Your job contains 1 sequence.
>005668
MARERHGTTSQQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRD
KFNEIRRRFTVKNGAESTSLVPLVDQLRQIRVQELRAEVQRRDVSIVSLELKVKRLEEER
EKSMKPEADLESDRKAMPEIEAAVDGDGDSNRSFNESNSTTQKAETTNKKQNDDAEGEEE
KEQKMKPEPDVENDPVQNRTESGPDREDRDWSSNGKLNENGNGTGNVKEETDEDNDKTAS
EGKVESVKNKTSAVGGLSESNELWDESKREGKQSSDVQSSASLSRNKRRRSGEEPYDEEV
SPATKKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRL
DRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLVIKEMTDMLRKQQPIAV
TKPKPKPKPEHHRQQPQPPPASLSKPNRGSTMVVCGKRSSIKAISKNAYGKKGDRKDREV
EEKPKVNEKKVDSSFVGIEDKGIKKKRSQERSVSLRRNSRSSSRSGDVKHQFGGNELSSH
DTLEAKTENKKENAVKKKKLGAASFLKRMKQNSPSEVMEDDDEEEDENDNDNDDDDSGDD
SKDSKVEEEKKRRSVTRRDVNRVTRSSRGRGVREENRRRGVGRPPKRSASGAMSPPEKTS
GKRGRDNGESEVGGGGRSRKRTRR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005668
(684 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2060040 - symbol:AT2G42150 species:3702 "Arabi... 240 4.7e-36 3
TAIR|locus:2101477 - symbol:AT3G60110 species:3702 "Arabi... 245 2.5e-19 2
TAIR|locus:2050574 - symbol:AT2G44430 species:3702 "Arabi... 250 3.1e-18 1
TAIR|locus:2095878 - symbol:AT3G57980 species:3702 "Arabi... 237 1.7e-17 2
TAIR|locus:1006230673 - symbol:BRD4 "AT1G61215" species:3... 145 1.7e-16 3
>TAIR|locus:2060040 [details] [associations]
symbol:AT2G42150 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS] InterPro:IPR001005 InterPro:IPR001487
InterPro:IPR009057 Pfam:PF00249 Pfam:PF00439 PROSITE:PS50014
SMART:SM00297 SMART:SM00717 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.10.60 EMBL:AC002561
Gene3D:1.20.920.10 SUPFAM:SSF47370 UniGene:At.42743
UniGene:At.42745 IPI:IPI00537143 PIR:T00925 RefSeq:NP_181745.1
ProteinModelPortal:O48523 SMR:O48523 PaxDb:O48523 PRIDE:O48523
EnsemblPlants:AT2G42150.1 GeneID:818815 KEGG:ath:AT2G42150
TAIR:At2g42150 eggNOG:NOG244537 HOGENOM:HOG000242892
InParanoid:O48523 OMA:LMNETIS PhylomeDB:O48523
ProtClustDB:CLSN2718100 ArrayExpress:O48523 Genevestigator:O48523
Uniprot:O48523
Length = 631
Score = 240 (89.5 bits), Expect = 4.7e-36, Sum P(3) = 4.7e-36
Identities = 49/110 (44%), Positives = 69/110 (62%)
Query: 1 MARERHGTTSXXXXXWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRD 60
MA+ + T W T EELLLACAV+RHGT SW+S++ E+Q S L SLT +CR
Sbjct: 1 MAKPENDVTLTEKQTWSTWEELLLACAVHRHGTESWNSVSAEIQKLSPNLCSLTASACRH 60
Query: 61 KFNEIRRRFT----VKNGAESTSLVPLVDQLRQIRVQELRAEVQRRDVSI 106
K+ +++ RFT V S P +++LR++RV ELR EV++ D+SI
Sbjct: 61 KYFDLKSRFTQELPVPESVAEISTAPWLEELRKLRVDELRREVEQYDLSI 110
Score = 220 (82.5 bits), Expect = 4.7e-36, Sum P(3) = 4.7e-36
Identities = 71/278 (25%), Positives = 121/278 (43%)
Query: 191 VENDPVQNRTES-GPDREDRDWSSNGKLNENGNGTGNVKEE-TDEDNDKTASEGKVESVK 248
V N PVQ E+ PD ++ S N + E G+G + + ED+ + + E +
Sbjct: 153 VPNPPVQLMNETISPDPKEIG-SENTEREEEMAGSGGGESKLAGEDSCRGSCESVEKEPT 211
Query: 249 NKTSAVGGLSESNELWDESKREGKQXXXXXXXXXXXRNKRRRSGEEPYDEEVSPATKKVL 308
+ V +S + + ES+ + + R+ EP E+ SP + K
Sbjct: 212 TNSERVEPVSVTELI--ESEDGASRGEEITSDVQSSASLPRKGTSEPDKEDQSPTSAKDF 269
Query: 309 AVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNC 368
V+S+PL+ F+ ++ SH SHF RRL QE+ Y ++R+H+D I+ R++ GLY +
Sbjct: 270 TVESQPLISFVEILLSHPCGSHFSRRLERQETIEYGTIIREHVDFEIIRKRVEGGLYKSW 329
Query: 369 FQKXXXXXXXXXXXXXXXXRKSSQEYAAAQELRTLVIKEMTDMLR---KQQPIAVTXXXX 425
+ S E+ A++L LV K+MT L+ + I+++
Sbjct: 330 RINFFRDLLLLVNNARVFYHRGSSEFKFAEQLHQLVKKQMTTTLKGLSNRDEISISPPKE 389
Query: 426 XXXXXXXXXXXXXXXASLSKPNRGSTMVVCGKRSSIKA 463
+S PN +V C KRS++ A
Sbjct: 390 EVVAIPSSKPVSSK-PRMSVPN----IVACRKRSALAA 422
Score = 49 (22.3 bits), Expect = 9.7e-18, Sum P(2) = 9.7e-18
Identities = 26/106 (24%), Positives = 37/106 (34%)
Query: 202 SGPDREDRDWSSNGKLNENGNGTGNVKEETDE-DNDKTASEGKVESVKNKTSAVGGLSES 260
S D R +++ G G K +++ DN KT K+ K S V S
Sbjct: 530 SSDDTLKRSSAADSSTTGKGGGAEQRKNNSNKADNKKTPIP-KIRQTNKKASPV---KRS 585
Query: 261 NELWDESKREGKQXXXXXXXXXXXRNKRRRSGEEPYDEEVSPATKK 306
N S+RE + R +GE+ SP KK
Sbjct: 586 NN-GRNSEREAAPSSSSYPILA---KRSRDAGEKEEASSYSPRLKK 627
Score = 44 (20.5 bits), Expect = 4.7e-36, Sum P(3) = 4.7e-36
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 562 AASFLKRMKQNSPSEVM 578
AASFL+RMK S + +
Sbjct: 519 AASFLRRMKVGSSDDTL 535
Score = 38 (18.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 190 DVENDPVQNRTES--GPDREDRDWSSNGKLNENGNGTGNVKEETDEDNDKTASEGKVESV 247
D D V+ E G ++ R S ++ G+ +K + D+ T G E
Sbjct: 497 DDSKDKVKKTDEEKKGGSKKKRAASFLRRMKV-GSSDDTLKRSSAADSSTTGKGGGAEQR 555
Query: 248 KNKTS 252
KN ++
Sbjct: 556 KNNSN 560
>TAIR|locus:2101477 [details] [associations]
symbol:AT3G60110 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR001005 InterPro:IPR001487
InterPro:IPR009057 Pfam:PF00249 Pfam:PF00439 PROSITE:PS50014
SMART:SM00297 SMART:SM00717 EMBL:CP002686 GO:GO:0003677
GO:GO:0003682 SUPFAM:SSF46689 Gene3D:1.20.920.10 SUPFAM:SSF47370
ProtClustDB:CLSN2718100 EMBL:AY056393 EMBL:BT000519 IPI:IPI00538592
RefSeq:NP_567092.4 UniGene:At.26330 ProteinModelPortal:Q93ZQ2
SMR:Q93ZQ2 PRIDE:Q93ZQ2 EnsemblPlants:AT3G60110.1 GeneID:825181
KEGG:ath:AT3G60110 TAIR:At3g60110 OMA:RRTSKEI PhylomeDB:Q93ZQ2
Genevestigator:Q93ZQ2 Uniprot:Q93ZQ2
Length = 641
Score = 245 (91.3 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 75/231 (32%), Positives = 112/231 (48%)
Query: 16 WGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRF--TVKN 73
WGT EEL+L CAV RH WDS+A EVQ RS + ++ +CR K+ +++RRF +V
Sbjct: 52 WGTWEELVLTCAVKRHAFSDWDSVAKEVQARSRSSLIVSAVNCRLKYQDLKRRFQDSVDV 111
Query: 74 GAESTSL----------VPLVDQLRQIRVQELRAEVQRRD---VSIXXXXXXXXXXXXXX 120
G E+T + ++QLR + + ELR EVQR D +S+
Sbjct: 112 GDENTEAAANEEDEVGEISWLEQLRSLHMAELRREVQRCDDSILSLQLKVKKLEEEKDGD 171
Query: 121 XXXMKPEADLESDR-KAMPEIEAAVDGDGDSNRSFNESNSTTQKAETTNKKQNDDAXXXX 179
KP DL++D K + + D D NRS NESNST + +K + D
Sbjct: 172 DGDNKP--DLKNDETKPVRVNRETTESDRDDNRSMNESNSTA----SVDKIADHDRLDGD 225
Query: 180 XXXXXXXXXPDVENDPVQNRTESGPDREDRDWSSNGKLNENG----NGTGN 226
+ + DPV N+ E+ P+ E+R S +++ +G +GT N
Sbjct: 226 KMVKANENSRNPDPDPV-NKAET-PEEEERTVSKRSEMSNSGELDESGTSN 274
Score = 231 (86.4 bits), Expect = 5.6e-17, Sum P(3) = 5.6e-17
Identities = 73/229 (31%), Positives = 108/229 (47%)
Query: 189 PDVEND---PVQ-NRTESGPDREDRDWSSNGKLNENGNGTGNVKEETDEDN---DKTASE 241
PD++ND PV+ NR + DR+D N +NE+ N T +V + D D DK
Sbjct: 177 PDLKNDETKPVRVNRETTESDRDD-----NRSMNES-NSTASVDKIADHDRLDGDKMVKA 230
Query: 242 GKVESVKNKTSAVGGLSESNELWDE--SKREGKQXXXXXXXXXXXRNKRRRSGEEPYDEE 299
E+ +N +E+ E + SKR +R G++ Y
Sbjct: 231 N--ENSRNPDPDPVNKAETPEEEERTVSKRSEMSNSGELDESGTSNCLGKRKGQK-YRSG 287
Query: 300 VSPATKKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSR 359
K KS+PL+ + +IRSH S FE RLRSQ+++ YK+L+RQH+D++TI+ +
Sbjct: 288 GGGGGVKSAGDKSQPLIDIIKLIRSHPRGSVFESRLRSQDTKDYKRLIRQHLDMKTIEKK 347
Query: 360 LDRGLYSNCFQKXXXXXXXXXXXXXXXXRKSSQEYAAAQELRTLVIKEM 408
+++G Y + SS E AAQELRTLV EM
Sbjct: 348 MEKGSYVSSSLSFYRDLKLLFTNAIVFFPTSSSESIAAQELRTLVSNEM 396
Score = 59 (25.8 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 26/111 (23%), Positives = 44/111 (39%)
Query: 230 ETDEDNDKTASEGKVESVKNKTSAVGGLSESNELWDESKREGKQXXXXXXXXXXXRNKRR 289
+ DE + SE K+ + TSA S E+ +K + K K
Sbjct: 447 QKDEKKSQEVSEEKIVTTTATTSARSSRRTSKEIAVVAK-DTKTGRAKNNIKKQTDTKTE 505
Query: 290 RSGEEPYD-EEVSPATKKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQE 339
S ++ + EE S KK +A K + + FL I+ + E ++Q+
Sbjct: 506 SSDDDDDEKEENSKTEKKTVADKKKSVADFLKRIKKNSPQKGKETTSKNQK 556
Score = 49 (22.3 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 563 ASFLKRMKQNSPSE 576
A FLKR+K+NSP +
Sbjct: 533 ADFLKRIKKNSPQK 546
Score = 41 (19.5 bits), Expect = 5.6e-17, Sum P(3) = 5.6e-17
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 124 MKPEADLESDRKAMPEIEAAVDGDGDSNRSFNE 156
M + D + + E + GDGD N + N+
Sbjct: 15 MNDDDDTNNINNSSTEFDNNRIGDGDDNSNLNQ 47
>TAIR|locus:2050574 [details] [associations]
symbol:AT2G44430 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR001005 InterPro:IPR001487
InterPro:IPR009057 Pfam:PF00249 Pfam:PF00439 PROSITE:PS50014
SMART:SM00297 SMART:SM00717 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:1.20.920.10 SUPFAM:SSF47370 InterPro:IPR017877
PROSITE:PS50090 EMBL:AC004521 HOGENOM:HOG000242892
ProtClustDB:CLSN2718100 EMBL:AY120707 EMBL:BT009664 IPI:IPI00538687
PIR:T02398 RefSeq:NP_181971.1 UniGene:At.43353
ProteinModelPortal:O64877 SMR:O64877 PRIDE:O64877
EnsemblPlants:AT2G44430.1 GeneID:819050 KEGG:ath:AT2G44430
TAIR:At2g44430 eggNOG:NOG318143 InParanoid:O64877 OMA:PIIVCRK
PhylomeDB:O64877 ArrayExpress:O64877 Genevestigator:O64877
Uniprot:O64877
Length = 646
Score = 250 (93.1 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 78/271 (28%), Positives = 117/271 (43%)
Query: 4 ERHGTTSXXXXXWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSL--TPQSCRDK 61
+ T WGT EELLLACAV RHG WDS+A EV++RSS LS L + CR K
Sbjct: 38 DNSNTKKSQTQAWGTWEELLLACAVKRHGFGDWDSVATEVRSRSS-LSHLLASANDCRHK 96
Query: 62 FNEIRRRF----------TVKNGAESTSLV----PLVDQLRQIRVQELRAEVQRRDVSIX 107
+ +++RRF TV+ E V P ++QLR +RV ELR EV+R D SI
Sbjct: 97 YRDLKRRFHEQEKTDVTATVEEEEEEEERVGNNIPWLEQLRNLRVAELRREVERYDCSIL 156
Query: 108 XXXXXXXXXXXXXXXXMKPEADLESDRKAMPEIEAAVDGDGDSNRSFNESNSTTQKAETT 167
+ + DLE++RK E + DG + ++ S ++++
Sbjct: 157 SLQLKVKKLEEEREVG-EEKPDLENERK-----EERSENDGSESEHREKAVSAAEESDRE 210
Query: 168 NKKQNDDAXXXXXXXXXXXXXPD---VENDPVQNRTESGPDREDRDWSSNGKLNENGNGT 224
N+ N+ + D N PD ++D ++ + E
Sbjct: 211 NRSMNESNSTATAGEEERVCGDEPSQTREDDSGNDKNPDPDPVNKD-ATAAEEEEGSVSR 269
Query: 225 GNVKEETDEDNDKTASEGKVESVKNKTSAVG 255
G+ +DE + SE K + + K G
Sbjct: 270 GSEASHSDELGESGTSESKWKRKRRKQGGAG 300
Score = 243 (90.6 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 94/317 (29%), Positives = 137/317 (43%)
Query: 189 PDVENDPVQNRTES-GPDREDRDWS---------SNGKLNE-NGNGTGNVKE-------- 229
PD+EN+ + R+E+ G + E R+ + N +NE N T +E
Sbjct: 176 PDLENERKEERSENDGSESEHREKAVSAAEESDRENRSMNESNSTATAGEEERVCGDEPS 235
Query: 230 ETDED---NDKTASEGKVESVKNKTSAV---GGLSESNELWDESKREGKQXXXXXXXXXX 283
+T ED NDK V K+ T+A G +S +E S G+
Sbjct: 236 QTREDDSGNDKNPDPDPVN--KDATAAEEEEGSVSRGSEA-SHSDELGESGTSESKW--- 289
Query: 284 XRNKRRRSGEEPYDEEVSPATKKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERY 343
+ KRR+ G E+ A K S+PL+ L +IRSH S FERRLRSQE++ Y
Sbjct: 290 -KRKRRKQGGAG---EIRSAESK-----SQPLISLLDLIRSHPRGSLFERRLRSQEAKDY 340
Query: 344 KKLVRQHIDLRTIQSRLDRGLYSNCFQKXXXXXXXXXXXXXXXXRKSSQEYAAAQELRTL 403
K +V+QH+D+ TIQ +L +G Y + SS E AA ELR +
Sbjct: 341 KSMVKQHLDIETIQRKLKQGSYDSSSLIFYRDLQLLFTNAIVFFPLSSSESMAAHELRAV 400
Query: 404 VIKEMTDMLRKQQPIAVTXXXXXXXXXXXXXXXXXXXASLSKPNRGSTMVVCGKRSSIKA 463
V +EM K P + +SLS+ +VVC KR S+ A
Sbjct: 401 VSQEMRKETGKAGPRLIKQEASGMRSGKADAETSD--SSLSRQKSSGPLVVCKKRRSVSA 458
Query: 464 I---SKNAYGKKGDRKD 477
S +++ +K D K+
Sbjct: 459 KASPSSSSFSQKDDTKE 475
>TAIR|locus:2095878 [details] [associations]
symbol:AT3G57980 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR001005 InterPro:IPR001487 Pfam:PF00249
Pfam:PF00439 PROSITE:PS50014 SMART:SM00297 SMART:SM00717
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003682
InterPro:IPR017930 PROSITE:PS51294 Gene3D:1.20.920.10
SUPFAM:SSF47370 EMBL:AL132977 HOGENOM:HOG000242892
ProtClustDB:CLSN2718100 IPI:IPI00525752 PIR:T46020
RefSeq:NP_191357.1 UniGene:At.28706 ProteinModelPortal:Q9M2Q0
SMR:Q9M2Q0 PRIDE:Q9M2Q0 EnsemblPlants:AT3G57980.1 GeneID:824967
KEGG:ath:AT3G57980 TAIR:At3g57980 InParanoid:Q9M2Q0 OMA:ESMDESK
PhylomeDB:Q9M2Q0 Genevestigator:Q9M2Q0 Uniprot:Q9M2Q0
Length = 632
Score = 237 (88.5 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 76/249 (30%), Positives = 116/249 (46%)
Query: 19 LEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFT---VKNGA 75
+EELLLACAV+RHGT SWDS+A EV ++S +LT CR K+N+++RRF+ V G+
Sbjct: 1 MEELLLACAVHRHGTDSWDSVASEVHKQNSTFRTLTAIDCRHKYNDLKRRFSRNLVSPGS 60
Query: 76 --EST-----SLVPLVDQLRQIRVQELRAEVQRRDVSIXXXXXXXXXXXXXXXXXMKPE- 127
E T S VP +++LR++RV ELR EV+R D+SI +K E
Sbjct: 61 ADEETLAAEISSVPWLEELRKLRVDELRREVERYDLSISSLQLKVKTLEDEREKSLKTEN 120
Query: 128 ADLESDRKAMPEIEAAVDGDGDSNRSFNESNSTTQKAETTNKKQNDDAXXXXXXXXXXXX 187
+DL DR A + G+ N T+ + + N
Sbjct: 121 SDL--DRIAETKENHTESGN-------NSGVPVTELKNSPDPNDNSPGTGSENTNRAVKI 171
Query: 188 XPDVENDPVQNRTESGPDREDRDWSSNGKLNENGNGT-GNVKEETDEDNDKTASEGKVES 246
V+ +P NR G D +++ ++G G+ +V +E+D K E
Sbjct: 172 AEPVDEEP--NRI-GGEDNDEKP-----AREDSGRGSCESVAKESDRAEPKREGNDSPEL 223
Query: 247 VKNKTSAVG 255
V++ + G
Sbjct: 224 VESMDESKG 232
Score = 227 (85.0 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 83/340 (24%), Positives = 135/340 (39%)
Query: 147 DGDSNRSFNESNSTTQKAETTNKKQNDDAXXXXXXXXXXXXXPDVENDPVQNRTESGPDR 206
+ + +S NS + T + + PD ND N +G +
Sbjct: 109 EDEREKSLKTENSDLDRIAETKENHTESGNNSGVPVTELKNSPD-PND---NSPGTGSEN 164
Query: 207 EDRDWSSNGKLNENGNGTGNVKEETDEDNDKTAS-EGKVESVKNKTSAVGGLSESN---- 261
+R ++E N G E+ DE + S G ESV ++ E N
Sbjct: 165 TNRAVKIAEPVDEEPNRIGG--EDNDEKPAREDSGRGSCESVAKESDRAEPKREGNDSPE 222
Query: 262 --ELWDESK-REGKQXXXXXXXXXXXRNKRRRSGEEPYDEEVSPATKKVLAVKSEPLVRF 318
E DESK E + K ++P +++ S K+ V+S+PL F
Sbjct: 223 LVESMDESKGEEDTKETSDGQSSASFPRKETVDQDQPDNKDQSLTVNKIF-VESQPLSDF 281
Query: 319 LGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKXXXXXXX 378
+ +++SH + SHF RRL +QE+ Y +++RQHID I+SR++ G Y K
Sbjct: 282 IEILQSHPIGSHFSRRLETQETSDYYRIIRQHIDFEMIRSRVEEGYYKTARTKFFRDLLL 341
Query: 379 XXXXXXXXXRKSSQEYAAAQELRTLVIKEMTDMLRKQQPIAVTXXXXXXXXXXXXXXXXX 438
+ S E+ AA++L L+ K+M+ + KQ
Sbjct: 342 LINNVRVFYGEPSPEFNAAKQLYQLIKKQMSFKIPKQ------TLPPPKEDALVTSKEEV 395
Query: 439 XXASLSKPNRGSTMVVCGKRSSIKAISKNAYGKKGDRKDR 478
+SL KP ++ C KRSS+ S + + +K R
Sbjct: 396 KVSSL-KPTLSVPIIACRKRSSLAVRSPASVTETLKKKTR 434
Score = 50 (22.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 562 AASFLKRMKQNSPSEVM 578
AASFLKRMK S SE +
Sbjct: 524 AASFLKRMKGVSSSETV 540
>TAIR|locus:1006230673 [details] [associations]
symbol:BRD4 "AT1G61215" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001487 Pfam:PF00439 PROSITE:PS50014
SMART:SM00297 EMBL:CP002684 GenomeReviews:CT485782_GR
Gene3D:1.20.920.10 SUPFAM:SSF47370 EMBL:BT015126 EMBL:BT015908
IPI:IPI00533894 RefSeq:NP_974063.1 UniGene:At.49477
ProteinModelPortal:Q6AWX2 SMR:Q6AWX2 STRING:Q6AWX2 PRIDE:Q6AWX2
EnsemblPlants:AT1G61215.1 GeneID:2745841 KEGG:ath:AT1G61215
TAIR:At1g61215 InParanoid:Q6AWX2 OMA:ESNDECH PhylomeDB:Q6AWX2
ProtClustDB:CLSN2681296 Genevestigator:Q6AWX2 Uniprot:Q6AWX2
Length = 475
Score = 145 (56.1 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 47/165 (28%), Positives = 78/165 (47%)
Query: 9 TSXXXXXWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSL-TPQSCRDKFNEIRR 67
T+ WGT EELLL AV RHGT W +A E+ RS +L + TP+ C+ K+ ++R+
Sbjct: 7 TTTMESDWGTWEELLLGGAVLRHGTGDWTVVADEL--RSHSLPEIFTPEICKAKYKDLRK 64
Query: 68 RFTVKNGAESTSLVPLVDQLRQIRVQELRAEVQRRDVSIXXXXXXXXXXXXXXXXXMKPE 127
R+ G ++ ++L++ RV EL+A + + + SI +
Sbjct: 65 RYV---GCKAW-----FEELKKKRVAELKAALLKSEDSIGSLESKLQSLKSESNDECH-Q 115
Query: 128 ADLESDRKAMPEIEAAVDGDG-----DSNRSFNESNSTTQKAETT 167
+ +S R E +G G D+++ + S TQ+ TT
Sbjct: 116 NNYDSSRTLSLEPSPKSEGGGECTSKDTSKDLSSVGSFTQQELTT 160
Score = 137 (53.3 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 36/110 (32%), Positives = 57/110 (51%)
Query: 308 LAVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSN 367
LA+ E L++ I + + F RRL SQ+ RYKKLVR+H+DL T+QSR++ G +
Sbjct: 263 LALPKE-LMKIYNTIAQNECALVFRRRLDSQKRGRYKKLVRRHMDLDTVQSRIN-GCSIS 320
Query: 368 CFQKXXXXXXXXXXXXXXXXRKSSQEYAAAQELRTLVIKEMTDMLRKQQP 417
++ K+++EY +A LR +V K + L + P
Sbjct: 321 SAKELFRDFLLVANNAAIFYSKNTREYKSAVGLRDIVTKSLRHYLTEDHP 370
Score = 42 (19.8 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 233 EDNDKTASEGKVESVKN-KTSAVGGLSESNELWDESKREGKQXXXXXXXXXXXRNKRRR 290
+D KT+S G SV + SAV S + + +++G+Q KR R
Sbjct: 416 QDMAKTSSRGNKRSVTDLPVSAVKS-SAAGKKGTAVRKDGRQANRGLESPALMGRKRNR 473
Score = 39 (18.8 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 461 IKAISKNAYGKKGD--RKD 477
+ A+ +A GKKG RKD
Sbjct: 435 VSAVKSSAAGKKGTAVRKD 453
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.308 0.125 0.341 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 684 479 0.00079 119 3 11 23 0.37 35
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 610 (65 KB)
Total size of DFA: 252 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.14u 0.08s 43.22t Elapsed: 00:00:02
Total cpu time: 43.14u 0.08s 43.22t Elapsed: 00:00:02
Start: Tue May 21 18:12:53 2013 End: Tue May 21 18:12:55 2013