BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005670
(684 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 255/348 (73%), Gaps = 24/348 (6%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
PTP EI LD +VIGQE+AKKVL+VAVYNHY R+ N G++S +
Sbjct: 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN--------GDTS---------N 45
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+A YVGEDVE+I+ KLL
Sbjct: 46 GVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQ+GIVYID++DKI++K+++ +I+RDVSGEGVQQALLK++EGTV VP +G
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DT ILFICGGAF ++K IS R + S IGFGA V+A +D
Sbjct: 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAK------SDK 219
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
L+ VE DLI +GLIPEF+GR PV+ +L L+E L+Q+L EPKNAL KQY+ +
Sbjct: 220 ASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQAL 279
Query: 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611
F + GV L F + AL IAKKA+++ TGARGLRS++E L+D MY++P
Sbjct: 280 FNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 255/348 (73%), Gaps = 24/348 (6%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
PTP EI LD +VIGQE+AKKVL+VAVYNHY R+ N G++S +
Sbjct: 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN--------GDTS---------N 45
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+A YVGEDVE+I+ KLL
Sbjct: 46 GVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQ+GIVYID++DKI++K+++ +I+RDVSGEGVQQALLK++EGTV VP +G
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DT ILFICGGAF ++K IS R + S IGFGA V+A +D
Sbjct: 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAK------SDK 219
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
L+ VE DLI +GLIPEF+GR PV+ +L L+E L+Q+L EPKNAL KQY+ +
Sbjct: 220 ASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQAL 279
Query: 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611
F + GV L F + AL IAKKA+++ TGARGLRS++E L+D MY++P
Sbjct: 280 FNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 350 bits (897), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 174/350 (49%), Positives = 254/350 (72%), Gaps = 11/350 (3%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P PKE+ LD +VIGQE+AKKV SVAVYNHY R+ + K+ + S+ + ++
Sbjct: 9 IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLE-- 66
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTL+A+TLA+++++P I+DAT+LT+A YVGEDVE+IL +LL
Sbjct: 67 EVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLL 126
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
SD+NV AQ+GIV+IDE+DKI++ +E+ +I+RDVSGEGVQQALLK++EG++VN+P KG
Sbjct: 127 QASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKG 186
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504
RKHP G+ IQIDT DILFIC GAF + + I +R + +GF +
Sbjct: 187 GRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE-------- 238
Query: 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564
+++ V++ DL+ YGLIPE +GR PVL +L +++ +V +L +PKNAL KQY+++F
Sbjct: 239 -QEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLF 297
Query: 565 QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVR 614
+M+ V L F E A++ IA+ A+ + TGARGLR+++E+ +D M+++P ++
Sbjct: 298 KMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLK 347
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 170/347 (48%), Gaps = 84/347 (24%)
Query: 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTV 326
TP+EI LD+ +IGQ AK+ +++A+ N + R+ + +
Sbjct: 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH------------------ 46
Query: 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTV 386
E+ NIL++GPTG GKT +A+ LA+ N PF+ +AT T+ YVG++V+SI+ L
Sbjct: 47 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDS 106
Query: 387 SDYNVAAAQQ-GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGA 445
+ + A +Q GIV+IDE+DKI KK E DVS EGVQ+ LL ++EG+ V+
Sbjct: 107 AGGAIDAVEQNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST----- 159
Query: 446 RKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505
KH + T ILFI GAF
Sbjct: 160 -KHG-----MVKTDHILFIASGAF------------------------------------ 177
Query: 506 TSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565
+ SD LIPE GR P+ V L AL+ ++LTEP +L +QY+ +
Sbjct: 178 -----QVARPSD-----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA 227
Query: 566 MNGVKLHFTENALRLIAKKAI-----SKNTGARGLRSLLENILMDAM 607
GV + FT +A++ IA+ A ++N GAR L +++E LMD +
Sbjct: 228 TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMER-LMDKI 273
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 105/227 (46%), Gaps = 64/227 (28%)
Query: 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG 451
A Q GIV+IDE+DKI K+ ES DVS EGVQ+ LL ++EG V+ KH
Sbjct: 245 AVEQHGIVFIDEIDKICKRGESSG--PDVSREGVQRDLLPLVEGCTVST------KHG-- 294
Query: 452 DNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511
+ T ILFI GAF +
Sbjct: 295 ---MVKTDHILFIASGAF-----------------------------------------Q 310
Query: 512 TVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571
+ SDLI PE GR P+ V L ALT + ++LTEP ++ QY+ + GV +
Sbjct: 311 IAKPSDLI-----PELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNI 365
Query: 572 HFTENALRLIAKKAI-----SKNTGARGLRSLLENILMDAMYEIPDV 613
FT++ ++ IA+ A ++N GAR L ++LE ++ + Y+ D+
Sbjct: 366 EFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDL 412
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 28/153 (18%)
Query: 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRI-YNESSQKRSAGESSSCTTDGVDDDT 325
TP+EI LDK +IGQ+ AK+ +++A+ N + R+ NE +
Sbjct: 4 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH------------------ 45
Query: 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLT 385
E+ NIL++GPTG GKT +A+ LA+ N PF+ +AT T+ YVG++V+SI
Sbjct: 46 -EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI------ 98
Query: 386 VSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418
+ D AA + +V + ++K +AE L R
Sbjct: 99 IRDLTDAAVK--MVRVQAIEKNRYRAEELAEER 129
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 105/227 (46%), Gaps = 64/227 (28%)
Query: 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG 451
A Q GIV+IDE+DKI K+ ES DVS EGVQ+ LL ++EG V+ KH
Sbjct: 252 AVEQHGIVFIDEIDKICKRGESSG--PDVSREGVQRDLLPLVEGCTVST------KHG-- 301
Query: 452 DNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511
+ T ILFI GAF +
Sbjct: 302 ---MVKTDHILFIASGAF-----------------------------------------Q 317
Query: 512 TVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571
+ SDLI PE GR P+ V L ALT + ++LTEP ++ QY+ + GV +
Sbjct: 318 IAKPSDLI-----PELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNI 372
Query: 572 HFTENALRLIAKKAI-----SKNTGARGLRSLLENILMDAMYEIPDV 613
FT++ ++ IA+ A ++N GAR L ++LE ++ + Y+ D+
Sbjct: 373 EFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDL 419
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 28/153 (18%)
Query: 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRI-YNESSQKRSAGESSSCTTDGVDDDT 325
TP+EI LDK +IGQ+ AK+ +++A+ N + R+ NE +
Sbjct: 11 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH------------------ 52
Query: 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLT 385
E+ NIL++GPTG GKT +A+ LA+ N PF+ +AT T+ YVG++V+SI
Sbjct: 53 -EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI------ 105
Query: 386 VSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418
+ D AA + +V + ++K +AE L R
Sbjct: 106 IRDLTDAAVK--MVRVQAIEKNRYRAEELAEER 136
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 105/227 (46%), Gaps = 64/227 (28%)
Query: 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG 451
A Q GIV+IDE+DKI K+ ES DVS EGVQ+ LL ++EG V+ KH
Sbjct: 246 AVEQHGIVFIDEIDKICKRGESSG--PDVSREGVQRDLLPLVEGCTVST------KHG-- 295
Query: 452 DNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511
+ T ILFI GAF +
Sbjct: 296 ---MVKTDHILFIASGAF-----------------------------------------Q 311
Query: 512 TVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571
+ SDLI PE GR P+ V L ALT + ++LTEP ++ QY+ + GV +
Sbjct: 312 IAKPSDLI-----PELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNI 366
Query: 572 HFTENALRLIAKKAI-----SKNTGARGLRSLLENILMDAMYEIPDV 613
FT++ ++ IA+ A ++N GAR L ++LE ++ + Y+ D+
Sbjct: 367 EFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDL 413
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 28/153 (18%)
Query: 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRI-YNESSQKRSAGESSSCTTDGVDDDT 325
TP+EI LDK +IGQ+ AK+ +++A+ N + R+ NE +
Sbjct: 5 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH------------------ 46
Query: 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLT 385
E+ NIL++GPTG GKT +A+ LA+ N PF+ +AT T+ YVG++V+SI
Sbjct: 47 -EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI------ 99
Query: 386 VSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418
+ D AA + +V + ++K +AE L R
Sbjct: 100 IRDLTDAAVK--MVRVQAIEKNRYRAEELAEER 130
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 101/221 (45%), Gaps = 65/221 (29%)
Query: 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG 451
A Q GIV+IDE+DKI KK E DVS EGVQ+ LL ++EG+ V+ KH
Sbjct: 247 AVEQNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST------KHG-- 296
Query: 452 DNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511
+ T ILFI GAF +
Sbjct: 297 ---MVKTDHILFIASGAF-----------------------------------------Q 312
Query: 512 TVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571
SDLI PE GR P+ V L AL+ ++LTEP +L +QY+ + GV +
Sbjct: 313 VARPSDLI-----PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNI 367
Query: 572 HFTENALRLIAKKAI-----SKNTGARGLRSLLENILMDAM 607
FT +A++ IA+ A ++N GAR L +++E LMD +
Sbjct: 368 AFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMER-LMDKI 407
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 18/117 (15%)
Query: 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTV 326
TP+EI LD+ +IGQ AK+ +++A+ N + R+ + +
Sbjct: 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH------------------ 46
Query: 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKL 383
E+ NIL++GPTG GKT +A+ LA+ N PF+ +AT T+ YVG++V+SI+ L
Sbjct: 47 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 97/216 (44%), Gaps = 64/216 (29%)
Query: 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG 451
A Q GIV+IDE+DKI KK E DVS EGVQ+ LL ++EG+ V+ KH
Sbjct: 247 AVEQNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVST------KHG-- 296
Query: 452 DNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511
+ T ILFI GAF +
Sbjct: 297 ---XVKTDHILFIASGAF-----------------------------------------Q 312
Query: 512 TVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571
SDLI PE GR P+ V L AL+ ++LTEP +L +QY+ + GV +
Sbjct: 313 VARPSDLI-----PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALXATEGVNI 367
Query: 572 HFTENALRLIAKKAI-----SKNTGARGLRSLLENI 602
FT +A++ IA+ A ++N GAR L ++ E +
Sbjct: 368 AFTTDAVKKIAEAAFRVNEKTENIGARRLHTVXERL 403
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 18/117 (15%)
Query: 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTV 326
TP+EI LD+ +IGQ AK+ +++A+ N + R + +
Sbjct: 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRH------------------ 46
Query: 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKL 383
E+ NIL +GPTG GKT +A+ LA+ N PF+ +AT T+ YVG++V+SI+ L
Sbjct: 47 EVTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
+LL GP G+GKT+LAK +A N F A +LT ++YVGE E ++ L V+
Sbjct: 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT-SKYVGEG-EKLVRALFAVA----R 204
Query: 393 AAQQGIVYIDEVDKI 407
Q I++ID+VD +
Sbjct: 205 ELQPSIIFIDQVDSL 219
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
+LL GP G+GKTLLA+ +A + F+ A +LT ++YVG D E ++ L V+ +
Sbjct: 57 LLLFGPPGNGKTLLARAVATECSATFLNISAASLT-SKYVG-DGEKLVRALFAVARH--- 111
Query: 393 AAQQGIVYIDEVD 405
Q I++IDEVD
Sbjct: 112 -MQPSIIFIDEVD 123
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
+LL GP G+GKTLLAK +A + F+ + A+ + +Y+GE I ++
Sbjct: 218 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD-KYIGESARIIREMFAYAKEHEPC 276
Query: 393 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433
I+++DEVD I + S S D +Q+ L+++L
Sbjct: 277 -----IIFMDEVDAIGGRRFSEGTSADRE---IQRTLMELL 309
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GKTL+ K +A F A++LT +++VGE E ++ L V+
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRALFAVA----R 173
Query: 393 AAQQGIVYIDEVDKI 407
Q +++IDE+D +
Sbjct: 174 CQQPAVIFIDEIDSL 188
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYN 390
S ILL GP G+GK+ LAK +A N F ++ L ++++GE E ++ +L ++ N
Sbjct: 61 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN 118
Query: 391 VAAAQQGIVYIDEVDKIT 408
+ I++IDEVD +T
Sbjct: 119 ----KPSIIFIDEVDALT 132
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYN 390
S ILL GP G+GK+ LAK +A N F ++ L ++++GE E ++ +L ++ N
Sbjct: 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN 142
Query: 391 VAAAQQGIVYIDEVDKIT 408
+ I++ID+VD +T
Sbjct: 143 ----KPSIIFIDQVDALT 156
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYN 390
S ILL GP G+GK+ LAK +A N F ++ L ++++GE E ++ +L ++ N
Sbjct: 70 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN 127
Query: 391 VAAAQQGIVYIDEVDKIT 408
+ I++ID+VD +T
Sbjct: 128 ----KPSIIFIDQVDALT 141
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GKTLLAK +A N F+ + L + +++GE S++ + ++
Sbjct: 54 ILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK-KFIGEGA-SLVKDIFKLAKEKAP 111
Query: 393 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433
+ I++IDE+D I K D VQ+ L+++L
Sbjct: 112 S----IIFIDEIDAIAAKRTDALTGGDRE---VQRTLMQLL 145
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYN 390
S ILL GP G+GK+ LAK +A N F ++ L ++++GE E ++ +L ++ N
Sbjct: 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMAREN 109
Query: 391 VAAAQQGIVYIDEVDKIT 408
+ I++ID+VD +T
Sbjct: 110 ----KPSIIFIDQVDALT 123
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 19/106 (17%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
++L GP G+GKTLLA+ +A + + F+ L Q +Y+GE ++ +L ++ +
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ-KYIGEG-SRMVRELFVMAREHAP 242
Query: 393 AAQQGIVYIDEVDKITKKAESLNISRDVSGEG-----VQQALLKML 433
+ I+++DE+D I S V G G VQ+ +L++L
Sbjct: 243 S----IIFMDEIDSIG--------STRVEGSGGGDSEVQRTMLELL 276
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
+LL+GP G+GKTLLAK +A +VPF ++ + +VG V D
Sbjct: 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGASR-------VRDLFET 98
Query: 393 AAQQG--IVYIDEVDKITK 409
A +Q I++IDE+D I K
Sbjct: 99 AKKQAPSIIFIDEIDAIGK 117
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAA 393
LL+GP G GKTLLAK +A VPF+ + A +V +V L S + A
Sbjct: 43 LLLGPPGCGKTLLAKAVATEAQVPFL-----AMAGAEFV--EVIGGLGAARVRSLFKEAR 95
Query: 394 AQQ-GIVYIDEVDKITKK 410
A+ IVYIDE+D + KK
Sbjct: 96 ARAPCIVYIDEIDAVGKK 113
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL+GP G+GKTLLA+ +A NVPF + + +VG V D
Sbjct: 52 ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVG-------VGAARVRDLFAQ 103
Query: 393 AAQQG--IVYIDEVDKITK-KAESLNISRDVSGEGVQQALLKM 432
A IV+IDE+D + + + L D + + Q L++M
Sbjct: 104 AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GKTL+A+ +A F + + + ++ GE ES L K ++ N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGES-ESNLRKAFEEAEKNAP 298
Query: 393 AAQQGIVYIDEVDKITKKAE 412
A I++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFV-IADATTLTQARYVGE---DVESILYKLLTVSD 388
+L GP G GKTLLAK +A F+ I LT + GE +V I K
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WFGESEANVREIFDK------ 565
Query: 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG--TVVNVPEKGAR 446
A +++ DE+D I K + + V +L ++G T NV GA
Sbjct: 566 --ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Query: 447 KHP 449
P
Sbjct: 624 NRP 626
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GKTL+A+ +A F + + + ++ GE ES L K ++ N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGES-ESNLRKAFEEAEKNAP 298
Query: 393 AAQQGIVYIDEVDKITKKAE 412
A I++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFV-IADATTLTQARYVGE---DVESILYKLLTVSD 388
+L GP G GKTLLAK +A F+ I LT + GE +V I K
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WFGESEANVREIFDK------ 565
Query: 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG--TVVNVPEKGAR 446
A +++ DE+D I K + + V +L ++G T NV GA
Sbjct: 566 --ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Query: 447 KHP 449
P
Sbjct: 624 NRP 626
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNV 391
+LL+GP G GKT LA+ +A VPF+ A + + +VG + T +
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARVRDLFETAKRHAP 133
Query: 392 AAAQQGIVYIDEVDKITKK 410
IV+IDE+D + +K
Sbjct: 134 C-----IVFIDEIDAVGRK 147
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GKTL+A+ +A F + + + ++ GE ES L K ++ N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 393 AAQQGIVYIDEVDKITKKAE 412
A I++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GKTL+A+ +A F + + + ++ GE ES L K ++ N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 393 AAQQGIVYIDEVDKITKKAE 412
A I++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GKTL+A+ +A F + + + ++ GE ES L K ++ N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 393 AAQQGIVYIDEVDKITKKAE 412
A I++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAA 393
L+ GP G+GKTLLA+ A N F+ A L Q Y+GE + V D A
Sbjct: 219 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIGEGAK-------LVRDAFALA 270
Query: 394 AQQG--IVYIDEVDKI-TKKAESLNISRDVSGE-GVQQALLKML 433
++ I++IDE+D I TK+ +S + SG+ VQ+ +L++L
Sbjct: 271 KEKAPTIIFIDELDAIGTKRFDS-----EKSGDREVQRTMLELL 309
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GKTL+A+ +A F + + + ++ GE ES L K ++ N
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEI-MSKLAGES-ESNLRKAFEEAEKNAP 298
Query: 393 AAQQGIVYIDEVDKITKKAE 412
A I++IDE+D I K E
Sbjct: 299 A----IIFIDELDAIAPKRE 314
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNV 391
+LL+GP G GKT LA+ +A VPF+ A + + +VG + T +
Sbjct: 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARVRDLFETAKRHAP 109
Query: 392 AAAQQGIVYIDEVDKITKK 410
IV+IDE+D + +K
Sbjct: 110 C-----IVFIDEIDAVGRK 123
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNV 391
+LL+GP G GKT LA+ +A VPF+ A + + +VG + T +
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARVRDLFETAKRHAP 133
Query: 392 AAAQQGIVYIDEVDKITKK 410
IV+IDE+D + +K
Sbjct: 134 C-----IVFIDEIDAVGRK 147
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNV 391
+LL+GP G GKT LA+ +A VPF+ A + + +VG + T +
Sbjct: 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVGAARVRDLFETAKRHAP 124
Query: 392 AAAQQGIVYIDEVDKITKK 410
IV+IDE+D + +K
Sbjct: 125 C-----IVFIDEIDAVGRK 138
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNV 391
+L++GP G+GKTLLAK +A VPF + + +VG +
Sbjct: 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMF-----EQA 100
Query: 392 AAAQQGIVYIDEVDKITK-KAESLNISRDVSGEGVQQALLKM 432
A I++IDE+D + + + L D + + Q L++M
Sbjct: 101 KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL+GP G+G TLLA+ +A NVPF + + +VG V D
Sbjct: 52 ILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVEL-FVG-------VGAARVRDLFAQ 103
Query: 393 AAQQG--IVYIDEVDKITK-KAESLNISRDVSGEGVQQALLKM 432
A IV+IDE+D + + + L D + + Q L++M
Sbjct: 104 AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GKTL A+ +A + F+ + L Q +YVGE ++ +L ++ A
Sbjct: 246 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEGAR-MVRELFEMARTKKA 303
Query: 393 AAQQGIVYIDEVDKI 407
I++ DE+D +
Sbjct: 304 C----IIFFDEIDAV 314
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 13/103 (12%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
++L G G+GKTLLAK +A + F+ + L Q +Y+G D + ++ V+ N
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ-KYLG-DGPRLCRQIFKVAGENAP 276
Query: 393 AAQQGIVYIDEVDKI-TKKAESLNISRDVSGE-GVQQALLKML 433
+ IV+IDE+D I TK+ +S + GE +Q+ +L++L
Sbjct: 277 S----IVFIDEIDAIGTKRYDS-----NSGGEREIQRTMLELL 310
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GK+ LAK +A N + +++ ++++GE E ++ L ++ N
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES-EKLVKNLFQLAREN-- 226
Query: 393 AAQQGIVYIDEVDKI 407
+ I++IDE+D +
Sbjct: 227 --KPSIIFIDEIDSL 239
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
ILL GP G+GK+ LAK +A N + +++ ++++GE E ++ L ++ N
Sbjct: 48 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES-EKLVKNLFQLAREN-- 104
Query: 393 AAQQGIVYIDEVDKI 407
+ I++IDE+D +
Sbjct: 105 --KPSIIFIDEIDSL 117
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
+LL GP G+GKT+L K +A F+ + + +Y+GE ++ + ++ N
Sbjct: 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH-KYLGEG-PRMVRDVFRLARENAP 266
Query: 393 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435
+ I++IDEVD I K D + + LL ++G
Sbjct: 267 S----IIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 41/141 (29%)
Query: 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN 332
K LD++ IGQER K+ L R+Y E+++ R + +E +
Sbjct: 9 KTLDEY-IGQERLKQKL---------RVYLEAAKARK--------------EPLE----H 40
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
+LL GP G GKT LA +A + V + + + D+ +IL L D
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP----GDLAAILANSLEEGD---- 92
Query: 393 AAQQGIVYIDEVDKITKKAES 413
I++IDE+ +++++AE
Sbjct: 93 -----ILFIDEIHRLSRQAEE 108
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 24/158 (15%)
Query: 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNV 391
+++L GP G+GKT LA+ +ARY N A T + + + E +E + N
Sbjct: 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVT-SGVKEIREAIER--------ARQNR 102
Query: 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPR 450
A ++ I+++DEV + K Q A L +E GT+ +
Sbjct: 103 NAGRRTILFVDEVHRFNKSQ--------------QDAFLPHIEDGTITFIGATTENPSFE 148
Query: 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488
++ + + + + DIE+ +++ +D + G+G
Sbjct: 149 LNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYG 186
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 41/141 (29%)
Query: 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN 332
K LD++ IGQER K+ L R+Y E+++ R + +E +
Sbjct: 9 KTLDEY-IGQERLKQKL---------RVYLEAAKARK--------------EPLE----H 40
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
+LL GP G GKT LA +A + V + + + D+ +IL L D
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP----GDLAAILANSLEEGD---- 92
Query: 393 AAQQGIVYIDEVDKITKKAES 413
I++IDE+ +++++AE
Sbjct: 93 -----ILFIDEIHRLSRQAEE 108
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 41/141 (29%)
Query: 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN 332
K LD++ IGQER K+ L R+Y E+++ R + +E +
Sbjct: 9 KTLDEY-IGQERLKQKL---------RVYLEAAKARK--------------EPLE----H 40
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA 392
+LL GP G GKT LA +A + V + + + D+ +IL L D
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP----GDLAAILANSLEEGD---- 92
Query: 393 AAQQGIVYIDEVDKITKKAES 413
I++IDE+ +++++AE
Sbjct: 93 -----ILFIDEIHRLSRQAEE 108
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362
EK NI L+GP G+GK+ + + LA+ +N+ F +D
Sbjct: 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYN 390
+ +LL GP G GKTLLAK +A + F+ L YVGE ++ +
Sbjct: 45 AGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVGESERAVRQVFQRAKN-- 101
Query: 391 VAAAQQGIVYIDEVDKITKK 410
+ +++ DEVD + +
Sbjct: 102 ---SAPCVIFFDEVDALCPR 118
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362
I L G G+GKT L K AR +NVPF+ D
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 46/153 (30%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G +F PK LD+F IGQE KK LS+A+ MR GE
Sbjct: 15 GVQFLRPK----SLDEF-IGQENVKKKLSLALEAAKMR-----------GEVLD------ 52
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILY 381
++LL GP G GKT LA +A + + L + D+ +IL
Sbjct: 53 ----------HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ----GDMAAILT 98
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414
L + +++IDE+ ++ K E L
Sbjct: 99 SL----------ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 46/153 (30%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G +F PK LD+F IGQE KK LS+A+ MR GE
Sbjct: 15 GVQFLRPK----SLDEF-IGQENVKKKLSLALEAAKMR-----------GEVLD------ 52
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILY 381
++LL GP G GKT LA +A + + L + D+ +IL
Sbjct: 53 ----------HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ----GDMAAILT 98
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414
L + +++IDE+ ++ K E L
Sbjct: 99 SL----------ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 46/153 (30%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G +F PK LD+F IGQE KK LS+A+ MR GE
Sbjct: 15 GVQFLRPK----SLDEF-IGQENVKKKLSLALEAAKMR-----------GEVLD------ 52
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILY 381
++LL GP G GKT LA +A + + L + D+ +IL
Sbjct: 53 ----------HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ----GDMAAILT 98
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414
L + +++IDE+ ++ K E L
Sbjct: 99 SL----------ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 46/153 (30%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G +F PK LD+F IGQE KK LS+A+ MR GE
Sbjct: 15 GVQFLRPK----SLDEF-IGQENVKKKLSLALEAAKMR-----------GEVLD------ 52
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILY 381
++LL GP G GKT LA +A + + L + D+ +IL
Sbjct: 53 ----------HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ----GDMAAILT 98
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414
L + +++IDE+ ++ K E L
Sbjct: 99 SL----------ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 46/153 (30%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G +F PK LD+F IGQE KK LS+A+ MR GE
Sbjct: 15 GVQFLRPK----SLDEF-IGQENVKKKLSLALEAAKMR-----------GEVLD------ 52
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILY 381
++LL GP G GKT LA +A + + L + D+ +IL
Sbjct: 53 ----------HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ----GDMAAILT 98
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414
L + +++IDE+ ++ K E L
Sbjct: 99 SL----------ERGDVLFIDEIHRLNKAVEEL 121
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFV-IADATTLTQARYVGE---DVESILYKLLTVSD 388
+L GP G GKTLLAK +A F+ I LT + GE +V I K
Sbjct: 52 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WFGESEANVREIFDK------ 103
Query: 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG--TVVNVPEKGAR 446
A +++ DE+D I K + + V +L ++G T NV GA
Sbjct: 104 --ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161
Query: 447 KHP 449
P
Sbjct: 162 NRP 164
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 46/153 (30%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G +F PK LD+F IGQE KK LS+A+ MR GE
Sbjct: 15 GVQFLRPK----SLDEF-IGQENVKKKLSLALEAAKMR-----------GEVLD------ 52
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILY 381
++LL GP G G+T LA +A + + L + D+ +IL
Sbjct: 53 ----------HVLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ----GDMAAILT 98
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414
L + +++IDE+ ++ K E L
Sbjct: 99 SL----------ERGDVLFIDEIHRLNKAVEEL 121
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT--------LTQARYVGEDVES 378
K+N LL+G +G GKT +A+ LA + +VP V+AD T L +Y G D E
Sbjct: 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEK 265
Query: 379 ILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407
LL + + I++IDE+ I
Sbjct: 266 RFKALLKQLEQDT----NSILFIDEIHTI 290
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVG------EDVESILYKLLTV 386
I LMGPT SGKT LA L + + V + D+ + + +G E++ + ++LL +
Sbjct: 13 IFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDI 72
Query: 387 SD 388
D
Sbjct: 73 RD 74
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 320 GVDDDTVEL---EKSNILLMGPTGSGKTLLAKTLARYVN-------------VPFVIADA 363
G+ D +EL + IL+ GPTGSGK+ ++ Y+N + +V
Sbjct: 123 GLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK 182
Query: 364 TTLTQARYVGEDVES 378
++ R VGED +S
Sbjct: 183 KSIVNQREVGEDTKS 197
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 328 LEKSNILLMGPTGSGKTLLAKT-----LARYVNVPFVIADATTLTQARYVG-EDVESILY 381
LE + +LL PTGSGKTL+A+ L + + LT +Y+ +D E I +
Sbjct: 44 LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGF 103
Query: 382 KL-LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML-EGTVVN 439
K+ +T DY+ A ++ D I E L+ E + + +L E +N
Sbjct: 104 KVAMTSGDYDTDDA-----WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158
Query: 440 VPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499
PE+G P +++ I K + A TIS +Q + PV N R
Sbjct: 159 DPERG----PVVESVTIRAKRRNLLALSA------TISNYKQIAKWLGAEPVATNWRPVP 208
Query: 500 VTDAVV 505
+ + V+
Sbjct: 209 LIEGVI 214
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 297 YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351
+ R+ + R+ ++ G+ D + + L +GPTG GKT LAKTLA
Sbjct: 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPI--GSFLFLGPTGVGKTELAKTLA 68
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 297 YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351
+ R+ + R+ ++ G+ D + + L +GPTG GKT LAKTLA
Sbjct: 13 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPI--GSFLFLGPTGVGKTELAKTLA 65
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Query: 320 GVDDDTVEL---EKSNILLMGPTGSGKTLLAKTLARYVN-------------VPFVIADA 363
G+ D +EL + IL+ GPTGSGK+ + Y+N + +V
Sbjct: 123 GLPDKVLELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDPIEYVFKHK 182
Query: 364 TTLTQARYVGEDVESI 379
++ R VGED +S
Sbjct: 183 KSIVNQREVGEDTKSF 198
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVG------EDVESILYKLLTV 386
I L GPT SGKT LA L + + V + D+ + + +G E++ + ++LL +
Sbjct: 13 IFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRLLDI 72
Query: 387 SD 388
D
Sbjct: 73 RD 74
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Query: 320 GVDDDTVEL---EKSNILLMGPTGSGKTLLAKTLARYVN-------------VPFVIADA 363
G+ D +EL + IL+ GPTGSGK+ + Y+N + +V
Sbjct: 112 GLPDKVLELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDPIEYVFKHK 171
Query: 364 TTLTQARYVGEDVESI 379
++ R VGED +S
Sbjct: 172 KSIVNQREVGEDTKSF 187
>pdb|2EYU|A Chain A, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
pdb|2EYU|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
Length = 261
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 320 GVDDDTVEL---EKSNILLMGPTGSGKTLLAKTLARYVN-------------VPFVIADA 363
G+ D +EL + IL+ GPTGSGK+ + Y+N + +V
Sbjct: 12 GLPDKVLELCHRKXGLILVTGPTGSGKSTTIASXIDYINQTKSYHIITIEDPIEYVFKHK 71
Query: 364 TTLTQARYVGEDVES 378
++ R VGED +S
Sbjct: 72 KSIVNQREVGEDTKS 86
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 297 YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351
+ R+ + R+ ++ G+ D + + L +GPTG GKT LAKTLA
Sbjct: 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPI--GSFLFLGPTGVGKTELAKTLA 609
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 327 ELEKSNIL-LMGPTGSGKTLLAKTLARYVNVPF---VIADATTLTQARYVGEDVESILYK 382
E++K ++ ++GP G GKT K LA V P + D T + +Y+ D E +Y+
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAG-VEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 383 LLTVSD 388
LL+ D
Sbjct: 367 LLSKID 372
>pdb|2EBF|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 372 VGEDVESILYKLLTVSDYNVAAAQQGIVY-----IDEVDKITKKAESLNISRDVSGEGVQ 426
+GE + IL KL + + N+ +QG+++ ID ++ +E LN R++ + ++
Sbjct: 68 IGESYKRILAKLQRIHNSNILDERQGLMHELMELIDLYEESQPSSERLNAFRELRTQ-LE 126
Query: 427 QAL----LKMLEGTVVNVPEKGA 445
+AL ++ L+ ++ +P KG+
Sbjct: 127 KALYLPEMEALKKQILQIPNKGS 149
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359
++LL GP SGKT LA +A N PF+
Sbjct: 65 SVLLEGPPHSGKTALAAKIAEESNFPFI 92
>pdb|2EBH|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 372 VGEDVESILYKLLTVSDYNVAAAQQGIVY-----IDEVDKITKKAESLNISRDVSGEGVQ 426
+GE + IL KL + + N+ +QG+++ ID ++ +E LN R++ + ++
Sbjct: 68 IGESYKRILAKLQRIHNSNILDERQGLMHELMELIDLYEESQPSSERLNAFRELRTQ-LE 126
Query: 427 QAL----LKMLEGTVVNVPEKGA 445
+AL ++ L+ ++ +P KG+
Sbjct: 127 KALYLPEMEALKKQILQIPNKGS 149
>pdb|2EC5|A Chain A, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
pdb|2EC5|B Chain B, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 372 VGEDVESILYKLLTVSDYNVAAAQQGIVY-----IDEVDKITKKAESLNISRDVSGEGVQ 426
+GE + IL KL + + N+ +QG+++ ID ++ +E LN R++ + ++
Sbjct: 68 IGESYKRILAKLQRIHNSNILDERQGLMHELMELIDLYEESQPSSERLNAFRELRTQ-LE 126
Query: 427 QAL----LKMLEGTVVNVPEKGA 445
+AL ++ L+ ++ +P KG+
Sbjct: 127 KALYLPEMEALKKQILQIPNKGS 149
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359
++LL GP SGKT LA +A N PF+
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPFI 93
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT------TLTQARYVGEDVESILYKL 383
K+ +L+ G +G+GK ++A+ + RY D L ++ G + +
Sbjct: 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHE-KGAFTGA 210
Query: 384 LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434
LT + A QG +++DEV ++ ++ VQ LL++LE
Sbjct: 211 LTRKKGKLELADQGTLFLDEVGELDQR--------------VQAKLLRVLE 247
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 325 TVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVPF---VIADATTLTQAR----YVGEDV 376
T+ +EK N++ GP G GKT L KT++ Y+ P +I + +T+ + ++ E++
Sbjct: 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITKVKGKIFFLPEEI 87
Query: 377 ESILYKLLTVSDYNVAAA 394
I+ + ++V DY A A
Sbjct: 88 --IVPRKISVEDYLKAVA 103
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVG 373
I+++GPT SGKT L+ +A+ N + D+ + Q +G
Sbjct: 10 IVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIG 50
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 327 ELEKSNIL-LMGPTGSGKTLLAKTLARYVNVPF---VIADATTLTQARYVGEDVESILYK 382
E+ K ++ ++GP G GKT K LA V P V D T + +Y+ + E +Y+
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436
Query: 383 LLTVSD 388
LL+ D
Sbjct: 437 LLSKID 442
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 330 KSNILLMGPTGSGKTLLAKTLARYVNVP-FVIADATTLTQARY 371
K + L+G TG+GKT L + VN P VIA TL Y
Sbjct: 38 KKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLY 80
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 330 KSNILLMGPTGSGKTLLAKTLARYVNVP-FVIADATTLTQARY 371
K + L+G TG+GKT L + VN P VIA TL Y
Sbjct: 32 KKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLY 74
>pdb|2DPW|A Chain A, Hpothetical Transferase Structure From Thermus
Thermophilus
Length = 232
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%)
Query: 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA 577
L A GL P +VG P LV ALT +L + AL ++ G H TE A
Sbjct: 42 LYAAGLSPVYVGENPGLVPAPALTLPDRGGLLENLEQALEHVEGRVLVATGDIPHLTEEA 101
Query: 578 LRLIAKKA 585
+R + KA
Sbjct: 102 VRFVLDKA 109
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 327 ELEKSNIL-LMGPTGSGKTLLAKTLARYVNVPF---VIADATTLTQARYVGEDVESILYK 382
E+ K ++ ++GP G GKT K LA V P V D T + +Y+ + E +Y+
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 422
Query: 383 LLTVSD 388
LL+ D
Sbjct: 423 LLSKID 428
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLTQARY 371
ILL+G GSGKT A LARY+ P +IA A T A Y
Sbjct: 102 ILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA-ADTYRPAAY 143
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLTQARY 371
ILL+G GSGKT A LARY+ P +IA A T A Y
Sbjct: 102 ILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA-ADTYRPAAY 143
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 347 AKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406
A+ + R+++ PF +A+ T + +YVG E+I L +S + +Q + +D+
Sbjct: 424 ARKIERFLSQPFFVAEVFTGSPGKYVGL-AETIRGFQLILSGELDSLPEQAFYLVGNIDE 482
Query: 407 ITKKAESLNI 416
T KA +L +
Sbjct: 483 ATAKAMNLEM 492
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDV 376
I LMGPT +GKT LA LA + + D+ + Y G D+
Sbjct: 8 IFLMGPTAAGKTDLAMALADALPCELISVDSALI----YRGMDI 47
>pdb|2VLC|A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii)
pdb|2VLC|B Chain B, Crystal Structure Of Natural Cinnamomin (Isoform Iii)
Length = 570
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 449 PRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487
P +N+ DTK F G++ D+E+ ERR++ +G
Sbjct: 117 PAIENLLPDTKRYTFPFSGSYTDLERVAGERREEILLGM 155
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 384 LTVSDYNVAAAQQGIVYIDEVDKITKK--AESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
+T DY V ++ G+V + EVD + K A I+ D++ +Q +LK + +
Sbjct: 356 ITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVDLA----EQKILKNYQ-----IK 406
Query: 442 EKGARKHPRGDNIQIDTKDI 461
++ A+K+P G+ I+I + +
Sbjct: 407 QQAAQKYPYGEWIKIQRQTV 426
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362
NI+ +G GSGK+ LA+ LA+ +++ F+ +D
Sbjct: 6 NIVFIGFXGSGKSTLARALAKDLDLVFLDSD 36
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 333 ILLMGPTGSGKTLLAKTLARYVNV 356
+ L+GPTGSGKT + L R+ +V
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDV 407
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT---QARYVGEDVESILYKL 383
K+N +L+G G GKT +A+ LA+ + VP ++ D +T +Y GE E L K+
Sbjct: 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGE-FEDRLKKV 259
Query: 384 LTVSDYNVAAAQQGIVYID 402
+ + A I++ID
Sbjct: 260 MD----EIRQAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT---QARYVGEDVESILYKL 383
K+N +L+G G GKT +A+ LA+ + VP ++ D +T +Y GE E L K+
Sbjct: 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGE-FEDRLKKV 259
Query: 384 LTVSDYNVAAAQQGIVYID 402
+ + A I++ID
Sbjct: 260 MD----EIRQAGNIILFID 274
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 332 NILLMGPTGSGKTLLAKTLA-----RYVNV 356
NILL G G GKT L K LA +Y+NV
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 332 NILLMGPTGSGKTLLAKTLA-----RYVNV 356
NILL G G GKT L K LA +Y+NV
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 335 LMGPTGSGKTLLAKTLARYVNVPFV------IADATTLTQAR--YVGEDVESILYKLLTV 386
L GP G GKT LAK++A+ + FV + D + + R YVG I+ +
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA 172
Query: 387 SDYNVAAAQQGIVYIDEVDKIT 408
N + +DE+DK++
Sbjct: 173 GKLNP------VFLLDEIDKMS 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,566,658
Number of Sequences: 62578
Number of extensions: 663358
Number of successful extensions: 1928
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1808
Number of HSP's gapped (non-prelim): 122
length of query: 684
length of database: 14,973,337
effective HSP length: 105
effective length of query: 579
effective length of database: 8,402,647
effective search space: 4865132613
effective search space used: 4865132613
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)