Query 005668
Match_columns 684
No_of_seqs 192 out of 1157
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 11:56:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05507 Bromo_brd8_like Bromod 99.9 6.8E-26 1.5E-30 203.5 10.9 100 311-411 4-103 (104)
2 cd05497 Bromo_Brdt_I_like Brom 99.9 1.5E-25 3.3E-30 202.6 10.8 95 315-410 10-106 (107)
3 cd05495 Bromo_cbp_like Bromodo 99.9 3.5E-25 7.6E-30 200.5 11.8 100 312-412 5-107 (108)
4 cd05505 Bromo_WSTF_like Bromod 99.9 2.4E-25 5.1E-30 198.4 10.4 96 312-408 2-97 (97)
5 cd05496 Bromo_WDR9_II Bromodom 99.9 4.8E-25 1E-29 203.3 11.6 104 311-415 6-110 (119)
6 cd05504 Bromo_Acf1_like Bromod 99.9 1.2E-24 2.6E-29 199.0 11.4 101 310-411 12-112 (115)
7 cd05508 Bromo_RACK7 Bromodomai 99.9 1.5E-24 3.2E-29 194.1 10.2 94 313-408 6-99 (99)
8 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.3E-24 5E-29 191.1 10.4 95 313-408 3-97 (97)
9 KOG1474 Transcription initiati 99.9 1.4E-24 3.1E-29 246.4 10.4 106 308-414 220-327 (640)
10 cd05509 Bromo_gcn5_like Bromod 99.9 4E-24 8.7E-29 189.8 11.0 97 313-410 4-100 (101)
11 cd05502 Bromo_tif1_like Bromod 99.9 5.4E-24 1.2E-28 192.2 11.6 100 312-413 6-108 (109)
12 cd05510 Bromo_SPT7_like Bromod 99.9 8.6E-24 1.9E-28 193.0 10.9 99 313-412 10-110 (112)
13 cd05528 Bromo_AAA Bromodomain; 99.9 9E-24 2E-28 192.8 10.7 100 313-413 6-109 (112)
14 cd05506 Bromo_plant1 Bromodoma 99.9 1.3E-23 2.8E-28 185.8 10.7 95 313-408 3-99 (99)
15 cd05511 Bromo_TFIID Bromodomai 99.9 2E-23 4.3E-28 190.1 11.4 100 314-414 4-103 (112)
16 cd05513 Bromo_brd7_like Bromod 99.9 1.5E-23 3.2E-28 187.4 10.1 93 313-406 4-96 (98)
17 cd05512 Bromo_brd1_like Bromod 99.9 1.4E-23 3E-28 187.3 9.9 90 313-403 4-93 (98)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 2E-23 4.3E-28 188.6 10.4 97 313-410 4-106 (107)
19 cd05499 Bromo_BDF1_2_II Bromod 99.9 2.3E-23 4.9E-28 185.7 10.6 96 312-408 2-102 (102)
20 cd05520 Bromo_polybromo_III Br 99.9 2E-23 4.4E-28 187.7 10.1 95 312-407 2-102 (103)
21 cd05500 Bromo_BDF1_2_I Bromodo 99.9 3.2E-23 7E-28 185.5 10.6 96 312-408 6-103 (103)
22 cd05498 Bromo_Brdt_II_like Bro 99.9 4.3E-23 9.4E-28 183.6 10.5 95 313-408 3-102 (102)
23 cd05524 Bromo_polybromo_I Brom 99.9 1.7E-22 3.6E-27 184.5 10.8 101 313-414 5-111 (113)
24 cd05515 Bromo_polybromo_V Brom 99.9 2.1E-22 4.5E-27 181.3 10.6 95 313-408 3-103 (105)
25 cd05519 Bromo_SNF2 Bromodomain 99.9 2.3E-22 5.1E-27 179.9 10.1 94 313-407 3-102 (103)
26 cd05501 Bromo_SP100C_like Brom 99.9 3.9E-22 8.5E-27 179.9 11.4 97 312-412 4-100 (102)
27 smart00297 BROMO bromo domain. 99.9 5.3E-22 1.1E-26 175.2 10.8 97 313-410 10-106 (107)
28 cd05529 Bromo_WDR9_I_like Brom 99.9 5.3E-22 1.1E-26 184.8 11.2 98 311-409 25-126 (128)
29 cd05518 Bromo_polybromo_IV Bro 99.9 9.1E-22 2E-26 177.1 9.9 94 313-407 3-102 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 1.1E-21 2.4E-26 177.6 10.2 94 313-407 5-104 (106)
31 cd05517 Bromo_polybromo_II Bro 99.9 1.8E-21 3.9E-26 175.1 10.1 93 313-406 3-101 (103)
32 cd04369 Bromodomain Bromodomai 99.8 5.9E-21 1.3E-25 162.3 9.7 94 313-407 3-98 (99)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.8 6.7E-21 1.5E-25 171.4 10.4 93 314-407 5-103 (104)
34 PF00439 Bromodomain: Bromodom 99.8 8.3E-21 1.8E-25 160.9 9.6 84 315-399 1-84 (84)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 3.7E-20 8E-25 167.7 10.4 94 313-409 4-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 8.7E-20 1.9E-24 166.4 11.4 96 315-411 5-106 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 9.8E-17 2.1E-21 146.8 10.2 97 313-412 6-108 (110)
38 KOG1245 Chromatin remodeling c 99.7 7.4E-17 1.6E-21 195.3 7.9 97 315-413 1306-1402(1404)
39 COG5076 Transcription factor i 99.7 9.2E-17 2E-21 172.0 7.1 90 324-414 162-251 (371)
40 KOG1472 Histone acetyltransfer 99.5 1.6E-14 3.5E-19 164.8 5.6 100 314-414 610-709 (720)
41 cd05494 Bromodomain_1 Bromodom 99.1 5.5E-11 1.2E-15 109.5 4.1 77 313-389 6-90 (114)
42 KOG0955 PHD finger protein BR1 99.1 1.7E-10 3.7E-15 136.9 7.3 100 313-413 568-667 (1051)
43 KOG0008 Transcription initiati 99.0 5.3E-10 1.1E-14 133.1 6.1 93 320-413 1392-1484(1563)
44 cd05491 Bromo_TBP7_like Bromod 98.8 5E-09 1.1E-13 97.5 6.2 42 349-391 63-104 (119)
45 KOG0008 Transcription initiati 98.8 8.9E-09 1.9E-13 122.9 7.1 105 308-413 1259-1363(1563)
46 KOG1827 Chromatin remodeling c 98.8 2.5E-08 5.5E-13 113.4 10.1 95 313-408 55-155 (629)
47 KOG0386 Chromatin remodeling c 98.7 1.1E-08 2.4E-13 119.9 6.8 101 313-414 1027-1133(1157)
48 KOG1474 Transcription initiati 98.5 1.8E-08 3.9E-13 116.0 0.7 93 321-414 3-97 (640)
49 KOG1472 Histone acetyltransfer 98.5 1.2E-07 2.6E-12 109.5 4.4 72 324-396 300-371 (720)
50 KOG1828 IRF-2-binding protein 98.4 4.5E-08 9.8E-13 105.6 0.2 98 315-413 24-121 (418)
51 KOG1828 IRF-2-binding protein 98.1 1.7E-06 3.7E-11 93.7 4.0 89 312-402 209-298 (418)
52 PF00249 Myb_DNA-binding: Myb- 97.7 4.5E-05 9.8E-10 59.7 4.7 46 14-65 2-47 (48)
53 smart00717 SANT SANT SWI3, AD 97.4 0.00022 4.8E-09 53.3 4.5 48 14-68 2-49 (49)
54 COG5076 Transcription factor i 97.4 5.3E-05 1.1E-09 82.1 0.9 94 318-412 271-364 (371)
55 cd00167 SANT 'SWI3, ADA2, N-Co 96.9 0.0012 2.7E-08 48.6 3.9 44 15-65 1-44 (45)
56 cd05493 Bromo_ALL-1 Bromodomai 96.2 0.0074 1.6E-07 57.8 5.1 65 350-415 59-123 (131)
57 PF13921 Myb_DNA-bind_6: Myb-l 95.8 0.0086 1.9E-07 48.4 3.2 48 16-71 1-49 (60)
58 TIGR02894 DNA_bind_RsfA transc 93.7 0.1 2.2E-06 51.6 5.0 101 13-121 4-128 (161)
59 PF13837 Myb_DNA-bind_4: Myb/S 91.7 0.21 4.6E-06 42.9 3.9 71 15-88 3-88 (90)
60 KOG0049 Transcription factor, 90.1 0.29 6.2E-06 57.2 4.0 52 13-71 360-412 (939)
61 KOG0644 Uncharacterized conser 89.2 0.3 6.4E-06 58.5 3.3 63 345-408 1048-1110(1113)
62 COG5259 RSC8 RSC chromatin rem 87.9 0.35 7.6E-06 54.7 2.7 46 12-65 278-323 (531)
63 PLN03212 Transcription repress 87.3 0.61 1.3E-05 49.2 3.9 46 13-64 25-70 (249)
64 KOG0732 AAA+-type ATPase conta 85.9 0.37 8.1E-06 59.3 1.7 65 325-390 530-601 (1080)
65 KOG0457 Histone acetyltransfer 85.6 1.1 2.3E-05 50.5 4.9 50 8-64 67-116 (438)
66 PLN03091 hypothetical protein; 84.9 0.92 2E-05 51.3 4.0 45 13-63 14-58 (459)
67 PRK13923 putative spore coat p 84.0 4.1 8.9E-05 41.0 7.7 56 13-71 5-62 (170)
68 COG5114 Histone acetyltransfer 83.1 1.4 3E-05 48.2 4.3 47 11-64 61-107 (432)
69 PLN03212 Transcription repress 80.3 1.9 4.1E-05 45.6 3.9 49 13-69 78-126 (249)
70 KOG1279 Chromatin remodeling f 76.8 2 4.4E-05 49.5 3.2 49 9-65 249-297 (506)
71 PLN03091 hypothetical protein; 75.2 3.3 7.1E-05 47.1 4.2 50 13-70 67-116 (459)
72 smart00595 MADF subfamily of S 73.6 3.3 7.1E-05 35.7 3.0 29 35-71 29-57 (89)
73 PF12776 Myb_DNA-bind_3: Myb/S 70.1 5.6 0.00012 34.6 3.7 35 35-71 33-67 (96)
74 KOG0644 Uncharacterized conser 69.1 3 6.5E-05 50.5 2.3 86 310-405 74-188 (1113)
75 TIGR01557 myb_SHAQKYF myb-like 64.8 15 0.00033 30.6 5.0 46 14-64 4-52 (57)
76 KOG1827 Chromatin remodeling c 60.8 1.1 2.4E-05 52.6 -3.2 74 329-403 214-287 (629)
77 KOG0048 Transcription factor, 59.0 8.4 0.00018 39.9 3.1 44 13-63 9-53 (238)
78 KOG4282 Transcription factor G 55.1 20 0.00044 38.7 5.4 56 14-72 55-119 (345)
79 PF09111 SLIDE: SLIDE; InterP 51.3 31 0.00068 32.7 5.3 56 10-65 46-109 (118)
80 TIGR02606 antidote_CC2985 puta 47.7 22 0.00047 30.6 3.3 27 354-381 12-38 (69)
81 KOG0049 Transcription factor, 45.6 27 0.00058 41.8 4.6 57 12-72 411-467 (939)
82 PF13873 Myb_DNA-bind_5: Myb/S 44.4 43 0.00093 28.4 4.6 52 15-68 4-71 (78)
83 PF10545 MADF_DNA_bdg: Alcohol 43.3 27 0.00058 29.1 3.2 32 34-71 27-58 (85)
84 PRK04654 sec-independent trans 38.6 1.4E+02 0.003 31.4 8.0 76 21-122 8-86 (214)
85 PF05377 FlaC_arch: Flagella a 37.6 34 0.00074 28.8 2.9 31 91-121 1-31 (55)
86 PF03693 RHH_2: Uncharacterise 36.0 41 0.00089 29.8 3.3 27 354-381 15-41 (80)
87 PF04859 DUF641: Plant protein 35.0 1.1E+02 0.0023 29.9 6.2 60 61-120 56-124 (131)
88 PF12949 HeH: HeH/LEM domain; 34.2 12 0.00027 28.6 -0.2 21 88-108 2-22 (35)
89 cd02987 Phd_like_Phd Phosducin 31.3 32 0.00069 34.1 2.1 19 82-100 38-56 (175)
90 COG5509 Uncharacterized small 30.8 61 0.0013 28.0 3.3 33 83-122 18-50 (65)
91 KOG0050 mRNA splicing protein 26.3 48 0.001 38.8 2.6 46 12-64 6-51 (617)
92 KOG1924 RhoA GTPase effector D 25.3 1.2E+02 0.0027 37.4 5.7 19 105-123 184-202 (1102)
93 KOG4466 Component of histone d 25.0 79 0.0017 34.5 3.7 67 53-122 35-134 (291)
94 PF08172 CASP_C: CASP C termin 23.2 85 0.0018 33.4 3.6 31 89-119 92-122 (248)
95 PF07716 bZIP_2: Basic region 22.8 1.3E+02 0.0028 24.3 3.8 36 84-119 19-54 (54)
96 PF03962 Mnd1: Mnd1 family; I 22.4 80 0.0017 32.0 3.1 37 86-122 65-101 (188)
97 PRK04239 hypothetical protein; 22.2 1.5E+02 0.0032 28.2 4.6 18 84-101 3-20 (110)
98 PF07882 Fucose_iso_N2: L-fuco 21.9 62 0.0013 33.2 2.2 54 335-390 18-71 (181)
99 cd02988 Phd_like_VIAF Phosduci 20.5 75 0.0016 32.1 2.5 19 82-100 59-77 (192)
No 1
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6.8e-26 Score=203.53 Aligned_cols=100 Identities=23% Similarity=0.435 Sum_probs=96.3
Q ss_pred CchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 005668 311 KSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 390 (684)
Q Consensus 311 kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pd 390 (684)
..+.|+.||+.|..|+.+++|..||+...+|+||++|++||||+||++||++|.|.++. +|.+||.|||+||++||+++
T Consensus 4 ~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~ 82 (104)
T cd05507 4 WKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTA-EFQRDVLLMFQNAIMYNSSD 82 (104)
T ss_pred HHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 34789999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 005668 391 SQEYAAAQELRTLVIKEMTDM 411 (684)
Q Consensus 391 S~vykaA~eLr~lf~k~msk~ 411 (684)
+.+|.+|..|+..|.+.|.+.
T Consensus 83 s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 83 HDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999998764
No 2
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.5e-25 Score=202.62 Aligned_cols=95 Identities=22% Similarity=0.416 Sum_probs=91.1
Q ss_pred HHHHHHHHHhCcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 315 LVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 315 Ll~ILe~L~~hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
|..||+.|..|+.+++|..|||.. ++|+||+||++||||+||+.||+++.|.++. +|..||.|||.||+.||+++|.
T Consensus 10 ~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 88 (107)
T cd05497 10 LKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSAS-ECIQDFNTMFTNCYIYNKPGDD 88 (107)
T ss_pred HHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 457789999999999999999986 7999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005668 393 EYAAAQELRTLVIKEMTD 410 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk 410 (684)
+|.+|..|+.+|.++|.+
T Consensus 89 i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 89 VVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999876
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.5e-25 Score=200.45 Aligned_cols=100 Identities=24% Similarity=0.450 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHhC-cCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 005668 312 SEPLVRFLGMIRSH-RLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 388 (684)
Q Consensus 312 skpLl~ILe~L~~h-k~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~ 388 (684)
.+.|+.||+.|+.+ +.+++|..||++. ++|+||++|++||||+||++||++|.|.++. +|..||.|||+||+.||+
T Consensus 5 ~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yN~ 83 (108)
T cd05495 5 RQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPW-QYVDDVWLMFDNAWLYNR 83 (108)
T ss_pred HHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 36799999999999 9999999999986 7999999999999999999999999999998 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Q 005668 389 KSSQEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 389 pdS~vykaA~eLr~lf~k~msk~l 412 (684)
++|.+|.+|..|+.+|+++|..++
T Consensus 84 ~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 84 KTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998876
No 4
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.4e-25 Score=198.37 Aligned_cols=96 Identities=24% Similarity=0.409 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 391 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS 391 (684)
.+.|..||+.|+.|+.+++|..||+...+|+||++|++||||+||+.||+++.|.++. +|.+||.|||.||++||+++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s 80 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQ-EFLDDMKLVFSNAEKYYENGS 80 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3679999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005668 392 QEYAAAQELRTLVIKEM 408 (684)
Q Consensus 392 ~vykaA~eLr~lf~k~m 408 (684)
.+|.+|..|+++|...+
T Consensus 81 ~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 81 YVLSCMRKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998753
No 5
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.8e-25 Score=203.31 Aligned_cols=104 Identities=17% Similarity=0.314 Sum_probs=99.3
Q ss_pred CchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC-
Q 005668 311 KSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRK- 389 (684)
Q Consensus 311 kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~p- 389 (684)
.-+.|..||+.|+.|+.+++|..||+...+|+||+||++||||+||+.||.+|.|.++. +|..||.|||.||+.||++
T Consensus 6 w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~-ef~~D~~lif~Na~~yN~~~ 84 (119)
T cd05496 6 WKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPM-EFAKDVRLIFSNSKSYTPNK 84 (119)
T ss_pred HHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 44789999999999999999999999999999999999999999999999999999998 9999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhc
Q 005668 390 SSQEYAAAQELRTLVIKEMTDMLRKQ 415 (684)
Q Consensus 390 dS~vykaA~eLr~lf~k~msk~l~k~ 415 (684)
++.+|.+|..|+.+|.++|.+++...
T Consensus 85 ~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 85 RSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998753
No 6
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.2e-24 Score=199.03 Aligned_cols=101 Identities=26% Similarity=0.433 Sum_probs=97.3
Q ss_pred cCchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 005668 310 VKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRK 389 (684)
Q Consensus 310 ~kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~p 389 (684)
.....|..||+.|..++.+++|..||+...+|+||++|++||||+||++||+.|.|.++. +|..||.|||+||++||++
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~-~f~~Dv~LI~~Na~~yN~~ 90 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAE-EFLSDIQLVFSNCFLYNPE 90 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 445789999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 005668 390 SSQEYAAAQELRTLVIKEMTDM 411 (684)
Q Consensus 390 dS~vykaA~eLr~lf~k~msk~ 411 (684)
+|.+|.+|..|+.+|.++|.++
T Consensus 91 ~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 91 HTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 7
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.5e-24 Score=194.13 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..+|+.|+ |+.+++|..||+...+|+||.+|++||||+||++||++|.|.++. +|.+||.|||.||++||+++|.
T Consensus 6 ~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~Na~~YN~~~s~ 83 (99)
T cd05508 6 KLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTD-AFLADAKWILHNAIIYNGGDHK 83 (99)
T ss_pred HHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 45777888888 999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005668 393 EYAAAQELRTLVIKEM 408 (684)
Q Consensus 393 vykaA~eLr~lf~k~m 408 (684)
+|.+|..|..+|...|
T Consensus 84 i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 84 LTQAAKAIVKICEQEM 99 (99)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999987754
No 8
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.3e-24 Score=191.11 Aligned_cols=95 Identities=22% Similarity=0.367 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..||+.|..|+.+++|..||+...+|+||++|++||||+||+.||++|.|.++. +|..||.|||.||+.||++++.
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLE-EFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 568999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005668 393 EYAAAQELRTLVIKEM 408 (684)
Q Consensus 393 vykaA~eLr~lf~k~m 408 (684)
+|.+|..|+++|.++|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 9
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.91 E-value=1.4e-24 Score=246.44 Aligned_cols=106 Identities=21% Similarity=0.353 Sum_probs=100.7
Q ss_pred cccCchHHHHHHHHHHhCcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 005668 308 LAVKSEPLVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 385 (684)
Q Consensus 308 ~~~kskpLl~ILe~L~~hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~ 385 (684)
.......|..||..|+.|+++|||..|||.. .+||||+||++||||+||+.||+++.|.++. +|++||+|||+|||+
T Consensus 220 ~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~-eF~~DVRL~F~Ncm~ 298 (640)
T KOG1474|consen 220 TVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAE-EFAADVRLTFDNCMT 298 (640)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHH-HHHHHHHHHHHHHHh
Confidence 3445588999999999999999999999986 8999999999999999999999999999998 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 386 FFRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 386 FN~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
||+++++||.||..|+.+|+.+|..+...
T Consensus 299 YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~ 327 (640)
T KOG1474|consen 299 YNPEGSDVYAMAKKLQEVFEERWASMPLE 327 (640)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999998765
No 10
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4e-24 Score=189.85 Aligned_cols=97 Identities=23% Similarity=0.485 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..||+.|..|+.+++|..||+...+|+||++|++||||.||+.||..+.|.++. +|..||.|||.||+.||+++|.
T Consensus 4 ~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~yN~~~s~ 82 (101)
T cd05509 4 TQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLE-EFVADLKLIFDNCRLYNGPDTE 82 (101)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 468999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005668 393 EYAAAQELRTLVIKEMTD 410 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk 410 (684)
+|.+|..|+.+|++.|.+
T Consensus 83 ~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 83 YYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999876
No 11
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.4e-24 Score=192.20 Aligned_cols=100 Identities=25% Similarity=0.385 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhC---CCccCcHHHHHHHHHHHHHHHhhhCC
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDR---GLYSNCFQKFFRDLLLLFNNFVIFFR 388 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~---g~YsSi~~EF~rDL~LMF~NA~~FN~ 388 (684)
.+.|..||..|..|+.+++|..||+. .+|+||++|++||||+||++||+. +.|.++. +|.+||.|||+||+.||+
T Consensus 6 ~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~-~f~~D~~li~~Na~~yN~ 83 (109)
T cd05502 6 QRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPE-EFVADVRLMFKNCYKFNE 83 (109)
T ss_pred HHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 46799999999999999999999998 899999999999999999999998 6999998 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Q 005668 389 KSSQEYAAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 389 pdS~vykaA~eLr~lf~k~msk~l~ 413 (684)
++|.++.+|..|+.+|.+.|.+++|
T Consensus 84 ~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 84 EDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999986
No 12
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=8.6e-24 Score=192.98 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHhC-cCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 005668 313 EPLVRFLGMIRSH-RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 391 (684)
Q Consensus 313 kpLl~ILe~L~~h-k~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS 391 (684)
+.|..||+.|+.| +++++|..||+...+|+||++|++||||+||++||.++.|.++. +|.+||.|||+||+.||++++
T Consensus 10 ~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~Li~~N~~~yN~~~s 88 (112)
T cd05510 10 ESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKA-EFVDDLNLIWKNCLLYNSDPS 88 (112)
T ss_pred HHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 5799999999999 99999999999999999999999999999999999999999998 999999999999999999865
Q ss_pred -HHHHHHHHHHHHHHHHHHHHh
Q 005668 392 -QEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 392 -~vykaA~eLr~lf~k~msk~l 412 (684)
.+|.+|..|+++|.+.|..+.
T Consensus 89 ~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 89 HPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 788999999999999988753
No 13
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.90 E-value=9e-24 Score=192.75 Aligned_cols=100 Identities=24% Similarity=0.305 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC--
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS-- 390 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pd-- 390 (684)
.-|..||+.|+.|+.+++|..||+...+|+||++|++||||.||+.||+++.|.++. +|..||.|||+||+.||+++
T Consensus 6 ~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN~~~s~ 84 (112)
T cd05528 6 LFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAK-DFLKDIDLIVTNALEYNPDRDP 84 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHH-HHHHHHHHHHHHHHHHCCCCCc
Confidence 358899999999999999999999999999999999999999999999999999998 99999999999999999995
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHhh
Q 005668 391 --SQEYAAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 391 --S~vykaA~eLr~lf~k~msk~l~ 413 (684)
+.++.+|..|+++|.+++.+.+|
T Consensus 85 ~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 85 ADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCC
Confidence 69999999999999999998874
No 14
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.3e-23 Score=185.78 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhCcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 390 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pd 390 (684)
+.|..||+.|+.|+.+++|..||+.. .+|+||++|++||||+||+.||+++.|.++. +|..||.|||.||+.||+++
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 3 KQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPE-EFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999999976 7999999999999999999999999999998 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005668 391 SQEYAAAQELRTLVIKEM 408 (684)
Q Consensus 391 S~vykaA~eLr~lf~k~m 408 (684)
|.+|.+|..|+.+|++++
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998763
No 15
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=2e-23 Score=190.14 Aligned_cols=100 Identities=20% Similarity=0.316 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHH
Q 005668 314 PLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQE 393 (684)
Q Consensus 314 pLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~v 393 (684)
-|..||+.|+.|+.+++|..||++..+|+||++|++||||+||++||.++.|.++. +|.+||.|||.||+.||+++|.+
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN~~~s~i 82 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSRE-EFLEDIELIVDNSVLYNGPDSVY 82 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHH
Confidence 47889999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 005668 394 YAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 394 ykaA~eLr~lf~k~msk~l~k 414 (684)
|.+|..|+.+|...|..+..+
T Consensus 83 ~~~A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 83 TKKAKEMLELAEELLAEREEK 103 (112)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999988654
No 16
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.5e-23 Score=187.42 Aligned_cols=93 Identities=16% Similarity=0.301 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
+.|..||+.|..++.+++|..||+...+|+||++|++||||+||++||+++.|.++. +|..||.|||.||+.||+++|.
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05513 4 KALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIE-EFKDDFKLMCENAMKYNKPDTI 82 (98)
T ss_pred HHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 457889999999999999999999989999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005668 393 EYAAAQELRTLVIK 406 (684)
Q Consensus 393 vykaA~eLr~lf~k 406 (684)
+|.+|..|.+...+
T Consensus 83 ~~~~A~~L~~~~~~ 96 (98)
T cd05513 83 YYKAAKKLLHSGMK 96 (98)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999876543
No 17
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.4e-23 Score=187.26 Aligned_cols=90 Identities=23% Similarity=0.332 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..+|+.|..|+.+++|..||+...+|+||++|++||||+||++||.++.|.++. +|..||.|||.||+.||+++|.
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05512 4 VLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLE-DFEADFNLIINNCLAYNAKDTI 82 (98)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 468899999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005668 393 EYAAAQELRTL 403 (684)
Q Consensus 393 vykaA~eLr~l 403 (684)
+|.+|..|+..
T Consensus 83 ~~~~A~~l~~~ 93 (98)
T cd05512 83 FYRAAVRLRDQ 93 (98)
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2e-23 Score=188.64 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhCcC------CcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSHRL------SSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~hk~------a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..||+.|..+.. +++|..||+...+|+||++|++||||+||+.||.+|.|.++. +|..||.|||.||+.|
T Consensus 4 ~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~y 82 (107)
T cd05516 4 KKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLE-DLEKDVMLLCQNAQTF 82 (107)
T ss_pred HHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 578899999988876 899999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMTD 410 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~msk 410 (684)
|+++|.+|.+|..|+.+|...|++
T Consensus 83 N~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 83 NLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999875
No 19
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.3e-23 Score=185.74 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHh---CcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 312 SEPLVRFLGMIRS---HRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 312 skpLl~ILe~L~~---hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
.+.|..||+.|.. ++.+++|..||++. .+|+||++|++||||+||+.||+++.|.++. +|..||+|||.||+.|
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~-ef~~D~~li~~N~~~y 80 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAK-EFERDVRLIFKNCYTF 80 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3578899999987 46799999999987 9999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIKEM 408 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~m 408 (684)
|+++|.+|.+|..|+.+|+++|
T Consensus 81 n~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 81 NPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998864
No 20
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2e-23 Score=187.71 Aligned_cols=95 Identities=26% Similarity=0.410 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHhCc------CCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 005668 312 SEPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 385 (684)
Q Consensus 312 skpLl~ILe~L~~hk------~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~ 385 (684)
++||..||+.|+.+. .+++|..||+...+|+||++|++||||+||+.||.++.|.++. +|..||.|||.||+.
T Consensus 2 ~~~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~ 80 (103)
T cd05520 2 SNPLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLE-ELEADLNLMFENAKR 80 (103)
T ss_pred CchHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHH
Confidence 689999999998664 6899999999999999999999999999999999999999998 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 005668 386 FFRKSSQEYAAAQELRTLVIKE 407 (684)
Q Consensus 386 FN~pdS~vykaA~eLr~lf~k~ 407 (684)
||+++|.+|.+|..|+.+|..+
T Consensus 81 yN~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 81 YNVPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999764
No 21
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.2e-23 Score=185.47 Aligned_cols=96 Identities=17% Similarity=0.294 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHhCcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRK 389 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~p 389 (684)
.+.|+.||+.|..++.+++|..||++. .+|+||++|++||||+||+.||.++.|.++. +|..||.|||.||+.||++
T Consensus 6 ~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~ 84 (103)
T cd05500 6 HKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVE-EFTADFNLMVDNCLTFNGP 84 (103)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 367999999999999999999999975 7999999999999999999999999999998 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 005668 390 SSQEYAAAQELRTLVIKEM 408 (684)
Q Consensus 390 dS~vykaA~eLr~lf~k~m 408 (684)
+|.++.+|..|+..|++.|
T Consensus 85 ~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 85 EHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998864
No 22
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.3e-23 Score=183.55 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhC---cCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 005668 313 EPLVRFLGMIRSH---RLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFF 387 (684)
Q Consensus 313 kpLl~ILe~L~~h---k~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN 387 (684)
+.|..||+.|..+ +.+++|..||+.. .+|+||++|++||||+||+.||.++.|.++. +|..||+|||.||+.||
T Consensus 3 ~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yn 81 (102)
T cd05498 3 KFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQ-EFAADVRLMFSNCYKYN 81 (102)
T ss_pred hHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 5689999999999 8999999999986 6999999999999999999999999999998 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005668 388 RKSSQEYAAAQELRTLVIKEM 408 (684)
Q Consensus 388 ~pdS~vykaA~eLr~lf~k~m 408 (684)
+++|.+|.+|..|+++|++++
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 23
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.7e-22 Score=184.47 Aligned_cols=101 Identities=25% Similarity=0.346 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHh------CcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRS------HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~------hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..||+.|+. ++.+.+|.++++...+|+||++|++||||+||++||.++.|.++. +|..||.|||+||+.|
T Consensus 5 ~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~y 83 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVD-DLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 568899999985 455679999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
|+++|.+|.+|..|+++|.+.+.++++.
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999888753
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=2.1e-22 Score=181.31 Aligned_cols=95 Identities=23% Similarity=0.413 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHh------CcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRS------HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~------hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..||+.|.. |+.+++|..||+..++|+||++|++||||+||++||.++.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~l~~~Na~~y 81 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLD-DMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 567788888875 456899999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIKEM 408 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~m 408 (684)
|+++|.+|.+|..|+.+|....
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 25
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.3e-22 Score=179.93 Aligned_cols=94 Identities=20% Similarity=0.354 Sum_probs=88.6
Q ss_pred hHHHHHHHHHH------hCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIR------SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~------~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..||+.|. .++.+++|..|++...+|+||++|++||||+||++||+.+.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 81 (103)
T cd05519 3 AAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLE-EFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 46888999988 4556999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIKE 407 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~ 407 (684)
|+++|.+|.+|..|+.+|...
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999865
No 26
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.9e-22 Score=179.92 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 391 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS 391 (684)
...|-.||-.|+.++.+++|..+ +..+|+||++|++||||+||+.||.++.|.++. +|.+||+|||+||+.||+++
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~-ef~~D~~Lif~N~~~yN~~~- 79 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVE-GFVRDMRLIFHNHKLFYKDD- 79 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHcCCC-
Confidence 45688999999999999999763 458999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 005668 392 QEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 392 ~vykaA~eLr~lf~k~msk~l 412 (684)
.+|.+|..|+..|++.|..++
T Consensus 80 ~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 80 DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
No 27
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=5.3e-22 Score=175.16 Aligned_cols=97 Identities=29% Similarity=0.492 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..|++.|..|+.+++|..||+...+|+||.+|.+||||.||++||+++.|.++. +|..||.|||.||+.||++++.
T Consensus 10 ~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~~n~~~s~ 88 (107)
T smart00297 10 SLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVE-EFVADVQLMFSNAKTYNGPDSE 88 (107)
T ss_pred HHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 457888888999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005668 393 EYAAAQELRTLVIKEMTD 410 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk 410 (684)
+|.+|..|+.+|...|.+
T Consensus 89 ~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 89 VYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999875
No 28
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.3e-22 Score=184.76 Aligned_cols=98 Identities=22% Similarity=0.276 Sum_probs=93.4
Q ss_pred CchHHHHHHHHHH---hCcCCcccccccCcc-ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 311 KSEPLVRFLGMIR---SHRLSSHFERRLRSQ-ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 311 kskpLl~ILe~L~---~hk~a~pF~~PVD~q-e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
....|+.+|..|. .++.+++|..||+.. .+|+||++|++||||+||++||.++.|.++. +|..||.|||.||+.|
T Consensus 25 ~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~Li~~Na~~y 103 (128)
T cd05529 25 ERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLE-ALRHDVRLILSNAETF 103 (128)
T ss_pred HHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3466889999999 999999999999999 9999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMT 409 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~ms 409 (684)
|+++|.+|.+|..|+.+|...|.
T Consensus 104 N~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 104 NEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998875
No 29
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=9.1e-22 Score=177.15 Aligned_cols=94 Identities=21% Similarity=0.370 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHh------CcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRS------HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~------hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..|++.|.. +..+.+|..+|+...+|+||++|++||||.||+.||.++.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~y 81 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEE-ELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 456677777654 467899999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIKE 407 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~ 407 (684)
|+++|.+|.+|..|+.+|.++
T Consensus 82 N~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998753
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.1e-21 Score=177.57 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHhC------cCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~h------k~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..||+.|... ..+++|.++++...+|+||++|++||||.||+.||.+|.|.++. +|..||.|||.||+.|
T Consensus 5 ~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~-ef~~D~~l~f~Na~~y 83 (106)
T cd05525 5 QVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPE-AFDSDMLKVFRNAEKY 83 (106)
T ss_pred HHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4577888888754 45799999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIKE 407 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~ 407 (684)
|+++|.+|.+|..|+++|.+.
T Consensus 84 n~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 84 YGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999763
No 31
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=1.8e-21 Score=175.13 Aligned_cols=93 Identities=24% Similarity=0.365 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHhC------cCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~h------k~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..||+.|..+ +.+++|..+++...+|+||++|++||||.||++||..+.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~y 81 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIE-DMEKDLDLMVKNAKTF 81 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4577888888765 45799999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIK 406 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k 406 (684)
|+++|.+|.+|..|+.+|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999975
No 32
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.84 E-value=5.9e-21 Score=162.34 Aligned_cols=94 Identities=27% Similarity=0.412 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHhC--cCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 005668 313 EPLVRFLGMIRSH--RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 390 (684)
Q Consensus 313 kpLl~ILe~L~~h--k~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pd 390 (684)
..|..|++.|..+ +.+++|..||+...+|+||.+|++||||.+|+.||..+.|.++. +|..||.|||.||+.||+++
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLE-EFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 4688899999999 99999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005668 391 SQEYAAAQELRTLVIKE 407 (684)
Q Consensus 391 S~vykaA~eLr~lf~k~ 407 (684)
+.+|.+|..|+.+|...
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=6.7e-21 Score=171.43 Aligned_cols=93 Identities=26% Similarity=0.366 Sum_probs=85.2
Q ss_pred HHHHHHHHHHh------CcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 005668 314 PLVRFLGMIRS------HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFF 387 (684)
Q Consensus 314 pLl~ILe~L~~------hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN 387 (684)
.|..||+.|.. ++.+++|..+++...+|+||++|++||||+||+.||..+.|.++. +|..||.|||.||+.||
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yn 83 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFD-QFLNDLNLMFENAKLYN 83 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 45556666654 578999999999999999999999999999999999999999998 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 005668 388 RKSSQEYAAAQELRTLVIKE 407 (684)
Q Consensus 388 ~pdS~vykaA~eLr~lf~k~ 407 (684)
++++.+|.+|..|+..|...
T Consensus 84 ~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 84 ENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999763
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.84 E-value=8.3e-21 Score=160.86 Aligned_cols=84 Identities=27% Similarity=0.445 Sum_probs=79.6
Q ss_pred HHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHH
Q 005668 315 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEY 394 (684)
Q Consensus 315 Ll~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vy 394 (684)
|..||+.|..|+.+++|..||+...+|+|+++|++||||.||+.||++|.|.++. +|..||.|||.||+.||+++|.+|
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~-~f~~Dv~~i~~Na~~yn~~~s~~~ 79 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIE-EFEADVRLIFQNARRYNPPDSPIY 79 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHH-HHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHH-HHHHHHHHHHHHHHHHCCCcCHHH
Confidence 6789999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHH
Q 005668 395 AAAQE 399 (684)
Q Consensus 395 kaA~e 399 (684)
.+|.+
T Consensus 80 ~~A~~ 84 (84)
T PF00439_consen 80 KAAEK 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99974
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=3.7e-20 Score=167.74 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhC------cCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~h------k~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..||+.|+.. +.+.+|..+++...+|+||++|++||||+||++||.. |.++. +|..||.|||.||+.|
T Consensus 4 ~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~-ef~~D~~li~~Na~~y 80 (106)
T cd05521 4 KKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQ-EFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHH
Confidence 4678888888754 4467999999999999999999999999999999998 99998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMT 409 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~ms 409 (684)
|+++|.+|.+|..|+.+|.+.|.
T Consensus 81 N~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 81 NTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988763
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=8.7e-20 Score=166.44 Aligned_cols=96 Identities=22% Similarity=0.352 Sum_probs=86.3
Q ss_pred HHHHHHHHHh-CcCCcccccccCc-----cccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 005668 315 LVRFLGMIRS-HRLSSHFERRLRS-----QESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 388 (684)
Q Consensus 315 Ll~ILe~L~~-hk~a~pF~~PVD~-----qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~ 388 (684)
|-.++..++. -+-++||+.||.+ ..+|+||.+|++||||+||++||++|.|.++. ||.+||.|||+||++||+
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~N~~~yNg 83 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLE-EFKADALLLLHNTAIFHG 83 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 4556667766 4668999999963 25999999999999999999999999999998 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 005668 389 KSSQEYAAAQELRTLVIKEMTDM 411 (684)
Q Consensus 389 pdS~vykaA~eLr~lf~k~msk~ 411 (684)
++|.+|.+|..|.+.+...|.++
T Consensus 84 ~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 84 ADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888765
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.69 E-value=9.8e-17 Score=146.85 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhCc------CCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~hk------~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..|++.|+.|. .+.+|.+.+. ..++||.+|+.||||.+|++||.+|.|.++. +|..||.|||+||..|
T Consensus 6 ~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld-~~~~D~~lmf~NAr~y 82 (110)
T cd05526 6 ELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLD-KFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHH-HHHHHHHHHHHHHHHh
Confidence 46888999999886 4788988887 4578889999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~msk~l 412 (684)
|.++|.+|.+|.+|+.+|.+.-.++.
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998766553
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.66 E-value=7.4e-17 Score=195.34 Aligned_cols=97 Identities=23% Similarity=0.357 Sum_probs=93.8
Q ss_pred HHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHH
Q 005668 315 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEY 394 (684)
Q Consensus 315 Ll~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vy 394 (684)
|..||..|..|..+|||+.||+...+|+||+||++||||.||+.||..|.|.+.. +|..||.|||.||.+||.+ +.++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~e-ef~~Di~lvf~Nc~~yN~~-s~i~ 1383 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPE-EFATDIELVFDNCETYNED-SEIG 1383 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHH-HHHHHHHHHHHHHHHhccc-hhhh
Confidence 8899999999999999999999999999999999999999999999999999998 9999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 005668 395 AAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 395 kaA~eLr~lf~k~msk~l~ 413 (684)
.+...|+.+|++.+...++
T Consensus 1384 ~ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1384 RAGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred hhcchHHHHHHHHHHhhcC
Confidence 9999999999997777664
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.66 E-value=9.2e-17 Score=171.97 Aligned_cols=90 Identities=29% Similarity=0.442 Sum_probs=85.9
Q ss_pred hCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 005668 324 SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTL 403 (684)
Q Consensus 324 ~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~eLr~l 403 (684)
.+...++|..+|+...+|+||.||+.||||.||+++|..+.|.++. +|..||+|||+||..||.+++.+|.+|..|+..
T Consensus 162 ~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~e-ef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~ 240 (371)
T COG5076 162 GRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFE-EFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKY 240 (371)
T ss_pred ccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHH-HHHHHHHHHHHhhhhccCCCcchhhhhHHHHHH
Confidence 4567899999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 005668 404 VIKEMTDMLRK 414 (684)
Q Consensus 404 f~k~msk~l~k 414 (684)
|...|..+...
T Consensus 241 ~~~~i~~~~~~ 251 (371)
T COG5076 241 FLKLIEEIPEE 251 (371)
T ss_pred HHHHHHhcccc
Confidence 99999987754
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.49 E-value=1.6e-14 Score=164.80 Aligned_cols=100 Identities=22% Similarity=0.442 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHH
Q 005668 314 PLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQE 393 (684)
Q Consensus 314 pLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~v 393 (684)
.+..||..|..|.++|||.+||+..++|+||++|++||||.||+.+|..+.|..+. .|.+|+.+||+||.+||+.++.+
T Consensus 610 ~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~-~f~ad~~~vf~ncr~yn~~~~~y 688 (720)
T KOG1472|consen 610 AIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVE-LFMADVVRVFANCRMYNGSDTQY 688 (720)
T ss_pred HHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHH-HHHHHHHHHHhhhhccCCccchh
Confidence 36678899999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 005668 394 YAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 394 ykaA~eLr~lf~k~msk~l~k 414 (684)
|+.|..|..+|...|...+..
T Consensus 689 ~k~~~~le~~~~~k~~~~i~~ 709 (720)
T KOG1472|consen 689 YKCAQALEKFFLFKLNELILR 709 (720)
T ss_pred eecccchhhhhcchhhhhhhh
Confidence 999999999999999888654
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.10 E-value=5.5e-11 Score=109.45 Aligned_cols=77 Identities=9% Similarity=-0.013 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhCcCCcccccccCc--cccchhhhhhcCCCCHHHHHHHHhCCCccC------cHHHHHHHHHHHHHHHh
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRS--QESERYKKLVRQHIDLRTIQSRLDRGLYSN------CFQKFFRDLLLLFNNFV 384 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~--qe~PdYyeIIK~PMDLsTIKkKLe~g~YsS------i~~EF~rDL~LMF~NA~ 384 (684)
+.|+.+|..+..|+.+|||..||++ ..+|+||++|++||||+||+.+|..+.|.. ....+..++..++.||.
T Consensus 6 ~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (114)
T cd05494 6 ERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRS 85 (114)
T ss_pred HHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccC
Confidence 4577777777888899999999999 799999999999999999999999874422 22245556666666666
Q ss_pred hhCCC
Q 005668 385 IFFRK 389 (684)
Q Consensus 385 ~FN~p 389 (684)
-||..
T Consensus 86 ~~~~~ 90 (114)
T cd05494 86 PSNIY 90 (114)
T ss_pred ccccc
Confidence 55553
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.06 E-value=1.7e-10 Score=136.90 Aligned_cols=100 Identities=22% Similarity=0.347 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
+.|..+|+.|...+...+|..|||..++|+|.+||++||||.||+.++.++.|.++. +|..|+.||+.||+.||..++.
T Consensus 568 kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle-~ieed~~l~~~nc~~yn~~dtv 646 (1051)
T KOG0955|consen 568 KLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLE-PIEEDVNLIVSNCMEYNAKDTV 646 (1051)
T ss_pred HHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhh-HHHHhHhHhHhHHHHhhccCee
Confidence 445578888888999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 005668 393 EYAAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk~l~ 413 (684)
+|.+|..|++++...+.+...
T Consensus 647 ~~r~av~~~e~~~~~~~~ark 667 (1051)
T KOG0955|consen 647 YYRAAVRLRELIKKDFRNARK 667 (1051)
T ss_pred hHhhhHHHHhhhhhHHHhccc
Confidence 999999999999888877664
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.97 E-value=5.3e-10 Score=133.07 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=83.6
Q ss_pred HHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 005668 320 GMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQE 399 (684)
Q Consensus 320 e~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~e 399 (684)
..+..-+.+|+|+.||+...+|+||.+|++||||.||.+++..+.|.+.. ||++|+.||+.||..||+..+.+...|.+
T Consensus 1392 s~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~-e~l~dv~~i~~n~~~~ng~e~~y~~k~~k 1470 (1563)
T KOG0008|consen 1392 SQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRS-EFLDDVNLIYVNSVEYNGAESAYTKKARK 1470 (1563)
T ss_pred HHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHH-HHhhhhHhhcccceeecCccccccHHHHH
Confidence 34556688999999999999999999999999999999999999999998 99999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhh
Q 005668 400 LRTLVIKEMTDMLR 413 (684)
Q Consensus 400 Lr~lf~k~msk~l~ 413 (684)
+-.+....|.+.+.
T Consensus 1471 ~~ev~~~~~~e~~~ 1484 (1563)
T KOG0008|consen 1471 IGEVGLANLLEYIE 1484 (1563)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777666655443
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.83 E-value=5e-09 Score=97.54 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 005668 349 QHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 391 (684)
Q Consensus 349 ~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS 391 (684)
.||||+||++||.+|+|.++. +|++||.|||.||..||.++.
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~-~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPK-DFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHhCCHHH
Confidence 589999999999999999998 999999999999999998743
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.77 E-value=8.9e-09 Score=122.95 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=94.6
Q ss_pred cccCchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhC
Q 005668 308 LAVKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFF 387 (684)
Q Consensus 308 ~~~kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN 387 (684)
.++.+..|..|++.+...++..+|..||+..++++||.||..||||.||++.|....|.+-. .|+.|+.|||.|..+||
T Consensus 1259 ~V~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~-~fle~~~~~~~ns~~yn 1337 (1563)
T KOG0008|consen 1259 SVSLSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESRE-HFLEELPLIVSNSTKYN 1337 (1563)
T ss_pred eeecccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHH-HHHHHhHHHhhchhhhc
Confidence 45555667888899999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhh
Q 005668 388 RKSSQEYAAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 388 ~pdS~vykaA~eLr~lf~k~msk~l~ 413 (684)
++.+.+..++..|..+....|...-.
T Consensus 1338 g~~~~~t~~~q~mls~~~~~~~eked 1363 (1563)
T KOG0008|consen 1338 GPLASLTRQQQSMLSLCFEKLKEKED 1363 (1563)
T ss_pred CchHHHHHHHHHHHHHHHHhhchhHH
Confidence 99999999999888777666654433
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.76 E-value=2.5e-08 Score=113.43 Aligned_cols=95 Identities=24% Similarity=0.337 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHhCc------CCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~hk------~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
..+..||..|+.+. ....|.+..+....|.||.+|-+||.|..|++||..+.|.++. .|+.|++|||.||..|
T Consensus 55 ~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~-~f~~D~~lm~ena~~~ 133 (629)
T KOG1827|consen 55 PKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLS-FFQLDFLLMTENARLY 133 (629)
T ss_pred HHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHh
Confidence 44666666666553 4678999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 005668 387 FRKSSQEYAAAQELRTLVIKEM 408 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~m 408 (684)
|.+++.+|.++..|...|....
T Consensus 134 n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 134 NRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred cCcchhhhhhhhhhhcchhhhh
Confidence 9999999999999999988755
No 47
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.74 E-value=1.1e-08 Score=119.90 Aligned_cols=101 Identities=18% Similarity=0.327 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhC------cCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~h------k~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
.++..|+.....+ .....|........+|+||.||+.||+|..|.++|.++.|.++. ++..||.+||+||.+|
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLK-ELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHH-HHHHHHHhhcchhhhh
Confidence 6788888887744 45789999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
|..+|.+|..|..|+.+|......+...
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~~~~~~~ 1133 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSARQEISKE 1133 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhHHHHhcc
Confidence 9999999999999999999888887743
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.54 E-value=1.8e-08 Score=115.96 Aligned_cols=93 Identities=20% Similarity=0.341 Sum_probs=85.9
Q ss_pred HHHhCcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q 005668 321 MIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQ 398 (684)
Q Consensus 321 ~L~~hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~ 398 (684)
.+..|.++|+|..||+.. ..|+||.+|++|||+.||..+|++.+|.+.. +..+||..+|.||+.||...-.++.++.
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~-~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSAS-ECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHh-hhhhhccccccchhcccCCccchhhccc
Confidence 345789999999999964 7899999999999999999999998899997 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 005668 399 ELRTLVIKEMTDMLRK 414 (684)
Q Consensus 399 eLr~lf~k~msk~l~k 414 (684)
.+..+|.+.+......
T Consensus 82 ~~~~~~~~~~~~~~~~ 97 (640)
T KOG1474|consen 82 SLEKLFPKKLRSMPSD 97 (640)
T ss_pred cchhhccccccccccc
Confidence 9999998888777765
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.45 E-value=1.2e-07 Score=109.48 Aligned_cols=72 Identities=21% Similarity=0.403 Sum_probs=67.1
Q ss_pred hCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q 005668 324 SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAA 396 (684)
Q Consensus 324 ~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vyka 396 (684)
.+.++++|..+|+...+|+||.||+-||||.|+-.++..+.|.+.. +|..||.+||.||..||...+.....
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~-~fv~d~~~~~~n~~~~n~ee~~~~~~ 371 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKE-EFVNDLMLIWRNCEKYNSEESHGLIE 371 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchh-HHHHHHHHHHhcchhhccccchhhhh
Confidence 4899999999999999999999999999999999999999999998 99999999999999999987654433
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.43 E-value=4.5e-08 Score=105.62 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=88.1
Q ss_pred HHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHH
Q 005668 315 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEY 394 (684)
Q Consensus 315 Ll~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vy 394 (684)
+-.+|..+.....-..|..||...-.|+|.+||..|||+.||+.+|+-+.|.++. +|..|..||++||++||-..+.++
T Consensus 24 ~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~-~m~~d~kl~~~na~~yn~~~Tv~~ 102 (418)
T KOG1828|consen 24 AEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLS-QMEFDRKLPDGNATLYNLHPTVPI 102 (418)
T ss_pred HHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceech-hhhhhhcccccchhhhhcCCcccc
Confidence 4456666667777888999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 005668 395 AAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 395 kaA~eLr~lf~k~msk~l~ 413 (684)
.+|..|..+....+...+.
T Consensus 103 ~aaKrL~~v~~~~~qe~~l 121 (418)
T KOG1828|consen 103 VAAKRLCPVRLGMTQERLL 121 (418)
T ss_pred ccccccchhhcchhhHHHH
Confidence 9999999887776665554
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.13 E-value=1.7e-06 Score=93.70 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=78.1
Q ss_pred chHHHHHH-HHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 005668 312 SEPLVRFL-GMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 390 (684)
Q Consensus 312 skpLl~IL-e~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pd 390 (684)
.+.|+.+. .++.......+|..++....+|.|.-+|++|+|+.|+..++.++.|.| . +|..|+.|||.||++||.+.
T Consensus 209 ~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~-~f~~D~kl~~l~amT~gehs 286 (418)
T KOG1828|consen 209 GQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-L-SFTQDRKLIALKAVTNGEHS 286 (418)
T ss_pred cHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-h-hhhcccchhhHHHHhcCCcc
Confidence 34444443 456666678899999999999999999999999999999999999999 5 99999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 005668 391 SQEYAAAQELRT 402 (684)
Q Consensus 391 S~vykaA~eLr~ 402 (684)
..+|..|..+..
T Consensus 287 k~yyelank~lh 298 (418)
T KOG1828|consen 287 KSYYELANKQLH 298 (418)
T ss_pred hHHHHHHHhhhh
Confidence 999999987654
No 52
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.74 E-value=4.5e-05 Score=59.66 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=39.7
Q ss_pred ccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 14 QQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
+.|..-|+.+|.-||..||..+|+.||..|- ...|+..|+.+|..|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~------~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP------GGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS------SSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC------CCCCHHHHHHHHHhh
Confidence 4699999999999999999999999999998 234579999999876
No 53
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.42 E-value=0.00022 Score=53.32 Aligned_cols=48 Identities=31% Similarity=0.690 Sum_probs=42.2
Q ss_pred ccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhh
Q 005668 14 QQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRR 68 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R 68 (684)
..|..-|+.+|..+|..||..+|..||..|..| |+..|+.+|..|.++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~r-------t~~~~~~~~~~~~~~ 49 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGR-------TAEQCRERWNNLLKP 49 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCC-------CHHHHHHHHHHHcCC
Confidence 469999999999999999999999999998744 679999999987653
No 54
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.37 E-value=5.3e-05 Score=82.05 Aligned_cols=94 Identities=27% Similarity=0.366 Sum_probs=86.6
Q ss_pred HHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHH
Q 005668 318 FLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAA 397 (684)
Q Consensus 318 ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA 397 (684)
++..+..+..+|+|..++.....|+|+++|..+|++.|++-+|..+.|.... +|.+|..++|.||..||.....++..+
T Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
T COG5076 271 LITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEE-TFVRDAKLFFDNCVMYNGEVTDYYKNA 349 (371)
T ss_pred cccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCcc-ccccccchhhhcccccchhhhhhhhhc
Confidence 3344467888999999999999999999999999999999999999999996 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005668 398 QELRTLVIKEMTDML 412 (684)
Q Consensus 398 ~eLr~lf~k~msk~l 412 (684)
..+..+|...+....
T Consensus 350 ~~~~~~~~~~~~~~~ 364 (371)
T COG5076 350 NVLEDFVIKKTRLIR 364 (371)
T ss_pred cchhhhHhhhhhhhh
Confidence 999999988877654
No 55
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=96.89 E-value=0.0012 Score=48.63 Aligned_cols=44 Identities=36% Similarity=0.800 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 15 QWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 15 ~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
.|..-|+-+|-.+|..||..+|+.||..|..| |+..|+.+|..|
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~r-------s~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGR-------TPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCC-------CHHHHHHHHHHh
Confidence 48889999999999999999999999998765 578999999765
No 56
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.18 E-value=0.0074 Score=57.78 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHhhhc
Q 005668 350 HIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLVIKEMTDMLRKQ 415 (684)
Q Consensus 350 PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~eLr~lf~k~msk~l~k~ 415 (684)
|.||.-+++||+.|.|.++. +|.+||..|++=++.--+....+-.+-..+..+|.+.|.+.++-+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~-~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf 123 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVL-DFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWF 123 (131)
T ss_pred cccHHHHHHHHhccceehHH-HHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccc
Confidence 88999999999999999998 999999999998887766666666666678889999999988753
No 57
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=95.80 E-value=0.0086 Score=48.41 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH-HHhhhcC
Q 005668 16 WGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE-IRRRFTV 71 (684)
Q Consensus 16 WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~-l~~R~~~ 71 (684)
|.-=|+-+|.-+|..||. +|..||..|-.| |+..|+.||.. |+..++.
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~R-------t~~~~~~r~~~~l~~~~~~ 49 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNR-------TPKQCRNRWRNHLRPKISR 49 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS--------HHHHHHHHHHTTSTTSTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcC-------CHHHHHHHHHHHCcccccC
Confidence 566688999999999995 899999988434 57999999999 8765554
No 58
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.67 E-value=0.1 Score=51.64 Aligned_cols=101 Identities=28% Similarity=0.426 Sum_probs=65.2
Q ss_pred cccchhhHHHHHHHHHhhcc----C--CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhhhcCCC----------C-
Q 005668 13 QQQWGTLEELLLACAVNRHG----T--RSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI-RRRFTVKN----------G- 74 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHG----t--~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l-~~R~~~~~----------~- 74 (684)
...|..=|.||||..|+||= | ++++-|+.-| +| |+..|+.+|+-. +.+|.... +
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~R-------TsAACGFRWNs~VRkqY~~~i~~AKkqRk~~~~ 75 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NR-------TAAACGFRWNAYVRKQYEEAIELAKKQRKELKR 75 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cc-------cHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45799999999999999993 2 4677777554 34 556666665542 33454320 0
Q ss_pred --C--CcCCccchHHHHHHH--HHHHHHHHHHhhccchhhHHHHHHHHHHHHh
Q 005668 75 --A--ESTSLVPLVDQLRQI--RVQELRAEVQRRDVSIVSLELKVKRLEEERE 121 (684)
Q Consensus 75 --~--~~~~~~~W~EELRKl--RVAELRRever~d~SIgSLqsKvk~L~eere 121 (684)
. .-.+++..|..|... .+..|+-|.++-..-+-.||.+++.|+.+-+
T Consensus 76 ~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~ 128 (161)
T TIGR02894 76 EAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELE 128 (161)
T ss_pred CcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 123456667666654 4566777777777777788888888887754
No 59
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=91.71 E-value=0.21 Score=42.88 Aligned_cols=71 Identities=24% Similarity=0.486 Sum_probs=41.1
Q ss_pred cchhhHHHHHHHHHhhcc-------------CCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcCCCCCC--cCC
Q 005668 15 QWGTLEELLLACAVNRHG-------------TRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTVKNGAE--STS 79 (684)
Q Consensus 15 ~WGTwEELLLacAV~RHG-------------t~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~~~~~~--~~~ 79 (684)
.|..=|-++|.-++.-|. ..-|..||.+|+.+-. ..|+..|+.||..|.++|-.-.... ...
T Consensus 3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~---~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~~~ 79 (90)
T PF13837_consen 3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGY---NRTPEQCRNKWKNLKKKYKKIKDRNKKSGS 79 (90)
T ss_dssp SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHCSSSSSS----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 466666666665555421 1269999999998743 4699999999999999998754321 112
Q ss_pred ccchHHHHH
Q 005668 80 LVPLVDQLR 88 (684)
Q Consensus 80 ~~~W~EELR 88 (684)
.-+||++|-
T Consensus 80 ~w~~f~~md 88 (90)
T PF13837_consen 80 SWPYFDEMD 88 (90)
T ss_dssp S---TT---
T ss_pred cCcCHHHHh
Confidence 335677663
No 60
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=90.05 E-value=0.29 Score=57.24 Aligned_cols=52 Identities=35% Similarity=0.800 Sum_probs=44.6
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHH-HHHhhhcC
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFN-EIRRRFTV 71 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~-~l~~R~~~ 71 (684)
.+.|.|=|..+|.|||.|+|..+|--|-.+|=.|+- .-||.+|. .|++|--.
T Consensus 360 hg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSd-------sQcR~RY~nvL~~s~K~ 412 (939)
T KOG0049|consen 360 HGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSD-------SQCRERYTNVLNRSAKV 412 (939)
T ss_pred CCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccH-------HHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999999999888864 68999996 46766543
No 61
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=89.23 E-value=0.3 Score=58.54 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=53.9
Q ss_pred hhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 005668 345 KLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLVIKEM 408 (684)
Q Consensus 345 eIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~eLr~lf~k~m 408 (684)
.----|..|..|+.+|++.+|.++. .|.+|+-.|..||-+|++.+-.+...+..|..+|...+
T Consensus 1048 ~~fpvpls~evi~~rlEn~yYrs~e-~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1048 NRFPVPLSLEVIRSRLENNYYRSQE-ALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCCCcccHHHHHHHHHhhhhhhhH-hhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 3345688999999999999999998 99999999999999999999877777777777765443
No 62
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=87.90 E-value=0.35 Score=54.73 Aligned_cols=46 Identities=26% Similarity=0.575 Sum_probs=40.4
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
....|.-=|+|||.-+|-+.| ++|+.||.-|++++ ++.|-.+|-.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt-------~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKT-------KEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCC-------HHHHHHHHHcC
Confidence 345799999999999999998 68999999999876 59999999766
No 63
>PLN03212 Transcription repressor MYB5; Provisional
Probab=87.34 E-value=0.61 Score=49.16 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=37.6
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
...|..=|.=+|.-+|.+||..+|..||..+- ...|+..|+.||..
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g------~gRT~KQCReRW~N 70 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG------LLRCGKSCRLRWMN 70 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh------cCCCcchHHHHHHH
Confidence 45688888888889999999999999997763 12467999999974
No 64
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=85.90 E-value=0.37 Score=59.27 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=58.5
Q ss_pred CcCCcccccccCccc-----cchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHH--HHHHHHHHHhhhCCCC
Q 005668 325 HRLSSHFERRLRSQE-----SERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFR--DLLLLFNNFVIFFRKS 390 (684)
Q Consensus 325 hk~a~pF~~PVD~qe-----~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~r--DL~LMF~NA~~FN~pd 390 (684)
++....|..|++... +++|-.+|.++||+...-.++..+.|.++. +|.. ++.|||.|++.||+..
T Consensus 530 ~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~-~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 530 RRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVR-SFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred CccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHH-hhhcccchhhhcCcHHhcCCCc
Confidence 345778999999652 569999999999999999999999999997 9999 9999999999999976
No 65
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=85.65 E-value=1.1 Score=50.49 Aligned_cols=50 Identities=22% Similarity=0.496 Sum_probs=43.5
Q ss_pred CcccccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 8 TTSQQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 8 ~~~~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
+-+-+...|+--|||||.-|+.=.|+++|.-||.=|=+++ .+.|+.-|.-
T Consensus 67 s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKt-------keeck~hy~k 116 (438)
T KOG0457|consen 67 SFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKT-------KEECKEHYLK 116 (438)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccc-------hHHHHHHHHH
Confidence 3456778999999999999999999999999998887654 6999998864
No 66
>PLN03091 hypothetical protein; Provisional
Probab=84.91 E-value=0.92 Score=51.30 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=37.7
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFN 63 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~ 63 (684)
...|..-|.=+|--+|..||..+|..||..+- ...|+..|+.||.
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g------~gRT~KQCRERW~ 58 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG------LQRCGKSCRLRWI 58 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc------cCcCcchHhHHHH
Confidence 45699999999999999999999999997653 1346789999986
No 67
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=84.00 E-value=4.1 Score=41.00 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=36.8
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHH-HHHhhcCCCCCCCHHHHHHHHH-HHHhhhcC
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAM-EVQNRSSALSSLTPQSCRDKFN-EIRRRFTV 71 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~-e~~~r~~~~~~~t~~~C~~k~~-~l~~R~~~ 71 (684)
...|..=++||||..|+||+.-.=.-+++ |.-... + .-|+..|..+|+ -|..+|-.
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~-L--~rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDA-L--KRTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHH-H--hhhHHHHHhHHHHHHHHHHHH
Confidence 45799999999999999999866444443 111110 0 237899999994 34445543
No 68
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=83.14 E-value=1.4 Score=48.16 Aligned_cols=47 Identities=26% Similarity=0.531 Sum_probs=41.6
Q ss_pred cccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 11 QQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
-+.+.||--|||||.-+.---|-++|.-||.=|-+|.- +.|+..|-.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~k-------ee~k~HylK 107 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAK-------EEIKSHYLK 107 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhh-------HHHHHHHHH
Confidence 56789999999999999999999999999999988864 889877743
No 69
>PLN03212 Transcription repressor MYB5; Provisional
Probab=80.26 E-value=1.9 Score=45.63 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=39.0
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhh
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRF 69 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~ 69 (684)
...|..-|+.||..+|..||. .|..||..|--|| ...|+-+|..+-+++
T Consensus 78 kgpWT~EED~lLlel~~~~Gn-KWs~IAk~LpGRT-------DnqIKNRWns~LrK~ 126 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGN-RWSLIAGRIPGRT-------DNEIKNYWNTHLRKK 126 (249)
T ss_pred cCCCChHHHHHHHHHHHhccc-cHHHHHhhcCCCC-------HHHHHHHHHHHHhHH
Confidence 356777799999999999996 5999999886665 589998887655443
No 70
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=76.77 E-value=2 Score=49.51 Aligned_cols=49 Identities=29% Similarity=0.528 Sum_probs=41.9
Q ss_pred cccccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 9 TSQQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 9 ~~~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
..+....|.-=|.|||-.||..|| ++|..||.=|.+|+ ...|-+||-.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks-------~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKS-------QEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCC-------HHHHHHHHHhc
Confidence 446677898889999999999998 68999999888665 69999999665
No 71
>PLN03091 hypothetical protein; Provisional
Probab=75.22 E-value=3.3 Score=47.08 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=43.0
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhc
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFT 70 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~ 70 (684)
...|..-|+.+|...|..||. .|-.||..|.-|+ ...|+-+|..|-+||-
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~LPGRT-------DnqIKNRWnslLKKkl 116 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRT-------DNEIKNLWNSCLKKKL 116 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhcCCCC-------HHHHHHHHHHHHHHHH
Confidence 468999999999999999997 6999999887665 5799999998877763
No 72
>smart00595 MADF subfamily of SANT domain.
Probab=73.60 E-value=3.3 Score=35.71 Aligned_cols=29 Identities=24% Similarity=0.725 Sum_probs=26.7
Q ss_pred CchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcC
Q 005668 35 SWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTV 71 (684)
Q Consensus 35 ~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~ 71 (684)
.|..||.+|.. |+..|+.|+..|+.+|..
T Consensus 29 aW~~Ia~~l~~--------~~~~~~~kw~~LR~~y~~ 57 (89)
T smart00595 29 AWEEIAEELGL--------SVEECKKRWKNLRDRYRR 57 (89)
T ss_pred HHHHHHHHHCc--------CHHHHHHHHHHHHHHHHH
Confidence 89999999976 899999999999999975
No 73
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=70.07 E-value=5.6 Score=34.59 Aligned_cols=35 Identities=17% Similarity=0.592 Sum_probs=31.1
Q ss_pred CchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcC
Q 005668 35 SWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTV 71 (684)
Q Consensus 35 ~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~ 71 (684)
.|+.|+.+|..++-. .+|...|+.||..|++.|..
T Consensus 33 ~w~~i~~~~~~~~~~--~~t~~qlknk~~~lk~~y~~ 67 (96)
T PF12776_consen 33 GWNNIAEEFNEKTGL--NYTKKQLKNKWKTLKKDYRI 67 (96)
T ss_pred HHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHHHHH
Confidence 599999999997644 78999999999999999974
No 74
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=69.06 E-value=3 Score=50.50 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=66.6
Q ss_pred cCchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCc--------------c---------
Q 005668 310 VKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLY--------------S--------- 366 (684)
Q Consensus 310 ~kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~Y--------------s--------- 366 (684)
+....|+.||.+|. -++|....|.|..+..-|.+|.|++..|.+..| .
T Consensus 74 I~kdhll~i~kqlv---------~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~ 144 (1113)
T KOG0644|consen 74 IAKDHLLQILKQLV---------PMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRG 144 (1113)
T ss_pred cchHHHHHHHHHhc---------cCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCccccc
Confidence 45567888887764 567778899999999999999999999987666 2
Q ss_pred -CcH---H--HHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 005668 367 -NCF---Q--KFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTLVI 405 (684)
Q Consensus 367 -Si~---~--EF~rDL~LMF~NA~~FN~pdS~vykaA~eLr~lf~ 405 (684)
++. - +..+-..+|-.||..|+.|++ +++.+..+.++.-
T Consensus 145 ~sl~s~~~~~~~h~~a~~i~~at~~~akPgt-mvqkmk~ikrLlg 188 (1113)
T KOG0644|consen 145 VSLRSIGGGFEIHHRAPSIGCATFSIAKPGT-MVQKMKNIKRLLG 188 (1113)
T ss_pred ceeccCCcchhhhhcCcccccceeeecCcHH-HHHHHHHHHHHHh
Confidence 222 0 356778889999999999999 6777766665543
No 75
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=64.79 E-value=15 Score=30.63 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=37.0
Q ss_pred ccchhhHHHHHHHHHhhccCCCc---hHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 14 QQWGTLEELLLACAVNRHGTRSW---DSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHGt~~W---dsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
..|..=|..++..||..+|.++| ..|+..+.. ..||+..|+..++-
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~-----~~lT~~qV~SH~QK 52 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV-----DGLTRDQVASHLQK 52 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC-----CCCCHHHHHHHHHH
Confidence 57999999999999999999999 888766542 25788988865543
No 76
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=60.82 E-value=1.1 Score=52.64 Aligned_cols=74 Identities=5% Similarity=-0.032 Sum_probs=67.7
Q ss_pred cccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 005668 329 SHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTL 403 (684)
Q Consensus 329 ~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~eLr~l 403 (684)
..|...++-..++.||.+++-||-+....+++..+.|.... .|..|+.++|.|+++|+.....++..+..|...
T Consensus 214 er~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~-~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 214 ERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTS-LYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred cccccCcccccccceeEeeCCccCccccccchhcccceecc-cccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 45666677789999999999999999999999999999998 999999999999999999999999999888764
No 77
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=58.96 E-value=8.4 Score=39.91 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=36.3
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHH-hhcCCCCCCCHHHHHHHHH
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQ-NRSSALSSLTPQSCRDKFN 63 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~-~r~~~~~~~t~~~C~~k~~ 63 (684)
.+.|..=|..+|.-=|..||...|.+||.-+- -|+ --.||+|+.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~-------GKSCRlRW~ 53 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRC-------GKSCRLRWT 53 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCcc-------chHHHHHhh
Confidence 47888889999999999999999999998765 444 467777664
No 78
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=55.05 E-value=20 Score=38.73 Aligned_cols=56 Identities=20% Similarity=0.516 Sum_probs=38.5
Q ss_pred ccchhhHHHHHHHHH------hhcc---CCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcCC
Q 005668 14 QQWGTLEELLLACAV------NRHG---TRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTVK 72 (684)
Q Consensus 14 ~~WGTwEELLLacAV------~RHG---t~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~~ 72 (684)
..|.+=|=|+|..|- ++.| ...|.-||..++-.- ..-|+.-|+.||+.|..||-..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g---~~rs~~qck~K~~nl~k~Yk~~ 119 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELG---YPRSPKQCKAKIENLKKKYKKE 119 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHH
Confidence 567665666665542 3344 467999998433221 2459999999999999999753
No 79
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=51.31 E-value=31 Score=32.73 Aligned_cols=56 Identities=21% Similarity=0.430 Sum_probs=39.6
Q ss_pred ccccccchhhHHHHHHHHHhhccC---CCchHHHHHHHhhcCCCC-----CCCHHHHHHHHHHH
Q 005668 10 SQQQQQWGTLEELLLACAVNRHGT---RSWDSIAMEVQNRSSALS-----SLTPQSCRDKFNEI 65 (684)
Q Consensus 10 ~~~~~~WGTwEELLLacAV~RHGt---~~WdsVA~e~~~r~~~~~-----~~t~~~C~~k~~~l 65 (684)
+..+-.|.--|.=.|.|.|.+||. ..|+-|-++++.--.--. +.||+....+-+-|
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tL 109 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTL 109 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHH
Confidence 456778888899999999999999 999999999987532111 45777666555444
No 80
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=47.70 E-value=22 Score=30.61 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHHH
Q 005668 354 RTIQSRLDRGLYSNCFQKFFRDLLLLFN 381 (684)
Q Consensus 354 sTIKkKLe~g~YsSi~~EF~rDL~LMF~ 381 (684)
..|+..+..|.|.|.. |+++|.+.++.
T Consensus 12 ~~i~~~V~sG~Y~s~S-EVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSAS-EVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHH
Confidence 4689999999999999 99999998875
No 81
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=45.65 E-value=27 Score=41.83 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=49.5
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcCC
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTVK 72 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~~ 72 (684)
-.+.|.--||--|..+|.-+|.+.|-.+|++|-.|+. ---..||.+|-.++-|.+.+
T Consensus 411 K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~----~q~~rrR~R~~~~k~rl~~~ 467 (939)
T KOG0049|consen 411 KVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTS----RQLRRRRLRLIAAKLRLAAG 467 (939)
T ss_pred ccCceeecchHHHHHHHHHHccchHHHHHHHccccch----hHHHHHHHHHHHHHHHHhcC
Confidence 3567888899999999999999999999999988875 33468999999999998875
No 82
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=44.38 E-value=43 Score=28.37 Aligned_cols=52 Identities=17% Similarity=0.413 Sum_probs=41.1
Q ss_pred cchhhHHHHHHHHHhhc-----c-----------CCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhh
Q 005668 15 QWGTLEELLLACAVNRH-----G-----------TRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRR 68 (684)
Q Consensus 15 ~WGTwEELLLacAV~RH-----G-----------t~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R 68 (684)
.|..=|..+|..-|..| | ...|..|+.+|-+-.+. ..|+..|+.+|.+|+.+
T Consensus 4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~--~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPG--KRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHH
Confidence 45666777777777776 3 34699999999997663 67999999999999865
No 83
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=43.27 E-value=27 Score=29.14 Aligned_cols=32 Identities=22% Similarity=0.705 Sum_probs=25.9
Q ss_pred CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcC
Q 005668 34 RSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTV 71 (684)
Q Consensus 34 ~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~ 71 (684)
..|..||.+|... +++..|+.++..|+.+|..
T Consensus 27 ~aw~~Ia~~l~~~------~~~~~~~~~w~~Lr~~y~~ 58 (85)
T PF10545_consen 27 EAWQEIARELGKE------FSVDDCKKRWKNLRDRYRR 58 (85)
T ss_pred HHHHHHHHHHccc------hhHHHHHHHHHHHHHHHHH
Confidence 4699999999543 5588899999999988854
No 84
>PRK04654 sec-independent translocase; Provisional
Probab=38.65 E-value=1.4e+02 Score=31.44 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=50.3
Q ss_pred HHHHHH--HHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcCCCCCCcCCccchHHHH-HHHHHHHHHH
Q 005668 21 ELLLAC--AVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTVKNGAESTSLVPLVDQL-RQIRVQELRA 97 (684)
Q Consensus 21 ELLLac--AV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~~~~~~~~~~~~W~EEL-RKlRVAELRR 97 (684)
||||.+ |++=-|-..|.-++ ......++.+++=|.. -++|| |.+.+.|||+
T Consensus 8 ELLlI~VVALlV~GPerLPe~a---------------RtlGk~irk~R~~~~~-----------vk~El~~El~~~ELrk 61 (214)
T PRK04654 8 ELTLIAVVALVVLGPERLPKAA---------------RFAGLWVRRARMQWDS-----------VKQELERELEAEELKR 61 (214)
T ss_pred HHHHHHHHHHHhcCchHHHHHH---------------HHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHH
Confidence 666554 44556767776665 3445566666653432 34444 5567899999
Q ss_pred HHHhhccchhhHHHHHHHHHHHHhh
Q 005668 98 EVQRRDVSIVSLELKVKRLEEEREK 122 (684)
Q Consensus 98 ever~d~SIgSLqsKvk~L~eere~ 122 (684)
+|+.....|..+...|+..-.+-++
T Consensus 62 ~l~~~~~~i~~~~~~lk~~~~el~q 86 (214)
T PRK04654 62 SLQDVQASLREAEDQLRNTQQQVEQ 86 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888877777666654
No 85
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.58 E-value=34 Score=28.81 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHh
Q 005668 91 RVQELRAEVQRRDVSIVSLELKVKRLEEERE 121 (684)
Q Consensus 91 RVAELRRever~d~SIgSLqsKvk~L~eere 121 (684)
||.||-.+|.+-+.+|++|+...+.|+++=+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988755
No 86
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=35.97 E-value=41 Score=29.79 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHHH
Q 005668 354 RTIQSRLDRGLYSNCFQKFFRDLLLLFN 381 (684)
Q Consensus 354 sTIKkKLe~g~YsSi~~EF~rDL~LMF~ 381 (684)
.-|+..|.+|.|.|.. |+++|.+.++.
T Consensus 15 ~~i~~~V~sG~Y~s~S-EvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSAS-EVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHH
Confidence 3589999999999999 99999887764
No 87
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=34.99 E-value=1.1e+02 Score=29.90 Aligned_cols=60 Identities=23% Similarity=0.436 Sum_probs=44.9
Q ss_pred HHHHHHhhhcCCCCCC---cCCccchHHHHHHH------HHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 005668 61 KFNEIRRRFTVKNGAE---STSLVPLVDQLRQI------RVQELRAEVQRRDVSIVSLELKVKRLEEER 120 (684)
Q Consensus 61 k~~~l~~R~~~~~~~~---~~~~~~W~EELRKl------RVAELRRever~d~SIgSLqsKvk~L~eer 120 (684)
+-.+|+++|....... .....+-+.|+|.+ -|-+|..+|..-|.-|..|..++..|....
T Consensus 56 ~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 56 RLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred HHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899998754321 12234566777765 588999999999999999999999887653
No 88
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=34.25 E-value=12 Score=28.60 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhccchhh
Q 005668 88 RQIRVQELRAEVQRRDVSIVS 108 (684)
Q Consensus 88 RKlRVAELRRever~d~SIgS 108 (684)
.+++|++||+-|...++.+-|
T Consensus 2 ~sltV~~Lk~iL~~~~I~~ps 22 (35)
T PF12949_consen 2 KSLTVAQLKRILDEHGIEFPS 22 (35)
T ss_dssp TT--SHHHHHHHHHHT---SS
T ss_pred CcCcHHHHHHHHHHcCCCCCC
Confidence 578999999999998887654
No 89
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=31.27 E-value=32 Score=34.12 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 005668 82 PLVDQLRQIRVQELRAEVQ 100 (684)
Q Consensus 82 ~W~EELRKlRVAELRReve 100 (684)
.-|+++|++||+||+.++.
T Consensus 38 ~~l~~~R~~R~~el~~~~~ 56 (175)
T cd02987 38 EFLQQYREQRMQEMHAKLP 56 (175)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3699999999999999853
No 90
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.81 E-value=61 Score=27.96 Aligned_cols=33 Identities=33% Similarity=0.388 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhh
Q 005668 83 LVDQLRQIRVQELRAEVQRRDVSIVSLELKVKRLEEEREK 122 (684)
Q Consensus 83 W~EELRKlRVAELRRever~d~SIgSLqsKvk~L~eere~ 122 (684)
-=|+|-=+=|+||- .-|+-||..|++|++|+.+
T Consensus 18 ~~d~LsllsV~El~-------eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 18 GNDALSLLSVAELE-------ERIALLQAEIERLKAELAK 50 (65)
T ss_pred chhHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 34558888899984 4599999999999999985
No 91
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=26.30 E-value=48 Score=38.82 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=39.2
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
.|+.|-.-|+=+|--||.-+|+--|.-||.-+.. =|+.-|+++|..
T Consensus 6 kggvwrntEdeilkaav~kyg~nqws~i~sll~~-------kt~rqC~~rw~e 51 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNR-------KTARQCKARWEE 51 (617)
T ss_pred ecceecccHHHHHHHHHHHcchHHHHHHHHHHhh-------cchhHHHHHHHH
Confidence 3678999999999999999999999999976553 367899999874
No 92
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.32 E-value=1.2e+02 Score=37.40 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.4
Q ss_pred chhhHHHHHHHHHHHHhhc
Q 005668 105 SIVSLELKVKRLEEEREKS 123 (684)
Q Consensus 105 SIgSLqsKvk~L~eere~s 123 (684)
-||+|...+++|..++..+
T Consensus 184 gl~ll~~~Lkrl~dsk~~~ 202 (1102)
T KOG1924|consen 184 GLGLLLDVLKRLRDSKVGS 202 (1102)
T ss_pred hHHHHHHHHHHHHhhhhhh
Confidence 4789999999998887753
No 93
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=24.97 E-value=79 Score=34.46 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCCcCCccchHHHHHH--------HHHHHHHHHHHh-----------------------
Q 005668 53 LTPQSCRDKFNEIRRRFTVKNGAESTSLVPLVDQLRQ--------IRVQELRAEVQR----------------------- 101 (684)
Q Consensus 53 ~t~~~C~~k~~~l~~R~~~~~~~~~~~~~~W~EELRK--------lRVAELRRever----------------------- 101 (684)
|+.+--++|-..|+.+...=. +..+.-+++.|++ +|||||=+++..
T Consensus 35 lkeq~yk~kLa~Lq~~Leel~---~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~ 111 (291)
T KOG4466|consen 35 LKEQMYKDKLAQLQAQLEELG---QGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKKK 111 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777654211 1112235555444 367877666543
Q ss_pred --hccchhhHHHHHHHHHHHHhh
Q 005668 102 --RDVSIVSLELKVKRLEEEREK 122 (684)
Q Consensus 102 --~d~SIgSLqsKvk~L~eere~ 122 (684)
+|.-|++||-|+++|+++|.-
T Consensus 112 lLke~l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 112 LLKENLISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 366899999999999999973
No 94
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.16 E-value=85 Score=33.35 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 005668 89 QIRVQELRAEVQRRDVSIVSLELKVKRLEEE 119 (684)
Q Consensus 89 KlRVAELRRever~d~SIgSLqsKvk~L~ee 119 (684)
++|++||=.||-+--.-|.+|+..|++|+++
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999987
No 95
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.78 E-value=1.3e+02 Score=24.34 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Q 005668 84 VDQLRQIRVQELRAEVQRRDVSIVSLELKVKRLEEE 119 (684)
Q Consensus 84 ~EELRKlRVAELRRever~d~SIgSLqsKvk~L~ee 119 (684)
+=+=+|+++.+|..+|......+-.|+..|..|+.|
T Consensus 19 ~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 19 SRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334567888889999988888888999999999865
No 96
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.43 E-value=80 Score=32.05 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhh
Q 005668 86 QLRQIRVQELRAEVQRRDVSIVSLELKVKRLEEEREK 122 (684)
Q Consensus 86 ELRKlRVAELRRever~d~SIgSLqsKvk~L~eere~ 122 (684)
.-|+.++++|..+++.....|..|+.+|+.++.+|+.
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3567789999999999999999999999999988874
No 97
>PRK04239 hypothetical protein; Provisional
Probab=22.21 E-value=1.5e+02 Score=28.24 Aligned_cols=18 Identities=22% Similarity=0.604 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005668 84 VDQLRQIRVQELRAEVQR 101 (684)
Q Consensus 84 ~EELRKlRVAELRRever 101 (684)
||+||+.|++||.+....
T Consensus 3 Le~IR~~rl~eLq~q~~~ 20 (110)
T PRK04239 3 LEEIRRRKLEELQKQAQE 20 (110)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 899999999999976653
No 98
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=21.93 E-value=62 Score=33.17 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=38.9
Q ss_pred cCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 005668 335 LRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 390 (684)
Q Consensus 335 VD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pd 390 (684)
|+.+.+.+|..|=-..||...|-+|++.+-|.. . ||.+=+..+=.||..|....
T Consensus 18 vd~~f~~~ylGmr~E~VD~~Ei~RR~e~~iyD~-~-E~e~A~~W~~~~~~~g~d~n 71 (181)
T PF07882_consen 18 VDPDFFQEYLGMRVEYVDMSEIIRRMEEGIYDE-E-EFEKALAWVKENCKEGDDKN 71 (181)
T ss_dssp --HHHHHHCT--EEEEE-THHHHHHHHCT-S-H-H-HHHHHHHHHHHHSEE---TS
T ss_pred cCHHHHHHHhCCCceeecHHHHHHHHHccCCCH-H-HHHHHHHHHHHhCCcCCCCC
Confidence 455566788888889999999999999999965 5 99999999999999877755
No 99
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.51 E-value=75 Score=32.14 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 005668 82 PLVDQLRQIRVQELRAEVQ 100 (684)
Q Consensus 82 ~W~EELRKlRVAELRReve 100 (684)
.-|+++|++||+||+.+-.
T Consensus 59 ~~Le~yR~kRl~el~~~~~ 77 (192)
T cd02988 59 RFLEEYRRKRLAEMKALAE 77 (192)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4899999999999998643
Done!