IL~LvGPpG~GKSsLa~~la~~le~~~ 131 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGL----E----------------------EKKQILYLLGPVGGGKSSLAERLKSLMERVP 131 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhc----C----------------------CCCceEEEecCCCCCchHHHHHHHHHHHhCc
Confidence 6999999999998875222211 1 123688999999999999999999988 346
Q ss_pred EEEEec
Q 005667 358 FVIADA 363 (684)
Q Consensus 358 fv~v~~ 363 (684)
++.+..
T Consensus 132 ~Y~~kg 137 (644)
T PRK15455 132 IYVLKA 137 (644)
T ss_pred ceeecC
Confidence 666544
No 279
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.00051 Score=67.39 Aligned_cols=33 Identities=42% Similarity=0.696 Sum_probs=29.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
..++++||||+||||+|+.|++.++.+++.+|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 368999999999999999999999999887775
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.05 E-value=0.002 Score=64.80 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=48.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---cccccchHHHHHHHHhhcchh-h----HhhcCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYN-V----AAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~---gyvG~~~~~~l~~l~~~a~~~-v----~~a~~gVL 399 (684)
+..++.||||||||++++.+.+.+ +..++.+..+.-... .-.|.. ...+..++...... . ......+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEE
Confidence 467889999999999999987766 445555554422100 000000 01111222111110 0 02345799
Q ss_pred EEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 400 fIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+|||+..+... ....|++.++
T Consensus 98 iVDEasmv~~~--------------~~~~ll~~~~ 118 (196)
T PF13604_consen 98 IVDEASMVDSR--------------QLARLLRLAK 118 (196)
T ss_dssp EESSGGG-BHH--------------HHHHHHHHS-
T ss_pred EEecccccCHH--------------HHHHHHHHHH
Confidence 99999999876 6777777765
No 281
>PRK13947 shikimate kinase; Provisional
Probab=97.04 E-value=0.00058 Score=66.11 Aligned_cols=32 Identities=38% Similarity=0.596 Sum_probs=29.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
+++|.|+||||||++|+.+|+.++.+|+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 79999999999999999999999999976553
No 282
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.04 E-value=0.012 Score=64.56 Aligned_cols=63 Identities=27% Similarity=0.279 Sum_probs=49.8
Q ss_pred hcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+...|.+.+..++.+...+-+. + ..-|.++.|+|.+|||||.+.+++-+.+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~-----------------~------------~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNN-----------------S------------CTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred cccCccchHHHHHHHHHHhCCC-----------------C------------cccceeEEEeccCCCchhHHHHHHHhhc
Confidence 4556788899999888877310 0 1124788999999999999999999999
Q ss_pred CCCEEEEecccc
Q 005667 355 NVPFVIADATTL 366 (684)
Q Consensus 355 ~~pfv~v~~s~l 366 (684)
+.+.+.++|-+.
T Consensus 55 n~~~vw~n~~ec 66 (438)
T KOG2543|consen 55 NLENVWLNCVEC 66 (438)
T ss_pred CCcceeeehHHh
Confidence 999999988654
No 283
>PRK10536 hypothetical protein; Provisional
Probab=97.01 E-value=0.0042 Score=65.35 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.||+|||||+||.++|..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58889999999999999999874
No 284
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.99 E-value=0.0014 Score=68.61 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=46.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------EEEEecc---cccc----------ccccccchHH---HHHHHHhhcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT---TLTQ----------AGYVGEDVES---ILYKLLTVSD 388 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p------fv~v~~s---~l~~----------~gyvG~~~~~---~l~~l~~~a~ 388 (684)
..++|+||+|||||++++.+++.+... ++.+... ++.+ ..-.+..... ....+...+.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~ 96 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAK 96 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 688999999999999999999877542 2221111 0000 0001112122 2223333343
Q ss_pred hhhHhhcCCEEEEccccccchh
Q 005667 389 YNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 389 ~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
.......+.+||+||+.++...
T Consensus 97 ~~~~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 97 RLVEHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHHHCCCCEEEEEECHHHhhhh
Confidence 3333456779999999998765
No 285
>PRK07261 topology modulation protein; Provisional
Probab=96.97 E-value=0.0013 Score=64.70 Aligned_cols=43 Identities=30% Similarity=0.531 Sum_probs=33.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGED 375 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~ 375 (684)
.++++|+||+|||++|+.|++.++.+++..|.-... ++|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence 478999999999999999999999998877654333 3344333
No 286
>PRK03839 putative kinase; Provisional
Probab=96.96 E-value=0.00072 Score=66.35 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=27.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
.++|+|+||+||||+|+.+|+.++.+|+..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999998886544
No 287
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.92 E-value=0.00087 Score=63.36 Aligned_cols=31 Identities=45% Similarity=0.760 Sum_probs=27.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
+++|+|+||+|||++|+.+|+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998887555
No 288
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.91 E-value=0.00074 Score=74.35 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.5
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
+++++.|+|++|+|||+|.-++...+..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 4589999999999999999999877743
No 289
>PRK00625 shikimate kinase; Provisional
Probab=96.90 E-value=0.0009 Score=66.25 Aligned_cols=32 Identities=38% Similarity=0.659 Sum_probs=28.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
+++|+|.||+|||++++.+|+.++.+|+.+|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 68999999999999999999999999876653
No 290
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.88 E-value=0.0016 Score=72.15 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=48.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC-----EEEEecccc---------------ccccccccchHHHHH---HHHhhc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP-----FVIADATTL---------------TQAGYVGEDVESILY---KLLTVS 387 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p-----fv~v~~s~l---------------~~~gyvG~~~~~~l~---~l~~~a 387 (684)
...+|+||||||||+|++.|++..... .+.+...+. ..+. ..+..+..++ ..+..+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st-~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST-FDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC-CCCCHHHHHHHHHHHHHHH
Confidence 678999999999999999998877431 111111111 0011 1112222222 344445
Q ss_pred chhhHhhcCCEEEEccccccchh
Q 005667 388 DYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 388 ~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
..........+||||||+++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHH
Confidence 55555667889999999999875
No 291
>PRK04296 thymidine kinase; Provisional
Probab=96.85 E-value=0.0042 Score=62.15 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=23.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v 361 (684)
.-.+++||+|+|||+++..++..+ +...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999998887665 4444444
No 292
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.84 E-value=0.17 Score=57.33 Aligned_cols=38 Identities=39% Similarity=0.558 Sum_probs=29.9
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
+|..++|+|++|+|||+++..+|..+ +.....+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 45899999999999999999998877 445555665544
No 293
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.82 E-value=0.0025 Score=71.27 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=59.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH--h-CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY--V-NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~--l-~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
.|+++.||+|||||++|.+++.. + ..-| +++ ...+..+.....+. -+..-+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG~f--~T~-------------a~Lf~~L~~~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISGGT--ITV-------------AKLFYNISTRQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcCCc--CcH-------------HHHHHHHHHHHHhh--hccCCEEEEEcCCCC
Confidence 79999999999999999999766 2 1111 111 22222222111111 123468999999997
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~ 470 (684)
...+. ....+.|...|+..... . +. ..-..+.-+++-||..
T Consensus 273 p~~~~----------~~~v~imK~yMesg~fs--------R--G~--~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 273 KFAKP----------KELIGILKNYMESGSFT--------R--GD--ETKSSDASFVFLGNVP 313 (449)
T ss_pred cCCch----------HHHHHHHHHHHHhCcee--------c--cc--eeeeeeeEEEEEcccC
Confidence 76522 12778888889832222 1 11 2234566777777754
No 294
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0095 Score=71.91 Aligned_cols=76 Identities=26% Similarity=0.379 Sum_probs=54.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----------CCCEEEEecccccc-ccccccchHHHHHHHHhhcchhhHhhcCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l----------~~pfv~v~~s~l~~-~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVL 399 (684)
+|-+|+|+||+|||.++.-+|+.. ...++.++...+.. +.+.|+ .+..+..+...... ...+-||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge-~E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGE-FEERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchH-HHHHHHHHHHHHhc---CCCcEEE
Confidence 688999999999999999998877 23466677665442 344554 36677777664321 2345689
Q ss_pred EEccccccchh
Q 005667 400 YIDEVDKITKK 410 (684)
Q Consensus 400 fIDEIDkL~~~ 410 (684)
||||++-+...
T Consensus 285 figelh~lvg~ 295 (898)
T KOG1051|consen 285 FLGELHWLVGS 295 (898)
T ss_pred EecceeeeecC
Confidence 99999999876
No 295
>PRK14532 adenylate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=65.20 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
+++|.||||+|||++|+.||+.++.++ ++..++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHH
Confidence 589999999999999999999998655 454443
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.77 E-value=0.00077 Score=62.90 Aligned_cols=30 Identities=47% Similarity=0.729 Sum_probs=24.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s 364 (684)
+++.||||+|||++|+.+++.++ ...++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D 31 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQD 31 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHH
Confidence 68999999999999999999987 3444443
No 297
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.003 Score=61.92 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.++|+||+|||+++..+++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 688999999999999999999888
No 298
>PRK06217 hypothetical protein; Validated
Probab=96.74 E-value=0.0014 Score=64.72 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=28.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
..|+|.|+||+|||++|+.|++.++.+++..|.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 368999999999999999999999988766553
No 299
>PRK13948 shikimate kinase; Provisional
Probab=96.74 E-value=0.0016 Score=65.02 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.1
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
++.+++|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4589999999999999999999999999998555
No 300
>PRK13949 shikimate kinase; Provisional
Probab=96.70 E-value=0.0015 Score=64.23 Aligned_cols=32 Identities=44% Similarity=0.682 Sum_probs=29.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
..++|+|+||+|||++++.+|+.++.+++..|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 47899999999999999999999999887766
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.68 E-value=0.0039 Score=60.87 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=23.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
+|+.||||||||+++..++... +.+.+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999998886544 455555554
No 302
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.65 E-value=0.015 Score=64.82 Aligned_cols=70 Identities=20% Similarity=0.385 Sum_probs=44.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccch
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~ 409 (684)
.++++||-+||||++++.+.+.+...++.++..++.... ....+.+......... ....||||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~~~~~~-----~~~yifLDEIq~v~~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYIELKER-----EKSYIFLDEIQNVPD 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHHHhhcc-----CCceEEEecccCchh
Confidence 789999999999999999988875556666665554211 1111222222221110 446999999999753
No 303
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.65 E-value=0.0016 Score=63.66 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~ 367 (684)
++++||||+|||++|+.||+.++. ..+++.++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 689999999999999999999975 455665443
No 304
>PRK14530 adenylate kinase; Provisional
Probab=96.64 E-value=0.0019 Score=65.44 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..++|.||||+|||++|+.||+.++.+++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 479999999999999999999999876653
No 305
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.63 E-value=0.0018 Score=60.46 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=27.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
+++.|+||+|||++|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 579999999999999999999999987665
No 306
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0016 Score=64.52 Aligned_cols=33 Identities=39% Similarity=0.752 Sum_probs=29.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
.+++|+|++|+|||++.+++|+.++.+|+-.|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 589999999999999999999999999975554
No 307
>PRK14531 adenylate kinase; Provisional
Probab=96.58 E-value=0.0022 Score=63.41 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
..++++||||+|||++++.||+.++.+++ ++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~ 36 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDL 36 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccH
Confidence 57999999999999999999999987654 44444
No 308
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.58 E-value=0.0019 Score=61.20 Aligned_cols=27 Identities=44% Similarity=0.840 Sum_probs=24.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
++|.|+||+|||++|+.+++.++.+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999999876654
No 309
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.57 E-value=0.0043 Score=69.02 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=46.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------EEEEecc---cccc----------ccccccchHH---HHHHHHhhcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT---TLTQ----------AGYVGEDVES---ILYKLLTVSD 388 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p------fv~v~~s---~l~~----------~gyvG~~~~~---~l~~l~~~a~ 388 (684)
..++|+||||+|||++++.+++.+... ++.+... ++.+ ..-.+..... ....+...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 688999999999999999999886432 1111100 1000 0011111111 1223333444
Q ss_pred hhhHhhcCCEEEEccccccchh
Q 005667 389 YNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 389 ~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
........-||||||++++...
T Consensus 249 ~~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHcCCCeEEEEEChhHHHHH
Confidence 4445566779999999998764
No 310
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.56 E-value=0.002 Score=63.44 Aligned_cols=32 Identities=44% Similarity=0.727 Sum_probs=26.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
++|+||||+|||++|+.||+.++.+++ +..++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHH
Confidence 789999999999999999999876554 44443
No 311
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.54 E-value=0.0028 Score=65.21 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.0
Q ss_pred cceEEEEccCCCcHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA 351 (684)
+..+||+|+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3679999999999999999986
No 312
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.53 E-value=0.0057 Score=59.77 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=32.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~ 367 (684)
..++|+|.||+|||++|+++.+.+ +.+.+.+|...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 678999999999999999999888 6788889987775
No 313
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.51 E-value=0.0027 Score=61.59 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=29.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
.+++|+|++|+|||++|+.+|+.++.+|+..|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 468899999999999999999999999875553
No 314
>PHA02774 E1; Provisional
Probab=96.51 E-value=0.016 Score=66.97 Aligned_cols=76 Identities=18% Similarity=0.391 Sum_probs=49.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE-EeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccch
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI-ADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~-v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~ 409 (684)
..++|+||||||||++|-+|++.++...+. +|... .-| ++.+ ...-|++|||+-.-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw--------Lqpl----------~d~ki~vlDD~t~~~w 493 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW--------LQPL----------ADAKIALLDDATHPCW 493 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc--------cchh----------ccCCEEEEecCcchHH
Confidence 689999999999999999999999655433 55321 001 1111 1224899999932211
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeee
Q 005667 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~V 440 (684)
. =+...|..+|+|..+.|
T Consensus 494 ~-------------y~d~~Lrn~LdG~~v~l 511 (613)
T PHA02774 494 D-------------YIDTYLRNALDGNPVSI 511 (613)
T ss_pred H-------------HHHHHHHHHcCCCccee
Confidence 1 04556788889887665
No 315
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.50 E-value=0.0022 Score=62.90 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s 364 (684)
..++|.|+||+|||++|+.+++.+..+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 5789999999999999999999988777655543
No 316
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0023 Score=62.04 Aligned_cols=35 Identities=34% Similarity=0.645 Sum_probs=29.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~ 367 (684)
.++|++|-||||||++|..||..++.+++ +++++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i--~isd~v 42 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYI--EISDLV 42 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceE--ehhhHH
Confidence 69999999999999999999999987764 555554
No 317
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.49 E-value=0.002 Score=61.98 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=23.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
++|.||+|+|||++|+.+++.++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 468999999999999999999986654
No 318
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.48 E-value=0.018 Score=60.19 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+.|+|++|+|||+||+.+++.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEEcCCcCCcceeeeecccc
Confidence 78889999999999999999877
No 319
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.47 E-value=0.0029 Score=62.26 Aligned_cols=33 Identities=39% Similarity=0.738 Sum_probs=30.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
.+++|+|++|+|||++++.+|+.++.+++..|.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 689999999999999999999999988876664
No 320
>PRK13946 shikimate kinase; Provisional
Probab=96.46 E-value=0.0026 Score=63.06 Aligned_cols=34 Identities=35% Similarity=0.691 Sum_probs=30.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
+..++|+|.+|+|||++++.+|+.++.+|+..|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 3789999999999999999999999999876663
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=96.45 E-value=0.015 Score=63.46 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=26.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
+..++|+||||+|||+++..+|..+ +.....+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4789999999999999998888776 3344445544
No 322
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.44 E-value=0.51 Score=53.40 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=29.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
+..++|+|++|+||||++..+|..+ +.....+++..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 4788999999999999999998777 555666666443
No 323
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.44 E-value=0.1 Score=54.04 Aligned_cols=34 Identities=32% Similarity=0.585 Sum_probs=27.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
++|+|+||+|||++|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999987 345666655434
No 324
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.007 Score=62.58 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=46.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--------CCEEEEecc-ccccccccccchHHHHH--HHHhhc---c---hhhHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN--------VPFVIADAT-TLTQAGYVGEDVESILY--KLLTVS---D---YNVAA 393 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~--------~pfv~v~~s-~l~~~gyvG~~~~~~l~--~l~~~a---~---~~v~~ 393 (684)
.+.|+.||||||||++.|-||+.+. .....+|-. ++. .+..|...-..-+ +.+... . -.+..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa-g~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA-GCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh-ccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 6899999999999999999998872 235556644 333 2333332111111 111100 0 01345
Q ss_pred hcCCEEEEcccccc
Q 005667 394 AQQGIVYIDEVDKI 407 (684)
Q Consensus 394 a~~gVLfIDEIDkL 407 (684)
..|-|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 67889999999885
No 325
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.01 Score=59.13 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=46.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc--ccccccchHHHHHHHHhhcchhhHhhcCCEEEEc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ--AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~--~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfID 402 (684)
..+.|+|.+|+|||++|.++.+.+ +...+.+|...+.. ..-.|.+.++....+...+.....-+..|+|+|=
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviv 100 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIV 100 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 688899999999999999999888 66778888876642 1123444444444443332221122445666664
No 326
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.34 E-value=0.0035 Score=64.87 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=26.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.||||+|||++|+.||+.++.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4599999999999999999999998766543
No 327
>PRK06762 hypothetical protein; Provisional
Probab=96.33 E-value=0.0039 Score=60.19 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=28.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.-++|.|+||+|||++|+.+++.++...+.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 578899999999999999999998555555555433
No 328
>PRK06547 hypothetical protein; Provisional
Probab=96.31 E-value=0.0039 Score=61.66 Aligned_cols=32 Identities=41% Similarity=0.516 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
..|++.|++|+|||++|+.+++.++.+++..+
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 67888899999999999999999887776544
No 329
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.30 E-value=0.033 Score=58.58 Aligned_cols=34 Identities=41% Similarity=0.765 Sum_probs=25.7
Q ss_pred CCCcccccccce-EEEEccCCCcHHHHHHHHHHHh
Q 005667 321 VDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~p~~~-vLL~GPpGTGKT~LAraIA~~l 354 (684)
+++.++.++.+- ++|.||+||||||+.|.|-+.+
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 444455555544 4599999999999999997766
No 330
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.29 E-value=0.02 Score=57.77 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=21.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|+||+|+|||+.+-.+|..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 688999999999999888887666
No 331
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.29 E-value=0.007 Score=65.19 Aligned_cols=32 Identities=41% Similarity=0.664 Sum_probs=29.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
..++|+|++|+|||++++.+|+.++.+|+..+
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 78999999999999999999999999998544
No 332
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.29 E-value=0.038 Score=55.58 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC-CCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN-VPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~-~pfv~v~~s 364 (684)
..+.|.|++|+|||||++.|++.++ ..+..++..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 6888999999999999999999883 233444443
No 333
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.28 E-value=0.012 Score=56.60 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=27.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
++|.|+||+|||++|+.+++.+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999998 555566665433
No 334
>PRK14528 adenylate kinase; Provisional
Probab=96.28 E-value=0.0041 Score=61.93 Aligned_cols=30 Identities=40% Similarity=0.722 Sum_probs=26.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..+++.||||+|||++|+.+|+.++.+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 368999999999999999999999877644
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.23 E-value=0.0046 Score=60.41 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
..+++.||||+|||++|+.+++.++.+. +++.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~ 37 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDL 37 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHH
Confidence 4788999999999999999999987544 454433
No 336
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0042 Score=60.99 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=25.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
+-+.|||||||||+|+.||+.++.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999998863
No 337
>PRK02496 adk adenylate kinase; Provisional
Probab=96.20 E-value=0.0043 Score=61.11 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=25.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
.+++.||||+|||++|+.||+.++.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 58999999999999999999999866543
No 338
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.027 Score=62.70 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=22.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+..++|+||+|+|||+++..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 339
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.18 E-value=0.0041 Score=56.45 Aligned_cols=22 Identities=50% Similarity=0.607 Sum_probs=20.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l 354 (684)
|+|.|+||||||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 340
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.13 E-value=0.015 Score=58.59 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.-+++.||+|+|||+++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999987774
No 341
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.13 E-value=0.008 Score=53.85 Aligned_cols=23 Identities=48% Similarity=0.579 Sum_probs=20.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh
Q 005667 332 NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++++.||+|+|||+++-.++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999988876655
No 342
>PLN02200 adenylate kinase family protein
Probab=96.09 E-value=0.0061 Score=63.18 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=29.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~ 367 (684)
+..+++.|+||+|||++|+.||+.++.+ .++++++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 4678899999999999999999998754 56665554
No 343
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.08 E-value=0.0053 Score=62.05 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=24.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
++++||||+|||++|+.||+.++.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999866544
No 344
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.08 E-value=0.021 Score=60.51 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=53.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccch
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~ 409 (684)
.+|.||+|.+|+||++++|..|-..+..++.+..+ .+|--.+...-+..++..+.. ...+.+++|+|-+-...
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~----~~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d~qi~~~ 103 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEIT----KGYSIKDFKEDLKKALQKAGI---KGKPTVFLLTDSQIVDE 103 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTS----TTTHHHHHHHHHHHHHHHHHC---S-S-EEEEEECCCSSSC
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEee----CCcCHHHHHHHHHHHHHHHhc---cCCCeEEEecCcccchH
Confidence 38999999999999999998888888777766643 223222222334444443321 24567888888665433
Q ss_pred hccccccCCCCchHHHHHHHHHHHh
Q 005667 410 KAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
. .+..+..+|.
T Consensus 104 ~--------------fLe~in~LL~ 114 (268)
T PF12780_consen 104 S--------------FLEDINSLLS 114 (268)
T ss_dssp H--------------HHHHHHHHHH
T ss_pred h--------------HHHHHHHHHh
Confidence 3 6777777776
No 345
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.006 Score=60.76 Aligned_cols=33 Identities=39% Similarity=0.693 Sum_probs=26.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.++|.||||+||||+|+.||+.++ +..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 589999999999999999999964 555665444
No 346
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.06 E-value=0.0085 Score=57.84 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
|.|+|++|||||+|++.|++. +.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999988 77766
No 347
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.03 E-value=0.03 Score=70.43 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
+.+-++|++|+||||||+++++.+...
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 677899999999999999998777443
No 348
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.01 E-value=0.026 Score=67.67 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=50.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---C--CCEEEEecccccc---ccccccchHHHHHHHHhhcchh-----hH-hhcC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---N--VPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYN-----VA-AAQQ 396 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~--~pfv~v~~s~l~~---~gyvG~~~~~~l~~l~~~a~~~-----v~-~a~~ 396 (684)
+.+++.|+||||||++++++.+.+ + .+++.+..+.-.. ....|.. ...+..++...... .. ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~-a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLT-ASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCc-cccHHHHhhccCCccchhhhhccccC
Confidence 578899999999999999997665 3 2333332221110 0111211 12222333221110 00 1245
Q ss_pred CEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 397 gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.+|++||+..+... ....|++.+.
T Consensus 418 ~llIvDEaSMvd~~--------------~~~~Ll~~~~ 441 (720)
T TIGR01448 418 DLLIVDESSMMDTW--------------LALSLLAALP 441 (720)
T ss_pred CEEEEeccccCCHH--------------HHHHHHHhCC
Confidence 79999999999776 7777877664
No 349
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=95.98 E-value=0.017 Score=70.00 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=49.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchH------HHHHHHHhh--cchhhHhhcCCEEEEcc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVE------SILYKLLTV--SDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~------~~l~~l~~~--a~~~v~~a~~gVLfIDE 403 (684)
.++++||||+|||+.|.+.|+.++..++..|+++.. +++...... ..+...+.. ++.. ......||++||
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R-Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~-~~~~~~vil~de 436 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR-SKKELLNKLGNATSSHSIKGSKKKKGNRQS-LNSDHFLILMDE 436 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc-cccHHHhhhhccccccchhhhhcccccccc-cccceeEEEEec
Confidence 468999999999999999999999999999998775 332222110 011111100 0000 012345999999
Q ss_pred ccccch
Q 005667 404 VDKITK 409 (684)
Q Consensus 404 IDkL~~ 409 (684)
+|-+..
T Consensus 437 vD~~~~ 442 (871)
T KOG1968|consen 437 VDGMFG 442 (871)
T ss_pred cccccc
Confidence 999876
No 350
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.98 E-value=0.0064 Score=61.65 Aligned_cols=33 Identities=30% Similarity=0.639 Sum_probs=27.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.++++||||+|||++|+.||+.++.+.+ +..++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI--STGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--ECCcc
Confidence 4899999999999999999999986554 44444
No 351
>PF14516 AAA_35: AAA-like domain
Probab=95.95 E-value=0.082 Score=57.54 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=29.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
..+.+.||..+|||++...+.+.+ +...+.+|+..+
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 688899999999999998887666 567778887765
No 352
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.92 E-value=0.03 Score=57.23 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..-++|+||+|+|||++.+.++.
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 35788999999999999999964
No 353
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.91 E-value=0.038 Score=60.46 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+++.|.||||||.||-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 578999999999999999999887
No 354
>PRK04040 adenylate kinase; Provisional
Probab=95.91 E-value=0.008 Score=60.22 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..++++|+||||||++++.+++.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999983
No 355
>PTZ00301 uridine kinase; Provisional
Probab=95.89 E-value=0.029 Score=57.36 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.-|.+.|+||+|||++|+.|++.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 456799999999999999998776
No 356
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.89 E-value=0.014 Score=58.47 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~ 365 (684)
..++++||||+|||++|..++... +.+.+.++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 678899999999999999887544 45677777754
No 357
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.83 E-value=0.021 Score=58.50 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=25.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
..++++|+||+|||++|..++... +.+.+.++.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 788899999999999999996442 455555554
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=95.82 E-value=0.014 Score=50.14 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=18.2
Q ss_pred ceEEEEccCCCcHH-HHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKT-LLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT-~LAraIA~~l 354 (684)
..+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667999999999 5666666665
No 359
>PRK14527 adenylate kinase; Provisional
Probab=95.79 E-value=0.0074 Score=59.98 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=25.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..++++||||+|||++|+.+|+.++.+.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 67999999999999999999999876543
No 360
>PRK04182 cytidylate kinase; Provisional
Probab=95.79 E-value=0.0091 Score=57.79 Aligned_cols=29 Identities=41% Similarity=0.582 Sum_probs=26.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
.++|.|++|+|||++|+.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999987754
No 361
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.13 Score=57.51 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=27.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
+..++|+||+|+|||+++..||..+ +..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3789999999999999999998776 3344445553
No 362
>PRK08233 hypothetical protein; Provisional
Probab=95.75 E-value=0.013 Score=57.01 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC-CCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN-VPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~-~pfv~v~~ 363 (684)
.-+.+.|+||+||||+|+.|++.++ .+.+..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 5678899999999999999999985 44444444
No 363
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.72 E-value=0.11 Score=55.21 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=27.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh----C-CCEEEEeccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV----N-VPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l----~-~pfv~v~~s~ 365 (684)
+..++|+||+|+|||+++..+|..+ + .....+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4688999999999999999998765 2 4555555544
No 364
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.72 E-value=0.037 Score=52.75 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=18.6
Q ss_pred ceEEEEccCCCcHHH-HHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTL-LAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~-LAraIA~~l 354 (684)
.++++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 488999999999999 555555544
No 365
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.71 E-value=0.0097 Score=63.02 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-~~pfv~v~~s~l 366 (684)
.-++|.|+||||||++|+.|++.+ +.. .++...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~--~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAV--NVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCE--EEeccHH
Confidence 578899999999999999999998 544 4444333
No 366
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.71 E-value=0.033 Score=58.80 Aligned_cols=36 Identities=22% Similarity=0.441 Sum_probs=27.6
Q ss_pred CCCCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005667 320 GVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 320 ~~~~~~~~~p~~-~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
++++..+.+... .+-|+|++||||||++|.+.+...
T Consensus 28 avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 345555665554 555999999999999999998774
No 367
>PLN02674 adenylate kinase
Probab=95.70 E-value=0.011 Score=61.98 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
..++|.||||+||+++|+.||+.++.+ .+++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdl 65 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDM 65 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHH
Confidence 579999999999999999999999754 4555544
No 368
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.66 E-value=0.0095 Score=56.82 Aligned_cols=31 Identities=39% Similarity=0.550 Sum_probs=25.7
Q ss_pred EEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005667 335 LMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 335 L~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~ 367 (684)
+.||||+|||++|+.||+.++ ++.+++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHH
Confidence 579999999999999999986 4566765554
No 369
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.64 E-value=0.029 Score=56.99 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
..++++||||+|||++|..+|... +.+.+.++..
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 677899999999999999997644 5667777765
No 370
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.63 E-value=0.023 Score=62.61 Aligned_cols=25 Identities=36% Similarity=0.809 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.++.+.||.|||||++.++|...+.
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhc
Confidence 7889999999999999999988773
No 371
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.61 E-value=0.011 Score=49.41 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l 354 (684)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 372
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.094 Score=53.97 Aligned_cols=27 Identities=41% Similarity=0.490 Sum_probs=24.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.-|.+.|++|+|||++|+.|+..++..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456689999999999999999999865
No 373
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.60 E-value=0.058 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+||||++++|+..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5677999999999999999998875
No 374
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.59 E-value=0.012 Score=56.57 Aligned_cols=29 Identities=41% Similarity=0.622 Sum_probs=25.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
.+.+.|++|+|||++|+.+|+.++.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 47899999999999999999999887654
No 375
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.57 E-value=0.011 Score=58.57 Aligned_cols=29 Identities=38% Similarity=0.568 Sum_probs=25.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..++|.||+|+|||+|++.|+..++.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 47889999999999999999998765543
No 376
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.57 E-value=0.04 Score=55.20 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=28.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
..+.|+|++|+|||++|+.|+..+ +...+.++...+
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 688899999999999999999987 344566665443
No 377
>PRK14526 adenylate kinase; Provisional
Probab=95.56 E-value=0.013 Score=59.98 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=26.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.++|+||||+|||++|+.||+.++.++ +++.++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChH
Confidence 478999999999999999999987554 444444
No 378
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.066 Score=59.41 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=22.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
...++|+||+|+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3788999999999999999998754
No 379
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.54 E-value=0.033 Score=60.91 Aligned_cols=25 Identities=44% Similarity=0.761 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+++.||+|+|||++.+++.+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999988764
No 380
>PHA02624 large T antigen; Provisional
Probab=95.54 E-value=0.044 Score=63.80 Aligned_cols=87 Identities=24% Similarity=0.214 Sum_probs=53.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
+.+||+||||||||+++.+|.+.++...+.++++.-.-.-| +.- ....-+.+||++-.-.-.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~Fw--------L~p----------l~D~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFE--------LGC----------AIDQFMVVFEDVKGQPAD 493 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHH--------hhh----------hhhceEEEeeeccccccc
Confidence 68899999999999999999999977677777543210001 111 123358999998644332
Q ss_pred cccc--ccCCCCchHHHHHHHHHHHhCc-eeee
Q 005667 411 AESL--NISRDVSGEGVQQALLKMLEGT-VVNV 440 (684)
Q Consensus 411 r~~~--~~~~d~~~e~vq~~LL~~LEg~-~v~V 440 (684)
.... |.+-| -.+-|...|||. .|.+
T Consensus 494 ~~~Lp~G~~~d-----Nl~~lRn~LDG~V~v~l 521 (647)
T PHA02624 494 NKDLPSGQGMN-----NLDNLRDYLDGSVPVNL 521 (647)
T ss_pred cccCCcccccc-----hhhHHHhhcCCCCcccc
Confidence 1100 00111 236688888986 5544
No 381
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.53 E-value=0.15 Score=55.76 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.0
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 328 LEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 328 ~p~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.+++++.|+|+-|+|||.|.-..-..+.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCC
Confidence 3569999999999999999988877663
No 382
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.53 E-value=0.033 Score=58.27 Aligned_cols=68 Identities=31% Similarity=0.434 Sum_probs=41.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEec-ccccccc-----c----cccchHHHHHHHHhhcchhhHhhcCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIADA-TTLTQAG-----Y----VGEDVESILYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~---pfv~v~~-s~l~~~g-----y----vG~~~~~~l~~l~~~a~~~v~~a~~g 397 (684)
.++++.||+|+|||++++++...+.. .++.+.- .++.-.+ + -+.+....+...++. .+-
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~--------~pD 199 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQ--------DPD 199 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS----------S
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcC--------CCC
Confidence 79999999999999999999988833 3444432 2221100 0 122334444444443 456
Q ss_pred EEEEccccc
Q 005667 398 IVYIDEVDK 406 (684)
Q Consensus 398 VLfIDEIDk 406 (684)
+|+++||-.
T Consensus 200 ~iiigEiR~ 208 (270)
T PF00437_consen 200 VIIIGEIRD 208 (270)
T ss_dssp EEEESCE-S
T ss_pred cccccccCC
Confidence 999999976
No 383
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.0097 Score=59.00 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
.++++|.||||||++|+.++ .++.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 57899999999999999999 8877665444
No 384
>PRK06696 uridine kinase; Validated
Probab=95.49 E-value=0.017 Score=58.98 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=30.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~ 367 (684)
.-|.+.|+||+|||++|+.|++.+ +.+.+.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 678899999999999999999998 5566666665553
No 385
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.48 E-value=0.026 Score=61.39 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=30.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~ 367 (684)
..++|.|+||+|||+|++.+++.++.+++.--..++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 5789999999999999999999999887655544443
No 386
>PLN02199 shikimate kinase
Probab=95.47 E-value=0.015 Score=62.46 Aligned_cols=33 Identities=30% Similarity=0.528 Sum_probs=30.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
.+++|+|.+|+|||++++.+|+.++.+|+..|.
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 799999999999999999999999999875553
No 387
>PRK01184 hypothetical protein; Provisional
Probab=95.46 E-value=0.013 Score=57.52 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=24.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
.++|+|+||+||||+++ +++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 67899999999999998 778888776543
No 388
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.45 E-value=0.029 Score=62.07 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=55.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-----CEEE--Eeccc-----ccc-------ccccccchHHH---HHHHHhhcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV-----PFVI--ADATT-----LTQ-------AGYVGEDVESI---LYKLLTVSD 388 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~-----pfv~--v~~s~-----l~~-------~gyvG~~~~~~---l~~l~~~a~ 388 (684)
...+|+||||||||+|++.+++.+.. .++. +.-.. +.. .....+..... .......+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 57799999999999999999887732 1122 21111 100 00111111111 112334444
Q ss_pred hhhHhhcCCEEEEccccccchhcccc--------ccCCCCchHHHHHHHHHHHh
Q 005667 389 YNVAAAQQGIVYIDEVDKITKKAESL--------NISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 389 ~~v~~a~~gVLfIDEIDkL~~~r~~~--------~~~~d~~~e~vq~~LL~~LE 434 (684)
+..+....-+|++||+.++......- ..+.+. .+...+-++++
T Consensus 214 ~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~---s~~~~~~rl~~ 264 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDA---RALQRPKRLFG 264 (380)
T ss_pred HHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcCh---HHHhhhHHHHH
Confidence 44556677899999999987642210 012222 26677777776
No 389
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.45 E-value=0.052 Score=53.94 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=17.9
Q ss_pred EEEEccCCCcHHHHHHHHH
Q 005667 333 ILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA 351 (684)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 390
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.44 E-value=0.045 Score=58.14 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.+++|.||+|+|||++.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998874
No 391
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.42 E-value=0.051 Score=53.93 Aligned_cols=25 Identities=48% Similarity=0.724 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..++|.||+|+|||+++++++..+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 7899999999999999999998773
No 392
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.42 E-value=0.022 Score=63.17 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=27.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
.-++|.|+||+|||+++..+|..+ +.+.++++..
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 678899999999999999997665 3456666654
No 393
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.41 E-value=0.036 Score=56.17 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=58.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
..++|.|+-|+|||++.+.|+... +.-+..... + .+....+. ..-++.|||++.+.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~-------~-kd~~~~l~----------~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD-------D-KDFLEQLQ----------GKWIVELDELDGLSKK 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCccccCC-------C-cHHHHHHH----------HhHheeHHHHhhcchh
Confidence 577899999999999999996552 111111110 0 12222221 2248999999998755
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcc
Q 005667 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~ 470 (684)
-++.|-.++-.....+ +.+.++...--.+..+||.|+|..
T Consensus 111 --------------~~~~lK~~iT~~~~~~------R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 111 --------------DVEALKSFITRRTDTY------RPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred --------------hHHHHHHHhcccceee------ecCCcCcceeeceeEEEEeccCCc
Confidence 5566777775333322 233333334445668888888843
No 394
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.33 E-value=0.077 Score=60.21 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=28.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~ 365 (684)
..++|.|+||+|||+++..++... +.+.++++..+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 688899999999999999997655 45667777643
No 395
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.32 E-value=0.017 Score=59.26 Aligned_cols=35 Identities=40% Similarity=0.595 Sum_probs=27.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.++|+||+|||||.+|-++|+..+.|++..|.-..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 57899999999999999999999999999987544
No 396
>PHA01747 putative ATP-dependent protease
Probab=95.24 E-value=0.064 Score=59.01 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=47.3
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~ 408 (684)
+.-|++=.||.|||||++-+-+.... |+.. +....+.+ .++-..-....+.+ ...-+|.+|||..+.
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fs--p~~i-SGG~~TvA--------~LFyN~~t~~~GLV--g~~D~VaFDEVa~i~ 255 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELF--NFRY-YTEPPTYA--------NLVYDAKTNALGLV--FLSNGLIFDEIQTWK 255 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcC--Ccee-eCCCCchH--------HheEecCCCceeEE--eeccEEEEEcccccc
Confidence 34788888999999999998886533 2222 22221111 11111001111111 112479999999987
Q ss_pred hhccccccCCCCchHHHHHHHHHHHhC
Q 005667 409 KKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+.. ..+.+.|...|+.
T Consensus 256 f~~~----------kdiv~IMKdYMes 272 (425)
T PHA01747 256 DSNM----------RAINSTLSTGMEN 272 (425)
T ss_pred CCCH----------HHHHHHHHHHhhc
Confidence 5421 2278888888983
No 397
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.24 E-value=0.017 Score=56.51 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=23.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+..++|.|+||+|||++|+.+++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999999999885
No 398
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.23 E-value=0.05 Score=59.15 Aligned_cols=76 Identities=25% Similarity=0.218 Sum_probs=44.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccc---cccc-----------chHHHHHHHHhhcchhhHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGE-----------DVESILYKLLTVSDYNVAA 393 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~g---yvG~-----------~~~~~l~~l~~~a~~~v~~ 393 (684)
+.++++||||||||+||..++... +.+.+.+++..-..+. ..|. ..+..+..+ ...+..
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~----~~li~~ 131 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIA----ETLVRS 131 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHH----HHHhhc
Confidence 578899999999999988765443 5566777664321100 0011 111111111 112233
Q ss_pred hcCCEEEEccccccchh
Q 005667 394 AQQGIVYIDEVDKITKK 410 (684)
Q Consensus 394 a~~gVLfIDEIDkL~~~ 410 (684)
....+|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPK 148 (321)
T ss_pred cCCcEEEEcchhhhccc
Confidence 45679999999998764
No 399
>PLN02165 adenylate isopentenyltransferase
Probab=95.23 E-value=0.017 Score=63.02 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
..++|+||+|+|||+||..||+.++..++..|.
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 578999999999999999999999876655544
No 400
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.20 E-value=0.044 Score=58.17 Aligned_cols=77 Identities=29% Similarity=0.324 Sum_probs=40.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc--cccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT--QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~--~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDk 406 (684)
=++|+|-||+|||++|+.|++.+ +...+.++...+. ...|.....++..+..+..+-.. .-....||++|...-
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r-~ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVER-ALSKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHH-HHTT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHH-hhccCeEEEEeCCch
Confidence 47899999999999999998876 4566666654443 12243333455555544432111 113457999998876
Q ss_pred cch
Q 005667 407 ITK 409 (684)
Q Consensus 407 L~~ 409 (684)
+-.
T Consensus 82 iKg 84 (270)
T PF08433_consen 82 IKG 84 (270)
T ss_dssp SHH
T ss_pred HHH
Confidence 644
No 401
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.18 E-value=0.046 Score=58.86 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
-.+++.|++|||||++|+.||..++.+.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 6799999999999999999999998773
No 402
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.17 E-value=0.067 Score=54.65 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=18.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.+.||.|||||+||-+.|-.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 578899999999999999887544
No 403
>PRK14529 adenylate kinase; Provisional
Probab=95.17 E-value=0.017 Score=59.70 Aligned_cols=28 Identities=32% Similarity=0.625 Sum_probs=25.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
.++|.||||+|||++|+.||+.++.+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4789999999999999999999987654
No 404
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.16 E-value=0.016 Score=57.67 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l 354 (684)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999997666665544
No 405
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.16 E-value=0.055 Score=57.11 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=41.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEe-cccccccc--------ccccchHHHHHHHHhhcchhhHhhcCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIAD-ATTLTQAG--------YVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~---pfv~v~-~s~l~~~g--------yvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
..+++.||+|+|||++++++...+.. .++.+. ..++.-.+ ..|.+....++..++. .+-+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~--------~PD~ 152 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQ--------DPDI 152 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhcc--------CCCE
Confidence 57899999999999999999776632 244442 22221111 1122334444444443 4579
Q ss_pred EEEccccc
Q 005667 399 VYIDEVDK 406 (684)
Q Consensus 399 LfIDEIDk 406 (684)
|+++||..
T Consensus 153 i~vgEiR~ 160 (264)
T cd01129 153 IMVGEIRD 160 (264)
T ss_pred EEeccCCC
Confidence 99999866
No 406
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.16 E-value=0.04 Score=54.44 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=27.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s 364 (684)
.+|+.|+||+|||++|..++..++.+.+++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 589999999999999999999887776655543
No 407
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.13 E-value=0.027 Score=56.90 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l 354 (684)
+++.|+||+|||++.+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4688999999999999998774
No 408
>PLN02796 D-glycerate 3-kinase
Probab=95.12 E-value=0.66 Score=51.07 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
--+-|.|++|+|||+++++|+..+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5577999999999999999998884
No 409
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.12 E-value=0.029 Score=54.80 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~ 365 (684)
..++|.|+||+|||++|+.++..+ +..+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 688899999999999999999887 33455555543
No 410
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.09 E-value=0.06 Score=53.04 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=28.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
.-++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 688899999999999999999887 334566665544
No 411
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.09 E-value=0.022 Score=61.50 Aligned_cols=35 Identities=43% Similarity=0.589 Sum_probs=30.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~ 365 (684)
..++++||+|+|||++|..||+.++.+++..|.-.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q 39 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ 39 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc
Confidence 57889999999999999999999988887776643
No 412
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.08 E-value=0.039 Score=56.32 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999973
No 413
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.023 Score=55.56 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=30.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~ 367 (684)
+..+++.|++|+|||++++++++.++.+|+ ++.++.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~--dgDd~H 47 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFI--DGDDLH 47 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCccc--ccccCC
Confidence 368899999999999999999999998885 555554
No 414
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.05 E-value=0.025 Score=53.95 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
..++|.|+.|+|||++++.+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 578899999999999999999998753
No 415
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.04 E-value=0.018 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..++|.||||+|||+++++|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999998875
No 416
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.02 E-value=0.048 Score=58.73 Aligned_cols=24 Identities=46% Similarity=0.682 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.++++.||+|+|||++++++...+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC
Confidence 799999999999999999998877
No 417
>PRK10867 signal recognition particle protein; Provisional
Probab=95.02 E-value=0.28 Score=55.50 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=28.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~s~l 366 (684)
+..++++|++|+|||+++-.+|..+ +.....+++..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 5789999999999999888887655 445666666544
No 418
>PRK13764 ATPase; Provisional
Probab=95.01 E-value=0.042 Score=64.32 Aligned_cols=25 Identities=36% Similarity=0.699 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.++|++||||+||||++++++..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999998874
No 419
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.2 Score=52.59 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=56.0
Q ss_pred ceEEEEccCC-CcHHHHHHHHHHHhCC---------CEEEEecccc--ccccccccchHHHHHHHHhhcchhhHhhcCCE
Q 005667 331 SNILLMGPTG-SGKTLLAKTLARYVNV---------PFVIADATTL--TQAGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPpG-TGKT~LAraIA~~l~~---------pfv~v~~s~l--~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
+.+||.|..+ ++|..++..+++.+.. .+..+....- .....++- ..++++..........+..-|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~I---dqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISI---EQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccH---HHHHHHHHHHhhCcccCCcEE
Confidence 7899999998 9999999998887732 2333322110 00112232 233443332211112345679
Q ss_pred EEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 399 LfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
++||++|+|... ..++||+.+|+
T Consensus 93 iII~~ae~mt~~--------------AANALLKtLEE 115 (263)
T PRK06581 93 AIIYSAELMNLN--------------AANSCLKILED 115 (263)
T ss_pred EEEechHHhCHH--------------HHHHHHHhhcC
Confidence 999999999988 99999999993
No 420
>PLN02459 probable adenylate kinase
Probab=94.99 E-value=0.025 Score=59.73 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.+++|.||||+||+++|+.+|+.++.+. +++.++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdl 63 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDL 63 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHH
Confidence 4688999999999999999999997544 455444
No 421
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=0.14 Score=60.35 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=27.2
Q ss_pred CCCCccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 320 GVDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 320 ~~~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
-+++.++.++| ..+-|+||+|.|||++|..+-+..
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34455555555 677799999999999999987776
No 422
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.94 E-value=0.043 Score=55.10 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=19.1
Q ss_pred eEEEEccCCCcHHHHHHHHH
Q 005667 332 NILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA 351 (684)
.++|+||.|+|||++.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999997
No 423
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.94 E-value=0.087 Score=52.05 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=26.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s 364 (684)
+|++|++|+|||++|..++...+.+.+++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 58999999999999999988776677666543
No 424
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.93 E-value=0.1 Score=56.99 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.++++.|++|+|||++.+++...+.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 7999999999999999999988874
No 425
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.87 E-value=0.078 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..++|+||+|+|||++.+.++..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999998643
No 426
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.87 E-value=0.068 Score=64.38 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=49.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc------ccccccchHHHHHHHHhhcchhhHhhcCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYI 401 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfI 401 (684)
..++|.|+||||||++++++...+ +..++.+-.+.... .+.....+...+... .. .........+|+|
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~-~~--~~~~~~~~~llIv 445 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAW-AN--GRDLLSDKDVLVI 445 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhh-cc--CcccCCCCcEEEE
Confidence 567899999999999999997655 44444443332210 121112222211111 11 0001134579999
Q ss_pred ccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 402 DEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
||+-.+... ....|+....
T Consensus 446 DEasMv~~~--------------~~~~Ll~~~~ 464 (744)
T TIGR02768 446 DEAGMVGSR--------------QMARVLKEAE 464 (744)
T ss_pred ECcccCCHH--------------HHHHHHHHHH
Confidence 999998766 5666776543
No 427
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.86 E-value=0.032 Score=56.50 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=25.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
..+++.|.||+|||++|+.+|+.++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 6889999999999999999999987543
No 428
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.82 E-value=0.059 Score=51.40 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=24.2
Q ss_pred cccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 325 ~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++.+.+ ..+.|.||+|+|||+|+++++...
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344444 567799999999999999999876
No 429
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.81 E-value=0.031 Score=55.33 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=24.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
..+++.|++|+|||++++.++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 578899999999999999999998763
No 430
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.78 E-value=0.3 Score=59.41 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=24.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
+-+++.||+|.|||+++..+++..+ ++.-++.
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 5789999999999999999887665 5444433
No 431
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.73 E-value=0.76 Score=51.76 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHH--HHHHHHhCCCEEEEeccccc
Q 005667 331 SNILLMGPTGSGKTLLA--KTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LA--raIA~~l~~pfv~v~~s~l~ 367 (684)
.-+++.||.|+||+.|. +++...- ..+.+||..+.
T Consensus 18 TFIvV~GPrGSGK~elV~d~~L~~r~--~vL~IDC~~i~ 54 (431)
T PF10443_consen 18 TFIVVQGPRGSGKRELVMDHVLKDRK--NVLVIDCDQIV 54 (431)
T ss_pred eEEEEECCCCCCccHHHHHHHHhCCC--CEEEEEChHhh
Confidence 67789999999999999 6666543 37888888774
No 432
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.73 E-value=0.13 Score=56.10 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=45.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccc---ccccchHHH-------HHHHHhhcchhhHhhcCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDVESI-------LYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~g---yvG~~~~~~-------l~~l~~~a~~~v~~a~~g 397 (684)
+.+.++||||+|||+||-.++... +...+.++...-..+. ..|.+.... ..+++......+......
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 577799999999999998875433 5677777764321100 011110000 000111111123334568
Q ss_pred EEEEccccccchh
Q 005667 398 IVYIDEVDKITKK 410 (684)
Q Consensus 398 VLfIDEIDkL~~~ 410 (684)
+|+||-+..+.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998753
No 433
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.69 E-value=0.19 Score=53.54 Aligned_cols=105 Identities=20% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT 344 (684)
.-+.+++.+.+.+.+.|.....-.+..++..++.++.. .+...+-|+|.+++|||
T Consensus 153 ~Gtle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l~-------------------------~~~~~~hl~G~Ss~GKT 207 (286)
T PF06048_consen 153 KGTLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLLG-------------------------VEGFGFHLYGQSSSGKT 207 (286)
T ss_pred CcCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhC-------------------------CCceEEEEEeCCCCCHH
Confidence 44677788888888888888877777776655554211 12367779999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 345 ~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
+++++.+...+.|- .+. ..|-+-. ..+-..+. ......|+|||+....+.
T Consensus 208 t~~~~a~Sv~G~p~------~l~-~sw~~T~-n~le~~a~--------~~nd~~l~lDE~~~~~~~ 257 (286)
T PF06048_consen 208 TALQLAASVWGNPD------GLI-RSWNSTD-NGLERTAA--------AHNDLPLVLDELSQADPK 257 (286)
T ss_pred HHHHHhhhhCcCch------hhh-hcchhhH-HHHHHHHH--------HcCCcceEehhccccchh
Confidence 99999999888775 222 1232221 12212221 234578999999876554
No 434
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.69 E-value=0.02 Score=62.80 Aligned_cols=34 Identities=38% Similarity=0.742 Sum_probs=26.4
Q ss_pred CCCcccccccceE-EEEccCCCcHHHHHHHHHHHh
Q 005667 321 VDDDTVELEKSNI-LLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~p~~~v-LL~GPpGTGKT~LAraIA~~l 354 (684)
+++.++.+.+.-+ .|.||+||||||+.|.||..-
T Consensus 21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4445556666544 499999999999999999765
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.67 E-value=0.21 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5778999999999999999976
No 436
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.15 Score=60.36 Aligned_cols=37 Identities=32% Similarity=0.403 Sum_probs=31.6
Q ss_pred hcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 386 VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 386 ~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
..++.+.+|++|||||||+..|... .|+.+|+.|..+
T Consensus 216 i~pGaVHkAngGVLiIdei~lL~~~--------------~~w~~LKa~~~k 252 (647)
T COG1067 216 VKPGAVHKANGGVLIIDEIGLLAQP--------------LQWKLLKALLDK 252 (647)
T ss_pred ccCcccccccCcEEEEEhhhhhCcH--------------HHHHHHHHHHhc
Confidence 3467788999999999999999987 899999988744
No 437
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.59 E-value=0.032 Score=52.91 Aligned_cols=26 Identities=42% Similarity=0.675 Sum_probs=22.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++|+||+|+|||++++.+++.+...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 57899999999999999999875443
No 438
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.56 E-value=0.035 Score=55.36 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=23.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
...++|+||+|+|||+|++.+++.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36889999999999999999999875
No 439
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.55 E-value=0.032 Score=55.85 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+.-++|.||||+|||+|++.+.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3678999999999999999998765
No 440
>PRK13975 thymidylate kinase; Provisional
Probab=94.50 E-value=0.054 Score=53.56 Aligned_cols=27 Identities=44% Similarity=0.444 Sum_probs=24.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.-+.|.|++|+|||++|+.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468899999999999999999999753
No 441
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.50 E-value=0.18 Score=59.46 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.-.+|.|+||||||++++.+...+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 578899999999999988775443
No 442
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.49 E-value=0.031 Score=55.73 Aligned_cols=23 Identities=61% Similarity=0.860 Sum_probs=21.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
|-+.||||+|||++|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999996
No 443
>PRK13808 adenylate kinase; Provisional
Probab=94.49 E-value=0.035 Score=60.59 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=26.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.|+|+||||+|||++++.|++.++.+. ++..++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~--is~gdl 34 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQ--LSTGDM 34 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--ecccHH
Confidence 489999999999999999999997654 444433
No 444
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.49 E-value=0.094 Score=64.71 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=49.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---ccccccchHHHHHHHHhhc-chhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVS-DYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~---~gyvG~~~~~~l~~l~~~a-~~~v~~a~~gVLfIDE 403 (684)
..++|.|++|||||++.+++.+.+ +..++-+-.+.... .+-.|.. ...+..++... ..........||+|||
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~-a~TI~sll~~~~~~~~~l~~~~vlIVDE 441 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIA-SRTIASLEHGWGQGRDLLTSRDVLVIDE 441 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcc-hhhHHHHHhhhcccccccccCcEEEEEC
Confidence 356799999999999998876554 44444443332211 0011211 12222222110 0000112456999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+-.+... ....||+..+
T Consensus 442 ASMv~~~--------------~m~~LL~~a~ 458 (988)
T PRK13889 442 AGMVGTR--------------QLERVLSHAA 458 (988)
T ss_pred cccCCHH--------------HHHHHHHhhh
Confidence 9998766 6677777654
No 445
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.48 E-value=0.27 Score=58.92 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=29.5
Q ss_pred CCCCCCccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 318 TDGVDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 318 ~~~~~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
|..+.+.++++++ ..+.++|++|||||||+|.+.+..
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455666677766 457899999999999999998776
No 446
>PRK12338 hypothetical protein; Provisional
Probab=94.44 E-value=0.04 Score=59.82 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=25.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
..+++.|+||+|||++|+++|+.++...
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 6889999999999999999999998654
No 447
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.41 E-value=0.073 Score=58.43 Aligned_cols=25 Identities=52% Similarity=0.761 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.++|+.||+|+|||++++++...+.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccC
Confidence 7999999999999999999998874
No 448
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.40 E-value=0.037 Score=55.68 Aligned_cols=23 Identities=48% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.+.|+||+|||++|+.|++.+.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56889999999999999999983
No 449
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.39 E-value=0.028 Score=54.80 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
.-++|.||+|+|||++++.|++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46889999999999999999987644
No 450
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.39 E-value=0.15 Score=58.14 Aligned_cols=69 Identities=23% Similarity=0.338 Sum_probs=46.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE---EEe-cccccc--------ccccccchHHHHHHHHhhcchhhHhhcCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV---IAD-ATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv---~v~-~s~l~~--------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
+-+|++||+|+|||+...++.+.++.+.. .+. .-++.- ..-.|-+....++.+++. .|-|
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRq--------DPDv 330 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQ--------DPDV 330 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhcc--------CCCe
Confidence 67889999999999999999888865432 221 112211 113455556677777665 4469
Q ss_pred EEEcccccc
Q 005667 399 VYIDEVDKI 407 (684)
Q Consensus 399 LfIDEIDkL 407 (684)
|.+.||-..
T Consensus 331 ImVGEIRD~ 339 (500)
T COG2804 331 IMVGEIRDL 339 (500)
T ss_pred EEEeccCCH
Confidence 999999764
No 451
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.39 E-value=0.2 Score=50.92 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
..+++.|+||+|||++|..++... +.+.+.++..
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 788899999999999998886443 5566666654
No 452
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.39 E-value=0.053 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l 354 (684)
+.|.||+|+|||++++.|++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987
No 453
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.36 E-value=0.05 Score=53.94 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=26.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~l 366 (684)
+.+.|+||+|||++|+.|++.+. .+...++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 57899999999999999999873 44555555444
No 454
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.36 E-value=0.043 Score=54.15 Aligned_cols=32 Identities=41% Similarity=0.657 Sum_probs=25.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~ 367 (684)
+.|+|++|+|||++++.+++ ++.+++ ++..+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHH
Confidence 67999999999999999998 776654 554443
No 455
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.36 E-value=0.044 Score=54.96 Aligned_cols=38 Identities=32% Similarity=0.464 Sum_probs=30.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEeccccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV-NVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l-~~pfv~v~~s~l~ 367 (684)
|.-+++.|+||+|||+++..+...+ ...++.++..++.
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 4788899999999999999998887 6778889988775
No 456
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.34 E-value=0.35 Score=54.64 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=26.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l-----~~pfv~v~~s~ 365 (684)
...++|+||+|+|||+++..||..+ +.....+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 3688999999999999998887554 23455555544
No 457
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.33 E-value=0.029 Score=54.74 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=21.6
Q ss_pred EccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 336 MGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 336 ~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
+|+||+|||+++++++..++..++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~ 25 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLD 25 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEe
Confidence 4999999999999999999765543
No 458
>PLN02840 tRNA dimethylallyltransferase
Probab=94.33 E-value=0.047 Score=61.32 Aligned_cols=35 Identities=40% Similarity=0.595 Sum_probs=30.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~ 365 (684)
..++|.||+|+|||+||..||+.++.+++.+|.-.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~q 56 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQ 56 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccc
Confidence 56889999999999999999999998887777643
No 459
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.29 E-value=0.046 Score=58.58 Aligned_cols=34 Identities=38% Similarity=0.646 Sum_probs=29.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
++++||+|+|||++|..+|+.++..++.+|.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999988877776444
No 460
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.26 E-value=0.073 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5789999999999999999983
No 461
>PLN02348 phosphoribulokinase
Probab=94.26 E-value=0.34 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
.-|-+.|++|+|||++|+.|++.++.
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46669999999999999999999863
No 462
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.26 E-value=0.093 Score=50.21 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=24.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
.++||.+|+|+|||.++-.++..+..+++.+-
T Consensus 26 ~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~ 57 (184)
T PF04851_consen 26 RRVLLNAPTGSGKTIIALALILELARKVLIVA 57 (184)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCEEEEECCCCCcChhhhhhhhccccceeEec
Confidence 79999999999999999976555544555544
No 463
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.23 E-value=0.11 Score=60.89 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=29.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC----CEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~----pfv~v~~s~l 366 (684)
..++|+|+||+|||++|+++|+.++. ++..++...+
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 68899999999999999999999864 3455555444
No 464
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=94.23 E-value=0.1 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+.++|+||...|||++.|++|...
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 578999999999999999997554
No 465
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.22 E-value=0.091 Score=53.90 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.-+.|.||+|+|||+|++.|++.+.
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6778999999999999999998884
No 466
>PRK08356 hypothetical protein; Provisional
Probab=94.17 E-value=0.058 Score=53.89 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=25.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~ 365 (684)
..++|+||||+|||++|+.|++ .+.+ .+++++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCc--EEeCCC
Confidence 4688999999999999999964 5554 455554
No 467
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.19 Score=48.13 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=26.1
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+..+.+++ ..+.|.||+|+|||++.++|+..+.
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34455444 5777999999999999999998763
No 468
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.14 E-value=0.049 Score=63.25 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=30.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
..++|+|.+|+|||++++.+|+.++.+|+..|.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 688999999999999999999999999987775
No 469
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.13 E-value=0.035 Score=56.74 Aligned_cols=24 Identities=50% Similarity=0.647 Sum_probs=22.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
-++|+|+||+|||++|+-+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 578999999999999999999983
No 470
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.12 E-value=0.59 Score=52.91 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=29.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~s~l 366 (684)
+..++++|++|+|||++|..+|..+ +.....+++..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 5789999999999999998887764 345666666544
No 471
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.11 E-value=0.14 Score=56.91 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+|++||+|+|||++++++.+++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998877
No 472
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.08 E-value=0.13 Score=54.49 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=27.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~ 365 (684)
+..++|+||+|+|||+++..+|..+ +.....+++..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4788899999999999999998776 44455555543
No 473
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.08 E-value=0.093 Score=52.19 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.||+|+|||+|.+.|+..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 577799999999999999999876
No 474
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.01 E-value=0.071 Score=51.85 Aligned_cols=35 Identities=40% Similarity=0.519 Sum_probs=27.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
.+++.||||+|||++++.++..+ +.....+++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 46899999999999999998776 455667776543
No 475
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.01 E-value=0.15 Score=57.86 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=28.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCC-EEEEec
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVP-FVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~p-fv~v~~ 363 (684)
|..+++.|+||+|||++|..+|..++.. ++..|.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 4789999999999999999999999875 334443
No 476
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.00 E-value=0.049 Score=62.49 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=28.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
++.|+|++|+|||++++.+|+.++.+|+..|.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 68999999999999999999999999986663
No 477
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=93.96 E-value=0.062 Score=58.03 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=32.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.-++|+||++||||.+|-.+|+.++.+++.+|.-.+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 678999999999999999999999999998887544
No 478
>PRK06761 hypothetical protein; Provisional
Probab=93.94 E-value=0.057 Score=57.68 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
.-+++.|+||+||||+++.+++.+....+.++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 46889999999999999999999975544444
No 479
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=93.91 E-value=0.17 Score=58.99 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=13.8
Q ss_pred ceEEEEccCCCcHHH
Q 005667 331 SNILLMGPTGSGKTL 345 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~ 345 (684)
..+++.|++||||||
T Consensus 67 qvlIviGeTGsGKST 81 (674)
T KOG0922|consen 67 QVLIVIGETGSGKST 81 (674)
T ss_pred CEEEEEcCCCCCccc
Confidence 688899999999998
No 480
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.86 E-value=0.057 Score=54.35 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=27.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.+.++|++|+|||++++.+++.++.+++ ++..+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~ 35 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIY 35 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHH
Confidence 5789999999999999999998887765 55444
No 481
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.86 E-value=0.063 Score=55.07 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..+.|.||+|+|||++|+.||+.++.+++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46789999999999999999999987665
No 482
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.79 E-value=0.75 Score=48.22 Aligned_cols=25 Identities=40% Similarity=0.697 Sum_probs=21.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+-.+++.|++|+|||+++..+-..+
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 3688999999999999999886655
No 483
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.76 E-value=0.046 Score=57.00 Aligned_cols=34 Identities=35% Similarity=0.639 Sum_probs=25.9
Q ss_pred CCcccccccceEE-EEccCCCcHHHHHHHHHHHhC
Q 005667 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~p~~~vL-L~GPpGTGKT~LAraIA~~l~ 355 (684)
++..+++.+.-+| |+||+|||||||+++++....
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 3444555555555 999999999999999997763
No 484
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.74 E-value=0.074 Score=59.69 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.++|+.||||.|||++|+++|+.+
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHH
Confidence 699999999999999999999988
No 485
>PRK09354 recA recombinase A; Provisional
Probab=93.73 E-value=0.15 Score=56.12 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=44.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccc---cccchHHH-------HHHHHhhcchhhHhhcCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGY---VGEDVESI-------LYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gy---vG~~~~~~-------l~~l~~~a~~~v~~a~~g 397 (684)
+.++++||||||||+||-.++... +...+.++...-..+.| .|.+.... ..+.+......+......
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 577799999999999998774333 56677777654211000 11110000 001111111123334567
Q ss_pred EEEEccccccch
Q 005667 398 IVYIDEVDKITK 409 (684)
Q Consensus 398 VLfIDEIDkL~~ 409 (684)
+|+||=+-.+.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
No 486
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=93.73 E-value=1.7 Score=46.62 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
.-++|+|+.|+|||++.+.|...++...
T Consensus 77 ~~~~l~G~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhChhh
Confidence 6788999999999999999998887543
No 487
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.71 E-value=0.22 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...++|+||.|.|||++.+.++-.
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHH
Confidence 357889999999999999988644
No 488
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.70 E-value=0.52 Score=58.93 Aligned_cols=42 Identities=26% Similarity=0.515 Sum_probs=31.1
Q ss_pred ccccc-cceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccc
Q 005667 325 TVELE-KSNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (684)
Q Consensus 325 ~~~~p-~~~vLL~GPpGTGKT~LAraIA~~l~~--pfv~v~~s~l 366 (684)
++.++ ...+-|+||+||||+|+...|=+..+. --+.+|..++
T Consensus 1010 ~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 1010 SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI 1054 (1228)
T ss_pred cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccc
Confidence 33433 367889999999999999999888743 3566666655
No 489
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.69 E-value=0.098 Score=51.62 Aligned_cols=28 Identities=46% Similarity=0.701 Sum_probs=25.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
+.++|+||+|+|||+|++.|.+.....|
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 6899999999999999999998876555
No 490
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.65 E-value=0.083 Score=51.61 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l 354 (684)
+.|.|++|+|||++++.|++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998
No 491
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.64 E-value=0.046 Score=59.77 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=25.4
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++.++++.. .-+.|.||+||||||+.|.||...
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334445444 456799999999999999999766
No 492
>PRK07667 uridine kinase; Provisional
Probab=93.63 E-value=0.093 Score=52.50 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~ 365 (684)
.-|.+.|+||+|||++|+.|++.++ .+...++..+
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4677999999999999999999874 3555555544
No 493
>PTZ00202 tuzin; Provisional
Probab=93.57 E-value=0.38 Score=54.60 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=43.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
.+|.+.....|..++... .... +.-++|+||+|||||++++.++..++.+.
T Consensus 264 FVGReaEla~Lr~VL~~~----------------------------d~~~-privvLtG~~G~GKTTLlR~~~~~l~~~q 314 (550)
T PTZ00202 264 FVSREAEESWVRQVLRRL----------------------------DTAH-PRIVVFTGFRGCGKSSLCRSAVRKEGMPA 314 (550)
T ss_pred CCCcHHHHHHHHHHHhcc----------------------------CCCC-ceEEEEECCCCCCHHHHHHHHHhcCCceE
Confidence 489998888888777400 0011 25778999999999999999999888777
Q ss_pred EEEeccc
Q 005667 359 VIADATT 365 (684)
Q Consensus 359 v~v~~s~ 365 (684)
+.+|...
T Consensus 315 L~vNprg 321 (550)
T PTZ00202 315 VFVDVRG 321 (550)
T ss_pred EEECCCC
Confidence 7777653
No 494
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.57 E-value=0.049 Score=50.09 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
..++|.||+|+|||+|++++.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 678999999999999999986
No 495
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.55 E-value=0.066 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
+.-++|+||+|+|||+|++.+.+.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 367889999999999999999765
No 496
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.55 E-value=0.072 Score=59.63 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=26.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..|+|+|++|||||+|+++||+.++.+.+
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 78999999999999999999999887654
No 497
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.52 E-value=0.27 Score=59.76 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=14.9
Q ss_pred ceEEEEccCCCcHHHHH
Q 005667 331 SNILLMGPTGSGKTLLA 347 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LA 347 (684)
..++|.||||+||||-.
T Consensus 66 ~vvii~getGsGKTTql 82 (845)
T COG1643 66 QVVIIVGETGSGKTTQL 82 (845)
T ss_pred CEEEEeCCCCCChHHHH
Confidence 67889999999999954
No 498
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.51 E-value=0.19 Score=62.63 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=51.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc------cccccccchHHHHHHHHhhcchhhHhhcCCEEE
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT------QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~------~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLf 400 (684)
....++.|++|||||++.+++.+.+ +..++-+-.+.-. ..|.....+...+ +....+......+.||+
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~l---l~~~~~~~~l~~~~vlV 473 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWE---LRWNQGRDQLDNKTVFV 473 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHH---hhhccCccCCCCCcEEE
Confidence 4678899999999999999997655 4444433332211 0122222222211 11111111112357999
Q ss_pred EccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 401 IDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|||+..+... ....|++..+
T Consensus 474 IDEAsMv~~~--------------~m~~Ll~~~~ 493 (1102)
T PRK13826 474 LDEAGMVASR--------------QMALFVEAVT 493 (1102)
T ss_pred EECcccCCHH--------------HHHHHHHHHH
Confidence 9999998776 7777888775
No 499
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.49 E-value=0.14 Score=51.27 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=31.8
Q ss_pred EEEEccCCCcHHHHHHHH-HH-Hh--CCCEEEEecccccc---ccccccchH---------------HHHHHHHhhcchh
Q 005667 333 ILLMGPTGSGKTLLAKTL-AR-YV--NVPFVIADATTLTQ---AGYVGEDVE---------------SILYKLLTVSDYN 390 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraI-A~-~l--~~pfv~v~~s~l~~---~gyvG~~~~---------------~~l~~l~~~a~~~ 390 (684)
.+++|.||+|||+.|-.. .. .+ +.+++. |...+.. ..+.+.... ........
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRK----- 76 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTT-----
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcc-----
Confidence 589999999999987544 32 22 444443 5443321 111111110 11111110
Q ss_pred hHhhcCCEEEEccccccchhcc
Q 005667 391 VAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 391 v~~a~~gVLfIDEIDkL~~~r~ 412 (684)
...+++|+|||++.+.+.+.
T Consensus 77 --~~~~~liviDEa~~~~~~r~ 96 (193)
T PF05707_consen 77 --LPKGSLIVIDEAQNFFPSRS 96 (193)
T ss_dssp --SGTT-EEEETTGGGTSB---
T ss_pred --cCCCcEEEEECChhhcCCCc
Confidence 11578999999999988744
No 500
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.44 E-value=0.16 Score=59.50 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
...+|.|+||||||+++..+...+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 678899999999999888775544
Done!