BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005668
(684 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0E9|BRD8_HUMAN Bromodomain-containing protein 8 OS=Homo sapiens GN=BRD8 PE=1 SV=2
Length = 1235
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 315 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFR 374
L+ MI SHR SS F + + +++ YK +V++ +DL +++ L +G Q F R
Sbjct: 1112 LLPVWKMIASHRFSSPFLKPVSERQAPGYKDVVKRPMDLTSLKRNLSKGRIRTMAQ-FLR 1170
Query: 375 DLLLLFNNFVIFFRKSSQEYAAAQELRTLVIKEM 408
DL+L+F N V++ Y A E+R V++++
Sbjct: 1171 DLMLMFQNAVMYNDSDHHVYHMAVEMRQEVLEQI 1204
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 325 HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFV 384
HR ++ F + + + Y +V++ +DL TI+ ++ GL + +F RD++L+F N V
Sbjct: 726 HRYANVFLQPVTDDIAPGYHSIVQRPMDLSTIKKNIENGLIRST-AEFQRDIMLMFQNAV 784
Query: 385 IFFRKSSQEYAAAQELRTLVIKEMTDMLRKQ 415
++ Y A E++ V++++ L Q
Sbjct: 785 MYNSSDHDVYHMAVEMQRDVLEQIQQFLATQ 815
>sp|Q8R3B7|BRD8_MOUSE Bromodomain-containing protein 8 OS=Mus musculus GN=Brd8 PE=1 SV=2
Length = 951
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 325 HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFV 384
HR ++ F + + + Y +V++ +DL TI+ ++ GL + +F RD++L+F N V
Sbjct: 799 HRYANVFLQPVTDDIAPGYHSIVQRPMDLSTIKKNIENGLIRST-AEFQRDIMLMFQNAV 857
Query: 385 IFFRKSSQEYAAAQELRTLVIKEMTDMLRKQ 415
++ Y A E++ V++++ L Q
Sbjct: 858 MYNSSDHDVYHMAVEMQRDVLEQIQQFLATQ 888
>sp|A8DZJ1|BAZ1B_XENLA Tyrosine-protein kinase BAZ1B OS=Xenopus laevis GN=baz1b PE=2 SV=2
Length = 1441
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 318 FLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLL 377
L + +R S F + E E Y K+V +D +T+QS+ G Y Q+F DL
Sbjct: 1316 ILAKLIKYRFSWPFREPFNADEIEDYTKVVTTPMDFQTMQSKCSCGSYQT-VQEFLNDLK 1374
Query: 378 LLFNNFVIFFRKSSQEYAAAQELRTLVIKEMTDMLRKQQPIAVTKPKPKPKPEHHR--QQ 435
L+F N +++ S + + ++ D+L K P + + HR Q
Sbjct: 1375 LVFGNTELYYEAGSSQLSCLEKTEQCA----RDLLGKHLPAHTYQRR-------HRKHQS 1423
Query: 436 PQPPPASLSKPNRG 449
P+P P + + P RG
Sbjct: 1424 PEPEPET-ANPGRG 1436
>sp|Q6JHU9|CBP_RAT CREB-binding protein OS=Rattus norvegicus GN=Crebbp PE=2 SV=1
Length = 2442
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 343 YKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRT 402
Y +V+ +DL TI+ +LD G Y +Q + D+ L+FNN ++ RK+S+ Y +L
Sbjct: 1126 YFDIVKNPMDLSTIKRKLDTGQYQEPWQ-YVDDVWLMFNNAWLYNRKTSRVYKFCSKLAE 1184
Query: 403 LVIKEMTDMLR 413
+ +E+ +++
Sbjct: 1185 VFEQEIDPVMQ 1195
>sp|P45481|CBP_MOUSE CREB-binding protein OS=Mus musculus GN=Crebbp PE=1 SV=3
Length = 2441
Score = 40.8 bits (94), Expect = 0.037, Method: Composition-based stats.
Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 40/257 (15%)
Query: 159 STTQKAETTNKKQNDDAEGEEEKEQKMKPEPDVENDPVQNRTESGPDREDRDWSSNGKLN 218
S+ AET++++ D E K + D E +P +++ E P E +
Sbjct: 977 SSVTSAETSSQQPGPDVPMLEMKTEVQTD--DAEPEPTESKGE--PRSE--------MME 1024
Query: 219 ENGNGTGNVKEETDEDNDKTASEGKVESVKNKTSAVGGLSESNELWDESKREGKQSSDVQ 278
E+ G+ VKEETD K+ +VE K + E N SS+
Sbjct: 1025 EDLQGSSQVKEETDTTEQKSEPM-EVEEKKPEVKVEAKEEEEN------------SSNDT 1071
Query: 279 SSASLSRNKRRRSGEEPYDEEVSPATKKVLAVKSEPLVRFLGMIRSHRLSSHFERRLRSQ 338
+S S S ++ R+ +P EE+ A L + R S F + + Q
Sbjct: 1072 ASQSTSPSQPRKKIFKP--EELRQALMPTLE----------ALYRQDPESLPFRQPVDPQ 1119
Query: 339 --ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAA 396
Y +V+ +DL TI+ +LD G Y +Q + D+ L+FNN ++ RK+S+ Y
Sbjct: 1120 LLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQ-YVDDVWLMFNNAWLYNRKTSRVYKF 1178
Query: 397 AQELRTLVIKEMTDMLR 413
+L + +E+ +++
Sbjct: 1179 CSKLAEVFEQEIDPVMQ 1195
>sp|Q92793|CBP_HUMAN CREB-binding protein OS=Homo sapiens GN=CREBBP PE=1 SV=3
Length = 2442
Score = 38.1 bits (87), Expect = 0.24, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 343 YKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRT 402
Y +V+ +DL TI+ +LD G Y +Q + D+ L+FNN ++ RK+S+ Y +L
Sbjct: 1125 YFDIVKNPMDLSTIKRKLDTGQYQEPWQ-YVDDVWLMFNNAWLYNRKTSRVYKFCSKLAE 1183
Query: 403 LVIKEMTDMLR 413
+ +E+ +++
Sbjct: 1184 VFEQEIDPVMQ 1194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.125 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,411,943
Number of Sequences: 539616
Number of extensions: 11843282
Number of successful extensions: 170692
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 3195
Number of HSP's that attempted gapping in prelim test: 90015
Number of HSP's gapped (non-prelim): 48050
length of query: 684
length of database: 191,569,459
effective HSP length: 124
effective length of query: 560
effective length of database: 124,657,075
effective search space: 69807962000
effective search space used: 69807962000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)