BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005668
(684 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 295 PYDEEVSPATKKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLR 354
P ++P T+K E L R L +++H+++ F + ++ Y ++++ +DL
Sbjct: 2 PLGSVLTPLTEK----DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLA 57
Query: 355 TIQSRLDRGLY 365
T++ R+ R Y
Sbjct: 58 TMEERVQRRYY 68
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 198 NRT----ESGPDREDRDWSSNGKLNENGNGTGNVKEETDEDNDKTASEGKVESVKNKTSA 253
NRT +SG DR D ++N N +GTGN + + + T G + ++ N
Sbjct: 23 NRTICIIDSGYDRSHNDLNANNVTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAIANNEGV 82
Query: 254 VG 255
VG
Sbjct: 83 VG 84
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 295 PYDEEVSPATKKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLR 354
P ++P T+K E L R L +++H+++ F + ++ Y ++++ +DL
Sbjct: 2 PLGSVLTPLTEK----DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLA 57
Query: 355 TIQSRLDRGLY 365
T++ R+ R Y
Sbjct: 58 TMEERVQRRYY 68
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 290 RSGEEPYDEEVSP---ATKKVLAVKS-------EPLVRFLGMIRSHRLSSHFERRLRSQE 339
+S E DE V P +T+ + V + E L R L +++H+++ F + +
Sbjct: 42 QSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPND 101
Query: 340 SERYKKLVRQHIDLRTIQSRLDRGLY 365
+ Y ++++ +DL T++ R+ R Y
Sbjct: 102 APDYYGVIKEPMDLATMEERVQRRYY 127
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 290 RSGEEPYDEEVSP---ATKKVLAVKS-------EPLVRFLGMIRSHRLSSHFERRLRSQE 339
+S E DE V P +T+ + V + E L R L +++H+++ F + +
Sbjct: 42 QSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPND 101
Query: 340 SERYKKLVRQHIDLRTIQSRLDRGLY 365
+ Y ++++ +DL T++ R+ R Y
Sbjct: 102 APDYYGVIKEPMDLATMEERVQRRYY 127
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 315 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLY 365
L L I+SH + F ++ E+ Y +++R IDL+T+ RL Y
Sbjct: 8 LKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYY 58
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 315 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLY 365
L L I+SH + F ++ E+ Y +++R IDL+T+ RL Y
Sbjct: 12 LKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYY 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,998,613
Number of Sequences: 62578
Number of extensions: 405636
Number of successful extensions: 545
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 15
length of query: 684
length of database: 14,973,337
effective HSP length: 105
effective length of query: 579
effective length of database: 8,402,647
effective search space: 4865132613
effective search space used: 4865132613
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)