Query 005668
Match_columns 684
No_of_seqs 192 out of 1157
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 04:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 99.9 6.8E-26 2.3E-30 204.7 12.9 101 312-413 15-115 (117)
2 3d7c_A General control of amin 99.9 7.1E-26 2.4E-30 203.4 12.0 99 313-412 10-108 (112)
3 3nxb_A CAT eye syndrome critic 99.9 7.7E-26 2.6E-30 204.1 11.4 99 312-411 18-116 (116)
4 1e6i_A Transcriptional activat 99.9 1.3E-25 4.4E-30 204.8 12.1 100 312-412 15-114 (121)
5 2d9e_A Peregrin; four-helix bu 99.9 1.9E-25 6.5E-30 203.9 12.2 100 313-413 10-109 (121)
6 2dat_A Possible global transcr 99.9 1.6E-25 5.3E-30 204.6 11.2 100 312-412 15-120 (123)
7 3mb3_A PH-interacting protein; 99.9 2.5E-25 8.6E-30 205.7 12.6 103 311-414 22-125 (135)
8 2yyn_A Transcription intermedi 99.9 2.6E-25 8.9E-30 206.4 12.5 103 310-414 20-124 (135)
9 3p1f_A CREB-binding protein; s 99.9 3.4E-25 1.2E-29 200.6 12.4 101 313-414 14-117 (119)
10 3q2e_A Bromodomain and WD repe 99.9 3.6E-25 1.2E-29 202.0 12.6 104 312-416 12-116 (123)
11 2i7k_A Bromodomain-containing 99.9 3.6E-25 1.2E-29 201.3 11.6 101 313-414 11-111 (117)
12 2oss_A HUNK1 protein, bromodom 99.9 2.8E-25 9.6E-30 204.3 10.2 97 315-412 26-124 (127)
13 4alg_A Bromodomain-containing 99.9 3.3E-25 1.1E-29 210.2 10.7 99 315-414 37-137 (154)
14 3iu5_A Protein polybromo-1; PB 99.9 6.4E-25 2.2E-29 198.3 11.9 102 312-414 7-114 (116)
15 3mb4_A Protein polybromo-1; PB 99.9 5.2E-25 1.8E-29 201.2 11.2 100 312-412 17-122 (124)
16 2ouo_A HUNK1 protein, bromodom 99.9 2.7E-25 9.1E-30 205.2 9.1 101 311-412 23-128 (130)
17 2grc_A Probable global transcr 99.9 7.6E-25 2.6E-29 201.7 11.8 102 312-414 13-121 (129)
18 3rcw_A Bromodomain-containing 99.9 1.4E-24 4.8E-29 200.7 13.0 101 313-414 16-116 (135)
19 3hme_A Bromodomain-containing 99.9 9.3E-25 3.2E-29 199.6 11.5 99 313-412 16-114 (123)
20 3mqm_A Probable histone-lysine 99.9 1.1E-24 3.9E-29 199.2 11.7 101 313-414 12-118 (126)
21 3k2j_A Protein polybromo-1; PB 99.9 2E-24 6.9E-29 199.6 12.9 102 312-414 19-126 (130)
22 3ljw_A Protein polybromo-1; al 99.9 1.7E-24 6E-29 196.7 12.2 101 313-414 11-117 (120)
23 3jvl_A Bromodomain-containing 99.9 5E-25 1.7E-29 199.8 8.1 104 310-414 9-117 (120)
24 3fkm_X Signaling protein; brom 99.9 3.3E-24 1.1E-28 205.5 11.2 101 311-412 22-124 (166)
25 2ri7_A Nucleosome-remodeling f 99.9 2.8E-24 9.7E-29 204.9 9.8 100 311-411 73-172 (174)
26 3uv4_A Second bromodomain of h 99.9 9.9E-24 3.4E-28 201.1 11.3 100 314-414 29-133 (158)
27 3tlp_A Protein polybromo-1; PB 99.9 1.9E-23 6.5E-28 196.3 12.1 102 312-414 26-134 (150)
28 3o36_A Transcription intermedi 99.9 2.4E-23 8.2E-28 200.9 11.5 102 310-413 81-184 (184)
29 3dai_A ATPase family AAA domai 99.9 3.4E-23 1.2E-27 190.8 11.8 99 313-412 13-115 (130)
30 3u5n_A E3 ubiquitin-protein li 99.9 3.5E-22 1.2E-26 196.4 11.4 102 311-414 82-203 (207)
31 3uv5_A Transcription initiatio 99.9 5.9E-22 2E-26 201.6 12.2 103 311-414 15-117 (265)
32 2ro1_A Transcription intermedi 99.9 2.6E-22 9E-27 195.8 9.2 97 312-414 78-179 (189)
33 2dkw_A Hypothetical protein KI 99.9 6.1E-22 2.1E-26 183.5 11.0 95 313-413 15-113 (131)
34 3uv5_A Transcription initiatio 99.9 1.7E-21 5.8E-26 198.2 11.7 92 322-414 149-240 (265)
35 3aad_A Transcription initiatio 99.8 1.5E-21 5.2E-26 201.5 7.7 100 312-412 49-148 (292)
36 3aad_A Transcription initiatio 99.8 4.2E-21 1.5E-25 198.2 10.7 92 321-413 181-272 (292)
37 2r0y_A Chromatin structure-rem 99.8 5.6E-21 1.9E-25 199.2 9.9 87 324-411 177-263 (311)
38 2r10_A Chromatin structure-rem 99.8 5.9E-21 2E-25 202.4 10.1 87 324-411 227-313 (361)
39 2r10_A Chromatin structure-rem 99.8 3.5E-19 1.2E-23 188.8 8.2 95 314-411 82-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 9.7E-19 3.3E-23 182.4 8.8 93 316-411 34-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 2.3E-16 7.8E-21 149.5 12.5 97 313-414 10-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.5 2.9E-14 9.9E-19 139.3 7.5 90 315-416 80-169 (183)
43 2elk_A SPCC24B10.08C protein; 97.5 0.0001 3.4E-09 59.2 5.5 47 12-65 8-55 (58)
44 1x41_A Transcriptional adaptor 97.3 0.00024 8.1E-09 57.3 5.1 47 12-65 7-53 (60)
45 1w0t_A Telomeric repeat bindin 97.3 0.00021 7.3E-09 56.0 4.1 49 14-67 3-51 (53)
46 3sjm_A Telomeric repeat-bindin 97.2 0.00035 1.2E-08 57.4 4.9 51 12-67 10-60 (64)
47 1guu_A C-MYB, MYB proto-oncoge 97.1 0.00037 1.3E-08 54.2 3.8 45 14-65 4-48 (52)
48 2yus_A SWI/SNF-related matrix- 97.0 0.00033 1.1E-08 59.9 3.2 48 10-65 15-62 (79)
49 2d9a_A B-MYB, MYB-related prot 96.8 0.00073 2.5E-08 54.1 3.6 47 12-65 7-53 (60)
50 1gvd_A MYB proto-oncogene prot 96.7 0.0008 2.7E-08 52.4 2.7 44 14-64 4-47 (52)
51 1ity_A TRF1; helix-turn-helix, 96.7 0.0015 5.2E-08 53.8 4.3 53 12-69 9-61 (69)
52 2dim_A Cell division cycle 5-l 96.6 0.0018 6.1E-08 53.4 4.1 46 13-65 9-54 (70)
53 2cu7_A KIAA1915 protein; nucle 96.4 0.0032 1.1E-07 52.3 4.7 52 12-71 8-59 (72)
54 2llk_A Cyclin-D-binding MYB-li 96.1 0.0036 1.2E-07 53.0 3.4 49 13-70 23-71 (73)
55 2din_A Cell division cycle 5-l 95.9 0.0098 3.4E-07 48.4 5.3 48 13-69 9-56 (66)
56 2k9n_A MYB24; R2R3 domain, DNA 95.8 0.008 2.7E-07 53.2 4.5 44 14-64 2-45 (107)
57 2ltp_A Nuclear receptor corepr 94.7 0.0017 5.7E-08 56.5 0.0 52 12-71 15-66 (89)
58 2ckx_A NGTRF1, telomere bindin 95.7 0.0077 2.6E-07 52.1 4.1 52 15-69 2-53 (83)
59 2k9n_A MYB24; R2R3 domain, DNA 95.7 0.0093 3.2E-07 52.7 4.7 51 13-71 53-103 (107)
60 2yum_A ZZZ3 protein, zinc fing 95.6 0.0077 2.6E-07 50.1 3.6 49 12-67 7-60 (75)
61 2roh_A RTBP1, telomere binding 95.5 0.024 8.1E-07 52.4 6.5 56 11-69 29-84 (122)
62 2cqr_A RSGI RUH-043, DNAJ homo 95.3 0.0061 2.1E-07 51.5 1.8 53 11-70 16-71 (73)
63 1gv2_A C-MYB, MYB proto-oncoge 95.2 0.0089 3.1E-07 52.3 2.7 46 13-65 4-49 (105)
64 3osg_A MYB21; transcription-DN 95.1 0.013 4.3E-07 53.4 3.6 47 11-65 9-55 (126)
65 3zqc_A MYB3; transcription-DNA 95.1 0.0094 3.2E-07 54.5 2.6 46 13-65 2-47 (131)
66 2juh_A Telomere binding protei 95.0 0.023 7.8E-07 52.5 5.0 56 11-69 15-70 (121)
67 2aje_A Telomere repeat-binding 94.9 0.019 6.6E-07 51.7 3.9 57 12-71 12-68 (105)
68 3osg_A MYB21; transcription-DN 94.7 0.016 5.5E-07 52.7 3.1 52 13-72 62-113 (126)
69 1gv2_A C-MYB, MYB proto-oncoge 94.6 0.014 4.9E-07 51.0 2.3 49 12-68 55-103 (105)
70 2iw5_B Protein corest, REST co 94.4 0.032 1.1E-06 56.5 4.7 52 11-70 131-182 (235)
71 1h8a_C AMV V-MYB, MYB transfor 94.4 0.022 7.5E-07 51.7 3.2 46 12-64 26-71 (128)
72 2cjj_A Radialis; plant develop 94.0 0.037 1.3E-06 48.8 3.8 51 12-69 7-60 (93)
73 1h8a_C AMV V-MYB, MYB transfor 92.8 0.03 1E-06 50.8 1.2 48 13-68 79-126 (128)
74 1h89_C C-MYB, MYB proto-oncoge 92.7 0.027 9.3E-07 52.8 0.8 45 13-64 6-50 (159)
75 1h89_C C-MYB, MYB proto-oncoge 92.5 0.058 2E-06 50.6 2.8 47 12-65 57-103 (159)
76 2eqr_A N-COR1, N-COR, nuclear 91.9 0.12 4.1E-06 41.7 3.5 48 11-66 10-57 (61)
77 2ebi_A DNA binding protein GT- 91.9 0.13 4.4E-06 43.7 3.9 56 14-72 5-69 (86)
78 1wgx_A KIAA1903 protein; MYB D 91.7 0.11 3.9E-06 44.0 3.4 53 13-72 8-63 (73)
79 2cqq_A RSGI RUH-037, DNAJ homo 91.6 0.23 8E-06 41.7 5.2 51 11-69 6-59 (72)
80 3zqc_A MYB3; transcription-DNA 91.2 0.076 2.6E-06 48.5 1.9 51 13-71 54-105 (131)
81 2xag_B REST corepressor 1; ami 84.4 0.64 2.2E-05 51.6 4.1 52 11-70 378-429 (482)
82 1ign_A Protein (RAP1); RAP1,ye 69.2 3.6 0.00012 42.1 4.1 46 14-66 9-59 (246)
83 1x58_A Hypothetical protein 49 66.9 10 0.00035 31.3 5.6 56 10-70 5-60 (62)
84 4b4c_A Chromodomain-helicase-D 66.0 3.9 0.00013 39.5 3.5 29 15-43 136-164 (211)
85 2xb0_X Chromo domain-containin 52.7 6.9 0.00024 40.4 2.8 29 14-42 169-197 (270)
86 2yqk_A Arginine-glutamic acid 49.4 12 0.00043 30.1 3.3 46 13-66 9-55 (63)
87 1zrj_A E1B-55KDA-associated pr 44.2 12 0.0004 29.6 2.2 35 87-121 10-45 (50)
88 2y9y_A Imitation switch protei 41.7 38 0.0013 36.6 6.4 36 11-46 226-264 (374)
89 1ofc_X ISWI protein; nuclear p 38.9 33 0.0011 36.0 5.3 35 12-46 211-248 (304)
90 2do1_A Nuclear protein HCC-1; 38.5 13 0.00046 29.8 1.8 35 87-121 10-45 (55)
91 2kvu_A MKL/myocardin-like prot 36.3 27 0.00092 29.9 3.4 39 84-122 23-62 (75)
92 1yyb_A Programmed cell death p 31.2 29 0.001 24.1 2.3 17 82-98 5-21 (27)
93 3trt_A Vimentin; cytoskeleton, 30.8 66 0.0023 26.4 4.9 16 56-71 12-27 (77)
94 2crg_A Metastasis associated p 29.4 38 0.0013 27.9 3.2 49 11-67 6-55 (70)
95 1ofc_X ISWI protein; nuclear p 29.2 56 0.0019 34.3 5.2 51 14-71 108-161 (304)
96 1h1j_S THO1 protein; SAP domai 28.4 30 0.001 27.3 2.3 36 87-122 5-41 (51)
97 3swk_A Vimentin; cytoskeleton, 28.0 64 0.0022 27.7 4.5 29 92-120 51-79 (86)
98 3ol1_A Vimentin; structural ge 26.3 94 0.0032 28.0 5.5 29 92-120 71-99 (119)
99 1zxa_A CGMP-dependent protein 25.3 61 0.0021 27.1 3.7 30 87-116 22-51 (67)
100 3s9g_A Protein hexim1; cyclin 24.7 1.4E+02 0.0049 26.8 6.1 70 34-121 13-82 (104)
101 3htk_A Structural maintenance 24.4 63 0.0022 25.3 3.5 53 55-116 7-59 (60)
102 3si5_X Protein CASC5; BUBR1-bl 23.5 33 0.0011 23.4 1.4 16 557-572 8-23 (24)
103 2l5g_A GPS2 protein, G protein 23.3 49 0.0017 24.9 2.4 20 103-122 14-33 (38)
104 3kxe_C Antitoxin protein PARD- 23.3 62 0.0021 28.0 3.5 29 354-383 16-44 (88)
105 1fex_A TRF2-interacting telome 23.0 33 0.0011 27.5 1.6 43 16-64 5-55 (59)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.93 E-value=6.8e-26 Score=204.71 Aligned_cols=101 Identities=25% Similarity=0.332 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 391 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS 391 (684)
.+.|..||+.|..|+.+++|..||+...+|+||++|++||||+||+.||+++.|.++. +|..||.|||.||++||+++|
T Consensus 15 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s 93 (117)
T 3g0l_A 15 LALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLE-TFALDVRLVFDNCETFNEDDS 93 (117)
T ss_dssp HHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 005668 392 QEYAAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 392 ~vykaA~eLr~lf~k~msk~l~ 413 (684)
.+|.+|..|+.+|++.|.+++.
T Consensus 94 ~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 94 DIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998874
No 2
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.93 E-value=7.1e-26 Score=203.37 Aligned_cols=99 Identities=23% Similarity=0.298 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..||+.|..|+.+++|..||+...+|+||++|++||||+||+.||++|.|.++. +|.+||.|||.||++||+++|.
T Consensus 10 ~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~yN~~~s~ 88 (112)
T 3d7c_A 10 TTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRK-LFVADLQRVIANCREYNPPDSE 88 (112)
T ss_dssp HHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 568999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005668 393 EYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk~l 412 (684)
+|.+|..|+.+|.+.|.++.
T Consensus 89 ~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 89 YCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999998753
No 3
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.93 E-value=7.7e-26 Score=204.07 Aligned_cols=99 Identities=18% Similarity=0.353 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 391 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS 391 (684)
.+.|..||+.|..|+.+++|..||+...+|+||++|++||||+||+.||+++.|.++. +|..||.|||.||++||+++|
T Consensus 18 ~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s 96 (116)
T 3nxb_A 18 FTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKE-EFVNDMKTMFRNCRKYNGESS 96 (116)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005668 392 QEYAAAQELRTLVIKEMTDM 411 (684)
Q Consensus 392 ~vykaA~eLr~lf~k~msk~ 411 (684)
.+|.+|..|+.+|++.|.++
T Consensus 97 ~~~~~A~~L~~~f~~~~~kh 116 (116)
T 3nxb_A 97 EYTKMSDNLERCFHRAMMKH 116 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999998753
No 4
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=1.3e-25 Score=204.80 Aligned_cols=100 Identities=19% Similarity=0.375 Sum_probs=96.5
Q ss_pred chHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 391 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS 391 (684)
...|..||+.|..|+.+++|..||+...+|+||++|++||||+||+.||++|.|.++. +|.+||+|||+||++||+++|
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~s 93 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKME-DFIYDARLVFNNCRMYNGENT 93 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3679999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 005668 392 QEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 392 ~vykaA~eLr~lf~k~msk~l 412 (684)
.+|.+|..|+.+|.+.|..+.
T Consensus 94 ~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 94 SYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999998754
No 5
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=203.87 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..||+.|..|+.+++|..||+...+|+||++|++||||.||+.||+++.|.++. +|.+||+|||.||++||+++|.
T Consensus 10 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 88 (121)
T 2d9e_A 10 ILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFD-DFEEDFNLIVSNCLKYNAKDTI 88 (121)
T ss_dssp HHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 568999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 005668 393 EYAAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk~l~ 413 (684)
+|.+|..|+.+|...|.+...
T Consensus 89 ~~~~A~~L~~~~~~~l~~~~~ 109 (121)
T 2d9e_A 89 FYRAAVRLREQGGAVLRQARR 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988877654
No 6
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=204.58 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=94.9
Q ss_pred chHHHHHHHHHHhCc------CCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 005668 312 SEPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 385 (684)
Q Consensus 312 skpLl~ILe~L~~hk------~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~ 385 (684)
.+.|..||+.|+.++ .+++|..||+...+|+||++|++||||.||++||+++.|.++. +|.+||+|||.||++
T Consensus 15 ~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~ 93 (123)
T 2dat_A 15 TKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLG-DLEKDVMLLCHNAQT 93 (123)
T ss_dssp HHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHH
Confidence 367999999999886 6999999999999999999999999999999999999999998 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 005668 386 FFRKSSQEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 386 FN~pdS~vykaA~eLr~lf~k~msk~l 412 (684)
||+++|.+|.+|..|+.+|++.|++++
T Consensus 94 yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 94 FNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999988655
No 7
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.92 E-value=2.5e-25 Score=205.73 Aligned_cols=103 Identities=18% Similarity=0.343 Sum_probs=99.4
Q ss_pred CchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC-
Q 005668 311 KSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRK- 389 (684)
Q Consensus 311 kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~p- 389 (684)
..+.|..||+.|..|+.+++|..||+...+|+||++|++||||.||+.||.+|.|.++. +|..||.|||.||++||++
T Consensus 22 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~ 100 (135)
T 3mb3_A 22 WKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPM-ELCKDVRLIFSNSKAYTPSK 100 (135)
T ss_dssp HHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 34679999999999999999999999999999999999999999999999999999998 9999999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 390 SSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 390 dS~vykaA~eLr~lf~k~msk~l~k 414 (684)
+|.+|.+|..|+.+|++.|..+++.
T Consensus 101 ~s~i~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 101 RSRIYSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876
No 8
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.92 E-value=2.6e-25 Score=206.42 Aligned_cols=103 Identities=23% Similarity=0.378 Sum_probs=98.2
Q ss_pred cCchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhC--CCccCcHHHHHHHHHHHHHHHhhhC
Q 005668 310 VKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDR--GLYSNCFQKFFRDLLLLFNNFVIFF 387 (684)
Q Consensus 310 ~kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~--g~YsSi~~EF~rDL~LMF~NA~~FN 387 (684)
...+.|..||..|+.|+.+++|..||+. .+|+||+||++||||.||+.||++ +.|.++. +|.+||+|||+||++||
T Consensus 20 ~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~-ef~~Dv~Lif~Na~~yN 97 (135)
T 2yyn_A 20 IDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQNCAEFN 97 (135)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHH-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 3446799999999999999999999997 799999999999999999999998 5899998 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 388 RKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 388 ~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
+++|.+|.+|..|+.+|++.|.++++.
T Consensus 98 ~~~s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 98 EPDSEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999976
No 9
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.92 E-value=3.4e-25 Score=200.65 Aligned_cols=101 Identities=26% Similarity=0.455 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHh-CcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 005668 313 EPLVRFLGMIRS-HRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRK 389 (684)
Q Consensus 313 kpLl~ILe~L~~-hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~p 389 (684)
+.|+.+|+.|.. ++.+++|..||++. ++|+||++|++||||+||+.||++|.|.++. +|..||.|||.||++||++
T Consensus 14 ~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~ 92 (119)
T 3p1f_A 14 QALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPW-QYVDDVWLMFNNAWLYNRK 92 (119)
T ss_dssp HHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 568889999877 78999999999987 7999999999999999999999999999998 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 390 SSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 390 dS~vykaA~eLr~lf~k~msk~l~k 414 (684)
+|.+|.+|..|+.+|++.|..++..
T Consensus 93 ~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 93 TSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998864
No 10
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.92 E-value=3.6e-25 Score=201.97 Aligned_cols=104 Identities=20% Similarity=0.364 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCC-C
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRK-S 390 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~p-d 390 (684)
.+.|..||+.|..|+.+++|..||+...+|+||++|++||||.||+.||.++.|.++. +|..||.|||.||++||++ +
T Consensus 12 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~~ 90 (123)
T 3q2e_A 12 KKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPL-EFCKDIRLIFSNAKAYTPNKR 90 (123)
T ss_dssp HHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 3679999999999999999999999999999999999999999999999999999998 9999999999999999996 9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcC
Q 005668 391 SQEYAAAQELRTLVIKEMTDMLRKQQ 416 (684)
Q Consensus 391 S~vykaA~eLr~lf~k~msk~l~k~~ 416 (684)
|.+|.+|..|+.+|.+.|.++++.+.
T Consensus 91 s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 91 SKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998744
No 11
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.92 E-value=3.6e-25 Score=201.31 Aligned_cols=101 Identities=16% Similarity=0.275 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..||+.|..++.+++|..||+...+|+||+||++||||+||++||.+|.|.++. +|.+||+|||+||++||+++|.
T Consensus 11 ~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Li~~Na~~yN~~~s~ 89 (117)
T 2i7k_A 11 EALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIE-ELKDNFKLMCTNAMIYNKPETI 89 (117)
T ss_dssp HHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHH-HHHHHHHHHHHHHHHTSCSSSS
T ss_pred HHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 568889999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 005668 393 EYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk~l~k 414 (684)
+|.+|..|++.|.+.+...+-+
T Consensus 90 i~~~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 90 YYKAAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988743
No 12
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.92 E-value=2.8e-25 Score=204.29 Aligned_cols=97 Identities=21% Similarity=0.400 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 315 LVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 315 Ll~ILe~L~~hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
|..||+.|..|+.+++|..||+.. .+|+||+||++||||+||+.||++|.|.++. +|.+||+|||+||++||+++|.
T Consensus 26 ~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~s~ 104 (127)
T 2oss_A 26 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ-ECIQDFNTMFTNCYIYNKPGDD 104 (127)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 445889999999999999999975 8999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005668 393 EYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk~l 412 (684)
+|.+|..|+.+|++.|.++.
T Consensus 105 i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 105 IVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999987654
No 13
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.92 E-value=3.3e-25 Score=210.16 Aligned_cols=99 Identities=19% Similarity=0.371 Sum_probs=93.4
Q ss_pred HHHHHHHHHhCcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 315 LVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 315 Ll~ILe~L~~hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
|..||+.|..|+.+|+|..||+.. .+|+||+||++||||.||+.||+++.|.++. +|+.||+|||.||++||++++.
T Consensus 37 ~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na~~YN~~~s~ 115 (154)
T 4alg_A 37 HKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAAS-ECMQDFNTMFTNCYIYNKPTDD 115 (154)
T ss_dssp HHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 445678999999999999999987 7999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 005668 393 EYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk~l~k 414 (684)
+|.+|..|+.+|.+.|.++...
T Consensus 116 i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 116 IVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHCCch
Confidence 9999999999999999887654
No 14
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.92 E-value=6.4e-25 Score=198.29 Aligned_cols=102 Identities=28% Similarity=0.400 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHhC------cCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 005668 312 SEPLVRFLGMIRSH------RLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 385 (684)
Q Consensus 312 skpLl~ILe~L~~h------k~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~ 385 (684)
.+.|..||+.|..+ +.+++|..||+...+|+||++|++||||+||+.||+++.|.++. +|..||.|||.||+.
T Consensus 7 ~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~ 85 (116)
T 3iu5_A 7 IAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVN-LLTADFQLLFNNAKS 85 (116)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 46799999999987 45999999999999999999999999999999999999999998 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 386 FFRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 386 FN~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
||+++|.+|.+|..|+++|.+.|.++..+
T Consensus 86 yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 86 YYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998753
No 15
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.92 E-value=5.2e-25 Score=201.19 Aligned_cols=100 Identities=21% Similarity=0.343 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHh------CcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 005668 312 SEPLVRFLGMIRS------HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 385 (684)
Q Consensus 312 skpLl~ILe~L~~------hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~ 385 (684)
.+.|..||+.|.. |+.+++|..||+...+|+||++|++||||+||+.||+++.|.++. +|..||+|||.||++
T Consensus 17 ~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~ 95 (124)
T 3mb4_A 17 QQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDID-SMVEDFVMMFNNACT 95 (124)
T ss_dssp HHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 3679999999987 667899999999999999999999999999999999999999998 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 005668 386 FFRKSSQEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 386 FN~pdS~vykaA~eLr~lf~k~msk~l 412 (684)
||+++|.+|.+|..|+.+|.+.+.++.
T Consensus 96 yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 96 YNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998764
No 16
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.92 E-value=2.7e-25 Score=205.16 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=94.7
Q ss_pred CchHHHHHHHHHHhCcC---CcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 005668 311 KSEPLVRFLGMIRSHRL---SSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 385 (684)
Q Consensus 311 kskpLl~ILe~L~~hk~---a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~ 385 (684)
..+.|..||+.|..+++ +|+|..|||.. .+|+||+||++||||+||+.||.+|.|.++. +|.+||+|||.||++
T Consensus 23 ~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~ 101 (130)
T 2ouo_A 23 QLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQ-EFGADVRLMFSNCYK 101 (130)
T ss_dssp HHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 34679999999998875 89999999986 5999999999999999999999999999998 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 005668 386 FFRKSSQEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 386 FN~pdS~vykaA~eLr~lf~k~msk~l 412 (684)
||+++|.+|.+|..|+.+|++.|.++.
T Consensus 102 yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 102 YNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999998764
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.91 E-value=7.6e-25 Score=201.70 Aligned_cols=102 Identities=19% Similarity=0.314 Sum_probs=97.0
Q ss_pred chHHHHHHHHHHhCc-------CCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 005668 312 SEPLVRFLGMIRSHR-------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFV 384 (684)
Q Consensus 312 skpLl~ILe~L~~hk-------~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~ 384 (684)
.+.|..||+.|..++ .+++|..||+...+|+||+||++||||+||++||.++.|.++. +|.+||+|||.||+
T Consensus 13 ~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~Li~~Na~ 91 (129)
T 2grc_A 13 TKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN-DLEKDVMLLCQNAQ 91 (129)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHH
Confidence 467999999999875 5899999999999999999999999999999999999999998 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 385 IFFRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 385 ~FN~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
+||+++|.+|.+|..|+.+|.+.+.++...
T Consensus 92 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 92 TFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999988865
No 18
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=200.72 Aligned_cols=101 Identities=21% Similarity=0.290 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..||+.|..|+.+++|..||+...+|+||++|++||||.||+.||+++.|.++. +|..||.|||.||++||+++|.
T Consensus 16 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s~ 94 (135)
T 3rcw_A 16 VLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLH-EFEEDFDLIIDNCMKYNARDTV 94 (135)
T ss_dssp HHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 568889999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 005668 393 EYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk~l~k 414 (684)
+|.+|..|+.+|.+.|.+....
T Consensus 95 ~~~~A~~L~~~~~~~~~~~~~~ 116 (135)
T 3rcw_A 95 FYRAAVRLRDQGGVVLRQARRE 116 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 19
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.91 E-value=9.3e-25 Score=199.65 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
+.|..||+.|..++.+++|..||+...+|+||++|++||||+||+.||++|.|.++. +|..||.|||.||++||+++|.
T Consensus 16 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s~ 94 (123)
T 3hme_A 16 QLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVT-EFKADFKLMCDNAMTYNRPDTV 94 (123)
T ss_dssp HHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHH-HHHHHHHHHHHHHHHHCCCCCH
Confidence 569999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005668 393 EYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk~l 412 (684)
+|.+|..|++.|.+.|.+..
T Consensus 95 ~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 95 YYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp HHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 20
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=199.22 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHhCc------CCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~hk------~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..||+.|..+. .+++|..||+...+|+||++|++||||+||++||.++.|.++. +|.+||.|||.||+.|
T Consensus 12 ~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 90 (126)
T 3mqm_A 12 QIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVE-AFDADMLKVFRNAEKY 90 (126)
T ss_dssp HHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 46788888888764 5999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
|+++|.+|.+|..|+.+|.+.+.+..+.
T Consensus 91 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 91 YGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988765
No 21
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=199.63 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=96.1
Q ss_pred chHHHHHHHHHHhCc------CCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhh
Q 005668 312 SEPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVI 385 (684)
Q Consensus 312 skpLl~ILe~L~~hk------~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~ 385 (684)
...|..||+.|.... .+++|..||+...+|+||++|++||||+||+.||+++.|.++. +|..||+|||.||++
T Consensus 19 ~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~Na~~ 97 (130)
T 3k2j_A 19 YFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLD-HLECDLNLMFENAKR 97 (130)
T ss_dssp HHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 367888888888654 4999999999999999999999999999999999999999998 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 386 FFRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 386 FN~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
||+++|.+|.+|..|+.+|.+.|.++...
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 98 YNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998865
No 22
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.91 E-value=1.7e-24 Score=196.70 Aligned_cols=101 Identities=22% Similarity=0.339 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhCcC------CcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSHRL------SSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~hk~------a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
+.|..||+.|..+.. +++|..||+...+|+||++|++||||+||+.||.++.|.++. +|..||+|||.||++|
T Consensus 11 ~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 89 (120)
T 3ljw_A 11 EILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIH-AMAKDIDLLAKNAKTY 89 (120)
T ss_dssp HHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 568888999987776 999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
|+++|.+|.+|..|+.+|.+.|.++...
T Consensus 90 N~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 90 NEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999997653
No 23
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.91 E-value=5e-25 Score=199.85 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=96.5
Q ss_pred cCchHHHHHHHHHHhCcC---CcccccccCccc--cchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 005668 310 VKSEPLVRFLGMIRSHRL---SSHFERRLRSQE--SERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFV 384 (684)
Q Consensus 310 ~kskpLl~ILe~L~~hk~---a~pF~~PVD~qe--~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~ 384 (684)
...+.|..||..|..++. +|+|..||+... +|+||++|++||||+||+.||+++.|.++. +|..||.|||.||+
T Consensus 9 ~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~ 87 (120)
T 3jvl_A 9 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQ-EFGADVRLMFSNCY 87 (120)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHH
Confidence 334678999999998887 999999999986 999999999999999999999999999998 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 385 IFFRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 385 ~FN~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
+||+++|.+|.+|..|+.+|.+.|.++...
T Consensus 88 ~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 88 KYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCcCC
Confidence 999999999999999999999999877643
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.90 E-value=3.3e-24 Score=205.54 Aligned_cols=101 Identities=15% Similarity=0.270 Sum_probs=94.0
Q ss_pred CchHHHHHHHHHHhCcCCcccccccCcc--ccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 005668 311 KSEPLVRFLGMIRSHRLSSHFERRLRSQ--ESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 388 (684)
Q Consensus 311 kskpLl~ILe~L~~hk~a~pF~~PVD~q--e~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~ 388 (684)
....|..||..|+.++.+++|..||++. .+|+||+||++||||+||+.||.++.|.++. +|..||+|||.||++||+
T Consensus 22 ~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~Na~~yN~ 100 (166)
T 3fkm_X 22 WYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPS-EFVKDVQLIFDNCSLYNT 100 (166)
T ss_dssp HHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 3467899999999999999999999975 6999999999999999999999999999998 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Q 005668 389 KSSQEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 389 pdS~vykaA~eLr~lf~k~msk~l 412 (684)
++|.+|.+|..|+.+|.+.|.++.
T Consensus 101 ~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 101 SNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999998865
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.90 E-value=2.8e-24 Score=204.93 Aligned_cols=100 Identities=21% Similarity=0.439 Sum_probs=95.6
Q ss_pred CchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 005668 311 KSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 390 (684)
Q Consensus 311 kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pd 390 (684)
..+.|..||..|..|+.+++|..||+...+|+||++|++||||+||++||+++.|.++. +|.+||+|||+||++||+++
T Consensus 73 ~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~ 151 (174)
T 2ri7_A 73 DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLT-EFVADMTKIFDNCRYYNPSD 151 (174)
T ss_dssp HHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHH-HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 34679999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 005668 391 SQEYAAAQELRTLVIKEMTDM 411 (684)
Q Consensus 391 S~vykaA~eLr~lf~k~msk~ 411 (684)
|.+|.+|..|+.+|.++|.++
T Consensus 152 s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 152 SPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp SHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988653
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.90 E-value=9.9e-24 Score=201.07 Aligned_cols=100 Identities=21% Similarity=0.259 Sum_probs=91.7
Q ss_pred HHHHHHHH-----HHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCC
Q 005668 314 PLVRFLGM-----IRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFR 388 (684)
Q Consensus 314 pLl~ILe~-----L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~ 388 (684)
.|..||+. |..++.+|+|..||+...+|+||+||++||||.||+.||.++.|.++. +|..||.|||.||++||+
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na~~yN~ 107 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNG 107 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 45555555 456889999999999999999999999999999999999999999998 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 389 KSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 389 pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
++|.+|.+|..|..+|.+.|.++...
T Consensus 108 ~~s~i~~~A~~L~~~~~~~l~e~~~~ 133 (158)
T 3uv4_A 108 PESQYTKTAQEIVNVCYQTLTEYDEH 133 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=196.27 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=95.7
Q ss_pred chHHHHHHHHHHhCcC-------CcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHh
Q 005668 312 SEPLVRFLGMIRSHRL-------SSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFV 384 (684)
Q Consensus 312 skpLl~ILe~L~~hk~-------a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~ 384 (684)
.+.|..||+.|..+.. +++|..||+...+|+||++|++||||.||+.||+++.|.++. +|+.||.|||.||+
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEE-GMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHH
Confidence 4678888888876554 999999999999999999999999999999999999999998 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 385 IFFRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 385 ~FN~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
+||+++|.+|.+|..|+.+|.+.|.++.+.
T Consensus 105 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 105 HYNEEGSQVYNDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999998854
No 28
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.89 E-value=2.4e-23 Score=200.87 Aligned_cols=102 Identities=24% Similarity=0.378 Sum_probs=96.4
Q ss_pred cCchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhC--CCccCcHHHHHHHHHHHHHHHhhhC
Q 005668 310 VKSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDR--GLYSNCFQKFFRDLLLLFNNFVIFF 387 (684)
Q Consensus 310 ~kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~--g~YsSi~~EF~rDL~LMF~NA~~FN 387 (684)
...+.|..||..|+.|+.+++|..||+. .+|+||+||++||||+||++||++ +.|.++. +|.+||+|||.||++||
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~-ef~~Dv~li~~Na~~yN 158 (184)
T 3o36_A 81 IDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQNCAEFN 158 (184)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHH-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 3446799999999999999999999995 499999999999999999999998 7899998 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhh
Q 005668 388 RKSSQEYAAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 388 ~pdS~vykaA~eLr~lf~k~msk~l~ 413 (684)
+++|.+|.+|..|+.+|++.|.+++|
T Consensus 159 ~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 159 EPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999874
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.89 E-value=3.4e-23 Score=190.77 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..||+.|..|+.+++|..||+...+|+||++|++||||+||+.||.+|.|.++. +|..||.|||.||++||+++|+
T Consensus 13 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~s~ 91 (130)
T 3dai_A 13 IFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVK-DYLRDIDLICSNALEYNPDRDP 91 (130)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHCCSSSH
T ss_pred HHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCh
Confidence 458888999999999999999999999999999999999999999999999999998 9999999999999999999987
Q ss_pred H----HHHHHHHHHHHHHHHHHHh
Q 005668 393 E----YAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 393 v----ykaA~eLr~lf~k~msk~l 412 (684)
+ +.+|..|++.+...|...+
T Consensus 92 ~~~~i~~~A~~L~~~~~~~i~~el 115 (130)
T 3dai_A 92 GDRLIRHRACALRDTAYAIIKEEL 115 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 7788888888888886444
No 30
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.87 E-value=3.5e-22 Score=196.44 Aligned_cols=102 Identities=22% Similarity=0.354 Sum_probs=97.5
Q ss_pred CchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhC---CCccCcHHHHHHHHHHHHHHHhhhC
Q 005668 311 KSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDR---GLYSNCFQKFFRDLLLLFNNFVIFF 387 (684)
Q Consensus 311 kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~---g~YsSi~~EF~rDL~LMF~NA~~FN 387 (684)
....|..||..|+.|+.+++|..||+. .+|+||+||++||||.||++||++ +.|.++. +|.+||+|||.||++||
T Consensus 82 ~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~-~f~~Dv~li~~Na~~yN 159 (207)
T 3u5n_A 82 DQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPD-DFVADVRLIFKNCERFN 159 (207)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHH-HHHHHHHHHHHHHHHHC
Confidence 346789999999999999999999987 799999999999999999999997 7999998 99999999999999999
Q ss_pred C-----------------CCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 388 R-----------------KSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 388 ~-----------------pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
+ +++.++.+|..|+.+|+.+|.++++.
T Consensus 160 ~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 160 EMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9 99999999999999999999999986
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.86 E-value=5.9e-22 Score=201.58 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=98.2
Q ss_pred CchHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 005668 311 KSEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKS 390 (684)
Q Consensus 311 kskpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pd 390 (684)
-...|..||+.|..|+.+++|..||+...+|+||++|++||||+||+.||.+|.|.++. +|..||.|||+||++||+++
T Consensus 15 l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~ 93 (265)
T 3uv5_A 15 LSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSATYNGPK 93 (265)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHhhhhhcCCCC
Confidence 34679999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 391 SQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 391 S~vykaA~eLr~lf~k~msk~l~k 414 (684)
|.+|.+|..|+.+|...|.+...+
T Consensus 94 s~i~~~A~~l~~~~~~~~~~~~~~ 117 (265)
T 3uv5_A 94 HSLTQISQSMLDLCDEKLKEKEDK 117 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999887654
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-22 Score=195.81 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHhCcCCcccccccCccccchhhhhhc--CCCCHHHHHHHHhCC---CccCcHHHHHHHHHHHHHHHhhh
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVR--QHIDLRTIQSRLDRG---LYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK--~PMDLsTIKkKLe~g---~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
...|..||..|+.|+.+|||..||+ |+||.||+ +||||+||++||+++ .|.++. +|.+||+|||+||++|
T Consensus 78 ~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~-eF~~Dv~Lif~N~~~y 152 (189)
T 2ro1_A 78 QRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQ-EFAQDVGRMFKQFNKL 152 (189)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHH-HHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999 68999998 899999999999999 999998 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
| +++.+|.+|..|+.+|+++|.++++.
T Consensus 153 N-~~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 153 T-EDKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp C-CSSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9 58889999999999999999999976
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6.1e-22 Score=183.55 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 313 EPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 313 kpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..|..||+.|..|+.+++|..| +|+||+||++||||+||+.||.++.|.++. +|..||.|||+||++||+++|+
T Consensus 15 ~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN~~~s~ 88 (131)
T 2dkw_A 15 LFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAK-DFLKDIDLICSNALEYNPDKDP 88 (131)
T ss_dssp HHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSH-HHHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCh
Confidence 4588899999999999999999 899999999999999999999999999998 9999999999999999999985
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhh
Q 005668 393 ----EYAAAQELRTLVIKEMTDMLR 413 (684)
Q Consensus 393 ----vykaA~eLr~lf~k~msk~l~ 413 (684)
+|.+|..|++.|...|...+.
T Consensus 89 ~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 89 GDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998876664
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.85 E-value=1.7e-21 Score=198.21 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=88.2
Q ss_pred HHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 005668 322 IRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELR 401 (684)
Q Consensus 322 L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~eLr 401 (684)
|..|+.+++|..||+...+|+||++|++||||.||+.||.+|.|.++. +|..||.|||.||++||+++|.+|.+|..|+
T Consensus 149 l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~ 227 (265)
T 3uv5_A 149 MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPESQYTKTAQEIV 227 (265)
T ss_dssp TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 667899999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 005668 402 TLVIKEMTDMLRK 414 (684)
Q Consensus 402 ~lf~k~msk~l~k 414 (684)
.+|.+.|..+...
T Consensus 228 ~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 228 NVCYQTLTEYDEH 240 (265)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=201.50 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 005668 312 SEPLVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSS 391 (684)
Q Consensus 312 skpLl~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS 391 (684)
...|..||+.|..|+.+++|..||+...+|+||+||++||||+||++||+++.|.++. +|..||.|||+||++||+++|
T Consensus 49 ~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~~s 127 (292)
T 3aad_A 49 SSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSATYNGPKH 127 (292)
T ss_dssp HHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHH-HHHHHHHHHHHHHHHHcCCch
Confidence 4678899999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 005668 392 QEYAAAQELRTLVIKEMTDML 412 (684)
Q Consensus 392 ~vykaA~eLr~lf~k~msk~l 412 (684)
.+|.+|..|+.+|.+.|.+..
T Consensus 128 ~i~~~A~~L~~~~~~~~~~~~ 148 (292)
T 3aad_A 128 SLTQISQSMLDLCDEKLKEKE 148 (292)
T ss_dssp HHHHHHTHHHHTTTTTGGGSH
T ss_pred HHHHHHHHHHHHHHhhhhcch
Confidence 999999999999988876643
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=198.16 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=88.0
Q ss_pred HHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 005668 321 MIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQEL 400 (684)
Q Consensus 321 ~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~eL 400 (684)
.|+.++.+++|..||+...+|+||+||++||||+||+.||.+|.|.++. +|..||.|||.||++||+++|.+|.+|..|
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L 259 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPESQYTKTAQEI 259 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 005668 401 RTLVIKEMTDMLR 413 (684)
Q Consensus 401 r~lf~k~msk~l~ 413 (684)
+.+|.+.|..+..
T Consensus 260 ~~~~~~~~~~~~~ 272 (292)
T 3aad_A 260 VNVCYQTLTEYDE 272 (292)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.83 E-value=5.6e-21 Score=199.23 Aligned_cols=87 Identities=26% Similarity=0.401 Sum_probs=84.7
Q ss_pred hCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 005668 324 SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTL 403 (684)
Q Consensus 324 ~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~eLr~l 403 (684)
.|+.+++|..||+...+|+||+||++||||+||++||+++.|.++. +|..||+|||+||++||+++|.+|.+|..|+.+
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 255 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005668 404 VIKEMTDM 411 (684)
Q Consensus 404 f~k~msk~ 411 (684)
|.+.|.+.
T Consensus 256 f~~~~~~~ 263 (311)
T 2r0y_A 256 FNYLIQKE 263 (311)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999884
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.83 E-value=5.9e-21 Score=202.36 Aligned_cols=87 Identities=26% Similarity=0.401 Sum_probs=84.3
Q ss_pred hCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 005668 324 SHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEYAAAQELRTL 403 (684)
Q Consensus 324 ~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vykaA~eLr~l 403 (684)
.|+.+|+|..||+...+|+||+||++||||.||+.||+++.|.++. +|..||+|||+||++||+++|.+|.+|..|+.+
T Consensus 227 ~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 227 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005668 404 VIKEMTDM 411 (684)
Q Consensus 404 f~k~msk~ 411 (684)
|+..|.+.
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999884
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.77 E-value=3.5e-19 Score=188.84 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=83.7
Q ss_pred HHHHHHHHHHh--CcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCcc-CcHHHHHHHHHHHHHHHhhhCCCC
Q 005668 314 PLVRFLGMIRS--HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYS-NCFQKFFRDLLLLFNNFVIFFRKS 390 (684)
Q Consensus 314 pLl~ILe~L~~--hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~Ys-Si~~EF~rDL~LMF~NA~~FN~pd 390 (684)
.|..+|+.|.. ..++++|..||+...+|+||+||++||||+||+.|| +.|. ++. +|..||.|||+||++||+++
T Consensus 82 ~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~-~f~~D~~li~~Na~~yN~~~ 158 (361)
T 2r10_A 82 FISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNEYD 158 (361)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHH-HHHHHHHHHHHHHHHHBCSS
T ss_pred HHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHH-HHHHHHHHHHHHHhhcCCCC
Confidence 34555666643 346899999999999999999999999999999999 4444 787 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 005668 391 SQEYAAAQELRTLVIKEMTDM 411 (684)
Q Consensus 391 S~vykaA~eLr~lf~k~msk~ 411 (684)
|.||.+|..|+.+|.++|.+.
T Consensus 159 s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 159 SLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998865
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.75 E-value=9.7e-19 Score=182.43 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=82.1
Q ss_pred HHHHHHHHh--CcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCcc-CcHHHHHHHHHHHHHHHhhhCCCCCH
Q 005668 316 VRFLGMIRS--HRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYS-NCFQKFFRDLLLLFNNFVIFFRKSSQ 392 (684)
Q Consensus 316 l~ILe~L~~--hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~Ys-Si~~EF~rDL~LMF~NA~~FN~pdS~ 392 (684)
..+|..+.. +.++++|..||+...+|+||+||++||||+||++|| ..|. ++. +|..||.|||+||++||+++|.
T Consensus 34 ~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~-~f~~D~~li~~Na~~yN~~~s~ 110 (311)
T 2r0y_A 34 SFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNEYDSL 110 (311)
T ss_dssp HHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHH-HHHHHHHHHHHHHHHccCCCCH
Confidence 334444443 347899999999999999999999999999999999 4555 787 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005668 393 EYAAAQELRTLVIKEMTDM 411 (684)
Q Consensus 393 vykaA~eLr~lf~k~msk~ 411 (684)
+|.+|..|+.+|.++|.+.
T Consensus 111 i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 111 IVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998875
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=149.49 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhCc------CCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhh
Q 005668 313 EPLVRFLGMIRSHR------LSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIF 386 (684)
Q Consensus 313 kpLl~ILe~L~~hk------~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~F 386 (684)
..|..||+.|..+. .+.+|...++.. |+||. ++||||.+|++||..|.|.++. +|..||.|||+||.+|
T Consensus 10 ~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld-~f~~D~~lmf~NAr~y 84 (147)
T 3iu6_A 10 ELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLD-LFQEHMFEVLERARRM 84 (147)
T ss_dssp HHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHh
Confidence 45778888888775 478999998876 78998 9999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 005668 387 FRKSSQEYAAAQELRTLVIKEMTDMLRK 414 (684)
Q Consensus 387 N~pdS~vykaA~eLr~lf~k~msk~l~k 414 (684)
|.++|.||.+|..|+.+|...+.++...
T Consensus 85 N~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 85 NRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999998876
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.48 E-value=2.9e-14 Score=139.28 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=82.4
Q ss_pred HHHHHHHHHhCcCCcccccccCccccchhhhhhcCCCCHHHHHHHHhCCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHH
Q 005668 315 LVRFLGMIRSHRLSSHFERRLRSQESERYKKLVRQHIDLRTIQSRLDRGLYSNCFQKFFRDLLLLFNNFVIFFRKSSQEY 394 (684)
Q Consensus 315 Ll~ILe~L~~hk~a~pF~~PVD~qe~PdYyeIIK~PMDLsTIKkKLe~g~YsSi~~EF~rDL~LMF~NA~~FN~pdS~vy 394 (684)
|..||..|..|+.++||... .++.||||.||++||+.|.|.++. +|..||.|||.||+.||.+++.+.
T Consensus 80 l~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~-eF~~Dv~lIf~n~~~~~~~~~e~~ 147 (183)
T 3lqh_A 80 LKQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVL-EFSDDIVKIIQAAINSDGGQPEIK 147 (183)
T ss_dssp HHHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHhhccCCChhhh
Confidence 78899999999999999873 259999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 005668 395 AAAQELRTLVIKEMTDMLRKQQ 416 (684)
Q Consensus 395 kaA~eLr~lf~k~msk~l~k~~ 416 (684)
.++..|+.+|.+.|.+++|-+-
T Consensus 148 ~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 148 KANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSC
T ss_pred hhhhHHHHHHHHHHHHHCCCCC
Confidence 9999999999999999998644
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.55 E-value=0.0001 Score=59.22 Aligned_cols=47 Identities=38% Similarity=0.636 Sum_probs=41.3
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHH-hhcCCCCCCCHHHHHHHHHHH
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQ-NRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~-~r~~~~~~~t~~~C~~k~~~l 65 (684)
....|..-|+++|.-||..||..+|..||..|. .| |+..|+.+|..+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~R-------t~~qcr~r~~~~ 55 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNAR-------TKEECRDHYLKT 55 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSC-------CHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCC-------CHHHHHHHHHHH
Confidence 356799999999999999999999999999997 56 479999999754
No 44
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.32 E-value=0.00024 Score=57.26 Aligned_cols=47 Identities=21% Similarity=0.491 Sum_probs=41.3
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
....|..=|+.+|.-||..||..+|..||..|..|+ +..|+.+|..+
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt-------~~qcr~r~~~~ 53 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKT-------KEECEKHYMKY 53 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSC-------HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCC-------HHHHHHHHHHH
Confidence 346799999999999999999999999999997664 68999999754
No 45
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.27 E-value=0.00021 Score=56.03 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=42.0
Q ss_pred ccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 005668 14 QQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRR 67 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~ 67 (684)
..|..=|+.+|..+|..||+.+|..||..|. ....|+..|+.+|..|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~-----~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYK-----FNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC-----CSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-----CCCCCHHHHHHHHHHHHc
Confidence 4688889999999999999999999999874 113578999999998865
No 46
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.20 E-value=0.00035 Score=57.43 Aligned_cols=51 Identities=20% Similarity=0.470 Sum_probs=43.1
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRR 67 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~ 67 (684)
-...|..-|+-+|.-+|.+||..+|..||..+- ....|+..|+.||+-|.+
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~-----~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP-----FVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC-----CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC-----CCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999999999998742 124588999999998864
No 47
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.08 E-value=0.00037 Score=54.17 Aligned_cols=45 Identities=29% Similarity=0.589 Sum_probs=39.5
Q ss_pred ccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 14 QQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
..|..=|+.+|.-+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 48 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNR-------TDVQCQHRWQKV 48 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTC-------CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCC-------CHHHHHHHHHHH
Confidence 578888999999999999999999999887544 679999999865
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.01 E-value=0.00033 Score=59.92 Aligned_cols=48 Identities=23% Similarity=0.478 Sum_probs=41.9
Q ss_pred ccccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 10 SQQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 10 ~~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
......|..=|+++|.-||..|| .+|..||..|..|| +..|+.+|..|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT-------~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRT-------QDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCC-------HHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCC-------HHHHHHHHHHh
Confidence 34567899999999999999999 99999999997665 69999999754
No 49
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.84 E-value=0.00073 Score=54.07 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=40.7
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
....|.--|+.+|.-+|..||+.+|..||..|..| |+..|+.+|..+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNR-------TDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSS-------CHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCC-------CHHHHHHHHHHH
Confidence 34679999999999999999999999999987544 579999999864
No 50
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.69 E-value=0.0008 Score=52.36 Aligned_cols=44 Identities=25% Similarity=0.599 Sum_probs=38.5
Q ss_pred ccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 14 QQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
..|..=|+.+|.-+|..||..+|..||..|..| |+..|+.+|..
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~R-------t~~qcr~Rw~~ 47 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHN 47 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTC-------CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCC-------CHHHHHHHHHH
Confidence 578888999999999999999999999876544 67999999975
No 51
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.65 E-value=0.0015 Score=53.77 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=44.2
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhh
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRF 69 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~ 69 (684)
....|..=|+.+|..+|..||+..|..||..|. ....|+..|+.+|..+.+.-
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-----~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK-----FNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC-----CSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC-----cCCCCHHHHHHHHHHHcCCC
Confidence 346799999999999999999999999999874 11457899999999886653
No 52
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0018 Score=53.40 Aligned_cols=46 Identities=24% Similarity=0.562 Sum_probs=39.9
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
...|.-=|+.+|..+|..||+.+|..||..|..| |+..|+.+|..+
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~R-------t~~qcr~Rw~~~ 54 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRK-------SAKQCKARWYEW 54 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTC-------CHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCC-------CHHHHHHHHHHH
Confidence 3578888999999999999999999999988644 579999999763
No 53
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.38 E-value=0.0032 Score=52.29 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=45.2
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcC
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTV 71 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~ 71 (684)
....|.--|+.+|.-||..||. +|..||..|..|+ +..|+.+|..+.++..-
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt-------~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRT-------VLQVKSYARQYFKNKVK 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSC-------HHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999 9999999887775 68999999988777644
No 54
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.08 E-value=0.0036 Score=53.02 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=43.4
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhc
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFT 70 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~ 70 (684)
...|.-=|+.+|.-+|..||.. |..||..| .|| +..|+.+|.-|++.+.
T Consensus 23 k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt-------~~q~knRw~~L~~~~~ 71 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRS-------ASSVKDRCRLMKDTCN 71 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSC-------HHHHHHHHHHCSCCCS
T ss_pred CCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCC-------HHHHHHHHHHHHHHcc
Confidence 4678888999999999999987 99999999 886 5899999999987654
No 55
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.93 E-value=0.0098 Score=48.39 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=41.2
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhh
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRF 69 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~ 69 (684)
...|.-=|+.+|..+|..||. .|..||. +-.| |+..|+.+|..|-+.-
T Consensus 9 k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gR-------t~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGR-------TAAQCLEHYEFLLDKA 56 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSS-------CHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCc-------CHHHHHHHHHHHhChH
Confidence 457999999999999999999 9999999 7655 5799999999886554
No 56
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.77 E-value=0.008 Score=53.16 Aligned_cols=44 Identities=30% Similarity=0.593 Sum_probs=38.6
Q ss_pred ccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 14 QQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
..|..=|+-+|.-+|..||+.+|..||..|-.| |+..|+.+|..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~R-------t~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITR-------NPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTS-------CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCC-------CHHHHHHHHHH
Confidence 468888999999999999999999999988655 57999999975
No 57
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=94.74 E-value=0.0017 Score=56.46 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=45.2
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcC
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTV 71 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~ 71 (684)
....|.--|+.||.-+|..||. +|..||.-|..|| ...|+.+|..+.+|+.-
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt-------~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKT-------VSQCKNFYFNYKKRQNL 66 (89)
Confidence 4567999999999999999999 7999999988776 47999999988888753
No 58
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=95.73 E-value=0.0077 Score=52.09 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=42.6
Q ss_pred cchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhh
Q 005668 15 QWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRF 69 (684)
Q Consensus 15 ~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~ 69 (684)
.|..=|+.+|.-+|.+||.+.|..|+..-- ......|...|+.||+-|.++-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~---~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAF---DNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHC---TTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhc---cccCCCCHHHHHHHHHHHHHhc
Confidence 588889999999999999999999998531 1123568999999999988643
No 59
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.70 E-value=0.0093 Score=52.74 Aligned_cols=51 Identities=25% Similarity=0.483 Sum_probs=44.3
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcC
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTV 71 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~ 71 (684)
...|.--|+.+|.-+|..||. .|..||..|..|| +..|+.+|..|.++..-
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt-------~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNRS-------DNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSC-------HHHHHHHHHHHHHHHHS
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCCC-------HHHHHHHHHHHHhhHHH
Confidence 468988899999999999997 7999999886654 68999999999988643
No 60
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.62 E-value=0.0077 Score=50.13 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=41.1
Q ss_pred ccccchhhHHHHHHHHHhhccC-----CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 005668 12 QQQQWGTLEELLLACAVNRHGT-----RSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRR 67 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt-----~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~ 67 (684)
....|.-=|+.+|--||..||. .+|..||..|..|| +..|+.+|+.+-.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt-------~~qcr~r~~~~l~ 60 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRT-------AKQVASQVQKYFI 60 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSC-------HHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCC-------HHHHHHHHHHHHH
Confidence 3467998999999999999997 88999999997665 6899999944433
No 61
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.45 E-value=0.024 Score=52.44 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=46.8
Q ss_pred cccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhh
Q 005668 11 QQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRF 69 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~ 69 (684)
-....|..-|+-+|.-+|.+||.+.|..|+..+-. .....|...|+.||+.|.+.-
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~---~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFE---NVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHS---SSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhcc---ccCCCCHHHHHHHHHHHHhhc
Confidence 45678999999999999999999999999986541 224568999999999998754
No 62
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.26 E-value=0.0061 Score=51.53 Aligned_cols=53 Identities=19% Similarity=0.396 Sum_probs=44.5
Q ss_pred cccccchhhHHHHHHHHHhhcc---CCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhc
Q 005668 11 QQQQQWGTLEELLLACAVNRHG---TRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFT 70 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHG---t~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~ 70 (684)
.....|.--|+.+|--||..|| ...|..||..|-. -|+..|+.+|..|.+-++
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-------RT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-------KSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-------SCHHHHHHHHHHHHSSCC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-------CCHHHHHHHHHHHHHccc
Confidence 4556799999999999999999 4689999977643 568999999999977654
No 63
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.19 E-value=0.0089 Score=52.34 Aligned_cols=46 Identities=22% Similarity=0.552 Sum_probs=39.1
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
...|..=|+-+|.-+|..||..+|..||..|-.| |+..|+.+|..+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTC-------CHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCC-------CHHHHHHHHHhc
Confidence 3578888999999999999999999999876544 679999999763
No 64
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=95.11 E-value=0.013 Score=53.39 Aligned_cols=47 Identities=32% Similarity=0.668 Sum_probs=39.9
Q ss_pred cccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 11 QQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
.-...|..=|+-+|.-||..||+ +|..||..|-.| |+..|+.+|...
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 55 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNR-------NARQCRDRWKNY 55 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTC-------CHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCC-------CHHHHHHHHhhh
Confidence 34567999999999999999999 999999876554 578999999864
No 65
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.07 E-value=0.0094 Score=54.53 Aligned_cols=46 Identities=24% Similarity=0.537 Sum_probs=38.9
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
.+.|..=|+-+|.-+|..||+.+|..||..|-.| |+..|+.+|...
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~R-------t~~qcr~Rw~~~ 47 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNR-------SPKQCRERWFNH 47 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTS-------CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCC-------CHHHHHHHHhhc
Confidence 3568888999999999999999999999877554 579999999653
No 66
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.03 E-value=0.023 Score=52.48 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=46.5
Q ss_pred cccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhh
Q 005668 11 QQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRF 69 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~ 69 (684)
-.-..|..-|+-+|.-+|.+||...|..||..+-. .....|...|+.||+.|.+.-
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~---~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD---NADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS---CCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc---ccCCCCHHHHHHHHHHHHhhh
Confidence 34568999999999999999999999999988732 123568899999999998753
No 67
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=94.85 E-value=0.019 Score=51.75 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=45.9
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcC
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTV 71 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~ 71 (684)
....|..-|+-+|..+|.+||...|..|+..+- ......|...|+.||+.|.++-+-
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~---~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAF---EDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSS---SSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc---cccCCCCHHHHHHHHHHHHhhccC
Confidence 456899999999999999999999999986431 012356999999999999976543
No 68
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=94.72 E-value=0.016 Score=52.70 Aligned_cols=52 Identities=23% Similarity=0.461 Sum_probs=43.9
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcCC
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTVK 72 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~~ 72 (684)
...|.-=|+.+|.-+|..|| ..|..||..|..| |...|+.+|..|.+++.-.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gR-------t~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGR-------TDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTC-------CHHHHHHHHHHHHHHTTC-
T ss_pred cccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCC-------CHHHHHHHHHHHHHhcCCC
Confidence 45799999999999999999 5799999765544 5799999999999998654
No 69
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=94.57 E-value=0.014 Score=51.03 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=40.6
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhh
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRR 68 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R 68 (684)
....|.--|+.+|.-||..||. .|..||..|.. .|+..|+.+|..|.+|
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~g-------Rt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPG-------RTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTT-------CCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-------CCHHHHHHHHHHHHhc
Confidence 3467988899999999999996 79999975543 5679999999998776
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=94.37 E-value=0.032 Score=56.50 Aligned_cols=52 Identities=31% Similarity=0.536 Sum_probs=46.0
Q ss_pred cccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhc
Q 005668 11 QQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFT 70 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~ 70 (684)
.....|..-|.+|+-.|+..|| .+|..||.-|.+|| ...|+..|...++||.
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT-------~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKS-------VVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCC-------HHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCC-------HHHHHHHHHHHHHHhh
Confidence 4677999999999999999999 58999999998776 5899999988888884
No 71
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=94.37 E-value=0.022 Score=51.70 Aligned_cols=46 Identities=22% Similarity=0.585 Sum_probs=39.7
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
....|..=|+-+|.-+|..||..+|..||..|-.| |+..|+.+|..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGR-------IGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSC-------CHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCC-------cHHHHHHHHHH
Confidence 34678888999999999999999999999987544 57899999985
No 72
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=94.04 E-value=0.037 Score=48.83 Aligned_cols=51 Identities=18% Similarity=0.418 Sum_probs=42.7
Q ss_pred ccccchhhHHHHHHHHHhhcc---CCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhh
Q 005668 12 QQQQWGTLEELLLACAVNRHG---TRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRF 69 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHG---t~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~ 69 (684)
....|..=|+.+|-.||..|| ...|..||..|-.| |+..|+.+|..|....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGR-------T~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGR-------TPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTC-------CHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCC-------CHHHHHHHHHHHHHHH
Confidence 346799999999999999998 56799999988655 5799999999997653
No 73
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=92.75 E-value=0.03 Score=50.81 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=40.7
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhh
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRR 68 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R 68 (684)
...|.-=|+.+|.-+|..||. .|..||..|..| |+..|+.+|..|.+|
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGR-------TDNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHGGGSTTC-------CHHHHHHHHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHHHHCCCC-------CHHHHHHHHHHHHhc
Confidence 467988899999999999996 799999765444 679999999988765
No 74
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=92.67 E-value=0.027 Score=52.84 Aligned_cols=45 Identities=27% Similarity=0.570 Sum_probs=6.9
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
...|..=|+-+|.-+|..||+.+|..||..|-.|+ +..|+.+|..
T Consensus 6 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt-------~~qcr~Rw~~ 50 (159)
T 1h89_C 6 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRT-------DVQCQHRWQK 50 (159)
T ss_dssp --------------------------------------------CHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCC-------HHHHHHHHHH
Confidence 45688889999999999999999999999887665 5789999974
No 75
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=92.51 E-value=0.058 Score=50.60 Aligned_cols=47 Identities=21% Similarity=0.527 Sum_probs=40.1
Q ss_pred ccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 005668 12 QQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEI 65 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l 65 (684)
....|..=|+-+|.-+|..||..+|..||..|..| |+..|+.+|..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~R-------t~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGR-------IGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTC-------CHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCC-------CHHHHHHHHHHH
Confidence 35689888999999999999999999999877544 579999999753
No 76
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.89 E-value=0.12 Score=41.73 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=40.3
Q ss_pred cccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 005668 11 QQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIR 66 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~ 66 (684)
+....|..=|.-||-.|+..|| .+|..||.-|..|+ +..|...|-.-+
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt-------~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKS-------VPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSC-------HHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCC-------HHHHHHHHHHhc
Confidence 5678999999999999999999 69999997776655 578999886544
No 77
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=91.87 E-value=0.13 Score=43.75 Aligned_cols=56 Identities=18% Similarity=0.408 Sum_probs=42.1
Q ss_pred ccchhhHHHHHHHHHhhcc---------CCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcCC
Q 005668 14 QQWGTLEELLLACAVNRHG---------TRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTVK 72 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHG---------t~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~~ 72 (684)
..|+-=|=+||.-+..=|- ..-|..||..|+..-- ..|+.-|+.||..|+++|-.-
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~---~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF---DRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 4576666666666553222 2379999999998753 579999999999999999863
No 78
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=91.72 E-value=0.11 Score=44.02 Aligned_cols=53 Identities=28% Similarity=0.510 Sum_probs=42.9
Q ss_pred cccchhhHHHHHHHHHhhccC---CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcCC
Q 005668 13 QQQWGTLEELLLACAVNRHGT---RSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTVK 72 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt---~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~~ 72 (684)
...|.-=|+.+|=.|+.-++. ..|+.||.-|-.|+ ++.|+.+|..|.+=|..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT-------~eE~~~hY~~l~~~~~s~ 63 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRS-------PEECQRKYMENPRGKGSQ 63 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSC-------HHHHHHHHHHSSSSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCC-------HHHHHHHHHHHHhccccc
Confidence 457988899999888876654 56999998887665 799999999998777654
No 79
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=91.61 E-value=0.23 Score=41.71 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=43.0
Q ss_pred cccccchhhHHHHHHHHHhhccC---CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhh
Q 005668 11 QQQQQWGTLEELLLACAVNRHGT---RSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRF 69 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt---~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~ 69 (684)
.....|..=|.-+|-.||..|+. .-|..||..| .| |+..|+.+|..|+.-+
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gR-------t~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GR-------SVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TS-------CHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CC-------CHHHHHHHHHHHHHhc
Confidence 34567998899999999999983 5599999998 44 6899999999998875
No 80
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=91.18 E-value=0.076 Score=48.47 Aligned_cols=51 Identities=20% Similarity=0.428 Sum_probs=40.4
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-hhhcC
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIR-RRFTV 71 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~-~R~~~ 71 (684)
...|.-=|+.+|..+|..||. .|..||..|..| |...|+.+|..+- +++..
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gR-------t~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGR-------TDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTC-------CHHHHHHHHHHTTGGGCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCC-------CHHHHHHHHHHHHHHHhhc
Confidence 357888899999999999995 699999765544 5789999997654 55544
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=84.44 E-value=0.64 Score=51.60 Aligned_cols=52 Identities=29% Similarity=0.505 Sum_probs=44.8
Q ss_pred cccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhc
Q 005668 11 QQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFT 70 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~ 70 (684)
.....|..=|-+|+--||..||- +|..||.-|.+|+ +..|+.-|..-++||.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT-------~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKS-------VVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCC-------HHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCC-------HHHHHHHHHHHHHHhC
Confidence 46789999999999999999996 9999999988876 5899999987677763
No 82
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=69.16 E-value=3.6 Score=42.08 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=38.4
Q ss_pred ccchhhHHHHHHHHHhhccCCC-----chHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 005668 14 QQWGTLEELLLACAVNRHGTRS-----WDSIAMEVQNRSSALSSLTPQSCRDKFNEIR 66 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHGt~~-----WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~ 66 (684)
..|.--|+.+|.-+|.+||... |..||.-|- .-|...|+.+|+-+-
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-------GRT~nsIRnRw~~~L 59 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-------NHTGNSIRHRFRVYL 59 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-------TSCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 4799999999999999999975 999996444 456799999998743
No 83
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=66.95 E-value=10 Score=31.30 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=45.6
Q ss_pred ccccccchhhHHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhc
Q 005668 10 SQQQQQWGTLEELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFT 70 (684)
Q Consensus 10 ~~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~ 70 (684)
++....|..=|+=+|--.|..+|- .|..|+..- +.....|...-+.||+.|.++=.
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y----~f~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSF----PFQKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHS----CCCTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhC----CCccCcccchHHHHHHHHHhccc
Confidence 356788999999999999999998 999999654 22235588999999999998754
No 84
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=65.99 E-value=3.9 Score=39.50 Aligned_cols=29 Identities=28% Similarity=0.594 Sum_probs=23.4
Q ss_pred cchhhHHHHHHHHHhhccCCCchHHHHHH
Q 005668 15 QWGTLEELLLACAVNRHGTRSWDSIAMEV 43 (684)
Q Consensus 15 ~WGTwEELLLacAV~RHGt~~WdsVA~e~ 43 (684)
.|+-=|.-.|.+.|.+||.++|+.|-+..
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 45555889999999999999999776543
No 85
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=52.71 E-value=6.9 Score=40.42 Aligned_cols=29 Identities=28% Similarity=0.451 Sum_probs=24.8
Q ss_pred ccchhhHHHHHHHHHhhccCCCchHHHHH
Q 005668 14 QQWGTLEELLLACAVNRHGTRSWDSIAME 42 (684)
Q Consensus 14 ~~WGTwEELLLacAV~RHGt~~WdsVA~e 42 (684)
..||.=|.--|..-|.+||+++|+.|-+.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 45887788888888999999999999764
No 86
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.37 E-value=12 Score=30.12 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=37.4
Q ss_pred cccchhhHHHHHHHHHhhccCCCchHHHHH-HHhhcCCCCCCCHHHHHHHHHHHH
Q 005668 13 QQQWGTLEELLLACAVNRHGTRSWDSIAME-VQNRSSALSSLTPQSCRDKFNEIR 66 (684)
Q Consensus 13 ~~~WGTwEELLLacAV~RHGt~~WdsVA~e-~~~r~~~~~~~t~~~C~~k~~~l~ 66 (684)
...|..=|-.++-.|+..||- +|..||.+ |..|+ ...|..-|-.-+
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt-------~~~~v~fYY~wK 55 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKE-------TGELITFYYYWK 55 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSC-------HHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCc-------HHHHHHHHhccc
Confidence 468988899999999999998 89999986 66554 688988886544
No 87
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=44.24 E-value=12 Score=29.60 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Q 005668 87 LRQIRVQELRAEVQRRDVSI-VSLELKVKRLEEERE 121 (684)
Q Consensus 87 LRKlRVAELRRever~d~SI-gSLqsKvk~L~eere 121 (684)
|-++.|+|||.+|.+..+++ |.=+-=|++|.+.-+
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 56899999999999999986 444556788876633
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=41.70 E-value=38 Score=36.59 Aligned_cols=36 Identities=8% Similarity=0.253 Sum_probs=32.0
Q ss_pred cccccchhhHHHHHHHHHhhccC---CCchHHHHHHHhh
Q 005668 11 QQQQQWGTLEELLLACAVNRHGT---RSWDSIAMEVQNR 46 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt---~~WdsVA~e~~~r 46 (684)
+.+-.|.--|.=.|.|.|.+||. ..|+.|-.+++.-
T Consensus 226 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~ 264 (374)
T 2y9y_A 226 NNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDC 264 (374)
T ss_dssp SSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhC
Confidence 35668988999999999999999 9999999999865
No 89
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=38.91 E-value=33 Score=36.03 Aligned_cols=35 Identities=11% Similarity=0.472 Sum_probs=31.2
Q ss_pred ccccchhhHHHHHHHHHhhccC---CCchHHHHHHHhh
Q 005668 12 QQQQWGTLEELLLACAVNRHGT---RSWDSIAMEVQNR 46 (684)
Q Consensus 12 ~~~~WGTwEELLLacAV~RHGt---~~WdsVA~e~~~r 46 (684)
-+-.|.--|.=+|.|.|.+||. .+|+.|-.+++.-
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~ 248 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRAS 248 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhC
Confidence 4567888899999999999999 9999999998864
No 90
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=38.48 E-value=13 Score=29.82 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Q 005668 87 LRQIRVQELRAEVQRRDVSI-VSLELKVKRLEEERE 121 (684)
Q Consensus 87 LRKlRVAELRRever~d~SI-gSLqsKvk~L~eere 121 (684)
|-++.|+|||.++.+..+++ |.=+-=|++|.+-=+
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~ 45 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLE 45 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 56899999999999999986 444556788877644
No 91
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=36.28 E-value=27 Score=29.87 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhh
Q 005668 84 VDQLRQIRVQELRAEVQRRDVSI-VSLELKVKRLEEEREK 122 (684)
Q Consensus 84 ~EELRKlRVAELRRever~d~SI-gSLqsKvk~L~eere~ 122 (684)
...|-++.|+|||.+|.+..+++ |.=+.=|+||.+.-+.
T Consensus 23 ~~~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 23 PANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp CTTTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred hHHHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 34567899999999999999986 5555678999887553
No 92
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=31.22 E-value=29 Score=24.12 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHH
Q 005668 82 PLVDQLRQIRVQELRAE 98 (684)
Q Consensus 82 ~W~EELRKlRVAELRRe 98 (684)
+=++.||..|+++|...
T Consensus 5 ~ELeair~~rl~~lq~~ 21 (27)
T 1yyb_A 5 EELEALRRQRLAELQAK 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45899999999999764
No 93
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.76 E-value=66 Score=26.42 Aligned_cols=16 Identities=6% Similarity=0.293 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhcC
Q 005668 56 QSCRDKFNEIRRRFTV 71 (684)
Q Consensus 56 ~~C~~k~~~l~~R~~~ 71 (684)
...|+-|+.|-.++-.
T Consensus 12 ~eiRaQYE~ia~knr~ 27 (77)
T 3trt_A 12 RDVRQQYESVAAKNLQ 27 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH
Confidence 3556778888877765
No 94
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.37 E-value=38 Score=27.90 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=38.0
Q ss_pred cccccchhhHHHHHHHHHhhccCCCchHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHh
Q 005668 11 QQQQQWGTLEELLLACAVNRHGTRSWDSIAME-VQNRSSALSSLTPQSCRDKFNEIRR 67 (684)
Q Consensus 11 ~~~~~WGTwEELLLacAV~RHGt~~WdsVA~e-~~~r~~~~~~~t~~~C~~k~~~l~~ 67 (684)
+....|.-=|--++-.|+..||- +|..|+.+ |.+| |+..|-.-|-.-++
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~K-------t~~~~v~fYY~wKk 55 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWK-------SLTSIIEYYYMWKT 55 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSS-------CHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCC-------CHHHHHHHHHhhcC
Confidence 44567887788899999999999 79999974 5544 57899988875443
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=29.22 E-value=56 Score=34.28 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=41.2
Q ss_pred ccchhh---HHHHHHHHHhhccCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcC
Q 005668 14 QQWGTL---EELLLACAVNRHGTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTV 71 (684)
Q Consensus 14 ~~WGTw---EELLLacAV~RHGt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~ 71 (684)
++.++| +-..+..|+-+||-.+|+.||+||-.. |++.-+.=|..|-.||..
T Consensus 108 eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~K-------t~eEV~~Y~~vFw~ry~e 161 (304)
T 1ofc_X 108 QGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGK-------TPEEVIEYNAVFWERCTE 161 (304)
T ss_dssp SSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTC-------CHHHHHHHHHHHHHHGGG
T ss_pred hhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHhHHH
Confidence 445555 778888999999999999999999644 467778888999999954
No 96
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=28.44 E-value=30 Score=27.34 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhh
Q 005668 87 LRQIRVQELRAEVQRRDVSI-VSLELKVKRLEEEREK 122 (684)
Q Consensus 87 LRKlRVAELRRever~d~SI-gSLqsKvk~L~eere~ 122 (684)
|-++.|+|||.+|....+++ |.=.-=|++|.+.=+.
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~ 41 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEE 41 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHh
Confidence 56889999999999999986 5555578888876443
No 97
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.02 E-value=64 Score=27.74 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 005668 92 VQELRAEVQRRDVSIVSLELKVKRLEEER 120 (684)
Q Consensus 92 VAELRRever~d~SIgSLqsKvk~L~eer 120 (684)
+.-||++|.-.-+....||.+|++|.+|=
T Consensus 51 ~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 51 LQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488999999999999999999999983
No 98
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=26.34 E-value=94 Score=28.00 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 005668 92 VQELRAEVQRRDVSIVSLELKVKRLEEER 120 (684)
Q Consensus 92 VAELRRever~d~SIgSLqsKvk~L~eer 120 (684)
+.-||++|...-+...-||.+|+.|++|=
T Consensus 71 i~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 71 LQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999999999999984
No 99
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.26 E-value=61 Score=27.13 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 005668 87 LRQIRVQELRAEVQRRDVSIVSLELKVKRL 116 (684)
Q Consensus 87 LRKlRVAELRRever~d~SIgSLqsKvk~L 116 (684)
.+..|+.||..+|+..|.-|+-|+..+.++
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999888765
No 100
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.67 E-value=1.4e+02 Score=26.78 Aligned_cols=70 Identities=21% Similarity=0.392 Sum_probs=50.7
Q ss_pred CCchHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhcCCCCCCcCCccchHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 005668 34 RSWDSIAMEVQNRSSALSSLTPQSCRDKFNEIRRRFTVKNGAESTSLVPLVDQLRQIRVQELRAEVQRRDVSIVSLELKV 113 (684)
Q Consensus 34 ~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~l~~R~~~~~~~~~~~~~~W~EELRKlRVAELRRever~d~SIgSLqsKv 113 (684)
.++..|=.-+++-+ +..+|-+.--+-|-+|-.||+- .-+|=+.||+. -..++..|-.|+.+|
T Consensus 13 KdFSe~YE~~h~Er--L~~mSKqELIqEYl~LE~~~s~-----------le~e~~rlr~~-----~~~~~~~v~eLe~ev 74 (104)
T 3s9g_A 13 RDFSETYERYHTES--LQNMSKQELIKEYLELEKSLSR-----------MEDENNRLRLE-----SKRLDARVRELELEL 74 (104)
T ss_dssp -CCHHHHHHHHHHH--HHTSCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH-----hccchhhHHHHHHHH
Confidence 44555544444443 3467788888999999999985 56777777766 344578999999999
Q ss_pred HHHHHHHh
Q 005668 114 KRLEEERE 121 (684)
Q Consensus 114 k~L~eere 121 (684)
++|..|=.
T Consensus 75 erL~~ENq 82 (104)
T 3s9g_A 75 DRLRAENL 82 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998843
No 101
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.37 E-value=63 Score=25.27 Aligned_cols=53 Identities=6% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcCCccchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 005668 55 PQSCRDKFNEIRRRFTVKNGAESTSLVPLVDQLRQIRVQELRAEVQRRDVSIVSLELKVKRL 116 (684)
Q Consensus 55 ~~~C~~k~~~l~~R~~~~~~~~~~~~~~W~EELRKlRVAELRRever~d~SIgSLqsKvk~L 116 (684)
-..|...|.++..+|.-- ..=|+++ +.++-.+..+|+.+..+|..|++.|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~--------~~~~~~~-k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLK--------TDEFLKA-KEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555431 1122332 3467778888999999999999998865
No 102
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=23.49 E-value=33 Score=23.42 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=12.9
Q ss_pred hhhhcHHHHHHHHhhC
Q 005668 557 KKKLGAASFLKRMKQN 572 (684)
Q Consensus 557 ~KK~~aa~FLkR~k~n 572 (684)
-||..--||+||||-+
T Consensus 8 ekKinfndFIKRLK~g 23 (24)
T 3si5_X 8 ENKIDFNDFIKRLKTG 23 (26)
T ss_pred hhhccHHHHHHHHhcC
Confidence 4667889999999854
No 103
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.28 E-value=49 Score=24.94 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=17.1
Q ss_pred ccchhhHHHHHHHHHHHHhh
Q 005668 103 DVSIVSLELKVKRLEEEREK 122 (684)
Q Consensus 103 d~SIgSLqsKvk~L~eere~ 122 (684)
-.-|.-|+.++..|++|+|+
T Consensus 14 keQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999985
No 104
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=23.27 E-value=62 Score=28.01 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHHHHH
Q 005668 354 RTIQSRLDRGLYSNCFQKFFRDLLLLFNNF 383 (684)
Q Consensus 354 sTIKkKLe~g~YsSi~~EF~rDL~LMF~NA 383 (684)
.-|...+..|.|.|.. |+++|+..++..-
T Consensus 16 ~~i~~~V~sG~Y~s~S-EviR~~lR~l~~r 44 (88)
T 3kxe_C 16 AFIDSQVADGRYGSAS-EVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHTTTSCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 4688999999999999 9999988887653
No 105
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=23.04 E-value=33 Score=27.48 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=31.8
Q ss_pred chhhHHHHHHHHHhhc--------cCCCchHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 005668 16 WGTLEELLLACAVNRH--------GTRSWDSIAMEVQNRSSALSSLTPQSCRDKFNE 64 (684)
Q Consensus 16 WGTwEELLLacAV~RH--------Gt~~WdsVA~e~~~r~~~~~~~t~~~C~~k~~~ 64 (684)
+.-=|+.+|.+-|..| |..-|..+|.+. . ..-|-++||.+|..
T Consensus 5 FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~---~---~~HtwqSwRdRy~k 55 (59)
T 1fex_A 5 FTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS---L---TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC---S---SSCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH---C---CCCCHHHHHHHHHH
Confidence 3344788999999999 888898887621 1 13477999999964
Done!