Query 005667
Match_columns 684
No_of_seqs 437 out of 3521
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 5.6E-42 1.9E-46 367.8 23.0 343 265-634 3-346 (363)
2 1um8_A ATP-dependent CLP prote 100.0 8.7E-37 3E-41 328.7 28.6 356 263-634 7-362 (376)
3 1g41_A Heat shock protein HSLU 100.0 8.1E-35 2.8E-39 321.5 25.7 286 265-632 3-428 (444)
4 1ofh_A ATP-dependent HSL prote 99.9 1.4E-26 4.9E-31 239.3 24.2 286 265-632 3-294 (310)
5 1r6b_X CLPA protein; AAA+, N-t 99.9 1.4E-26 4.7E-31 270.9 24.0 273 255-610 432-719 (758)
6 3pxi_A Negative regulator of g 99.9 5.3E-26 1.8E-30 266.4 23.4 258 255-611 465-729 (758)
7 4fcw_A Chaperone protein CLPB; 99.9 1.9E-25 6.4E-30 232.0 23.5 260 269-610 9-282 (311)
8 1qvr_A CLPB protein; coiled co 99.9 1.4E-25 4.9E-30 266.2 21.0 275 254-610 531-823 (854)
9 4b4t_J 26S protease regulatory 99.9 1.3E-23 4.5E-28 229.2 18.5 221 278-609 149-372 (405)
10 4b4t_I 26S protease regulatory 99.9 8E-23 2.8E-27 224.1 19.0 218 279-609 184-406 (437)
11 4b4t_M 26S protease regulatory 99.9 1.2E-22 4.1E-27 224.0 18.4 221 279-609 183-405 (434)
12 4b4t_L 26S protease subunit RP 99.9 3.3E-22 1.1E-26 220.7 20.7 221 279-609 183-405 (437)
13 4b4t_K 26S protease regulatory 99.9 5.3E-22 1.8E-26 218.6 19.9 221 278-609 173-397 (428)
14 4b4t_H 26S protease regulatory 99.9 8.3E-22 2.8E-26 217.8 20.7 222 278-609 210-433 (467)
15 3syl_A Protein CBBX; photosynt 99.9 3E-21 1E-25 200.4 21.2 236 266-611 20-267 (309)
16 3m6a_A ATP-dependent protease 99.9 2.4E-21 8.1E-26 219.5 17.6 242 267-611 71-320 (543)
17 1ojl_A Transcriptional regulat 99.8 2E-21 6.7E-26 204.7 12.2 272 277-671 2-284 (304)
18 1xwi_A SKD1 protein; VPS4B, AA 99.8 5.1E-20 1.7E-24 195.3 20.5 221 279-611 14-235 (322)
19 3eie_A Vacuolar protein sortin 99.8 3.8E-20 1.3E-24 195.5 17.7 220 279-610 20-239 (322)
20 2bjv_A PSP operon transcriptio 99.8 9.8E-20 3.3E-24 186.0 17.3 221 279-606 8-240 (265)
21 2qp9_X Vacuolar protein sortin 99.8 1.4E-19 4.9E-24 194.3 17.8 221 278-610 52-272 (355)
22 3cf2_A TER ATPase, transitiona 99.8 2.3E-20 7.8E-25 219.2 7.6 223 279-611 479-703 (806)
23 3cf0_A Transitional endoplasmi 99.8 4.7E-19 1.6E-23 185.6 16.7 222 279-610 17-240 (301)
24 2zan_A Vacuolar protein sortin 99.8 6.2E-19 2.1E-23 194.9 17.3 221 278-610 135-356 (444)
25 3pfi_A Holliday junction ATP-d 99.8 7.1E-18 2.4E-22 177.7 23.3 205 279-607 31-235 (338)
26 3vfd_A Spastin; ATPase, microt 99.8 2.2E-18 7.6E-23 186.5 19.9 223 278-611 116-338 (389)
27 3d8b_A Fidgetin-like protein 1 99.8 2.9E-18 9.9E-23 184.0 20.3 223 278-611 85-307 (357)
28 3b9p_A CG5977-PA, isoform A; A 99.8 2.7E-18 9.3E-23 177.7 19.1 222 279-610 23-244 (297)
29 3cf2_A TER ATPase, transitiona 99.8 1.2E-18 4.3E-23 204.5 16.9 219 278-609 205-425 (806)
30 3dzd_A Transcriptional regulat 99.8 3.5E-19 1.2E-23 192.5 10.9 197 331-604 153-359 (368)
31 1ny5_A Transcriptional regulat 99.8 1.2E-18 4.1E-23 189.4 12.9 197 331-605 161-369 (387)
32 1lv7_A FTSH; alpha/beta domain 99.8 2.5E-17 8.7E-22 167.3 21.4 219 279-609 14-235 (257)
33 2ce7_A Cell division protein F 99.8 1.3E-17 4.4E-22 186.2 20.1 218 279-608 18-238 (476)
34 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.8E-17 9.7E-22 166.0 20.7 219 279-607 8-230 (262)
35 3h4m_A Proteasome-activating n 99.8 1.2E-17 4.1E-22 171.6 17.3 218 279-609 19-241 (285)
36 2dhr_A FTSH; AAA+ protein, hex 99.7 1.2E-16 4.2E-21 179.2 20.9 216 279-607 33-252 (499)
37 1hqc_A RUVB; extended AAA-ATPa 99.7 4.7E-16 1.6E-20 162.2 22.8 202 279-603 14-215 (324)
38 3uk6_A RUVB-like 2; hexameric 99.7 5.8E-17 2E-21 172.2 16.1 258 279-671 46-359 (368)
39 3hu3_A Transitional endoplasmi 99.7 6.9E-17 2.4E-21 180.9 16.8 219 278-611 205-427 (489)
40 1g8p_A Magnesium-chelatase 38 99.7 2.8E-16 9.6E-21 165.4 19.5 204 331-608 46-304 (350)
41 3pvs_A Replication-associated 99.7 1.4E-16 4.9E-21 176.4 16.2 191 279-605 28-221 (447)
42 3t15_A Ribulose bisphosphate c 99.7 1.1E-16 3.8E-21 167.3 14.4 159 330-551 36-196 (293)
43 1d2n_A N-ethylmaleimide-sensit 99.7 2E-16 6.9E-21 162.2 11.8 176 330-603 64-246 (272)
44 2r44_A Uncharacterized protein 99.7 7.8E-16 2.7E-20 162.0 15.6 230 269-608 19-279 (331)
45 2x8a_A Nuclear valosin-contain 99.7 1.6E-15 5.6E-20 157.4 17.4 224 279-611 12-238 (274)
46 3u61_B DNA polymerase accessor 99.6 2E-15 6.9E-20 158.2 17.7 191 279-603 28-220 (324)
47 1ixz_A ATP-dependent metallopr 99.6 1E-14 3.4E-19 147.9 19.3 217 279-609 18-239 (254)
48 2chg_A Replication factor C sm 99.6 1.2E-14 4E-19 140.7 18.7 186 279-604 19-209 (226)
49 3f9v_A Minichromosome maintena 99.6 1.2E-16 4E-21 183.0 5.2 256 270-607 288-568 (595)
50 1iy2_A ATP-dependent metallopr 99.6 1.1E-14 3.8E-19 150.1 17.8 219 278-608 41-262 (278)
51 2r62_A Cell division protease 99.6 2E-17 6.7E-22 168.8 -3.4 216 279-606 13-233 (268)
52 2c9o_A RUVB-like 1; hexameric 99.6 1.8E-14 6.2E-19 159.4 20.1 104 277-411 37-142 (456)
53 1l8q_A Chromosomal replication 99.6 1.4E-14 4.7E-19 152.2 15.5 172 331-605 38-214 (324)
54 1ypw_A Transitional endoplasmi 99.6 2.9E-17 9.9E-22 194.1 -6.3 224 278-612 478-704 (806)
55 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 9.5E-14 3.2E-18 155.9 21.2 229 269-609 14-269 (500)
56 3n70_A Transport activator; si 99.6 5.7E-15 1.9E-19 138.3 8.7 97 278-434 2-101 (145)
57 1iqp_A RFCS; clamp loader, ext 99.6 5.2E-14 1.8E-18 145.9 16.9 185 279-603 27-216 (327)
58 1njg_A DNA polymerase III subu 99.5 1.8E-13 6.3E-18 133.4 19.2 184 279-603 25-232 (250)
59 2chq_A Replication factor C sm 99.5 2.8E-14 9.7E-19 147.4 11.9 185 279-603 19-208 (319)
60 1sxj_D Activator 1 41 kDa subu 99.5 4.8E-14 1.6E-18 148.2 11.4 189 279-605 39-241 (353)
61 3bos_A Putative DNA replicatio 99.5 3.1E-13 1.1E-17 133.3 15.9 169 331-608 53-226 (242)
62 3te6_A Regulatory protein SIR3 99.5 2.4E-13 8.1E-18 144.5 16.0 220 279-609 22-289 (318)
63 1in4_A RUVB, holliday junction 99.5 2.1E-12 7.2E-17 137.1 23.3 208 275-607 24-231 (334)
64 1jr3_A DNA polymerase III subu 99.5 5.6E-13 1.9E-17 141.1 18.4 185 279-604 18-226 (373)
65 3k1j_A LON protease, ATP-depen 99.5 1.9E-13 6.5E-18 156.5 15.7 143 389-604 195-353 (604)
66 2qby_B CDC6 homolog 3, cell di 99.5 3.7E-13 1.3E-17 143.0 16.8 204 277-606 20-252 (384)
67 2v1u_A Cell division control p 99.5 1.6E-13 5.6E-18 145.0 13.8 214 277-607 19-257 (387)
68 1sxj_B Activator 1 37 kDa subu 99.5 2.9E-13 9.8E-18 140.1 15.2 186 279-604 23-214 (323)
69 2z4s_A Chromosomal replication 99.5 3.5E-13 1.2E-17 148.8 16.7 174 331-607 131-314 (440)
70 1fnn_A CDC6P, cell division co 99.5 1.2E-12 4.2E-17 138.9 20.1 211 278-608 18-256 (389)
71 1sxj_A Activator 1 95 kDa subu 99.5 1.3E-12 4.6E-17 146.7 21.5 210 279-603 41-256 (516)
72 3co5_A Putative two-component 99.5 1.1E-14 3.8E-19 136.1 2.9 95 279-434 6-100 (143)
73 1ypw_A Transitional endoplasmi 99.4 7.4E-13 2.5E-17 156.5 14.8 217 279-608 206-424 (806)
74 1jbk_A CLPB protein; beta barr 99.4 3.4E-13 1.2E-17 127.3 9.5 161 278-549 23-194 (195)
75 1sxj_E Activator 1 40 kDa subu 99.4 2E-12 6.8E-17 136.5 16.2 65 523-604 177-242 (354)
76 1sxj_C Activator 1 40 kDa subu 99.4 1.8E-12 6.1E-17 137.3 15.0 183 279-602 27-215 (340)
77 3pxg_A Negative regulator of g 99.4 2.4E-12 8.1E-17 143.2 14.1 172 275-584 179-360 (468)
78 1qvr_A CLPB protein; coiled co 99.4 6.6E-12 2.3E-16 149.2 17.5 189 275-585 169-368 (854)
79 2qby_A CDC6 homolog 1, cell di 99.4 1.1E-11 3.8E-16 130.7 17.0 211 278-607 21-253 (386)
80 1r6b_X CLPA protein; AAA+, N-t 99.3 8.2E-12 2.8E-16 146.1 17.2 210 274-604 184-407 (758)
81 1a5t_A Delta prime, HOLB; zinc 99.3 1.5E-11 5.2E-16 130.5 16.9 158 331-600 25-206 (334)
82 3f8t_A Predicted ATPase involv 99.3 1.8E-11 6E-16 135.8 16.4 236 270-606 207-463 (506)
83 2p65_A Hypothetical protein PF 99.3 3.4E-12 1.2E-16 120.6 9.0 116 278-434 23-149 (187)
84 2gno_A DNA polymerase III, gam 99.3 7.1E-12 2.4E-16 132.2 11.5 144 281-551 1-150 (305)
85 3pxi_A Negative regulator of g 99.3 6.4E-12 2.2E-16 147.2 10.7 173 275-585 179-361 (758)
86 1w5s_A Origin recognition comp 99.0 3.1E-09 1.1E-13 113.7 16.7 220 277-606 22-273 (412)
87 4akg_A Glutathione S-transfera 98.7 7.1E-08 2.4E-12 125.6 14.7 205 330-605 1267-1488(2695)
88 2qen_A Walker-type ATPase; unk 98.7 8E-07 2.7E-11 92.3 19.1 51 279-365 14-64 (350)
89 3ec2_A DNA replication protein 98.6 6.7E-08 2.3E-12 92.5 8.7 82 331-434 39-127 (180)
90 2w58_A DNAI, primosome compone 98.4 2.6E-07 8.8E-12 89.8 6.5 37 331-367 55-94 (202)
91 2fna_A Conserved hypothetical 98.4 7.8E-06 2.7E-10 84.8 17.9 35 331-365 31-65 (357)
92 1jr3_D DNA polymerase III, del 98.3 1.8E-06 6.2E-11 91.1 11.4 167 331-604 19-190 (343)
93 2kjq_A DNAA-related protein; s 98.3 5.9E-07 2E-11 84.7 6.9 69 331-434 37-108 (149)
94 4akg_A Glutathione S-transfera 98.2 1.6E-05 5.5E-10 103.9 19.2 67 331-410 646-712 (2695)
95 3cmw_A Protein RECA, recombina 98.2 3.7E-06 1.3E-10 105.6 12.5 100 331-435 1083-1203(1706)
96 1u0j_A DNA replication protein 98.2 5.8E-06 2E-10 85.7 10.2 25 331-355 105-129 (267)
97 2qgz_A Helicase loader, putati 98.1 5.3E-07 1.8E-11 94.8 1.8 37 331-367 153-193 (308)
98 3vkg_A Dynein heavy chain, cyt 98.1 5.2E-06 1.8E-10 109.3 10.9 152 330-553 1304-1469(3245)
99 1tue_A Replication protein E1; 97.9 1E-05 3.6E-10 80.9 5.4 77 331-440 59-135 (212)
100 2vhj_A Ntpase P4, P4; non- hyd 97.7 2.8E-05 9.6E-10 82.7 5.6 72 331-410 124-197 (331)
101 2r2a_A Uncharacterized protein 97.6 4.4E-05 1.5E-09 75.6 5.8 74 331-410 6-102 (199)
102 3vkg_A Dynein heavy chain, cyt 97.5 0.0012 4.1E-08 87.4 18.1 67 331-410 605-671 (3245)
103 3cmu_A Protein RECA, recombina 97.4 0.00023 7.8E-09 90.8 8.7 102 329-434 1426-1547(2050)
104 1qzm_A ATP-dependent protease 97.2 0.0011 3.7E-08 58.3 8.4 71 538-612 1-71 (94)
105 1qhx_A CPT, protein (chloramph 97.2 0.00026 9E-09 66.7 4.5 35 331-365 4-38 (178)
106 3trf_A Shikimate kinase, SK; a 97.1 0.00023 7.8E-09 67.7 3.8 32 331-362 6-37 (185)
107 1ye8_A Protein THEP1, hypothet 97.1 0.001 3.4E-08 64.3 8.4 27 332-358 2-28 (178)
108 3upu_A ATP-dependent DNA helic 97.1 0.0019 6.5E-08 71.1 10.7 24 331-354 46-69 (459)
109 3vaa_A Shikimate kinase, SK; s 97.0 0.00043 1.5E-08 67.2 3.9 32 331-362 26-57 (199)
110 3kb2_A SPBC2 prophage-derived 96.9 0.00057 1.9E-08 63.6 4.1 31 332-362 3-33 (173)
111 2orw_A Thymidine kinase; TMTK, 96.9 0.0014 4.8E-08 63.6 6.7 24 331-354 4-27 (184)
112 2iyv_A Shikimate kinase, SK; t 96.8 0.00058 2E-08 64.9 3.6 32 331-362 3-34 (184)
113 1zuh_A Shikimate kinase; alpha 96.8 0.00062 2.1E-08 63.8 3.7 31 331-361 8-38 (168)
114 1via_A Shikimate kinase; struc 96.8 0.00058 2E-08 64.6 3.1 30 331-360 5-34 (175)
115 2ehv_A Hypothetical protein PH 96.8 0.003 1E-07 62.3 8.3 33 331-363 31-67 (251)
116 2rhm_A Putative kinase; P-loop 96.8 0.00075 2.6E-08 64.2 3.8 31 331-361 6-36 (193)
117 3iij_A Coilin-interacting nucl 96.8 0.00068 2.3E-08 64.3 3.4 30 331-360 12-41 (180)
118 1kag_A SKI, shikimate kinase I 96.7 0.0012 4E-08 61.9 4.3 29 331-359 5-33 (173)
119 2cdn_A Adenylate kinase; phosp 96.7 0.0012 4E-08 63.9 4.4 31 331-361 21-51 (201)
120 1tev_A UMP-CMP kinase; ploop, 96.6 0.001 3.4E-08 63.1 3.4 29 331-359 4-32 (196)
121 2fz4_A DNA repair protein RAD2 96.6 0.0063 2.2E-07 61.0 9.5 34 331-364 109-142 (237)
122 1y63_A LMAJ004144AAA protein; 96.6 0.00092 3.2E-08 64.1 3.2 30 331-360 11-41 (184)
123 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.7E-08 63.2 3.5 31 331-361 10-40 (196)
124 2ze6_A Isopentenyl transferase 96.6 0.0013 4.5E-08 66.8 4.2 32 332-363 3-34 (253)
125 1zp6_A Hypothetical protein AT 96.5 0.0013 4.3E-08 62.7 3.6 36 331-366 10-45 (191)
126 3t61_A Gluconokinase; PSI-biol 96.5 0.0015 5.2E-08 63.1 4.1 30 331-360 19-48 (202)
127 1e6c_A Shikimate kinase; phosp 96.5 0.0012 4E-08 61.8 3.1 30 331-360 3-32 (173)
128 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0062 2.1E-07 59.0 8.4 33 331-363 24-59 (235)
129 1aky_A Adenylate kinase; ATP:A 96.5 0.0013 4.5E-08 64.6 3.6 31 331-361 5-35 (220)
130 3lw7_A Adenylate kinase relate 96.5 0.0013 4.3E-08 60.8 3.2 29 331-360 2-30 (179)
131 2b8t_A Thymidine kinase; deoxy 96.5 0.017 5.7E-07 58.1 11.5 32 331-362 13-47 (223)
132 2bwj_A Adenylate kinase 5; pho 96.5 0.0013 4.4E-08 62.9 3.1 29 331-359 13-41 (199)
133 2pt5_A Shikimate kinase, SK; a 96.4 0.0016 5.6E-08 60.6 3.7 31 332-362 2-32 (168)
134 3cm0_A Adenylate kinase; ATP-b 96.4 0.0019 6.5E-08 61.2 4.0 29 331-359 5-33 (186)
135 3dl0_A Adenylate kinase; phosp 96.4 0.0016 5.5E-08 63.5 3.6 30 332-361 2-31 (216)
136 2vli_A Antibiotic resistance p 96.4 0.0015 5.3E-08 61.5 3.3 29 331-359 6-34 (183)
137 1qf9_A UMP/CMP kinase, protein 96.4 0.0016 5.5E-08 61.6 3.3 31 331-361 7-37 (194)
138 2cvh_A DNA repair and recombin 96.4 0.016 5.5E-07 55.9 10.5 35 331-365 21-55 (220)
139 3hr8_A Protein RECA; alpha and 96.4 0.0064 2.2E-07 65.3 8.3 75 331-409 62-153 (356)
140 3fb4_A Adenylate kinase; psych 96.4 0.0018 6.1E-08 63.1 3.7 30 332-361 2-31 (216)
141 3e1s_A Exodeoxyribonuclease V, 96.3 0.0061 2.1E-07 69.4 8.4 89 331-434 205-304 (574)
142 1kht_A Adenylate kinase; phosp 96.3 0.0021 7.2E-08 60.7 3.8 25 331-355 4-28 (192)
143 1ly1_A Polynucleotide kinase; 96.3 0.0019 6.4E-08 60.5 3.3 25 331-355 3-28 (181)
144 1knq_A Gluconate kinase; ALFA/ 96.3 0.0021 7.2E-08 60.5 3.7 34 331-366 9-42 (175)
145 1ak2_A Adenylate kinase isoenz 96.3 0.0019 6.6E-08 64.2 3.5 31 331-361 17-47 (233)
146 1zd8_A GTP:AMP phosphotransfer 96.3 0.0018 6.1E-08 64.0 3.2 31 331-361 8-38 (227)
147 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0074 2.5E-07 61.2 7.8 36 331-366 5-43 (260)
148 3kl4_A SRP54, signal recogniti 96.3 0.02 7E-07 63.0 11.8 36 329-364 96-134 (433)
149 2zr9_A Protein RECA, recombina 96.2 0.0093 3.2E-07 63.7 8.7 80 330-409 61-153 (349)
150 1ukz_A Uridylate kinase; trans 96.2 0.0022 7.5E-08 61.9 3.4 31 331-361 16-46 (203)
151 2p5t_B PEZT; postsegregational 96.2 0.0025 8.6E-08 64.4 3.9 38 330-367 32-69 (253)
152 3be4_A Adenylate kinase; malar 96.2 0.0023 7.8E-08 63.0 3.4 31 331-361 6-36 (217)
153 3tlx_A Adenylate kinase 2; str 96.2 0.0023 7.8E-08 64.5 3.5 31 331-361 30-60 (243)
154 4eun_A Thermoresistant glucoki 96.2 0.0034 1.2E-07 60.8 4.6 35 330-366 29-63 (200)
155 2r8r_A Sensor protein; KDPD, P 96.2 0.026 8.8E-07 57.1 11.1 33 331-363 7-42 (228)
156 1n0w_A DNA repair protein RAD5 96.2 0.0065 2.2E-07 59.7 6.6 35 331-365 25-68 (243)
157 1zak_A Adenylate kinase; ATP:A 96.2 0.0016 5.4E-08 64.0 2.2 29 331-359 6-34 (222)
158 2pez_A Bifunctional 3'-phospho 96.1 0.0049 1.7E-07 58.3 5.3 36 331-366 6-44 (179)
159 1e4v_A Adenylate kinase; trans 96.1 0.0028 9.7E-08 61.9 3.6 30 332-361 2-31 (214)
160 2pbr_A DTMP kinase, thymidylat 96.1 0.0048 1.6E-07 58.4 4.9 31 332-362 2-35 (195)
161 3sr0_A Adenylate kinase; phosp 96.1 0.0038 1.3E-07 61.8 4.3 33 332-366 2-34 (206)
162 1gvn_B Zeta; postsegregational 96.1 0.0039 1.3E-07 64.7 4.4 36 331-366 34-69 (287)
163 3umf_A Adenylate kinase; rossm 96.0 0.0042 1.4E-07 62.2 4.3 34 331-366 30-63 (217)
164 2jaq_A Deoxyguanosine kinase; 96.0 0.0042 1.4E-07 59.3 4.1 28 332-359 2-29 (205)
165 3crm_A TRNA delta(2)-isopenten 96.0 0.0038 1.3E-07 66.3 4.1 34 331-364 6-39 (323)
166 1cke_A CK, MSSA, protein (cyti 96.0 0.0047 1.6E-07 60.4 4.5 29 331-359 6-34 (227)
167 1svm_A Large T antigen; AAA+ f 96.0 0.0042 1.4E-07 67.3 4.4 61 331-409 170-230 (377)
168 3uie_A Adenylyl-sulfate kinase 95.9 0.0057 2E-07 59.2 4.5 36 331-366 26-64 (200)
169 1nks_A Adenylate kinase; therm 95.9 0.0031 1.1E-07 59.5 2.6 24 332-355 3-26 (194)
170 2v54_A DTMP kinase, thymidylat 95.8 0.0056 1.9E-07 58.6 4.1 32 331-362 5-37 (204)
171 2if2_A Dephospho-COA kinase; a 95.8 0.004 1.4E-07 60.0 3.1 30 332-362 3-32 (204)
172 2z0h_A DTMP kinase, thymidylat 95.8 0.0072 2.5E-07 57.5 4.8 31 332-362 2-35 (197)
173 1uf9_A TT1252 protein; P-loop, 95.8 0.0048 1.7E-07 59.0 3.5 29 331-360 9-37 (203)
174 2xb4_A Adenylate kinase; ATP-b 95.7 0.0061 2.1E-07 60.3 4.1 29 332-360 2-30 (223)
175 3ake_A Cytidylate kinase; CMP 95.7 0.0087 3E-07 57.4 4.9 31 332-362 4-34 (208)
176 3jvv_A Twitching mobility prot 95.7 0.02 6.7E-07 61.5 8.1 24 331-354 124-147 (356)
177 3dm5_A SRP54, signal recogniti 95.7 0.034 1.2E-06 61.4 10.1 38 329-366 99-139 (443)
178 3cmu_A Protein RECA, recombina 95.7 0.021 7E-07 73.3 9.4 80 329-411 1080-1175(2050)
179 3a8t_A Adenylate isopentenyltr 95.7 0.0044 1.5E-07 66.2 2.9 34 331-364 41-74 (339)
180 2wwf_A Thymidilate kinase, put 95.6 0.0036 1.2E-07 60.4 1.9 31 331-361 11-41 (212)
181 1u94_A RECA protein, recombina 95.6 0.032 1.1E-06 59.8 9.5 77 330-409 63-155 (356)
182 2plr_A DTMP kinase, probable t 95.6 0.007 2.4E-07 58.1 3.9 27 331-357 5-31 (213)
183 1jjv_A Dephospho-COA kinase; P 95.6 0.0053 1.8E-07 59.3 2.9 29 331-360 3-31 (206)
184 2bbw_A Adenylate kinase 4, AK4 95.6 0.0087 3E-07 59.8 4.5 28 331-358 28-55 (246)
185 3io5_A Recombination and repai 95.5 0.016 5.5E-07 61.5 6.5 78 330-409 28-125 (333)
186 3nwj_A ATSK2; P loop, shikimat 95.5 0.0081 2.8E-07 61.3 4.1 31 331-361 49-79 (250)
187 1nn5_A Similar to deoxythymidy 95.5 0.0045 1.5E-07 59.7 1.9 27 331-357 10-36 (215)
188 3r20_A Cytidylate kinase; stru 95.4 0.011 3.6E-07 60.0 4.4 29 331-359 10-38 (233)
189 2yvu_A Probable adenylyl-sulfa 95.4 0.017 5.8E-07 54.9 5.5 36 330-365 13-51 (186)
190 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.036 1.2E-06 58.6 8.6 68 331-406 172-251 (330)
191 3cmw_A Protein RECA, recombina 95.3 0.019 6.4E-07 72.7 7.3 81 329-409 731-824 (1706)
192 2z43_A DNA repair and recombin 95.3 0.023 7.9E-07 59.6 6.9 35 331-365 108-151 (324)
193 2qor_A Guanylate kinase; phosp 95.3 0.0095 3.2E-07 57.8 3.6 25 331-355 13-37 (204)
194 3foz_A TRNA delta(2)-isopenten 95.3 0.0097 3.3E-07 62.9 3.9 36 331-366 11-46 (316)
195 2grj_A Dephospho-COA kinase; T 95.3 0.0088 3E-07 58.5 3.3 30 331-360 13-42 (192)
196 2ga8_A Hypothetical 39.9 kDa p 95.2 0.0078 2.7E-07 64.7 3.0 30 331-360 25-54 (359)
197 4e22_A Cytidylate kinase; P-lo 95.2 0.014 4.8E-07 59.0 4.6 29 331-359 28-56 (252)
198 1uj2_A Uridine-cytidine kinase 95.1 0.018 6E-07 57.9 5.1 37 331-367 23-67 (252)
199 1vht_A Dephospho-COA kinase; s 95.1 0.011 3.6E-07 57.8 3.4 30 331-361 5-34 (218)
200 2h92_A Cytidylate kinase; ross 95.1 0.01 3.6E-07 57.7 3.3 30 331-360 4-33 (219)
201 1q3t_A Cytidylate kinase; nucl 95.1 0.016 5.5E-07 57.6 4.6 29 331-359 17-45 (236)
202 1pzn_A RAD51, DNA repair and r 95.1 0.028 9.4E-07 59.9 6.7 35 331-365 132-175 (349)
203 1kgd_A CASK, peripheral plasma 95.1 0.013 4.6E-07 55.8 3.8 25 331-355 6-30 (180)
204 1xp8_A RECA protein, recombina 95.1 0.026 9.1E-07 60.7 6.5 76 330-409 74-166 (366)
205 2qt1_A Nicotinamide riboside k 95.0 0.0084 2.9E-07 58.1 2.2 34 331-366 22-56 (207)
206 2j41_A Guanylate kinase; GMP, 95.0 0.012 4.3E-07 56.2 3.3 24 331-354 7-30 (207)
207 3exa_A TRNA delta(2)-isopenten 94.9 0.013 4.5E-07 62.0 3.6 34 331-364 4-37 (322)
208 1ltq_A Polynucleotide kinase; 94.9 0.0093 3.2E-07 61.1 2.3 29 331-359 3-32 (301)
209 3tr0_A Guanylate kinase, GMP k 94.9 0.016 5.4E-07 55.5 3.8 24 331-354 8-31 (205)
210 2qmh_A HPR kinase/phosphorylas 94.9 0.01 3.4E-07 59.1 2.3 40 326-366 30-69 (205)
211 3tau_A Guanylate kinase, GMP k 94.8 0.014 5E-07 56.9 3.4 26 330-355 8-33 (208)
212 3lda_A DNA repair protein RAD5 94.8 0.068 2.3E-06 58.2 9.0 35 331-365 179-222 (400)
213 2bdt_A BH3686; alpha-beta prot 94.8 0.019 6.4E-07 54.6 4.0 34 331-365 3-36 (189)
214 1m7g_A Adenylylsulfate kinase; 94.8 0.021 7.1E-07 55.7 4.4 36 331-366 26-65 (211)
215 3d3q_A TRNA delta(2)-isopenten 94.8 0.014 4.7E-07 62.4 3.3 33 331-363 8-40 (340)
216 3eph_A TRNA isopentenyltransfe 94.7 0.017 5.9E-07 63.1 3.7 33 331-363 3-35 (409)
217 1w36_D RECD, exodeoxyribonucle 94.6 0.064 2.2E-06 61.3 8.6 24 331-354 165-188 (608)
218 3asz_A Uridine kinase; cytidin 94.6 0.015 5.1E-07 56.2 2.8 25 331-355 7-31 (211)
219 1g5t_A COB(I)alamin adenosyltr 94.5 0.14 4.9E-06 50.4 9.7 32 330-361 28-62 (196)
220 3c8u_A Fructokinase; YP_612366 94.5 0.02 6.8E-07 55.8 3.4 25 331-355 23-47 (208)
221 3a00_A Guanylate kinase, GMP k 94.5 0.02 6.9E-07 54.7 3.5 25 331-355 2-26 (186)
222 1v5w_A DMC1, meiotic recombina 94.5 0.049 1.7E-06 57.7 6.7 35 331-365 123-166 (343)
223 3fdi_A Uncharacterized protein 94.4 0.029 9.9E-07 55.0 4.5 29 331-359 7-35 (201)
224 1w4r_A Thymidine kinase; type 94.4 0.15 5E-06 50.4 9.5 33 331-363 21-56 (195)
225 1lvg_A Guanylate kinase, GMP k 94.3 0.023 7.8E-07 55.2 3.5 25 331-355 5-29 (198)
226 2f6r_A COA synthase, bifunctio 94.3 0.02 6.8E-07 59.0 3.2 30 330-360 75-104 (281)
227 1ex7_A Guanylate kinase; subst 94.3 0.029 9.8E-07 54.8 4.0 28 331-358 2-29 (186)
228 3zvl_A Bifunctional polynucleo 94.2 0.017 5.9E-07 62.9 2.4 35 330-366 258-292 (416)
229 1xx6_A Thymidine kinase; NESG, 94.1 0.13 4.5E-06 50.2 8.5 31 331-361 9-42 (191)
230 1rz3_A Hypothetical protein rb 94.1 0.054 1.8E-06 52.4 5.5 33 331-363 23-58 (201)
231 2v3c_C SRP54, signal recogniti 94.0 0.067 2.3E-06 58.8 6.8 35 330-364 99-136 (432)
232 2i1q_A DNA repair and recombin 93.9 0.058 2E-06 56.2 5.8 24 330-353 98-121 (322)
233 3b6e_A Interferon-induced heli 93.9 0.056 1.9E-06 51.6 5.2 23 331-353 49-71 (216)
234 1znw_A Guanylate kinase, GMP k 93.9 0.036 1.2E-06 53.9 3.8 25 331-355 21-45 (207)
235 2jeo_A Uridine-cytidine kinase 93.8 0.037 1.3E-06 55.3 3.9 32 325-356 19-51 (245)
236 4a74_A DNA repair and recombin 93.8 0.036 1.2E-06 53.7 3.7 24 331-354 26-49 (231)
237 2dr3_A UPF0273 protein PH0284; 93.7 0.064 2.2E-06 52.5 5.4 34 331-364 24-60 (247)
238 2axn_A 6-phosphofructo-2-kinas 93.7 0.073 2.5E-06 59.8 6.5 37 330-366 35-74 (520)
239 1gtv_A TMK, thymidylate kinase 93.7 0.021 7.1E-07 55.1 1.7 24 332-355 2-25 (214)
240 1tf7_A KAIC; homohexamer, hexa 93.6 0.16 5.4E-06 56.8 9.1 35 331-365 40-78 (525)
241 3ney_A 55 kDa erythrocyte memb 93.6 0.055 1.9E-06 53.4 4.6 26 330-355 19-44 (197)
242 1z6g_A Guanylate kinase; struc 93.6 0.04 1.4E-06 54.3 3.6 30 325-354 17-47 (218)
243 2r6a_A DNAB helicase, replicat 93.6 0.2 6.7E-06 55.0 9.5 33 331-363 204-240 (454)
244 1x6v_B Bifunctional 3'-phospho 93.5 0.053 1.8E-06 62.4 5.0 36 331-366 53-91 (630)
245 2j37_W Signal recognition part 93.5 0.38 1.3E-05 53.9 11.7 34 330-363 101-137 (504)
246 1zu4_A FTSY; GTPase, signal re 93.3 0.17 5.8E-06 53.3 8.1 35 330-364 105-142 (320)
247 1htw_A HI0065; nucleotide-bind 93.3 0.053 1.8E-06 51.3 3.8 24 331-354 34-57 (158)
248 4gp7_A Metallophosphoesterase; 93.2 0.045 1.6E-06 51.7 3.3 20 331-350 10-29 (171)
249 3gmt_A Adenylate kinase; ssgci 93.1 0.056 1.9E-06 54.6 3.8 29 332-360 10-38 (230)
250 3kta_A Chromosome segregation 93.0 0.068 2.3E-06 50.3 4.1 30 326-355 22-51 (182)
251 1s96_A Guanylate kinase, GMP k 92.9 0.06 2.1E-06 53.6 3.8 25 331-355 17-41 (219)
252 2eyu_A Twitching motility prot 92.9 0.058 2E-06 55.1 3.7 24 331-354 26-49 (261)
253 3hdt_A Putative kinase; struct 92.9 0.066 2.3E-06 53.6 4.1 30 331-360 15-44 (223)
254 4eaq_A DTMP kinase, thymidylat 92.9 0.064 2.2E-06 53.5 3.9 25 331-355 27-51 (229)
255 2j9r_A Thymidine kinase; TK1, 92.9 0.37 1.3E-05 48.1 9.4 32 331-362 29-63 (214)
256 1sky_E F1-ATPase, F1-ATP synth 92.8 0.18 6.1E-06 56.1 7.6 24 331-354 152-175 (473)
257 1odf_A YGR205W, hypothetical 3 92.7 0.14 4.7E-06 53.2 6.4 25 331-355 32-56 (290)
258 3lnc_A Guanylate kinase, GMP k 92.7 0.041 1.4E-06 54.2 2.3 25 331-355 28-53 (231)
259 2zts_A Putative uncharacterize 92.3 0.15 5E-06 49.9 5.6 33 331-363 31-67 (251)
260 2v9p_A Replication protein E1; 92.3 0.079 2.7E-06 55.7 3.7 24 331-354 127-150 (305)
261 1t6n_A Probable ATP-dependent 92.2 0.51 1.8E-05 45.5 9.3 22 331-352 52-73 (220)
262 2i3b_A HCR-ntpase, human cance 92.1 0.08 2.7E-06 51.5 3.4 24 331-354 2-25 (189)
263 1a7j_A Phosphoribulokinase; tr 92.1 0.064 2.2E-06 55.6 2.9 36 331-366 6-44 (290)
264 3sfz_A APAF-1, apoptotic pepti 92.1 0.36 1.2E-05 58.2 9.8 45 279-353 126-170 (1249)
265 3p32_A Probable GTPase RV1496/ 92.1 0.18 6.3E-06 53.4 6.5 33 331-363 80-115 (355)
266 3aez_A Pantothenate kinase; tr 92.1 0.084 2.9E-06 55.4 3.8 25 331-355 91-115 (312)
267 1rj9_A FTSY, signal recognitio 92.1 0.087 3E-06 55.1 3.8 26 329-354 101-126 (304)
268 1cr0_A DNA primase/helicase; R 92.1 0.085 2.9E-06 54.0 3.7 24 331-354 36-59 (296)
269 1nlf_A Regulatory protein REPA 92.1 0.086 2.9E-06 53.6 3.7 25 330-354 30-54 (279)
270 4b3f_X DNA-binding protein smu 92.0 0.23 7.9E-06 56.9 7.6 33 331-363 206-241 (646)
271 1vma_A Cell division protein F 92.0 0.14 4.8E-06 53.7 5.2 36 329-364 103-141 (306)
272 1z6t_A APAF-1, apoptotic prote 91.9 0.14 4.7E-06 57.4 5.4 44 279-352 126-169 (591)
273 2ffh_A Protein (FFH); SRP54, s 91.9 0.27 9.1E-06 54.0 7.5 36 329-364 97-135 (425)
274 3b9q_A Chloroplast SRP recepto 91.7 0.1 3.4E-06 54.6 3.8 25 330-354 100-124 (302)
275 1m8p_A Sulfate adenylyltransfe 91.7 0.11 3.9E-06 59.0 4.5 36 331-366 397-436 (573)
276 1sq5_A Pantothenate kinase; P- 91.5 0.18 6.2E-06 52.4 5.5 25 331-355 81-105 (308)
277 2ewv_A Twitching motility prot 91.5 0.1 3.5E-06 56.0 3.7 24 331-354 137-160 (372)
278 2iut_A DNA translocase FTSK; n 91.5 1 3.4E-05 51.3 11.8 35 331-365 215-256 (574)
279 1c9k_A COBU, adenosylcobinamid 91.3 0.12 4E-06 50.4 3.6 32 333-365 2-33 (180)
280 3e70_C DPA, signal recognition 91.3 0.12 4E-06 54.8 3.8 26 329-354 128-153 (328)
281 2px0_A Flagellar biosynthesis 91.2 0.12 4.1E-06 53.8 3.7 37 329-365 104-144 (296)
282 3tqc_A Pantothenate kinase; bi 91.2 0.13 4.3E-06 54.5 3.9 25 331-355 93-117 (321)
283 1bif_A 6-phosphofructo-2-kinas 91.0 0.073 2.5E-06 58.7 2.0 26 330-355 39-64 (469)
284 2ocp_A DGK, deoxyguanosine kin 91.0 0.13 4.4E-06 51.0 3.6 25 331-355 3-27 (241)
285 3tif_A Uncharacterized ABC tra 90.9 0.11 3.7E-06 52.2 2.9 33 323-355 23-56 (235)
286 2p6r_A Afuhel308 helicase; pro 90.9 0.88 3E-05 52.4 11.0 19 331-349 41-59 (702)
287 2pcj_A ABC transporter, lipopr 90.8 0.11 3.7E-06 51.7 2.8 33 323-355 22-55 (224)
288 1p5z_B DCK, deoxycytidine kina 90.7 0.066 2.3E-06 54.0 1.2 26 330-355 24-49 (263)
289 2og2_A Putative signal recogni 90.7 0.14 4.8E-06 54.9 3.8 25 330-354 157-181 (359)
290 3tqf_A HPR(Ser) kinase; transf 90.6 0.14 4.8E-06 49.8 3.3 33 326-359 12-44 (181)
291 3ice_A Transcription terminati 90.6 0.3 1E-05 53.3 6.2 24 331-354 175-198 (422)
292 3b85_A Phosphate starvation-in 90.6 0.11 3.7E-06 51.3 2.6 23 331-353 23-45 (208)
293 1lw7_A Transcriptional regulat 90.6 0.16 5.4E-06 54.0 4.0 26 331-356 171-196 (365)
294 2a5y_B CED-4; apoptosis; HET: 90.6 0.22 7.5E-06 55.8 5.4 44 280-352 131-174 (549)
295 2f1r_A Molybdopterin-guanine d 90.5 0.1 3.5E-06 50.0 2.2 25 331-355 3-27 (171)
296 3cr8_A Sulfate adenylyltranfer 90.4 0.12 4.1E-06 58.6 3.0 36 331-366 370-409 (552)
297 2cbz_A Multidrug resistance-as 90.4 0.13 4.4E-06 51.7 2.9 33 322-354 22-55 (237)
298 1g8f_A Sulfate adenylyltransfe 90.4 0.14 4.8E-06 57.6 3.5 26 331-356 396-421 (511)
299 1p9r_A General secretion pathw 90.4 0.17 6E-06 55.3 4.2 25 331-355 168-192 (418)
300 3vkw_A Replicase large subunit 90.3 0.43 1.5E-05 52.7 7.3 22 331-352 162-183 (446)
301 2onk_A Molybdate/tungstate ABC 90.3 0.15 5.1E-06 51.4 3.4 32 324-355 18-49 (240)
302 1xjc_A MOBB protein homolog; s 90.3 0.18 6.1E-06 48.5 3.7 24 331-354 5-28 (169)
303 2gza_A Type IV secretion syste 90.3 0.11 3.9E-06 55.3 2.6 32 331-362 176-209 (361)
304 2f9l_A RAB11B, member RAS onco 90.2 0.16 5.6E-06 48.3 3.4 24 331-354 6-29 (199)
305 1oix_A RAS-related protein RAB 90.1 0.15 5.2E-06 48.4 3.1 24 331-354 30-53 (191)
306 3sop_A Neuronal-specific septi 90.1 0.16 5.5E-06 52.1 3.4 24 331-354 3-26 (270)
307 2dyk_A GTP-binding protein; GT 90.1 0.18 6.1E-06 45.4 3.4 23 331-353 2-24 (161)
308 2wsm_A Hydrogenase expression/ 90.1 0.27 9.2E-06 47.4 4.9 25 331-355 31-55 (221)
309 1ek0_A Protein (GTP-binding pr 90.0 0.18 6E-06 45.7 3.3 23 331-353 4-26 (170)
310 2d2e_A SUFC protein; ABC-ATPas 90.0 0.17 5.8E-06 51.2 3.4 30 324-353 22-52 (250)
311 1b0u_A Histidine permease; ABC 90.0 0.14 4.9E-06 52.2 2.9 33 323-355 24-57 (262)
312 2pze_A Cystic fibrosis transme 89.9 0.12 4.1E-06 51.6 2.3 34 322-355 25-59 (229)
313 1np6_A Molybdopterin-guanine d 89.9 0.18 6.2E-06 48.5 3.4 24 331-354 7-30 (174)
314 1u8z_A RAS-related protein RAL 89.9 0.19 6.6E-06 45.2 3.4 23 331-353 5-27 (168)
315 4edh_A DTMP kinase, thymidylat 89.9 0.18 6E-06 50.0 3.4 25 331-355 7-31 (213)
316 1mv5_A LMRA, multidrug resista 89.8 0.15 5.1E-06 51.3 2.9 34 321-354 18-52 (243)
317 2lkc_A Translation initiation 89.8 0.23 7.8E-06 45.6 3.9 23 330-352 8-30 (178)
318 1nrj_B SR-beta, signal recogni 89.8 0.2 7E-06 48.0 3.7 24 331-354 13-36 (218)
319 1g6h_A High-affinity branched- 89.8 0.15 5.2E-06 51.7 2.9 33 323-355 25-58 (257)
320 3gfo_A Cobalt import ATP-bindi 89.7 0.12 4.2E-06 53.2 2.3 35 321-355 24-59 (275)
321 1kao_A RAP2A; GTP-binding prot 89.7 0.2 6.9E-06 45.0 3.4 23 331-353 4-26 (167)
322 2zu0_C Probable ATP-dependent 89.7 0.18 6.2E-06 51.5 3.4 31 324-354 39-70 (267)
323 1z2a_A RAS-related protein RAB 89.6 0.2 6.9E-06 45.3 3.4 23 331-353 6-28 (168)
324 1ji0_A ABC transporter; ATP bi 89.6 0.16 5.5E-06 51.0 2.9 32 324-355 25-57 (240)
325 2ff7_A Alpha-hemolysin translo 89.6 0.16 5.4E-06 51.4 2.9 34 322-355 26-60 (247)
326 2ixe_A Antigen peptide transpo 89.6 0.13 4.4E-06 52.8 2.3 33 323-355 37-70 (271)
327 1xti_A Probable ATP-dependent 89.6 1 3.5E-05 46.8 9.3 21 331-351 46-66 (391)
328 1sgw_A Putative ABC transporte 89.6 0.15 5.3E-06 50.5 2.8 33 323-355 27-60 (214)
329 2qi9_C Vitamin B12 import ATP- 89.6 0.13 4.5E-06 52.2 2.3 32 324-355 19-51 (249)
330 2h17_A ADP-ribosylation factor 89.6 0.18 6.1E-06 47.0 3.0 23 330-352 21-43 (181)
331 2ce2_X GTPase HRAS; signaling 89.6 0.2 6.9E-06 44.8 3.3 23 331-353 4-26 (166)
332 3fvq_A Fe(3+) IONS import ATP- 89.5 0.18 6.2E-06 54.1 3.4 33 323-355 22-55 (359)
333 4g1u_C Hemin import ATP-bindin 89.4 0.17 5.7E-06 51.9 2.9 32 323-354 29-61 (266)
334 2oap_1 GSPE-2, type II secreti 89.4 0.14 4.8E-06 57.5 2.5 34 331-364 261-296 (511)
335 4f4c_A Multidrug resistance pr 89.4 2.1 7.3E-05 53.2 13.3 41 323-363 436-479 (1321)
336 2ihy_A ABC transporter, ATP-bi 89.3 0.14 4.7E-06 52.9 2.3 32 324-355 40-72 (279)
337 2ghi_A Transport protein; mult 89.3 0.17 5.9E-06 51.5 2.9 34 321-354 36-70 (260)
338 2olj_A Amino acid ABC transpor 89.3 0.17 5.9E-06 51.8 2.9 32 324-355 43-75 (263)
339 3gd7_A Fusion complex of cysti 89.3 0.14 4.8E-06 55.6 2.3 34 321-354 37-71 (390)
340 1m2o_B GTP-binding protein SAR 89.2 0.22 7.4E-06 47.2 3.4 23 330-352 23-45 (190)
341 3bh0_A DNAB-like replicative h 89.1 0.34 1.2E-05 50.5 5.1 33 331-363 69-104 (315)
342 1ls1_A Signal recognition part 89.1 0.44 1.5E-05 49.3 5.9 35 329-363 97-134 (295)
343 2ged_A SR-beta, signal recogni 89.1 0.25 8.4E-06 46.3 3.6 24 331-354 49-72 (193)
344 2yhs_A FTSY, cell division pro 89.0 0.22 7.5E-06 55.8 3.7 25 330-354 293-317 (503)
345 1z47_A CYSA, putative ABC-tran 89.0 0.21 7.2E-06 53.5 3.4 35 321-355 31-66 (355)
346 3v9p_A DTMP kinase, thymidylat 89.0 0.17 5.9E-06 50.7 2.6 24 331-354 26-49 (227)
347 2gk6_A Regulator of nonsense t 89.0 0.33 1.1E-05 55.5 5.3 24 331-354 196-219 (624)
348 1vpl_A ABC transporter, ATP-bi 88.9 0.19 6.5E-06 51.2 2.9 34 322-355 32-66 (256)
349 2yz2_A Putative ABC transporte 88.9 0.19 6.6E-06 51.3 2.9 33 323-355 25-58 (266)
350 3ihw_A Centg3; RAS, centaurin, 88.9 0.25 8.6E-06 46.5 3.6 25 329-353 19-43 (184)
351 2yyz_A Sugar ABC transporter, 88.8 0.22 7.6E-06 53.4 3.4 33 323-355 21-54 (359)
352 3thx_A DNA mismatch repair pro 88.8 1 3.6E-05 54.0 9.5 22 331-352 663-684 (934)
353 2it1_A 362AA long hypothetical 88.8 0.22 7.6E-06 53.4 3.4 33 323-355 21-54 (362)
354 1z0j_A RAB-22, RAS-related pro 88.8 0.25 8.7E-06 44.7 3.4 24 331-354 7-30 (170)
355 3rlf_A Maltose/maltodextrin im 88.7 0.23 7.7E-06 53.8 3.4 33 323-355 21-54 (381)
356 2wji_A Ferrous iron transport 88.7 0.24 8.1E-06 45.6 3.2 22 331-352 4-25 (165)
357 3thx_B DNA mismatch repair pro 88.7 0.38 1.3E-05 57.7 5.7 29 325-353 667-696 (918)
358 3tmk_A Thymidylate kinase; pho 88.7 0.4 1.4E-05 47.7 5.0 27 331-357 6-32 (216)
359 2zej_A Dardarin, leucine-rich 88.7 0.19 6.5E-06 47.2 2.5 22 331-352 3-24 (184)
360 3con_A GTPase NRAS; structural 88.7 0.24 8.3E-06 46.2 3.3 25 329-353 20-44 (190)
361 2nq2_C Hypothetical ABC transp 88.7 0.2 6.9E-06 50.8 2.9 32 324-355 24-56 (253)
362 2wjg_A FEOB, ferrous iron tran 88.6 0.27 9.2E-06 45.7 3.5 22 331-352 8-29 (188)
363 4ag6_A VIRB4 ATPase, type IV s 88.6 0.4 1.4E-05 51.2 5.3 34 330-363 35-71 (392)
364 2a5j_A RAS-related protein RAB 88.6 0.33 1.1E-05 45.6 4.1 24 330-353 21-44 (191)
365 1v43_A Sugar-binding transport 88.6 0.23 7.9E-06 53.5 3.4 33 323-355 29-62 (372)
366 1g29_1 MALK, maltose transport 88.6 0.23 7.9E-06 53.5 3.4 32 324-355 22-54 (372)
367 1c1y_A RAS-related protein RAP 88.6 0.27 9.3E-06 44.3 3.4 23 331-353 4-26 (167)
368 2nzj_A GTP-binding protein REM 88.5 0.25 8.5E-06 45.1 3.2 22 331-352 5-26 (175)
369 3d31_A Sulfate/molybdate ABC t 88.5 0.2 6.7E-06 53.6 2.8 33 323-355 18-51 (348)
370 1g16_A RAS-related protein SEC 88.5 0.26 9E-06 44.6 3.3 23 331-353 4-26 (170)
371 2h57_A ADP-ribosylation factor 88.5 0.2 6.8E-06 47.0 2.5 25 329-353 20-44 (190)
372 1f2t_A RAD50 ABC-ATPase; DNA d 88.5 0.31 1.1E-05 45.3 3.8 29 326-354 19-47 (149)
373 3lv8_A DTMP kinase, thymidylat 88.4 0.28 9.6E-06 49.5 3.7 24 331-354 28-51 (236)
374 1z08_A RAS-related protein RAB 88.4 0.28 9.4E-06 44.5 3.4 23 331-353 7-29 (170)
375 4i1u_A Dephospho-COA kinase; s 88.4 0.24 8.2E-06 49.2 3.2 31 331-362 10-40 (210)
376 1wms_A RAB-9, RAB9, RAS-relate 88.4 0.27 9.4E-06 45.0 3.4 23 331-353 8-30 (177)
377 1ky3_A GTP-binding protein YPT 88.3 0.27 9.4E-06 45.0 3.4 23 331-353 9-31 (182)
378 2zj8_A DNA helicase, putative 88.3 1.8 6.1E-05 49.9 10.9 18 331-348 40-57 (720)
379 1r2q_A RAS-related protein RAB 88.2 0.28 9.4E-06 44.3 3.2 23 331-353 7-29 (170)
380 3bc1_A RAS-related protein RAB 88.1 0.29 1E-05 45.2 3.4 23 331-353 12-34 (195)
381 1r8s_A ADP-ribosylation factor 88.0 0.3 1E-05 44.1 3.4 22 332-353 2-23 (164)
382 1j8m_F SRP54, signal recogniti 88.0 0.42 1.4E-05 49.7 4.8 35 330-364 98-135 (297)
383 2erx_A GTP-binding protein DI- 87.9 0.29 9.9E-06 44.3 3.2 22 331-352 4-25 (172)
384 2a9k_A RAS-related protein RAL 87.9 0.3 1E-05 44.9 3.4 24 330-353 18-41 (187)
385 2fn4_A P23, RAS-related protei 87.9 0.32 1.1E-05 44.5 3.5 23 331-353 10-32 (181)
386 3q85_A GTP-binding protein REM 87.9 0.29 1E-05 44.4 3.2 21 331-351 3-23 (169)
387 2xau_A PRE-mRNA-splicing facto 87.8 1 3.6E-05 52.9 8.6 21 331-351 110-130 (773)
388 1upt_A ARL1, ADP-ribosylation 87.8 0.34 1.2E-05 44.0 3.6 22 331-352 8-29 (171)
389 3tui_C Methionine import ATP-b 87.7 0.18 6.3E-06 54.3 2.0 35 321-355 44-79 (366)
390 2npi_A Protein CLP1; CLP1-PCF1 87.7 0.26 9.1E-06 54.5 3.3 24 331-354 139-162 (460)
391 1z06_A RAS-related protein RAB 87.7 0.31 1.1E-05 45.6 3.4 24 330-353 20-43 (189)
392 3ld9_A DTMP kinase, thymidylat 87.6 0.34 1.2E-05 48.5 3.8 26 331-356 22-47 (223)
393 3q72_A GTP-binding protein RAD 87.6 0.31 1.1E-05 44.1 3.2 21 331-351 3-23 (166)
394 1z0f_A RAB14, member RAS oncog 87.5 0.34 1.2E-05 44.2 3.4 23 331-353 16-38 (179)
395 1f6b_A SAR1; gtpases, N-termin 87.5 0.31 1.1E-05 46.5 3.2 22 330-351 25-46 (198)
396 2y8e_A RAB-protein 6, GH09086P 87.5 0.33 1.1E-05 44.3 3.3 23 331-353 15-37 (179)
397 4tmk_A Protein (thymidylate ki 87.4 0.31 1.1E-05 48.3 3.3 24 331-354 4-27 (213)
398 4dsu_A GTPase KRAS, isoform 2B 87.4 0.34 1.2E-05 44.7 3.4 23 331-353 5-27 (189)
399 2pjz_A Hypothetical protein ST 87.4 0.24 8.3E-06 50.7 2.5 31 324-354 24-54 (263)
400 1oxx_K GLCV, glucose, ABC tran 87.3 0.21 7.1E-06 53.4 2.1 33 323-355 23-56 (353)
401 3kkq_A RAS-related protein M-R 87.3 0.36 1.2E-05 44.6 3.5 24 330-353 18-41 (183)
402 3tw8_B RAS-related protein RAB 87.3 0.31 1.1E-05 44.6 3.0 21 331-351 10-30 (181)
403 2q6t_A DNAB replication FORK h 87.2 0.55 1.9E-05 51.3 5.4 33 331-363 201-237 (444)
404 2gj8_A MNME, tRNA modification 87.2 0.34 1.2E-05 45.1 3.2 23 331-353 5-27 (172)
405 1wp9_A ATP-dependent RNA helic 87.1 0.98 3.3E-05 47.6 7.2 33 332-364 25-61 (494)
406 2hxs_A RAB-26, RAS-related pro 87.1 0.33 1.1E-05 44.5 3.1 22 331-352 7-28 (178)
407 1m7b_A RND3/RHOE small GTP-bin 87.1 0.35 1.2E-05 45.1 3.3 23 331-353 8-30 (184)
408 1yrb_A ATP(GTP)binding protein 87.0 0.64 2.2E-05 46.0 5.4 33 331-363 15-49 (262)
409 3nh6_A ATP-binding cassette SU 87.0 0.19 6.6E-06 52.6 1.6 31 325-355 74-105 (306)
410 4bas_A ADP-ribosylation factor 86.9 0.33 1.1E-05 45.5 3.0 23 329-351 16-38 (199)
411 3clv_A RAB5 protein, putative; 86.9 0.4 1.4E-05 44.5 3.6 23 331-353 8-30 (208)
412 2oil_A CATX-8, RAS-related pro 86.9 0.37 1.3E-05 45.1 3.4 23 331-353 26-48 (193)
413 2bme_A RAB4A, RAS-related prot 86.9 0.37 1.3E-05 44.6 3.3 23 331-353 11-33 (186)
414 2bbs_A Cystic fibrosis transme 86.9 0.29 1E-05 50.8 2.8 33 322-354 55-88 (290)
415 2efe_B Small GTP-binding prote 86.9 0.38 1.3E-05 44.1 3.4 23 331-353 13-35 (181)
416 2gks_A Bifunctional SAT/APS ki 86.8 0.52 1.8E-05 53.2 5.1 35 331-365 373-410 (546)
417 2hf9_A Probable hydrogenase ni 86.8 0.4 1.4E-05 46.3 3.7 24 331-354 39-62 (226)
418 3t1o_A Gliding protein MGLA; G 86.8 0.38 1.3E-05 44.6 3.4 24 331-354 15-38 (198)
419 2g6b_A RAS-related protein RAB 86.7 0.39 1.3E-05 44.0 3.4 24 330-353 10-33 (180)
420 1svi_A GTP-binding protein YSX 86.7 0.39 1.3E-05 44.9 3.4 23 330-352 23-45 (195)
421 2vp4_A Deoxynucleoside kinase; 86.7 0.22 7.6E-06 49.2 1.7 23 331-353 21-43 (230)
422 1mh1_A RAC1; GTP-binding, GTPa 86.6 0.4 1.4E-05 44.1 3.4 23 331-353 6-28 (186)
423 2wjy_A Regulator of nonsense t 86.6 0.54 1.9E-05 55.5 5.3 24 331-354 372-395 (800)
424 2xxa_A Signal recognition part 86.6 0.62 2.1E-05 51.1 5.4 38 329-366 99-140 (433)
425 2cxx_A Probable GTP-binding pr 86.6 0.37 1.3E-05 44.7 3.1 21 332-352 3-23 (190)
426 2bov_A RAla, RAS-related prote 86.5 0.42 1.4E-05 45.0 3.5 24 330-353 14-37 (206)
427 3e2i_A Thymidine kinase; Zn-bi 86.5 1.2 4.2E-05 44.5 7.0 32 331-362 29-63 (219)
428 2gf9_A RAS-related protein RAB 86.4 0.46 1.6E-05 44.4 3.8 23 331-353 23-45 (189)
429 1pui_A ENGB, probable GTP-bind 86.4 0.23 7.8E-06 47.3 1.6 22 331-352 27-48 (210)
430 3k53_A Ferrous iron transport 86.3 0.39 1.3E-05 48.6 3.3 23 331-353 4-26 (271)
431 2dpy_A FLII, flagellum-specifi 86.3 0.6 2E-05 51.3 5.1 27 331-357 158-184 (438)
432 2obl_A ESCN; ATPase, hydrolase 86.2 0.63 2.1E-05 49.5 5.1 27 331-357 72-98 (347)
433 3tkl_A RAS-related protein RAB 86.2 0.43 1.5E-05 44.5 3.4 23 331-353 17-39 (196)
434 1tf7_A KAIC; homohexamer, hexa 86.2 0.41 1.4E-05 53.5 3.7 24 331-354 282-305 (525)
435 3c5c_A RAS-like protein 12; GD 86.1 0.43 1.5E-05 44.9 3.4 24 330-353 21-44 (187)
436 2qm8_A GTPase/ATPase; G protei 86.1 0.44 1.5E-05 50.3 3.8 24 331-354 56-79 (337)
437 3pqc_A Probable GTP-binding pr 86.1 0.41 1.4E-05 44.4 3.2 23 331-353 24-46 (195)
438 2iwr_A Centaurin gamma 1; ANK 86.0 0.36 1.2E-05 44.4 2.7 24 330-353 7-30 (178)
439 2atv_A RERG, RAS-like estrogen 86.0 0.47 1.6E-05 44.7 3.6 23 331-353 29-51 (196)
440 3euj_A Chromosome partition pr 86.0 0.36 1.2E-05 53.8 3.1 34 322-355 21-54 (483)
441 1moz_A ARL1, ADP-ribosylation 86.0 0.33 1.1E-05 44.8 2.4 21 331-351 19-39 (183)
442 3bwd_D RAC-like GTP-binding pr 85.9 0.5 1.7E-05 43.4 3.6 23 331-353 9-31 (182)
443 1x3s_A RAS-related protein RAB 85.9 0.42 1.4E-05 44.5 3.1 24 330-353 15-38 (195)
444 3t5g_A GTP-binding protein RHE 85.9 0.44 1.5E-05 43.9 3.3 22 331-352 7-28 (181)
445 4a1f_A DNAB helicase, replicat 85.9 0.66 2.3E-05 49.3 5.0 33 331-363 47-82 (338)
446 1vg8_A RAS-related protein RAB 85.7 0.46 1.6E-05 44.8 3.4 23 331-353 9-31 (207)
447 3dz8_A RAS-related protein RAB 85.5 0.47 1.6E-05 44.5 3.3 24 331-354 24-47 (191)
448 3qf7_A RAD50; ABC-ATPase, ATPa 85.5 0.36 1.2E-05 51.6 2.7 30 325-354 18-47 (365)
449 1ksh_A ARF-like protein 2; sma 85.5 0.47 1.6E-05 44.0 3.2 22 331-352 19-40 (186)
450 2fg5_A RAB-22B, RAS-related pr 85.4 0.47 1.6E-05 44.6 3.3 23 331-353 24-46 (192)
451 1zd9_A ADP-ribosylation factor 85.4 0.48 1.7E-05 44.4 3.3 24 330-353 22-45 (188)
452 3reg_A RHO-like small GTPase; 85.4 0.49 1.7E-05 44.4 3.4 23 331-353 24-46 (194)
453 3ch4_B Pmkase, phosphomevalona 85.4 0.8 2.7E-05 45.3 5.0 38 328-365 9-47 (202)
454 2p5s_A RAS and EF-hand domain 85.3 0.52 1.8E-05 44.6 3.5 24 330-353 28-51 (199)
455 2p67_A LAO/AO transport system 85.2 0.75 2.5E-05 48.4 5.0 24 331-354 57-80 (341)
456 2bcg_Y Protein YP2, GTP-bindin 85.1 0.5 1.7E-05 44.8 3.3 23 331-353 9-31 (206)
457 2gf0_A GTP-binding protein DI- 85.1 0.56 1.9E-05 43.8 3.6 22 331-352 9-30 (199)
458 2www_A Methylmalonic aciduria 85.0 1.1 3.8E-05 47.4 6.3 24 331-354 75-98 (349)
459 3oes_A GTPase rhebl1; small GT 85.0 0.5 1.7E-05 44.8 3.3 25 330-354 24-48 (201)
460 3qks_A DNA double-strand break 85.0 0.65 2.2E-05 45.2 4.2 31 326-356 19-49 (203)
461 1zbd_A Rabphilin-3A; G protein 85.0 0.5 1.7E-05 44.6 3.2 23 331-353 9-31 (203)
462 1zj6_A ADP-ribosylation factor 85.0 0.52 1.8E-05 44.0 3.3 22 331-352 17-38 (187)
463 1fzq_A ADP-ribosylation factor 84.9 0.5 1.7E-05 44.2 3.2 22 331-352 17-38 (181)
464 2fh5_B SR-beta, signal recogni 84.9 0.54 1.8E-05 44.9 3.4 24 331-354 8-31 (214)
465 2b6h_A ADP-ribosylation factor 84.7 0.54 1.9E-05 44.4 3.3 22 330-351 29-50 (192)
466 3lxx_A GTPase IMAP family memb 84.7 0.5 1.7E-05 46.5 3.2 24 330-353 29-52 (239)
467 2gco_A H9, RHO-related GTP-bin 84.7 0.77 2.6E-05 43.5 4.4 24 330-353 25-48 (201)
468 3cph_A RAS-related protein SEC 84.6 0.56 1.9E-05 44.5 3.4 23 331-353 21-43 (213)
469 1vt4_I APAF-1 related killer D 84.6 0.75 2.6E-05 56.1 5.1 43 279-352 130-172 (1221)
470 2o8b_B DNA mismatch repair pro 84.6 1 3.6E-05 54.5 6.5 21 331-351 790-810 (1022)
471 1e9r_A Conjugal transfer prote 84.5 0.79 2.7E-05 49.5 4.9 34 330-363 53-89 (437)
472 3hjn_A DTMP kinase, thymidylat 84.5 0.91 3.1E-05 44.1 4.9 30 333-362 3-35 (197)
473 1knx_A Probable HPR(Ser) kinas 84.4 0.61 2.1E-05 49.1 3.9 40 326-366 143-182 (312)
474 1gwn_A RHO-related GTP-binding 84.4 0.55 1.9E-05 45.2 3.3 23 331-353 29-51 (205)
475 2ew1_A RAS-related protein RAB 84.3 0.57 1.9E-05 45.0 3.3 23 331-353 27-49 (201)
476 2atx_A Small GTP binding prote 84.0 0.6 2E-05 43.7 3.3 23 331-353 19-41 (194)
477 3bgw_A DNAB-like replicative h 84.0 0.81 2.8E-05 50.2 4.8 34 331-364 198-234 (444)
478 4hlc_A DTMP kinase, thymidylat 84.0 0.61 2.1E-05 45.7 3.4 24 332-355 4-27 (205)
479 1ko7_A HPR kinase/phosphatase; 83.9 0.58 2E-05 49.4 3.4 33 326-359 140-172 (314)
480 2yv5_A YJEQ protein; hydrolase 83.7 0.62 2.1E-05 48.3 3.5 24 330-354 165-188 (302)
481 2qnr_A Septin-2, protein NEDD5 83.5 0.53 1.8E-05 48.8 2.9 23 331-353 19-41 (301)
482 2fv8_A H6, RHO-related GTP-bin 83.5 0.64 2.2E-05 44.3 3.3 24 330-353 25-48 (207)
483 2fu5_C RAS-related protein RAB 83.5 0.39 1.3E-05 44.4 1.7 22 331-352 9-30 (183)
484 2il1_A RAB12; G-protein, GDP, 83.4 0.6 2.1E-05 44.0 3.0 21 331-351 27-47 (192)
485 2cjw_A GTP-binding protein GEM 83.4 0.64 2.2E-05 44.1 3.2 23 331-353 7-29 (192)
486 1q57_A DNA primase/helicase; d 83.2 0.91 3.1E-05 50.2 4.9 33 331-363 243-279 (503)
487 2o5v_A DNA replication and rep 83.2 0.72 2.5E-05 49.4 3.9 32 323-354 19-50 (359)
488 2o52_A RAS-related protein RAB 83.2 0.64 2.2E-05 44.2 3.1 21 331-351 26-46 (200)
489 2q3h_A RAS homolog gene family 83.1 0.69 2.4E-05 43.5 3.3 23 330-352 20-42 (201)
490 2rcn_A Probable GTPase ENGC; Y 83.1 0.65 2.2E-05 49.8 3.4 27 328-354 213-239 (358)
491 2hup_A RAS-related protein RAB 82.9 0.7 2.4E-05 44.0 3.3 23 331-353 30-52 (201)
492 2f7s_A C25KG, RAS-related prot 82.9 0.68 2.3E-05 44.2 3.2 22 331-352 26-47 (217)
493 1tq4_A IIGP1, interferon-induc 82.8 1.3 4.3E-05 48.4 5.7 24 331-354 70-93 (413)
494 3cbq_A GTP-binding protein REM 82.8 0.55 1.9E-05 44.7 2.5 21 331-351 24-44 (195)
495 2j0v_A RAC-like GTP-binding pr 82.8 0.71 2.4E-05 43.9 3.3 23 331-353 10-32 (212)
496 3llu_A RAS-related GTP-binding 82.7 0.69 2.3E-05 43.7 3.1 23 330-352 20-42 (196)
497 2qag_B Septin-6, protein NEDD5 82.6 0.56 1.9E-05 51.5 2.8 21 333-353 45-65 (427)
498 2eyq_A TRCF, transcription-rep 82.5 2.4 8.2E-05 52.1 8.5 21 331-351 625-645 (1151)
499 2j1l_A RHO-related GTP-binding 82.5 0.7 2.4E-05 44.4 3.2 22 331-352 35-56 (214)
500 1u0l_A Probable GTPase ENGC; p 82.5 0.56 1.9E-05 48.5 2.6 25 330-354 169-193 (301)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=100.00 E-value=5.6e-42 Score=367.81 Aligned_cols=343 Identities=58% Similarity=0.970 Sum_probs=275.6
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT 344 (684)
.+++.++++.|++.|+||+.+|+.|..++..++++...... ......++.++||+||||||||
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-----------------~~~~~~~~~~vll~GppGtGKT 65 (363)
T 3hws_A 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT-----------------SNGVELGKSNILLIGPTGSGKT 65 (363)
T ss_dssp CCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSC-----------------SSSCCCCCCCEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccc-----------------cccccCCCCeEEEECCCCCCHH
Confidence 56889999999999999999999999999888776432211 1122334589999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHH
Q 005667 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 345 ~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~ 424 (684)
++|++||+.++.+|+.++|+.+.+++|+|++....++.++..+.+.+..+.++||||||||++...+...+.+.+.++++
T Consensus 66 ~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~ 145 (363)
T 3hws_A 66 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEG 145 (363)
T ss_dssp HHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHH
T ss_pred HHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHH
Confidence 99999999999999999999998888999987788889988887777788899999999999998876666677777788
Q ss_pred HHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcccc-CCCCcCcccccccccCCCchh
Q 005667 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~-~~IGf~~~~~~~~~~~~~~~~ 503 (684)
+|+.||++|||..+.++..++......+.+.+.++|++||++|++.++++++..+..+ ..+||....... ...
T Consensus 146 ~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~------~~~ 219 (363)
T 3hws_A 146 VQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAK------SDK 219 (363)
T ss_dssp HHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------------CC
T ss_pred HHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCcccccccc------ccc
Confidence 9999999999888888777776666666778999999999999999999999988776 789998765432 112
Q ss_pred hhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHH
Q 005667 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~ 583 (684)
.....+.+.+.+.++.+++|+|+|++||+.++.|.|++.+++.+|+...++.+.++|.+.+...+..+.++++++++|++
T Consensus 220 ~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~ 299 (363)
T 3hws_A 220 ASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 299 (363)
T ss_dssp SCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred hhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHH
Confidence 33567888999999999999999999999999999999999999999888888899988888888899999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCccc
Q 005667 584 KAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 584 ~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~ 634 (684)
++|+|++|+|+|+++|++++.++++++++.+ .++.+.||++.|....
T Consensus 300 ~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~----~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 300 KAMARKTGARGLRSIVEAALLDTMYDLPSME----DVEKVVIDESVIDGQS 346 (363)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHHHHSTTTCC----CSEEEECHHHHTTCCS
T ss_pred hhcCCccCchHHHHHHHHHHHHHHHhccccc----CCceeEEcHHHHhCcC
Confidence 9999999999999999999999999998764 5688999999988765
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=100.00 E-value=8.7e-37 Score=328.66 Aligned_cols=356 Identities=50% Similarity=0.822 Sum_probs=258.8
Q ss_pred CCCCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCc
Q 005667 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (684)
Q Consensus 263 ~~~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTG 342 (684)
+..++++++.+.|++.|+||++||+.|..++.+|+++...+..-... ...++++|. .....+..++.++||+||||||
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~p~-~~~~~~~~~~~~ill~Gp~GtG 84 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQ-DNQDSNVEL-EHLEEVELSKSNILLIGPTGSG 84 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHH-HHHHHTTCCCCCEEEECCTTSS
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccccccccc-ccccccccCCCCEEEECCCCCC
Confidence 34678999999999999999999999999998888876543200000 000000000 0000112234799999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 343 KTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 343 KT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
||++|+++|+.++.+|+.++++.+.+.+|+|++.+..+..++....+.+..+.++||||||||++...+.......+.++
T Consensus 85 KT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~ 164 (376)
T 1um8_A 85 KTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 164 (376)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred HHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccch
Confidence 99999999999999999999999987889998777778888877766677788999999999999987665556667778
Q ss_pred HHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
+++|+.||++||+..+.+|..|.......+.+.++++|++||+++++.++++.+.+|.....+||..+....
T Consensus 165 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~-------- 236 (376)
T 1um8_A 165 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSK-------- 236 (376)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCT--------
T ss_pred HHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhc--------
Confidence 889999999999888878777777777777788999999999999999999999988777788998765421
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHH
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La 582 (684)
.....+++.+.+.++.+..|.|+|++|++.++.|++|+.+++.+|+...++.+.++|.+.+...+..+.++++++++|+
T Consensus 237 -~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 315 (376)
T 1um8_A 237 -KEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIA 315 (376)
T ss_dssp -TTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred -cchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHH
Confidence 0113455667777888888999999999999999999999999999987777888888888777888999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCccc
Q 005667 583 KKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 583 ~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~ 634 (684)
+++|.+++|+|+|+++|++++.+++++.+.. ....+.||++.+....
T Consensus 316 ~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~-----~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 316 QLALERKTGARGLRAIIEDFCLDIMFDLPKL-----KGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG-----TTSEEEECHHHHTTSS
T ss_pred HHhcccccCcHHHHHHHHHHHHHHHhhccCC-----CCCEEEEeHHHhcCCC
Confidence 9988889999999999999999999988764 2467889999888754
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=8.1e-35 Score=321.49 Aligned_cols=286 Identities=40% Similarity=0.655 Sum_probs=233.2
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT 344 (684)
..+|+++.+.|+++|+||+++|+.|..++.++|+|...... ...+.+++++||+||||||||
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~------------------~~~~~~~~~iLl~GppGtGKT 64 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEP------------------LRHEVTPKNILMIGPTGVGKT 64 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTT------------------TTTTCCCCCEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccc------------------cccccCCceEEEEcCCCCCHH
Confidence 47899999999999999999999999999999887532110 112234589999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcc------------------------------------
Q 005667 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD------------------------------------ 388 (684)
Q Consensus 345 ~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~------------------------------------ 388 (684)
++|+++|+.++.+|+.++++.+...+|+|++.+..++.++..+.
T Consensus 65 ~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~ 144 (444)
T 1g41_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWG 144 (444)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------
T ss_pred HHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999998778999865666666554320
Q ss_pred ----------------------------------------hh--------------------------------------
Q 005667 389 ----------------------------------------YN-------------------------------------- 390 (684)
Q Consensus 389 ----------------------------------------~~-------------------------------------- 390 (684)
..
T Consensus 145 ~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~ 224 (444)
T 1g41_A 145 EVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALK 224 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHH
Confidence 00
Q ss_pred --------------------hHhh-cCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCC
Q 005667 391 --------------------VAAA-QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (684)
Q Consensus 391 --------------------v~~a-~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~ 449 (684)
+..+ .++|||+||||++....+ +.++|++++++|++||++|||..+.+
T Consensus 225 ~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~--------- 293 (444)
T 1g41_A 225 ALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST--------- 293 (444)
T ss_dssp -CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE---------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc---------
Confidence 0122 678999999999987533 35789999999999999999877653
Q ss_pred CCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCccccc
Q 005667 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (684)
Q Consensus 450 ~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~ 529 (684)
....+++++++|||||+|.. ..+.| ++|||++
T Consensus 294 --~~~~~d~~~ilfI~~gaf~~-----------------------------------------~~~~d-----lipel~~ 325 (444)
T 1g41_A 294 --KHGMVKTDHILFIASGAFQV-----------------------------------------ARPSD-----LIPELQG 325 (444)
T ss_dssp --TTEEEECTTCEEEEEECCSS-----------------------------------------CCGGG-----SCHHHHT
T ss_pred --ccceecCCcEEEEecccccc-----------------------------------------CChhh-----cchHHhc
Confidence 12589999999999998641 00111 6699999
Q ss_pred ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcC-----CCCCChHHHHHHHHHHHH
Q 005667 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI-----SKNTGARGLRSLLENILM 604 (684)
Q Consensus 530 R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay-----~~~~GAR~Lr~iIe~~l~ 604 (684)
||+++|.|++|+++|+.+|++++.+.+.+||.+.+...++.+.|+++|++.|++.++ ..+.|||.|+++|++++.
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 999999999999999999999888999999999999999999999999999999865 489999999999999999
Q ss_pred HHHhcCCCCcCCCccccEEEecccccCc
Q 005667 605 DAMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 605 ~al~e~~~~~~g~~~i~~v~vde~~v~~ 632 (684)
+.++++++.+ ...+.||.+.|..
T Consensus 406 ~~~~~~~~~~-----~~~~~i~~~~v~~ 428 (444)
T 1g41_A 406 KISFSASDMN-----GQTVNIDAAYVAD 428 (444)
T ss_dssp HHHHHGGGCT-----TCEEEECHHHHHH
T ss_pred HHHhhccccC-----CCeEEEeHHHHHH
Confidence 9999998653 3678899887765
No 4
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.95 E-value=1.4e-26 Score=239.30 Aligned_cols=286 Identities=40% Similarity=0.652 Sum_probs=214.3
Q ss_pred CCChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005667 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT 344 (684)
..+|.++.+.|++.|+||+++++.|..++..++.+....... .....+.++||+||||||||
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~~~~~~vll~G~~GtGKT 64 (310)
T 1ofh_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPL------------------RHEVTPKNILMIGPTGVGKT 64 (310)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHH------------------HHHCCCCCEEEECCTTSSHH
T ss_pred cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccc------------------cccCCCceEEEECCCCCCHH
Confidence 367899999999999999999999999997655432110000 00112479999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhh-cCCEEEEccccccchhccccccCCCCchH
Q 005667 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA-QQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 345 ~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a-~~gVLfIDEIDkL~~~r~~~~~~~d~~~e 423 (684)
++|+++|+.++.+++.++|+.+...+|+|.+....++.++...++.+..+ .++||||||||++...... .+.+..++
T Consensus 65 ~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~ 142 (310)
T 1ofh_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSRE 142 (310)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHH
Confidence 99999999999999999999998778999876777888887665444443 5799999999999876431 23444555
Q ss_pred HHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005667 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~ 503 (684)
.+++.|+++||+..+.. ..+ .+...+++||+++++.. ..
T Consensus 143 ~~~~~Ll~~le~~~~~~--------~~~---~~~~~~~~~i~~~~~~~------------------~~------------ 181 (310)
T 1ofh_A 143 GVQRDLLPLVEGSTVST--------KHG---MVKTDHILFIASGAFQV------------------AR------------ 181 (310)
T ss_dssp HHHHHHHHHHHCCEEEE--------TTE---EEECTTCEEEEEECCSS------------------SC------------
T ss_pred HHHHHHHHHhcCCeEec--------ccc---cccCCcEEEEEcCCccc------------------CC------------
Confidence 67999999999654431 111 35667888998875310 00
Q ss_pred hhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHH
Q 005667 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~ 583 (684)
...+.|+|++||+.++.|++++.+++.+|+++.+..+.++|.+.+...+..+.++++++++|++
T Consensus 182 ----------------~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 245 (310)
T 1ofh_A 182 ----------------PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 245 (310)
T ss_dssp ----------------GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHH
T ss_pred ----------------cccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHH
Confidence 0126699999999889999999999999999766667777777777778888999999999999
Q ss_pred hcCC-----CCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCc
Q 005667 584 KAIS-----KNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 584 ~ay~-----~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~ 632 (684)
+++. +.+++|.|++++++++..+..+..... -..+.|+.+.+..
T Consensus 246 ~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~-----~~~~~i~~~~v~~ 294 (310)
T 1ofh_A 246 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMN-----GQTVNIDAAYVAD 294 (310)
T ss_dssp HHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCT-----TCEEEECHHHHHH
T ss_pred HhhhhcccccccCcHHHHHHHHHHHHhhhcCCcccc-----CCEEEEeeHHHHH
Confidence 7654 368899999999999988776654322 1345566665544
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.95 E-value=1.4e-26 Score=270.89 Aligned_cols=273 Identities=21% Similarity=0.313 Sum_probs=199.6
Q ss_pred CCCCCCCCCCCCC----hHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCccccccc
Q 005667 255 CWGGSNLGNKFPT----PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (684)
Q Consensus 255 ~~~g~p~~~~~~~----~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 330 (684)
.|+++|....... ...+++.|.+.|+||+++++.|..++... ..|..++++| .
T Consensus 432 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~------------~~g~~~~~~p-----------~ 488 (758)
T 1r6b_X 432 RIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA------------RAGLGHEHKP-----------V 488 (758)
T ss_dssp HHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH------------HTTCSCTTSC-----------S
T ss_pred HhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH------------hcccCCCCCC-----------c
Confidence 4677776554443 33478889999999999999999888521 2233333332 4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-----------ccccccchHHHHHHHHhhcchhhHhhcCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~-----------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVL 399 (684)
.++||+||||||||++|+++|+.++.+|+.++|+++.+ ++|+|++....+...+.. +.++||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-------~~~~vl 561 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-------HPHAVL 561 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH-------CSSEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh-------CCCcEE
Confidence 68999999999999999999999999999999998853 357777655555555544 346899
Q ss_pred EEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhc
Q 005667 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (684)
Q Consensus 400 fIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r 479 (684)
|||||++++++ +++.|+++||+..+. +..+ ..++++|++||+|+|... +.++
T Consensus 562 ~lDEi~~~~~~--------------~~~~Ll~~le~~~~~--------~~~g--~~~~~~~~~iI~tsN~~~-~~~~--- 613 (758)
T 1r6b_X 562 LLDEIEKAHPD--------------VFNILLQVMDNGTLT--------DNNG--RKADFRNVVLVMTTNAGV-RETE--- 613 (758)
T ss_dssp EEETGGGSCHH--------------HHHHHHHHHHHSEEE--------ETTT--EEEECTTEEEEEEECSSC-C------
T ss_pred EEeCccccCHH--------------HHHHHHHHhcCcEEE--------cCCC--CEEecCCeEEEEecCcch-hhhh---
Confidence 99999999887 999999999943332 2223 478889999999998632 1111
Q ss_pred cccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHH
Q 005667 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (684)
Q Consensus 480 ~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kq 559 (684)
+..+||...... .. ..+.++..|.|+|++||+.+|.|++|+.+++.+|+...+..+.++
T Consensus 614 --~~~~g~~~~~~~-------------~~------~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 614 --RKSIGLIHQDNS-------------TD------AMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp -----------------------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred --hcccCccccchH-------------HH------HHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 123555432110 01 112344468999999999999999999999999999866655444
Q ss_pred HHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcC
Q 005667 560 YRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 560 y~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
+...++.+.++++++++|++++|+.++|+|+|+++|++.+.+.+.+.
T Consensus 673 ----~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~ 719 (758)
T 1r6b_X 673 ----LDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_dssp ----HHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred ----HHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 45567788999999999999999999999999999999999877653
No 6
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.94 E-value=5.3e-26 Score=266.39 Aligned_cols=258 Identities=21% Similarity=0.333 Sum_probs=183.3
Q ss_pred CCCCCCCCCCCC----ChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCccccccc
Q 005667 255 CWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (684)
Q Consensus 255 ~~~g~p~~~~~~----~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 330 (684)
.|+++|...... ....+++.|.+.|+||+.+++.|..++... ..+...+.+| .
T Consensus 465 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~------------~~~~~~~~~p-----------~ 521 (758)
T 3pxi_A 465 SWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA------------RAGLKDPKRP-----------I 521 (758)
T ss_dssp TTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH------------TTTCSCTTSC-----------S
T ss_pred HHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH------------HcccCCCCCC-----------c
Confidence 577777655332 223478889999999999999999988621 1222222222 3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
.++||+||||||||++|+++|+.+ +.+|+.++|+++.+. +... ...+...+.. ..++|||||||+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~~~-------~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKVRR-------KPYSVVLLDAIEKA 591 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHHHH-------CSSSEEEEECGGGS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhHHHHh-------CCCeEEEEeCcccc
Confidence 589999999999999999999998 678999999998743 2222 2233333333 35689999999999
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
+++ +++.||++||+..+ ++..++ .++..+++||+|+|...-
T Consensus 592 ~~~--------------~~~~Ll~~le~g~~--------~~~~g~--~~~~~~~~iI~ttn~~~~--------------- 632 (758)
T 3pxi_A 592 HPD--------------VFNILLQVLEDGRL--------TDSKGR--TVDFRNTILIMTSNVGAS--------------- 632 (758)
T ss_dssp CHH--------------HHHHHHHHHHHSBC--------C-------CCBCTTCEEEEEESSSTT---------------
T ss_pred CHH--------------HHHHHHHHhccCeE--------EcCCCC--EeccCCeEEEEeCCCChh---------------
Confidence 887 99999999993322 222332 567889999999884210
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhC
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~ 567 (684)
. ...+ .+.++..|+|+|++||+.+|.|++|+.+++.+|+...+..+.++ +...
T Consensus 633 -~----------------~~~~------~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~----~~~~ 685 (758)
T 3pxi_A 633 -E----------------KDKV------MGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKR----LKEQ 685 (758)
T ss_dssp -C----------------CHHH------HHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHH----HHTT
T ss_pred -h----------------HHHH------HHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHH----HHhC
Confidence 0 0001 11233458999999999999999999999999999876666554 4445
Q ss_pred CcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005667 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 568 gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+..+.++++++++|++.+|+|++|+|+|+++|++.+...+.+..
T Consensus 686 ~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 686 DLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp TCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred CCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999887643
No 7
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.94 E-value=1.9e-25 Score=232.05 Aligned_cols=260 Identities=25% Similarity=0.358 Sum_probs=184.5
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005667 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAr 348 (684)
.++++.|.+.++||+.+++.|..++..... +...+.+ |..++||+||||||||++|+
T Consensus 9 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~------------~~~~~~~-----------~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 9 LRLEEELHKRVVGQDEAIRAVADAIRRARA------------GLKDPNR-----------PIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp HTHHHHHHTTCCSCHHHHHHHHHHHHHHHH------------TCSCTTS-----------CSEEEEEESCSSSSHHHHHH
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhc------------CCCCCCC-----------CceEEEEECCCCcCHHHHHH
Confidence 358889999999999999999998863211 1112222 23689999999999999999
Q ss_pred HHHHHh---CCCEEEEecccccc-----------ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 349 TLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 349 aIA~~l---~~pfv~v~~s~l~~-----------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++|+.+ +.+++.++|+.+.. .+++|......+...+.. +.++||||||||++...
T Consensus 66 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~vl~lDEi~~l~~~---- 134 (311)
T 4fcw_A 66 TLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-------RPYSVILFDAIEKAHPD---- 134 (311)
T ss_dssp HHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH-------CSSEEEEEETGGGSCHH----
T ss_pred HHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh-------CCCeEEEEeChhhcCHH----
Confidence 999998 56799999987753 223343322333333332 34589999999999887
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
+++.|+++|++..+. +..+ ..++.++++||+|+|... + .+......
T Consensus 135 ----------~~~~Ll~~le~~~~~--------~~~~--~~~~~~~~iiI~ttn~~~-~-~i~~~~~~------------ 180 (311)
T 4fcw_A 135 ----------VFNILLQMLDDGRLT--------DSHG--RTVDFRNTVIIMTSNLGS-P-LILEGLQK------------ 180 (311)
T ss_dssp ----------HHHHHHHHHHHSEEE--------CTTS--CEEECTTEEEEEEESTTH-H-HHHTTTTS------------
T ss_pred ----------HHHHHHHHHhcCEEE--------cCCC--CEEECCCcEEEEecccCH-H-HHHhhhcc------------
Confidence 999999999944332 2222 378889999999988531 1 11111000
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
...++. +.+.+. +.+...|.|+|++||+.++.|.|++.+++.+|+...+..+.++ +...+..+.++
T Consensus 181 ----~~~~~~----l~~~~~--~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~----~~~~~~~~~~~ 246 (311)
T 4fcw_A 181 ----GWPYER----IRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRAR----LAEKRISLELT 246 (311)
T ss_dssp ----CCCSST----HHHHTH--HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHH----HHTTTCEEEEC
T ss_pred ----cccHHH----HHHHHH--HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHH----HHhCCcEEEeC
Confidence 000011 111111 1224458899999999999999999999999999866665544 44456788999
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcC
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
++++++|++++|++++|+|+|+++|++++..++.+.
T Consensus 247 ~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 247 EAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp HHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 999999999888779999999999999999887654
No 8
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.93 E-value=1.4e-25 Score=266.16 Aligned_cols=275 Identities=24% Similarity=0.357 Sum_probs=192.9
Q ss_pred CCCCCCCCCCCCCChHH----HHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccc
Q 005667 254 GCWGGSNLGNKFPTPKE----ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~p~~~~~~~~~e----l~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 329 (684)
..|+++|..+......+ +.+.+.+.|+||+.+++.|..++.. . ..+..++++|
T Consensus 531 ~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~----~--------~~g~~~~~~p----------- 587 (854)
T 1qvr_A 531 SRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRR----A--------RAGLKDPNRP----------- 587 (854)
T ss_dssp HTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHH----H--------GGGCSCSSSC-----------
T ss_pred HHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHH----H--------hcccCCCCCC-----------
Confidence 35777766554443332 5667777899999999999998851 1 1222233332
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc-----------ccccccchHHHHHHHHhhcchhhHhhc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~-----------~gyvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
..++||+||||||||++|++|++.+ +.+|+.++|+++.+ ++|+|++..+.+...+... .
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~-------~ 660 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR-------P 660 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHC-------S
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhC-------C
Confidence 3699999999999999999999998 77999999998753 3466766434444444433 4
Q ss_pred CCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHH
Q 005667 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~ 475 (684)
++|||||||++++++ +++.||++||... .++..+ ..++++|+++|+|+|... +.+
T Consensus 661 ~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~--------~~~~~g--~~vd~~~~iiI~tsn~~~-~~~ 715 (854)
T 1qvr_A 661 YSVILFDEIEKAHPD--------------VFNILLQILDDGR--------LTDSHG--RTVDFRNTVIILTSNLGS-PLI 715 (854)
T ss_dssp SEEEEESSGGGSCHH--------------HHHHHHHHHTTTE--------ECCSSS--CCEECTTEEEEEECCTTH-HHH
T ss_pred CeEEEEecccccCHH--------------HHHHHHHHhccCc--------eECCCC--CEeccCCeEEEEecCcCh-HHH
Confidence 589999999999887 9999999999433 233333 378999999999988531 111
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHH
Q 005667 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~ 555 (684)
.... +++ ..+.. +.+.+. +..+..|+|+|++||+.++.|.||+.+++..|+...+..
T Consensus 716 ~~~~------~~~-----------~~~~~----l~~~v~--~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 716 LEGL------QKG-----------WPYER----IRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp HHHH------HTT-----------CCHHH----HHHHHH--HHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred hhhc------ccc-----------cchHH----HHHHHH--HHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 1100 000 00111 111110 123567999999999999999999999999999987666
Q ss_pred HHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcC
Q 005667 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 556 L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
+.++ +...++.+.++++++++|++++|++++|+|+|+++|++.+...+.+.
T Consensus 773 ~~~~----~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 773 LRAR----LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp HHHH----HHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred HHHH----HHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 6554 44456778999999999999999999999999999999999887664
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-23 Score=229.22 Aligned_cols=221 Identities=22% Similarity=0.303 Sum_probs=169.5
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|++++|+.|.++|..++++.....+ .| ..+++++||+||||||||++|+++|++++.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~----~g---------------i~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFES----LG---------------IAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHH----HT---------------CCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHh----CC---------------CCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 3899999999999999876654322111 00 1135899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|++ +..++.+|..+.. ..++||||||||.+...|...+.+.+....++.+.||..|||..
T Consensus 210 f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~----~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 210 FIRVSGAELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp EEEEEGGGGS-CSSTTHH-HHHHHHHHHHHHH----TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ceEEEhHHhh-ccccchH-HHHHHHHHHHHHH----hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 9999999998 7799998 7899999987653 57899999999999988776555555555668899999999521
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+|+|..+
T Consensus 284 -------------------~~~~V~vIaATNrpd---------------------------------------------- 298 (405)
T 4b4t_J 284 -------------------TSKNIKIIMATNRLD---------------------------------------------- 298 (405)
T ss_dssp -------------------CCCCEEEEEEESCSS----------------------------------------------
T ss_pred -------------------CCCCeEEEeccCChh----------------------------------------------
Confidence 124578888887543
Q ss_pred HHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH-HHHHHHHHhcCCCCCChHH
Q 005667 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 l~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e-eAl~~La~~ay~~~~GAR~ 594 (684)
.+.|+|+. |||..|.++.++.++..+|++..+ + .+.+++ .-++.|++. ..++.+..
T Consensus 299 ----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~-----------~----~~~l~~dvdl~~lA~~--t~G~SGAD 357 (405)
T 4b4t_J 299 ----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS-----------R----KMNLTRGINLRKVAEK--MNGCSGAD 357 (405)
T ss_dssp ----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-----------T----TSBCCSSCCHHHHHHH--CCSCCHHH
T ss_pred ----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh-----------c----CCCCCccCCHHHHHHH--CCCCCHHH
Confidence 14466664 999999999999999999997532 1 112222 236778884 56777899
Q ss_pred HHHHHHHHHHHHHhc
Q 005667 595 LRSLLENILMDAMYE 609 (684)
Q Consensus 595 Lr~iIe~~l~~al~e 609 (684)
|++++..+...++.+
T Consensus 358 i~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 358 VKGVCTEAGMYALRE 372 (405)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999888777654
No 10
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=8e-23 Score=224.08 Aligned_cols=218 Identities=21% Similarity=0.307 Sum_probs=168.4
Q ss_pred ccChHHHHHHHHHHHHhhHHh--HhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 279 VIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~r--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
|.|++++|+.|.+.|..++++ .+..... .+++++||+||||||||++|+++|.+++.
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---------------------~~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGI---------------------KPPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---------------------CCCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---------------------CCCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 899999999999999866553 2222111 13589999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.++++++. ..|+|++ +..++.+|..+.. ..++||||||||.+...|...+.+.+....++...||..|||.
T Consensus 243 ~fi~v~~s~l~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 243 TFLRIVGSELI-QKYLGDG-PRLCRQIFKVAGE----NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp EEEEEESGGGC-CSSSSHH-HHHHHHHHHHHHH----TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEEHHHhh-hccCchH-HHHHHHHHHHHHh----cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 99999999998 6799998 7889999987653 5789999999999999887655555555556788888888842
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccch
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
. ...++++|+|+|..+
T Consensus 317 ~-------------------~~~~ViVIaATNrpd--------------------------------------------- 332 (437)
T 4b4t_I 317 D-------------------DRGDVKVIMATNKIE--------------------------------------------- 332 (437)
T ss_dssp C-------------------CSSSEEEEEEESCST---------------------------------------------
T ss_pred C-------------------CCCCEEEEEeCCChh---------------------------------------------
Confidence 1 234588888887432
Q ss_pred HHHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHH-HHHHHHHhcCCCCCChH
Q 005667 517 DLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGAR 593 (684)
Q Consensus 517 dl~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ee-Al~~La~~ay~~~~GAR 593 (684)
.+.|+|+. |||..|.|+.++.++..+|++..+ + .+.++++ -++.|++. ..++..+
T Consensus 333 -----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l-----------~----~~~l~~dvdl~~LA~~--T~GfSGA 390 (437)
T 4b4t_I 333 -----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHT-----------S----KMNLSEDVNLETLVTT--KDDLSGA 390 (437)
T ss_dssp -----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH-----------T----TSCBCSCCCHHHHHHH--CCSCCHH
T ss_pred -----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh-----------c----CCCCCCcCCHHHHHHh--CCCCCHH
Confidence 15577775 999999999999999999997532 1 1222222 26778874 5677789
Q ss_pred HHHHHHHHHHHHHHhc
Q 005667 594 GLRSLLENILMDAMYE 609 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e 609 (684)
+|++++..+...++.+
T Consensus 391 DI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRE 406 (437)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999888777654
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-22 Score=223.97 Aligned_cols=221 Identities=22% Similarity=0.270 Sum_probs=166.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|.|.+++|+.|.+.|..++++.....+ .| ..+++++||+||||||||++|+++|..++.+|
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~----~g---------------~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f 243 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKD----MG---------------IRAPKGALMYGPPGTGKTLLARACAAQTNATF 243 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHH----HC---------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHh----CC---------------CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 899999999999999866653211111 00 01358999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|+|+. +..++.+|..+.. ..++||||||||.+...|...+.+++.....+...||..|||..
T Consensus 244 ~~v~~s~l~-~~~vGes-e~~ir~lF~~A~~----~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~- 316 (434)
T 4b4t_M 244 LKLAAPQLV-QMYIGEG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS- 316 (434)
T ss_dssp EEEEGGGGC-SSCSSHH-HHHHHHHHHHHHH----HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-
T ss_pred EEEehhhhh-hcccchH-HHHHHHHHHHHHh----cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-
Confidence 999999998 7799998 7889999987653 57899999999999988765544444444557788999998521
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+|+|..+
T Consensus 317 ------------------~~~~ViVIaaTNrp~----------------------------------------------- 331 (434)
T 4b4t_M 317 ------------------SDDRVKVLAATNRVD----------------------------------------------- 331 (434)
T ss_dssp ------------------SSCSSEEEEECSSCC-----------------------------------------------
T ss_pred ------------------CCCCEEEEEeCCCch-----------------------------------------------
Confidence 123578888877432
Q ss_pred HHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 ~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.|+|+. |||..|.|+.++.++..+|++..+.. ....-.+ -++.|++. ..++.++.|+
T Consensus 332 ---~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----------~~~~~dv---dl~~lA~~--t~G~sGADi~ 392 (434)
T 4b4t_M 332 ---VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK-----------MTTDDDI---NWQELARS--TDEFNGAQLK 392 (434)
T ss_dssp ---CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH-----------SCBCSCC---CHHHHHHH--CSSCCHHHHH
T ss_pred ---hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC-----------CCCCCcC---CHHHHHHh--CCCCCHHHHH
Confidence 25577865 99999999999999999999753221 1111112 26777874 5677789999
Q ss_pred HHHHHHHHHHHhc
Q 005667 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
+++..+...++.+
T Consensus 393 ~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 393 AVTVEAGMIALRN 405 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999887777654
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.3e-22 Score=220.70 Aligned_cols=221 Identities=21% Similarity=0.266 Sum_probs=167.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|.|++++|+.|.++|..++++.....+ .| ..|++++||+||||||||++|+++|+.++.+|
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~----~g---------------~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQR----VG---------------IKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHH----HC---------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHh----CC---------------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 799999999999999876654322111 00 12358999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. +.|+|++ +..++.+|..+.. ..++||||||||.+...|...+.+.+.....+.+.||..|||..
T Consensus 244 ~~v~~s~l~-sk~~Ges-e~~ir~~F~~A~~----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~- 316 (437)
T 4b4t_L 244 IFSPASGIV-DKYIGES-ARIIREMFAYAKE----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD- 316 (437)
T ss_dssp EEEEGGGTC-CSSSSHH-HHHHHHHHHHHHH----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-
T ss_pred EEEehhhhc-cccchHH-HHHHHHHHHHHHh----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-
Confidence 999999998 6799998 7888999887653 57899999999999998766555555555568889999999521
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+|+|..+
T Consensus 317 ------------------~~~~vivI~ATNrp~----------------------------------------------- 331 (437)
T 4b4t_L 317 ------------------NLGQTKIIMATNRPD----------------------------------------------- 331 (437)
T ss_dssp ------------------CTTSSEEEEEESSTT-----------------------------------------------
T ss_pred ------------------CCCCeEEEEecCCch-----------------------------------------------
Confidence 124577888877432
Q ss_pred HHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 ~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.|+|+ +|||..|.|+.++.++..+|++..+.. ....-.+ -++.|++ ...++.++.|+
T Consensus 332 ---~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----------~~~~~d~---dl~~lA~--~t~G~sGADi~ 392 (437)
T 4b4t_L 332 ---TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK-----------VKKTGEF---DFEAAVK--MSDGFNGADIR 392 (437)
T ss_dssp ---SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-----------SCBCSCC---CHHHHHH--TCCSCCHHHHH
T ss_pred ---hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-----------CCCCccc---CHHHHHH--hCCCCCHHHHH
Confidence 1446665 569999999999999999999753211 1111112 2677787 46778889999
Q ss_pred HHHHHHHHHHHhc
Q 005667 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
+++..+...++.+
T Consensus 393 ~l~~eA~~~air~ 405 (437)
T 4b4t_L 393 NCATEAGFFAIRD 405 (437)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999887777654
No 13
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.3e-22 Score=218.62 Aligned_cols=221 Identities=19% Similarity=0.291 Sum_probs=166.7
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|++++|+.|.+.|..+.++.....+ .| ..+++++||+||||||||++|+++|+.++.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~----~g---------------~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQ----IG---------------IDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHH----HC---------------CCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHh----CC---------------CCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4899999999999999866553211111 01 0135899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|+. +..++.+|..+.. ..++||||||+|.+...|...+.+.+....++.+.||..|||..
T Consensus 234 ~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A~~----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 234 FIRVNGSEFV-HKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp EEEEEGGGTC-CSSCSHH-HHHHHHHHHHHHH----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred eEEEecchhh-ccccchh-HHHHHHHHHHHHH----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 9999999998 6799998 7889999987653 57899999999999998766555555555678999999999521
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+|+|..+
T Consensus 308 -------------------~~~~v~vI~aTN~~~---------------------------------------------- 322 (428)
T 4b4t_K 308 -------------------QSTNVKVIMATNRAD---------------------------------------------- 322 (428)
T ss_dssp -------------------SSCSEEEEEEESCSS----------------------------------------------
T ss_pred -------------------CCCCEEEEEecCChh----------------------------------------------
Confidence 234578888887543
Q ss_pred HHHcCCCcccc--cccceEEEcC-CCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHH-HHHHHHHhcCCCCCChH
Q 005667 518 LIAYGLIPEFV--GRFPVLVSLL-ALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGAR 593 (684)
Q Consensus 518 l~~~~f~PeLl--~R~d~iI~f~-pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ee-Al~~La~~ay~~~~GAR 593 (684)
.+.|+|+ +|||..|.|+ .++.++...|++..+. .+.++++ -++.|++. ..++.++
T Consensus 323 ----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~---------------~~~l~~~~dl~~lA~~--t~G~sga 381 (428)
T 4b4t_K 323 ----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS---------------KMSLAPEADLDSLIIR--NDSLSGA 381 (428)
T ss_dssp ----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH---------------SSCBCTTCCHHHHHHH--TTTCCHH
T ss_pred ----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc---------------CCCCCcccCHHHHHHH--CCCCCHH
Confidence 1446665 4999999996 5788888888875321 1222222 36778874 5677789
Q ss_pred HHHHHHHHHHHHHHhc
Q 005667 594 GLRSLLENILMDAMYE 609 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e 609 (684)
.|++++..+...++.+
T Consensus 382 di~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 382 VIAAIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC
Confidence 9999999888777654
No 14
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.3e-22 Score=217.83 Aligned_cols=222 Identities=21% Similarity=0.226 Sum_probs=166.5
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|++++|+.|.++|..++++.....+ .| ..+++++||+||||||||++|+++|++++.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~----~G---------------i~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFAT----LG---------------IDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHH----HT---------------CCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHH----CC---------------CCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 4899999999999999765553221111 01 0235899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|++ +..++.+|..+.. ..++||||||+|.+...|...+.+.+.....+...||..|+|..
T Consensus 271 fi~vs~s~L~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 271 FIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp EEEEEGGGGC-CCSSSHH-HHHHHHHHHHHHH----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred eEEEEhHHhh-cccCCHH-HHHHHHHHHHHHh----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 9999999998 6799998 7889999987653 57899999999999988766554445455567788888888421
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+|+|..+
T Consensus 345 -------------------~~~~ViVIaATNrpd---------------------------------------------- 359 (467)
T 4b4t_H 345 -------------------PRGNIKVMFATNRPN---------------------------------------------- 359 (467)
T ss_dssp -------------------CTTTEEEEEECSCTT----------------------------------------------
T ss_pred -------------------CCCcEEEEeCCCCcc----------------------------------------------
Confidence 234578888887432
Q ss_pred HHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHH
Q 005667 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 l~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~L 595 (684)
.+.|+|+. |||..|.|+.++.++..+|++..+ +.....-.+ -++.|++. ..++.++.|
T Consensus 360 ----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l-----------~~~~l~~dv---dl~~LA~~--T~GfSGADI 419 (467)
T 4b4t_H 360 ----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS-----------KSMSVERGI---RWELISRL--CPNSTGAEL 419 (467)
T ss_dssp ----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH-----------TTSCBCSSC---CHHHHHHH--CCSCCHHHH
T ss_pred ----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHh-----------cCCCCCCCC---CHHHHHHH--CCCCCHHHH
Confidence 13466654 999999999999999999997532 111111122 25677774 567778999
Q ss_pred HHHHHHHHHHHHhc
Q 005667 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
++++..+...++.+
T Consensus 420 ~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 420 RSVCTEAGMFAIRA 433 (467)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888777654
No 15
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=3e-21 Score=200.43 Aligned_cols=236 Identities=18% Similarity=0.266 Sum_probs=169.0
Q ss_pred CChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005667 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~ 345 (684)
....++...|++.|+|++.+|+.|.+.+...... ... ...+.... .+..++||+||||||||+
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~---~~~--~~~g~~~~------------~~~~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVE---RAR--QKLGLAHE------------TPTLHMSFTGNPGTGKTT 82 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH---HHH--HHHTCCSS------------CCCCEEEEEECTTSSHHH
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhH---HHH--HHcCCCCC------------CCCceEEEECCCCCCHHH
Confidence 3456688899988999999999999888633211 000 01111111 123789999999999999
Q ss_pred HHHHHHHHh-------CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCC
Q 005667 346 LAKTLARYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 346 LAraIA~~l-------~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~ 418 (684)
+|+++|+.+ ..+++.++++++. ..++|.. ...+..++.. +.++||||||+|.+...+..
T Consensus 83 la~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~----- 148 (309)
T 3syl_A 83 VALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEVLKR-------AMGGVLFIDEAYYLYRPDNE----- 148 (309)
T ss_dssp HHHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH-HHHHHHHHHH-------HTTSEEEEETGGGSCCCC-------
T ss_pred HHHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc-HHHHHHHHHh-------cCCCEEEEEChhhhccCCCc-----
Confidence 999999988 3489999999887 5677876 4445555544 35689999999999754221
Q ss_pred CCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccC
Q 005667 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~ 498 (684)
+.....+++.|++.|+.. ..++++|++++...++...
T Consensus 149 ~~~~~~~~~~Ll~~l~~~---------------------~~~~~~i~~~~~~~~~~~~---------------------- 185 (309)
T 3syl_A 149 RDYGQEAIEILLQVMENN---------------------RDDLVVILAGYADRMENFF---------------------- 185 (309)
T ss_dssp -CCTHHHHHHHHHHHHHC---------------------TTTCEEEEEECHHHHHHHH----------------------
T ss_pred ccccHHHHHHHHHHHhcC---------------------CCCEEEEEeCChHHHHHHH----------------------
Confidence 223345999999999821 1346778877632211110
Q ss_pred CCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHH
Q 005667 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 499 ~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl 578 (684)
.+.|+|++|++.++.|++++.+++.+|+...+... .+.++++++
T Consensus 186 -----------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~-------------~~~~~~~~~ 229 (309)
T 3syl_A 186 -----------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ-------------NYQMTPEAE 229 (309)
T ss_dssp -----------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT-------------TCEECHHHH
T ss_pred -----------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc-------------CCCCCHHHH
Confidence 13489999999999999999999999998743321 567999999
Q ss_pred HHHHHhcC-----CCCCChHHHHHHHHHHHHHHHhcCC
Q 005667 579 RLIAKKAI-----SKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 579 ~~La~~ay-----~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.+++..- .|.+++|.|++++++++..+...+.
T Consensus 230 ~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 230 TALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99998632 6778899999999999987665543
No 16
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.86 E-value=2.4e-21 Score=219.54 Aligned_cols=242 Identities=21% Similarity=0.260 Sum_probs=163.9
Q ss_pred ChHHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHH
Q 005667 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (684)
Q Consensus 267 ~~~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~L 346 (684)
...++.+.|++.++|++++++.+...+..... ....+..++||+||||||||++
T Consensus 71 ~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~--------------------------~~~~~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 71 DLKEAGRLLDEEHHGLEKVKERILEYLAVQKL--------------------------TKSLKGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHH--------------------------SSSCCSCEEEEESSSSSSHHHH
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh--------------------------cccCCCCEEEEECCCCCCHHHH
Confidence 34456778888899999999999776642111 0011347999999999999999
Q ss_pred HHHHHHHhCCCEEEEecccccc--------ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCC
Q 005667 347 AKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 347 AraIA~~l~~pfv~v~~s~l~~--------~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~ 418 (684)
|++||+.++.++..+++..+.. ..|+|+. .+.+...+..+. ..++||||||||++..++..
T Consensus 125 ar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~~----- 193 (543)
T 3m6a_A 125 AKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFRG----- 193 (543)
T ss_dssp HHHHHHHHTCEEEEECCCC---------------------CHHHHHHTTC-----SSSEEEEEEESSSCC----------
T ss_pred HHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhcc-----
Confidence 9999999999999999987542 1345554 233334444432 24569999999999876321
Q ss_pred CCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccC
Q 005667 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~ 498 (684)
..++.||++||+... ......+....++..+++||+|+|..+
T Consensus 194 -----~~~~~LL~~ld~~~~------~~~~~~~~~~~~~~~~v~iI~ttN~~~--------------------------- 235 (543)
T 3m6a_A 194 -----DPSSAMLEVLDPEQN------SSFSDHYIEETFDLSKVLFIATANNLA--------------------------- 235 (543)
T ss_dssp ---------CCGGGTCTTTT------TBCCCSSSCCCCBCSSCEEEEECSSTT---------------------------
T ss_pred -----CHHHHHHHHHhhhhc------ceeecccCCeeecccceEEEeccCccc---------------------------
Confidence 178899999983221 111222223356778899999988421
Q ss_pred CCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHH
Q 005667 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 499 ~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl 578 (684)
.+.|+|++|++ ++.|++++.+++.+|+...+ ..++.+........+.++++++
T Consensus 236 -----------------------~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l---~~~~~~~~~~~~~~i~i~~~~l 288 (543)
T 3m6a_A 236 -----------------------TIPGPLRDRME-IINIAGYTEIEKLEIVKDHL---LPKQIKEHGLKKSNLQLRDQAI 288 (543)
T ss_dssp -----------------------TSCHHHHHHEE-EEECCCCCHHHHHHHHHHTH---HHHHHHHTTCCGGGCEECHHHH
T ss_pred -----------------------cCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHH---HHHHHHHcCCCcccccCCHHHH
Confidence 26799999996 78999999999999998754 3333332222333678999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005667 579 RLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 579 ~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.|++. |+|+.|+|+|++.|++++..+..++.
T Consensus 289 ~~l~~~-~~~~~~vR~L~~~i~~~~~~aa~~~~ 320 (543)
T 3m6a_A 289 LDIIRY-YTREAGVRSLERQLAAICRKAAKAIV 320 (543)
T ss_dssp HHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CChhhchhHHHHHHHHHHHHHHHHHH
Confidence 999984 89999999999999999988766543
No 17
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.85 E-value=2e-21 Score=204.67 Aligned_cols=272 Identities=17% Similarity=0.242 Sum_probs=173.9
Q ss_pred ccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005667 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l-- 354 (684)
+.++|++.+++.+...+. +.. ....++||+||||||||++|++|++..
T Consensus 2 ~~iig~s~~~~~~~~~~~----~~a--------------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIA----MVA--------------------------PSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp -CCCCCSHHHHHHHHHHH----HHC--------------------------STTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCcEECCHHHHHHHHHHH----HHh--------------------------CCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 347999999999888775 110 012799999999999999999999976
Q ss_pred -CCCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHH
Q 005667 355 -NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 355 -~~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+.||+.++|+.+.. +.++|+..+. +........+.++.+.+++||||||+.++.. +|..|
T Consensus 52 ~~~~~v~v~~~~~~~~l~~~~lfg~~~g~-~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~L 116 (304)
T 1ojl_A 52 SDRPLVTLNCAALNESLLESELFGHEKGA-FTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRL 116 (304)
T ss_dssp SSSCCCEEECSSCCHHHHHHHHTCCCSSC-CC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHH
T ss_pred cCCCeEEEeCCCCChHHHHHHhcCccccc-cCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHH
Confidence 57899999987742 2223322110 0111112234456677899999999999887 99999
Q ss_pred HHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHH
Q 005667 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~l 509 (684)
+++|+...+. ..|... ....++.+|+++|. ++++.+..
T Consensus 117 l~~l~~~~~~--~~g~~~--------~~~~~~riI~atn~-~l~~~v~~------------------------------- 154 (304)
T 1ojl_A 117 LRAIQEREVQ--RVGSNQ--------TISVDVRLIAATHR-DLAEEVSA------------------------------- 154 (304)
T ss_dssp HHHHHSSBCC--BTTBCC--------CCBCCCEEEEEESS-CHHHHHHH-------------------------------
T ss_pred HHHHhcCEee--ecCCcc--------cccCCeEEEEecCc-cHHHHHHh-------------------------------
Confidence 9999843321 112111 11234667777763 34444332
Q ss_pred hhhccchHHHHcCCCcccccccce-EEEcCCCC--HHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcC
Q 005667 510 METVESSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 510 l~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs--~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay 586 (684)
..|+++|++||.. .+.++||. .+|+..++...+..+..++ . .....+++++++.|.. |
T Consensus 155 -----------g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~----~--~~~~~~s~~a~~~L~~--~ 215 (304)
T 1ojl_A 155 -----------GRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERN----R--KVVKGFTPQAMDLLIH--Y 215 (304)
T ss_dssp -----------TSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHT----T--CCCCCBCHHHHHHHHH--C
T ss_pred -----------CCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHh----c--cCccCCCHHHHHHHHc--C
Confidence 2377899999964 48899998 6889888887554443321 1 1235799999999998 7
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccEEEecccccCcccCCCcceEEcCCChHHH-HHHHHhhhhhhhccc
Q 005667 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDR-YLAQHKRKDLETNVA 665 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~v~vde~~v~~~~~g~~~~i~~~~g~l~~-~l~~~~~~~~~~~~~ 665 (684)
.|++++|+|++++++++..+-.. .|+.+.+...-...... ....+.. .+++.|++.|...++
T Consensus 216 ~wpGnvReL~~~l~~~~~~~~~~--------------~i~~~~l~~~~~~~~~~---~~~~l~~~~~~~~e~~~i~~~l~ 278 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLLTGE--------------YISERELPLAIAATPIK---TEYSGEIQPLVDVEKEVILAALE 278 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHCCSS--------------SBCGGGSCGGGC----------CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC--------------cccHHhhhhhhccCCCc---cCCCcchhhHHHHHHHHHHHHHH
Confidence 89999999999999987642111 12222221110000000 0111222 467888889988888
Q ss_pred cCCCCC
Q 005667 666 GADGEP 671 (684)
Q Consensus 666 ~~~~~~ 671 (684)
.++|+.
T Consensus 279 ~~~gn~ 284 (304)
T 1ojl_A 279 KTGGNK 284 (304)
T ss_dssp TTTTCH
T ss_pred HcCCCH
Confidence 888875
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.1e-20 Score=195.26 Aligned_cols=221 Identities=20% Similarity=0.290 Sum_probs=166.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-CCC
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NVP 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l-~~p 357 (684)
|+|++.+|+.|.+++..+.+...... ....+++++||+||||||||++|+++|+.+ +.+
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~--------------------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 73 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFT--------------------GKRTPWRGILLFGPPGTGKSYLAKAVATEANNST 73 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSC--------------------TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCE
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHh--------------------CCCCCCceEEEECCCCccHHHHHHHHHHHcCCCc
Confidence 79999999999999975554311100 011235899999999999999999999999 889
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|+. +..++.+|..+. ...++||||||||.+...+... .....+++++.||..|++..
T Consensus 74 ~~~i~~~~l~-~~~~g~~-~~~~~~lf~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 74 FFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp EEEEECCSSC-CSSCCSC-HHHHHHHHHHHH----HTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSS
T ss_pred EEEEEhHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhccc
Confidence 9999999987 5688887 677888877643 3567899999999998765432 12234458899999998421
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
....++++|+++|..+
T Consensus 145 ------------------~~~~~v~vI~atn~~~---------------------------------------------- 160 (322)
T 1xwi_A 145 ------------------VDNDGILVLGATNIPW---------------------------------------------- 160 (322)
T ss_dssp ------------------SCCTTEEEEEEESCTT----------------------------------------------
T ss_pred ------------------ccCCCEEEEEecCCcc----------------------------------------------
Confidence 1224577887776321
Q ss_pred HHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHH
Q 005667 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 l~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~ 597 (684)
.+.|.|++||+..+.++.++.++..+|++..+ . .....+++..++.|++ ...++..+.|+.
T Consensus 161 ----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-----------~--~~~~~l~~~~l~~la~--~t~G~sgadl~~ 221 (322)
T 1xwi_A 161 ----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL-----------G--TTQNSLTEADFRELGR--KTDGYSGADISI 221 (322)
T ss_dssp ----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-----------T--TCCBCCCHHHHHHHHH--TCTTCCHHHHHH
T ss_pred ----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH-----------h--cCCCCCCHHHHHHHHH--HcCCCCHHHHHH
Confidence 14578888999999999999999999987531 1 2245578999999999 467777899999
Q ss_pred HHHHHHHHHHhcCC
Q 005667 598 LLENILMDAMYEIP 611 (684)
Q Consensus 598 iIe~~l~~al~e~~ 611 (684)
+++.+...++.+..
T Consensus 222 l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 222 IVRDALMQPVRKVQ 235 (322)
T ss_dssp HHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888876643
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.83 E-value=3.8e-20 Score=195.50 Aligned_cols=220 Identities=21% Similarity=0.292 Sum_probs=163.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++.+|+.|.+++..+........ ....++.++||+||||||||++|+++|+.++.+|
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~--------------------~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 79 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFK--------------------GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 79 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCC--------------------TTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHh--------------------cCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE
Confidence 79999999999999875443211000 0112358999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...+... .....+++++.|+..|++...
T Consensus 80 ~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 80 FSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp EEEEHHHHH-TTTGGGH-HHHHHHHHHHHH----HTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGT
T ss_pred EEEchHHHh-hcccchH-HHHHHHHHHHHH----hcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccc
Confidence 999999887 5688876 677778777653 3467899999999998865432 222345589999999984210
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+|+|..+
T Consensus 151 ------------------~~~~v~vi~atn~~~----------------------------------------------- 165 (322)
T 3eie_A 151 ------------------DSQGVLVLGATNIPW----------------------------------------------- 165 (322)
T ss_dssp ------------------SCCCEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------cCCceEEEEecCChh-----------------------------------------------
Confidence 123477777766321
Q ss_pred HHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005667 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 ~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~i 598 (684)
.+.|.+++||+..+.++.++.++..+|++..+ ......++++.++.|++ ...++..+.|+++
T Consensus 166 ---~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~-------------~~~~~~~~~~~l~~la~--~t~g~sg~di~~l 227 (322)
T 3eie_A 166 ---QLDSAIRRRFERRIYIPLPDLAARTTMFEINV-------------GDTPCVLTKEDYRTLGA--MTEGYSGSDIAVV 227 (322)
T ss_dssp ---GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-------------TTCCCCCCHHHHHHHHH--TTTTCCHHHHHHH
T ss_pred ---hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHh-------------ccCCCCCCHHHHHHHHH--HcCCCCHHHHHHH
Confidence 14578888999999999999999999988522 12255678999999999 4567778999999
Q ss_pred HHHHHHHHHhcC
Q 005667 599 LENILMDAMYEI 610 (684)
Q Consensus 599 Ie~~l~~al~e~ 610 (684)
++.....++.+.
T Consensus 228 ~~~a~~~a~r~~ 239 (322)
T 3eie_A 228 VKDALMQPIRKI 239 (322)
T ss_dssp HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887777654
No 20
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.82 E-value=9.8e-20 Score=186.01 Aligned_cols=221 Identities=17% Similarity=0.267 Sum_probs=146.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~--- 355 (684)
++|++.+++.+...+.. .. ....++||+||||||||++|+++++.+.
T Consensus 8 ~ig~~~~~~~~~~~~~~----~~--------------------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~ 57 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSH----LA--------------------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQ 57 (265)
T ss_dssp --CCCHHHHHHHHHHHH----HT--------------------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTT
T ss_pred ceeCCHHHHHHHHHHHH----Hh--------------------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccC
Confidence 58999999988877741 10 0126899999999999999999999874
Q ss_pred CCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHH
Q 005667 356 VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.+|+.++|+.+.. ..++|...+ ..........+.+..+.+++||||||+.+..+ +|+.|++
T Consensus 58 ~~~~~v~~~~~~~~~~~~~l~g~~~~-~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~~Ll~ 122 (265)
T 2bjv_A 58 GPFISLNCAALNENLLDSELFGHEAG-AFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQEKLLR 122 (265)
T ss_dssp SCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHHHHHH
T ss_pred CCeEEEecCCCChhHHHHHhcCCccc-ccccccccccchhhhcCCcEEEEechHhcCHH--------------HHHHHHH
Confidence 6899999987742 112222111 11111111223455567899999999999887 9999999
Q ss_pred HHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhh
Q 005667 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~ 511 (684)
+|+...+. ..|.. .....++.+|+|+|. ++++.+.
T Consensus 123 ~l~~~~~~--~~g~~--------~~~~~~~~iI~atn~-~~~~~~~---------------------------------- 157 (265)
T 2bjv_A 123 VIEYGELE--RVGGS--------QPLQVNVRLVCATNA-DLPAMVN---------------------------------- 157 (265)
T ss_dssp HHHHCEEC--CCCC----------CEECCCEEEEEESS-CHHHHHH----------------------------------
T ss_pred HHHhCCee--cCCCc--------ccccCCeEEEEecCc-CHHHHHH----------------------------------
Confidence 99833221 01110 122345677887773 2222221
Q ss_pred hccchHHHHcCCCcccccccc-eEEEcCCCCH--HHHHHHHhchHHHHHHHHHHHHhhCCcc--eecCHHHHHHHHHhcC
Q 005667 512 TVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVK--LHFTENALRLIAKKAI 586 (684)
Q Consensus 512 ~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~--eel~~Il~~~l~~L~kqy~~~l~~~gi~--l~i~eeAl~~La~~ay 586 (684)
+..|.++|++||+ ..+.++++++ +|+..++...+..+.++ .+.. ..+++++++.|.. |
T Consensus 158 --------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~-------~~~~~~~~~~~~a~~~L~~--~ 220 (265)
T 2bjv_A 158 --------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE-------IKLPLFPGFTERARETLLN--Y 220 (265)
T ss_dssp --------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH-------TTCSSCCCBCHHHHHHHHH--S
T ss_pred --------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH-------hCCCcccCcCHHHHHHHHh--C
Confidence 1247799999996 5689999986 78888887654433222 2333 3799999999998 7
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q 005667 587 SKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~a 606 (684)
.|++|+|+|++++++++..+
T Consensus 221 ~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 221 RWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 88999999999999987543
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.82 E-value=1.4e-19 Score=194.27 Aligned_cols=221 Identities=21% Similarity=0.274 Sum_probs=159.1
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|+|++.+|+.|.+++..+........ ....++.++||+||||||||++|+++|+.++.+
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~--------------------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFK--------------------GNRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGC--------------------SSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHh--------------------cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 389999999999999875433211000 011234799999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|.. +..++.++..+. ...++||||||||.+...+... .....+.+++.||..|++..
T Consensus 112 ~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 112 FFSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp EEEEEHHHHH-SCC---C-HHHHHHHHHHHH----HTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC
T ss_pred EEEeeHHHHh-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhccc
Confidence 9999999887 5688876 667777776543 2467999999999998765432 12233458899999998421
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
-...+++||+++|..+
T Consensus 183 ------------------~~~~~v~vI~atn~~~---------------------------------------------- 198 (355)
T 2qp9_X 183 ------------------NDSQGVLVLGATNIPW---------------------------------------------- 198 (355)
T ss_dssp ---------------------CCEEEEEEESCGG----------------------------------------------
T ss_pred ------------------ccCCCeEEEeecCCcc----------------------------------------------
Confidence 1224577887776321
Q ss_pred HHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHH
Q 005667 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 l~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~ 597 (684)
.+.|.++.||+..+.++.++.++..+|++..+ . .....+++..++.|++. ..++..|.|+.
T Consensus 199 ----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-----------~--~~~~~~~~~~l~~la~~--t~G~sg~dl~~ 259 (355)
T 2qp9_X 199 ----QLDSAIRRRFERRIYIPLPDLAARTTMFEINV-----------G--DTPSVLTKEDYRTLGAM--TEGYSGSDIAV 259 (355)
T ss_dssp ----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-----------T--TSCBCCCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHH-----------h--hCCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 14577888999999999999999999987522 1 22445789999999995 46677899999
Q ss_pred HHHHHHHHHHhcC
Q 005667 598 LLENILMDAMYEI 610 (684)
Q Consensus 598 iIe~~l~~al~e~ 610 (684)
++++++..++.+.
T Consensus 260 l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 260 VVKDALMQPIRKI 272 (355)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888653
No 22
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.80 E-value=2.3e-20 Score=219.17 Aligned_cols=223 Identities=21% Similarity=0.253 Sum_probs=142.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|.|++++|+.|.+++..+.++.....+ .+ ..++.++||+||||||||++|+++|.+++.+|
T Consensus 479 iggl~~~k~~l~e~v~~p~~~p~~f~~-------~g------------~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f 539 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEHPDKFLK-------FG------------MTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTCSGGGSS-------SC------------CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE
T ss_pred hCCHHHHHHHHHHHHHhhhhCHHHHHh-------cC------------CCCCceEEEecCCCCCchHHHHHHHHHhCCce
Confidence 789999999999998754432111100 00 12358999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++.+++. +.|+|++ ++.++.+|..+.. ..+|||||||||.+...|+....+.+...+++.++||..|||..
T Consensus 540 ~~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~----~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~- 612 (806)
T 3cf2_A 540 ISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 612 (806)
T ss_dssp EECCHHHHH-TTTCSSC-HHHHHHHHHHHHT----TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-
T ss_pred EEeccchhh-ccccchH-HHHHHHHHHHHHH----cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-
Confidence 999999998 7799999 7899999988753 57899999999999998764333333334469999999999521
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+|+|..+
T Consensus 613 ------------------~~~~V~vi~aTN~p~----------------------------------------------- 627 (806)
T 3cf2_A 613 ------------------TKKNVFIIGATNRPD----------------------------------------------- 627 (806)
T ss_dssp ------------------SSSSEEEECC-CCSS-----------------------------------------------
T ss_pred ------------------CCCCEEEEEeCCCch-----------------------------------------------
Confidence 123477777777432
Q ss_pred HHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 ~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.|+|+. |||..|.++.++.++..+|++..+.. ..+. ++.-++.|++. ..++...+|+
T Consensus 628 ---~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~-------------~~~~-~~~dl~~la~~--t~g~SGadi~ 688 (806)
T 3cf2_A 628 ---IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK-------------SPVA-KDVDLEFLAKM--TNGFSGADLT 688 (806)
T ss_dssp ---SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSC-------------C--C-CC------------------CHH
T ss_pred ---hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcC-------------CCCC-CCCCHHHHHHh--CCCCCHHHHH
Confidence 14466665 99999999999999999999864311 1111 12235667773 4566678999
Q ss_pred HHHHHHHHHHHhcCC
Q 005667 597 SLLENILMDAMYEIP 611 (684)
Q Consensus 597 ~iIe~~l~~al~e~~ 611 (684)
++++.....++.+..
T Consensus 689 ~l~~~A~~~a~r~~~ 703 (806)
T 3cf2_A 689 EICQRACKLAIRESI 703 (806)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888876643
No 23
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.80 E-value=4.7e-19 Score=185.60 Aligned_cols=222 Identities=22% Similarity=0.270 Sum_probs=153.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++.+|+.|.+++..+..+...... .+ ..++.++||+||||||||++|+++|+.++.+|
T Consensus 17 i~G~~~~~~~l~~~v~~~~~~~~~~~~----~~---------------~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~ 77 (301)
T 3cf0_A 17 IGGLEDVKRELQELVQYPVEHPDKFLK----FG---------------MTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77 (301)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCHHHHHH----HC---------------CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHH----cC---------------CCCCceEEEECCCCcCHHHHHHHHHHHhCCCE
Confidence 799999999999998754332111110 00 01247999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|+|+. +..++.+|..+. ...++||||||||.+...++...........++++.||..|++..
T Consensus 78 i~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~- 150 (301)
T 3cf0_A 78 ISIKGPELL-TMWFGES-EANVREIFDKAR----QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 150 (301)
T ss_dssp EEECHHHHH-HHHHTTC-TTHHHHHHHHHH----HTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-
T ss_pred EEEEhHHHH-hhhcCch-HHHHHHHHHHHH----hcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-
Confidence 999999886 4577776 556677776543 246789999999999887643222222223458999999998411
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+|+|..+
T Consensus 151 ------------------~~~~v~vi~atn~~~----------------------------------------------- 165 (301)
T 3cf0_A 151 ------------------TKKNVFIIGATNRPD----------------------------------------------- 165 (301)
T ss_dssp ------------------TTSSEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------CCCCEEEEEecCCcc-----------------------------------------------
Confidence 123577888776321
Q ss_pred HHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 ~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.|.++. ||+.++.++.++.++..+|++..+ +..+....++ ++.++... .++..++|+
T Consensus 166 ---~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l-----------~~~~~~~~~~---~~~la~~~--~g~sg~dl~ 226 (301)
T 3cf0_A 166 ---IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL-----------RKSPVAKDVD---LEFLAKMT--NGFSGADLT 226 (301)
T ss_dssp ---GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------TTSCBCSSCC---HHHHHHTC--SSCCHHHHH
T ss_pred ---ccChHHhcCCccceEEecCCcCHHHHHHHHHHHH-----------ccCCCCccch---HHHHHHHc--CCCCHHHHH
Confidence 13356665 999999999999999999886532 2222222233 45666643 344456999
Q ss_pred HHHHHHHHHHHhcC
Q 005667 597 SLLENILMDAMYEI 610 (684)
Q Consensus 597 ~iIe~~l~~al~e~ 610 (684)
+++++++..++.+.
T Consensus 227 ~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 227 EICQRACKLAIRES 240 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877553
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.79 E-value=6.2e-19 Score=194.90 Aligned_cols=221 Identities=20% Similarity=0.287 Sum_probs=156.9
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-CC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l-~~ 356 (684)
.|+|++.+|+.|.+++..+....... .....+++++||+||||||||++|+++|+.+ +.
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~--------------------~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~ 194 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLF--------------------TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 194 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTT--------------------SGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHh--------------------hccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 37999999999999886443321000 0112245899999999999999999999999 88
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...+... .....+++++.||..|++.
T Consensus 195 ~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~ 265 (444)
T 2zan_A 195 TFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGV 265 (444)
T ss_dssp EEEEECCC----------C-CCTHHHHHHHHH----HSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCS
T ss_pred CEEEEeHHHHH-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCc
Confidence 99999999887 5678876 556677776543 2467999999999998764432 1223445889999998842
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccch
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
. ....+++||+|+|..+
T Consensus 266 ~------------------~~~~~v~vI~atn~~~--------------------------------------------- 282 (444)
T 2zan_A 266 G------------------VDNDGILVLGATNIPW--------------------------------------------- 282 (444)
T ss_dssp S------------------CCCSSCEEEEEESCGG---------------------------------------------
T ss_pred c------------------cCCCCEEEEecCCCcc---------------------------------------------
Confidence 1 1234578888876321
Q ss_pred HHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.|.|++||+.++.++.++.++..+|++..+ . .....+++..++.|++. ..++..+.|+
T Consensus 283 -----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-----------~--~~~~~l~~~~l~~la~~--t~G~sgadl~ 342 (444)
T 2zan_A 283 -----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHL-----------G--STQNSLTEADFQELGRK--TDGYSGADIS 342 (444)
T ss_dssp -----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-----------T--TSCEECCHHHHHHHHHH--TTTCCHHHHH
T ss_pred -----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHH-----------h--cCCCCCCHHHHHHHHHH--cCCCCHHHHH
Confidence 14578888999999999999999999887532 1 22456789999999995 5677789999
Q ss_pred HHHHHHHHHHHhcC
Q 005667 597 SLLENILMDAMYEI 610 (684)
Q Consensus 597 ~iIe~~l~~al~e~ 610 (684)
.+++..+..++.+.
T Consensus 343 ~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 343 IIVRDALMQPVRKV 356 (444)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887664
No 25
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=7.1e-18 Score=177.68 Aligned_cols=205 Identities=24% Similarity=0.276 Sum_probs=147.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++|++.+++.+..++.....+ ..+..++||+||||||||++|+++|+.++.+|
T Consensus 31 iiG~~~~~~~l~~~l~~~~~~---------------------------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~ 83 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKKR---------------------------NECLDHILFSGPAGLGKTTLANIISYEMSANI 83 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHHT---------------------------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE
T ss_pred hCChHHHHHHHHHHHHHHHhc---------------------------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 799999999999888522110 01236899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++..+.. ...+...+.. .+.+++||||||+.+... +++.|++.|++..+
T Consensus 84 ~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~~ 135 (338)
T 3pfi_A 84 KTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYRL 135 (338)
T ss_dssp EEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCC
T ss_pred EEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHHhccc
Confidence 9999976642 2233333332 246799999999999877 99999999985443
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.+-... ......+.++..++++|+++|..+
T Consensus 136 ~~~~~~---~~~~~~~~~~~~~~~~i~atn~~~----------------------------------------------- 165 (338)
T 3pfi_A 136 DIIIGS---GPAAQTIKIDLPKFTLIGATTRAG----------------------------------------------- 165 (338)
T ss_dssp ------------CCCCCCCCCCCEEEEEESCGG-----------------------------------------------
T ss_pred hhhccc---CccccceecCCCCeEEEEeCCCcc-----------------------------------------------
Confidence 221000 001112233444678888776311
Q ss_pred HHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005667 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 ~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~i 598 (684)
.+.|+|++|++.++.|.+++.+++.+++...+.. . .+.+++++++.|++ .|++++|.+.++
T Consensus 166 ---~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-----------~--~~~~~~~~~~~l~~---~~~G~~r~l~~~ 226 (338)
T 3pfi_A 166 ---MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-----------L--NKTCEEKAALEIAK---RSRSTPRIALRL 226 (338)
T ss_dssp ---GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-----------T--TCEECHHHHHHHHH---TTTTCHHHHHHH
T ss_pred ---ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-----------c--CCCCCHHHHHHHHH---HHCcCHHHHHHH
Confidence 1568899999999999999999999988753221 1 46789999999999 468889999999
Q ss_pred HHHHHHHHH
Q 005667 599 LENILMDAM 607 (684)
Q Consensus 599 Ie~~l~~al 607 (684)
++++...+.
T Consensus 227 l~~~~~~a~ 235 (338)
T 3pfi_A 227 LKRVRDFAD 235 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998765543
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.79 E-value=2.2e-18 Score=186.54 Aligned_cols=223 Identities=23% Similarity=0.307 Sum_probs=153.5
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|+|++.+++.|...+..+..+.. .......++.++||+||||||||++|+++|+.++.+
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~--------------------~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPE--------------------LFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTT--------------------TSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHhccCHH--------------------HhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 379999999999998864433100 001122335899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++|+++. ..|+|.. ...+..++..+. ...++||||||||.+...+.. +.......+++.|+..|+|..
T Consensus 176 ~~~v~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 176 FFNISAASLT-SKYVGEG-EKLVRALFAVAR----ELQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEEECSCCC--------C-HHHHHHHHHHHH----HSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC
T ss_pred EEEeeHHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhccc
Confidence 9999999987 4577776 566677766543 246689999999999776432 112234558999999998422
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
. ....+++||+|+|..+
T Consensus 247 ~-----------------~~~~~v~vI~atn~~~---------------------------------------------- 263 (389)
T 3vfd_A 247 S-----------------AGDDRVLVMGATNRPQ---------------------------------------------- 263 (389)
T ss_dssp ----------------------CEEEEEEESCGG----------------------------------------------
T ss_pred c-----------------cCCCCEEEEEecCCch----------------------------------------------
Confidence 1 1123577888776321
Q ss_pred HHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHH
Q 005667 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 l~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~ 597 (684)
.+.+.+++||+.++.+..++.++..+|+...+ .. ....+++++++.|++. ..++..+.|+.
T Consensus 264 ----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~-----------~~--~~~~l~~~~~~~la~~--~~g~~~~~l~~ 324 (389)
T 3vfd_A 264 ----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLL-----------CK--QGSPLTQKELAQLARM--TDGYSGSDLTA 324 (389)
T ss_dssp ----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-----------TT--SCCCSCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHH-----------Hh--cCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 14578888999899999999999999987521 11 2456899999999985 45667789999
Q ss_pred HHHHHHHHHHhcCC
Q 005667 598 LLENILMDAMYEIP 611 (684)
Q Consensus 598 iIe~~l~~al~e~~ 611 (684)
+++.....++.++.
T Consensus 325 L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 325 LAKDAALGPIRELK 338 (389)
T ss_dssp HHHHHTTHHHHTSC
T ss_pred HHHHHHHHHHHhhh
Confidence 98888777776653
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.79 E-value=2.9e-18 Score=184.01 Aligned_cols=223 Identities=20% Similarity=0.285 Sum_probs=159.3
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|+|++.+++.|.+.+..+..+... ......++.++||+||||||||++|+++|+.++.+
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~--------------------~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDI--------------------FTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT--------------------SCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhChHh--------------------HhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4899999999999998744332100 00112335899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|.|.. ...++.++..+. ...++||||||||.+...+.. +.+....++++.||..|++..
T Consensus 145 ~~~i~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 145 FFSISASSLT-SKWVGEG-EKMVRALFAVAR----CQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp EEEEEGGGGC-CSSTTHH-HHHHHHHHHHHH----HTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC--
T ss_pred EEEEehHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhccc
Confidence 9999999987 4577765 566666666543 346799999999999876432 122334458899999998422
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
. -...+++||+++|..+
T Consensus 216 ~-----------------~~~~~v~vI~atn~~~---------------------------------------------- 232 (357)
T 3d8b_A 216 T-----------------SSEDRILVVGATNRPQ---------------------------------------------- 232 (357)
T ss_dssp -------------------CCCCEEEEEEESCGG----------------------------------------------
T ss_pred c-----------------cCCCCEEEEEecCChh----------------------------------------------
Confidence 1 0123577887776321
Q ss_pred HHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHH
Q 005667 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 l~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~ 597 (684)
.+.+.+++||+..+.+..++.++..+|+...+ ... .+.+++++++.|++. ..++..+.|+.
T Consensus 233 ----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~-----------~~~--~~~l~~~~l~~la~~--t~G~s~~dl~~ 293 (357)
T 3d8b_A 233 ----EIDEAARRRLVKRLYIPLPEASARKQIVINLM-----------SKE--QCCLSEEEIEQIVQQ--SDAFSGADMTQ 293 (357)
T ss_dssp ----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-----------HTS--CBCCCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHH-----------hhc--CCCccHHHHHHHHHH--cCCCCHHHHHH
Confidence 13467888999999999999999999887521 111 456889999999996 45666799999
Q ss_pred HHHHHHHHHHhcCC
Q 005667 598 LLENILMDAMYEIP 611 (684)
Q Consensus 598 iIe~~l~~al~e~~ 611 (684)
+++.....++.++.
T Consensus 294 l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 294 LCREASLGPIRSLQ 307 (357)
T ss_dssp HHHHHHTHHHHHCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99988777766543
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=2.7e-18 Score=177.68 Aligned_cols=222 Identities=25% Similarity=0.339 Sum_probs=156.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++.+++.|.+.+..+..+... ...+..++.++||+||||||||++|+++|+.++.+|
T Consensus 23 i~G~~~~~~~l~~~i~~~~~~~~~--------------------~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 23 IAGQDVAKQALQEMVILPSVRPEL--------------------FTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp SCCCHHHHHHHHHHTHHHHHCGGG--------------------SCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred hCChHHHHHHHHHHHHhhhhCHHH--------------------HhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 799999999999988644331100 001122348999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..+.|.. +..++.++..+. ...++||||||+|.+...+... .......+++.||..+++...
T Consensus 83 ~~i~~~~l~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 83 LNISAASLT-SKYVGDG-EKLVRALFAVAR----HMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp EEEESTTTS-SSSCSCH-HHHHHHHHHHHH----HTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC-
T ss_pred EEeeHHHHh-hcccchH-HHHHHHHHHHHH----HcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhcccc
Confidence 999999887 4577765 566666665432 3567999999999998764321 122234588899999984211
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
. ....++++|+++|..+
T Consensus 154 ~----------------~~~~~v~vi~~tn~~~----------------------------------------------- 170 (297)
T 3b9p_A 154 N----------------PDGDRIVVLAATNRPQ----------------------------------------------- 170 (297)
T ss_dssp ---------------------CEEEEEEESCGG-----------------------------------------------
T ss_pred c----------------CCCCcEEEEeecCChh-----------------------------------------------
Confidence 0 1123467777766321
Q ss_pred HHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005667 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 ~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~i 598 (684)
.+.|.++.||+..+.++.++.++...|+...+. .. ...+++++++.|++. ..++..+.|+.+
T Consensus 171 ---~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~-----------~~--~~~~~~~~~~~la~~--~~g~~~~~l~~l 232 (297)
T 3b9p_A 171 ---ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ-----------KQ--GSPLDTEALRRLAKI--TDGYSGSDLTAL 232 (297)
T ss_dssp ---GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG-----------GG--SCCSCHHHHHHHHHH--TTTCCHHHHHHH
T ss_pred ---hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH-----------hc--CCCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 144777889999999999999998888875221 11 345789999999995 466667899999
Q ss_pred HHHHHHHHHhcC
Q 005667 599 LENILMDAMYEI 610 (684)
Q Consensus 599 Ie~~l~~al~e~ 610 (684)
++.....++.+.
T Consensus 233 ~~~a~~~a~r~~ 244 (297)
T 3b9p_A 233 AKDAALEPIREL 244 (297)
T ss_dssp HHHHTTHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 998877777664
No 29
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=1.2e-18 Score=204.48 Aligned_cols=219 Identities=20% Similarity=0.275 Sum_probs=162.7
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|.|++++|+.|.+.|..++++.....+ .+ ..+++++||+||||||||+||+++|++++.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~-------~g------------~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKA-------IG------------VKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTS-------CC------------CCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhh-------cC------------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4899999999999999755543111100 00 1245899999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|+. +..++.+|..+.. ..++||||||||.+.+.|+..+ +...+++.++||..|+|..
T Consensus 266 ~~~v~~~~l~-sk~~ges-e~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~ 336 (806)
T 3cf2_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp EEEEEHHHHH-SSCTTHH-HHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCC
T ss_pred EEEEEhHHhh-cccchHH-HHHHHHHHHHHHH----cCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhccc
Confidence 9999999998 6799988 7889999988753 5789999999999998865432 2334568999999998421
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+++|..+
T Consensus 337 -------------------~~~~V~VIaaTN~~d---------------------------------------------- 351 (806)
T 3cf2_A 337 -------------------QRAHVIVMAATNRPN---------------------------------------------- 351 (806)
T ss_dssp -------------------GGGCEEEEEECSSTT----------------------------------------------
T ss_pred -------------------ccCCEEEEEecCChh----------------------------------------------
Confidence 123577777777332
Q ss_pred HHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHH
Q 005667 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 l~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~L 595 (684)
.+.|.|+. ||+..|.++.++.++..+|++..+ .+..+. ++.-++.|+.. ..++....|
T Consensus 352 ----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l-------------~~~~~~-~dvdl~~lA~~--T~GfsgaDL 411 (806)
T 3cf2_A 352 ----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT-------------KNMKLA-DDVDLEQVANE--THGHVGADL 411 (806)
T ss_dssp ----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC-------------SSSEEC-TTCCHHHHHHH--CCSCCHHHH
T ss_pred ----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh-------------cCCCCC-cccCHHHHHHh--cCCCCHHHH
Confidence 14466765 999999999999999999987532 111221 22336777875 566777899
Q ss_pred HHHHHHHHHHHHhc
Q 005667 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
..++......++.+
T Consensus 412 ~~Lv~eA~~~A~~r 425 (806)
T 3cf2_A 412 AALCSEAALQAIRK 425 (806)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99998887776544
No 30
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.78 E-value=3.5e-19 Score=192.52 Aligned_cols=197 Identities=24% Similarity=0.437 Sum_probs=141.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~--pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEI 404 (684)
.++|++|++||||+.+|+++....+. +|+.+||+.+.+ +..+|+.. +.++.......+.++.+.+|+||||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~-g~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEK-GAFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECS-CSSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccc-cccCCcccccCChHhhcCCCeEEecCh
Confidence 68999999999999999999988743 499999998753 22333321 111111122345677788999999999
Q ss_pred cccchhccccccCCCCchHHHHHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccC
Q 005667 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 405 DkL~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
+.|+.. +|..||++|+ +...++ | ....+. .++-+|++++ .+++..+.++
T Consensus 232 ~~l~~~--------------~Q~~Ll~~l~~~~~~~~---g-----~~~~~~---~~~rii~at~-~~l~~~v~~g---- 281 (368)
T 3dzd_A 232 GELDQR--------------VQAKLLRVLETGSFTRL---G-----GNQKIE---VDIRVISATN-KNLEEEIKKG---- 281 (368)
T ss_dssp GGSCHH--------------HHHHHHHHHHHSEECCB---T-----CCCBEE---CCCEEEEEES-SCHHHHHHTT----
T ss_pred hhCCHH--------------HHHHHHHHHHhCCcccC---C-----CCccee---eeeEEEEecC-CCHHHHHHcC----
Confidence 999998 9999999998 433332 1 112222 2455666655 3555555433
Q ss_pred CCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceE-EEcCCCCH--HHHHHHHhchHHHHHHHH
Q 005667 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~i-I~f~pLs~--eel~~Il~~~l~~L~kqy 560 (684)
.|+++|++|+..+ |.++||.+ +|+..++...+..+.+++
T Consensus 282 --------------------------------------~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~ 323 (368)
T 3dzd_A 282 --------------------------------------NFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEY 323 (368)
T ss_dssp --------------------------------------SSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHT
T ss_pred --------------------------------------CccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHc
Confidence 4778899999764 88999988 899999887655554332
Q ss_pred HHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 561 ~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
. .....++++|++.|.. |+|++|+|+|+++|++++.
T Consensus 324 ~------~~~~~~~~~a~~~L~~--~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 324 K------KNCFELSEETKEYLMK--QEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp T------CCCCCBCHHHHHHHHT--CCCTTHHHHHHHHHHHHHH
T ss_pred C------CCCCCcCHHHHHHHHh--CCCCcHHHHHHHHHHHHHH
Confidence 1 1236799999999999 8999999999999999875
No 31
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.77 E-value=1.2e-18 Score=189.41 Aligned_cols=197 Identities=18% Similarity=0.360 Sum_probs=141.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccccc----ccccccchHHHHHHHHhhcchhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~l~~----~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDE 403 (684)
.++||+|++|||||++|++++.... .||+.+||+.+.+ +..+|+..+. ++.......+.++.+.+|+|||||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~-~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGA-FTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTS-STTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCC-CCCcccccCCceeeCCCcEEEEcC
Confidence 6889999999999999999988763 6899999998753 2334443111 111112234567788899999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHhCcee-eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcccc
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v-~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|+.++.. +|..||++|+...+ ++ | ....+. .++.+|+++| .++++.+.++
T Consensus 240 i~~l~~~--------------~q~~Ll~~l~~~~~~~~---g-----~~~~~~---~~~rii~at~-~~l~~~~~~g--- 290 (387)
T 1ny5_A 240 IGELSLE--------------AQAKLLRVIESGKFYRL---G-----GRKEIE---VNVRILAATN-RNIKELVKEG--- 290 (387)
T ss_dssp GGGCCHH--------------HHHHHHHHHHHSEECCB---T-----CCSBEE---CCCEEEEEES-SCHHHHHHTT---
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEEeC---C-----CCceee---ccEEEEEeCC-CCHHHHHHcC---
Confidence 9999998 99999999984333 22 1 111122 3455666665 3555555443
Q ss_pred CCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccce-EEEcCCCCH--HHHHHHHhchHHHHHHH
Q 005667 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQ 559 (684)
Q Consensus 483 ~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~--eel~~Il~~~l~~L~kq 559 (684)
.|+++|+.|+.. .|.++||.+ +|+..++..++..+.++
T Consensus 291 ---------------------------------------~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~ 331 (387)
T 1ny5_A 291 ---------------------------------------KFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRK 331 (387)
T ss_dssp ---------------------------------------SSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------CccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHH
Confidence 367888888864 578888865 89999888765555433
Q ss_pred HHHHHhhCCcc-eecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005667 560 YRKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 560 y~~~l~~~gi~-l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~ 605 (684)
+ +.. ..+++++++.|.. |+|++|+|+|+++|++++..
T Consensus 332 ~-------~~~~~~~~~~a~~~l~~--~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 332 Y-------AKEVEGFTKSAQELLLS--YPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp T-------TCCCCEECHHHHHHHHH--SCCTTHHHHHHHHHHHHHHH
T ss_pred c-------CCCCCCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHHh
Confidence 2 223 4699999999999 89999999999999998864
No 32
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=2.5e-17 Score=167.35 Aligned_cols=219 Identities=22% Similarity=0.267 Sum_probs=146.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++.+|+.+...+.. ... ... ... ... ..+.++||+||||||||++|+++|+.++.++
T Consensus 14 i~G~~~~~~~l~~~~~~-~~~---~~~----~~~-----------~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 73 (257)
T 1lv7_A 14 VAGCDEAKEEVAELVEY-LRE---PSR----FQK-----------LGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 73 (257)
T ss_dssp SCSCHHHHHHTHHHHHH-HHC---GGG----C-----------------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred hcCcHHHHHHHHHHHHH-HhC---HHH----HHH-----------cCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCE
Confidence 79999999999887742 111 000 000 000 1236899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..+.|.. ...+..++..+. ...++++||||||.+...+.....+........++.+|..|++..
T Consensus 74 ~~i~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~- 146 (257)
T 1lv7_A 74 FTISGSDFV-EMFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE- 146 (257)
T ss_dssp EEECSCSST-TSCCCCC-HHHHHHHHHHHH----TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-
T ss_pred EEEeHHHHH-HHhhhhh-HHHHHHHHHHHH----HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-
Confidence 999999887 4467766 456667766542 235689999999999876543222223333457888999888411
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+++|..+
T Consensus 147 ------------------~~~~~~vI~~tn~~~----------------------------------------------- 161 (257)
T 1lv7_A 147 ------------------GNEGIIVIAATNRPD----------------------------------------------- 161 (257)
T ss_dssp ------------------SSSCEEEEEEESCTT-----------------------------------------------
T ss_pred ------------------cCCCEEEEEeeCCch-----------------------------------------------
Confidence 123467777766321
Q ss_pred HHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHH-HHHHHHhcCCCCCChHHH
Q 005667 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 ~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeA-l~~La~~ay~~~~GAR~L 595 (684)
.+.|.++. ||+..+.+..++.++..+|++..+ + .+.+++++ +..++. ...++++|+|
T Consensus 162 ---~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~-----------~----~~~l~~~~~~~~la~--~~~G~~~~dl 221 (257)
T 1lv7_A 162 ---VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM-----------R----RVPLAPDIDAAIIAR--GTPGFSGADL 221 (257)
T ss_dssp ---TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------T----TSCBCTTCCHHHHHH--TCTTCCHHHH
T ss_pred ---hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH-----------h----cCCCCccccHHHHHH--HcCCCCHHHH
Confidence 12345544 899999999999999888876421 1 12233333 445555 2334489999
Q ss_pred HHHHHHHHHHHHhc
Q 005667 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
+++++++...+..+
T Consensus 222 ~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 222 ANLVNEAALFAARG 235 (257)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988877654
No 33
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.76 E-value=1.3e-17 Score=186.19 Aligned_cols=218 Identities=24% Similarity=0.279 Sum_probs=147.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++++|+.|.+.+.. ++..... . .. .. ..+.++||+||||||||++|+++|..++.||
T Consensus 18 i~G~~~~~~~l~e~v~~-l~~~~~~-~---~~--------------g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f 77 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEF-LKDPSKF-N---RI--------------GA-RMPKGILLVGPPGTGKTLLARAVAGEANVPF 77 (476)
T ss_dssp CCSCHHHHHHHHHHHHH-HHCTHHH-H---TT--------------TC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred hCCcHHHHHHHHHHHHH-hhChHHH-h---hc--------------CC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 89999999999998752 2210000 0 00 01 1236899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...+.....+.+...+++++.||..|++..
T Consensus 78 ~~is~~~~~-~~~~g~~-~~~~r~lf~~A~----~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~- 150 (476)
T 2ce7_A 78 FHISGSDFV-ELFVGVG-AARVRDLFAQAK----AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD- 150 (476)
T ss_dssp EEEEGGGTT-TCCTTHH-HHHHHHHHHHHH----HTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-
T ss_pred eeCCHHHHH-HHHhccc-HHHHHHHHHHHH----hcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-
Confidence 999999987 4577876 566777777653 246799999999999887654334455566678999999998411
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
...++++|+++|..+
T Consensus 151 ------------------~~~~viVIaaTn~~~----------------------------------------------- 165 (476)
T 2ce7_A 151 ------------------SKEGIIVMAATNRPD----------------------------------------------- 165 (476)
T ss_dssp ------------------GGGTEEEEEEESCGG-----------------------------------------------
T ss_pred ------------------CCCCEEEEEecCChh-----------------------------------------------
Confidence 123577787776321
Q ss_pred HHcCCCcccc--cccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHH-HHHHHHHhcCCCCCChHHH
Q 005667 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 ~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ee-Al~~La~~ay~~~~GAR~L 595 (684)
.+.|.++ +||+..+.++.++.++..+|++..+ +. ..+.++ .++.++.. ..++-.|+|
T Consensus 166 ---~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~-----------~~----~~l~~~v~l~~la~~--t~G~sgadL 225 (476)
T 2ce7_A 166 ---ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT-----------RN----KPLAEDVNLEIIAKR--TPGFVGADL 225 (476)
T ss_dssp ---GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------TT----SCBCTTCCHHHHHHT--CTTCCHHHH
T ss_pred ---hhchhhcccCcceeEeecCCCCHHHHHHHHHHHH-----------Hh----CCCcchhhHHHHHHh--cCCCcHHHH
Confidence 0234554 5999999999999999988886421 11 122222 25666663 334445999
Q ss_pred HHHHHHHHHHHHh
Q 005667 596 RSLLENILMDAMY 608 (684)
Q Consensus 596 r~iIe~~l~~al~ 608 (684)
+++++++...+..
T Consensus 226 ~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 226 ENLVNEAALLAAR 238 (476)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988777654
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.76 E-value=2.8e-17 Score=166.04 Aligned_cols=219 Identities=22% Similarity=0.248 Sum_probs=134.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++.+|+.|.+.+.. ... .. .....+ ..++.++||+||||||||++|+++|+.++.++
T Consensus 8 i~G~~~~~~~l~~~~~~-~~~----~~---~~~~~g------------~~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 67 (262)
T 2qz4_A 8 VAGMHEAKLEVREFVDY-LKS----PE---RFLQLG------------AKVPKGALLLGPPGCGKTLLAKAVATEAQVPF 67 (262)
T ss_dssp SCSCHHHHHHHHHHHHH-HHC----CC---------------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred hCCHHHHHHHHHHHHHH-HHC----HH---HHHHcC------------CCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 79999999999887752 110 00 000000 01237899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccC-CCCchHHHHHHHHHHHhCce
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~-~d~~~e~vq~~LL~~LEg~~ 437 (684)
+.++++++. ..+.|.. ...+..++..+. ...++||||||||.+...+.....+ .+......+..|+..+++..
T Consensus 68 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 68 LAMAGAEFV-EVIGGLG-AARVRSLFKEAR----ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp EEEETTTTS-SSSTTHH-HHHHHHHHHHHH----HTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred EEechHHHH-hhccChh-HHHHHHHHHHHH----hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 999999886 3455554 455666665542 2357899999999997764321110 11122235667777776310
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++++|+|+|..+
T Consensus 142 -------------------~~~~~~vi~~tn~~~---------------------------------------------- 156 (262)
T 2qz4_A 142 -------------------TTDHVIVLASTNRAD---------------------------------------------- 156 (262)
T ss_dssp -------------------TTCCEEEEEEESCGG----------------------------------------------
T ss_pred -------------------CCCCEEEEecCCChh----------------------------------------------
Confidence 123577777766321
Q ss_pred HHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHH-HHHHHHHhcCCCCCChHH
Q 005667 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 l~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ee-Al~~La~~ay~~~~GAR~ 594 (684)
.+.+.++. ||+..+.+..++.++..+|++..+..+ .+..+++ ..+.++.. ..++..|.
T Consensus 157 ----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~-------------~~~~~~~~~~~~l~~~--~~g~~~~~ 217 (262)
T 2qz4_A 157 ----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL-------------KLTQSSTFYSQRLAEL--TPGFSGAD 217 (262)
T ss_dssp ----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT-------------TCCBTHHHHHHHHHHT--CTTCCHHH
T ss_pred ----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC-------------CCCcchhhHHHHHHHH--CCCCCHHH
Confidence 02356666 999999999999999999888643221 3344444 35677774 44555689
Q ss_pred HHHHHHHHHHHHH
Q 005667 595 LRSLLENILMDAM 607 (684)
Q Consensus 595 Lr~iIe~~l~~al 607 (684)
|+++++++...+.
T Consensus 218 l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 218 IANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHH
Confidence 9988887665443
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=1.2e-17 Score=171.63 Aligned_cols=218 Identities=26% Similarity=0.346 Sum_probs=145.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++.+++.|...+..+......... .+. .++.++||+||||||||++|+++|+.++.++
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~----~~~---------------~~~~~~ll~G~~GtGKT~la~~la~~~~~~~ 79 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEK----VGI---------------EPPKGILLYGPPGTGKTLLAKAVATETNATF 79 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHH----HCC---------------CCCSEEEEESSSSSSHHHHHHHHHHHTTCEE
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHh----cCC---------------CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 799999999999988644332111000 000 1237899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHH---hC
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---EG 435 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~L---Eg 435 (684)
+.++++++. ..+.|.. ...+..++..+. ...++||||||||.+...+.....+.+. ..+..|+.++ ++
T Consensus 80 ~~v~~~~~~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 80 IRVVGSELV-KKFIGEG-ASLVKDIFKLAK----EKAPSIIFIDEIDAIAAKRTDALTGGDR---EVQRTLMQLLAEMDG 150 (285)
T ss_dssp EEEEGGGGC-CCSTTHH-HHHHHHHHHHHH----HTCSEEEEEETTHHHHBCCSSSCCGGGG---HHHHHHHHHHHHHHT
T ss_pred EEEehHHHH-HhccchH-HHHHHHHHHHHH----HcCCeEEEEECHHHhcccCccccCCccH---HHHHHHHHHHHHhhC
Confidence 999999887 4577765 556666665432 2456899999999998764432222222 2455555554 32
Q ss_pred ceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccc
Q 005667 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.. ...++++|+|+|..+
T Consensus 151 ~~-------------------~~~~~~vI~ttn~~~-------------------------------------------- 167 (285)
T 3h4m_A 151 FD-------------------ARGDVKIIGATNRPD-------------------------------------------- 167 (285)
T ss_dssp TC-------------------SSSSEEEEEECSCGG--------------------------------------------
T ss_pred CC-------------------CCCCEEEEEeCCCch--------------------------------------------
Confidence 10 113577788776321
Q ss_pred hHHHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChH
Q 005667 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dl~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR 593 (684)
.+.|.++. ||+.++.+++++.++..+|++..+ ... .+. .+..+..++.. ..++..|
T Consensus 168 ------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~-----------~~~--~~~-~~~~~~~l~~~--~~g~~~~ 225 (285)
T 3h4m_A 168 ------ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT-----------RKM--NLA-EDVNLEEIAKM--TEGCVGA 225 (285)
T ss_dssp ------GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH-----------TTS--CBC-TTCCHHHHHHH--CTTCCHH
T ss_pred ------hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH-----------hcC--CCC-CcCCHHHHHHH--cCCCCHH
Confidence 13355555 999999999999999999987521 111 111 22335666764 4566789
Q ss_pred HHHHHHHHHHHHHHhc
Q 005667 594 GLRSLLENILMDAMYE 609 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e 609 (684)
.|+.++..+...++.+
T Consensus 226 ~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999888877654
No 36
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.72 E-value=1.2e-16 Score=179.24 Aligned_cols=216 Identities=26% Similarity=0.318 Sum_probs=146.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++++|+.+.+.+.. +.. .. . +....... +.++||+||||||||+||++||..++.+|
T Consensus 33 v~G~~~~k~~l~~lv~~-l~~----~~---~-----------~~~lg~~i-p~GvLL~GppGtGKTtLaraIa~~~~~~~ 92 (499)
T 2dhr_A 33 VAGAEEAKEELKEIVEF-LKN----PS---R-----------FHEMGARI-PKGVLLVGPPGVGKTHLARAVAGEARVPF 92 (499)
T ss_dssp SCSCHHHHHHHHHHHHH-HHC----GG---G-----------TTTTSCCC-CSEEEEECSSSSSHHHHHHHHHHHTTCCE
T ss_pred cCCcHHHHHHHHHHHHH-hhc----hh---h-----------hhhccCCC-CceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 79999999999988752 211 00 0 01111222 25799999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ..++|.. ...++.+|+.+.. ..++|+||||||.+...+.....+.+...+..++.||..|+|..
T Consensus 93 i~i~g~~~~-~~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~- 165 (499)
T 2dhr_A 93 ITASGSDFV-EMFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE- 165 (499)
T ss_dssp EEEEGGGGT-SSCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-
T ss_pred EEEehhHHH-HhhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-
Confidence 999999887 3467765 5667777776542 35789999999999876543211223334457788888888421
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
..+.+++|+++|..+
T Consensus 166 ------------------~~~~viviAatn~p~----------------------------------------------- 180 (499)
T 2dhr_A 166 ------------------KDTAIVVMAATNRPD----------------------------------------------- 180 (499)
T ss_dssp ------------------SSCCCEEEECCSCGG-----------------------------------------------
T ss_pred ------------------cCccEEEEEecCChh-----------------------------------------------
Confidence 112366666665321
Q ss_pred HHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHH-HHHHHHhcCCCCCC-hHH
Q 005667 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTG-ARG 594 (684)
Q Consensus 519 ~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeA-l~~La~~ay~~~~G-AR~ 594 (684)
.+.|.++. ||+.++.+..++.++..+|++..+ . .+.+++++ +..|+. .|++. .|+
T Consensus 181 ---~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~-------------~--~~~l~~dv~l~~lA~---~t~G~~gad 239 (499)
T 2dhr_A 181 ---ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAK---RTPGFVGAD 239 (499)
T ss_dssp ---GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT-------------S--SSCCCCSSTTHHHHT---TSCSCCHHH
T ss_pred ---hcCcccccccccceEEecCCCCHHHHHHHHHHHH-------------h--cCCCChHHHHHHHHH---hcCCCCHHH
Confidence 03355654 899999999999999999886421 1 22344443 555555 34444 499
Q ss_pred HHHHHHHHHHHHH
Q 005667 595 LRSLLENILMDAM 607 (684)
Q Consensus 595 Lr~iIe~~l~~al 607 (684)
|+++++++...+.
T Consensus 240 L~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 240 LENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876654
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.72 E-value=4.7e-16 Score=162.15 Aligned_cols=202 Identities=23% Similarity=0.344 Sum_probs=143.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++|++.+++.+..++...... . .++.++||+||||||||++|+++++.++.++
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~----~-----------------------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKAR----K-----------------------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH----C-----------------------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred hhCHHHHHHHHHHHHHHHHcc----C-----------------------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 699999999998887521110 0 0126899999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++.+.. ...+...+..+ .+.+++|||||||.+... .++.|+++|+...+
T Consensus 67 ~~~~~~~~~~--------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~ 119 (324)
T 1hqc_A 67 RVTSGPAIEK--------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVM 119 (324)
T ss_dssp EEECTTTCCS--------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEE
T ss_pred EEEeccccCC--------hHHHHHHHHHh-----ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhh
Confidence 9999977642 12223333321 146789999999999877 89999999985444
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.+. +... .....+.....++++|++++..+
T Consensus 120 ~~v--~~~~-~~~~~~~~~~~~~~~i~~t~~~~----------------------------------------------- 149 (324)
T 1hqc_A 120 DIV--IGQG-PAARTIRLELPRFTLIGATTRPG----------------------------------------------- 149 (324)
T ss_dssp EEC--CSSS-SSCCCEEEECCCCEEEEEESCCS-----------------------------------------------
T ss_pred HHh--cccc-ccccccccCCCCEEEEEeCCCcc-----------------------------------------------
Confidence 321 1100 11122334445678888766321
Q ss_pred HHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHH
Q 005667 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 ~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~i 598 (684)
.+.++|++|++.++.+.+++.+++.+++...+. .. .+.+++++++.|+++ ++++.|.++++
T Consensus 150 ---~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~-----------~~--~~~~~~~~~~~l~~~---~~G~~r~l~~~ 210 (324)
T 1hqc_A 150 ---LITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR-----------LL--GVRITEEAALEIGRR---SRGTMRVAKRL 210 (324)
T ss_dssp ---SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH-----------TT--TCCCCHHHHHHHHHH---SCSCHHHHHHH
T ss_pred ---cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH-----------hc--CCCCCHHHHHHHHHH---ccCCHHHHHHH
Confidence 266889999988999999999998888765321 11 456899999999996 26778999998
Q ss_pred HHHHH
Q 005667 599 LENIL 603 (684)
Q Consensus 599 Ie~~l 603 (684)
++++.
T Consensus 211 l~~~~ 215 (324)
T 1hqc_A 211 FRRVR 215 (324)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88764
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=5.8e-17 Score=172.23 Aligned_cols=258 Identities=17% Similarity=0.255 Sum_probs=145.4
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
++|++.+++.+..++. .+... ..++.++||+||||||||++|+++|+.++.
T Consensus 46 ivG~~~~~~~l~~l~~----~~~~~-----------------------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 98 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLE----MIREG-----------------------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDT 98 (368)
T ss_dssp EESCHHHHHHHHHHHH----HHHTT-----------------------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSC
T ss_pred ccChHHHHHHHHHHHH----HHHcC-----------------------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccC
Confidence 6999999998776553 11000 012379999999999999999999999964
Q ss_pred CEEEEeccccccccccccc------------------------------------------------hHHHHHHHHhhcc
Q 005667 357 PFVIADATTLTQAGYVGED------------------------------------------------VESILYKLLTVSD 388 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~------------------------------------------------~~~~l~~l~~~a~ 388 (684)
+|+.+++..+... +.+.. ....++..+..+.
T Consensus 99 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 177 (368)
T 3uk6_A 99 PFTAIAGSEIFSL-EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV 177 (368)
T ss_dssp CEEEEEGGGGSCS-SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHH
T ss_pred Ccccccchhhhhc-ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHH
Confidence 8999988764321 11111 0112222222211
Q ss_pred hhhHh-----hcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCc-eE
Q 005667 389 YNVAA-----AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKD-IL 462 (684)
Q Consensus 389 ~~v~~-----a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~Idtsn-iI 462 (684)
..... ..++||||||||.+... .++.|++.++... ...+.+.+.+ +.
T Consensus 178 ~~~~~~g~~~~~~~vl~IDEi~~l~~~--------------~~~~L~~~le~~~-------------~~~~ii~t~~~~~ 230 (368)
T 3uk6_A 178 AEWREEGKAEIIPGVLFIDEVHMLDIE--------------SFSFLNRALESDM-------------APVLIMATNRGIT 230 (368)
T ss_dssp HHHHHHTC---CBCEEEEESGGGSBHH--------------HHHHHHHHTTCTT-------------CCEEEEEESCSEE
T ss_pred HHhhhhccccccCceEEEhhccccChH--------------HHHHHHHHhhCcC-------------CCeeeeeccccee
Confidence 10001 11579999999999877 9999999998311 1111122221 22
Q ss_pred EEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCH
Q 005667 463 FICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE 542 (684)
Q Consensus 463 fI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~ 542 (684)
+|.+++... ...+.|.|++|+.. +.|++++.
T Consensus 231 ~i~~t~~~~------------------------------------------------~~~l~~~l~sR~~~-i~~~~~~~ 261 (368)
T 3uk6_A 231 RIRGTSYQS------------------------------------------------PHGIPIDLLDRLLI-VSTTPYSE 261 (368)
T ss_dssp ECBTSSCEE------------------------------------------------ETTCCHHHHTTEEE-EEECCCCH
T ss_pred eeeccCCCC------------------------------------------------cccCCHHHHhhccE-EEecCCCH
Confidence 222211000 01256889999986 79999999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCCCcCCCccccE
Q 005667 543 NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDA 622 (684)
Q Consensus 543 eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~~~~g~~~i~~ 622 (684)
+++.+|+...+.. . .+.+++++++.|++.+ +++++|.+.+++++++..+..+-.
T Consensus 262 ~e~~~il~~~~~~-----------~--~~~~~~~~l~~l~~~~--~~G~~r~~~~ll~~a~~~A~~~~~----------- 315 (368)
T 3uk6_A 262 KDTKQILRIRCEE-----------E--DVEMSEDAYTVLTRIG--LETSLRYAIQLITAASLVCRKRKG----------- 315 (368)
T ss_dssp HHHHHHHHHHHHH-----------T--TCCBCHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhCC-----------
Confidence 9999999863221 1 4679999999999964 447799999999998877654311
Q ss_pred EEecccccCcccCCCcceEEcCCChHHHHHHHHhhhhhhhccccCCCCC
Q 005667 623 VVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 623 v~vde~~v~~~~~g~~~~i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
..|+.+++..... .+........++.+.+++.+......+++|.
T Consensus 316 ~~It~~~v~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (368)
T 3uk6_A 316 TEVQVDDIKRVYS-----LFLDESRSTQYMKEYQDAFLFNELKGETMDT 359 (368)
T ss_dssp SSBCHHHHHHHHH-----HSBCHHHHHHHHC------------------
T ss_pred CCCCHHHHHHHHH-----HhcCHHHHHHHHHHhhhhhhhhcCCcccccc
Confidence 1233444333211 0112223456666777666655554554443
No 39
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.71 E-value=6.9e-17 Score=180.91 Aligned_cols=219 Identities=20% Similarity=0.282 Sum_probs=156.6
Q ss_pred cccChHHHHHHHHHHHHhhHHhH--hhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRI--YNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.|+|++.+++.|.+.+....... +.... ..++.++||+||||||||++|+++|+.++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g---------------------~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIG---------------------VKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHT---------------------CCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcC---------------------CCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 48999999999999886433221 11110 01247999999999999999999999999
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++|+++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+... .......+++.||..|++
T Consensus 264 ~~fv~vn~~~l~-~~~~g~~-~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 264 AFFFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDG 334 (489)
T ss_dssp SEEEEEEHHHHH-TSCTTHH-HHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEchHhh-hhhcchh-HHHHHHHHHHHHh----cCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhc
Confidence 999999999987 5688876 5667777776532 457899999999998864321 122234599999999984
Q ss_pred ceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccc
Q 005667 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.. ...++++|+|+|..+
T Consensus 335 ~~-------------------~~~~v~vIaaTn~~~-------------------------------------------- 351 (489)
T 3hu3_A 335 LK-------------------QRAHVIVMAATNRPN-------------------------------------------- 351 (489)
T ss_dssp SC-------------------TTSCEEEEEEESCGG--------------------------------------------
T ss_pred cc-------------------cCCceEEEEecCCcc--------------------------------------------
Confidence 21 123477787776321
Q ss_pred hHHHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChH
Q 005667 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dl~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR 593 (684)
.+.|.++. ||+..+.+..++.++..+|++..+. ...+. .+..++.++. ...++..+
T Consensus 352 ------~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~-------------~~~l~-~~~~l~~la~--~t~g~s~~ 409 (489)
T 3hu3_A 352 ------SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK-------------NMKLA-DDVDLEQVAN--ETHGHVGA 409 (489)
T ss_dssp ------GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT-------------TSCBC-TTCCHHHHHH--TCTTCCHH
T ss_pred ------ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh-------------cCCCc-chhhHHHHHH--HccCCcHH
Confidence 13356665 8999999999999999999875211 11222 2224566777 45677789
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 005667 594 GLRSLLENILMDAMYEIP 611 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~~ 611 (684)
.|+.++++....++.+..
T Consensus 410 dL~~L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 410 DLAALCSEAALQAIRKKM 427 (489)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999998888876643
No 40
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.71 E-value=2.8e-16 Score=165.36 Aligned_cols=204 Identities=22% Similarity=0.270 Sum_probs=126.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-------CEEEEeccccc----------------------------cccccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV-------PFVIADATTLT----------------------------QAGYVGED 375 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~-------pfv~v~~s~l~----------------------------~~gyvG~~ 375 (684)
.++||+||||||||++|+++++.++. +| +|.... ...++|..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccchhhhhccccccCCCcccccCCCcchhhheeec
Confidence 68999999999999999999998862 21 222111 01122211
Q ss_pred -hHHHHHHH-HhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCe
Q 005667 376 -VESILYKL-LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN 453 (684)
Q Consensus 376 -~~~~l~~l-~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~ 453 (684)
....+... .....+.+..+.++|||||||+.+..+ +++.|++.|+.....+...|. .
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~-------~ 181 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGL-------S 181 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTC-------C
T ss_pred hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecce-------E
Confidence 00100000 111233445567899999999999887 999999999844333322221 1
Q ss_pred EEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccce
Q 005667 454 IQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV 533 (684)
Q Consensus 454 i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~ 533 (684)
.. ...++++|+|+|..+ ..+.++|++||+.
T Consensus 182 ~~-~~~~~~li~~~n~~~-------------------------------------------------~~l~~~L~~R~~~ 211 (350)
T 1g8p_A 182 IR-HPARFVLVGSGNPEE-------------------------------------------------GDLRPQLLDRFGL 211 (350)
T ss_dssp EE-EECCEEEEEEECSCS-------------------------------------------------CCCCHHHHTTCSE
T ss_pred Ee-eCCceEEEEEeCCCC-------------------------------------------------CCCCHHHHhhcce
Confidence 11 223677888776311 1266899999998
Q ss_pred EEEcCCC-CHHHHHHHHhchHHH----------------HHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCC-ChHHH
Q 005667 534 LVSLLAL-TENQLVQVLTEPKNA----------------LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-GARGL 595 (684)
Q Consensus 534 iI~f~pL-s~eel~~Il~~~l~~----------------L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~-GAR~L 595 (684)
.+.+.++ ..++..+|+...+.. ..+++..........+.++++++++|++.++..+. ++|.+
T Consensus 212 ~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~ 291 (350)
T 1g8p_A 212 SVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGE 291 (350)
T ss_dssp EEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 8999999 466666787652110 00111101111122468999999999998766555 68999
Q ss_pred HHHHHHHHHHHHh
Q 005667 596 RSLLENILMDAMY 608 (684)
Q Consensus 596 r~iIe~~l~~al~ 608 (684)
.++++.+...+..
T Consensus 292 ~~ll~~a~~~A~~ 304 (350)
T 1g8p_A 292 LTLLRSARALAAL 304 (350)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999987665543
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.69 E-value=1.4e-16 Score=176.44 Aligned_cols=191 Identities=27% Similarity=0.344 Sum_probs=132.9
Q ss_pred ccChHHHH---HHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 279 VIGQERAK---KVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 279 VvGQd~aK---~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
++||++++ +.|..++... ...++||+||||||||++|++||+.++
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~--------------------------------~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAG--------------------------------HLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHT--------------------------------CCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred hCCcHHHHhchHHHHHHHHcC--------------------------------CCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 79999999 7777776410 015899999999999999999999999
Q ss_pred CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhC
Q 005667 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.+++.... ...++..+..+........++||||||||.+... .|+.||+.||.
T Consensus 76 ~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~ 132 (447)
T 3pvs_A 76 ADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED 132 (447)
T ss_dssp CEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT
T ss_pred CCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc
Confidence 999999875421 1223444443332223456789999999999877 89999999982
Q ss_pred ceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccc
Q 005667 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
. .+++|++++...
T Consensus 133 ~-----------------------~v~lI~att~n~-------------------------------------------- 145 (447)
T 3pvs_A 133 G-----------------------TITFIGATTENP-------------------------------------------- 145 (447)
T ss_dssp T-----------------------SCEEEEEESSCG--------------------------------------------
T ss_pred C-----------------------ceEEEecCCCCc--------------------------------------------
Confidence 1 144555433110
Q ss_pred hHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHH
Q 005667 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 516 ~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~L 595 (684)
...+.+.|++|+. ++.|.+++.+++.+++...+....+. ..+..+.+++++++.|++. +++++|.+
T Consensus 146 ----~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~------~~~~~~~i~~~al~~L~~~---~~Gd~R~l 211 (447)
T 3pvs_A 146 ----SFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRG------YGGQDIVLPDETRRAIAEL---VNGDARRA 211 (447)
T ss_dssp ----GGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTS------STTSSEECCHHHHHHHHHH---HCSCHHHH
T ss_pred ----ccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhh------hccccCcCCHHHHHHHHHH---CCCCHHHH
Confidence 0125688899987 67799999999999998643221100 0114678999999999996 68889999
Q ss_pred HHHHHHHHHH
Q 005667 596 RSLLENILMD 605 (684)
Q Consensus 596 r~iIe~~l~~ 605 (684)
.++++.++..
T Consensus 212 ln~Le~a~~~ 221 (447)
T 3pvs_A 212 LNTLEMMADM 221 (447)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 42
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.69 E-value=1.1e-16 Score=167.33 Aligned_cols=159 Identities=15% Similarity=0.215 Sum_probs=102.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccch
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~ 409 (684)
+.++||+||||||||++|+++|+.++.+|+.++++++. ..|+|.. ...++..+..+........++||||||||++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 47999999999999999999999999999999999987 5688876 667777777653333345789999999999988
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCc
Q 005667 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~ 489 (684)
.++. ........+.+++.|+++||+.... ...+........++++|+|+|..+
T Consensus 114 ~~~~-~~~~~~~~~~v~~~Ll~~ld~~~~~--------~~~~~~~~~~~~~v~vI~ttN~~~------------------ 166 (293)
T 3t15_A 114 RMGG-TTQYTVNNQMVNATLMNIADNPTNV--------QLPGMYNKQENARVPIIVTGNDFS------------------ 166 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCC------------------
T ss_pred CCCC-CccccchHHHHHHHHHHHhcccccc--------ccccccccccCCCcEEEEecCCcc------------------
Confidence 5332 2222334556899999999842211 000101123456788999988432
Q ss_pred ccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccc--cccceEEEcCCCCHHHHHHHHhc
Q 005667 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl--~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
.+.|+|+ +||+.++.+ ++.++..+|++.
T Consensus 167 --------------------------------~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~ 196 (293)
T 3t15_A 167 --------------------------------TLYAPLIRDGRMEKFYWA--PTREDRIGVCTG 196 (293)
T ss_dssp --------------------------------C--CHHHHHHHEEEEEEC--CCHHHHHHHHHH
T ss_pred --------------------------------cCCHHHhCCCCCceeEeC--cCHHHHHHHHHH
Confidence 1335566 589987764 399999999874
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=2e-16 Score=162.22 Aligned_cols=176 Identities=23% Similarity=0.291 Sum_probs=118.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccch---HHHHHHHHhhcchhhHhhcCCEEEEccccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDV---ESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~---~~~l~~l~~~a~~~v~~a~~gVLfIDEIDk 406 (684)
+.++||+||||||||++|+++|+.++.+|+.+++++. ++|... ...++.++..+. ...++||||||||.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAY----KSQLSCVVVDDIER 135 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHH----TSSEEEEEECCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHH----hcCCcEEEEEChhh
Confidence 4799999999999999999999999999999998753 344332 233444444321 23578999999999
Q ss_pred cchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCC
Q 005667 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 L~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IG 486 (684)
+...+.. .......+++.|+..+++.. -...++++|+|+|..+
T Consensus 136 l~~~~~~----~~~~~~~~l~~L~~~~~~~~------------------~~~~~~~ii~ttn~~~--------------- 178 (272)
T 1d2n_A 136 LLDYVPI----GPRFSNLVLQALLVLLKKAP------------------PQGRKLLIIGTTSRKD--------------- 178 (272)
T ss_dssp HTTCBTT----TTBCCHHHHHHHHHHTTCCC------------------STTCEEEEEEEESCHH---------------
T ss_pred hhccCCC----ChhHHHHHHHHHHHHhcCcc------------------CCCCCEEEEEecCChh---------------
Confidence 9654221 11122346777777766210 0123466777766321
Q ss_pred cCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCc-ccccccceEEEcCCCCH-HHHHHHHhchHHHHHHHHHHHH
Q 005667 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIP-EFVGRFPVLVSLLALTE-NQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~P-eLl~R~d~iI~f~pLs~-eel~~Il~~~l~~L~kqy~~~l 564 (684)
.+ .+ .+.+||+..+.+++++. +++.+++..
T Consensus 179 ----------------------~l-------------~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~------------- 210 (272)
T 1d2n_A 179 ----------------------VL-------------QEMEMLNAFSTTIHVPNIATGEQLLEALEL------------- 210 (272)
T ss_dssp ----------------------HH-------------HHTTCTTTSSEEEECCCEEEHHHHHHHHHH-------------
T ss_pred ----------------------hc-------------chhhhhcccceEEcCCCccHHHHHHHHHHh-------------
Confidence 00 01 45678999999999987 777776653
Q ss_pred hhCCcceecCHHHHHHHHHhc--CCCCCChHHHHHHHHHHH
Q 005667 565 QMNGVKLHFTENALRLIAKKA--ISKNTGARGLRSLLENIL 603 (684)
Q Consensus 565 ~~~gi~l~i~eeAl~~La~~a--y~~~~GAR~Lr~iIe~~l 603 (684)
...+++++++.+++.. |.|++++|.+.++++.+.
T Consensus 211 -----~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 211 -----LGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp -----HTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred -----cCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 1246899999998764 556778999999998653
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.66 E-value=7.8e-16 Score=162.02 Aligned_cols=230 Identities=23% Similarity=0.260 Sum_probs=148.8
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005667 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAr 348 (684)
..+...+.+.|+||+++++.+..++.. ..++||+||||||||++|+
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~----------------------------------~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICT----------------------------------GGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHH----------------------------------TCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHc----------------------------------CCeEEEECCCCCcHHHHHH
Confidence 347777888899999999988877641 1699999999999999999
Q ss_pred HHHHHhCCCEEEEeccc-cccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHH
Q 005667 349 TLARYVNVPFVIADATT-LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 349 aIA~~l~~pfv~v~~s~-l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~ 427 (684)
++|+.++.+++.++++. .....++|..........+...++. -..+|||||||+.+... +++
T Consensus 65 ~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~---l~~~vl~iDEi~~~~~~--------------~~~ 127 (331)
T 2r44_A 65 TLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGP---VFSNFILADEVNRSPAK--------------VQS 127 (331)
T ss_dssp HHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECT---TCSSEEEEETGGGSCHH--------------HHH
T ss_pred HHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCc---ccccEEEEEccccCCHH--------------HHH
Confidence 99999999999999852 2211122221000000000000010 02479999999999877 999
Q ss_pred HHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHh
Q 005667 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~ 507 (684)
.|++.|+...+.+ .|.. .. ...++++|+|.|..+. .|
T Consensus 128 ~Ll~~l~~~~~~~--~g~~-------~~-~~~~~~viat~np~~~------------~~--------------------- 164 (331)
T 2r44_A 128 ALLECMQEKQVTI--GDTT-------YP-LDNPFLVLATQNPVEQ------------EG--------------------- 164 (331)
T ss_dssp HHHHHHHHSEEEE--TTEE-------EE-CCSSCEEEEEECTTCC------------SC---------------------
T ss_pred HHHHHHhcCceee--CCEE-------EE-CCCCEEEEEecCCCcc------------cC---------------------
Confidence 9999999555543 1211 11 2234667766663210 00
Q ss_pred HHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHH-------------HHHHHHHHHhhCCcceecC
Q 005667 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA-------------LGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 508 ~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~-------------L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.++|++||+..+.+.+++.++..+|++..... -....++.. ..+.++
T Consensus 165 ------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~v~~~ 228 (331)
T 2r44_A 165 ------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI----NKVTIS 228 (331)
T ss_dssp ------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH----HTCBCC
T ss_pred ------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh----ccCCCC
Confidence 012668999999988999999999999998764321 011111111 256789
Q ss_pred HHHHHHHHHhcC-----------------CCCCChHHHHHHHHHHHHHHHh
Q 005667 575 ENALRLIAKKAI-----------------SKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 575 eeAl~~La~~ay-----------------~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
+++++++++... ..+.+.|.+.++++..-..+..
T Consensus 229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l 279 (331)
T 2r44_A 229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF 279 (331)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH
Confidence 999999987531 1244689999988866554443
No 45
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=157.36 Aligned_cols=224 Identities=20% Similarity=0.267 Sum_probs=147.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|.|.+++|+.|.+.+..++.....-.. .++.. +.+++|+||||||||+|++++|..++.++
T Consensus 12 i~g~~~~~~~l~~~i~~~~~~~~~l~~------------------~~l~~-~~GvlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 12 IGALEDIREELTMAILAPVRNPDQFKA------------------LGLVT-PAGVLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp CCHHHHHHHHHHHHHTHHHHSHHHHHH------------------TTCCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHhhCHHHHHH------------------cCCCC-CCeEEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 799999999999988755543211100 01112 25699999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++.++. ..|.|+. +..+..+|+.+. ...++++|+||+|.+...+..... + ...++.+.++..|+|..-
T Consensus 73 i~i~g~~l~-~~~~~~~-~~~i~~vf~~a~----~~~p~i~~~Deid~~~~~r~~~~~--~-~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 73 ISVKGPELL-NMYVGES-ERAVRQVFQRAK----NSAPCVIFFDEVDALCPRRSDRET--G-ASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp EEEETTTTC-SSTTHHH-HHHHHHHHHHHH----HTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCS
T ss_pred EEEEcHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCCeEeeehhhhhhcccCCCcc--h-HHHHHHHHHHHhhhcccc
Confidence 999998886 4466665 566777776542 235789999999998765432111 1 112378889999984211
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
.+.+++++++|..+
T Consensus 144 -------------------~~~~i~ia~tn~p~----------------------------------------------- 157 (274)
T 2x8a_A 144 -------------------RQQVFIMAATNRPD----------------------------------------------- 157 (274)
T ss_dssp -------------------TTCEEEEEEESCGG-----------------------------------------------
T ss_pred -------------------cCCEEEEeecCChh-----------------------------------------------
Confidence 12345555555221
Q ss_pred HHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC-HHHHHHHHHhcCCCCCChHHH
Q 005667 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 ~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~-eeAl~~La~~ay~~~~GAR~L 595 (684)
-+.|+++. |||..|.++.++.++..+|++..+ + .+....++ +..++.|+......++....|
T Consensus 158 ---~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~-----------~-~~~~~~~~~~~~~~~la~~~~~~g~sgadl 222 (274)
T 2x8a_A 158 ---IIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT-----------K-NGTKPPLDADVNLEAIAGDLRCDCYTGADL 222 (274)
T ss_dssp ---GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT-----------T-TTBTTBBCTTCCHHHHHTCSGGGSCCHHHH
T ss_pred ---hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH-----------h-cccCCCCccccCHHHHHHhhccCCcCHHHH
Confidence 13366664 999999999999999999987521 1 11111221 223556666422347778999
Q ss_pred HHHHHHHHHHHHhcCC
Q 005667 596 RSLLENILMDAMYEIP 611 (684)
Q Consensus 596 r~iIe~~l~~al~e~~ 611 (684)
.+++++....++.+..
T Consensus 223 ~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 223 SALVREASICALRQEM 238 (274)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888876543
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.65 E-value=2e-15 Score=158.20 Aligned_cols=191 Identities=18% Similarity=0.234 Sum_probs=136.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++|++++++.|..++... ..+..+|+.||||||||++|+++|+.++.++
T Consensus 28 ivg~~~~~~~l~~~l~~~-------------------------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~ 76 (324)
T 3u61_B 28 CILPAFDKETFKSITSKG-------------------------------KIPHIILHSPSPGTGKTTVAKALCHDVNADM 76 (324)
T ss_dssp SCCCHHHHHHHHHHHHTT-------------------------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEE
T ss_pred HhCcHHHHHHHHHHHHcC-------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCE
Confidence 689999999998887510 0125678889999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccc-hhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~-~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
+.+++++.. .......+.......+. ...+.||||||+|.+. .+ .++.|++.|+.
T Consensus 77 ~~i~~~~~~-----~~~i~~~~~~~~~~~~~---~~~~~vliiDEi~~l~~~~--------------~~~~L~~~le~-- 132 (324)
T 3u61_B 77 MFVNGSDCK-----IDFVRGPLTNFASAASF---DGRQKVIVIDEFDRSGLAE--------------SQRHLRSFMEA-- 132 (324)
T ss_dssp EEEETTTCC-----HHHHHTHHHHHHHBCCC---SSCEEEEEEESCCCGGGHH--------------HHHHHHHHHHH--
T ss_pred EEEcccccC-----HHHHHHHHHHHHhhccc---CCCCeEEEEECCcccCcHH--------------HHHHHHHHHHh--
Confidence 999986632 11112222222222111 1256899999999998 65 89999999982
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
...++.||+++|...
T Consensus 133 -------------------~~~~~~iI~~~n~~~---------------------------------------------- 147 (324)
T 3u61_B 133 -------------------YSSNCSIIITANNID---------------------------------------------- 147 (324)
T ss_dssp -------------------HGGGCEEEEEESSGG----------------------------------------------
T ss_pred -------------------CCCCcEEEEEeCCcc----------------------------------------------
Confidence 113466777766311
Q ss_pred HHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH-HHHHHHHHhcCCCCCChHHHH
Q 005667 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 518 l~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e-eAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.+.+++|+. ++.|.+++.+++.+|+...+..+.+.. ... .+.+++ ++++.|++. +++++|.+.
T Consensus 148 ----~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~----~~~--~~~~~~~~~~~~l~~~---~~gd~R~a~ 213 (324)
T 3u61_B 148 ----GIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEIC----KHE--GIAIADMKVVAALVKK---NFPDFRKTI 213 (324)
T ss_dssp ----GSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHH----HHH--TCCBSCHHHHHHHHHH---TCSCTTHHH
T ss_pred ----ccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHH----HHc--CCCCCcHHHHHHHHHh---CCCCHHHHH
Confidence 15588889996 799999999999888887555544332 222 456777 999999996 467789988
Q ss_pred HHHHHHH
Q 005667 597 SLLENIL 603 (684)
Q Consensus 597 ~iIe~~l 603 (684)
+.++.+.
T Consensus 214 ~~L~~~~ 220 (324)
T 3u61_B 214 GELDSYS 220 (324)
T ss_dssp HHHHHHG
T ss_pred HHHHHHh
Confidence 8888765
No 47
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.63 E-value=1e-14 Score=147.93 Aligned_cols=217 Identities=26% Similarity=0.330 Sum_probs=138.3
Q ss_pred ccChHHHHHHHHHHHHhhHHh--HhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 279 VIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~r--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
|+|++++++.+...+.. +.. .... ..+.. +.+++|+||||||||+++++++..++.
T Consensus 18 i~g~~~~~~~l~~l~~~-~~~~~~~~~--------------------~~~~~-~~g~ll~G~~G~GKTtl~~~i~~~~~~ 75 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEF-LKNPSRFHE--------------------MGARI-PKGVLLVGPPGVGKTHLARAVAGEARV 75 (254)
T ss_dssp CCSCHHHHHHHHHHHHH-HHCHHHHHH--------------------TTCCC-CSEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred hCCcHHHHHHHHHHHHH-HHCHHHHHH--------------------cCCCC-CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 79999999999887652 221 0100 01112 256999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+++.+++.++.. .+.+.. ...+..+++.+.. ..++++++||||.+...+.....+.+......++.++..|+|.
T Consensus 76 ~~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~ 149 (254)
T 1ixz_A 76 PFITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 149 (254)
T ss_dssp CEEEEEHHHHHH-SCTTHH-HHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC
T ss_pred CEEEeeHHHHHH-HHhhHH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC
Confidence 999999887752 345544 3455566655321 2468999999999876543211111222345778888888842
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccch
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
.- .+.++++++.+..+
T Consensus 150 ~~-------------------~~~~i~~a~t~~p~--------------------------------------------- 165 (254)
T 1ixz_A 150 EK-------------------DTAIVVMAATNRPD--------------------------------------------- 165 (254)
T ss_dssp CT-------------------TCCEEEEEEESCGG---------------------------------------------
T ss_pred CC-------------------CCCEEEEEccCCch---------------------------------------------
Confidence 10 11245555544211
Q ss_pred HHHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHH-HHHHHHhcCCCCCChH
Q 005667 517 DLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGAR 593 (684)
Q Consensus 517 dl~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeA-l~~La~~ay~~~~GAR 593 (684)
.+.|.++. ||+..+.++.++.++..+|++... . .+.+++++ +..++.. ..++.+|
T Consensus 166 -----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-------------~--~~~~~~~~~~~~la~~--~~G~~~~ 223 (254)
T 1ixz_A 166 -----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAKR--TPGFVGA 223 (254)
T ss_dssp -----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH-------------T--TSCBCTTCCHHHHHHT--CTTCCHH
T ss_pred -----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH-------------c--CCCCCcccCHHHHHHH--cCCCCHH
Confidence 13356665 899999999999999999886421 1 22344333 6677773 3344569
Q ss_pred HHHHHHHHHHHHHHhc
Q 005667 594 GLRSLLENILMDAMYE 609 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e 609 (684)
+|+++++++...+..+
T Consensus 224 dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 224 DLENLLNEAALLAARE 239 (254)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988777543
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.62 E-value=1.2e-14 Score=140.68 Aligned_cols=186 Identities=23% Similarity=0.307 Sum_probs=129.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---- 354 (684)
++|++++++.+...+... ...+++|+||||||||++|+++++.+
T Consensus 19 ~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred HcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 689999999998887510 01469999999999999999999876
Q ss_pred -CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHH
Q 005667 355 -NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 355 -~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
...++.++++..... ......+........ .....+.||+|||+|.+... .++.|++++
T Consensus 67 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l 126 (226)
T 2chg_A 67 WRDNFIEMNASDERGI----DVVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRTM 126 (226)
T ss_dssp GGGGEEEEETTCTTCH----HHHHHHHHHHHTSCC--STTCSCEEEEEETGGGSCHH--------------HHHHHHHHH
T ss_pred cccceEEeccccccCh----HHHHHHHHHHhcccC--CCccCceEEEEeChhhcCHH--------------HHHHHHHHH
Confidence 356888887654311 011122222222111 11246789999999999876 788999999
Q ss_pred hCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhc
Q 005667 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 434 Eg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v 513 (684)
+.. ..++.+|++++...
T Consensus 127 ~~~---------------------~~~~~~i~~~~~~~------------------------------------------ 143 (226)
T 2chg_A 127 EMY---------------------SKSCRFILSCNYVS------------------------------------------ 143 (226)
T ss_dssp HHT---------------------TTTEEEEEEESCGG------------------------------------------
T ss_pred Hhc---------------------CCCCeEEEEeCChh------------------------------------------
Confidence 820 12355566654210
Q ss_pred cchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChH
Q 005667 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 514 ~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR 593 (684)
.+.+.+.+|+. ++.|.+++.+++.+++...+.. . .+.+++++++.|++. ++++.|
T Consensus 144 --------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~~~~~~~l~~~---~~g~~r 198 (226)
T 2chg_A 144 --------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK-----------E--GVKITEDGLEALIYI---SGGDFR 198 (226)
T ss_dssp --------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-----------H--TCCBCHHHHHHHHHH---HTTCHH
T ss_pred --------hcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHH---cCCCHH
Confidence 14477888887 8999999999999888753221 1 455899999999975 367889
Q ss_pred HHHHHHHHHHH
Q 005667 594 GLRSLLENILM 604 (684)
Q Consensus 594 ~Lr~iIe~~l~ 604 (684)
.+.++++++..
T Consensus 199 ~l~~~l~~~~~ 209 (226)
T 2chg_A 199 KAINALQGAAA 209 (226)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 49
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=1.2e-16 Score=183.04 Aligned_cols=256 Identities=19% Similarity=0.191 Sum_probs=150.8
Q ss_pred HHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005667 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 270 el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAra 349 (684)
.+.+.+...|+||+.+|+.+..++..... + . ..+ .......++||+||||||||++|++
T Consensus 288 ~l~~~l~~~I~G~e~vk~al~~~l~~g~~-------~--~-----------~~~-~~~r~~~~vLL~GppGtGKT~LAr~ 346 (595)
T 3f9v_A 288 RIISSIAPSIYGHWELKEALALALFGGVP-------K--V-----------LED-TRIRGDIHILIIGDPGTAKSQMLQF 346 (595)
T ss_dssp THHHHTSSTTSCCHHHHHHHTTTTTCCCC-------E--E-----------TTT-TEECCSCCEEEEESSCCTHHHHHHS
T ss_pred HHHHhhcchhcChHHHHHHHHHHHhCCCc-------c--c-----------ccC-CCcCCCcceEEECCCchHHHHHHHH
Confidence 37778888899999999888655431100 0 0 000 1111225999999999999999999
Q ss_pred HHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHH
Q 005667 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 350 IA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+|+.+...++.... .....++.+..............++.+..+.+|||||||||++.++ +|+.|
T Consensus 347 la~~~~r~~~~~~~-~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~--------------~q~~L 411 (595)
T 3f9v_A 347 ISRVAPRAVYTTGK-GSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE--------------DRVAI 411 (595)
T ss_dssp SSTTCSCEECCCTT-CSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------HHHHH
T ss_pred HHHhCCCceecCCC-ccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------Hhhhh
Confidence 99998665443211 1111223332211111111122234455677899999999999887 99999
Q ss_pred HHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHH
Q 005667 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~l 509 (684)
+++||...+.+...|... . ...++.+|+|+|... +.++.... +
T Consensus 412 l~~le~~~i~i~~~g~~~-------~-~~~~~~vIaatNp~~-------G~~~~~~~----------------------~ 454 (595)
T 3f9v_A 412 HEAMEQQTVSIAKAGIVA-------K-LNARAAVIAAGNPKF-------GRYISERP----------------------V 454 (595)
T ss_dssp HHHHHSSSEEEESSSSEE-------E-ECCCCEEEEEECCTT-------CCSCTTSC----------------------S
T ss_pred HHHHhCCEEEEecCCcEE-------E-ecCceEEEEEcCCcC-------CccCcccC----------------------c
Confidence 999996666553333221 1 224577888877431 11110000 0
Q ss_pred hhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHH-------------HHHHHHHHHHhhCCcceecCHH
Q 005667 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN-------------ALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 510 l~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~-------------~L~kqy~~~l~~~gi~l~i~ee 576 (684)
.+. -.+.++|++|||.++.+.++..++...|+++.+. ...++|....+ ..+...++++
T Consensus 455 ~~n--------i~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~ls~e 525 (595)
T 3f9v_A 455 SDN--------INLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR-KYVTPKITSE 525 (595)
T ss_dssp CTT--------TCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH-HHHCCCCCCC
T ss_pred hhc--------cCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH-HhCCCCCCHH
Confidence 011 1378999999998777777766554444443221 11222322111 1123368889
Q ss_pred HHHHHHHhcC------------CCCCChHHHHHHHHHHHHHHH
Q 005667 577 ALRLIAKKAI------------SKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 577 Al~~La~~ay------------~~~~GAR~Lr~iIe~~l~~al 607 (684)
+.+.|.+... .++..+|.|.++++-.-..|.
T Consensus 526 a~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~ 568 (595)
T 3f9v_A 526 AKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAK 568 (595)
T ss_dssp THHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHH
Confidence 9999998632 367789999999986555443
No 50
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.61 E-value=1.1e-14 Score=150.07 Aligned_cols=219 Identities=25% Similarity=0.305 Sum_probs=134.6
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.|+|++++++.+...+.. +..... . ....+..+ .+++|+||||||||+++++++..++.+
T Consensus 41 ~i~g~~~~~~~l~~l~~~-~~~~~~-l-----------------~~~~~~~~-~gvll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEF-LKNPSR-F-----------------HEMGARIP-KGVLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp GSSSCHHHHHHHHHHHHH-HHCHHH-H-----------------HHTTCCCC-CEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCChHHHHHHHHHHHHH-HHCHHH-H-----------------HHcCCCCC-CeEEEECCCcChHHHHHHHHHHHcCCC
Confidence 379999999999887652 211000 0 00011122 469999999999999999999999999
Q ss_pred EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCce
Q 005667 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
++.+++.++.. .+.+.. ...+..+++.+. ...++++|+||||.+...+...........+...+.++..|+|..
T Consensus 101 ~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~----~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 101 FITASGSDFVE-MFVGVG-AARVRDLFETAK----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp EEEEEHHHHHH-STTTHH-HHHHHHHHHHHH----TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred EEEecHHHHHH-HHhhHH-HHHHHHHHHHHH----hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 99999887752 244443 344555555432 124689999999998765432111111222346667777776321
Q ss_pred eeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchH
Q 005667 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~d 517 (684)
..+.++++++.+..+
T Consensus 175 -------------------~~~~~i~~a~t~~p~---------------------------------------------- 189 (278)
T 1iy2_A 175 -------------------KDTAIVVMAATNRPD---------------------------------------------- 189 (278)
T ss_dssp -------------------TTCCEEEEEEESCTT----------------------------------------------
T ss_pred -------------------CCCCEEEEEecCCch----------------------------------------------
Confidence 012245555544211
Q ss_pred HHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHH-HHHHHHhcCCCCCChHH
Q 005667 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 l~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeA-l~~La~~ay~~~~GAR~ 594 (684)
.+.|.++. ||+.++.++.++.++..+|++..+ + .+.+++++ +..++.. ..+...|+
T Consensus 190 ----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-----------~----~~~~~~~~~~~~la~~--~~G~~~~d 248 (278)
T 1iy2_A 190 ----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-----------R----GKPLAEDVDLALLAKR--TPGFVGAD 248 (278)
T ss_dssp ----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-----------T----TSCBCTTCCHHHHHHT--CTTCCHHH
T ss_pred ----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH-----------c----cCCCCcccCHHHHHHH--cCCCCHHH
Confidence 12355554 899999999999999999987421 1 22344443 6666663 23334599
Q ss_pred HHHHHHHHHHHHHh
Q 005667 595 LRSLLENILMDAMY 608 (684)
Q Consensus 595 Lr~iIe~~l~~al~ 608 (684)
|+++++++...+..
T Consensus 249 l~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 249 LENLLNEAALLAAR 262 (278)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877654
No 51
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.60 E-value=2e-17 Score=168.75 Aligned_cols=216 Identities=25% Similarity=0.316 Sum_probs=132.4
Q ss_pred ccChHHHHHHHHHHHHhhHHh--HhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 279 VIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~r--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
++|++.+++.|..++.. +.. .+.... . ..+.++||+||||||||++|+++|+.++.
T Consensus 13 i~G~~~~~~~l~~~~~~-~~~~~~~~~~~------~---------------~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDF-LKYPERYANLG------A---------------KIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp SSSCTTTHHHHHHHHHH-HHCHHHHHHHS------C---------------CCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred hCCcHHHHHHHHHHHHH-HHChHHHHHCC------C---------------CCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 79999999999987752 111 111000 0 11367999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccc-cCCCCchHHHHHHHHHHHhC
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN-ISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~-~~~d~~~e~vq~~LL~~LEg 435 (684)
+++.++++++. ..+.|.. ...++.++..+. ...++||||||+|.+...+...+ .+.+.....+++.|+..|++
T Consensus 71 ~~~~v~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 71 PFFSMGGSSFI-EMFVGLG-ASRVRDLFETAK----KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp CCCCCCSCTTT-TSCSSSC-SSSSSTTHHHHH----HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred CEEEechHHHH-HhhcchH-HHHHHHHHHHHH----hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 99999998876 3455554 222233333221 23568999999999987653221 11122222366777777763
Q ss_pred ceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccc
Q 005667 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~ 515 (684)
.. -...++++|+|+|..+
T Consensus 145 ~~------------------~~~~~v~vi~ttn~~~-------------------------------------------- 162 (268)
T 2r62_A 145 FG------------------SENAPVIVLAATNRPE-------------------------------------------- 162 (268)
T ss_dssp SS------------------CSCSCCEEEECBSCCT--------------------------------------------
T ss_pred cc------------------cCCCCEEEEEecCCch--------------------------------------------
Confidence 10 0123477777776321
Q ss_pred hHHHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChH
Q 005667 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dl~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR 593 (684)
.+.|.++. ||+..+.+..++.++..+|++..+ +.. .+. ++..++.|++. ..++..|
T Consensus 163 ------~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~-----------~~~--~~~-~~~~~~~la~~--~~g~~g~ 220 (268)
T 2r62_A 163 ------ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI-----------KGV--KLA-NDVNLQEVAKL--TAGLAGA 220 (268)
T ss_dssp ------TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT-----------SSS--CCC-SSCCTTTTTSS--SCSSCHH
T ss_pred ------hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH-----------hcC--CCC-CccCHHHHHHH--cCCCCHH
Confidence 13355555 898889999999999999886421 111 111 22224455553 3344458
Q ss_pred HHHHHHHHHHHHH
Q 005667 594 GLRSLLENILMDA 606 (684)
Q Consensus 594 ~Lr~iIe~~l~~a 606 (684)
+|+++++++...+
T Consensus 221 dl~~l~~~a~~~a 233 (268)
T 2r62_A 221 DLANIINEAALLA 233 (268)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876544
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.60 E-value=1.8e-14 Score=159.44 Aligned_cols=104 Identities=27% Similarity=0.349 Sum_probs=77.1
Q ss_pred ccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC-
Q 005667 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN- 355 (684)
Q Consensus 277 ~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~- 355 (684)
+.|+||+++++.+...+.. +..+ ..+++++||+||||||||++|+++|+.++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~----~~~~-----------------------~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVEL----IKSK-----------------------KMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTEESCHHHHHHHHHHHHH----HHTT-----------------------CCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhccCHHHHHHHHHHHHHH----HHhC-----------------------CCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 3479999999998877741 1100 01347999999999999999999999998
Q ss_pred -CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhc
Q 005667 356 -VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 356 -~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r 411 (684)
.+|+.++++++. ..|+|+. +. +...|..+.. .....++||||||||.+...+
T Consensus 90 ~~~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r 142 (456)
T 2c9o_A 90 KVPFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCE 142 (456)
T ss_dssp TSCEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC-
T ss_pred CceEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhccccc
Confidence 899999999987 5688876 44 7777776521 122456788888888777554
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.58 E-value=1.4e-14 Score=152.25 Aligned_cols=172 Identities=15% Similarity=0.254 Sum_probs=114.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
.+++|+||||||||++|+++++.+ +.+++.+++.++.. .+.+.........+.. ....++|||||||+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHLKKGTINEFRN------MYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHHHHTCHHHHHH------HHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHHHcCcHHHHHH------HhcCCCEEEEcCcccc
Confidence 689999999999999999999988 88999999876641 1111110000011110 0124689999999999
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
...+ ..++.|+..++.. ...+..+|++++... .
T Consensus 111 ~~~~------------~~~~~l~~~l~~~--------------------~~~~~~iii~~~~~~-~-------------- 143 (324)
T 1l8q_A 111 SGKE------------RTQIEFFHIFNTL--------------------YLLEKQIILASDRHP-Q-------------- 143 (324)
T ss_dssp TTCH------------HHHHHHHHHHHHH--------------------HHTTCEEEEEESSCG-G--------------
T ss_pred cCCh------------HHHHHHHHHHHHH--------------------HHCCCeEEEEecCCh-H--------------
Confidence 7631 1677777777611 011122333433110 0
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHh
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~ 565 (684)
.+ ..+.+.|++|++ .++.+++ +.+++.+|+...+..
T Consensus 144 ---------------------~l----------~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~---------- 181 (324)
T 1l8q_A 144 ---------------------KL----------DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE---------- 181 (324)
T ss_dssp ---------------------GC----------TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH----------
T ss_pred ---------------------HH----------HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh----------
Confidence 00 025588889996 7899999 999999998864321
Q ss_pred hCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 005667 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~ 605 (684)
. .+.++++++++|++.. +++|+|.+++++++..
T Consensus 182 -~--~~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 182 -F--NLELRKEVIDYLLENT----KNVREIEGKIKLIKLK 214 (324)
T ss_dssp -T--TCCCCHHHHHHHHHHC----SSHHHHHHHHHHHHHH
T ss_pred -c--CCCCCHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 1 4678999999999963 7799999999988765
No 54
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.57 E-value=2.9e-17 Score=194.05 Aligned_cols=224 Identities=21% Similarity=0.247 Sum_probs=151.9
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccc-cccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE-LEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
.++|++.+|+.|.+++..+..+.. ...... .++.++||+||||||||++|+++|+.++.
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~--------------------~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPD--------------------KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCT--------------------TTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhHHHHHHhhhhchH--------------------HHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 479999999999887742221100 000111 23478999999999999999999999999
Q ss_pred CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCc
Q 005667 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.++++++. ..|+|+. +..++.+|+.+.. ..++||||||||.+...++......+....+++++||..|++.
T Consensus 538 ~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 538 NFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp CCCCCCCSSST-TCCTTTS-SHHHHHHHHHHHH----HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred CEEEEechHhh-hhhcCcc-HHHHHHHHHHHHh----cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 99999999987 5689987 5677777776543 4678999999999988754321111223446889999999842
Q ss_pred eeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccch
Q 005667 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~ 516 (684)
....++++|+|+|..+
T Consensus 612 -------------------~~~~~v~vI~tTN~~~--------------------------------------------- 627 (806)
T 1ypw_A 612 -------------------STKKNVFIIGATNRPD--------------------------------------------- 627 (806)
T ss_dssp -----------------------CCBCCCCCBSCG---------------------------------------------
T ss_pred -------------------cccCCeEEEEecCCcc---------------------------------------------
Confidence 1235678888877432
Q ss_pred HHHHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHH
Q 005667 517 DLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 517 dl~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~ 594 (684)
.+.|+|+. ||+.++.|+.++.++..+|++..+... .+. .+..++.|++. ..++..+.
T Consensus 628 -----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------------~~~-~~~~l~~la~~--t~g~sgad 686 (806)
T 1ypw_A 628 -----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-------------PVA-KDVDLEFLAKM--TNGFSGAD 686 (806)
T ss_dssp -----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------------------CCCCSCSCGG--GSSSCCHH
T ss_pred -----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC-------------CCC-cccCHHHHHHh--ccccCHHH
Confidence 14477777 999999999999999999998753221 000 11112333432 34555688
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 005667 595 LRSLLENILMDAMYEIPD 612 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~~ 612 (684)
|+++++.....++.+..+
T Consensus 687 i~~l~~~a~~~a~~~~~~ 704 (806)
T 1ypw_A 687 LTEICQRACKLAIRESIE 704 (806)
T ss_dssp HHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888888776543
No 55
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.56 E-value=9.5e-14 Score=155.90 Aligned_cols=229 Identities=15% Similarity=0.190 Sum_probs=144.7
Q ss_pred HHHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005667 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAr 348 (684)
..+.+.+.+.|+||+++++.+..++.. ..++||+||||||||++|+
T Consensus 14 ~~l~~~l~~~ivGq~~~i~~l~~al~~----------------------------------~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 14 SRLSSSLEKGLYERSHAIRLCLLAALS----------------------------------GESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHH----------------------------------TCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc----------------------------------CCeeEeecCchHHHHHHHH
Confidence 447888999999999999988877640 2699999999999999999
Q ss_pred HHHHHhC--CCEEEEeccccccccccccchHHHH--HHHHh-hcchhhHhhcCCEEEEccccccchhccccccCCCCchH
Q 005667 349 TLARYVN--VPFVIADATTLTQAGYVGEDVESIL--YKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 349 aIA~~l~--~pfv~v~~s~l~~~gyvG~~~~~~l--~~l~~-~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e 423 (684)
++|+.++ .+|..+++.-.++..++|....... ...+. ...+.+ ..++|||||||+++.++
T Consensus 60 aLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~------------- 124 (500)
T 3nbx_X 60 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPA------------- 124 (500)
T ss_dssp HGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGGGCCHH-------------
T ss_pred HHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHhhhcHH-------------
Confidence 9999884 4666666643222233332111100 11121 111111 14679999999998877
Q ss_pred HHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005667 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~ 503 (684)
+++.|+.+|+...+.+ .|. .......++|+|+|... .
T Consensus 125 -~q~~LL~~lee~~v~i--~G~---------~~~~~~~~iI~ATN~lp-------------------e------------ 161 (500)
T 3nbx_X 125 -ILNTLLTAINERQFRN--GAH---------VEKIPMRLLVAASNELP-------------------E------------ 161 (500)
T ss_dssp -HHHHHHHHHHSSEEEC--SSS---------EEECCCCEEEEEESSCC-------------------C------------
T ss_pred -HHHHHHHHHHHHhccC--CCC---------cCCcchhhhhhccccCC-------------------C------------
Confidence 9999999999666553 121 12222233455555210 0
Q ss_pred hhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCH-HHHHHHHhchHH--------------HHHHHHHHHHhhCC
Q 005667 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN--------------ALGKQYRKMFQMNG 568 (684)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~-eel~~Il~~~l~--------------~L~kqy~~~l~~~g 568 (684)
...+.+++++||...+.+++++. ++..+|+..... .-...++...
T Consensus 162 ----------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~---- 221 (500)
T 3nbx_X 162 ----------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI---- 221 (500)
T ss_dssp ----------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH----
T ss_pred ----------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC----
Confidence 01245789999988899999987 777888876421 1112222222
Q ss_pred cceecCHHHHHHHHHhcC-------CCCCChHHHHHHHHHHHHHHHhc
Q 005667 569 VKLHFTENALRLIAKKAI-------SKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 569 i~l~i~eeAl~~La~~ay-------~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
..+.+++++++++++..- ..+.+.|.+..++...-..|..+
T Consensus 222 ~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 222 GEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 156789999999987641 23557899988887655545443
No 56
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.56 E-value=5.7e-15 Score=138.28 Aligned_cols=97 Identities=21% Similarity=0.285 Sum_probs=73.7
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.++|++.+++.+...+. +.. ....++||+||||||||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~----~~a--------------------------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQ----QLS--------------------------ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp --CCSSHHHHHHHHHHH----HHT--------------------------TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CceeCCHHHHHHHHHHH----HHh--------------------------CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 36899999999888775 110 012689999999999999999999987
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+|+ ++|+.+... .. .... ++.+.+++|||||||.+..+ +|..|+.+|+
T Consensus 52 ~~~~v-~~~~~~~~~----~~----~~~~-------~~~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~ 101 (145)
T 3n70_A 52 QGEFV-YRELTPDNA----PQ----LNDF-------IALAQGGTLVLSHPEHLTRE--------------QQYHLVQLQS 101 (145)
T ss_dssp TSCCE-EEECCTTTS----SC----HHHH-------HHHHTTSCEEEECGGGSCHH--------------HHHHHHHHHH
T ss_pred CCCEE-EECCCCCcc----hh----hhcH-------HHHcCCcEEEEcChHHCCHH--------------HHHHHHHHHh
Confidence 67899 999877532 11 1122 22346689999999999887 9999999996
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=5.2e-14 Score=145.94 Aligned_cols=185 Identities=24% Similarity=0.328 Sum_probs=127.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~--- 355 (684)
++||+++++.|..++... ...++||+||||||||++|+++++.+.
T Consensus 27 ~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTG--------------------------------SMPHLLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp CCSCHHHHHHHHHHHHHT--------------------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 799999999998877511 014699999999999999999999863
Q ss_pred --CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHH
Q 005667 356 --VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 356 --~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
..++.+++++.... ......+.......+ +....+.||+|||+|.+... .++.|++.|
T Consensus 75 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~l 134 (327)
T 1iqp_A 75 WRHNFLELNASDERGI----NVIREKVKEFARTKP--IGGASFKIIFLDEADALTQD--------------AQQALRRTM 134 (327)
T ss_dssp HHHHEEEEETTCHHHH----HTTHHHHHHHHHSCC--GGGCSCEEEEEETGGGSCHH--------------HHHHHHHHH
T ss_pred ccCceEEeeccccCch----HHHHHHHHHHHhhCC--cCCCCCeEEEEeCCCcCCHH--------------HHHHHHHHH
Confidence 24777777653211 011122222222211 22245789999999999876 899999999
Q ss_pred hCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhc
Q 005667 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 434 Eg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v 513 (684)
+.. ..++.||++++...
T Consensus 135 e~~---------------------~~~~~~i~~~~~~~------------------------------------------ 151 (327)
T 1iqp_A 135 EMF---------------------SSNVRFILSCNYSS------------------------------------------ 151 (327)
T ss_dssp HHT---------------------TTTEEEEEEESCGG------------------------------------------
T ss_pred Hhc---------------------CCCCeEEEEeCCcc------------------------------------------
Confidence 821 12345666654210
Q ss_pred cchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChH
Q 005667 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 514 ~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR 593 (684)
.+.+.+.+|+. ++.|.+++.+++.+++...+ ... .+.+++++++.|++.+ +++.|
T Consensus 152 --------~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~-----------~~~--~~~~~~~~~~~l~~~~---~g~~r 206 (327)
T 1iqp_A 152 --------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIA-----------ENE--GLELTEEGLQAILYIA---EGDMR 206 (327)
T ss_dssp --------GSCHHHHHTEE-EEECCCCCHHHHHHHHHHHH-----------HTT--TCEECHHHHHHHHHHH---TTCHH
T ss_pred --------ccCHHHHhhCc-EEEecCCCHHHHHHHHHHHH-----------Hhc--CCCCCHHHHHHHHHHC---CCCHH
Confidence 13466777876 78999999999998887522 112 5568999999999864 67789
Q ss_pred HHHHHHHHHH
Q 005667 594 GLRSLLENIL 603 (684)
Q Consensus 594 ~Lr~iIe~~l 603 (684)
.+.++++...
T Consensus 207 ~~~~~l~~~~ 216 (327)
T 1iqp_A 207 RAINILQAAA 216 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888654
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=1.8e-13 Score=133.38 Aligned_cols=184 Identities=26% Similarity=0.310 Sum_probs=123.3
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
++|++++++.|..++... ..+..++|+||||||||++|+++++.+...
T Consensus 25 ~~g~~~~~~~l~~~l~~~-------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLG-------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp CCSCHHHHHHHHHHHHHT-------------------------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred HhCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 799999999998887410 012579999999999999999999887432
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.++... ......+..++...........+.+|+|||+|.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~---- 141 (250)
T 1njg_A 74 GITATPCGVCDNCREIEQGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH---- 141 (250)
T ss_dssp CSCSSCCSCSHHHHHHHTTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH----
T ss_pred CCCCCCCcccHHHHHHhccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH----
Confidence 12121110 1112334444443221111235689999999999776
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.|++.++.. ..++.+|++++...
T Consensus 142 ----------~~~~l~~~l~~~---------------------~~~~~~i~~t~~~~----------------------- 167 (250)
T 1njg_A 142 ----------SFNALLKTLEEP---------------------PEHVKFLLATTDPQ----------------------- 167 (250)
T ss_dssp ----------HHHHHHHHHHSC---------------------CTTEEEEEEESCGG-----------------------
T ss_pred ----------HHHHHHHHHhcC---------------------CCceEEEEEeCChH-----------------------
Confidence 889999999820 12355666654210
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+.+|+ .++.+++++.+++.+++...+.. . .+.++
T Consensus 168 ---------------------------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~-----------~--~~~~~ 206 (250)
T 1njg_A 168 ---------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-----------E--HIAHE 206 (250)
T ss_dssp ---------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-----------T--TCCBC
T ss_pred ---------------------------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh-----------c--CCCCC
Confidence 1335566674 57999999999999988753211 1 45789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ +++.|.+.+++++++
T Consensus 207 ~~~~~~l~~~~---~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 207 PRALQLLARAA---EGSLRDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999974 567899999988764
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.53 E-value=2.8e-14 Score=147.41 Aligned_cols=185 Identities=23% Similarity=0.303 Sum_probs=128.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---- 354 (684)
++|++.+++.|...+... ...++||+||||||||++|+++++.+
T Consensus 19 ~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~ 66 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGEN 66 (319)
T ss_dssp SCSCHHHHHHHHTTTTTT--------------------------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHhCC--------------------------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc
Confidence 799999999887766310 01469999999999999999999986
Q ss_pred -CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHH
Q 005667 355 -NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 355 -~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
..+++.+++++..... .....+.......+ .....+.||+|||+|.+... .++.|++.|
T Consensus 67 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~l 126 (319)
T 2chq_A 67 WRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRTM 126 (319)
T ss_dssp HHHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTGGGT
T ss_pred ccCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHHHHH
Confidence 3357888887643211 11222333321211 11235689999999999876 889999998
Q ss_pred hCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhc
Q 005667 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 434 Eg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v 513 (684)
+. ...+++||++++...
T Consensus 127 e~---------------------~~~~~~~i~~~~~~~------------------------------------------ 143 (319)
T 2chq_A 127 EM---------------------YSKSCRFILSCNYVS------------------------------------------ 143 (319)
T ss_dssp SS---------------------SSSSEEEEEEESCGG------------------------------------------
T ss_pred Hh---------------------cCCCCeEEEEeCChh------------------------------------------
Confidence 82 112355666655210
Q ss_pred cchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChH
Q 005667 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 514 ~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR 593 (684)
.+.|.+.+|+. ++.|.+++.+++.+++...+ ... .+.+++++++.|+.. ++++.|
T Consensus 144 --------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~-----------~~~--~~~i~~~~l~~l~~~---~~G~~r 198 (319)
T 2chq_A 144 --------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEIC-----------EKE--GVKITEDGLEALIYI---SGGDFR 198 (319)
T ss_dssp --------GSCHHHHTTCE-EEECCCCCHHHHHHHHHHHH-----------HTT--CCCBCHHHHHHHHHT---TTTCHH
T ss_pred --------hcchHHHhhCe-EEEecCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHH---cCCCHH
Confidence 14577888886 89999999999988887522 112 456899999999974 477889
Q ss_pred HHHHHHHHHH
Q 005667 594 GLRSLLENIL 603 (684)
Q Consensus 594 ~Lr~iIe~~l 603 (684)
.+.+.++...
T Consensus 199 ~~~~~l~~~~ 208 (319)
T 2chq_A 199 KAINALQGAA 208 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=4.8e-14 Score=148.21 Aligned_cols=189 Identities=19% Similarity=0.225 Sum_probs=126.6
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~--- 355 (684)
++|++++++.|..++... ...++||+||||||||++|+++++.++
T Consensus 39 i~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~ 86 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKSA--------------------------------NLPHMLFYGPPGTGKTSTILALTKELYGPD 86 (353)
T ss_dssp CCSCCTTHHHHHHHTTCT--------------------------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHhcC--------------------------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 799999999888776310 014699999999999999999998864
Q ss_pred ---CCEEEEeccccccccccccchHHHHHHHHhhcch--------hhHhhcCCEEEEccccccchhccccccCCCCchHH
Q 005667 356 ---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDY--------NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 356 ---~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~--------~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~ 424 (684)
..++.+++++....+.+ ...+......... ........||+|||+|.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------- 148 (353)
T 1sxj_D 87 LMKSRILELNASDERGISIV----REKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------- 148 (353)
T ss_dssp HHTTSEEEECSSSCCCHHHH----TTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH--------------
T ss_pred ccccceEEEccccccchHHH----HHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH--------------
Confidence 45788888764311111 1111111111000 000124569999999999877
Q ss_pred HHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005667 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~ 504 (684)
.++.|++.|+.. ..+..||++++...
T Consensus 149 ~~~~Ll~~le~~---------------------~~~~~~il~~~~~~--------------------------------- 174 (353)
T 1sxj_D 149 AQSALRRTMETY---------------------SGVTRFCLICNYVT--------------------------------- 174 (353)
T ss_dssp HHHHHHHHHHHT---------------------TTTEEEEEEESCGG---------------------------------
T ss_pred HHHHHHHHHHhc---------------------CCCceEEEEeCchh---------------------------------
Confidence 899999999821 11234445444210
Q ss_pred hHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHh
Q 005667 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ 584 (684)
.+.|.+.+|+. .+.|.+++.+++.+++...+ ... .+.++++++++|++.
T Consensus 175 -----------------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~-----------~~~--~~~i~~~~l~~l~~~ 223 (353)
T 1sxj_D 175 -----------------RIIDPLASQCS-KFRFKALDASNAIDRLRFIS-----------EQE--NVKCDDGVLERILDI 223 (353)
T ss_dssp -----------------GSCHHHHHHSE-EEECCCCCHHHHHHHHHHHH-----------HTT--TCCCCHHHHHHHHHH
T ss_pred -----------------hCcchhhccCc-eEEeCCCCHHHHHHHHHHHH-----------HHh--CCCCCHHHHHHHHHH
Confidence 14477788886 78999999999998887521 112 457899999999996
Q ss_pred cCCCCCChHHHHHHHHHHHHH
Q 005667 585 AISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 585 ay~~~~GAR~Lr~iIe~~l~~ 605 (684)
+ .++.|.+.+.++.....
T Consensus 224 ~---~G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 224 S---AGDLRRGITLLQSASKG 241 (353)
T ss_dssp T---SSCHHHHHHHHHHTHHH
T ss_pred c---CCCHHHHHHHHHHHHHh
Confidence 4 36689999988876654
No 61
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.49 E-value=3.1e-13 Score=133.29 Aligned_cols=169 Identities=18% Similarity=0.258 Sum_probs=114.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
.+++|+||||||||++|+++++.+. .+++.+++.++... + ... +.. ...+.+|+|||++.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-----~~~----~~~------~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-----TAL----LEG------LEQFDLICIDDVDAV 116 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-----GGG----GTT------GGGSSEEEEETGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-----HHH----HHh------ccCCCEEEEeccccc
Confidence 7999999999999999999998873 67888888776521 1 011 110 135689999999998
Q ss_pred chhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
.... ..++.|+.+++... ....+.+|++++...
T Consensus 117 ~~~~------------~~~~~l~~~l~~~~-------------------~~~~~~ii~~~~~~~---------------- 149 (242)
T 3bos_A 117 AGHP------------LWEEAIFDLYNRVA-------------------EQKRGSLIVSASASP---------------- 149 (242)
T ss_dssp TTCH------------HHHHHHHHHHHHHH-------------------HHCSCEEEEEESSCT----------------
T ss_pred cCCH------------HHHHHHHHHHHHHH-------------------HcCCCeEEEEcCCCH----------------
Confidence 7651 13777888776210 111122444443210
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHh
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~ 565 (684)
. .. ..+.+.+.+|+. .++.|.+++.+++.+++...+.
T Consensus 150 -----~------------------~~-------~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~----------- 188 (242)
T 3bos_A 150 -----M------------------EA-------GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA----------- 188 (242)
T ss_dssp -----T------------------TT-------TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH-----------
T ss_pred -----H------------------HH-------HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH-----------
Confidence 0 00 012366778885 7899999999999998876322
Q ss_pred hCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 005667 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.. .+.++++++++|++. ++++.|.+.+++++++..+..
T Consensus 189 ~~--~~~~~~~~~~~l~~~---~~g~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 189 MR--GLQLPEDVGRFLLNR---MARDLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp HT--TCCCCHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHH
T ss_pred Hc--CCCCCHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHH
Confidence 12 457899999999986 367899999999998877643
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.4e-13 Score=144.51 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=139.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---- 354 (684)
+.|.++-.+.|..++...... ..+.+++|+||||||||++++.+++.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~----------------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS----------------------------SQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----------------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 678888888888777532220 023799999999999999999999988
Q ss_pred ------CCCEEEEeccccccc---------ccccc-----chHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 355 ------NVPFVIADATTLTQA---------GYVGE-----DVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 355 ------~~pfv~v~~s~l~~~---------gyvG~-----~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
...++.+||..+... .+.|. .....+...|..... ......||+|||||.+. .
T Consensus 74 ~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~---- 146 (318)
T 3te6_A 74 ARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S---- 146 (318)
T ss_dssp TTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C----
T ss_pred hhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c----
Confidence 245889998765421 11111 113445555554210 12346799999999997 2
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccH-HHHHHhccccCCCCcCccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dL-e~~i~~r~~~~~IGf~~~~~~ 493 (684)
+.++..|+++.+ .+.+++++|+.+|..++ +..
T Consensus 147 --------q~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~~~~------------------ 179 (318)
T 3te6_A 147 --------EKILQYFEKWIS---------------------SKNSKLSIICVGGHNVTIREQ------------------ 179 (318)
T ss_dssp --------THHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCCHHH------------------
T ss_pred --------chHHHHHHhccc---------------------ccCCcEEEEEEecCcccchhh------------------
Confidence 115555555443 12345777877764321 111
Q ss_pred ccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc-eEEEcCCCCHHHHHHHHhchHHHHHHHH------------
Q 005667 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQY------------ 560 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~eel~~Il~~~l~~L~kqy------------ 560 (684)
+.+.+.+|+. .++.|+||+.+|+.+|++..+..+.+.+
T Consensus 180 -----------------------------L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~ 230 (318)
T 3te6_A 180 -----------------------------INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTI 230 (318)
T ss_dssp -----------------------------HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEE
T ss_pred -----------------------------cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccc
Confidence 2255667886 5799999999999999998554431100
Q ss_pred ----H----HHH--hhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhc
Q 005667 561 ----R----KMF--QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 561 ----~----~~l--~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
+ ... ......+.++++|++.++++.....+.+|-.-.++++++..+-.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 231 YNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp CCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 0 000 000123468999999999976556778998888888887766443
No 63
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.49 E-value=2.1e-12 Score=137.10 Aligned_cols=208 Identities=25% Similarity=0.355 Sum_probs=131.6
Q ss_pred hcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
|++ ++||+.+++.+...+.....+ . .++.+++|+||||||||++|+++|+.+
T Consensus 24 l~~-~~g~~~~~~~l~~~i~~~~~~-------~--------------------~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 24 LDE-FIGQENVKKKLSLALEAAKMR-------G--------------------EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGG-CCSCHHHHHHHHHHHHHHHHH-------T--------------------CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHH-ccCcHHHHHHHHHHHHHHHhc-------C--------------------CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 444 589999999988777522111 0 013689999999999999999999999
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.++...++..+.. + ..+..++... ....|+||||++.+.+. +++.|+..|+
T Consensus 76 ~~~~~~~sg~~~~~----~----~~l~~~~~~~------~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~ 127 (334)
T 1in4_A 76 QTNIHVTSGPVLVK----Q----GDMAAILTSL------ERGDVLFIDEIHRLNKA--------------VEELLYSAIE 127 (334)
T ss_dssp TCCEEEEETTTCCS----H----HHHHHHHHHC------CTTCEEEEETGGGCCHH--------------HHHHHHHHHH
T ss_pred CCCEEEEechHhcC----H----HHHHHHHHHc------cCCCEEEEcchhhcCHH--------------HHHHHHHHHH
Confidence 98877666543321 1 1122222211 24579999999999765 7888888887
Q ss_pred CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhcc
Q 005667 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (684)
.....+.- + .....+.+......+.++.+.+..
T Consensus 128 ~~~~~i~~-~--~~~~~~~i~~~l~~~~li~at~~~-------------------------------------------- 160 (334)
T 1in4_A 128 DFQIDIMI-G--KGPSAKSIRIDIQPFTLVGATTRS-------------------------------------------- 160 (334)
T ss_dssp TSCCCC------------------CCCEEEEEESCG--------------------------------------------
T ss_pred hcccceee-c--cCcccccccccCCCeEEEEecCCc--------------------------------------------
Confidence 32211000 0 000001111122233333322210
Q ss_pred chHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHH
Q 005667 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 515 ~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~ 594 (684)
..+.+.+++|+...+.|++++.+++.+|+++.... . .+.+++++++.|++.+ .+.+|.
T Consensus 161 ------~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-----------~--~~~~~~~~~~~ia~~~---~G~~R~ 218 (334)
T 1in4_A 161 ------GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-----------M--DVEIEDAAAEMIAKRS---RGTPRI 218 (334)
T ss_dssp ------GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-----------T--TCCBCHHHHHHHHHTS---TTCHHH
T ss_pred ------ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-----------c--CCCcCHHHHHHHHHhc---CCChHH
Confidence 12568889999988999999999999999863221 1 4678999999999963 566899
Q ss_pred HHHHHHHHHHHHH
Q 005667 595 LRSLLENILMDAM 607 (684)
Q Consensus 595 Lr~iIe~~l~~al 607 (684)
+.++++++...+.
T Consensus 219 a~~ll~~~~~~a~ 231 (334)
T 1in4_A 219 AIRLTKRVRDMLT 231 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999987765543
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.49 E-value=5.6e-13 Score=141.14 Aligned_cols=185 Identities=26% Similarity=0.307 Sum_probs=124.2
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~p- 357 (684)
++|++++++.|..++... ..++.+||+||+|||||++|+++++.++..
T Consensus 18 ~vg~~~~~~~L~~~l~~~-------------------------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~ 66 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLG-------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCET 66 (373)
T ss_dssp SCSCHHHHHHHHHHHHHT-------------------------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTT
T ss_pred ccCcHHHHHHHHHHHHhC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 799999999998887410 012578999999999999999999988532
Q ss_pred -----------------------EEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccc
Q 005667 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~ 414 (684)
++.++... ..+.+ .++.++...........+.||+|||+|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~---- 134 (373)
T 1jr3_A 67 GITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTKVE---DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH---- 134 (373)
T ss_dssp CSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCCSS---CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH----
T ss_pred CCCCCCCcccHHHHHHhccCCCceEEecccc-----cCCHH---HHHHHHHHHhhccccCCeEEEEEECcchhcHH----
Confidence 22222211 11111 12333332211111234679999999999876
Q ss_pred ccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccc
Q 005667 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~ 494 (684)
.++.|++.++. ...+++||++++...
T Consensus 135 ----------~~~~Ll~~le~---------------------~~~~~~~Il~~~~~~----------------------- 160 (373)
T 1jr3_A 135 ----------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ----------------------- 160 (373)
T ss_dssp ----------HHHHHHHHHHS---------------------CCSSEEEEEEESCGG-----------------------
T ss_pred ----------HHHHHHHHHhc---------------------CCCceEEEEEeCChH-----------------------
Confidence 89999999982 112356666554110
Q ss_pred cccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC
Q 005667 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~ 574 (684)
.+.+.+.+|. .++.|.+++.+++.+++...+.. . .+.++
T Consensus 161 ---------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~-----------~--~~~~~ 199 (373)
T 1jr3_A 161 ---------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-----------E--HIAHE 199 (373)
T ss_dssp ---------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-----------H--TCCBC
T ss_pred ---------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH-----------c--CCCCC
Confidence 1345666776 58999999999999988763221 1 45789
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ +++.|.+.+++++++.
T Consensus 200 ~~a~~~l~~~~---~G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 200 PRALQLLARAA---EGSLRDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHS---SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHH
Confidence 99999999964 6678999999988753
No 65
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.49 E-value=1.9e-13 Score=156.51 Aligned_cols=143 Identities=18% Similarity=0.278 Sum_probs=89.7
Q ss_pred hhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCcc---CCCCCeEEeecCceEEEe
Q 005667 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARK---HPRGDNIQIDTKDILFIC 465 (684)
Q Consensus 389 ~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~---~~~~~~i~IdtsniIfI~ 465 (684)
+.+..+.+++|||||++.+.+. +|+.|+++|+...+.+....... ...... ...++.+|+
T Consensus 195 g~~~~a~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~---~p~~~~vI~ 257 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEP---VPCDFVLVA 257 (604)
T ss_dssp CHHHHTTTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSC---EECCCEEEE
T ss_pred ceeeecCCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCc---cceeEEEEE
Confidence 4456778899999999999877 99999999995555442111000 000111 123467788
Q ss_pred cCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc---eEEEcCCC--
Q 005667 466 GGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP---VLVSLLAL-- 540 (684)
Q Consensus 466 tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d---~iI~f~pL-- 540 (684)
++|.. +. ..+.|+|++||+ ..+.|++.
T Consensus 258 atn~~--------------------------------------~~----------~~l~~~l~~R~~v~~i~i~l~~~~~ 289 (604)
T 3k1j_A 258 AGNLD--------------------------------------TV----------DKMHPALRSRIRGYGYEVYMRTTMP 289 (604)
T ss_dssp EECHH--------------------------------------HH----------HHSCHHHHHHHHHHSEEEECCSEEE
T ss_pred ecCHH--------------------------------------HH----------hhcCHHHHHHhhccceEeecccccc
Confidence 87731 00 126799999997 56777654
Q ss_pred -CHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCC-------ChHHHHHHHHHHHH
Q 005667 541 -TENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-------GARGLRSLLENILM 604 (684)
Q Consensus 541 -s~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~-------GAR~Lr~iIe~~l~ 604 (684)
..+.+..++.. +.++ ....+....+++++++.|+++++.+.+ +.|+|.++++....
T Consensus 290 ~~~~~~~~~l~~----~~~~----~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~ 353 (604)
T 3k1j_A 290 DTIENRRKLVQF----VAQE----VKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGD 353 (604)
T ss_dssp CCHHHHHHHHHH----HHHH----HHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HHHH----HhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHH
Confidence 33445554432 2222 222233568999999999997653333 58999999987543
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=3.7e-13 Score=143.04 Aligned_cols=204 Identities=20% Similarity=0.207 Sum_probs=133.7
Q ss_pred ccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005667 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l-- 354 (684)
+.++|+++.++.+...+..... . ..+.+++|+||||||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~------------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----N------------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----T------------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5589999999999988752111 0 012689999999999999999999987
Q ss_pred ---------CCCEEEEeccccc-cc----------------cccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccc
Q 005667 355 ---------NVPFVIADATTLT-QA----------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 355 ---------~~pfv~v~~s~l~-~~----------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~ 408 (684)
+.+++.++|.... .. ...|......+..+.... ...+.||+|||+|.+.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~vlilDEi~~l~ 146 (384)
T 2qby_B 72 VKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-----RNIRAIIYLDEVDTLV 146 (384)
T ss_dssp HHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-----SSSCEEEEEETTHHHH
T ss_pred HhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-----ccCCCEEEEECHHHhc
Confidence 8899999987543 10 111222122233322211 1122399999999997
Q ss_pred hhccccccCCCCchHHHHHH-HHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 409 KKAESLNISRDVSGEGVQQA-LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~-LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
... .++. +..+++- . .++.+|++++..++
T Consensus 147 ~~~-------------~~~~~l~~l~~~--------------------~--~~~~iI~~t~~~~~--------------- 176 (384)
T 2qby_B 147 KRR-------------GGDIVLYQLLRS--------------------D--ANISVIMISNDINV--------------- 176 (384)
T ss_dssp HST-------------TSHHHHHHHHTS--------------------S--SCEEEEEECSSTTT---------------
T ss_pred cCC-------------CCceeHHHHhcC--------------------C--cceEEEEEECCCch---------------
Confidence 641 1233 3344430 0 45777777763210
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhC
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~ 567 (684)
. ..+.+.+.+|+...+.|++|+.+++.+|+...+.. .
T Consensus 177 ----------------------~----------~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~-----------~ 213 (384)
T 2qby_B 177 ----------------------R----------DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY-----------G 213 (384)
T ss_dssp ----------------------T----------TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH-----------T
T ss_pred ----------------------H----------hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh-----------h
Confidence 0 02457777898779999999999999999864321 0
Q ss_pred CcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 005667 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 568 gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~a 606 (684)
-....+++++++.+++.+....+++|.+.++++.+...+
T Consensus 214 ~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 214 LIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp SCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred cccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 013468999999999976445577999988888776543
No 67
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.48 E-value=1.6e-13 Score=145.03 Aligned_cols=214 Identities=19% Similarity=0.163 Sum_probs=134.9
Q ss_pred ccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005667 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l-- 354 (684)
+.++|++..++.+...+..... ...+.+++|+||||||||++|+++++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~----------------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR----------------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS----------------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc----------------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3479999999998877631100 0113799999999999999999999888
Q ss_pred -------CCCEEEEeccccccc---------------cccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcc
Q 005667 355 -------NVPFVIADATTLTQA---------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 355 -------~~pfv~v~~s~l~~~---------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~ 412 (684)
+.+++.++|...... ...|......+..++.... ....+.||||||+|.+...+
T Consensus 71 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~- 146 (387)
T 2v1u_A 71 RASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRP- 146 (387)
T ss_dssp HHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHST-
T ss_pred HHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccC-
Confidence 778999998764311 0112222222333222111 01235699999999997641
Q ss_pred ccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccc
Q 005667 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~ 492 (684)
....++..|++.++... . ..++.+|++++..++
T Consensus 147 --------~~~~~l~~l~~~~~~~~------------------~-~~~~~~I~~t~~~~~-------------------- 179 (387)
T 2v1u_A 147 --------GGQDLLYRITRINQELG------------------D-RVWVSLVGITNSLGF-------------------- 179 (387)
T ss_dssp --------THHHHHHHHHHGGGCC------------------------CEEEEECSCSTT--------------------
T ss_pred --------CCChHHHhHhhchhhcC------------------C-CceEEEEEEECCCch--------------------
Confidence 01113444444443100 0 234667777663210
Q ss_pred cccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccce-EEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcce
Q 005667 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l 571 (684)
. ..+.+.+.+|+.. .+.|++++.+++.+|+...+... + ...
T Consensus 180 -----------------~----------~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~-------~----~~~ 221 (387)
T 2v1u_A 180 -----------------V----------ENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA-------F----NPG 221 (387)
T ss_dssp -----------------S----------SSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH-------B----CTT
T ss_pred -----------------H----------hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh-------c----cCC
Confidence 0 0245677788875 89999999999999998643210 0 135
Q ss_pred ecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005667 572 HFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 572 ~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al 607 (684)
.+++++++.+++.+....+++|.+.++++.+...+.
T Consensus 222 ~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 222 VLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 688999999999765556789999999998876554
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=2.9e-13 Score=140.08 Aligned_cols=186 Identities=18% Similarity=0.237 Sum_probs=127.1
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l---- 354 (684)
++|++.+++.|...+... ...++||+||||+|||++|+++++.+
T Consensus 23 ~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~ 70 (323)
T 1sxj_B 23 IVGNKETIDRLQQIAKDG--------------------------------NMPHMIISGMPGIGKTTSVHCLAHELLGRS 70 (323)
T ss_dssp CCSCTHHHHHHHHHHHSC--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred HHCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 689999999998887410 01359999999999999999999886
Q ss_pred -CCCEEEEecccccccccccc-chHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005667 355 -NVPFVIADATTLTQAGYVGE-DVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 355 -~~pfv~v~~s~l~~~gyvG~-~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
..+++.+++++.. +. .....+..+..... ......+.||+|||+|.+... .++.|++.
T Consensus 71 ~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~-~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~ 130 (323)
T 1sxj_B 71 YADGVLELNASDDR-----GIDVVRNQIKHFAQKKL-HLPPGKHKIVILDEADSMTAG--------------AQQALRRT 130 (323)
T ss_dssp HHHHEEEECTTSCC-----SHHHHHTHHHHHHHBCC-CCCTTCCEEEEEESGGGSCHH--------------HHHTTHHH
T ss_pred ccCCEEEecCcccc-----ChHHHHHHHHHHHhccc-cCCCCCceEEEEECcccCCHH--------------HHHHHHHH
Confidence 3457777776532 11 11122222221100 011224679999999999876 88999999
Q ss_pred HhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhh
Q 005667 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (684)
++. ...++.||++++...
T Consensus 131 le~---------------------~~~~~~~il~~~~~~----------------------------------------- 148 (323)
T 1sxj_B 131 MEL---------------------YSNSTRFAFACNQSN----------------------------------------- 148 (323)
T ss_dssp HHH---------------------TTTTEEEEEEESCGG-----------------------------------------
T ss_pred Hhc---------------------cCCCceEEEEeCChh-----------------------------------------
Confidence 982 012355555554210
Q ss_pred ccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCCh
Q 005667 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GA 592 (684)
.+.|.+.+|+. ++.|.+++.+++.+++...+.. . .+.+++++++.|++.+ +++.
T Consensus 149 ---------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~~~~~~~l~~~~---~G~~ 202 (323)
T 1sxj_B 149 ---------KIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKL-----------E--DVKYTNDGLEAIIFTA---EGDM 202 (323)
T ss_dssp ---------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-----------H--TCCBCHHHHHHHHHHH---TTCH
T ss_pred ---------hchhHHHhhce-EEeecCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---CCCH
Confidence 14467777876 8999999999999988763221 1 4568999999999975 6678
Q ss_pred HHHHHHHHHHHH
Q 005667 593 RGLRSLLENILM 604 (684)
Q Consensus 593 R~Lr~iIe~~l~ 604 (684)
|.+.+.++....
T Consensus 203 r~a~~~l~~~~~ 214 (323)
T 1sxj_B 203 RQAINNLQSTVA 214 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 988888887653
No 69
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.48 E-value=3.5e-13 Score=148.80 Aligned_cols=174 Identities=17% Similarity=0.261 Sum_probs=116.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccccccccchHHHHHHHHhhcchhhH--hh-cCCEEEEc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA--AA-QQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-----~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~--~a-~~gVLfID 402 (684)
.+++|+||||||||+||+++++.+ +.+++.+++..+.. .+ ...+.......+. .. .+.|||||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~vL~ID 201 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DL--------VDSMKEGKLNEFREKYRKKVDILLID 201 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HH--------HHHHHTTCHHHHHHHHTTTCSEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HH--------HHHHHcccHHHHHHHhcCCCCEEEEe
Confidence 689999999999999999999988 77899999876531 11 1111100000000 12 56899999
Q ss_pred cccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcccc
Q 005667 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 403 EIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|++.+...+ ..++.|+..|+... . .+..+|++++...
T Consensus 202 Ei~~l~~~~------------~~q~~l~~~l~~l~-------------------~-~~~~iIitt~~~~----------- 238 (440)
T 2z4s_A 202 DVQFLIGKT------------GVQTELFHTFNELH-------------------D-SGKQIVICSDREP----------- 238 (440)
T ss_dssp CGGGGSSCH------------HHHHHHHHHHHHHH-------------------T-TTCEEEEEESSCG-----------
T ss_pred CcccccCCh------------HHHHHHHHHHHHHH-------------------H-CCCeEEEEECCCH-----------
Confidence 999997631 16778888876210 0 1122333333110
Q ss_pred CCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccc--eEEEcCCCCHHHHHHHHhchHHHHHHHH
Q 005667 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 483 ~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d--~iI~f~pLs~eel~~Il~~~l~~L~kqy 560 (684)
..+ ..+.+.|++|+. .++.+.+++.+++.+|+...+..
T Consensus 239 ----------------------------~~l-------~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~----- 278 (440)
T 2z4s_A 239 ----------------------------QKL-------SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI----- 278 (440)
T ss_dssp ----------------------------GGC-------SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH-----
T ss_pred ----------------------------HHH-------HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH-----
Confidence 000 024577888885 68999999999999998864321
Q ss_pred HHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005667 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 561 ~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al 607 (684)
. .+.++++++++|+... ++++|.|.+++++++..+.
T Consensus 279 ------~--~~~i~~e~l~~la~~~---~gn~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 279 ------E--HGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp ------H--TCCCCTTHHHHHHHHC---CSCHHHHHHHHHHHHHHHH
T ss_pred ------c--CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 1 4678999999999863 6789999999999887664
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=1.2e-12 Score=138.87 Aligned_cols=211 Identities=16% Similarity=0.177 Sum_probs=136.1
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccc--eEEEEccCCCcHHHHHHHHHHHh-
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS--NILLMGPTGSGKTLLAKTLARYV- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~vLL~GPpGTGKT~LAraIA~~l- 354 (684)
.++|++..++.|..++..... .. .+. +++|+||||||||++++++++.+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~----~~------------------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLR----NP------------------------GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHH----ST------------------------TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHc----CC------------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 479999999999988852211 00 013 89999999999999999999988
Q ss_pred ---CCCEEEEeccccccc-c--------------ccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccccc
Q 005667 355 ---NVPFVIADATTLTQA-G--------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 355 ---~~pfv~v~~s~l~~~-g--------------yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~ 416 (684)
+.+++.++|...... . ..+......+..+.... .....+.||+|||+|.+...
T Consensus 70 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l~~~------ 140 (389)
T 1fnn_A 70 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RERDLYMFLVLDDAFNLAPD------ 140 (389)
T ss_dssp TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGSCHH------
T ss_pred hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hhcCCeEEEEEECccccchH------
Confidence 567889998654310 0 01111111111111110 01123569999999999554
Q ss_pred CCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccc
Q 005667 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~ 496 (684)
.+..|+++++...- ....++.+|++++..++
T Consensus 141 --------~~~~L~~~~~~~~~-----------------~~~~~~~iI~~~~~~~~------------------------ 171 (389)
T 1fnn_A 141 --------ILSTFIRLGQEADK-----------------LGAFRIALVIVGHNDAV------------------------ 171 (389)
T ss_dssp --------HHHHHHHHTTCHHH-----------------HSSCCEEEEEEESSTHH------------------------
T ss_pred --------HHHHHHHHHHhCCC-----------------CCcCCEEEEEEECCchH------------------------
Confidence 89999999872100 00134666666552211
Q ss_pred cCCCchhhhHhHHhhhccchHHHHcCCCcccccccce-EEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH
Q 005667 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~-iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e 575 (684)
.+ .+.+.+.+|+.. .+.|++++.+++.+++...+... .....+++
T Consensus 172 -------------~~----------~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~-----------~~~~~~~~ 217 (389)
T 1fnn_A 172 -------------LN----------NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG-----------LAEGSYSE 217 (389)
T ss_dssp -------------HH----------TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH-----------BCTTSSCH
T ss_pred -------------HH----------HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh-----------cCCCCCCH
Confidence 00 134566677764 79999999999999987643211 11236899
Q ss_pred HHHHHHHHhcCCC------CCChHHHHHHHHHHHHHHHh
Q 005667 576 NALRLIAKKAISK------NTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 576 eAl~~La~~ay~~------~~GAR~Lr~iIe~~l~~al~ 608 (684)
++++.+++.+... ++++|.+.++++.++..+..
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999976544 67799999999987765543
No 71
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.3e-12 Score=146.71 Aligned_cols=210 Identities=18% Similarity=0.213 Sum_probs=127.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++|++.+++.|..++...........++ .+..+ ..+..++||+||||||||++|+++|+.++.++
T Consensus 41 liG~~~~~~~L~~~l~~~~~~~~~~~~~---~g~~~------------~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 41 VCGNKGSVMKLKNWLANWENSKKNSFKH---AGKDG------------SGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CCSCHHHHHHHHHHHHTHHHHHHTTTCC---CCTTS------------TTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred hcCCHHHHHHHHHHHHHhHhhchhhccc---cCccC------------CCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 7999999999999886322211000000 00000 01237999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHH-----HHHHHhhcc-hhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005667 359 VIADATTLTQAGYVGEDVESI-----LYKLLTVSD-YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~-----l~~l~~~a~-~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
+.++++++............. +..++.... .......++||||||||.+..... +..+.|+++
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----------~~l~~L~~~ 174 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----------GGVGQLAQF 174 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----------THHHHHHHH
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----------HHHHHHHHH
Confidence 999998765211000000000 001111100 000124578999999999976511 156788888
Q ss_pred HhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhh
Q 005667 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (684)
++... ..+++|++....
T Consensus 175 l~~~~---------------------~~iIli~~~~~~------------------------------------------ 191 (516)
T 1sxj_A 175 CRKTS---------------------TPLILICNERNL------------------------------------------ 191 (516)
T ss_dssp HHHCS---------------------SCEEEEESCTTS------------------------------------------
T ss_pred HHhcC---------------------CCEEEEEcCCCC------------------------------------------
Confidence 87210 114444432100
Q ss_pred ccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCCh
Q 005667 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GA 592 (684)
...+.|. |+...+.|.+++.+++.+++...+.. . .+.+++++++.|++.+ +++.
T Consensus 192 ---------~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i~~~-----------~--~~~i~~~~l~~la~~s---~Gdi 245 (516)
T 1sxj_A 192 ---------PKMRPFD-RVCLDIQFRRPDANSIKSRLMTIAIR-----------E--KFKLDPNVIDRLIQTT---RGDI 245 (516)
T ss_dssp ---------STTGGGT-TTSEEEECCCCCHHHHHHHHHHHHHH-----------H--TCCCCTTHHHHHHHHT---TTCH
T ss_pred ---------ccchhhH-hceEEEEeCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---CCcH
Confidence 0113343 44558999999999999888653211 1 4568999999999864 5668
Q ss_pred HHHHHHHHHHH
Q 005667 593 RGLRSLLENIL 603 (684)
Q Consensus 593 R~Lr~iIe~~l 603 (684)
|.+.++++.+.
T Consensus 246 R~~i~~L~~~~ 256 (516)
T 1sxj_A 246 RQVINLLSTIS 256 (516)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888654
No 72
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.47 E-value=1.1e-14 Score=136.12 Aligned_cols=95 Identities=18% Similarity=0.319 Sum_probs=73.0
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++|++.+++.+.+.+..... ...++||+||||||||++|+++++... +|
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~------------------------------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~ 54 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAK------------------------------RTSPVFLTGEAGSPFETVARYFHKNGT-PW 54 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHT------------------------------CSSCEEEEEETTCCHHHHHGGGCCTTS-CE
T ss_pred ceeCCHHHHHHHHHHHHHhC------------------------------CCCcEEEECCCCccHHHHHHHHHHhCC-Ce
Confidence 68999999998888751100 126899999999999999999998887 99
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.++|+.+... + ...++. .+.+++|||||||.+..+ .|..|+++|+
T Consensus 55 ~~~~~~~~~~~-~--------~~~~~~-------~a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~ 100 (143)
T 3co5_A 55 VSPARVEYLID-M--------PMELLQ-------KAEGGVLYVGDIAQYSRN--------------IQTGITFIIG 100 (143)
T ss_dssp ECCSSTTHHHH-C--------HHHHHH-------HTTTSEEEEEECTTCCHH--------------HHHHHHHHHH
T ss_pred EEechhhCChH-h--------hhhHHH-------hCCCCeEEEeChHHCCHH--------------HHHHHHHHHH
Confidence 99999876521 1 222333 345689999999999887 9999999998
No 73
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.42 E-value=7.4e-13 Score=156.52 Aligned_cols=217 Identities=21% Similarity=0.285 Sum_probs=143.5
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
|+|++.+++.|.+.+..++....... .. . ..++.++||+||||||||++|++||+.++.++
T Consensus 206 i~G~~~~~~~l~e~i~~~l~~~~~~~----~l---~------------i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~ 266 (806)
T 1ypw_A 206 VGGCRKQLAQIKEMVELPLRHPALFK----AI---G------------VKPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp CCSCSGGGGHHHHHHHHHHHCGGGGT----SS---C------------CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE
T ss_pred hCChHHHHHHHHHHHHHHhhCHHHHH----hc---C------------CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE
Confidence 79999999999999875443211000 00 0 11247999999999999999999999999999
Q ss_pred EEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCcee
Q 005667 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++.++. ..+.|+. +..+..+|..+. ...++++||||||.+...++. ......+++++.|+.+|+|...
T Consensus 267 i~v~~~~l~-~~~~g~~-~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~ 337 (806)
T 1ypw_A 267 FLINGPEIM-SKLAGES-ESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp EEEEHHHHS-SSSTTHH-HHHHHHHHHHHH----HHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSCT
T ss_pred EEEEchHhh-hhhhhhH-HHHHHHHHHHHH----hcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhcc
Confidence 999999887 4566765 566777776643 346789999999999886432 1222345688999999985221
Q ss_pred eecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHH
Q 005667 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl 518 (684)
..++++|+++|..+
T Consensus 338 -------------------~~~v~vI~atn~~~----------------------------------------------- 351 (806)
T 1ypw_A 338 -------------------RAHVIVMAATNRPN----------------------------------------------- 351 (806)
T ss_dssp -------------------TSCCEEEEECSCTT-----------------------------------------------
T ss_pred -------------------cccEEEecccCCch-----------------------------------------------
Confidence 13466777766321
Q ss_pred HHcCCCccccc--ccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHH
Q 005667 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 ~~~~f~PeLl~--R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr 596 (684)
.+.|.+.. ||+..+.+..++.++..+|+...+..+ .+ ..+..+..++.. ..++-.+.+.
T Consensus 352 ---~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~-------------~l-~~~~~l~~la~~--t~g~~g~dl~ 412 (806)
T 1ypw_A 352 ---SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM-------------KL-ADDVDLEQVANE--THGHVGADLA 412 (806)
T ss_dssp ---TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS-------------CC-CTTCCTHHHHHS--CSSCCHHHHH
T ss_pred ---hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC-------------CC-cccchhHHHHHh--hcCcchHHHH
Confidence 12344444 899999999999999999887532111 11 122224455553 3444456677
Q ss_pred HHHHHHHHHHHh
Q 005667 597 SLLENILMDAMY 608 (684)
Q Consensus 597 ~iIe~~l~~al~ 608 (684)
.++......++.
T Consensus 413 ~l~~ea~~~a~r 424 (806)
T 1ypw_A 413 ALCSEAALQAIR 424 (806)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666655555443
No 74
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.42 E-value=3.4e-13 Score=127.34 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=103.4
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.++|++++++.+...+.. ..+.+++|+||||||||++|+++++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 70 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR--------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIING 70 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHhc--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 369999999988877631 012689999999999999999999886
Q ss_pred -------CCCEEEEecccccc-ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHH
Q 005667 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~v~~s~l~~-~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq 426 (684)
+.+++.+++..+.. ..+.|.. ...+..++.... ....+.||+|||+|.+...+.. ....+ ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~-~~~~~-----~~ 140 (195)
T 1jbk_A 71 EVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA-DGAMD-----AG 140 (195)
T ss_dssp CSCGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHH---HSTTTEEEEEETGGGGTT-------CCC-----CH
T ss_pred CCchhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCcc-cchHH-----HH
Confidence 67788888876642 2233332 334444443211 1234569999999999765221 11111 67
Q ss_pred HHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhH
Q 005667 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~ 506 (684)
+.|+.+++. .++.+|++++..++...
T Consensus 141 ~~l~~~~~~-----------------------~~~~~i~~~~~~~~~~~------------------------------- 166 (195)
T 1jbk_A 141 NMLKPALAR-----------------------GELHCVGATTLDEYRQY------------------------------- 166 (195)
T ss_dssp HHHHHHHHT-----------------------TSCCEEEEECHHHHHHH-------------------------------
T ss_pred HHHHHhhcc-----------------------CCeEEEEeCCHHHHHHH-------------------------------
Confidence 777777761 13455666552211000
Q ss_pred hHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHH
Q 005667 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVL 549 (684)
Q Consensus 507 ~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il 549 (684)
..+.+.|++|++ .+.+.+++.+++.+|+
T Consensus 167 --------------~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 --------------IEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --------------TTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred --------------HhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 014588889998 6899999999988776
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=2e-12 Score=136.53 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=51.2
Q ss_pred CCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecC-HHHHHHHHHhcCCCCCChHHHHHHHHH
Q 005667 523 LIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARGLRSLLEN 601 (684)
Q Consensus 523 f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~-eeAl~~La~~ay~~~~GAR~Lr~iIe~ 601 (684)
+.|.+.+|+ .++.|.+++.+++.+++...+.. . .+.++ +++++.|++.+ +++.|.+.+.++.
T Consensus 177 l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~~~~~l~~i~~~~---~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 177 IIAPIKSQC-LLIRCPAPSDSEISTILSDVVTN-----------E--RIQLETKDILKRIAQAS---NGNLRVSLLMLES 239 (354)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-----------H--TCEECCSHHHHHHHHHH---TTCHHHHHHHHTH
T ss_pred HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHH-----------c--CCCCCcHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 446778888 68999999999999988763221 1 56788 99999999875 6778999999987
Q ss_pred HHH
Q 005667 602 ILM 604 (684)
Q Consensus 602 ~l~ 604 (684)
+..
T Consensus 240 ~~~ 242 (354)
T 1sxj_E 240 MAL 242 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=1.8e-12 Score=137.30 Aligned_cols=183 Identities=21% Similarity=0.302 Sum_probs=120.8
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~-- 356 (684)
++||+.+++.|...+... ...+++|+||||||||++|+++|+.+..
T Consensus 27 ~~g~~~~~~~L~~~i~~g--------------------------------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEG--------------------------------KLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 689999999998887510 0135999999999999999999998743
Q ss_pred ---CEEEEeccccccccccccc-hHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHH
Q 005667 357 ---PFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ---pfv~v~~s~l~~~gyvG~~-~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
.+..+++++.. |.+ ....+..+...... ......|++|||+|.+... .+++|++.
T Consensus 75 ~~~~~~~~~~~~~~-----~~~~ir~~i~~~~~~~~~--~~~~~~viiiDe~~~l~~~--------------~~~~L~~~ 133 (340)
T 1sxj_C 75 YSNMVLELNASDDR-----GIDVVRNQIKDFASTRQI--FSKGFKLIILDEADAMTNA--------------AQNALRRV 133 (340)
T ss_dssp HHHHEEEECTTSCC-----SHHHHHTHHHHHHHBCCS--SSCSCEEEEETTGGGSCHH--------------HHHHHHHH
T ss_pred ccceEEEEcCcccc-----cHHHHHHHHHHHHhhccc--CCCCceEEEEeCCCCCCHH--------------HHHHHHHH
Confidence 25666665421 111 11122222211100 0123679999999999876 89999999
Q ss_pred HhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhh
Q 005667 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~ 512 (684)
||.. ..+..||+++|...
T Consensus 134 le~~---------------------~~~~~~il~~n~~~----------------------------------------- 151 (340)
T 1sxj_C 134 IERY---------------------TKNTRFCVLANYAH----------------------------------------- 151 (340)
T ss_dssp HHHT---------------------TTTEEEEEEESCGG-----------------------------------------
T ss_pred HhcC---------------------CCCeEEEEEecCcc-----------------------------------------
Confidence 9820 12344555544210
Q ss_pred ccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCCh
Q 005667 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GA 592 (684)
.+.|.+.+|.. ++.|.+++.+++.+++...+ ... .+.+++++++.+++.+ ++..
T Consensus 152 ---------~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~-----------~~~--~~~i~~~~~~~i~~~s---~G~~ 205 (340)
T 1sxj_C 152 ---------KLTPALLSQCT-RFRFQPLPQEAIERRIANVL-----------VHE--KLKLSPNAEKALIELS---NGDM 205 (340)
T ss_dssp ---------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHH-----------HTT--TCCBCHHHHHHHHHHH---TTCH
T ss_pred ---------ccchhHHhhce-eEeccCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHHc---CCCH
Confidence 24577888876 78999999999888776521 112 4578999999999975 4556
Q ss_pred HHHHHHHHHH
Q 005667 593 RGLRSLLENI 602 (684)
Q Consensus 593 R~Lr~iIe~~ 602 (684)
|.+.++++.+
T Consensus 206 r~~~~~l~~~ 215 (340)
T 1sxj_C 206 RRVLNVLQSC 215 (340)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 7666666543
No 77
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.37 E-value=2.4e-12 Score=143.19 Aligned_cols=172 Identities=23% Similarity=0.294 Sum_probs=104.3
Q ss_pred hcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++. |+|++..++.+...+.. ..+.++||+||||||||++|+++|+.+
T Consensus 179 ld~-iiGr~~~i~~l~~~l~r--------------------------------~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 179 LDP-VIGRSKEIQRVIEVLSR--------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC--------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCC-ccCcHHHHHHHHHHHhc--------------------------------cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 443 79999999998887751 012689999999999999999999997
Q ss_pred ----------CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHH
Q 005667 355 ----------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 355 ----------~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~ 424 (684)
+.+++.++++ ..|.|.. +..+..++.... ...++||||| ...+
T Consensus 226 ~~~~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~----~~~~~iLfiD----~~~~-------------- 278 (468)
T 3pxg_A 226 INNEVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAID-------------- 278 (468)
T ss_dssp HSSCSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C-----------------
T ss_pred HhCCCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHH----hcCCeEEEEe----Cchh--------------
Confidence 6778888887 3355543 334444544322 2457899999 1111
Q ss_pred HHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005667 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~ 504 (684)
+++.|++.|+. .++.+|+++|.....+.+
T Consensus 279 a~~~L~~~L~~-----------------------g~v~vI~at~~~e~~~~~---------------------------- 307 (468)
T 3pxg_A 279 ASNILKPSLAR-----------------------GELQCIGATTLDEYRKYI---------------------------- 307 (468)
T ss_dssp -----CCCTTS-----------------------SSCEEEEECCTTTTHHHH----------------------------
T ss_pred HHHHHHHhhcC-----------------------CCEEEEecCCHHHHHHHh----------------------------
Confidence 77778888761 135677776643211111
Q ss_pred hHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHh
Q 005667 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ 584 (684)
.+.|.|.+||. +|.|.+++.+++.+|++..+..+ .. ...+.+++++++.++..
T Consensus 308 -----------------~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~----~~-----~~~~~i~~~al~~l~~~ 360 (468)
T 3pxg_A 308 -----------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRY----EA-----HHRVSITDDAIEAAVKL 360 (468)
T ss_dssp -----------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTS----GG-----GSSCSCCHHHHHHHHHH
T ss_pred -----------------hcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHH----HH-----hcCCCCCHHHHHHHHHH
Confidence 14588899998 59999999999999998533221 10 12344566666665553
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.36 E-value=6.6e-12 Score=149.15 Aligned_cols=189 Identities=21% Similarity=0.273 Sum_probs=112.8
Q ss_pred hcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++. ++|+++.++.+...+... .+.++||+||||||||++|+++|+.+
T Consensus 169 ld~-viGr~~~i~~l~~~l~~~--------------------------------~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 169 LDP-VIGRDEEIRRVIQILLRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCC-CCSCHHHHHHHHHHHHCS--------------------------------SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred Ccc-cCCcHHHHHHHHHHHhcC--------------------------------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 444 799999999888877410 12689999999999999999999987
Q ss_pred ----------CCCEEEEecccccc-ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchH
Q 005667 355 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 355 ----------~~pfv~v~~s~l~~-~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e 423 (684)
+.+++.++++.+.. ..|.|.. +..+..++..... ...+.||||||+|.+...+.. .+ ..
T Consensus 216 ~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~-~g-----~~ 285 (854)
T 1qvr_A 216 VKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQ---SQGEVILFIDELHTVVGAGKA-EG-----AV 285 (854)
T ss_dssp HHTCSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHT---TCSSEEEEECCC-------------------
T ss_pred hcCCCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHh---cCCCeEEEEecHHHHhccCCc-cc-----hH
Confidence 77899999988753 3455654 5556666554321 124679999999999865321 11 12
Q ss_pred HHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchh
Q 005667 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~ 503 (684)
.+++.|+.+++. .++.+|++++.....+
T Consensus 286 ~~~~~L~~~l~~-----------------------~~i~~I~at~~~~~~~----------------------------- 313 (854)
T 1qvr_A 286 DAGNMLKPALAR-----------------------GELRLIGATTLDEYRE----------------------------- 313 (854)
T ss_dssp ------HHHHHT-----------------------TCCCEEEEECHHHHHH-----------------------------
T ss_pred HHHHHHHHHHhC-----------------------CCeEEEEecCchHHhh-----------------------------
Confidence 277788888872 1244555555221100
Q ss_pred hhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHH
Q 005667 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~ 583 (684)
....|.|.+||+. +.+++++.++..+|++.. ..+|.. ...+.++++++..+++
T Consensus 314 -----------------~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~----~~~~~~-----~~~~~i~~~al~~~~~ 366 (854)
T 1qvr_A 314 -----------------IEKDPALERRFQP-VYVDEPTVEETISILRGL----KEKYEV-----HHGVRISDSAIIAAAT 366 (854)
T ss_dssp -----------------HTTCTTTCSCCCC-EEECCCCHHHHHHHHHHH----HHHHHH-----HTTCEECHHHHHHHHH
T ss_pred -----------------hccCHHHHhCCce-EEeCCCCHHHHHHHHHhh----hhhhhh-----hcCCCCCHHHHHHHHH
Confidence 0145889999995 899999999999999753 333322 1256789999998887
Q ss_pred hc
Q 005667 584 KA 585 (684)
Q Consensus 584 ~a 585 (684)
.+
T Consensus 367 ls 368 (854)
T 1qvr_A 367 LS 368 (854)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 79
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=1.1e-11 Score=130.70 Aligned_cols=211 Identities=19% Similarity=0.217 Sum_probs=133.7
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.++|++..++.|...+..... . ..+..++|+||+|||||++++++++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~----~------------------------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYR----E------------------------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGG----T------------------------CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHc----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999999988877641100 0 013689999999999999999999988
Q ss_pred ---CCCEEEEeccccccc---------------cccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhcccccc
Q 005667 355 ---NVPFVIADATTLTQA---------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 355 ---~~pfv~v~~s~l~~~---------------gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~ 416 (684)
+.+++.++|...... ...|......+..+..... ....+.||+|||++.+....+.
T Consensus 73 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~~~~--- 146 (386)
T 2qby_A 73 FLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DYGSQVVIVLDEIDAFVKKYND--- 146 (386)
T ss_dssp TCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TCCSCEEEEEETHHHHHHSSCS---
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEcChhhhhccCcC---
Confidence 788999997643210 0112222222332222110 0123679999999999754111
Q ss_pred CCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccc
Q 005667 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~ 496 (684)
.++..|++.++.. ...++.+|++++..++
T Consensus 147 -------~~l~~l~~~~~~~--------------------~~~~~~~I~~~~~~~~------------------------ 175 (386)
T 2qby_A 147 -------DILYKLSRINSEV--------------------NKSKISFIGITNDVKF------------------------ 175 (386)
T ss_dssp -------THHHHHHHHHHSC--------------------CC--EEEEEEESCGGG------------------------
T ss_pred -------HHHHHHhhchhhc--------------------CCCeEEEEEEECCCCh------------------------
Confidence 1788888888620 1234667777663210
Q ss_pred cCCCchhhhHhHHhhhccchHHHHcCCCcccccccc-eEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCH
Q 005667 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 497 ~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d-~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~e 575 (684)
++ .+.+.+.+|+. ..+.|++++.+++.+++...+... .....+++
T Consensus 176 -------------~~----------~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~-----------~~~~~~~~ 221 (386)
T 2qby_A 176 -------------VD----------LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA-----------FKPGVLPD 221 (386)
T ss_dssp -------------GG----------GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH-----------BCSSCSCH
T ss_pred -------------Hh----------hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh-----------ccCCCCCH
Confidence 00 13355666765 389999999999999998632110 11356899
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 005667 576 NALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 576 eAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al 607 (684)
++++.+++......+++|.+.++++.+...+.
T Consensus 222 ~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 222 NVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999754334678988888887765443
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.35 E-value=8.2e-12 Score=146.08 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=132.7
Q ss_pred hhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.++. ++|++..++.+...+... .+.++||+||||||||++|+++|+.
T Consensus 184 ~~d~-~iGr~~~i~~l~~~l~~~--------------------------------~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 184 GIDP-LIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CSCC-CCSCHHHHHHHHHHHTSS--------------------------------SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCC-ccCCHHHHHHHHHHHhcc--------------------------------CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 4444 799999999888776410 1378999999999999999999988
Q ss_pred h----------CCCEEEEecccccc-ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCch
Q 005667 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 354 l----------~~pfv~v~~s~l~~-~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~ 422 (684)
+ +..++.+++..+.. ..+.|.. +..+..++.... ...++||||||+|.+...+.. +...
T Consensus 231 l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~----~~~~~iL~IDEi~~l~~~~~~-----~~~~ 300 (758)
T 1r6b_X 231 IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAA-----SGGQ 300 (758)
T ss_dssp HHHTCSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHS----SSSCEEEEETTTTTTTTSCCS-----SSCH
T ss_pred HHhCCCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHH----hcCCeEEEEechHHHhhcCCC-----Ccch
Confidence 7 55677788776653 3466654 566666665432 235689999999999765221 1112
Q ss_pred HHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCch
Q 005667 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~ 502 (684)
..+++.|..+++ ..++.+|++++..+
T Consensus 301 ~~~~~~L~~~l~-----------------------~~~~~~I~at~~~~------------------------------- 326 (758)
T 1r6b_X 301 VDAANLIKPLLS-----------------------SGKIRVIGSTTYQE------------------------------- 326 (758)
T ss_dssp HHHHHHHSSCSS-----------------------SCCCEEEEEECHHH-------------------------------
T ss_pred HHHHHHHHHHHh-----------------------CCCeEEEEEeCchH-------------------------------
Confidence 235555555554 12355666655211
Q ss_pred hhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHH
Q 005667 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La 582 (684)
+...+ ...|.|.+||+ .+.+.+++.++..+|+...+ ..|... ..+.+++++++.++
T Consensus 327 ------~~~~~--------~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~----~~~~~~-----~~v~~~~~al~~~~ 382 (758)
T 1r6b_X 327 ------FSNIF--------EKDRALARRFQ-KIDITEPSIEETVQIINGLK----PKYEAH-----HDVRYTAKAVRAAV 382 (758)
T ss_dssp ------HHCCC--------CCTTSSGGGEE-EEECCCCCHHHHHHHHHHHH----HHHHHH-----HTCCCCHHHHHHHH
T ss_pred ------Hhhhh--------hcCHHHHhCce-EEEcCCCCHHHHHHHHHHHH----HHHHHh-----cCCCCCHHHHHHHH
Confidence 00111 13478999998 79999999999999998633 333221 15678899998888
Q ss_pred HhcC---CCCCChHHHHHHHHHHHH
Q 005667 583 KKAI---SKNTGARGLRSLLENILM 604 (684)
Q Consensus 583 ~~ay---~~~~GAR~Lr~iIe~~l~ 604 (684)
..+. ....-...+..++..+..
T Consensus 383 ~~s~~~i~~~~lp~~~i~lld~a~~ 407 (758)
T 1r6b_X 383 ELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_dssp HHHHHHCTTSCTTHHHHHHHHHHHH
T ss_pred HHhhhhcccccCchHHHHHHHHHHH
Confidence 7542 222223345555555443
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.34 E-value=1.5e-11 Score=130.48 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=104.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEeccccccccccccchHHHHHHHHhh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p------------------------fv~v~~s~l~~~gyvG~~~~~~l~~l~~~ 386 (684)
+.+||+||||+|||++|+++|+.+... +..++...- ....+ .+.++++.+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~---i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLG---VDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBC---HHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCC---HHHHHHHHHH
Confidence 579999999999999999999988532 233322100 01112 2334454443
Q ss_pred cchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEec
Q 005667 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~t 466 (684)
...........|++|||+|.+... .+++||+.||. ...+++||++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEe---------------------p~~~~~~Il~ 144 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEE---------------------PPAETWFFLA 144 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTS---------------------CCTTEEEEEE
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 322111245689999999999877 89999999982 1234666666
Q ss_pred CCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHH
Q 005667 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~ 546 (684)
++..+ .+.|.+++|.. ++.|.+++.+++.
T Consensus 145 t~~~~--------------------------------------------------~l~~ti~SRc~-~~~~~~~~~~~~~ 173 (334)
T 1a5t_A 145 TREPE--------------------------------------------------RLLATLRSRCR-LHYLAPPPEQYAV 173 (334)
T ss_dssp ESCGG--------------------------------------------------GSCHHHHTTSE-EEECCCCCHHHHH
T ss_pred eCChH--------------------------------------------------hCcHHHhhcce-eeeCCCCCHHHHH
Confidence 54210 14577788875 7999999999999
Q ss_pred HHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHH
Q 005667 547 QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 547 ~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe 600 (684)
+++.. ...+++++++.++..+ ++..|...+.++
T Consensus 174 ~~L~~------------------~~~~~~~~~~~l~~~s---~G~~r~a~~~l~ 206 (334)
T 1a5t_A 174 TWLSR------------------EVTMSQDALLAALRLS---AGSPGAALALFQ 206 (334)
T ss_dssp HHHHH------------------HCCCCHHHHHHHHHHT---TTCHHHHHHTTS
T ss_pred HHHHH------------------hcCCCHHHHHHHHHHc---CCCHHHHHHHhc
Confidence 88764 1257889999888864 444565544443
No 82
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.32 E-value=1.8e-11 Score=135.79 Aligned_cols=236 Identities=14% Similarity=0.128 Sum_probs=141.2
Q ss_pred HHHHhhcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005667 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 270 el~~~Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAra 349 (684)
.+.+.+.. |+||+.+|+.|.-++.....+ .....|+||.|+||| ||++|++
T Consensus 207 ~l~~sIap-I~G~e~vK~aLll~L~GG~~k---------------------------~rgdihVLL~G~PGt-KS~Lar~ 257 (506)
T 3f8t_A 207 TFARAIAP-LPGAEEVGKMLALQLFSCVGK---------------------------NSERLHVLLAGYPVV-CSEILHH 257 (506)
T ss_dssp HHHHHHCC-STTCHHHHHHHHHHHTTCCSS---------------------------GGGCCCEEEESCHHH-HHHHHHH
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHcCCccc---------------------------cCCceeEEEECCCCh-HHHHHHH
Confidence 47778888 999999999988777411000 001149999999999 9999999
Q ss_pred H-HHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHH
Q 005667 350 L-ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 350 I-A~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~ 428 (684)
+ ++.+... +......-...+..+. .... .. +...++.+..+.+||+|||||+++.++ +|.+
T Consensus 258 i~~~i~pR~-~ft~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~--------------~qsa 319 (506)
T 3f8t_A 258 VLDHLAPRG-VYVDLRRTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEP--------------HRWA 319 (506)
T ss_dssp HHHHTCSSE-EEEEGGGCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHH--------------HHHH
T ss_pred HHHHhCCCe-EEecCCCCCccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHH--------------HHHH
Confidence 9 7776432 2221110000111111 0000 11 233455666788999999999999988 9999
Q ss_pred HHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhH
Q 005667 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ 508 (684)
|+++||.+.++|. |. . -..++.+|+|.|... .|.... .
T Consensus 320 LlEaMEe~~VtI~--G~---------~-lparf~VIAA~NP~~--------------~yd~~~----------------s 357 (506)
T 3f8t_A 320 LMEAMDKGTVTVD--GI---------A-LNARCAVLAAINPGE--------------QWPSDP----------------P 357 (506)
T ss_dssp HHHHHHHSEEEET--TE---------E-EECCCEEEEEECCCC----------------CCSC----------------G
T ss_pred HHHHHhCCcEEEC--CE---------E-cCCCeEEEEEeCccc--------------ccCCCC----------------C
Confidence 9999997777762 21 1 234577778877532 111000 0
Q ss_pred HhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHH-----HHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHH
Q 005667 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV-----QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 509 ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~-----~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~ 583 (684)
. + ...+.+++++|||.++...++...+.. .++. ....++|....+...+...+++++.++|.+
T Consensus 358 ~-~--------~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 358 I-A--------RIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLLYAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp G-G--------GCCSCHHHHTTCSEEEETTC--------------CC---HHHHHHHHHHHHHHCSCCEECHHHHHHHHH
T ss_pred c-c--------ccCCChHHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHHHHHhcCCCceeCHHHHHHHHH
Confidence 0 1 124789999999988777666443221 1222 234455555444345578899999988886
Q ss_pred hc---------------CCCCCChHHHHHHHHHHHHHH
Q 005667 584 KA---------------ISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 584 ~a---------------y~~~~GAR~Lr~iIe~~l~~a 606 (684)
.. ...+..+|.+..++.-.-..|
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A 463 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHA 463 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHHHHHHH
Confidence 41 123456899999987443333
No 83
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.31 E-value=3.4e-12 Score=120.59 Aligned_cols=116 Identities=27% Similarity=0.334 Sum_probs=75.7
Q ss_pred cccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005667 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l--- 354 (684)
.++|++.+++.+...+.. ....++||+||||||||++|+++++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~ 70 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSR--------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQG 70 (187)
T ss_dssp CCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTT
T ss_pred hhhcchHHHHHHHHHHhC--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999998888777631 012689999999999999999999987
Q ss_pred -------CCCEEEEecccccc-ccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHH
Q 005667 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~v~~s~l~~-~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq 426 (684)
+.+++.+++..+.. ..+.|.. ...+..++.... ....+.||||||+|.+...+.......+ ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~~~~~~~-----~~ 141 (187)
T 2p65_A 71 DVPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQ---DAEGQVVMFIDEIHTVVGAGAVAEGALD-----AG 141 (187)
T ss_dssp CSCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHH---HTTTSEEEEETTGGGGSSSSSSCTTSCC-----TH
T ss_pred CCcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHH---hcCCceEEEEeCHHHhcccccccccchH-----HH
Confidence 66788888776542 1132322 333444433221 1124569999999999754221111112 77
Q ss_pred HHHHHHHh
Q 005667 427 QALLKMLE 434 (684)
Q Consensus 427 ~~LL~~LE 434 (684)
+.|+..++
T Consensus 142 ~~l~~~~~ 149 (187)
T 2p65_A 142 NILKPMLA 149 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 78888877
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=7.1e-12 Score=132.22 Aligned_cols=144 Identities=16% Similarity=0.210 Sum_probs=97.9
Q ss_pred ChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh------
Q 005667 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV------ 354 (684)
Q Consensus 281 GQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l------ 354 (684)
||+++++.|..++... . ..++||+||||+|||++|+++|+.+
T Consensus 1 g~~~~~~~L~~~i~~~-------------------------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~ 48 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------------------------E-GISILINGEDLSYPREVSLELPEYVEKFPPK 48 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------------------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCC
T ss_pred ChHHHHHHHHHHHHCC-------------------------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhcc
Confidence 7888999888887510 0 1689999999999999999999864
Q ss_pred CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
...++.++++.- ..+. ..+++++..+..........|++|||+|.+... .+++||+.||
T Consensus 49 ~~d~~~l~~~~~----~~~i---d~ir~li~~~~~~p~~~~~kvviIdead~lt~~--------------a~naLLk~LE 107 (305)
T 2gno_A 49 ASDVLEIDPEGE----NIGI---DDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ--------------AANAFLKALE 107 (305)
T ss_dssp TTTEEEECCSSS----CBCH---HHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH--------------HHHHTHHHHH
T ss_pred CCCEEEEcCCcC----CCCH---HHHHHHHHHHhhccccCCceEEEeccHHHhCHH--------------HHHHHHHHHh
Confidence 345777765421 2222 223444433221111234679999999999887 8999999999
Q ss_pred CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhhhHhHHhhhcc
Q 005667 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~ 514 (684)
. ...+++||++++..
T Consensus 108 e---------------------p~~~t~fIl~t~~~-------------------------------------------- 122 (305)
T 2gno_A 108 E---------------------PPEYAVIVLNTRRW-------------------------------------------- 122 (305)
T ss_dssp S---------------------CCTTEEEEEEESCG--------------------------------------------
T ss_pred C---------------------CCCCeEEEEEECCh--------------------------------------------
Confidence 2 12346666655421
Q ss_pred chHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhc
Q 005667 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 515 ~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~ 551 (684)
..+.|.+++| ++.|.+++++++.+.+.+
T Consensus 123 ------~kl~~tI~SR---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 123 ------HYLLPTIKSR---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp ------GGSCHHHHTT---SEEEECCCCHHHHHHHHH
T ss_pred ------HhChHHHHce---eEeCCCCCHHHHHHHHHH
Confidence 0256888999 899999999999998875
No 85
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.28 E-value=6.4e-12 Score=147.21 Aligned_cols=173 Identities=24% Similarity=0.324 Sum_probs=108.8
Q ss_pred hcccccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 275 Ld~~VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++. |+|+++.++.+...+... .+.++||+||||||||++|+++|+.+
T Consensus 179 ld~-iiG~~~~i~~l~~~l~~~--------------------------------~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 179 LDP-VIGRSKEIQRVIEVLSRR--------------------------------TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCC-CCCCHHHHHHHHHHHHCS--------------------------------SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCC-ccCchHHHHHHHHHHhCC--------------------------------CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 443 799999999998887510 12689999999999999999999997
Q ss_pred ----------CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchhccccccCCCCchHH
Q 005667 355 ----------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 355 ----------~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~r~~~~~~~d~~~e~ 424 (684)
+.+++.+++ ...|.|+. +..+..++..+. ...++||||| ... +
T Consensus 226 ~~~~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~----~~~~~iLfiD----~~~---------~----- 278 (758)
T 3pxi_A 226 INNEVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI---------D----- 278 (758)
T ss_dssp HSSCSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C-----------------
T ss_pred hcCCCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHH----hcCCEEEEEc----Cch---------h-----
Confidence 677888877 24466654 445556655432 2467899999 111 1
Q ss_pred HHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCCCcCcccccccccCCCchhh
Q 005667 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~IGf~~~~~~~~~~~~~~~~~ 504 (684)
.++.|+..|+. ..+.+|+++|.....+.+
T Consensus 279 ~~~~L~~~l~~-----------------------~~v~~I~at~~~~~~~~~---------------------------- 307 (758)
T 3pxi_A 279 ASNILKPSLAR-----------------------GELQCIGATTLDEYRKYI---------------------------- 307 (758)
T ss_dssp -----CCCTTS-----------------------SSCEEEEECCTTTTHHHH----------------------------
T ss_pred HHHHHHHHHhc-----------------------CCEEEEeCCChHHHHHHh----------------------------
Confidence 77778877761 135667776643321111
Q ss_pred hHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHh
Q 005667 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 505 ~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ 584 (684)
...|.|++||. +|.|.+++.+++.+|++..+.. |. ....+.+++++++.+++.
T Consensus 308 -----------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~----~~-----~~~~~~i~~~al~~~~~~ 360 (758)
T 3pxi_A 308 -----------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLRDR----YE-----AHHRVSITDDAIEAAVKL 360 (758)
T ss_dssp -----------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTT----SG-----GGSSCSCCHHHHHHHHHH
T ss_pred -----------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHH----HH-----HhcCCCCCHHHHHHHHHH
Confidence 14588999995 6999999999999999853221 11 112456788888877764
Q ss_pred c
Q 005667 585 A 585 (684)
Q Consensus 585 a 585 (684)
+
T Consensus 361 s 361 (758)
T 3pxi_A 361 S 361 (758)
T ss_dssp H
T ss_pred h
Confidence 3
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.04 E-value=3.1e-09 Score=113.65 Aligned_cols=220 Identities=19% Similarity=0.148 Sum_probs=125.4
Q ss_pred ccccChHHHHHHHHHHH-HhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEE--EccCCCcHHHHHHHHHHH
Q 005667 277 KFVIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILL--MGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 277 ~~VvGQd~aK~~L~~aV-~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL--~GPpGTGKT~LAraIA~~ 353 (684)
..++|.+..++.|..++ ... .... ...+..++| +||+|+|||++++.+++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~----~~~~----------------------~~~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRL----LSGA----------------------GLSDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHH----HTSS----------------------CBCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHH----hcCC----------------------CCCCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 34799999999888877 411 0000 001268889 999999999999999877
Q ss_pred h---------CCCEEEEeccccccc-----------c----ccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccch
Q 005667 354 V---------NVPFVIADATTLTQA-----------G----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 354 l---------~~pfv~v~~s~l~~~-----------g----yvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~ 409 (684)
+ +.+++.++|...... + ..+......+..+... ......+.||+|||+|.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~---l~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 76 VSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDN---LYVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp HHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHH---HHHHTCEEEEEEESTHHHHS
T ss_pred HHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH---HHhcCCeEEEEEeCHHHHhh
Confidence 6 346778887432110 0 0011111111111111 00113467999999999864
Q ss_pred hccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeec--CceEEEecCCcccHHHHHHhccccCCCCc
Q 005667 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT--KDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~Idt--sniIfI~tgn~~dLe~~i~~r~~~~~IGf 487 (684)
.+. ....++..|++.++.. ..+. .++.+|++++..++.+.+..
T Consensus 153 ~~~--------~~~~~l~~l~~~~~~~------------------~~~~~~~~v~lI~~~~~~~~~~~l~~--------- 197 (412)
T 1w5s_A 153 SPR--------IAAEDLYTLLRVHEEI------------------PSRDGVNRIGFLLVASDVRALSYMRE--------- 197 (412)
T ss_dssp CTT--------SCHHHHHHHHTHHHHS------------------CCTTSCCBEEEEEEEEETHHHHHHHH---------
T ss_pred ccC--------cchHHHHHHHHHHHhc------------------ccCCCCceEEEEEEeccccHHHHHhh---------
Confidence 200 0112677777777610 0011 35667766653222111100
Q ss_pred CcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHhhC
Q 005667 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~~~ 567 (684)
..+.+.+|+...+.|.+|+.+++.+++...+...
T Consensus 198 -----------------------------------~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~----------- 231 (412)
T 1w5s_A 198 -----------------------------------KIPQVESQIGFKLHLPAYKSRELYTILEQRAELG----------- 231 (412)
T ss_dssp -----------------------------------HCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH-----------
T ss_pred -----------------------------------hcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc-----------
Confidence 0023334444458999999999999987532211
Q ss_pred CcceecCHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHH
Q 005667 568 GVKLHFTENALRLIAKKAISKN---TGARGLRSLLENILMDA 606 (684)
Q Consensus 568 gi~l~i~eeAl~~La~~ay~~~---~GAR~Lr~iIe~~l~~a 606 (684)
+....+++++++.+++.+.... ++.|.+..+++..+..+
T Consensus 232 ~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 232 LRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp BCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 1123588999999998753222 66888888887665444
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.69 E-value=7.1e-08 Score=125.58 Aligned_cols=205 Identities=16% Similarity=0.130 Sum_probs=115.0
Q ss_pred cceEEEEccCCCcHHHHHHH-HHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcc---hhh----HhhcCCEEEE
Q 005667 330 KSNILLMGPTGSGKTLLAKT-LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNV----AAAQQGIVYI 401 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAra-IA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~---~~v----~~a~~gVLfI 401 (684)
.+++||+||||||||++|+. +++..+.+++.++++..+.+. .....+...+.... +.+ ....++||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~----~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTE----HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHH----HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHH----HHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 47999999999999999955 455446778888887665321 11122222211110 100 0234579999
Q ss_pred ccccccchhccccccCCCCchHHHHHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhcc
Q 005667 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 402 DEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~ 480 (684)
||++....++. ..+.++..|.++|| |+.. +.... ..+...++.||+|.|..+
T Consensus 1343 DEinmp~~d~y--------g~q~~lelLRq~le~gg~y---------d~~~~-~~~~~~~i~lIaA~Npp~--------- 1395 (2695)
T 4akg_A 1343 DEINLPKLDKY--------GSQNVVLFLRQLMEKQGFW---------KTPEN-KWVTIERIHIVGACNPPT--------- 1395 (2695)
T ss_dssp ETTTCSCCCSS--------SCCHHHHHHHHHHHTSSEE---------CTTTC-CEEEEESEEEEEEECCTT---------
T ss_pred ccccccccccc--------CchhHHHHHHHHHhcCCEE---------EcCCC-cEEEecCEEEEEecCCCc---------
Confidence 99997544321 11237777788888 3222 21111 123447889998887431
Q ss_pred ccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHH
Q 005667 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 481 ~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy 560 (684)
+-| +..+.|.|++|+ .++.++.++.+++.+|+...+....+..
T Consensus 1396 ---~gG---------------------------------R~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~~l~~~ 1438 (2695)
T 4akg_A 1396 ---DPG---------------------------------RIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKAIFKLV 1438 (2695)
T ss_dssp ---STT---------------------------------CCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHHHTTSS
T ss_pred ---cCC---------------------------------CccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHHHhccC
Confidence 000 012568888999 5899999999999999987544332100
Q ss_pred HHHHhhCCcceecCH---HHHHHHHHhc-----CCCCCChHHHHHHHHHHHHH
Q 005667 561 RKMFQMNGVKLHFTE---NALRLIAKKA-----ISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 561 ~~~l~~~gi~l~i~e---eAl~~La~~a-----y~~~~GAR~Lr~iIe~~l~~ 605 (684)
. ...+..-.+.. ++...+.+.- ..--++.|.|-++++.++..
T Consensus 1439 -~--~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~ 1488 (2695)
T 4akg_A 1439 -P--EFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTA 1488 (2695)
T ss_dssp -G--GGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHH
T ss_pred -H--HHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhc
Confidence 0 00000001111 1222222210 12356889999999987764
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.67 E-value=8e-07 Score=92.27 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=41.9
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
++|.++..+.|..++.. ...++++||+|+|||++++.+++..+ .
T Consensus 14 ~~gR~~el~~L~~~l~~----------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~ 57 (350)
T 2qen_A 14 IFDREEESRKLEESLEN----------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP--G 57 (350)
T ss_dssp SCSCHHHHHHHHHHHHH----------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--E
T ss_pred cCChHHHHHHHHHHHhc----------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--c
Confidence 68999999998887741 15889999999999999999998875 6
Q ss_pred EEEeccc
Q 005667 359 VIADATT 365 (684)
Q Consensus 359 v~v~~s~ 365 (684)
+.+++..
T Consensus 58 ~~~~~~~ 64 (350)
T 2qen_A 58 ILIDCRE 64 (350)
T ss_dssp EEEEHHH
T ss_pred EEEEeec
Confidence 6777653
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.62 E-value=6.7e-08 Score=92.50 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=49.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEeccccccccccccchHHHHHHHHhhcc---hhhHhhcCCEEEEcc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~---~~v~~a~~gVLfIDE 403 (684)
.+++|+||||||||+++++++..+ +..++.+++.++.. .+...+.... ..-....+.+|+|||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF----------RLKHLMDEGKDTKFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH----------HHHHHHHHTCCSHHHHHHHTCSEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH----------HHHHHhcCchHHHHHHHhcCCCEEEEeC
Confidence 689999999999999999999887 44555566654431 0111111000 001123567999999
Q ss_pred ccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 404 IDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
++....+ ...+..|..+++
T Consensus 109 ~~~~~~~------------~~~~~~l~~ll~ 127 (180)
T 3ec2_A 109 LGSERLS------------DWQRELISYIIT 127 (180)
T ss_dssp CSSSCCC------------HHHHHHHHHHHH
T ss_pred CCCCcCC------------HHHHHHHHHHHH
Confidence 9854221 115566666665
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.41 E-value=2.6e-07 Score=89.78 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=32.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~ 367 (684)
.+++|+||||||||++|+++++.+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 689999999999999999999887 5678888886653
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.40 E-value=7.8e-06 Score=84.85 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=30.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~ 365 (684)
..++++||+|+|||+|++.+++.+...++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 48899999999999999999998877778888764
No 92
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.34 E-value=1.8e-06 Score=91.13 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=103.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~----~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDk 406 (684)
+.+||+||+|+||++.++.+++.+. .++..+.. . + ..+....+..+ ...+ -.+...|++|||+|.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~--~--~~~~~~l~~~~-~~~p---lf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI---D--P--NTDWNAIFSLC-QAMS---LFASRQTLLLLLPEN 87 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC---C--T--TCCHHHHHHHH-HHHH---HCCSCEEEEEECCSS
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe---c--C--CCCHHHHHHHh-cCcC---CccCCeEEEEECCCC
Confidence 6899999999999999999988662 12221211 1 1 12222222221 2111 123467999999999
Q ss_pred -cchhccccccCCCCchHHHHHHHHHHHhCceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHHHHhccccCCC
Q 005667 407 -ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 407 -L~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~i~~r~~~~~I 485 (684)
+..+ .+++|++.+|. ...+++||++++..+ +
T Consensus 88 kl~~~--------------~~~aLl~~le~---------------------p~~~~~~il~~~~~~--~----------- 119 (343)
T 1jr3_D 88 GPNAA--------------INEQLLTLTGL---------------------LHDDLLLIVRGNKLS--K----------- 119 (343)
T ss_dssp CCCTT--------------HHHHHHHHHTT---------------------CBTTEEEEEEESCCC--T-----------
T ss_pred CCChH--------------HHHHHHHHHhc---------------------CCCCeEEEEEcCCCC--h-----------
Confidence 8766 89999999982 112244444333110 0
Q ss_pred CcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchHHHHHHHHHHHHh
Q 005667 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 Gf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l~~L~kqy~~~l~ 565 (684)
...... +.+.+.+|- .++.|.+++.+++.+.+...+.
T Consensus 120 -----------------~~~~~k--------------~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~----------- 156 (343)
T 1jr3_D 120 -----------------AQENAA--------------WFTALANRS-VQVTCQTPEQAQLPRWVAARAK----------- 156 (343)
T ss_dssp -----------------TTTTSH--------------HHHHHTTTC-EEEEECCCCTTHHHHHHHHHHH-----------
T ss_pred -----------------hhHhhH--------------HHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHH-----------
Confidence 000001 123344454 3799999999999887765322
Q ss_pred hCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q 005667 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 566 ~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~ 604 (684)
.. .+.+++++++.|++.+ +++.|.+.+.++++..
T Consensus 157 ~~--g~~i~~~a~~~l~~~~---~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 157 QL--NLELDDAANQVLCYCY---EGNLLALAQALERLSL 190 (343)
T ss_dssp HT--TCEECHHHHHHHHHSS---TTCHHHHHHHHHHHHH
T ss_pred Hc--CCCCCHHHHHHHHHHh---chHHHHHHHHHHHHHH
Confidence 12 6789999999999963 5678999999998764
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.34 E-value=5.9e-07 Score=84.70 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=51.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEcccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL 407 (684)
..++|+||+|+|||+|+++++..+ +...+.++..++... .+ ...+.+|+|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------~~---------~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------DA---------AFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------GG---------GGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------HH---------HhCCCEEEEeCcccc
Confidence 689999999999999999999887 556777777665421 00 124579999999997
Q ss_pred chhccccccCCCCchHHHHHHHHHHHh
Q 005667 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
... .+..|+.+++
T Consensus 96 ~~~--------------~~~~l~~li~ 108 (149)
T 2kjq_A 96 GNE--------------EQALLFSIFN 108 (149)
T ss_dssp CSH--------------HHHHHHHHHH
T ss_pred ChH--------------HHHHHHHHHH
Confidence 655 4666777765
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.24 E-value=1.6e-05 Score=103.91 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=51.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
.+.++.||+|||||++++++|+.++.+++.++|++-... ..+..++..+ ...++++++||++++..+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~--------~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY--------QVLSRLLVGI-----TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh--------hHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence 578999999999999999999999999999999865431 1222233221 124589999999999887
No 95
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.23 E-value=3.7e-06 Score=105.62 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=68.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc-----------cccccc----chHHHHHHHHhhcchhhH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGE----DVESILYKLLTVSDYNVA 392 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~-----------~gyvG~----~~~~~l~~l~~~a~~~v~ 392 (684)
+.+|++||||||||+||++++.+. +.|-+.++..+..+ ..|+++ + +..++.++..+.
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~-e~~l~~~~~~ar---- 1157 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEICDALAR---- 1157 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHHH----
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccch-HHHHHHHHHHHH----
Confidence 569999999999999999998665 56666666655321 345665 4 566777665442
Q ss_pred hhcCCEEEEccccccchhccccccCCC--C-chHHHHHHHHHHHhC
Q 005667 393 AAQQGIVYIDEVDKITKKAESLNISRD--V-SGEGVQQALLKMLEG 435 (684)
Q Consensus 393 ~a~~gVLfIDEIDkL~~~r~~~~~~~d--~-~~e~vq~~LL~~LEg 435 (684)
...+++||+||++.|.+.++..+...+ . -.+++.+++|.-|++
T Consensus 1158 ~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1158 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 457899999999999998553221122 1 233467888888874
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.16 E-value=5.8e-06 Score=85.70 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.+++|+||||||||++|++||+.+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 6899999999999999999999763
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.13 E-value=5.3e-07 Score=94.84 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=31.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEeccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~----~pfv~v~~s~l~ 367 (684)
.+++|+||||||||+||+++|..+. .+++.+++.++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 7999999999999999999988664 677777776553
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.12 E-value=5.2e-06 Score=109.25 Aligned_cols=152 Identities=20% Similarity=0.269 Sum_probs=93.6
Q ss_pred cceEEEEccCCCcHHHHHHH-HHHHhCCCEEEEeccccccccccccchHHHHHHHHhh----cc----hhhH----hhcC
Q 005667 330 KSNILLMGPTGSGKTLLAKT-LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTV----SD----YNVA----AAQQ 396 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAra-IA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~----a~----~~v~----~a~~ 396 (684)
..++||+||||||||.+++. +++..+.+++.++++.-+.+ ..+...+.. .. +.+- ....
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 36999999999999977655 44444556788888766532 222222221 10 1111 1234
Q ss_pred CEEEEccccccchhccccccCCCCchHHHHHHHHHHHh-CceeeecCCCCccCCCCCeEEeecCceEEEecCCcccHHHH
Q 005667 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 397 gVLfIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Vp~~G~~~~~~~~~i~IdtsniIfI~tgn~~dLe~~ 475 (684)
.|+||||++.-..+.. ....+...|.++|| ++... .... -.+...++.||+|.|..+
T Consensus 1376 ~VlFiDDiNmp~~D~y--------GtQ~~ielLrqlld~~g~yd---------~~~~-~~~~i~d~~~vaamnPp~---- 1433 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKY--------GTQRVITFIRQMVEKGGFWR---------TSDH-TWIKLDKIQFVGACNPPT---- 1433 (3245)
T ss_dssp EEEEETTTTCCCCCTT--------SCCHHHHHHHHHHHHSEEEE---------TTTT-EEEEESSEEEEEEECCTT----
T ss_pred EEEEecccCCCCcccc--------ccccHHHHHHHHHHcCCeEE---------CCCC-eEEEecCeEEEEEcCCCC----
Confidence 6999999998554311 11237788888888 43332 1111 133457888998876431
Q ss_pred HHhccccCCCCcCcccccccccCCCchhhhHhHHhhhccchHHHHcCCCcccccccceEEEcCCCCHHHHHHHHhchH
Q 005667 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 476 i~~r~~~~~IGf~~~~~~~~~~~~~~~~~~~~~ll~~v~~~dl~~~~f~PeLl~R~d~iI~f~pLs~eel~~Il~~~l 553 (684)
.-| .+.+.|.|++||. ++.++.++.+++.+|....+
T Consensus 1434 --------~gG---------------------------------r~~l~~Rf~r~F~-vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1434 --------DAG---------------------------------RVQLTHRFLRHAP-ILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp --------STT---------------------------------CCCCCHHHHTTCC-EEECCCCCHHHHHHHHHHHH
T ss_pred --------CCC---------------------------------CccCCHHHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence 000 0125688888888 58999999999999987543
No 99
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.87 E-value=1e-05 Score=80.91 Aligned_cols=77 Identities=12% Similarity=0.298 Sum_probs=48.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
.++||+||||||||++|.++|+.+....+.+..+. ..+ . +.. .....||+|||++.-..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f-~----------l~~------l~~~kIiiLDEad~~~~~ 118 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF-W----------LEP------LTDTKVAMLDDATTTCWT 118 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG-G----------GGG------GTTCSSEEEEEECHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh-h----------hcc------cCCCCEEEEECCCchhHH
Confidence 57999999999999999999999865432211110 000 0 000 012359999999853221
Q ss_pred ccccccCCCCchHHHHHHHHHHHhCceeee
Q 005667 411 AESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~V 440 (684)
.+...+..+|||..+.+
T Consensus 119 -------------~~d~~lrn~ldG~~~~i 135 (212)
T 1tue_A 119 -------------YFDTYMRNALDGNPISI 135 (212)
T ss_dssp -------------HHHHHCHHHHHTCCEEE
T ss_pred -------------HHHHHHHHHhCCCcccH
Confidence 15567788889765544
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.70 E-value=2.8e-05 Score=82.72 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=43.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~--pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~ 408 (684)
+.++|+||||||||+||.++|...+. .|+.....+.. ..+. .+.+..+..+.+. +.. .+ +|+|||++.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v-~~~~-~~le~~l~~i~~~----l~~-~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL-SGYN-TDFNVFVDDIARA----MLQ-HR-VIVIDSLKNVI 195 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSS-TTCB-CCHHHHHHHHHHH----HHH-CS-EEEEECCTTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhh-hhhh-cCHHHHHHHHHHH----Hhh-CC-EEEEecccccc
Confidence 56799999999999999999876543 46665222221 1111 2223444333322 111 23 99999999996
Q ss_pred hh
Q 005667 409 KK 410 (684)
Q Consensus 409 ~~ 410 (684)
..
T Consensus 196 ~~ 197 (331)
T 2vhj_A 196 GA 197 (331)
T ss_dssp --
T ss_pred cc
Confidence 64
No 101
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.64 E-value=4.4e-05 Score=75.55 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=45.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--------C-CCEEEEecccccccccc-------------ccch-HHHHHHHHhhc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV--------N-VPFVIADATTLTQAGYV-------------GEDV-ESILYKLLTVS 387 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l--------~-~pfv~v~~s~l~~~gyv-------------G~~~-~~~l~~l~~~a 387 (684)
...|++|+||+|||++|..++... + .+++..++.++.. ++. ++.. ...+...+..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI-PHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS-CCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc-cccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 578999999999999998864332 3 5666667665542 121 1100 1122222111
Q ss_pred chhhHhhcCCEEEEccccccchh
Q 005667 388 DYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 388 ~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
....++||+|||++.+.+.
T Consensus 84 ----~~~~~~vliIDEAq~l~~~ 102 (199)
T 2r2a_A 84 ----PENIGSIVIVDEAQDVWPA 102 (199)
T ss_dssp ----GGGTTCEEEETTGGGTSBC
T ss_pred ----cccCceEEEEEChhhhccC
Confidence 2235789999999999654
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.52 E-value=0.0012 Score=87.42 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=50.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccchh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~~ 410 (684)
.+..+.||+|||||++++.+|+.++.+++.++|++-... ..+..++... ...++..++|||+++..+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~--------~~~g~i~~G~-----~~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL--------QAMSRIFVGL-----CQCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH--------HHHHHHHhhH-----hhcCcEEEehhhhcCCHH
Confidence 455789999999999999999999999999999764421 2222333221 134678999999999877
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.38 E-value=0.00023 Score=90.79 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=58.7
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---cccc-----------cchHHHHHHHHhhcchhh
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVG-----------EDVESILYKLLTVSDYNV 391 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~---gyvG-----------~~~~~~l~~l~~~a~~~v 391 (684)
+..+++|+||||||||+||.+++... +...+.++....... ...| ...+..+..+. ..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~----~lv 1501 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD----ALA 1501 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH----HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHH----HHH
Confidence 35899999999999999999997665 445666666543211 0111 01122222222 223
Q ss_pred HhhcCCEEEEccccccchhccc-cccC-CCCc-hHHHHHHHHHHHh
Q 005667 392 AAAQQGIVYIDEVDKITKKAES-LNIS-RDVS-GEGVQQALLKMLE 434 (684)
Q Consensus 392 ~~a~~gVLfIDEIDkL~~~r~~-~~~~-~d~~-~e~vq~~LL~~LE 434 (684)
......+|+|||++.+.+.+.. +.++ .... ++++..++|..|.
T Consensus 1502 r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~ 1547 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 1547 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHH
T ss_pred hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHH
Confidence 4467889999999988774321 1111 1222 3445566666554
No 104
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=97.20 E-value=0.0011 Score=58.26 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHhchHHHHHHHHHHHHhhCCcceecCHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005667 538 LALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 538 ~pLs~eel~~Il~~~l~~L~kqy~~~l~~~gi~l~i~eeAl~~La~~ay~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+.|+++|..+|.++++ +.++ .+........+.++++|+..|++. |..+.|+|+|++.|.+++..+..++..
T Consensus 1 sGYt~~EK~~IAk~~L--iPkq-l~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~~ 71 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHL--LPKQ-IERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLLL 71 (94)
T ss_dssp CCCCHHHHHHHHHHTH--HHHH-HHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc--cHHH-HHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999863 3333 333444455799999999999997 999999999999999999998887764
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.16 E-value=0.00026 Score=66.72 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=30.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~ 365 (684)
..++|.|+||+|||++|+.+++.++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 57899999999999999999999988888766543
No 106
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.14 E-value=0.00023 Score=67.68 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=28.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
..++|+|+||+|||++|+.+|+.++.+++..|
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 68999999999999999999999998887544
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.14 E-value=0.001 Score=64.33 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
.+.|+||+|+|||||++.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999886444
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.05 E-value=0.0019 Score=71.14 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.+++|.|+||||||+++.+++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998777
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.96 E-value=0.00043 Score=67.21 Aligned_cols=32 Identities=50% Similarity=0.750 Sum_probs=28.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
..++|+||||+|||++++.+|+.++.+++..+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 58999999999999999999999998876443
No 110
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.00057 Score=63.60 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
.++|.|+||+|||++|+.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 6889999999999999999999998876544
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.86 E-value=0.0014 Score=63.56 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.-++++||+|+|||+++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999986665443
No 112
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.83 E-value=0.00058 Score=64.90 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=27.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
..++|+|+||+|||++|+.||+.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 46899999999999999999999998876433
No 113
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.82 E-value=0.00062 Score=63.82 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
.+++|.|++|+|||++|+.||+.++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 6899999999999999999999999888643
No 114
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.78 E-value=0.00058 Score=64.57 Aligned_cols=30 Identities=40% Similarity=0.669 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..++|.|+||+|||++|+.||+.++.+++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 368999999999999999999999877653
No 115
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.77 E-value=0.003 Score=62.34 Aligned_cols=33 Identities=33% Similarity=0.447 Sum_probs=24.6
Q ss_pred ceEEEEccCCCcHHHHHHHHH--HH--hCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLA--RY--VNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA--~~--l~~pfv~v~~ 363 (684)
..+.|.||+|+|||+|++.++ .. .+...+.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 678899999999999999998 33 2344444444
No 116
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.76 E-value=0.00075 Score=64.17 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+|||++|+.+++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 6789999999999999999999998776543
No 117
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.75 E-value=0.00068 Score=64.28 Aligned_cols=30 Identities=43% Similarity=0.630 Sum_probs=26.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..++|+|+||+|||++++.+++.++.+++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 689999999999999999999999876653
No 118
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.67 E-value=0.0012 Score=61.87 Aligned_cols=29 Identities=41% Similarity=0.819 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..+.|+||+|+||||+++.+|+.++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 57899999999999999999999986554
No 119
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.66 E-value=0.0012 Score=63.91 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+|||++|+.|++.++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5799999999999999999999998876544
No 120
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.001 Score=63.09 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..++|.|+||+|||++|+.+++.++.+++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 67899999999999999999999987654
No 121
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.60 E-value=0.0063 Score=61.04 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=27.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s 364 (684)
..++++||+|+|||.+|.+++..++.+.+.+..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589999999999999999988887666666544
No 122
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.60 E-value=0.00092 Score=64.08 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH-hCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY-VNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~-l~~pfv~ 360 (684)
..++|+|+||+|||++++.+|+. ++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 67999999999999999999999 6765543
No 123
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.58 E-value=0.0011 Score=63.23 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+|||++|+.+|+.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5789999999999999999999998766543
No 124
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.56 E-value=0.0013 Score=66.78 Aligned_cols=32 Identities=41% Similarity=0.467 Sum_probs=28.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
.++|+||||+|||++|+.||+.++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999988876665
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.54 E-value=0.0013 Score=62.68 Aligned_cols=36 Identities=39% Similarity=0.522 Sum_probs=30.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
..++|.||||+||||+++.|++..+.+.+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 578899999999999999999987777777776543
No 126
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.52 E-value=0.0015 Score=63.12 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=26.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..++|.|++|+||||+|+.|++.++.+++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 579999999999999999999999877654
No 127
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.51 E-value=0.0012 Score=61.79 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..++|.|+||+|||++|+.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 468999999999999999999999877654
No 128
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.50 E-value=0.0062 Score=59.02 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
..++|+||||+|||++++.++..+ +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 578899999999999999998654 445555553
No 129
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.50 E-value=0.0013 Score=64.57 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 6899999999999999999999998766543
No 130
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.49 E-value=0.0013 Score=60.76 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=25.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..++|.||||+|||++|+.+ +.++.+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 36889999999999999999 888877654
No 131
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.46 E-value=0.017 Score=58.09 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~ 362 (684)
.-++++||+|+|||+++..++..+ +...+.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 677889999999999998887665 44555553
No 132
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.46 E-value=0.0013 Score=62.87 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..++|.|+||+|||++|+.+++.++.+++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 57899999999999999999999986554
No 133
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.44 E-value=0.0016 Score=60.59 Aligned_cols=31 Identities=39% Similarity=0.596 Sum_probs=27.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
.++|.|+||+|||++|+.+++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5789999999999999999999998876433
No 134
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.42 E-value=0.0019 Score=61.18 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..++|.|+||+||||+|+.+++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 57899999999999999999999886554
No 135
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.41 E-value=0.0016 Score=63.54 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=26.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
.++|+||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998776544
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.41 E-value=0.0015 Score=61.52 Aligned_cols=29 Identities=41% Similarity=0.505 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..++|.|+||+|||++|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 57899999999999999999999998876
No 137
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.39 E-value=0.0016 Score=61.55 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+|||++|+.+++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5789999999999999999999998665543
No 138
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.38 E-value=0.016 Score=55.88 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=28.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~ 365 (684)
..++|+||||+|||++++.++...+.+.+.++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 57889999999999999999885566677777654
No 139
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.38 E-value=0.0064 Score=65.33 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=45.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc------c------cc--ccchHHHHHHHHhhcchhhHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA------G------YV--GEDVESILYKLLTVSDYNVAA 393 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~------g------yv--G~~~~~~l~~l~~~a~~~v~~ 393 (684)
..++|+||||+|||+||..++..+ +.+.+.++....... + ++ ....+..+.. ....+..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~----~~~l~~~ 137 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI----VDELVRS 137 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH----HHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH----HHHHhhh
Confidence 578899999999999999998765 556777776542110 0 00 1111222111 1111222
Q ss_pred hcCCEEEEccccccch
Q 005667 394 AQQGIVYIDEVDKITK 409 (684)
Q Consensus 394 a~~gVLfIDEIDkL~~ 409 (684)
....+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 4567999999999876
No 140
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.38 E-value=0.0018 Score=63.09 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=26.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
.++|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998776544
No 141
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.34 E-value=0.0061 Score=69.40 Aligned_cols=89 Identities=20% Similarity=0.329 Sum_probs=49.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---cccccchHHHHHHHHhhcc--h---hhHhhcCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSD--Y---NVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~---gyvG~~~~~~l~~l~~~a~--~---~v~~a~~gVL 399 (684)
..+++.||||||||+++.+++..+ +.+++.+..+.-... ...|.. ...+..++...+ . ........+|
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~-a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRT-ASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSC-EEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhccc-HHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 688999999999999999998765 444444433221100 000000 001112221110 0 0001134699
Q ss_pred EEccccccchhccccccCCCCchHHHHHHHHHHHh
Q 005667 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 400 fIDEIDkL~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+|||+..+... ....|++.+.
T Consensus 284 IIDEasml~~~--------------~~~~Ll~~~~ 304 (574)
T 3e1s_A 284 IVDEVSMMGDA--------------LMLSLLAAVP 304 (574)
T ss_dssp EECCGGGCCHH--------------HHHHHHTTSC
T ss_pred EEcCccCCCHH--------------HHHHHHHhCc
Confidence 99999998766 7777777664
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.33 E-value=0.0021 Score=60.73 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..++|.|+||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999886
No 143
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.32 E-value=0.0019 Score=60.51 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH-HhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR-YVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~-~l~ 355 (684)
..++|.|+||+|||++|+.+++ .++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 5789999999999999999998 444
No 144
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.32 E-value=0.0021 Score=60.45 Aligned_cols=34 Identities=35% Similarity=0.541 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
..++|+||+|+|||++++.+++.++..+ ++...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 5788999999999999999999887554 454443
No 145
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.31 E-value=0.0019 Score=64.20 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+|||++|+.||+.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 6799999999999999999999998766543
No 146
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.30 E-value=0.0018 Score=63.98 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=27.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+|||++|+.||+.++.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 6799999999999999999999998766543
No 147
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.28 E-value=0.0074 Score=61.25 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=30.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH---hCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~---l~~pfv~v~~s~l 366 (684)
..++|.|+||+|||++|+.+++. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 57899999999999999999998 6777776665544
No 148
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.27 E-value=0.02 Score=63.02 Aligned_cols=36 Identities=33% Similarity=0.346 Sum_probs=28.6
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
++..++++||+|+||||++..+|..+ +.....+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 35788999999999999999998777 4555555544
No 149
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.25 E-value=0.0093 Score=63.72 Aligned_cols=80 Identities=25% Similarity=0.261 Sum_probs=45.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---cccccchHH-------HHHHHHhhcchhhHhhcC
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVES-------ILYKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~---gyvG~~~~~-------~l~~l~~~a~~~v~~a~~ 396 (684)
...++|+||||+|||+||..++..+ +.+.+.++...-... ...|.+... .+.+++......+.....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 3678899999999999999997554 456666765432110 001111000 011111111111223357
Q ss_pred CEEEEccccccch
Q 005667 397 GIVYIDEVDKITK 409 (684)
Q Consensus 397 gVLfIDEIDkL~~ 409 (684)
.+|+||++..+..
T Consensus 141 ~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 141 DIIVIDSVAALVP 153 (349)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcChHhhcc
Confidence 8999999999974
No 150
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.24 E-value=0.0022 Score=61.85 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+|||++|+.|++.++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 5789999999999999999999998765543
No 151
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.0025 Score=64.38 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=31.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~ 367 (684)
+..++|.|+||+|||++|+.|++.++.+++.++...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 36899999999999999999999997666667776553
No 152
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.21 E-value=0.0023 Score=62.96 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+|||++|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5789999999999999999999998776544
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.21 E-value=0.0023 Score=64.46 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.||||+||||+|+.|++.++.+++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 6899999999999999999999997665543
No 154
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.20 E-value=0.0034 Score=60.79 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=28.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
+..+.|.||+|+|||++++.|++.++.. .++...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 3678899999999999999999998654 4455443
No 155
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.20 E-value=0.026 Score=57.07 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
.++++.|+||||||++|-.+|..+ +...+.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 689999999999999999888776 555555554
No 156
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.19 E-value=0.0065 Score=59.66 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH--h-------CCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY--V-------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~--l-------~~pfv~v~~s~ 365 (684)
..++|+||||+|||++++.++.. + +...+.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 67889999999999999999884 2 34566776654
No 157
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.19 E-value=0.0016 Score=64.05 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..++|.|+||+|||++|+.||+.++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 57999999999999999999999986554
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.15 E-value=0.0049 Score=58.33 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=31.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
..+.|+|++|+|||++++.+++.+ +.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 678899999999999999999988 888888876544
No 159
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.12 E-value=0.0028 Score=61.95 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
.++|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998776544
No 160
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.09 E-value=0.0048 Score=58.38 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=27.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005667 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~ 362 (684)
.++|.|++|+||||+|+.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 78877665
No 161
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.08 E-value=0.0038 Score=61.83 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=27.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
.++|.||||+||+|.|+.||+.++.+. ++..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 478999999999999999999997654 555444
No 162
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.06 E-value=0.0039 Score=64.66 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
..++|.||||+||||+|+.+++.+...++.+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 688999999999999999999988555667776444
No 163
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.02 E-value=0.0042 Score=62.20 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
+.++|.||||+||+|.|+.|++.++.+ .++..++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdl 63 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDL 63 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHH
Confidence 678899999999999999999999754 4455443
No 164
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.00 E-value=0.0042 Score=59.28 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=25.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
.++|.|++|+||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5789999999999999999999987654
No 165
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.00 E-value=0.0038 Score=66.26 Aligned_cols=34 Identities=41% Similarity=0.596 Sum_probs=30.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s 364 (684)
..++|+||+|+|||++|+.||+.++.+++..|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 5789999999999999999999999888777654
No 166
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.99 E-value=0.0047 Score=60.36 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..+.|.||+|+||||+++.+++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 47889999999999999999999886554
No 167
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.98 E-value=0.0042 Score=67.29 Aligned_cols=61 Identities=25% Similarity=0.238 Sum_probs=40.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccccccchHHHHHHHHhhcchhhHhhcCCEEEEccccccch
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l~~~gyvG~~~~~~l~~l~~~a~~~v~~a~~gVLfIDEIDkL~~ 409 (684)
..++|+||||+|||+++++++..++..++.++... . . ... .+... -+..++++||++.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~---~-----~-~~~---~lg~~------~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL---D-----R-LNF---ELGVA------IDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT---T-----T-HHH---HHGGG------TTCSCEEETTCCCSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc---h-----h-HHH---HHHHh------cchhHHHHHHHHHHHH
Confidence 68899999999999999999998876554322211 1 0 010 11111 1346789999998865
No 168
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.90 E-value=0.0057 Score=59.20 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=28.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
..+.|.||+|+|||+++++|++.+ +...+.++...+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 678899999999999999999988 444345665544
No 169
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.89 E-value=0.0031 Score=59.51 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=22.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.++|.|+||+||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999885
No 170
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.83 E-value=0.0056 Score=58.65 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-~~pfv~v~ 362 (684)
..++|.|++|+||||+++.+++.+ +.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 578999999999999999999998 46676654
No 171
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.83 E-value=0.004 Score=60.04 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=25.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
.+.|+|++|+|||++++.|++ ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 876665433
No 172
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.82 E-value=0.0072 Score=57.47 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=26.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005667 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~ 362 (684)
-+.|.|++|+||||+++.+++.+ +.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 36899999999999999999998 88776544
No 173
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.79 E-value=0.0048 Score=58.96 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=25.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..+.|.|++|+|||++++.|++. +.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 67899999999999999999998 766653
No 174
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.75 E-value=0.0061 Score=60.26 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
.++|.|+||+||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 47899999999999999999999865543
No 175
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.70 E-value=0.0087 Score=57.39 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=27.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
.+.|.|++|+|||++|+.+|+.++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999997775433
No 176
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.69 E-value=0.02 Score=61.47 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+++.||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 678999999999999999998876
No 177
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.69 E-value=0.034 Score=61.44 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=30.1
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
++..++++|++|+||||++..+|..+ +.....+++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 35789999999999999999998877 455666665543
No 178
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.68 E-value=0.021 Score=73.29 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=49.4
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---cccccch----------HHHHHHHHhhcchhhH
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDV----------ESILYKLLTVSDYNVA 392 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~---gyvG~~~----------~~~l~~l~~~a~~~v~ 392 (684)
+..+++|+||||||||+||.+++... +.+.+.++..+..+. ...|.+. ......+.. ....
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~---~l~~ 1156 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---ALAR 1156 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH---HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHH---HHHH
Confidence 45889999999999999999986544 667777887765321 1111110 001111111 1112
Q ss_pred hhcCCEEEEccccccchhc
Q 005667 393 AAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 393 ~a~~gVLfIDEIDkL~~~r 411 (684)
...+.+|+|||+..+.+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHH
T ss_pred hCCCCEEEECCcccccccc
Confidence 3457899999999996653
No 179
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.66 E-value=0.0044 Score=66.19 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=29.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s 364 (684)
..++|.||+|+|||+||..||+.++.+++..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4788999999999999999999998877766654
No 180
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.65 E-value=0.0036 Score=60.44 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..++|.|+||+||||+|+.+++.++.+.+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 6789999999999999999999886544333
No 181
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.64 E-value=0.032 Score=59.75 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=46.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccc---ccccc----------hHHHHHHHHhhcchhhHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGED----------VESILYKLLTVSDYNVAA 393 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~g---yvG~~----------~~~~l~~l~~~a~~~v~~ 393 (684)
...++|+|+||+|||++|..++..+ +.+.+.++...-.... -.|.+ ....+..++. ..+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~---~l~~~ 139 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---ALARS 139 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH---HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHH---HHHhc
Confidence 3678899999999999999987654 5577777764321100 00110 0111111111 11223
Q ss_pred hcCCEEEEccccccch
Q 005667 394 AQQGIVYIDEVDKITK 409 (684)
Q Consensus 394 a~~gVLfIDEIDkL~~ 409 (684)
....+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 4567999999999975
No 182
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.61 E-value=0.007 Score=58.06 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
..++|.|+||+||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999998763
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.58 E-value=0.0053 Score=59.35 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=24.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..+.|+||+|+||||+++.+++ ++.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3678999999999999999998 7777653
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.57 E-value=0.0087 Score=59.83 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=25.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
..++|.||+|+||||+++.|++.++...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 6899999999999999999999987643
No 185
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.52 E-value=0.016 Score=61.54 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=44.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccccccc---ccccc-----------chHHH-HHHHHhhcch
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQA---GYVGE-----------DVESI-LYKLLTVSDY 389 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l-----~~pfv~v~~s~l~~~---gyvG~-----------~~~~~-l~~l~~~a~~ 389 (684)
+..++++||||+|||+||-.++..+ +...+.++...-..+ .-.|. ..+.. +. +.....
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~-i~~~l~- 105 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRID-MVNQLD- 105 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHH-HHHHHH-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHH-HHHHHH-
Confidence 3468899999999999987774433 456777776532110 00111 11222 11 111100
Q ss_pred hhHhhcCCEEEEccccccch
Q 005667 390 NVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 390 ~v~~a~~gVLfIDEIDkL~~ 409 (684)
.+....+.+|+||-|..+.+
T Consensus 106 ~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCTTCCEEEEEECSTTCBC
T ss_pred HhhccCceEEEEeccccccc
Confidence 02234678999999999975
No 186
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.52 E-value=0.0081 Score=61.29 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..+.|+|++|+|||++++.||+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 6899999999999999999999998876543
No 187
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.47 E-value=0.0045 Score=59.74 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
..++|.|++|+||||+|+.+++.++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999987543
No 188
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.40 E-value=0.011 Score=59.98 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..+.|.||||+|||++|+.||+.++.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 57899999999999999999999986653
No 189
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.36 E-value=0.017 Score=54.91 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=28.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~ 365 (684)
+..++|.|++|+|||++++.+++.++ .++..++...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 36788999999999999999998873 3455555433
No 190
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.35 E-value=0.036 Score=58.57 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=42.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEeccc-ccc------cccc---ccchHHHHHHHHhhcchhhHhhcCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATT-LTQ------AGYV---GEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~--pfv~v~~s~-l~~------~gyv---G~~~~~~l~~l~~~a~~~v~~a~~gV 398 (684)
..+++.||+|+||||++++++..+.. ..+.++... +.. .+++ |......+...+. ..+.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~--------~~p~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLR--------MRPDR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTT--------SCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhh--------hCCCE
Confidence 68999999999999999999988742 355555432 110 1122 2332222222222 35679
Q ss_pred EEEccccc
Q 005667 399 VYIDEVDK 406 (684)
Q Consensus 399 LfIDEIDk 406 (684)
|++||+-.
T Consensus 244 lildE~~~ 251 (330)
T 2pt7_A 244 IILGELRS 251 (330)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 99999765
No 191
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.34 E-value=0.019 Score=72.72 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=49.3
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---ccccccch-------HHHHHHHHhhcchhhHhhc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDV-------ESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~---~gyvG~~~-------~~~l~~l~~~a~~~v~~a~ 395 (684)
+...++|+||||+|||+||..+|..+ +.+++.++...... +...|.+. ...+..++......+....
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~ 810 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 810 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccC
Confidence 34789999999999999999997665 44677777654321 00111000 0011222222222233456
Q ss_pred CCEEEEccccccch
Q 005667 396 QGIVYIDEVDKITK 409 (684)
Q Consensus 396 ~gVLfIDEIDkL~~ 409 (684)
..+|+||++..+.+
T Consensus 811 ~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 811 VDVIVVDSVAALTP 824 (1706)
T ss_dssp CSEEEESCSTTCCC
T ss_pred CCEEEEechhhhcc
Confidence 78999999999984
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.31 E-value=0.023 Score=59.58 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=28.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---------~~pfv~v~~s~ 365 (684)
..++|+||||+|||++|..++..+ +.+.+.++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 678899999999999999998765 34567777654
No 193
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.30 E-value=0.0095 Score=57.82 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..++|+||||+|||++++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 6889999999999999999999874
No 194
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.29 E-value=0.0097 Score=62.92 Aligned_cols=36 Identities=42% Similarity=0.642 Sum_probs=30.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
..+++.||+|+|||+||..+|+.++..++..|.-.+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 578899999999999999999999877766665433
No 195
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.28 E-value=0.0088 Score=58.52 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..+.|+|++|+||||+++.+++.++.+++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 467799999999999999999998877654
No 196
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.23 E-value=0.0078 Score=64.73 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
.+++|+|++|+|||+++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999999877744
No 197
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.18 E-value=0.014 Score=58.97 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=25.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..+.|.||+|+||||+++.||+.++.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 57889999999999999999999986543
No 198
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.13 E-value=0.018 Score=57.94 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=29.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC--------EEEEeccccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP--------FVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p--------fv~v~~s~l~ 367 (684)
..|.|.|++|+|||++|+.|++.++.+ .+.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 578899999999999999999998866 3356665554
No 199
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.13 E-value=0.011 Score=57.84 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=25.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v 361 (684)
..+.|.|++|+|||++++.|++ ++.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5788999999999999999998 77665443
No 200
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.13 E-value=0.01 Score=57.73 Aligned_cols=30 Identities=37% Similarity=0.535 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..+.|.|++|+|||++++.+++.++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 578999999999999999999999876653
No 201
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.10 E-value=0.016 Score=57.59 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..+.|.|++|+|||++++.+++.++.+++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 67899999999999999999999987654
No 202
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.08 E-value=0.028 Score=59.92 Aligned_cols=35 Identities=37% Similarity=0.410 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---------CCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN---------VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~---------~pfv~v~~s~ 365 (684)
..+.|+||||+|||+|++.++..+. ...+.++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 5677999999999999999998762 3446777644
No 203
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.07 E-value=0.013 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+|||+|++.|++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999998764
No 204
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.05 E-value=0.026 Score=60.69 Aligned_cols=76 Identities=22% Similarity=0.259 Sum_probs=45.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccc---cccc-----------chHHHHHHHHhhcchhhH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGE-----------DVESILYKLLTVSDYNVA 392 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l~~~g---yvG~-----------~~~~~l~~l~~~a~~~v~ 392 (684)
...++|+||||+|||++|..++..+ +.+.+.++...-.... ..|. ..+..+. .+. ..+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~-~l~---~l~~ 149 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALE-IME---LLVR 149 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH-HHH---HHHT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHH-HHH---HHHh
Confidence 3678899999999999999887654 5577777765321110 0111 1111111 111 1122
Q ss_pred hhcCCEEEEccccccch
Q 005667 393 AAQQGIVYIDEVDKITK 409 (684)
Q Consensus 393 ~a~~gVLfIDEIDkL~~ 409 (684)
.....+|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 23568999999999974
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.00 E-value=0.0084 Score=58.08 Aligned_cols=34 Identities=35% Similarity=0.406 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-~~pfv~v~~s~l 366 (684)
..+.|.|++|+|||++|+.|++.+ +.+ .++...+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~--~i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCS--VISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEE--EEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcE--EEeCCcc
Confidence 577899999999999999999877 443 3444333
No 206
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.97 E-value=0.012 Score=56.23 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.||+|+||||+++.|++.+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999999887
No 207
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.91 E-value=0.013 Score=62.04 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s 364 (684)
..+++.||+|+|||+||..+|+.++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4678999999999999999999997666555543
No 208
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.88 E-value=0.0093 Score=61.12 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-~~pfv 359 (684)
..++|.|+||+|||++|+.+++.+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 578999999999999999999864 44333
No 209
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.88 E-value=0.016 Score=55.51 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 567899999999999999999886
No 210
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.86 E-value=0.01 Score=59.10 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=31.2
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 326 ~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
+......++|.||||+|||++|..+++... +++..|...+
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 445568899999999999999999998876 5655554433
No 211
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.82 E-value=0.014 Score=56.91 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+..+.|.||+|+|||++++.|++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 36788999999999999999998874
No 212
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.82 E-value=0.068 Score=58.21 Aligned_cols=35 Identities=29% Similarity=0.251 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---------CCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN---------VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~---------~pfv~v~~s~ 365 (684)
..++|+||||+|||+|++.++-... ...++++...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 6788999999999999997764332 2366676654
No 213
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.79 E-value=0.019 Score=54.63 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=25.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~ 365 (684)
..++|.||+|+||||+++.|++..+. .+.++...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 46789999999999999999986543 24445433
No 214
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.79 E-value=0.021 Score=55.69 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=29.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~----~pfv~v~~s~l 366 (684)
..++|.|++|+|||++++.+++.++ .+++.++...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 6788999999999999999998774 45777765443
No 215
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.78 E-value=0.014 Score=62.44 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
..++|.||+|+|||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 478899999999999999999999865554443
No 216
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.65 E-value=0.017 Score=63.11 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=27.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~ 363 (684)
..++|.||+|+|||+||..||+.++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 578899999999999999999999876655444
No 217
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.63 E-value=0.064 Score=61.30 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 688999999999999988776554
No 218
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.60 E-value=0.015 Score=56.24 Aligned_cols=25 Identities=48% Similarity=0.505 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999886
No 219
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.51 E-value=0.14 Score=50.44 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=25.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEE
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v 361 (684)
...+++++++|.|||++|-++|-.. +.+...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3789999999999999999987655 5555555
No 220
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.49 E-value=0.02 Score=55.78 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+|||||++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6778999999999999999999884
No 221
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.49 E-value=0.02 Score=54.69 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999998873
No 222
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.46 E-value=0.049 Score=57.68 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---------~~pfv~v~~s~ 365 (684)
..++|+||||+|||++|..+|... +.+.+.++...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 577899999999999999998763 34566777654
No 223
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.44 E-value=0.029 Score=54.96 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
..|.|.|++|||||++++.+|+.++.+|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 47889999999999999999999999987
No 224
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.42 E-value=0.15 Score=50.37 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.6
Q ss_pred ceEEEEccCCCcHH-HHHHHHHHHh--CCCEEEEec
Q 005667 331 SNILLMGPTGSGKT-LLAKTLARYV--NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT-~LAraIA~~l--~~pfv~v~~ 363 (684)
.-.+++||.|+||| .|.+++.++. +...+.+..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 56779999999999 8889987655 556666654
No 225
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.33 E-value=0.023 Score=55.21 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|+||+|+|||||++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6789999999999999999998763
No 226
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.33 E-value=0.02 Score=58.96 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=24.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
+..|.|+|++|+||||+|+.++ .++.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 3578899999999999999999 56765543
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.27 E-value=0.029 Score=54.80 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pf 358 (684)
+.++|.||+|+|||+|++.|.+.....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4689999999999999999987764333
No 228
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.16 E-value=0.017 Score=62.88 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=27.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
+.-++|+|+||+|||++|+.+++.++..+ ++...+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 46788999999999999999999887544 444433
No 229
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.14 E-value=0.13 Score=50.21 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v 361 (684)
.-.+++||.|+|||+.+-.++..+ +...+.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999888777665 4444444
No 230
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.07 E-value=0.054 Score=52.44 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
..+.|.|++|+|||++++.++..+ +.+++..+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 578899999999999999999876 455555543
No 231
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.03 E-value=0.067 Score=58.80 Aligned_cols=35 Identities=43% Similarity=0.595 Sum_probs=28.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
+..++++|++|+|||+++..+|..+ +.....+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4689999999999999999998876 3556666654
No 232
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.92 E-value=0.058 Score=56.15 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...++|+||||+|||++|..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367889999999999999999865
No 233
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=93.86 E-value=0.056 Score=51.63 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=19.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.++++.+|+|+|||.++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999998777654
No 234
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.85 E-value=0.036 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+|||||+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5677999999999999999999874
No 235
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.82 E-value=0.037 Score=55.31 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=23.6
Q ss_pred cccccc-ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 325 ~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
.+.+++ ..+-|.||+|+||||+++.|+..++.
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 344443 35679999999999999999998764
No 236
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.80 E-value=0.036 Score=53.70 Aligned_cols=24 Identities=50% Similarity=0.540 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|+||+|+|||+|++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999855
No 237
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.74 E-value=0.064 Score=52.48 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
..++|+||||+|||++|..++... +.+.+.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 678899999999999998886543 4566666543
No 238
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.73 E-value=0.073 Score=59.81 Aligned_cols=37 Identities=32% Similarity=0.584 Sum_probs=28.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~l 366 (684)
+..|+|+|.||+|||++|+.||+.++ .+...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 46789999999999999999999884 44445555443
No 239
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.68 E-value=0.021 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
-+.|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999885
No 240
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.65 E-value=0.16 Score=56.84 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHH--HHHHh--CCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKT--LARYV--NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAra--IA~~l--~~pfv~v~~s~ 365 (684)
..++|.||+|+|||+|++. ++... +..-+.++..+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 6788999999999999999 45554 34456666543
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.60 E-value=0.055 Score=53.36 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=23.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
...+.|.||+|+|||+|++.|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 36788999999999999999998764
No 242
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.58 E-value=0.04 Score=54.35 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=22.3
Q ss_pred cccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 325 ~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++.+++ ..+.|+||+|+|||+|++.|+...
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344433 567799999999999999999877
No 243
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.57 E-value=0.2 Score=55.03 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~ 363 (684)
.-++|.|+||+|||++|..+|..+ +.+.+.++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 578899999999999999987654 446666664
No 244
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.53 E-value=0.053 Score=62.42 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=31.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s~l 366 (684)
..|+|+|.||+||||+|++|++.+ +.+++.++...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 679999999999999999999999 889988875443
No 245
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.49 E-value=0.38 Score=53.93 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=27.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
+..++|+|++|+|||+++..||..+ +.....+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4789999999999999999998776 556666665
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.30 E-value=0.17 Score=53.32 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=28.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
+..++++|++|+|||+++..+|..+ +.....+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4678899999999999999998776 4556656553
No 247
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.29 E-value=0.053 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.||.|+|||+|+++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999987
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.23 E-value=0.045 Score=51.72 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=17.7
Q ss_pred ceEEEEccCCCcHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraI 350 (684)
.-+.|+||+|+||||+++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 56779999999999999964
No 249
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.06 E-value=0.056 Score=54.63 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=25.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
.+-|.|+||+|||++|+.|++.++.+.+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 55689999999999999999999877653
No 250
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.01 E-value=0.068 Score=50.31 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=25.1
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 326 VELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 326 ~~~p~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+...+.-.+|+||+|+|||+++++|.-.++
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 444456778999999999999999998875
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.95 E-value=0.06 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.-+.|.||+|+|||||.++|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5778999999999999999998874
No 252
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.93 E-value=0.058 Score=55.10 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|+||+|+||||+.++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 678899999999999999998876
No 253
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.91 E-value=0.066 Score=53.56 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~ 360 (684)
..+.+.|++|||||++|+.||+.++.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999988753
No 254
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.87 E-value=0.064 Score=53.52 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.-++|.|+||+||||+++.+++.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999986
No 255
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.86 E-value=0.37 Score=48.14 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=23.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~ 362 (684)
.-.+++||.|+|||+.+-.++..+ +...+.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 455689999999999887776554 55555554
No 256
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.76 E-value=0.18 Score=56.09 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 578999999999999999887654
No 257
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.75 E-value=0.14 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+||||+|+.|++.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5788999999999999999998884
No 258
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.73 E-value=0.041 Score=54.21 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=15.4
Q ss_pred ceEEEEccCCCcHHHHHHHHH-HHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLA-RYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA-~~l~ 355 (684)
..+.|+||+|+|||++++.|+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 467799999999999999999 8763
No 259
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.27 E-value=0.15 Score=49.90 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=24.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH----hCCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY----VNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~----l~~pfv~v~~ 363 (684)
.-+++.|+||+|||++|..+|.. .+.+.+.++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 67889999999999999877533 2556666554
No 260
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.25 E-value=0.079 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|+||+|+|||+|++.|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 577899999999999999999988
No 261
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.16 E-value=0.51 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=17.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
.++++.+|+|+|||..+-..+-
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHH
Confidence 5799999999999987765543
No 262
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.14 E-value=0.08 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|+||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 367899999999999999999876
No 263
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.13 E-value=0.064 Score=55.59 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=25.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~l 366 (684)
..+.|.||+|+||||+|+.+++.++ ..+..+++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4688999999999999999998775 34555666554
No 264
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.11 E-value=0.36 Score=58.18 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=34.7
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
++|.++.++.|...+... . ...+.+.|+|+.|+|||+||+.++..
T Consensus 126 ~vgR~~~~~~l~~~l~~~-------~-----------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL-------N-----------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT-------T-----------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eccHHHHHHHHHHHHhhc-------c-----------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 699999999998887410 0 01267889999999999999988654
No 265
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.11 E-value=0.18 Score=53.39 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
..+.|+|+||+|||+++..++..+ +.....+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 578999999999999999998776 444444443
No 266
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.10 E-value=0.084 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+|||||++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 5777999999999999999998873
No 267
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.09 E-value=0.087 Score=55.14 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=23.4
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++..+.|+||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34688899999999999999999887
No 268
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.08 E-value=0.085 Score=53.97 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.-++|.||||+|||+|++.+|..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 577799999999999999998776
No 269
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.08 E-value=0.086 Score=53.61 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=21.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
...++|+||+|+|||+|++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999998654
No 270
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.99 E-value=0.23 Score=56.89 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHH-HHHHHh--CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAK-TLARYV--NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAr-aIA~~l--~~pfv~v~~ 363 (684)
.-.|+.||||||||+++- .|+..+ +.+.+.+..
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 367899999999997554 444433 344444443
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.97 E-value=0.14 Score=53.68 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=27.8
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
++..++|+||+|+||||++..+|..+ +.....+++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 34688899999999999999999876 4455555543
No 272
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.86 E-value=0.14 Score=57.41 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=34.0
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
++|.+..++.|..++... . ...+.++++||+|+|||+||+.+++
T Consensus 126 ~vGR~~~l~~L~~~L~~~------------------~------------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKL------------------K------------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHHTTS------------------T------------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHHhcc------------------c------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 699999999998877310 0 0126789999999999999998853
No 273
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.86 E-value=0.27 Score=54.01 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=28.7
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
++..+++.|++|+|||+++..+|..+ +.....+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 55788899999999999999999877 4455556653
No 274
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.72 E-value=0.1 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+..+.|.||+|+||||+++.||..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999887
No 275
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.70 E-value=0.11 Score=58.99 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=30.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~----~pfv~v~~s~l 366 (684)
..++|.|+||+|||++|++|++.++ .+++.++...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 5789999999999999999999985 67777775543
No 276
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.52 E-value=0.18 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999875
No 277
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.51 E-value=0.1 Score=55.99 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|+||+|+||||++++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999998876
No 278
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.46 E-value=1 Score=51.30 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=27.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-------CCCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV-------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l-------~~pfv~v~~s~ 365 (684)
.|+|+.|.||+|||.+.+.+...+ ...|+.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 799999999999999999875443 13488888763
No 279
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.35 E-value=0.12 Score=50.36 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=27.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005667 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~ 365 (684)
+|++|++|+|||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999977 77777776643
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.30 E-value=0.12 Score=54.83 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.3
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++..+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35788899999999999999999877
No 281
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.22 E-value=0.12 Score=53.81 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=28.6
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEeccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATT 365 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~s~ 365 (684)
++..++|+||+|+||||++..+|..+ +.....+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45789999999999999999998766 33555555543
No 282
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.17 E-value=0.13 Score=54.50 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5778999999999999999999875
No 283
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.01 E-value=0.073 Score=58.70 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=23.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+..|+|+|.||+|||++++.+++.++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999999874
No 284
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.00 E-value=0.13 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999999984
No 285
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.90 E-value=0.11 Score=52.17 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=25.5
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34455554 4667999999999999999997764
No 286
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.89 E-value=0.88 Score=52.35 Aligned_cols=19 Identities=58% Similarity=0.798 Sum_probs=17.0
Q ss_pred ceEEEEccCCCcHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAra 349 (684)
.++++.+|+|+|||+.+..
T Consensus 41 ~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp SCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHH
Confidence 6899999999999998843
No 287
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.84 E-value=0.11 Score=51.74 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=25.2
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~~-~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+..+.+++. .+.|.||+|+|||||.+.|+..+.
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334455444 566999999999999999997763
No 288
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.69 E-value=0.066 Score=53.96 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.-|+|.|++|+||||+++.|++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36788999999999999999999984
No 289
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.69 E-value=0.14 Score=54.92 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+..++|+||+|+||||+++.||..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4678899999999999999999887
No 290
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.63 E-value=0.14 Score=49.85 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=25.7
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 326 ~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
++.....+||.|++|+|||++|.++.+. +..++
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 3444589999999999999999999874 34443
No 291
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.63 E-value=0.3 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|+||+|+|||+|++.|++.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 688999999999999999998865
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.62 E-value=0.11 Score=51.30 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+.|.||+|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57789999999999999999876
No 293
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.59 E-value=0.16 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
..+.|+||+|+|||||++.|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57889999999999999999998754
No 294
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.58 E-value=0.22 Score=55.84 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=34.1
Q ss_pred cChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005667 280 IGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 280 vGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
+|.+..++.|...+...- . ...+.+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-------~----------------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-------D----------------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-------T----------------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-------C----------------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999988874110 0 0126788999999999999999996
No 295
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.47 E-value=0.1 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.|+|++|+|||+|++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999998873
No 296
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.38 E-value=0.12 Score=58.62 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=28.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEecccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~----~pfv~v~~s~l 366 (684)
..+.|+|++|+|||||+++|++.+. ..+..++...+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 6788999999999999999999984 23444555443
No 297
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.38 E-value=0.13 Score=51.69 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=25.6
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++.++.+++ ..+.|.||+|+|||||.+.|+..+
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344455555 466799999999999999998765
No 298
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.37 E-value=0.14 Score=57.55 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=24.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
..++|.|.+|+|||++|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999974
No 299
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.36 E-value=0.17 Score=55.27 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..++++||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5789999999999999999999884
No 300
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.33 E-value=0.43 Score=52.71 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
.-.++.|+||||||++...++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 5678999999999999877764
No 301
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.30 E-value=0.15 Score=51.43 Aligned_cols=32 Identities=31% Similarity=0.605 Sum_probs=25.2
Q ss_pred cccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 324 ~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.++.+++..+.|.||+|+|||||.+.|+..+.
T Consensus 18 isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 18 VDFEMGRDYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECSSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eEEEECCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444445667999999999999999998763
No 302
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.29 E-value=0.18 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999998876
No 303
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.28 E-value=0.11 Score=55.32 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~--pfv~v~ 362 (684)
..++|.||+|+||||++++++..+.. ..+.++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 68999999999999999999987742 344444
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.22 E-value=0.16 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|.|++|+|||+|.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 578999999999999999998753
No 305
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.15 E-value=0.15 Score=48.39 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 578899999999999999998764
No 306
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.08 E-value=0.16 Score=52.08 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
-++.|.||+|+|||||.++|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999876
No 307
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.07 E-value=0.18 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999754
No 308
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.05 E-value=0.27 Score=47.36 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..++|.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6889999999999999999987763
No 309
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.97 E-value=0.18 Score=45.67 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998654
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.97 E-value=0.17 Score=51.16 Aligned_cols=30 Identities=40% Similarity=0.523 Sum_probs=23.8
Q ss_pred ccccccc-ceEEEEccCCCcHHHHHHHHHHH
Q 005667 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 324 ~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+.+++ ..+.|.||+|+|||||.+.|+..
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444544 46669999999999999999975
No 311
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.95 E-value=0.14 Score=52.16 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=25.4
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~~-~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++. .+.|.||+|+|||||.++|+..+.
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334555554 566999999999999999998764
No 312
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.94 E-value=0.12 Score=51.59 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=26.1
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
++..+.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 334455544 4666999999999999999998763
No 313
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.90 E-value=0.18 Score=48.45 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578899999999999999998765
No 314
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.87 E-value=0.19 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999754
No 315
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.85 E-value=0.18 Score=49.97 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.-+.|.|++|+|||++++.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999884
No 316
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.79 E-value=0.15 Score=51.29 Aligned_cols=34 Identities=32% Similarity=0.547 Sum_probs=26.1
Q ss_pred CCCccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+++.++.+++ ..+.|.||+|+|||||.+.|+..+
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344555555 466799999999999999998765
No 317
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.79 E-value=0.23 Score=45.58 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
...+++.|++|+|||+|..++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999864
No 318
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.76 E-value=0.2 Score=48.01 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|+|++|+|||+|..++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998754
No 319
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.75 E-value=0.15 Score=51.70 Aligned_cols=33 Identities=27% Similarity=0.632 Sum_probs=25.4
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33445544 4666999999999999999997763
No 320
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.74 E-value=0.12 Score=53.22 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=26.9
Q ss_pred CCCccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 321 ~~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+++.++.+++ ..+.|.||+|+|||||+++|+..+.
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3444555555 4567999999999999999998763
No 321
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.72 E-value=0.2 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988754
No 322
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.67 E-value=0.18 Score=51.53 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=24.3
Q ss_pred ccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 324 ~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.+++ ..+.|.||+|+|||||.+.|+...
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444544 466799999999999999999763
No 323
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.63 E-value=0.2 Score=45.26 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|.+++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 58899999999999999999764
No 324
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.62 E-value=0.16 Score=51.02 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=25.0
Q ss_pred ccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 324 ~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445544 4667999999999999999998763
No 325
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.62 E-value=0.16 Score=51.36 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=25.9
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
++.++.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334455555 4667999999999999999987763
No 326
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.61 E-value=0.13 Score=52.81 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=25.4
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+..+.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33445544 4667999999999999999998763
No 327
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.61 E-value=1 Score=46.79 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.3
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
.++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 589999999999998765443
No 328
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.60 E-value=0.15 Score=50.51 Aligned_cols=33 Identities=39% Similarity=0.628 Sum_probs=25.3
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+..+.+++ ..+.|.||+|+|||||.++|+..+.
T Consensus 27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33444444 4677999999999999999987763
No 329
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.59 E-value=0.13 Score=52.20 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=24.9
Q ss_pred ccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 324 ~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444444 4667999999999999999998763
No 330
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.56 E-value=0.18 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
...+++.|++|+|||+|...+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999874
No 331
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.55 E-value=0.2 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999754
No 332
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.47 E-value=0.18 Score=54.14 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=25.7
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++ .-+.|.||+|||||||.++||....
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34455555 4566999999999999999998763
No 333
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.45 E-value=0.17 Score=51.89 Aligned_cols=32 Identities=28% Similarity=0.661 Sum_probs=25.1
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+.++.+++ ..+.|.||+|+|||||+++|+..+
T Consensus 29 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 29 DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33455554 456699999999999999999876
No 334
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.41 E-value=0.14 Score=57.46 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~--~pfv~v~~s 364 (684)
.++++.||+|+||||++++++..+. ...+.+...
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 5799999999999999999998874 235555543
No 335
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.40 E-value=2.1 Score=53.23 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=29.2
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhCCC--EEEEec
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADA 363 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~~p--fv~v~~ 363 (684)
+.++.+++ ..+.++||+|+|||+|+++|.+.+... -+.+|.
T Consensus 436 ~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp EEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred ceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 33445554 567799999999999999999887432 344444
No 336
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.34 E-value=0.14 Score=52.89 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=25.0
Q ss_pred ccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 324 ~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
..+.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444444 4667999999999999999998763
No 337
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.30 E-value=0.17 Score=51.49 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=26.4
Q ss_pred CCCccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+++.++.+++ ..+.|.||+|+|||||.+.|+..+
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4444556655 466799999999999999998765
No 338
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.30 E-value=0.17 Score=51.76 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=24.9
Q ss_pred ccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 324 ~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.++.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3444444 4667999999999999999998763
No 339
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.28 E-value=0.14 Score=55.58 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=26.1
Q ss_pred CCCccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 321 ~~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+++.++.+++ .-+.|.||+|||||||.++|+...
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3444555555 466699999999999999999765
No 340
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.19 E-value=0.22 Score=47.20 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
...+++.|++|+|||+|.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999976
No 341
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.07 E-value=0.34 Score=50.47 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
.-++|.|+||+|||++|..+|... +.+.+.++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 578899999999999999997554 345555554
No 342
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.07 E-value=0.44 Score=49.35 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=27.7
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
++..+.++|++|+|||+++..+|..+ +.....+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 55788899999999999999998776 445555554
No 343
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.06 E-value=0.25 Score=46.28 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++++|++|+|||+|..++....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999997653
No 344
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.02 E-value=0.22 Score=55.77 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+..++|+||+|+||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3678899999999999999999877
No 345
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.99 E-value=0.21 Score=53.51 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=27.1
Q ss_pred CCCccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 321 VDDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 321 ~~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+++.++.+++ ..+.|.||+|+|||||.+.||....
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444556655 4566999999999999999998763
No 346
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.99 E-value=0.17 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=19.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.-+.|.|++|+||||+++.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999887
No 347
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.95 E-value=0.33 Score=55.47 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999877665443
No 348
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.94 E-value=0.19 Score=51.20 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=26.0
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
++.++.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334455555 4667999999999999999997763
No 349
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.89 E-value=0.19 Score=51.27 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=25.4
Q ss_pred Ccccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~~-~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++. .+.|.||+|+|||||.+.|+..+.
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 334555554 566999999999999999997763
No 350
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.86 E-value=0.25 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.4
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHH
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
+.-.++|.|++|+|||+|.+.+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4478999999999999999887654
No 351
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.80 E-value=0.22 Score=53.41 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=25.5
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++ ..+.|.||+|+|||||.+.||....
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 33445544 4566999999999999999998763
No 352
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.77 E-value=1 Score=54.04 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..++|+||.|+|||++.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999953
No 353
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.77 E-value=0.22 Score=53.45 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=25.8
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++ ..+.|.||+|+|||||.+.||....
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34455555 4566999999999999999998763
No 354
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.76 E-value=0.25 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
-.+++.|++|+|||+|.+++...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 689999999999999999997543
No 355
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.70 E-value=0.23 Score=53.83 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=25.6
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++ ..+.|.||+|+|||||.+.||....
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 34455554 4566999999999999999998763
No 356
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.70 E-value=0.24 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..++|.|++|+|||+|.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999975
No 357
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=88.70 E-value=0.38 Score=57.70 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=22.5
Q ss_pred ccccc-cceEEEEccCCCcHHHHHHHHHHH
Q 005667 325 TVELE-KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 325 ~~~~p-~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.+..+ ...++|+||.|+|||++.|.++..
T Consensus 667 sl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 667 DLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34443 356789999999999999998744
No 358
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.67 E-value=0.4 Score=47.68 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
.-+.|.|++|+|||++++.+++.+..+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 578899999999999999999999764
No 359
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.67 E-value=0.19 Score=47.16 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=19.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
-.++|.|++|+|||+|.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 360
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.66 E-value=0.24 Score=46.21 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.8
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHH
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
+.-.|++.|++|+|||+|+.++...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999754
No 361
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.65 E-value=0.2 Score=50.84 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=25.1
Q ss_pred ccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 324 ~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.++.+++ ..+.|.||+|+|||||.+.|+..+.
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445544 4667999999999999999998763
No 362
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.63 E-value=0.27 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..++|.|++|+|||+|.+.+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999975
No 363
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.62 E-value=0.4 Score=51.16 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=27.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
..|+++.||+|+|||++++.++..+ +..++.+|.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4799999999999999999987554 556666664
No 364
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.62 E-value=0.33 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.-.+++.|++|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999998753
No 365
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.58 E-value=0.23 Score=53.50 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=25.6
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++ ..+.|.||+|+|||||.+.||....
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34455554 4566999999999999999998763
No 366
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.58 E-value=0.23 Score=53.45 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=25.1
Q ss_pred ccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 324 DTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 324 ~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.++.+++ ..+.|.||+|+|||||.+.||....
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3445544 4667999999999999999998763
No 367
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.56 E-value=0.27 Score=44.33 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999753
No 368
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.53 E-value=0.25 Score=45.07 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..+++.|++|+|||+|.+++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5899999999999999998853
No 369
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.49 E-value=0.2 Score=53.57 Aligned_cols=33 Identities=30% Similarity=0.626 Sum_probs=25.8
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++ ..+.|.||+|+|||||.+.||....
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 34455555 4666999999999999999998763
No 370
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.49 E-value=0.26 Score=44.57 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999998743
No 371
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.48 E-value=0.2 Score=47.00 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=20.9
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHH
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
....+++.|++|+|||+|.+++...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999988543
No 372
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.47 E-value=0.31 Score=45.25 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=23.6
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 326 VELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 326 ~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
+...+.-.+|+||.|+|||++..+|.-.+
T Consensus 19 i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34445677899999999999999997655
No 373
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.42 E-value=0.28 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.-+.|.|++|+|||++++.+++.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999887
No 374
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.42 E-value=0.28 Score=44.54 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|.+++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 375
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=88.40 E-value=0.24 Score=49.25 Aligned_cols=31 Identities=39% Similarity=0.410 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~ 362 (684)
-.+-|+|..|||||++++.+++ ++.+++..|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4678999999999999999998 888776444
No 376
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.39 E-value=0.27 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998753
No 377
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.33 E-value=0.27 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999988654
No 378
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=88.28 E-value=1.8 Score=49.94 Aligned_cols=18 Identities=56% Similarity=0.732 Sum_probs=16.5
Q ss_pred ceEEEEccCCCcHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAr 348 (684)
.++++.||+|+|||+++.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 789999999999999884
No 379
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.18 E-value=0.28 Score=44.32 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999753
No 380
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.07 E-value=0.29 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..++|.|++|+|||+|..++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999753
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.01 E-value=0.3 Score=44.06 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHH
Q 005667 332 NILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.+++.|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999654
No 382
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.95 E-value=0.42 Score=49.71 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=28.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
+..+++.|++|+|||+++..+|..+ +.....+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5788899999999999999998776 5566666654
No 383
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.94 E-value=0.29 Score=44.26 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
-.+++.|++|+|||+|.+++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999875
No 384
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.93 E-value=0.3 Score=44.92 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...|++.|++|+|||+|.+++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 368999999999999999999754
No 385
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.89 E-value=0.32 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999765
No 386
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.89 E-value=0.29 Score=44.40 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.1
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
-.+++.|++|+|||+|.+.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 387
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.83 E-value=1 Score=52.87 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=17.8
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
..+++.||+|+|||+++..+.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999999766664
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.80 E-value=0.34 Score=43.96 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..+++.|++|+|||+|..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999965
No 389
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.73 E-value=0.18 Score=54.25 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=27.0
Q ss_pred CCCcccccccc-eEEEEccCCCcHHHHHHHHHHHhC
Q 005667 321 VDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 321 ~~~~~~~~p~~-~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+++.++.+++. .+.|.||+|+|||||.++|+....
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 44455666654 556999999999999999998763
No 390
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.72 E-value=0.26 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.||+|+|||||+|.|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 578899999999999999998876
No 391
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.67 E-value=0.31 Score=45.57 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...|++.|++|+|||+|..++...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998643
No 392
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.64 E-value=0.34 Score=48.49 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
.-+.|.|++|+|||++++.+++.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 67889999999999999999988743
No 393
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.59 E-value=0.31 Score=44.08 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.0
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
-.+++.|++|+|||+|.+++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 478999999999999999884
No 394
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.49 E-value=0.34 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999754
No 395
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.47 E-value=0.31 Score=46.52 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.8
Q ss_pred cceEEEEccCCCcHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA 351 (684)
...+++.|++|+|||+|.+++.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3679999999999999999885
No 396
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.46 E-value=0.33 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998743
No 397
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.44 E-value=0.31 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.-+.|.|++|+|||++++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999888
No 398
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.39 E-value=0.34 Score=44.74 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|..++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999999754
No 399
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.38 E-value=0.24 Score=50.66 Aligned_cols=31 Identities=29% Similarity=0.662 Sum_probs=24.7
Q ss_pred cccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 324 ~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.++.++...+.|.||+|+|||||.+.|+..+
T Consensus 24 vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 24 INLEVNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445553467799999999999999999876
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.34 E-value=0.21 Score=53.45 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=25.6
Q ss_pred Cccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 323 DDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 323 ~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
+.++.+++ ..+.|.||+|+|||||.+.||....
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34455555 4566999999999999999998763
No 401
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.34 E-value=0.36 Score=44.63 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.-.+++.|++|+|||+|..++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999998754
No 402
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.33 E-value=0.31 Score=44.57 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
..+++.|++|+|||+|.+++.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999999885
No 403
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.20 E-value=0.55 Score=51.29 Aligned_cols=33 Identities=27% Similarity=0.219 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~ 363 (684)
.-++|.|+||+|||++|..+|... +.+.+.++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 578899999999999999887654 446666665
No 404
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.17 E-value=0.34 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..++|.|+||+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999754
No 405
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.12 E-value=0.98 Score=47.62 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=24.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecc
Q 005667 332 NILLMGPTGSGKTLLAKTLARYV----NVPFVIADAT 364 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~s 364 (684)
++++..|+|+|||..+-.++... +.+.+.+-.+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 78999999999999988775544 4555555543
No 406
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.10 E-value=0.33 Score=44.47 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
-.+++.|++|+|||+|.+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 6899999999999999999864
No 407
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.06 E-value=0.35 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68899999999999999999764
No 408
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.04 E-value=0.64 Score=45.99 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV--NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l--~~pfv~v~~ 363 (684)
..+++.|.+|+|||+++..+|..+ +.....+++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 678899999999999999998776 445555554
No 409
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.98 E-value=0.19 Score=52.64 Aligned_cols=31 Identities=26% Similarity=0.620 Sum_probs=24.5
Q ss_pred cccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 325 ~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
.+.+++ ..+.|+||+|+|||||++.|+..+.
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 344444 5677999999999999999998763
No 410
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=86.95 E-value=0.33 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.3
Q ss_pred ccceEEEEccCCCcHHHHHHHHH
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA 351 (684)
+...|+|.|++|+|||+|...+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34789999999999999998874
No 411
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.94 E-value=0.4 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|..++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999999764
No 412
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.93 E-value=0.37 Score=45.13 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..++|+|++|+|||+|.+++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 413
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.89 E-value=0.37 Score=44.59 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 414
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.86 E-value=0.29 Score=50.80 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=25.8
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~~~~p~-~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
++..+.+++ ..+.|.||+|+|||||.+.|+..+
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344555555 466799999999999999998776
No 415
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.85 E-value=0.38 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 416
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=86.85 E-value=0.52 Score=53.24 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=28.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~---~pfv~v~~s~ 365 (684)
..++|+|++|+|||++|+.+++.++ .++..++...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 5788999999999999999998873 4566666543
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.83 E-value=0.4 Score=46.29 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 678899999999999999998775
No 418
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.78 E-value=0.38 Score=44.63 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=21.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
-.+++.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999998887654
No 419
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.72 E-value=0.39 Score=44.02 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...+++.|++|+|||+|..++...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 368999999999999999998654
No 420
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.71 E-value=0.39 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
...+++.|++|+|||+|..++..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999998864
No 421
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.66 E-value=0.22 Score=49.15 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.-+.|.|+.|+||||+++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999999887
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.63 E-value=0.4 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998753
No 423
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=86.63 E-value=0.54 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
...++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999877665543
No 424
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.62 E-value=0.62 Score=51.13 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=30.3
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005667 329 EKSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 329 p~~~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~s~l 366 (684)
++..++++|++|+|||+++-.+|..+ +.....+++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 45788999999999999999998666 556777777543
No 425
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.60 E-value=0.37 Score=44.66 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.1
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q 005667 332 NILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~ 352 (684)
.+++.|++|+|||+|...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998864
No 426
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.48 E-value=0.42 Score=44.98 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...|+|.|++|+|||+|..++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998754
No 427
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.47 E-value=1.2 Score=44.52 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHH-HHHHHHHHh--CCCEEEEe
Q 005667 331 SNILLMGPTGSGKTL-LAKTLARYV--NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~-LAraIA~~l--~~pfv~v~ 362 (684)
.-.+++||-|+|||+ |.+.+-+.. +...+.+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 456789999999999 555553332 44444443
No 428
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=86.43 E-value=0.46 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..++++|++|+|||+|..++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 429
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.37 E-value=0.23 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..+.|.|++|+|||+|.++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999988764
No 430
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=86.29 E-value=0.39 Score=48.56 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999654
No 431
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.27 E-value=0.6 Score=51.30 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
..+.|.||+|+|||+|++.|++.....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 577899999999999999999998543
No 432
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.21 E-value=0.63 Score=49.51 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l~~p 357 (684)
..+.|.||+|+|||+|.+.|++.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 578899999999999999999998644
No 433
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.17 E-value=0.43 Score=44.51 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999999754
No 434
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.15 E-value=0.41 Score=53.48 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..++|.||+|+|||+|++.++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 678899999999999999998765
No 435
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.12 E-value=0.43 Score=44.90 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.-.|++.|++|+|||+|.+.+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 368999999999999999888654
No 436
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.10 E-value=0.44 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.||||+|||+|.++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 577799999999999999998776
No 437
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.08 E-value=0.41 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988643
No 438
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=86.01 E-value=0.36 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
.-.+++.|++|+|||+|.+.+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998764
No 439
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.98 E-value=0.47 Score=44.70 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998754
No 440
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.96 E-value=0.36 Score=53.85 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=26.6
Q ss_pred CCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005667 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
++..+.+++..+.|.||+|+|||||.++|+..+.
T Consensus 21 ~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 21 FARTFDFDELVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEccceEEEECCCCCcHHHHHHHHhcCCC
Confidence 3344555555677999999999999999998873
No 441
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.95 E-value=0.33 Score=44.76 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.2
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
..+++.|++|+|||+|...+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 789999999999999998875
No 442
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.92 E-value=0.5 Score=43.40 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|.+.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988753
No 443
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=85.91 E-value=0.42 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...+++.|++|+|||+|..++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999754
No 444
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.90 E-value=0.44 Score=43.90 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..++|.|++|+|||+|..++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6899999999999999999874
No 445
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=85.86 E-value=0.66 Score=49.30 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
.-++|.|+||+|||++|..+|..+ +.+...++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 578899999999999999997664 556555554
No 446
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.73 E-value=0.46 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 447
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.53 E-value=0.47 Score=44.53 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
-.|+|.|++|+|||+|.+.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 689999999999999999997654
No 448
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.48 E-value=0.36 Score=51.56 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=24.1
Q ss_pred ccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 325 TVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 325 ~~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.+..+..-.+|+||+|+|||++..+|+-.+
T Consensus 18 ~i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 18 DIEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344555678899999999999999997554
No 449
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.45 E-value=0.47 Score=44.04 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..+++.|++|+|||+|..++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999864
No 450
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.45 E-value=0.47 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999999754
No 451
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.39 E-value=0.48 Score=44.39 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...+++.|++|+|||+|.+.+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999753
No 452
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=85.39 E-value=0.49 Score=44.39 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999999764
No 453
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=85.37 E-value=0.8 Score=45.30 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=28.9
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhCC-CEEEEeccc
Q 005667 328 LEKSNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATT 365 (684)
Q Consensus 328 ~p~~~vLL~GPpGTGKT~LAraIA~~l~~-pfv~v~~s~ 365 (684)
.|+.-++|+|.||+||+++|+.+.+.++. .+..+.+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 45678999999999999999999887753 244455543
No 454
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.30 E-value=0.52 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...+++.|++|+|||+|..++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 378999999999999999998653
No 455
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.16 E-value=0.75 Score=48.45 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.|+||+|||+++..++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 678899999999999999998765
No 456
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=85.14 E-value=0.5 Score=44.84 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..++|.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998753
No 457
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.12 E-value=0.56 Score=43.81 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..+++.|++|+|||+|..++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 6899999999999999999975
No 458
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=85.05 E-value=1.1 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|+|+||+|||+|..++...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998765
No 459
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=85.04 E-value=0.5 Score=44.80 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
...++|.|++|+|||+|.+++...-
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3789999999999999999997643
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.02 E-value=0.65 Score=45.18 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=25.1
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005667 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 326 ~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~ 356 (684)
+...+.-.+|+||.|+|||++..+|.-.+..
T Consensus 19 i~f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEeCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445577889999999999999999876643
No 461
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.00 E-value=0.5 Score=44.63 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988643
No 462
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.00 E-value=0.52 Score=43.97 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..+++.|++|+|||+|.+++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999874
No 463
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.90 E-value=0.5 Score=44.17 Aligned_cols=22 Identities=50% Similarity=0.653 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..+++.|++|+|||+|.+.+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998864
No 464
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.87 E-value=0.54 Score=44.85 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+++.|++|+|||+|...+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999987543
No 465
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=84.67 E-value=0.54 Score=44.44 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.8
Q ss_pred cceEEEEccCCCcHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA 351 (684)
...+++.|++|+|||+|...+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999884
No 466
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=84.67 E-value=0.5 Score=46.50 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...|+|+|++|+|||+|..+|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999998753
No 467
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=84.66 E-value=0.77 Score=43.54 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...+++.|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998763
No 468
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.62 E-value=0.56 Score=44.45 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998743
No 469
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=84.59 E-value=0.75 Score=56.05 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=34.0
Q ss_pred ccChHHHHHHHHHHHHhhHHhHhhhhhcccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005667 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 279 VvGQd~aK~~L~~aV~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
.+|.+..++.|...+... . ..+.+.++|+.|+|||+||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~--------d-----------------------~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL--------R-----------------------PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC--------C-----------------------SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc--------C-----------------------CCeEEEEEcCCCccHHHHHHHHHH
Confidence 589999999888877410 0 026788999999999999999875
No 470
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=84.58 E-value=1 Score=54.54 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.2
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
..++|+||.|+|||++.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 678899999999999999994
No 471
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.52 E-value=0.79 Score=49.46 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=26.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~ 363 (684)
..|++++|+||+|||++++.+...+ +.+++.+|.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4899999999999999987765433 556777775
No 472
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.50 E-value=0.91 Score=44.07 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=24.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005667 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~ 362 (684)
+.|.|+-|+||||.++.+++.+ +.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999888 45555443
No 473
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=84.44 E-value=0.61 Score=49.12 Aligned_cols=40 Identities=35% Similarity=0.397 Sum_probs=29.2
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005667 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 326 ~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv~v~~s~l 366 (684)
+.....++||.|++|+|||++|-.+.+ -+..++.=|...+
T Consensus 143 v~~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i 182 (312)
T 1knx_A 143 LEVFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEI 182 (312)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEE
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEE
Confidence 444558999999999999999988765 3455655555444
No 474
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.43 E-value=0.55 Score=45.20 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999764
No 475
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.27 E-value=0.57 Score=45.04 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..++|.|++|+|||+|.+.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999998754
No 476
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.04 E-value=0.6 Score=43.71 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..+++.|++|+|||+|.+.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999764
No 477
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.00 E-value=0.81 Score=50.22 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l---~~pfv~v~~s 364 (684)
.-+++.|+||+|||++|..+|... +.+.+.++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 578899999999999999887655 4566666543
No 478
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.98 E-value=0.61 Score=45.74 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005667 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPpGTGKT~LAraIA~~l~ 355 (684)
=|.|.|+.|+||||+++.+++.+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999999999883
No 479
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=83.92 E-value=0.58 Score=49.37 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=25.8
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005667 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 326 ~~~p~~~vLL~GPpGTGKT~LAraIA~~l~~pfv 359 (684)
+......++|.|++|+|||++|.++.+. +..++
T Consensus 140 v~~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 140 VDVYGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 3444589999999999999999999775 44444
No 480
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=83.70 E-value=0.62 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
...+.|.||+|+|||+|.++|+ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3677899999999999999999 54
No 481
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=83.53 E-value=0.53 Score=48.78 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.++|.||+|+|||+|.+.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46799999999999999998643
No 482
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.47 E-value=0.64 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
...+++.|++|+|||+|..++...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999998753
No 483
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=83.47 E-value=0.39 Score=44.39 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=10.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..+++.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999988853
No 484
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=83.43 E-value=0.6 Score=43.96 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
..+++.|++|+|||+|.+++.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999985
No 485
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=83.40 E-value=0.64 Score=44.10 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..++|.|+||+|||+|...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998753
No 486
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.25 E-value=0.91 Score=50.19 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEec
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l----~~pfv~v~~ 363 (684)
.-++|.|+||+|||++|..+|..+ +.+.+.++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 678899999999999999997665 345666655
No 487
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=83.24 E-value=0.72 Score=49.38 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=25.9
Q ss_pred CcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 323 ~~~~~~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
...+...+...+|+||.|+|||++.++|+-.+
T Consensus 19 ~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 19 PGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp SEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 34556666778899999999999999997654
No 488
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=83.19 E-value=0.64 Score=44.18 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.5
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
-.|++.|++|+|||+|.+++.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 689999999999999999885
No 489
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=83.13 E-value=0.69 Score=43.54 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
...+++.|++|+|||+|.+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999998863
No 490
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.05 E-value=0.65 Score=49.78 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=22.8
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHh
Q 005667 328 LEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 328 ~p~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
.+...+.|.||+|+|||+|.++|+...
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccc
Confidence 344678899999999999999998654
No 491
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=82.93 E-value=0.7 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
..++|.|++|+|||+|.+.+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 68999999999999999998643
No 492
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=82.90 E-value=0.68 Score=44.25 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
-.|+|+|++|+|||+|.+++..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 6899999999999999998874
No 493
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.84 E-value=1.3 Score=48.43 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005667 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
..+.|.||+|+|||||.++|+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 578899999999999999998743
No 494
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=82.84 E-value=0.55 Score=44.67 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
..++|.|++|+|||+|.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 688999999999999999884
No 495
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=82.82 E-value=0.71 Score=43.95 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~~ 353 (684)
-.+++.|++|+|||+|.+.+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988753
No 496
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=82.67 E-value=0.69 Score=43.72 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=20.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005667 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~ 352 (684)
...++|.|++|+|||+|.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999987754
No 497
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.62 E-value=0.56 Score=51.51 Aligned_cols=21 Identities=48% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 005667 333 ILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 333 vLL~GPpGTGKT~LAraIA~~ 353 (684)
+.|+||+|+|||||.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999865
No 498
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=82.53 E-value=2.4 Score=52.06 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=17.5
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA 351 (684)
.++|++||+|+|||.+|-..+
T Consensus 625 ~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 625 MDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CEEEEECCCCTTTHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 589999999999999875443
No 499
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=82.49 E-value=0.7 Score=44.45 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005667 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPpGTGKT~LAraIA~ 352 (684)
..+++.|++|+|||+|...+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6899999999999999998863
No 500
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=82.47 E-value=0.56 Score=48.53 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005667 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPpGTGKT~LAraIA~~l 354 (684)
...+.|.||+|+|||+|.++|+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3677899999999999999998655
Done!