Query 005670
Match_columns 684
No_of_seqs 432 out of 3607
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 11:58:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 2.7E-67 5.9E-72 558.7 35.1 445 207-660 78-558 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 6.1E-64 1.3E-68 517.5 26.9 345 263-634 47-391 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 2.1E-49 4.6E-54 435.5 31.1 343 265-633 59-401 (412)
4 TIGR00382 clpX endopeptidase C 100.0 1.2E-48 2.6E-53 428.1 31.0 344 264-633 64-407 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 3.8E-41 8.3E-46 365.5 23.6 285 266-632 1-425 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 8.6E-41 1.9E-45 363.0 24.3 286 265-632 3-427 (443)
7 COG0542 clpA ATP-binding subun 100.0 1.5E-37 3.2E-42 357.5 21.4 280 254-613 464-761 (786)
8 COG1220 HslU ATP-dependent pro 100.0 1.1E-35 2.4E-40 309.9 21.8 286 265-632 3-428 (444)
9 PRK11034 clpA ATP-dependent Cl 100.0 5.8E-32 1.3E-36 316.2 22.8 275 254-611 431-720 (758)
10 CHL00095 clpC Clp protease ATP 100.0 1.6E-30 3.4E-35 309.0 26.2 288 254-612 482-787 (821)
11 TIGR02639 ClpA ATP-dependent C 100.0 1.8E-30 3.8E-35 305.2 23.3 274 255-611 428-716 (731)
12 TIGR03345 VI_ClpV1 type VI sec 100.0 2.3E-29 5E-34 298.9 23.6 279 254-611 539-835 (852)
13 TIGR03346 chaperone_ClpB ATP-d 100.0 6.5E-28 1.4E-32 287.6 25.6 275 254-611 538-830 (852)
14 PRK10865 protein disaggregatio 100.0 6E-28 1.3E-32 287.4 23.8 275 254-611 541-833 (857)
15 KOG1051 Chaperone HSP104 and r 99.9 4.8E-26 1E-30 265.6 21.5 288 252-612 533-839 (898)
16 COG3829 RocR Transcriptional r 99.9 3.8E-26 8.2E-31 252.3 18.1 275 278-671 246-536 (560)
17 COG3604 FhlA Transcriptional r 99.9 2.3E-25 5.1E-30 243.2 16.7 280 278-672 224-523 (550)
18 COG2204 AtoC Response regulato 99.9 1.9E-24 4.1E-29 238.7 14.2 285 276-672 140-434 (464)
19 COG0466 Lon ATP-dependent Lon 99.9 3.4E-23 7.4E-28 233.8 20.1 254 255-613 303-564 (782)
20 TIGR02880 cbbX_cfxQ probable R 99.9 6.6E-23 1.4E-27 216.3 19.2 238 265-613 10-260 (284)
21 KOG2004 Mitochondrial ATP-depe 99.9 5.9E-23 1.3E-27 230.6 19.5 256 254-614 390-653 (906)
22 KOG0730 AAA+-type ATPase [Post 99.9 3.3E-23 7.1E-28 232.1 17.1 221 277-611 434-657 (693)
23 COG1222 RPT1 ATP-dependent 26S 99.9 5.5E-23 1.2E-27 217.3 17.8 220 278-608 152-374 (406)
24 COG1223 Predicted ATPase (AAA+ 99.9 2.6E-23 5.6E-28 211.4 13.8 216 277-609 121-338 (368)
25 CHL00181 cbbX CbbX; Provisiona 99.9 1.9E-22 4E-27 213.2 20.1 238 265-613 11-261 (287)
26 TIGR00763 lon ATP-dependent pr 99.9 4.5E-22 9.8E-27 235.6 22.2 242 265-612 308-560 (775)
27 TIGR02881 spore_V_K stage V sp 99.9 6.9E-22 1.5E-26 205.7 21.0 230 272-613 2-245 (261)
28 PRK10787 DNA-binding ATP-depen 99.9 1E-21 2.2E-26 231.7 23.6 266 254-629 301-574 (784)
29 KOG0736 Peroxisome assembly fa 99.9 2.7E-22 5.8E-27 226.7 15.8 249 277-633 672-928 (953)
30 KOG0734 AAA+-type ATPase conta 99.9 5.5E-22 1.2E-26 216.9 15.5 231 266-611 293-526 (752)
31 PF07724 AAA_2: AAA domain (Cd 99.9 1.9E-22 4.1E-27 198.0 9.3 166 329-534 2-171 (171)
32 KOG0738 AAA+-type ATPase [Post 99.9 1.4E-21 3.1E-26 207.8 15.5 220 278-610 213-436 (491)
33 KOG0733 Nuclear AAA ATPase (VC 99.9 3.3E-21 7.2E-26 213.6 17.8 224 278-609 512-736 (802)
34 KOG0731 AAA+-type ATPase conta 99.9 8.2E-21 1.8E-25 218.3 20.3 221 278-608 312-535 (774)
35 PF05496 RuvB_N: Holliday junc 99.9 2.6E-20 5.5E-25 188.5 19.3 198 279-601 26-224 (233)
36 TIGR02974 phageshock_pspF psp 99.8 3E-20 6.6E-25 200.0 14.2 284 279-672 1-309 (329)
37 PRK05022 anaerobic nitric oxid 99.8 7E-20 1.5E-24 207.8 17.7 280 278-672 188-485 (509)
38 KOG0739 AAA+-type ATPase [Post 99.8 4.9E-20 1.1E-24 190.5 11.7 127 278-435 134-262 (439)
39 PRK11608 pspF phage shock prot 99.8 3.3E-19 7.2E-24 191.7 17.6 284 278-672 7-303 (326)
40 TIGR02329 propionate_PrpR prop 99.8 3.5E-19 7.6E-24 202.1 16.9 274 279-672 214-507 (526)
41 KOG0733 Nuclear AAA ATPase (VC 99.8 4.5E-19 9.8E-24 196.8 17.0 221 278-610 191-415 (802)
42 KOG0728 26S proteasome regulat 99.8 2.7E-19 5.8E-24 181.4 13.0 216 278-606 148-368 (404)
43 PRK11388 DNA-binding transcrip 99.8 1.3E-18 2.8E-23 202.4 20.1 267 278-671 326-607 (638)
44 CHL00195 ycf46 Ycf46; Provisio 99.8 1.3E-18 2.8E-23 195.7 18.8 217 278-609 229-447 (489)
45 PRK10820 DNA-binding transcrip 99.8 8.7E-19 1.9E-23 199.3 17.4 270 278-668 205-487 (520)
46 TIGR01241 FtsH_fam ATP-depende 99.8 1.9E-18 4.1E-23 195.5 19.1 217 278-607 56-276 (495)
47 TIGR01817 nifA Nif-specific re 99.8 5.2E-19 1.1E-23 201.8 14.2 221 278-605 197-427 (534)
48 PRK15424 propionate catabolism 99.8 6.9E-19 1.5E-23 199.8 14.9 218 279-605 221-464 (538)
49 COG0464 SpoVK ATPases of the A 99.8 2E-18 4.3E-23 195.1 18.5 220 279-610 244-466 (494)
50 COG0465 HflB ATP-dependent Zn 99.8 1.1E-18 2.3E-23 197.9 15.6 217 278-606 151-370 (596)
51 TIGR01243 CDC48 AAA family ATP 99.8 2.3E-18 4.9E-23 203.3 18.5 220 277-611 453-677 (733)
52 PTZ00454 26S protease regulato 99.8 4.2E-18 9.1E-23 187.6 18.5 222 278-609 146-369 (398)
53 PRK03992 proteasome-activating 99.8 6.5E-18 1.4E-22 185.8 18.8 222 278-609 132-355 (389)
54 COG2255 RuvB Holliday junction 99.8 7E-18 1.5E-22 174.3 17.4 190 274-585 24-213 (332)
55 KOG0735 AAA+-type ATPase [Post 99.8 3.4E-18 7.3E-23 192.3 16.1 222 279-613 669-892 (952)
56 COG1221 PspF Transcriptional r 99.8 2.9E-18 6.3E-23 187.0 14.8 226 274-610 75-313 (403)
57 COG2256 MGS1 ATPase related to 99.8 4.1E-18 9E-23 183.0 15.3 170 331-604 49-218 (436)
58 TIGR03689 pup_AAA proteasome A 99.8 2.3E-17 4.9E-22 185.9 21.0 218 278-608 183-412 (512)
59 CHL00176 ftsH cell division pr 99.8 1.1E-17 2.5E-22 193.4 18.5 219 278-607 184-404 (638)
60 TIGR02915 PEP_resp_reg putativ 99.8 8.2E-18 1.8E-22 187.0 15.3 249 331-672 163-422 (445)
61 PRK10923 glnG nitrogen regulat 99.7 1.2E-17 2.5E-22 187.1 15.0 198 331-606 162-371 (469)
62 KOG0727 26S proteasome regulat 99.7 1.3E-17 2.9E-22 169.3 13.7 175 278-551 156-337 (408)
63 PLN00020 ribulose bisphosphate 99.7 4.1E-17 8.8E-22 175.3 18.0 176 330-584 148-327 (413)
64 PTZ00361 26 proteosome regulat 99.7 4.3E-17 9.4E-22 181.1 16.9 219 278-609 184-407 (438)
65 PRK15429 formate hydrogenlyase 99.7 2.8E-17 6E-22 192.9 16.0 271 278-672 377-658 (686)
66 PRK11361 acetoacetate metaboli 99.7 3.5E-17 7.7E-22 182.2 14.8 251 331-672 167-434 (457)
67 PRK15115 response regulator Gl 99.7 3.8E-17 8.3E-22 181.6 15.0 246 331-672 158-415 (444)
68 KOG0729 26S proteasome regulat 99.7 3.1E-17 6.8E-22 167.6 12.3 214 278-602 178-394 (435)
69 COG3283 TyrR Transcriptional r 99.7 1.4E-16 3E-21 168.4 16.7 239 331-662 228-476 (511)
70 TIGR01242 26Sp45 26S proteasom 99.7 2.1E-16 4.5E-21 172.3 18.1 218 278-609 123-346 (364)
71 TIGR01818 ntrC nitrogen regula 99.7 1.1E-16 2.5E-21 178.5 14.9 198 331-606 158-367 (463)
72 KOG0737 AAA+-type ATPase [Post 99.7 1.7E-16 3.7E-21 169.1 14.2 226 279-614 94-319 (386)
73 TIGR02902 spore_lonB ATP-depen 99.7 3.6E-16 7.8E-21 178.3 17.1 215 279-608 67-314 (531)
74 KOG0726 26S proteasome regulat 99.7 6.3E-17 1.4E-21 167.2 9.6 182 278-555 186-371 (440)
75 CHL00206 ycf2 Ycf2; Provisiona 99.7 5.7E-16 1.2E-20 189.5 17.2 190 328-610 1628-1861(2281)
76 KOG0741 AAA+-type ATPase [Post 99.7 8.3E-17 1.8E-21 176.5 8.9 201 331-613 257-462 (744)
77 KOG0652 26S proteasome regulat 99.7 2.1E-16 4.6E-21 161.2 11.0 181 278-552 172-354 (424)
78 PRK14956 DNA polymerase III su 99.7 1.4E-15 3E-20 169.7 18.3 185 279-604 20-228 (484)
79 COG3284 AcoR Transcriptional a 99.7 1.8E-16 3.9E-21 178.5 10.6 195 330-604 336-538 (606)
80 PRK00080 ruvB Holliday junctio 99.7 5.5E-15 1.2E-19 158.9 20.7 204 279-607 27-231 (328)
81 TIGR00635 ruvB Holliday juncti 99.6 6.1E-15 1.3E-19 156.1 19.3 202 279-604 6-207 (305)
82 PRK10733 hflB ATP-dependent me 99.6 3.1E-15 6.7E-20 174.3 18.2 227 270-608 146-374 (644)
83 PRK07003 DNA polymerase III su 99.6 3E-15 6.4E-20 173.0 17.4 186 278-604 17-226 (830)
84 PRK13342 recombination factor 99.6 4E-15 8.6E-20 165.0 17.8 166 331-604 37-202 (413)
85 PRK14962 DNA polymerase III su 99.6 4.4E-15 9.6E-20 166.9 17.6 186 278-604 15-224 (472)
86 PRK10365 transcriptional regul 99.6 7.3E-15 1.6E-19 162.8 18.6 249 331-671 163-421 (441)
87 PRK12323 DNA polymerase III su 99.6 5.7E-15 1.2E-19 168.8 17.5 186 278-604 17-231 (700)
88 PF00158 Sigma54_activat: Sigm 99.6 2.2E-15 4.7E-20 147.7 12.0 149 279-491 1-164 (168)
89 PRK14960 DNA polymerase III su 99.6 1E-14 2.2E-19 167.1 18.7 186 278-604 16-225 (702)
90 PLN03025 replication factor C 99.6 4.9E-15 1.1E-19 158.7 15.4 181 279-601 15-203 (319)
91 KOG0651 26S proteasome regulat 99.6 1.6E-15 3.5E-20 158.2 11.0 212 279-600 134-347 (388)
92 PRK14958 DNA polymerase III su 99.6 8.7E-15 1.9E-19 166.1 18.0 186 278-604 17-226 (509)
93 PRK13341 recombination factor 99.6 9.5E-15 2E-19 171.3 17.4 170 331-604 53-223 (725)
94 PF01078 Mg_chelatase: Magnesi 99.6 2E-15 4.2E-20 151.8 9.6 184 278-544 4-206 (206)
95 KOG0989 Replication factor C, 99.6 6.7E-15 1.5E-19 153.7 13.8 188 279-601 38-233 (346)
96 PRK14949 DNA polymerase III su 99.6 1.8E-14 4E-19 169.1 19.1 190 278-603 17-225 (944)
97 PRK14961 DNA polymerase III su 99.6 5.5E-14 1.2E-18 153.5 19.6 186 278-604 17-226 (363)
98 PRK07994 DNA polymerase III su 99.6 2.9E-14 6.4E-19 164.6 18.2 185 278-603 17-225 (647)
99 PRK14964 DNA polymerase III su 99.6 4E-14 8.8E-19 159.2 18.8 185 279-604 15-223 (491)
100 TIGR01243 CDC48 AAA family ATP 99.6 2.2E-14 4.8E-19 169.7 17.1 218 279-609 180-399 (733)
101 KOG2028 ATPase related to the 99.6 1E-14 2.2E-19 154.7 12.2 199 331-634 163-365 (554)
102 TIGR02639 ClpA ATP-dependent C 99.6 1.8E-14 3.9E-19 170.2 15.4 188 278-585 183-381 (731)
103 PRK06645 DNA polymerase III su 99.6 8.5E-14 1.8E-18 157.5 19.3 186 278-604 22-235 (507)
104 PRK07764 DNA polymerase III su 99.6 5.7E-14 1.2E-18 166.7 18.6 186 278-604 16-227 (824)
105 PRK14952 DNA polymerase III su 99.6 8.7E-14 1.9E-18 159.7 19.5 186 278-604 14-225 (584)
106 PF00004 AAA: ATPase family as 99.6 9E-15 2E-19 134.1 9.3 110 333-468 1-110 (132)
107 KOG0740 AAA+-type ATPase [Post 99.6 2.3E-14 5E-19 157.2 13.9 223 277-610 153-375 (428)
108 PRK14957 DNA polymerase III su 99.6 8.7E-14 1.9E-18 158.4 18.8 186 278-604 17-226 (546)
109 PRK14951 DNA polymerase III su 99.5 1E-13 2.2E-18 159.8 18.1 185 279-604 18-231 (618)
110 PRK14959 DNA polymerase III su 99.5 1.3E-13 2.9E-18 158.2 18.7 185 278-603 17-225 (624)
111 PRK08691 DNA polymerase III su 99.5 8.6E-14 1.9E-18 160.6 17.2 186 278-604 17-226 (709)
112 PRK14963 DNA polymerase III su 99.5 2.1E-13 4.5E-18 154.6 18.4 186 278-604 15-223 (504)
113 PRK14965 DNA polymerase III su 99.5 1.9E-13 4.2E-18 157.4 18.3 186 278-604 17-226 (576)
114 PRK14969 DNA polymerase III su 99.5 1.8E-13 4E-18 156.0 17.1 186 278-604 17-226 (527)
115 KOG0732 AAA+-type ATPase conta 99.5 1.4E-13 3.1E-18 162.8 16.2 221 278-610 266-493 (1080)
116 TIGR02903 spore_lon_C ATP-depe 99.5 3.7E-13 7.9E-18 156.2 19.3 213 279-606 156-402 (615)
117 PRK05563 DNA polymerase III su 99.5 3.1E-13 6.8E-18 155.1 18.2 186 278-604 17-226 (559)
118 PRK14955 DNA polymerase III su 99.5 4E-13 8.6E-18 148.4 17.9 191 278-604 17-234 (397)
119 PRK12402 replication factor C 99.5 4.6E-13 9.9E-18 143.0 17.5 191 279-603 17-231 (337)
120 TIGR00368 Mg chelatase-related 99.5 2E-13 4.4E-18 154.4 15.5 241 278-613 193-484 (499)
121 TIGR03345 VI_ClpV1 type VI sec 99.5 1.7E-13 3.7E-18 163.9 15.7 188 278-585 188-386 (852)
122 TIGR03420 DnaA_homol_Hda DnaA 99.5 4.7E-13 1E-17 135.2 16.2 164 331-604 39-207 (226)
123 CHL00081 chlI Mg-protoporyphyr 99.5 3.3E-13 7.1E-18 146.2 15.7 228 279-610 19-306 (350)
124 TIGR02640 gas_vesic_GvpN gas v 99.5 8.4E-13 1.8E-17 138.0 18.2 156 331-551 22-196 (262)
125 PRK06647 DNA polymerase III su 99.5 7.8E-13 1.7E-17 151.7 19.3 186 278-604 17-226 (563)
126 COG2812 DnaX DNA polymerase II 99.5 1.5E-13 3.2E-18 154.7 12.8 192 278-605 17-227 (515)
127 PRK13407 bchI magnesium chelat 99.5 3.7E-13 8E-18 145.3 15.4 229 278-609 9-289 (334)
128 TIGR02030 BchI-ChlI magnesium 99.5 4.2E-13 9.1E-18 145.1 15.2 230 278-610 5-293 (337)
129 PRK07133 DNA polymerase III su 99.5 1.1E-12 2.3E-17 152.8 19.5 190 278-603 19-224 (725)
130 PRK08451 DNA polymerase III su 99.5 1E-12 2.2E-17 149.2 18.9 185 279-604 16-224 (535)
131 PRK07940 DNA polymerase III su 99.5 4.1E-13 8.9E-18 148.0 15.2 118 278-434 6-142 (394)
132 TIGR02397 dnaX_nterm DNA polym 99.5 1.6E-12 3.5E-17 140.1 19.5 186 278-604 15-224 (355)
133 PRK05896 DNA polymerase III su 99.5 1.1E-12 2.3E-17 150.2 18.8 186 278-604 17-226 (605)
134 KOG0744 AAA+-type ATPase [Post 99.5 7.1E-14 1.5E-18 146.6 8.4 157 330-558 177-345 (423)
135 TIGR02442 Cob-chelat-sub cobal 99.5 7.5E-13 1.6E-17 154.2 17.8 226 278-607 5-285 (633)
136 PRK06305 DNA polymerase III su 99.5 1.5E-12 3.2E-17 146.1 18.8 186 278-604 18-228 (451)
137 PRK09111 DNA polymerase III su 99.5 1.4E-12 3.1E-17 150.3 19.0 191 278-604 25-239 (598)
138 PRK14954 DNA polymerase III su 99.5 1.6E-12 3.5E-17 150.3 19.3 191 278-604 17-234 (620)
139 PHA02544 44 clamp loader, smal 99.5 2.1E-12 4.6E-17 137.4 18.7 191 279-602 23-213 (316)
140 PRK14970 DNA polymerase III su 99.5 1.2E-12 2.6E-17 142.7 16.4 190 279-604 19-215 (367)
141 PRK04195 replication factor C 99.5 2.4E-12 5.1E-17 145.7 19.3 187 279-601 16-205 (482)
142 PRK14948 DNA polymerase III su 99.4 2.6E-12 5.6E-17 149.0 19.7 189 278-602 17-226 (620)
143 KOG0730 AAA+-type ATPase [Post 99.4 8.6E-13 1.9E-17 149.1 15.2 218 277-608 184-403 (693)
144 PRK14953 DNA polymerase III su 99.4 2.7E-12 5.9E-17 145.1 19.3 191 278-604 17-226 (486)
145 PRK11034 clpA ATP-dependent Cl 99.4 9.8E-13 2.1E-17 155.2 16.3 187 278-584 187-384 (758)
146 smart00350 MCM minichromosome 99.4 1.9E-12 4.1E-17 147.4 17.5 255 271-610 197-488 (509)
147 PRK08903 DnaA regulatory inact 99.4 2.4E-12 5.1E-17 131.0 16.3 160 331-606 43-207 (227)
148 CHL00095 clpC Clp protease ATP 99.4 1.3E-12 2.8E-17 156.3 16.4 187 278-585 180-377 (821)
149 COG0714 MoxR-like ATPases [Gen 99.4 1.1E-12 2.5E-17 141.1 14.1 144 267-468 14-162 (329)
150 PRK13531 regulatory ATPase Rav 99.4 4.4E-12 9.5E-17 141.7 18.6 233 269-610 12-268 (498)
151 PRK14950 DNA polymerase III su 99.4 5E-12 1.1E-16 146.2 19.1 191 278-604 17-227 (585)
152 PRK10865 protein disaggregatio 99.4 1.6E-12 3.5E-17 155.8 15.5 187 274-581 176-373 (857)
153 COG0606 Predicted ATPase with 99.4 8.7E-13 1.9E-17 145.3 11.4 185 278-545 180-384 (490)
154 PRK14971 DNA polymerase III su 99.4 4.7E-12 1E-16 146.8 18.0 186 278-604 18-228 (614)
155 PRK00440 rfc replication facto 99.4 7.3E-12 1.6E-16 132.6 17.4 185 279-604 19-209 (319)
156 TIGR01650 PD_CobS cobaltochela 99.4 3E-12 6.5E-17 137.2 14.2 159 331-551 65-231 (327)
157 COG1224 TIP49 DNA helicase TIP 99.4 1E-11 2.2E-16 132.1 16.7 62 279-367 41-104 (450)
158 PRK08084 DNA replication initi 99.4 2.2E-11 4.8E-16 125.4 17.5 67 524-606 149-217 (235)
159 TIGR03346 chaperone_ClpB ATP-d 99.4 6.1E-12 1.3E-16 151.2 15.1 187 279-585 175-372 (852)
160 KOG0991 Replication factor C, 99.3 4.3E-12 9.3E-17 128.4 11.3 186 278-602 28-218 (333)
161 COG0542 clpA ATP-binding subun 99.3 1.5E-11 3.2E-16 143.5 17.1 192 271-585 165-369 (786)
162 PRK00411 cdc6 cell division co 99.3 4.4E-11 9.5E-16 131.1 19.7 213 277-608 30-264 (394)
163 KOG2170 ATPase of the AAA+ sup 99.3 2E-11 4.3E-16 127.7 15.7 212 266-551 71-298 (344)
164 PTZ00112 origin recognition co 99.3 2.9E-11 6.2E-16 141.0 18.2 205 278-604 756-987 (1164)
165 KOG0742 AAA+-type ATPase [Post 99.3 5E-12 1.1E-16 136.0 11.0 192 331-603 385-589 (630)
166 TIGR02928 orc1/cdc6 family rep 99.3 3.7E-11 7.9E-16 130.2 18.0 213 278-608 16-256 (365)
167 TIGR00362 DnaA chromosomal rep 99.3 1.5E-11 3.3E-16 136.0 15.1 173 331-607 137-319 (405)
168 TIGR00764 lon_rel lon-related 99.3 8.7E-12 1.9E-16 144.5 13.7 141 391-602 213-367 (608)
169 PTZ00111 DNA replication licen 99.3 2.6E-11 5.7E-16 143.3 17.7 160 271-470 444-610 (915)
170 KOG0743 AAA+-type ATPase [Post 99.3 3.6E-11 7.8E-16 131.8 16.7 169 331-584 236-416 (457)
171 PF07728 AAA_5: AAA domain (dy 99.3 1.1E-12 2.3E-17 123.2 4.1 121 332-470 1-124 (139)
172 PF06068 TIP49: TIP49 C-termin 99.3 1.6E-11 3.5E-16 132.3 13.4 63 278-367 25-89 (398)
173 PRK08727 hypothetical protein; 99.3 6.7E-11 1.5E-15 121.7 16.7 168 331-608 42-214 (233)
174 PHA02244 ATPase-like protein 99.3 1.2E-10 2.6E-15 126.4 19.0 184 331-583 120-305 (383)
175 PRK06893 DNA replication initi 99.3 6.5E-11 1.4E-15 121.4 16.2 165 331-604 40-209 (229)
176 PRK00149 dnaA chromosomal repl 99.3 2.5E-11 5.4E-16 136.2 13.8 176 331-607 149-331 (450)
177 PRK05642 DNA replication initi 99.3 1E-10 2.2E-15 120.4 16.9 168 331-608 46-218 (234)
178 TIGR02031 BchD-ChlD magnesium 99.3 5.3E-11 1.1E-15 137.7 15.5 207 331-607 17-239 (589)
179 PRK14086 dnaA chromosomal repl 99.3 1.2E-10 2.6E-15 133.6 17.9 176 331-607 315-497 (617)
180 PF00308 Bac_DnaA: Bacterial d 99.2 5.8E-11 1.2E-15 121.2 13.2 172 331-606 35-216 (219)
181 PF05673 DUF815: Protein of un 99.2 2.9E-10 6.2E-15 117.2 18.0 173 279-551 29-205 (249)
182 PRK09112 DNA polymerase III su 99.2 2E-10 4.4E-15 125.1 17.9 184 278-599 24-241 (351)
183 PF07726 AAA_3: ATPase family 99.2 3E-12 6.4E-17 119.8 2.4 111 332-470 1-113 (131)
184 PRK14088 dnaA chromosomal repl 99.2 1.3E-10 2.7E-15 130.3 15.9 177 331-607 131-314 (440)
185 PRK12422 chromosomal replicati 99.2 1.3E-10 2.8E-15 130.3 13.2 171 331-605 142-320 (445)
186 PRK14087 dnaA chromosomal repl 99.2 3E-10 6.6E-15 127.5 16.1 179 331-608 142-329 (450)
187 PRK07471 DNA polymerase III su 99.2 5.1E-10 1.1E-14 122.6 17.4 154 278-551 20-211 (365)
188 TIGR00678 holB DNA polymerase 99.2 2.1E-10 4.5E-15 113.5 12.5 142 331-584 15-180 (188)
189 PRK09862 putative ATP-dependen 99.2 8.6E-10 1.9E-14 125.0 17.8 229 331-612 211-476 (506)
190 PRK05564 DNA polymerase III su 99.2 5.6E-10 1.2E-14 119.5 15.5 107 278-435 5-119 (313)
191 PRK07399 DNA polymerase III su 99.1 1.4E-09 2.9E-14 117.0 17.5 112 278-434 5-149 (314)
192 COG4650 RtcR Sigma54-dependent 99.1 3.2E-10 6.9E-15 118.1 11.7 199 331-604 209-424 (531)
193 PRK13765 ATP-dependent proteas 99.1 3E-10 6.4E-15 131.9 11.9 48 274-355 28-75 (637)
194 PRK06620 hypothetical protein; 99.1 2.4E-09 5.2E-14 109.1 17.0 63 525-603 130-194 (214)
195 PF14532 Sigma54_activ_2: Sigm 99.1 3.2E-11 6.9E-16 113.9 2.2 70 331-434 22-94 (138)
196 PRK08058 DNA polymerase III su 99.1 1.2E-09 2.6E-14 118.0 14.5 106 278-435 6-136 (329)
197 COG1474 CDC6 Cdc6-related prot 99.1 2.9E-09 6.3E-14 116.6 17.6 210 279-609 19-248 (366)
198 cd00009 AAA The AAA+ (ATPases 99.1 6.7E-10 1.5E-14 101.4 10.5 86 331-434 20-109 (151)
199 PF13177 DNA_pol3_delta2: DNA 99.1 1.9E-09 4.2E-14 105.0 14.2 105 281-435 1-128 (162)
200 COG0470 HolB ATPase involved i 99.1 9.6E-10 2.1E-14 116.5 12.7 99 331-468 25-147 (325)
201 PRK04132 replication factor C 99.1 1.1E-09 2.5E-14 130.0 14.5 168 326-603 560-736 (846)
202 COG1241 MCM2 Predicted ATPase 99.1 1E-09 2.2E-14 127.3 12.9 253 274-610 283-576 (682)
203 KOG1942 DNA helicase, TBP-inte 99.0 3.6E-09 7.8E-14 110.4 15.4 115 394-601 295-410 (456)
204 smart00763 AAA_PrkA PrkA AAA d 99.0 4.9E-09 1.1E-13 113.9 16.3 60 278-363 52-118 (361)
205 KOG1969 DNA replication checkp 99.0 7E-09 1.5E-13 118.8 17.3 87 330-434 326-412 (877)
206 KOG0480 DNA replication licens 99.0 3.8E-09 8.2E-14 119.3 14.1 251 271-610 339-625 (764)
207 PRK09087 hypothetical protein; 99.0 3.7E-09 8.1E-14 108.5 12.9 69 524-608 135-205 (226)
208 COG1239 ChlI Mg-chelatase subu 99.0 2.7E-09 5.8E-14 116.7 11.9 209 274-586 14-281 (423)
209 COG2607 Predicted ATPase (AAA+ 99.0 8.3E-09 1.8E-13 105.4 14.4 173 278-551 61-237 (287)
210 KOG0735 AAA+-type ATPase [Post 99.0 6.8E-09 1.5E-13 118.4 14.7 194 328-608 429-626 (952)
211 PRK13406 bchD magnesium chelat 99.0 7.6E-09 1.6E-13 119.4 15.0 198 331-604 26-228 (584)
212 PRK05707 DNA polymerase III su 98.9 1.1E-08 2.5E-13 110.5 14.9 130 331-551 23-176 (328)
213 TIGR03015 pepcterm_ATPase puta 98.9 4E-08 8.6E-13 101.9 18.3 70 526-609 178-249 (269)
214 KOG0478 DNA replication licens 98.9 9.8E-09 2.1E-13 116.8 12.1 231 271-584 423-672 (804)
215 PRK06871 DNA polymerase III su 98.8 6.1E-08 1.3E-12 104.6 16.3 129 331-551 25-177 (325)
216 PRK07993 DNA polymerase III su 98.8 4.4E-08 9.6E-13 106.2 14.6 132 331-551 25-178 (334)
217 PRK08769 DNA polymerase III su 98.8 6.8E-08 1.5E-12 104.1 15.6 135 331-551 27-183 (319)
218 KOG0736 Peroxisome assembly fa 98.8 3.4E-08 7.4E-13 113.7 12.0 147 331-555 432-578 (953)
219 PF00493 MCM: MCM2/3/5 family 98.7 5.1E-09 1.1E-13 113.3 2.3 254 271-606 18-306 (331)
220 PRK06090 DNA polymerase III su 98.7 2.6E-07 5.6E-12 99.6 15.1 130 331-551 26-178 (319)
221 PRK06964 DNA polymerase III su 98.7 7.8E-08 1.7E-12 104.5 10.9 133 330-551 21-202 (342)
222 PRK11331 5-methylcytosine-spec 98.7 2.8E-07 6E-12 102.9 14.6 123 331-471 195-336 (459)
223 TIGR00602 rad24 checkpoint pro 98.7 1.9E-07 4.1E-12 108.7 13.5 70 524-604 257-329 (637)
224 smart00382 AAA ATPases associa 98.6 9.1E-08 2E-12 86.2 8.4 76 331-410 3-93 (148)
225 COG0593 DnaA ATPase involved i 98.6 2.8E-07 6E-12 101.8 13.5 176 331-609 114-297 (408)
226 KOG2680 DNA helicase TIP49, TB 98.6 6.8E-07 1.5E-11 94.0 14.3 63 278-367 41-105 (454)
227 KOG2035 Replication factor C, 98.6 5.2E-07 1.1E-11 94.1 13.3 163 331-599 35-226 (351)
228 KOG0477 DNA replication licens 98.6 4.8E-08 1E-12 110.1 4.8 156 271-470 443-599 (854)
229 KOG0990 Replication factor C, 98.5 1.3E-07 2.8E-12 100.2 6.9 90 331-434 63-156 (360)
230 PRK08699 DNA polymerase III su 98.5 5.4E-07 1.2E-11 97.5 11.9 87 331-434 22-138 (325)
231 KOG2227 Pre-initiation complex 98.5 1.1E-06 2.5E-11 97.0 13.2 208 278-606 151-379 (529)
232 PRK05917 DNA polymerase III su 98.5 2E-06 4.2E-11 91.5 14.3 88 331-435 20-121 (290)
233 PF13173 AAA_14: AAA domain 98.5 9.7E-07 2.1E-11 82.3 10.3 70 331-408 3-74 (128)
234 KOG0741 AAA+-type ATPase [Post 98.5 6.7E-06 1.4E-10 92.0 18.3 96 330-434 538-633 (744)
235 PF06309 Torsin: Torsin; Inte 98.4 1.5E-06 3.3E-11 81.4 10.8 64 266-354 14-77 (127)
236 PRK08116 hypothetical protein; 98.4 9.8E-07 2.1E-11 93.0 8.6 85 331-434 115-205 (268)
237 KOG0481 DNA replication licens 98.4 9.9E-07 2.2E-11 98.0 8.9 255 271-610 325-621 (729)
238 PRK07132 DNA polymerase III su 98.4 8.8E-06 1.9E-10 87.2 15.8 84 331-435 19-116 (299)
239 PRK07276 DNA polymerase III su 98.4 6.1E-06 1.3E-10 87.9 14.4 86 331-435 25-130 (290)
240 PRK12377 putative replication 98.3 1.5E-06 3.2E-11 90.7 9.1 84 331-435 102-191 (248)
241 PF01637 Arch_ATPase: Archaeal 98.3 2.6E-06 5.7E-11 85.0 10.6 47 525-584 177-223 (234)
242 KOG1514 Origin recognition com 98.3 5.1E-06 1.1E-10 95.6 13.9 184 331-609 423-631 (767)
243 PF12774 AAA_6: Hydrolytic ATP 98.3 9.7E-06 2.1E-10 83.8 14.4 67 331-410 33-99 (231)
244 COG5271 MDN1 AAA ATPase contai 98.3 3.2E-06 6.9E-11 102.9 11.1 155 331-554 1544-1704(4600)
245 COG5271 MDN1 AAA ATPase contai 98.3 4.5E-06 9.8E-11 101.6 11.6 146 331-552 889-1046(4600)
246 PRK05818 DNA polymerase III su 98.2 1.3E-05 2.7E-10 84.0 13.2 90 329-435 6-114 (261)
247 PF05621 TniB: Bacterial TniB 98.2 7.2E-05 1.6E-09 79.8 18.7 69 270-364 27-104 (302)
248 PF13401 AAA_22: AAA domain; P 98.2 4E-06 8.8E-11 77.1 7.3 36 331-366 5-48 (131)
249 PRK06526 transposase; Provisio 98.2 1.3E-06 2.7E-11 91.5 4.1 86 330-434 98-186 (254)
250 PF10431 ClpB_D2-small: C-term 98.1 3.4E-06 7.5E-11 72.7 5.3 69 540-612 1-69 (81)
251 PF12775 AAA_7: P-loop contain 98.1 1.8E-05 4E-10 83.6 11.7 201 331-606 34-255 (272)
252 KOG0479 DNA replication licens 98.1 8.7E-05 1.9E-09 84.0 17.0 146 271-469 295-450 (818)
253 COG1484 DnaC DNA replication p 98.1 8.3E-06 1.8E-10 85.4 8.4 70 331-410 106-182 (254)
254 PRK08181 transposase; Validate 98.1 3.9E-06 8.4E-11 88.6 5.7 85 331-434 107-194 (269)
255 PRK07952 DNA replication prote 98.1 1E-05 2.2E-10 84.2 8.3 85 331-434 100-189 (244)
256 PF03215 Rad17: Rad17 cell cyc 98.0 0.00014 3.1E-09 83.3 16.4 94 331-434 46-161 (519)
257 KOG0482 DNA replication licens 98.0 3.3E-06 7.2E-11 93.8 2.8 137 271-446 336-476 (721)
258 PF01695 IstB_IS21: IstB-like 98.0 9.6E-06 2.1E-10 80.5 5.8 82 331-434 48-135 (178)
259 PRK06835 DNA replication prote 97.9 1.9E-05 4.2E-10 85.6 6.6 85 331-434 184-273 (329)
260 PRK15455 PrkA family serine pr 97.9 0.00015 3.4E-09 83.2 13.9 59 279-363 78-137 (644)
261 PRK06921 hypothetical protein; 97.9 2.1E-05 4.5E-10 82.9 6.3 36 331-366 118-157 (266)
262 PRK09183 transposase/IS protei 97.9 2.1E-05 4.4E-10 82.6 6.0 87 330-434 102-191 (259)
263 PF05729 NACHT: NACHT domain 97.8 0.00026 5.6E-09 67.1 12.7 78 332-410 2-96 (166)
264 PF00910 RNA_helicase: RNA hel 97.8 7.9E-05 1.7E-09 67.6 8.2 83 333-439 1-83 (107)
265 PF07693 KAP_NTPase: KAP famil 97.6 0.00099 2.1E-08 71.1 14.7 35 330-364 20-60 (325)
266 COG0464 SpoVK ATPases of the A 97.6 0.00057 1.2E-08 77.9 13.4 97 329-435 17-113 (494)
267 PRK08939 primosomal protein Dn 97.6 0.0001 2.2E-09 79.3 6.7 68 331-408 157-230 (306)
268 PF13191 AAA_16: AAA ATPase do 97.6 9.9E-05 2.2E-09 71.6 5.9 59 279-366 2-63 (185)
269 COG3267 ExeA Type II secretory 97.4 0.0025 5.4E-08 66.5 14.0 68 525-610 185-253 (269)
270 PF13207 AAA_17: AAA domain; P 97.4 0.00013 2.9E-09 66.3 4.0 31 333-363 2-32 (121)
271 KOG1808 AAA ATPase containing 97.4 0.00068 1.5E-08 86.1 11.1 107 331-451 441-550 (1856)
272 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.0019 4.1E-08 70.4 13.0 52 277-354 61-112 (358)
273 cd01120 RecA-like_NTPases RecA 97.4 0.00024 5.3E-09 66.6 5.5 32 333-364 2-36 (165)
274 PHA00729 NTP-binding motif con 97.3 0.0004 8.6E-09 71.6 6.8 25 331-355 18-42 (226)
275 KOG1051 Chaperone HSP104 and r 97.3 0.0015 3.2E-08 78.6 12.5 94 331-434 209-313 (898)
276 PF03266 NTPase_1: NTPase; In 97.3 0.00051 1.1E-08 67.7 7.0 23 332-354 1-23 (168)
277 PRK00131 aroK shikimate kinase 97.3 0.00023 5E-09 68.5 4.5 33 330-362 4-36 (175)
278 PF10923 DUF2791: P-loop Domai 97.3 0.011 2.4E-07 66.1 18.1 161 394-612 238-402 (416)
279 PF13604 AAA_30: AAA domain; P 97.2 0.00093 2E-08 67.2 8.2 89 331-434 19-118 (196)
280 KOG2543 Origin recognition com 97.2 0.0045 9.8E-08 67.8 12.7 64 274-366 3-66 (438)
281 PRK07261 topology modulation p 97.1 0.00093 2E-08 65.7 6.6 43 332-375 2-44 (171)
282 PHA02624 large T antigen; Prov 97.1 0.0034 7.3E-08 72.8 11.8 87 331-440 432-521 (647)
283 PRK13947 shikimate kinase; Pro 97.1 0.00047 1E-08 66.8 4.3 32 332-363 3-34 (171)
284 PRK08118 topology modulation p 97.1 0.00048 1.1E-08 67.5 4.1 33 331-363 2-34 (167)
285 KOG1970 Checkpoint RAD17-RFC c 97.1 0.019 4E-07 65.6 16.6 32 331-362 111-142 (634)
286 PF03969 AFG1_ATPase: AFG1-lik 97.1 0.0035 7.5E-08 69.1 10.8 28 329-356 61-88 (362)
287 TIGR02688 conserved hypothetic 97.0 0.0016 3.4E-08 72.8 7.9 101 331-470 210-313 (449)
288 PRK10536 hypothetical protein; 97.0 0.0028 6E-08 66.7 9.0 23 331-353 75-97 (262)
289 PRK03839 putative kinase; Prov 97.0 0.00066 1.4E-08 66.7 4.1 31 332-362 2-32 (180)
290 cd00464 SK Shikimate kinase (S 97.0 0.00071 1.5E-08 64.0 4.2 31 332-362 1-31 (154)
291 PHA02774 E1; Provisional 97.0 0.0043 9.4E-08 71.6 11.1 76 331-440 435-511 (613)
292 PRK00625 shikimate kinase; Pro 97.0 0.00075 1.6E-08 66.8 4.2 31 332-362 2-32 (173)
293 PRK00771 signal recognition pa 97.0 0.1 2.2E-06 59.2 21.5 38 329-366 94-134 (437)
294 COG1373 Predicted ATPase (AAA+ 96.9 0.0078 1.7E-07 67.2 12.3 70 332-409 39-108 (398)
295 PRK09376 rho transcription ter 96.9 0.0017 3.8E-08 71.8 6.9 79 331-410 170-271 (416)
296 PRK04296 thymidine kinase; Pro 96.9 0.0033 7.1E-08 62.9 8.2 24 331-354 3-26 (190)
297 PF13671 AAA_33: AAA domain; P 96.9 0.00061 1.3E-08 63.6 2.6 26 333-358 2-27 (143)
298 PF00931 NB-ARC: NB-ARC domain 96.9 0.0076 1.7E-07 62.9 11.0 23 331-353 20-42 (287)
299 COG3854 SpoIIIAA ncharacterize 96.9 0.0062 1.4E-07 62.9 9.8 76 331-407 138-230 (308)
300 TIGR01618 phage_P_loop phage n 96.8 0.0012 2.6E-08 68.0 4.7 76 330-409 12-95 (220)
301 cd01128 rho_factor Transcripti 96.8 0.0022 4.8E-08 67.1 6.4 26 331-356 17-42 (249)
302 PRK13948 shikimate kinase; Pro 96.8 0.0015 3.2E-08 65.3 4.7 34 329-362 9-42 (182)
303 PRK14532 adenylate kinase; Pro 96.8 0.0012 2.6E-08 65.2 4.0 33 332-366 2-34 (188)
304 PRK06217 hypothetical protein; 96.8 0.0013 2.9E-08 65.0 4.3 32 331-362 2-33 (183)
305 PRK13949 shikimate kinase; Pro 96.8 0.0013 2.8E-08 64.7 4.0 32 331-362 2-33 (169)
306 COG1618 Predicted nucleotide k 96.7 0.003 6.6E-08 61.9 6.3 24 331-354 6-29 (179)
307 KOG3347 Predicted nucleotide k 96.7 0.0013 2.9E-08 63.5 3.6 36 330-367 7-42 (176)
308 TIGR01425 SRP54_euk signal rec 96.7 0.19 4.2E-06 56.7 20.9 36 330-365 100-138 (429)
309 cd01124 KaiC KaiC is a circadi 96.7 0.0038 8.3E-08 60.9 6.7 31 333-363 2-35 (187)
310 PRK14974 cell division protein 96.7 0.0089 1.9E-07 65.3 10.1 35 330-364 140-177 (336)
311 COG0703 AroK Shikimate kinase 96.7 0.0014 3.1E-08 64.8 3.6 32 331-362 3-34 (172)
312 PRK14530 adenylate kinase; Pro 96.7 0.0019 4E-08 65.6 4.5 31 331-361 4-34 (215)
313 cd02021 GntK Gluconate kinase 96.7 0.0016 3.4E-08 61.8 3.8 28 333-360 2-29 (150)
314 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0017 3.6E-08 63.6 4.0 33 333-367 2-34 (183)
315 cd02020 CMPK Cytidine monophos 96.7 0.0018 3.8E-08 60.6 3.9 30 333-362 2-31 (147)
316 PRK14531 adenylate kinase; Pro 96.6 0.0021 4.6E-08 63.6 4.4 30 331-360 3-32 (183)
317 PF00448 SRP54: SRP54-type pro 96.6 0.0077 1.7E-07 60.8 8.5 24 331-354 2-25 (196)
318 PRK05057 aroK shikimate kinase 96.6 0.0023 5E-08 63.0 4.5 33 331-363 5-37 (172)
319 PRK03731 aroL shikimate kinase 96.6 0.0023 5E-08 62.1 4.4 32 331-362 3-34 (171)
320 TIGR01313 therm_gnt_kin carboh 96.6 0.0017 3.7E-08 62.5 3.5 28 333-360 1-28 (163)
321 cd01428 ADK Adenylate kinase ( 96.6 0.0019 4.2E-08 63.5 3.9 28 333-360 2-29 (194)
322 TIGR03574 selen_PSTK L-seryl-t 96.6 0.07 1.5E-06 55.4 15.5 34 333-366 2-38 (249)
323 PRK13946 shikimate kinase; Pro 96.6 0.0021 4.5E-08 63.8 3.9 34 330-363 10-43 (184)
324 cd00227 CPT Chloramphenicol (C 96.5 0.002 4.4E-08 63.1 3.7 34 331-364 3-36 (175)
325 PRK06581 DNA polymerase III su 96.5 0.023 4.9E-07 59.4 11.4 88 331-435 16-115 (263)
326 PRK08154 anaerobic benzoate ca 96.5 0.0049 1.1E-07 66.4 6.6 32 331-362 134-165 (309)
327 PRK12723 flagellar biosynthesi 96.5 0.016 3.4E-07 64.6 10.7 25 330-354 174-198 (388)
328 TIGR00767 rho transcription te 96.4 0.007 1.5E-07 67.3 7.5 80 331-410 169-270 (415)
329 PTZ00088 adenylate kinase 1; P 96.4 0.0032 6.9E-08 65.1 4.3 32 331-362 7-38 (229)
330 PF14516 AAA_35: AAA-like doma 96.4 0.031 6.7E-07 60.8 12.0 37 331-367 32-71 (331)
331 PRK06762 hypothetical protein; 96.3 0.0037 7.9E-08 60.4 4.2 35 331-365 3-37 (166)
332 PRK06547 hypothetical protein; 96.3 0.0037 7.9E-08 61.9 4.2 32 331-362 16-47 (172)
333 PF01583 APS_kinase: Adenylyls 96.3 0.0076 1.6E-07 58.9 6.2 37 331-367 3-42 (156)
334 cd01131 PilT Pilus retraction 96.3 0.011 2.3E-07 59.6 7.4 25 331-355 2-26 (198)
335 COG0563 Adk Adenylate kinase a 96.3 0.0036 7.9E-08 62.3 4.0 33 332-366 2-34 (178)
336 PHA01747 putative ATP-dependen 96.3 0.018 3.9E-07 63.1 9.5 83 329-434 189-271 (425)
337 PRK14528 adenylate kinase; Pro 96.3 0.0042 9E-08 61.9 4.3 30 331-360 2-31 (186)
338 PF13238 AAA_18: AAA domain; P 96.2 0.0038 8.2E-08 56.7 3.3 22 333-354 1-22 (129)
339 KOG1968 Replication factor C, 96.2 0.012 2.5E-07 71.4 8.1 76 332-409 359-442 (871)
340 cd02027 APSK Adenosine 5'-phos 96.2 0.012 2.7E-07 56.4 6.9 33 333-365 2-37 (149)
341 PRK02496 adk adenylate kinase; 96.2 0.0046 1E-07 60.9 3.9 29 332-360 3-31 (184)
342 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0053 1.1E-07 60.0 4.2 29 331-359 4-32 (188)
343 PLN03210 Resistant to P. syrin 96.1 0.026 5.7E-07 71.0 11.2 27 331-357 208-234 (1153)
344 PLN02200 adenylate kinase fami 96.1 0.0075 1.6E-07 62.5 4.9 36 330-367 43-78 (234)
345 TIGR01351 adk adenylate kinase 96.1 0.0056 1.2E-07 61.8 3.9 28 333-360 2-29 (210)
346 TIGR02237 recomb_radB DNA repa 96.1 0.018 4E-07 57.7 7.6 35 331-365 13-50 (209)
347 COG1102 Cmk Cytidylate kinase 96.0 0.0057 1.2E-07 60.0 3.6 28 333-360 3-30 (179)
348 TIGR01448 recD_rel helicase, p 96.0 0.025 5.5E-07 67.8 9.9 89 331-434 339-441 (720)
349 PF05970 PIF1: PIF1-like helic 96.0 0.013 2.8E-07 64.6 6.9 26 331-356 23-48 (364)
350 PRK00279 adk adenylate kinase; 96.0 0.0064 1.4E-07 61.7 4.1 29 332-360 2-30 (215)
351 TIGR03499 FlhF flagellar biosy 96.0 0.081 1.8E-06 56.3 12.4 36 330-365 194-234 (282)
352 PRK11889 flhF flagellar biosyn 95.9 0.087 1.9E-06 58.9 12.8 35 330-364 241-278 (436)
353 PRK04040 adenylate kinase; Pro 95.9 0.0084 1.8E-07 60.1 4.3 28 331-358 3-32 (188)
354 PF13245 AAA_19: Part of AAA d 95.9 0.013 2.8E-07 50.3 4.8 24 331-354 11-35 (76)
355 COG0572 Udk Uridine kinase [Nu 95.9 0.051 1.1E-06 55.8 9.8 105 331-465 9-114 (218)
356 PHA02530 pseT polynucleotide k 95.8 0.0083 1.8E-07 63.6 4.2 31 331-361 3-34 (300)
357 PRK08233 hypothetical protein; 95.8 0.012 2.5E-07 57.3 4.8 34 331-364 4-38 (182)
358 COG0529 CysC Adenylylsulfate k 95.8 0.024 5.3E-07 56.4 6.9 72 331-402 24-100 (197)
359 cd02019 NK Nucleoside/nucleoti 95.8 0.015 3.3E-07 48.6 4.7 22 333-354 2-23 (69)
360 PRK14527 adenylate kinase; Pro 95.8 0.0077 1.7E-07 59.9 3.5 29 331-359 7-35 (191)
361 PRK04182 cytidylate kinase; Pr 95.8 0.0098 2.1E-07 57.6 4.2 29 332-360 2-30 (180)
362 PF12780 AAA_8: P-loop contain 95.8 0.038 8.3E-07 58.6 8.8 72 330-408 31-102 (268)
363 PF09848 DUF2075: Uncharacteri 95.8 0.02 4.3E-07 62.7 6.9 24 331-354 2-25 (352)
364 PF05272 VirE: Virulence-assoc 95.8 0.023 4.9E-07 57.6 6.8 97 331-469 53-149 (198)
365 PRK14722 flhF flagellar biosyn 95.8 0.048 1E-06 60.4 9.9 25 330-354 137-161 (374)
366 TIGR01420 pilT_fam pilus retra 95.7 0.025 5.5E-07 61.8 7.5 25 331-355 123-147 (343)
367 PRK11823 DNA repair protein Ra 95.7 0.052 1.1E-06 61.6 10.1 35 331-365 81-118 (446)
368 PRK06067 flagellar accessory p 95.7 0.025 5.5E-07 58.0 7.0 33 331-363 26-61 (234)
369 TIGR01526 nadR_NMN_Atrans nico 95.7 0.017 3.7E-07 62.7 6.0 37 331-367 163-199 (325)
370 PF01745 IPT: Isopentenyl tran 95.7 0.011 2.3E-07 60.6 4.0 37 331-367 2-38 (233)
371 PRK06696 uridine kinase; Valid 95.6 0.014 3.1E-07 59.6 4.9 37 331-367 23-62 (223)
372 TIGR02173 cyt_kin_arch cytidyl 95.6 0.011 2.5E-07 56.7 3.9 30 332-361 2-31 (171)
373 PF08433 KTI12: Chromatin asso 95.6 0.024 5.3E-07 60.1 6.6 77 332-409 3-84 (270)
374 PRK01184 hypothetical protein; 95.6 0.012 2.5E-07 58.0 3.9 29 332-361 3-31 (184)
375 cd01121 Sms Sms (bacterial rad 95.6 0.052 1.1E-06 60.2 9.3 34 331-364 83-119 (372)
376 PRK05800 cobU adenosylcobinami 95.6 0.024 5.2E-07 56.0 6.0 33 332-364 3-35 (170)
377 PRK04220 2-phosphoglycerate ki 95.6 0.026 5.6E-07 60.7 6.7 28 331-358 93-120 (301)
378 PF00406 ADK: Adenylate kinase 95.6 0.0091 2E-07 57.0 2.9 31 335-367 1-31 (151)
379 PLN02199 shikimate kinase 95.5 0.014 2.9E-07 62.7 4.4 32 331-362 103-134 (303)
380 PLN02674 adenylate kinase 95.5 0.014 2.9E-07 61.2 4.4 35 331-367 32-66 (244)
381 PF00437 T2SE: Type II/IV secr 95.5 0.038 8.2E-07 57.9 7.7 68 331-406 128-208 (270)
382 smart00487 DEXDc DEAD-like hel 95.5 0.036 7.7E-07 52.9 7.0 24 331-354 25-49 (201)
383 PTZ00301 uridine kinase; Provi 95.5 0.047 1E-06 55.8 8.1 24 331-354 4-27 (210)
384 COG1936 Predicted nucleotide k 95.5 0.011 2.3E-07 58.6 3.2 30 332-362 2-31 (180)
385 PRK14526 adenylate kinase; Pro 95.5 0.014 3E-07 59.6 4.2 33 332-366 2-34 (211)
386 PRK10078 ribose 1,5-bisphospho 95.5 0.012 2.6E-07 58.3 3.7 29 331-359 3-31 (186)
387 TIGR02768 TraA_Ti Ti-type conj 95.5 0.044 9.5E-07 66.0 8.9 77 331-410 369-454 (744)
388 PF13521 AAA_28: AAA domain; P 95.4 0.012 2.6E-07 56.8 3.3 26 333-359 2-27 (163)
389 PF02562 PhoH: PhoH-like prote 95.4 0.048 1E-06 55.6 7.7 24 331-354 20-43 (205)
390 TIGR02012 tigrfam_recA protein 95.4 0.045 9.8E-07 59.5 7.9 76 331-410 56-148 (321)
391 PLN02165 adenylate isopentenyl 95.4 0.014 3.1E-07 63.5 4.0 33 331-363 44-76 (334)
392 TIGR02858 spore_III_AA stage I 95.4 0.05 1.1E-06 57.8 8.0 25 331-355 112-136 (270)
393 PRK03846 adenylylsulfate kinas 95.4 0.05 1.1E-06 54.5 7.6 36 331-366 25-63 (198)
394 PF13086 AAA_11: AAA domain; P 95.3 0.013 2.8E-07 58.4 3.3 22 333-354 20-41 (236)
395 TIGR02782 TrbB_P P-type conjug 95.3 0.068 1.5E-06 57.5 9.0 24 331-354 133-156 (299)
396 PRK09361 radB DNA repair and r 95.3 0.037 8E-07 56.3 6.7 34 331-364 24-60 (225)
397 PRK12608 transcription termina 95.3 0.033 7.2E-07 61.6 6.7 79 331-409 134-234 (380)
398 KOG3354 Gluconate kinase [Carb 95.3 0.017 3.7E-07 56.3 3.8 36 330-367 12-47 (191)
399 cd01129 PulE-GspE PulE/GspE Th 95.3 0.046 1E-06 57.7 7.4 68 331-406 81-160 (264)
400 PF01443 Viral_helicase1: Vira 95.3 0.022 4.9E-07 57.6 4.9 22 333-354 1-22 (234)
401 PRK00091 miaA tRNA delta(2)-is 95.3 0.018 3.8E-07 62.3 4.3 34 331-364 5-38 (307)
402 cd00544 CobU Adenosylcobinamid 95.2 0.062 1.3E-06 53.1 7.7 31 333-363 2-32 (169)
403 PRK10867 signal recognition pa 95.2 1.1 2.4E-05 50.8 18.5 38 330-367 100-141 (433)
404 PF13479 AAA_24: AAA domain 95.2 0.02 4.4E-07 58.2 4.4 20 331-350 4-23 (213)
405 COG1485 Predicted ATPase [Gene 95.2 0.2 4.2E-06 54.9 11.8 27 329-355 64-90 (367)
406 PRK13889 conjugal transfer rel 95.2 0.05 1.1E-06 67.0 8.3 89 331-434 363-458 (988)
407 PRK00889 adenylylsulfate kinas 95.2 0.027 5.8E-07 55.0 4.9 35 331-365 5-42 (175)
408 PRK05541 adenylylsulfate kinas 95.2 0.018 4E-07 56.2 3.7 26 330-355 7-32 (176)
409 cd01130 VirB11-like_ATPase Typ 95.2 0.074 1.6E-06 52.8 8.0 25 331-355 26-50 (186)
410 PRK14529 adenylate kinase; Pro 95.1 0.018 3.9E-07 59.4 3.6 28 332-359 2-29 (223)
411 PRK13900 type IV secretion sys 95.1 0.092 2E-06 57.4 9.1 25 331-355 161-185 (332)
412 PLN02796 D-glycerate 3-kinase 95.1 0.61 1.3E-05 51.3 15.3 25 331-355 101-125 (347)
413 PRK12339 2-phosphoglycerate ki 95.1 0.026 5.6E-07 57.1 4.6 28 331-358 4-31 (197)
414 smart00534 MUTSac ATPase domai 95.0 0.078 1.7E-06 52.6 7.9 20 333-352 2-21 (185)
415 PF06048 DUF927: Domain of unk 95.0 0.16 3.4E-06 54.2 10.5 105 265-410 153-257 (286)
416 TIGR02322 phosphon_PhnN phosph 95.0 0.02 4.3E-07 56.0 3.4 26 331-356 2-27 (179)
417 TIGR00455 apsK adenylylsulfate 95.0 0.068 1.5E-06 52.7 7.2 36 331-366 19-57 (184)
418 PLN02459 probable adenylate ki 95.0 0.031 6.8E-07 59.0 5.0 34 331-366 30-63 (261)
419 TIGR00150 HI0065_YjeE ATPase, 95.0 0.027 5.9E-07 53.6 4.1 27 331-357 23-49 (133)
420 PRK10875 recD exonuclease V su 94.9 0.13 2.8E-06 60.7 10.5 24 331-354 168-191 (615)
421 PRK05480 uridine/cytidine kina 94.9 0.037 8E-07 55.7 5.2 35 331-365 7-42 (209)
422 PRK04841 transcriptional regul 94.9 0.27 5.8E-06 59.9 13.5 31 331-362 33-63 (903)
423 KOG0922 DEAH-box RNA helicase 94.9 0.14 3E-06 59.8 10.2 15 331-345 67-81 (674)
424 PRK13764 ATPase; Provisional 94.9 0.047 1E-06 63.9 6.7 25 331-355 258-282 (602)
425 COG4178 ABC-type uncharacteriz 94.9 0.12 2.7E-06 60.2 9.9 24 331-354 420-443 (604)
426 COG2804 PulE Type II secretory 94.9 0.1 2.2E-06 59.5 9.0 86 331-439 259-356 (500)
427 PRK13975 thymidylate kinase; P 94.9 0.041 8.8E-07 54.4 5.3 27 331-357 3-29 (196)
428 PRK12727 flagellar biosynthesi 94.8 0.39 8.5E-06 55.5 13.4 25 330-354 350-374 (559)
429 PF04851 ResIII: Type III rest 94.7 0.057 1.2E-06 51.8 5.8 32 331-362 26-57 (184)
430 PRK09825 idnK D-gluconate kina 94.6 0.031 6.8E-07 55.3 3.8 27 331-357 4-30 (176)
431 cd00071 GMPK Guanosine monopho 94.6 0.031 6.7E-07 53.0 3.6 26 333-358 2-27 (137)
432 TIGR02788 VirB11 P-type DNA tr 94.6 0.077 1.7E-06 57.2 6.9 25 331-355 145-169 (308)
433 PF06414 Zeta_toxin: Zeta toxi 94.6 0.037 7.9E-07 55.5 4.2 38 330-367 15-53 (199)
434 PRK05703 flhF flagellar biosyn 94.6 0.4 8.7E-06 54.1 12.9 35 331-365 222-261 (424)
435 TIGR00174 miaA tRNA isopenteny 94.6 0.037 8.1E-07 59.2 4.4 33 333-365 2-34 (287)
436 cd02022 DPCK Dephospho-coenzym 94.6 0.037 8.1E-07 54.6 4.1 32 333-367 2-33 (179)
437 cd03287 ABC_MSH3_euk MutS3 hom 94.5 0.22 4.8E-06 51.4 9.9 22 331-352 32-53 (222)
438 PRK12337 2-phosphoglycerate ki 94.5 0.1 2.3E-06 59.2 8.0 34 330-363 255-289 (475)
439 TIGR00064 ftsY signal recognit 94.5 0.12 2.5E-06 55.0 8.0 36 330-365 72-110 (272)
440 PRK05537 bifunctional sulfate 94.5 0.089 1.9E-06 61.5 7.6 36 331-366 393-432 (568)
441 PRK12338 hypothetical protein; 94.5 0.038 8.2E-07 59.9 4.3 29 330-358 4-32 (319)
442 PRK14021 bifunctional shikimat 94.5 0.038 8.2E-07 64.2 4.6 33 331-363 7-39 (542)
443 PLN02840 tRNA dimethylallyltra 94.5 0.041 8.9E-07 61.8 4.6 34 331-364 22-55 (421)
444 PF00488 MutS_V: MutS domain V 94.5 0.19 4E-06 52.3 9.2 108 331-476 44-172 (235)
445 COG0324 MiaA tRNA delta(2)-iso 94.5 0.042 9.2E-07 59.2 4.5 36 331-366 4-39 (308)
446 PF00485 PRK: Phosphoribulokin 94.5 0.032 6.9E-07 55.7 3.4 23 333-355 2-24 (194)
447 cd03282 ABC_MSH4_euk MutS4 hom 94.4 0.16 3.4E-06 51.7 8.4 24 331-354 30-53 (204)
448 PLN02348 phosphoribulokinase 94.4 0.14 3E-06 57.1 8.6 26 331-356 50-75 (395)
449 COG4088 Predicted nucleotide k 94.4 0.028 6.1E-07 57.3 2.9 24 332-355 3-26 (261)
450 PRK14737 gmk guanylate kinase; 94.4 0.035 7.6E-07 55.5 3.6 36 330-365 4-39 (186)
451 COG1125 OpuBA ABC-type proline 94.4 0.31 6.8E-06 51.4 10.5 24 331-354 28-51 (309)
452 cd02028 UMPK_like Uridine mono 94.4 0.049 1.1E-06 54.0 4.5 35 333-367 2-39 (179)
453 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.11 2.4E-06 54.6 7.4 32 331-362 37-71 (259)
454 COG4608 AppF ABC-type oligopep 94.4 0.14 3.1E-06 54.1 8.1 25 331-355 40-64 (268)
455 cd02024 NRK1 Nicotinamide ribo 94.4 0.038 8.2E-07 55.6 3.7 30 333-362 2-32 (187)
456 PRK13851 type IV secretion sys 94.4 0.081 1.8E-06 58.1 6.6 25 331-355 163-187 (344)
457 TIGR03263 guanyl_kin guanylate 94.4 0.029 6.4E-07 54.7 2.9 26 331-356 2-27 (180)
458 PRK13808 adenylate kinase; Pro 94.4 0.039 8.5E-07 60.2 4.1 29 332-360 2-30 (333)
459 cd02023 UMPK Uridine monophosp 94.3 0.055 1.2E-06 53.9 4.8 23 333-355 2-24 (198)
460 PRK11545 gntK gluconate kinase 94.3 0.03 6.4E-07 54.7 2.8 26 336-361 1-26 (163)
461 cd03243 ABC_MutS_homologs The 94.3 0.14 3.1E-06 51.3 7.8 22 331-352 30-51 (202)
462 PRK13826 Dtr system oriT relax 94.3 0.079 1.7E-06 65.9 6.9 87 331-434 398-493 (1102)
463 PRK13951 bifunctional shikimat 94.3 0.04 8.7E-07 63.2 4.2 32 332-363 2-33 (488)
464 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.097 2.1E-06 53.4 6.5 22 331-352 30-51 (213)
465 cd01394 radB RadB. The archaea 94.2 0.17 3.6E-06 51.1 8.1 34 331-364 20-56 (218)
466 cd03115 SRP The signal recogni 94.2 0.067 1.5E-06 52.0 5.0 35 332-366 2-39 (173)
467 PRK09270 nucleoside triphospha 94.2 0.097 2.1E-06 53.7 6.3 25 331-355 34-58 (229)
468 PRK08356 hypothetical protein; 94.1 0.06 1.3E-06 53.8 4.6 32 331-365 6-37 (195)
469 PRK00300 gmk guanylate kinase; 94.1 0.043 9.3E-07 54.8 3.5 25 331-355 6-30 (205)
470 PRK05986 cob(I)alamin adenolsy 94.1 0.24 5.1E-06 50.1 8.7 25 330-354 22-46 (191)
471 PRK09354 recA recombinase A; P 94.1 0.22 4.7E-06 54.8 9.1 35 331-365 61-98 (349)
472 PRK14730 coaE dephospho-CoA ki 94.1 0.051 1.1E-06 54.7 3.9 31 332-362 3-33 (195)
473 cd00983 recA RecA is a bacter 94.0 0.2 4.4E-06 54.5 8.7 80 331-410 56-148 (325)
474 TIGR00959 ffh signal recogniti 94.0 0.43 9.3E-06 54.0 11.5 37 330-366 99-139 (428)
475 COG1067 LonB Predicted ATP-dep 94.0 0.31 6.6E-06 57.7 10.7 70 387-472 217-288 (647)
476 PF05707 Zot: Zonular occluden 94.0 0.093 2E-06 52.5 5.7 72 333-412 3-96 (193)
477 KOG0058 Peptide exporter, ABC 93.9 0.23 5E-06 58.6 9.4 34 322-355 485-519 (716)
478 PRK06761 hypothetical protein; 93.9 0.059 1.3E-06 57.6 4.2 32 331-362 4-35 (282)
479 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.8 0.13 2.9E-06 48.9 6.2 24 331-354 27-50 (144)
480 COG1855 ATPase (PilT family) [ 93.8 0.071 1.5E-06 59.8 4.8 25 331-355 264-288 (604)
481 TIGR02525 plasmid_TraJ plasmid 93.8 0.17 3.7E-06 56.2 7.7 24 331-354 150-173 (372)
482 PRK07667 uridine kinase; Provi 93.8 0.086 1.9E-06 52.8 4.9 36 331-366 18-56 (193)
483 cd03283 ABC_MutS-like MutS-lik 93.8 0.14 3.1E-06 51.6 6.6 24 331-354 26-49 (199)
484 PF06745 KaiC: KaiC; InterPro 93.8 0.2 4.4E-06 50.9 7.7 34 331-364 20-57 (226)
485 cd00561 CobA_CobO_BtuR ATP:cor 93.7 0.23 5E-06 48.7 7.7 24 331-354 3-26 (159)
486 cd03280 ABC_MutS2 MutS2 homolo 93.7 0.1 2.2E-06 52.4 5.4 20 332-351 30-49 (200)
487 TIGR00235 udk uridine kinase. 93.7 0.06 1.3E-06 54.3 3.8 25 331-355 7-31 (207)
488 cd03284 ABC_MutS1 MutS1 homolo 93.7 0.11 2.4E-06 53.1 5.7 22 331-352 31-52 (216)
489 TIGR00017 cmk cytidylate kinas 93.7 0.071 1.5E-06 54.7 4.3 29 331-359 3-31 (217)
490 COG1419 FlhF Flagellar GTP-bin 93.7 0.42 9.2E-06 53.3 10.5 25 330-354 203-228 (407)
491 COG3842 PotA ABC-type spermidi 93.7 0.044 9.6E-07 60.2 2.9 33 322-354 22-55 (352)
492 TIGR01447 recD exodeoxyribonuc 93.7 0.15 3.2E-06 59.9 7.3 24 331-354 161-184 (586)
493 PLN02748 tRNA dimethylallyltra 93.7 0.086 1.9E-06 60.1 5.2 34 330-363 22-55 (468)
494 cd01123 Rad51_DMC1_radA Rad51_ 93.7 0.15 3.3E-06 51.9 6.6 35 331-365 20-63 (235)
495 PF00519 PPV_E1_C: Papillomavi 93.6 0.087 1.9E-06 58.4 5.0 77 331-441 263-340 (432)
496 PRK10436 hypothetical protein; 93.6 0.26 5.6E-06 56.2 9.0 68 331-406 219-298 (462)
497 COG1643 HrpA HrpA-like helicas 93.6 0.26 5.6E-06 59.9 9.3 17 331-347 66-82 (845)
498 PRK08099 bifunctional DNA-bind 93.6 0.075 1.6E-06 59.5 4.5 29 331-359 220-248 (399)
499 TIGR02533 type_II_gspE general 93.6 0.21 4.5E-06 57.4 8.2 69 331-407 243-323 (486)
500 PRK08485 DNA polymerase III su 93.5 0.28 6E-06 50.0 8.0 25 397-435 56-80 (206)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-67 Score=558.68 Aligned_cols=445 Identities=60% Similarity=0.884 Sum_probs=376.1
Q ss_pred cccccCCCCCCccCCCCCcceee-ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHhhhccccChHHH
Q 005670 207 SITSSYGDPPEVWQPPGDGIAVR-VNGQGPNLVRGGGSGSGFGSGSKDGCWGGSNLGNKFPTPKEICKGLDKFVIGQERA 285 (684)
Q Consensus 207 ~~~~~~~~~p~~w~~~g~g~~~r-~~~~~p~~~~gGgg~g~~g~~~~~~~~~g~pl~~~~~~~~el~~~L~~~VvGQe~a 285 (684)
.-.++..+|++.|.+ +++++.. ....--......+. ..+ .....-|+|..-.+..++|++|++.|+++||||+.|
T Consensus 78 ~~~~s~~~~~~t~~~-s~~f~~~k~~~sfv~~~~~~~~--~~~-~~~p~~~~gg~~~k~~P~PkeI~~~Ldk~VVGQe~A 153 (564)
T KOG0745|consen 78 PKCTSQCTPLETFVS-SQGFILCKCNKSFVVLYEADGA--KPG-KLSPSNRDGGFQLKPPPTPKEICEYLDKFVVGQEKA 153 (564)
T ss_pred ccccccCCchhhccC-CCCeEEeeccchhhhhhhcccC--CCC-CCCccccccccccCCCCChHHHHHHhhhheechhhh
Confidence 457788899999965 5777665 11110001011110 011 111111333333347899999999999999999999
Q ss_pred HHHHHHHHHhhhhhHhhh--hccccccCCCC--------------------------CCCCCCCCCcccccccceEEEEc
Q 005670 286 KKVLSVAVYNHYMRIYNE--SSQKRSAGESS--------------------------SCTTDGVDDDTVELEKSNILLMG 337 (684)
Q Consensus 286 k~~L~~aV~~~~~r~~~~--~~~~~~~~~~~--------------------------~~~~~~~~~~~v~~~~~~vLL~G 337 (684)
|+.|..+||+||+|+++. ..++..++.+. ..++...+++.+.+.++||||.|
T Consensus 154 KKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~dv~LeKSNvLllG 233 (564)
T KOG0745|consen 154 KKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDEDVELEKSNVLLLG 233 (564)
T ss_pred hheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccccccccceeeecccEEEEC
Confidence 999999999999999982 22221111100 11233344558999999999999
Q ss_pred cCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCC
Q 005670 338 PTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 338 PPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~ 417 (684)
|+|+|||+||+.||+.+++||+.+||+.|++++|+|++++..+.+++..+.++++++++|||||||+|++.......+..
T Consensus 234 PtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~ 313 (564)
T KOG0745|consen 234 PTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTS 313 (564)
T ss_pred CCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887777788
Q ss_pred CCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcc----ccc
Q 005670 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP----VRA 493 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~----~~~ 493 (684)
+|+++|+||+.||+++||++|+||+++..+..+++.++||++||+||+.|+|.+|+++|.+|+.+..+||+.+ ++.
T Consensus 314 RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~ 393 (564)
T KOG0745|consen 314 RDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRA 393 (564)
T ss_pred ccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 666
Q ss_pred cccc-CCCchhh-hhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccc
Q 005670 494 NMRA-GGVTDAV-VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 494 ~~~~-~~~~~~~-~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l 571 (684)
++.+ .+.+... ..+.+++.+++.||+.++++|||++||+++|+|.+|+++++.+|+.++.++|.+||+++|.+.++++
T Consensus 394 ~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L 473 (564)
T KOG0745|consen 394 NMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVEL 473 (564)
T ss_pred hcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeE
Confidence 6665 4444444 4455999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCC-CCCcceEEcCcchHHH
Q 005670 572 HFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RGCGAKILYGKGALDR 650 (684)
Q Consensus 572 ~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~-~~~~~~i~~~~g~l~~ 650 (684)
.|+++|++.||+.+..+++|||+||.++|++|+++|+++|.. +|+.|+||++.|.+.. ++.+..++.+.+.++.
T Consensus 474 ~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPGS-----dI~~V~Vdee~v~g~~~~~~s~~~~~~~~~~~~ 548 (564)
T KOG0745|consen 474 HFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPGS-----DIKAVLVDEEAVKGEKEPGYSRKILKGDEVLER 548 (564)
T ss_pred EecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCCCC-----ceEEEEecHHHhcccCCCccchhhhcccchhhh
Confidence 999999999999999999999999999999999999999944 4999999999999888 7888888888888888
Q ss_pred HHHHHHHhhh
Q 005670 651 YLAQHKRKDL 660 (684)
Q Consensus 651 ~l~~~~~~~~ 660 (684)
|+++.+.+..
T Consensus 549 ~~se~~~~~~ 558 (564)
T KOG0745|consen 549 YVSETESKDG 558 (564)
T ss_pred hccccccccC
Confidence 8887665553
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-64 Score=517.47 Aligned_cols=345 Identities=61% Similarity=0.987 Sum_probs=325.5
Q ss_pred CCCCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCc
Q 005670 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (684)
Q Consensus 263 ~~~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTG 342 (684)
...++|+++++.|+++||||+.||+.|+.+|+|||+|+.... ..+++++.++|+||.||+|+|
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~-----------------~~~dvEL~KSNILLiGPTGsG 109 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKE-----------------DNDDVELSKSNILLIGPTGSG 109 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccC-----------------CCCceeeeeccEEEECCCCCc
Confidence 358999999999999999999999999999999999986532 123488889999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcc
Q 005670 343 KTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 343 KT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (684)
||+||+.+|+.+++||...|++.|++++|+|++++..+.++++.+.+++++|+.|||||||||++.+..++.++.+|++|
T Consensus 110 KTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG 189 (408)
T COG1219 110 KTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG 189 (408)
T ss_pred HHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred hHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCch
Q 005670 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~ 502 (684)
|+||++||+++||+..+||++|+.+++..+.+++||+|++|||.|+|.+|++++..|.....+||++++... ..
T Consensus 190 EGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~------~~ 263 (408)
T COG1219 190 EGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSK------SK 263 (408)
T ss_pred hHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccch------hh
Confidence 999999999999999999999999999999999999999999999999999999999999999999887532 12
Q ss_pred hhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHH
Q 005670 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La 582 (684)
......++..++|+||++++++|||++|++++..+.+|+++++.+|+.++.|++.+||+++|++.++.+.|+++|++.+|
T Consensus 264 ~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA 343 (408)
T COG1219 264 KKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIA 343 (408)
T ss_pred hhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHH
Confidence 33457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCC
Q 005670 583 KKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 583 ~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~ 634 (684)
+++..+.+|||+||.++|.+|.+.|+++|..+ .+..++|+++.+.+..
T Consensus 344 ~~A~~rkTGARGLRsI~E~~lld~MfelPs~~----~v~~v~I~~~~v~~~~ 391 (408)
T COG1219 344 KKAIERKTGARGLRSIIEELLLDVMFELPSLE----DVEKVVITEEVVDGNA 391 (408)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHhhCCCCC----CceEEEEeHHHhCCCC
Confidence 99999999999999999999999999999876 6899999999998765
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=2.1e-49 Score=435.52 Aligned_cols=343 Identities=62% Similarity=0.982 Sum_probs=306.1
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005670 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (684)
.++|+++++.|+++|+||++||+.|..++++||+|+...... .+.+..+..++||+||||||||
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~----------------~~~~~~~~~~iLl~Gp~GtGKT 122 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKK----------------DDDVELQKSNILLIGPTGSGKT 122 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhccccc----------------ccccccCCceEEEEcCCCCCHH
Confidence 789999999999999999999999999999999987543211 0134455689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchH
Q 005670 345 LLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 345 ~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (684)
++|+++|+.++.||+.++++.+.+++|+|.+.+..+..++..+.+.++.+.++||||||||++.+.+...+.+.|+++++
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~ 202 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEG 202 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHH
Confidence 99999999999999999999999889999998888888888877778888999999999999998755556678999999
Q ss_pred HHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhh
Q 005670 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~ 504 (684)
+|++||++|||..+.+|+++..+.+....+.++++|++|||+|+|.++++++..+.....+||........ ...
T Consensus 203 vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~------~~~ 276 (412)
T PRK05342 203 VQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKK------EKR 276 (412)
T ss_pred HHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCcccccccc------ccc
Confidence 99999999999999999999888888889999999999999999999999999998888999976532210 111
Q ss_pred hhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHh
Q 005670 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 505 ~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~ 584 (684)
....+++.+.++||++++|+|||++|+|.++.|.+|+++++.+|+..+++.+.++|+++++.+++.+.++++++++|++.
T Consensus 277 ~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~ 356 (412)
T PRK05342 277 TEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKK 356 (412)
T ss_pred hhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence 12678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCC
Q 005670 585 AISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 585 a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~ 633 (684)
+|+..+|||+|+++|++.+.+.|+++|..+ .++.++||++.|.+.
T Consensus 357 ~~~~~~GAR~Lrriie~~l~~~~~~~p~~~----~~~~v~I~~~~v~~~ 401 (412)
T PRK05342 357 AIERKTGARGLRSILEEILLDVMFELPSRE----DVEKVVITKEVVEGK 401 (412)
T ss_pred CCCCCCCCchHHHHHHHHhHHHHHhccccC----CCceEEECHHHhccc
Confidence 999999999999999999999999999754 467899999998755
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=1.2e-48 Score=428.14 Aligned_cols=344 Identities=60% Similarity=0.965 Sum_probs=304.2
Q ss_pred CCCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005670 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGK 343 (684)
..++|.++++.|+++|+||++||+.|..++++||+++....... ....+...+.++||+|||||||
T Consensus 64 ~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~--------------~~~~~~~~~~~iLL~GP~GsGK 129 (413)
T TIGR00382 64 YLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK--------------SDNGVELSKSNILLIGPTGSGK 129 (413)
T ss_pred CCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc--------------cccccccCCceEEEECCCCcCH
Confidence 37899999999999999999999999999999999864321000 0113455568999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcch
Q 005670 344 TLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 344 T~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (684)
|++|+++|+.++.||+.++++.+.+++|+|++.+..+..++..+.+.++.+.++||||||||++++++...+.+.|++++
T Consensus 130 T~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccch
Confidence 99999999999999999999999888999998788888888888888888999999999999999876666678899999
Q ss_pred HHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchh
Q 005670 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~ 503 (684)
++|+.||++|||..+++|..++.+.+....+.++|+|++|||+|+|.++++++..+.....+||....... .
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~--------~ 281 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK--------S 281 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc--------c
Confidence 99999999999999999888888888888899999999999999999999999988877789997542211 1
Q ss_pred hhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHH
Q 005670 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~ 583 (684)
.....+++.+.++|+++++|+|||++|+|.++.|.||+++++.+|+..+++.+.++|+++++.+++.+.++++|+++|++
T Consensus 282 ~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~ 361 (413)
T TIGR00382 282 KEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAK 361 (413)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHH
Confidence 12346677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCC
Q 005670 584 KAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 584 ~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~ 633 (684)
.+|+..+|||+|+++|++.+.+.|+++|..+ .++.++||++.+.+.
T Consensus 362 ~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~~----~~~~v~i~~~~v~~~ 407 (413)
T TIGR00382 362 KALERKTGARGLRSIVEGLLLDVMFDLPSLE----DLEKVVITKETVLKQ 407 (413)
T ss_pred hCCCCCCCchHHHHHHHHhhHHHHhhCCCCC----CCcEEEECHHHHcCc
Confidence 9999999999999999999999999999865 568899999998654
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=3.8e-41 Score=365.53 Aligned_cols=285 Identities=44% Similarity=0.704 Sum_probs=244.1
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005670 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (684)
.+|+++.++|+++|+||++||+.|..++++||+|...... ..-..+|+++||+||||||||+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~------------------~~~e~~p~~ILLiGppG~GKT~ 62 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEE------------------LKDEVTPKNILMIGPTGVGKTE 62 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccc------------------cccccCCceEEEECCCCCCHHH
Confidence 4799999999999999999999999999999997532110 0113345899999999999999
Q ss_pred HHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcc---------------------------------cc---
Q 005670 346 LAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVS---------------------------------DY--- 389 (684)
Q Consensus 346 LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a---------------------------------~~--- 389 (684)
+|+++|+.++.||+.++++.+.+.+|+|.+.+..++.++..+ ..
T Consensus 63 lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~ 142 (441)
T TIGR00390 63 IARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQ 142 (441)
T ss_pred HHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999999878999987777777776554 00
Q ss_pred ------------------------------hH------------------------------------------------
Q 005670 390 ------------------------------NV------------------------------------------------ 391 (684)
Q Consensus 390 ------------------------------~v------------------------------------------------ 391 (684)
.+
T Consensus 143 ~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~ 222 (441)
T TIGR00390 143 TEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKA 222 (441)
T ss_pred cccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHH
Confidence 00
Q ss_pred ---------------------hhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCC
Q 005670 392 ---------------------AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (684)
Q Consensus 392 ---------------------~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~ 450 (684)
..++.||||||||||+..+. .+.+.|+++++||+.||++|||..+.+
T Consensus 223 l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~---------- 290 (441)
T TIGR00390 223 LIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNT---------- 290 (441)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeee----------
Confidence 12578999999999999753 345789999999999999999998875
Q ss_pred CCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccc
Q 005670 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (684)
Q Consensus 451 g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R 530 (684)
+..++||++++|||+|+|.. .+|+| ++|||.+|
T Consensus 291 -k~~~v~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 323 (441)
T TIGR00390 291 -KYGMVKTDHILFIAAGAFQL-----------------------------------------AKPSD-----LIPELQGR 323 (441)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 12479999999999999863 11233 57999999
Q ss_pred cceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHH
Q 005670 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILMD 605 (684)
Q Consensus 531 ~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~-----~~~GAR~Lr~iIe~~l~~ 605 (684)
|++++.|.+|+++++.+||.++.+.+.+||+++|+..|+.+.|+++|++.||+.++. .++|||.|+.++|+++.+
T Consensus 324 ~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d 403 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLED 403 (441)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred HHhcCCCccCCCCccceEEecccccCC
Q 005670 606 AMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 606 al~e~~~~~~~~~~i~~~~id~e~v~~ 632 (684)
.+++.|.. .+..++||++.|..
T Consensus 404 ~~fe~p~~-----~~~~v~I~~~~V~~ 425 (441)
T TIGR00390 404 ISFEAPDL-----SGQNITIDADYVSK 425 (441)
T ss_pred HHhcCCCC-----CCCEEEECHHHHHh
Confidence 99999975 35789999988753
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=8.6e-41 Score=362.99 Aligned_cols=286 Identities=44% Similarity=0.698 Sum_probs=245.4
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005670 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (684)
..+|+++.++|+++|+||++||+.|..++++||+|...... ......+.++||+||||||||
T Consensus 3 ~~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~------------------~~~e~~~~~ILliGp~G~GKT 64 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEE------------------LRDEVTPKNILMIGPTGVGKT 64 (443)
T ss_pred CCCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcc------------------cccccCCceEEEECCCCCCHH
Confidence 36899999999999999999999999999999987422110 112233589999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcc-------------------------------------
Q 005670 345 LLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVS------------------------------------- 387 (684)
Q Consensus 345 ~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a------------------------------------- 387 (684)
++|++||+.++.||+.+|++++.+++|+|.+.+..++.++..+
T Consensus 65 ~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~ 144 (443)
T PRK05201 65 EIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWG 144 (443)
T ss_pred HHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCcc
Confidence 9999999999999999999999988999988778877776655
Q ss_pred ----------------------------------c--c-----h------------------------------------
Q 005670 388 ----------------------------------D--Y-----N------------------------------------ 390 (684)
Q Consensus 388 ----------------------------------~--~-----~------------------------------------ 390 (684)
. + .
T Consensus 145 ~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~ 224 (443)
T PRK05201 145 EEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKI 224 (443)
T ss_pred ccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHH
Confidence 0 0 0
Q ss_pred -------------------Hhh-hcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCC
Q 005670 391 -------------------VAA-AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (684)
Q Consensus 391 -------------------v~~-a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~ 450 (684)
+.. .+.||||||||||+....++ .+.|+++++||+.||++|||..+++
T Consensus 225 l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~---------- 292 (443)
T PRK05201 225 LIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST---------- 292 (443)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee----------
Confidence 122 37899999999999976332 4789999999999999999998875
Q ss_pred CCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccc
Q 005670 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (684)
Q Consensus 451 g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R 530 (684)
+..++||++++|||+|+|.. .+++| ++|||++|
T Consensus 293 -k~~~i~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 325 (443)
T PRK05201 293 -KYGMVKTDHILFIASGAFHV-----------------------------------------SKPSD-----LIPELQGR 325 (443)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 12479999999999999752 11233 57999999
Q ss_pred cceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHH
Q 005670 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILMD 605 (684)
Q Consensus 531 ~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~-----~~~GAR~Lr~iIe~~l~~ 605 (684)
|++++.+.+|+++++.+||.++.+.+.+||+++|+..|+.+.|+++|++.||+.++. .++|||.|+.++|+++.+
T Consensus 326 ~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d 405 (443)
T PRK05201 326 FPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 405 (443)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred HHhcCCCccCCCCccceEEecccccCC
Q 005670 606 AMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 606 al~e~~~~~~~~~~i~~~~id~e~v~~ 632 (684)
.+++.|+. .+..++||++.|..
T Consensus 406 ~~Fe~p~~-----~~~~v~I~~~~V~~ 427 (443)
T PRK05201 406 ISFEAPDM-----SGETVTIDAAYVDE 427 (443)
T ss_pred HhccCCCC-----CCCEEEECHHHHHH
Confidence 99999986 35789999988754
No 7
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=357.47 Aligned_cols=280 Identities=24% Similarity=0.384 Sum_probs=232.8
Q ss_pred CCCCCCCCCCCCCChHH----HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccc
Q 005670 254 GCWGGSNLGNKFPTPKE----ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~pl~~~~~~~~e----l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 329 (684)
..|+|+|+.+....+++ +++.|.+.|+||++|+..|..+|. +.++|..++++|
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIr------------raRaGL~dp~rP----------- 520 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIR------------RARAGLGDPNRP----------- 520 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHH------------HHhcCCCCCCCC-----------
Confidence 46999999977666654 899999999999999999999995 236677788877
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccc-----------ccccccchhHHHHHHHHhcccchHhhhc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLT-----------QARYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l~-----------~s~yvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
..++||.||+|||||.||++||..+. ..++++|||++. +++|||++.+..+++.++..++
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~Py------ 594 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPY------ 594 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCC------
Confidence 47999999999999999999999996 689999999987 5899999999999999998776
Q ss_pred CcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHH
Q 005670 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~ 475 (684)
+||+||||+|.++. +++.||++|| +|.++++.|+ ++|++|++||||+|... +.+
T Consensus 595 -SViLlDEIEKAHpd--------------V~nilLQVlD--------dGrLTD~~Gr--~VdFrNtiIImTSN~Gs-~~i 648 (786)
T COG0542 595 -SVILLDEIEKAHPD--------------VFNLLLQVLD--------DGRLTDGQGR--TVDFRNTIIIMTSNAGS-EEI 648 (786)
T ss_pred -eEEEechhhhcCHH--------------HHHHHHHHhc--------CCeeecCCCC--EEecceeEEEEecccch-HHH
Confidence 79999999999998 9999999999 7788888887 89999999999999542 111
Q ss_pred HHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHH
Q 005670 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~ 555 (684)
... .++ . .....+.....++ +.++..|+|||++|+|.+|.|.+|+.+++.+|+...++.
T Consensus 649 ~~~------~~~--~-------~~~~~~~~~~~v~------~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 649 LRD------ADG--D-------DFADKEALKEAVM------EELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred Hhh------ccc--c-------ccchhhhHHHHHH------HHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 111 110 0 0011122223333 345678999999999999999999999999999987666
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 005670 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 556 L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+.++ +..+++.+.+++++.++|++++|+..+|||+|+++|++.+.+.+++..-.
T Consensus 708 l~~~----L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~ 761 (786)
T COG0542 708 LAKR----LAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILF 761 (786)
T ss_pred HHHH----HHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence 6554 55679999999999999999999999999999999999999998876443
No 8
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=309.86 Aligned_cols=286 Identities=45% Similarity=0.716 Sum_probs=242.5
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005670 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (684)
..+|+++..+|+++||||++||+.+.-+++|.|+|......- .-+..|.|+|+.||+|+|||
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~l------------------r~EV~PKNILMIGpTGVGKT 64 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEEL------------------RDEVTPKNILMIGPTGVGKT 64 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHH------------------hhccCccceEEECCCCCcHH
Confidence 478999999999999999999999999999999975432211 12345699999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhccc------------------------------------
Q 005670 345 LLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSD------------------------------------ 388 (684)
Q Consensus 345 ~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~------------------------------------ 388 (684)
.+||.+|+..+.||+.+.++.+++-+|||.++++.++++...+-
T Consensus 65 EIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g 144 (444)
T COG1220 65 EIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWG 144 (444)
T ss_pred HHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 99999999999999999999999999999999999988876420
Q ss_pred -----------------------------------------------ch-------------------------------
Q 005670 389 -----------------------------------------------YN------------------------------- 390 (684)
Q Consensus 389 -----------------------------------------------~~------------------------------- 390 (684)
+.
T Consensus 145 ~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~ 224 (444)
T COG1220 145 QSENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKK 224 (444)
T ss_pred cCcccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHH
Confidence 00
Q ss_pred --------------------H-hhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCC
Q 005670 391 --------------------V-AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (684)
Q Consensus 391 --------------------v-~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~ 449 (684)
+ ..-+.|||||||||+++...+ .++.|+++++||..||.++||..|.. +
T Consensus 225 ~L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T------K-- 294 (444)
T COG1220 225 LLIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST------K-- 294 (444)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeec------c--
Confidence 0 123579999999999987533 33449999999999999999988762 1
Q ss_pred CCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccc
Q 005670 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (684)
Q Consensus 450 ~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~ 529 (684)
.| .+.+..++||++|+|.- .+|+| ++|||.+
T Consensus 295 yG---~VkTdHILFIasGAFh~-----------------------------------------sKPSD-----LiPELQG 325 (444)
T COG1220 295 YG---PVKTDHILFIASGAFHV-----------------------------------------AKPSD-----LIPELQG 325 (444)
T ss_pred cc---ccccceEEEEecCceec-----------------------------------------CChhh-----cChhhcC
Confidence 12 57888999999999751 12333 5799999
Q ss_pred ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHH
Q 005670 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS-----KNTGARGLRSLLENILM 604 (684)
Q Consensus 530 R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~-----~~~GAR~Lr~iIe~~l~ 604 (684)
||++.|.+.+|+.+++.+|+.++-+.|.+||..+++..|+.+.|+++|++.||+.+|. .+.|||-|..++|+++.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLe 405 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLE 405 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999884 78899999999999999
Q ss_pred HHHhcCCCccCCCCccceEEecccccCC
Q 005670 605 DAMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 605 ~al~e~~~~~~~~~~i~~~~id~e~v~~ 632 (684)
+..++.++... ..+.||.+.|..
T Consensus 406 diSFeA~d~~g-----~~v~Id~~yV~~ 428 (444)
T COG1220 406 DISFEAPDMSG-----QKVTIDAEYVEE 428 (444)
T ss_pred HhCccCCcCCC-----CeEEEcHHHHHH
Confidence 99999998754 567888777654
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-32 Score=316.19 Aligned_cols=275 Identities=21% Similarity=0.312 Sum_probs=214.9
Q ss_pred CCCCCCCCCCCCCCh----HHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccc
Q 005670 254 GCWGGSNLGNKFPTP----KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~pl~~~~~~~----~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 329 (684)
..|+|+|+.....+. ..+++.|.+.|+||++|++.|..++..+. +|...+++|
T Consensus 431 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~------------~gl~~~~kp----------- 487 (758)
T PRK11034 431 ARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSR------------AGLGHEHKP----------- 487 (758)
T ss_pred HHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHh------------ccccCCCCC-----------
Confidence 469999998654444 34889999999999999999999996332 122222333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc-----------ccccccchhHHHHHHHHhcccchHhhhcCcE
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-----------QARYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~-----------~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gI 398 (684)
..++||+||||||||++|+++|+.++.+|+.+||+++. +++|+|++....+...+... +.+|
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~-------p~sV 560 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH-------PHAV 560 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhC-------CCcE
Confidence 46899999999999999999999999999999999875 25788876566666665543 4589
Q ss_pred EEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHh
Q 005670 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 399 LfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~ 478 (684)
|||||||++++. +++.||++|| +|...+..|+ .+|++|++||+|+|.. .+...
T Consensus 561 lllDEieka~~~--------------v~~~LLq~ld--------~G~ltd~~g~--~vd~rn~iiI~TsN~g-~~~~~-- 613 (758)
T PRK11034 561 LLLDEIEKAHPD--------------VFNLLLQVMD--------NGTLTDNNGR--KADFRNVVLVMTTNAG-VRETE-- 613 (758)
T ss_pred EEeccHhhhhHH--------------HHHHHHHHHh--------cCeeecCCCc--eecCCCcEEEEeCCcC-HHHHh--
Confidence 999999999987 9999999998 3333344444 7899999999999843 33322
Q ss_pred ccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHH
Q 005670 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (684)
Q Consensus 479 r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~k 558 (684)
+..+||..... ....+ +.++..|+|||++|||.+|.|.||+.+++.+|+...+..
T Consensus 614 ---~~~~g~~~~~~-------------~~~~~------~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~--- 668 (758)
T PRK11034 614 ---RKSIGLIHQDN-------------STDAM------EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE--- 668 (758)
T ss_pred ---hcccCcccchh-------------hHHHH------HHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH---
Confidence 23466642110 01111 345678999999999999999999999999999875544
Q ss_pred HHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 559 QYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 559 q~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.+++..+|+.+.++++++++|++.+|+..+|||+|+++|++.+.+.+++..
T Consensus 669 -~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 669 -LQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred -HHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4555677899999999999999999999999999999999999999988663
No 10
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=1.6e-30 Score=308.96 Aligned_cols=288 Identities=25% Similarity=0.350 Sum_probs=220.7
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccc
Q 005670 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~pl~~~~~~~~----el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 329 (684)
..|+|+|+.....+.. .+++.|.+.|+||++|++.|..++..... |...+++|
T Consensus 482 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~------------gl~~~~~p----------- 538 (821)
T CHL00095 482 SAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARV------------GLKNPNRP----------- 538 (821)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhh------------cccCCCCC-----------
Confidence 4599999987655543 48999999999999999999999963322 22233333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccc-----------ccccccchhHHHHHHHHhcccchHhhhc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLT-----------QARYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l~-----------~s~yvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
..++||+||||||||++|+++|+.+. .+++++|++++. +++|+|++....+...+...+
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p------- 611 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKP------- 611 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCC-------
Confidence 36789999999999999999999983 579999998874 467899886667776666544
Q ss_pred CcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHH
Q 005670 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~ 475 (684)
.+||+|||||++++. +++.||++|| +|...+..|+ .+|++|++||||+|... +.
T Consensus 612 ~~VvllDeieka~~~--------------v~~~Llq~le--------~g~~~d~~g~--~v~~~~~i~I~Tsn~g~--~~ 665 (821)
T CHL00095 612 YTVVLFDEIEKAHPD--------------IFNLLLQILD--------DGRLTDSKGR--TIDFKNTLIIMTSNLGS--KV 665 (821)
T ss_pred CeEEEECChhhCCHH--------------HHHHHHHHhc--------cCceecCCCc--EEecCceEEEEeCCcch--HH
Confidence 379999999999987 9999999999 4444555554 89999999999999653 22
Q ss_pred HHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHH
Q 005670 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~ 555 (684)
+. .....+||....... + ......+.+.+. +.++..|+|||++|+|.+|.|.||+.+++.+|+...++.
T Consensus 666 i~--~~~~~~gf~~~~~~~------~-~~~~~~~~~~~~--~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 666 IE--TNSGGLGFELSENQL------S-EKQYKRLSNLVN--EELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HH--hhccccCCccccccc------c-cccHHHHHHHHH--HHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 22 112457776432110 0 001112222222 335567999999999999999999999999999987666
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 005670 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 556 L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+.++ +..+++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+++..-
T Consensus 735 l~~r----l~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l 787 (821)
T CHL00095 735 LFKR----LNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVL 787 (821)
T ss_pred HHHH----HHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 6554 4567999999999999999999999999999999999999998887643
No 11
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=1.8e-30 Score=305.24 Aligned_cols=274 Identities=23% Similarity=0.343 Sum_probs=213.6
Q ss_pred CCCCCCCCCCCC----ChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCccccccc
Q 005670 255 CWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (684)
Q Consensus 255 ~~~g~pl~~~~~----~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 330 (684)
.|+|+|+..... ...++++.|++.|+||++|++.|..++... ..+...+++| .
T Consensus 428 ~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~------------~~g~~~~~~p-----------~ 484 (731)
T TIGR02639 428 KMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS------------RAGLGNPNKP-----------V 484 (731)
T ss_pred HHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHH------------hcCCCCCCCC-----------c
Confidence 499999865433 344689999999999999999999988521 1222233333 3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc-----------ccccccchhHHHHHHHHhcccchHhhhcCcEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-----------QARYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~-----------~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gIL 399 (684)
.++||+||||||||++|+++|+.++.+++.+||+++. +++|+|++.+..+.+.++.. +.+||
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~-------p~~Vv 557 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKH-------PHCVL 557 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhC-------CCeEE
Confidence 6799999999999999999999999999999999874 36788988777777766554 44899
Q ss_pred EEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhc
Q 005670 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (684)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r 479 (684)
+|||||++++. +++.||++|| +|...+..|+ .+|++|++||+|+|... +.+
T Consensus 558 llDEieka~~~--------------~~~~Ll~~ld--------~g~~~d~~g~--~vd~~~~iii~Tsn~g~-~~~---- 608 (731)
T TIGR02639 558 LLDEIEKAHPD--------------IYNILLQVMD--------YATLTDNNGR--KADFRNVILIMTSNAGA-SEM---- 608 (731)
T ss_pred EEechhhcCHH--------------HHHHHHHhhc--------cCeeecCCCc--ccCCCCCEEEECCCcch-hhh----
Confidence 99999999887 9999999999 3334444454 78999999999999542 111
Q ss_pred cccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHH
Q 005670 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (684)
Q Consensus 480 ~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq 559 (684)
.+..+||.... ....+ .+.++..|.|||++|||.+|.|.||+.+++.+|++..++.+.
T Consensus 609 -~~~~~~f~~~~-------------~~~~~------~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~-- 666 (731)
T TIGR02639 609 -SKPPIGFGSEN-------------VESKS------DKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELS-- 666 (731)
T ss_pred -hhccCCcchhh-------------hHHHH------HHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHH--
Confidence 12235653211 01111 244567899999999999999999999999999998665554
Q ss_pred HHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 560 YRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 560 ~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.+...++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+++..
T Consensus 667 --~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 667 --KQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred --HHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 34556788999999999999999999999999999999999999987654
No 12
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=2.3e-29 Score=298.87 Aligned_cols=279 Identities=20% Similarity=0.353 Sum_probs=212.9
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccc
Q 005670 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~pl~~~~~~~~----el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 329 (684)
..|+|+|+.+...+.. ++++.|.+.|+||++|++.|..++... ++|...+.+|
T Consensus 539 ~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~------------~~gl~~~~~p----------- 595 (852)
T TIGR03345 539 ADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA------------RAGLEDPRKP----------- 595 (852)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH------------hcCCCCCCCC-----------
Confidence 3599999987555443 489999999999999999999999622 2233333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc-----------ccccccchhHHHHHHHHhcccchHhhhc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QARYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~-----------~s~yvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||+||||||||++|+++|+.+ ...|+.+||+++. +++|+|++.++.+...++.. +
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~-------p 668 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRK-------P 668 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhC-------C
Confidence 3579999999999999999999999 3478999999874 35899988667776666654 4
Q ss_pred CcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHH
Q 005670 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~ 475 (684)
.+||+||||+++++. +++.|+++|+ +|.+.+..|+ .+|++|++||||+|... +.+
T Consensus 669 ~svvllDEieka~~~--------------v~~~Llq~ld--------~g~l~d~~Gr--~vd~~n~iiI~TSNlg~-~~~ 723 (852)
T TIGR03345 669 YSVVLLDEVEKAHPD--------------VLELFYQVFD--------KGVMEDGEGR--EIDFKNTVILLTSNAGS-DLI 723 (852)
T ss_pred CcEEEEechhhcCHH--------------HHHHHHHHhh--------cceeecCCCc--EEeccccEEEEeCCCch-HHH
Confidence 589999999999887 9999999998 4555566665 89999999999999542 222
Q ss_pred HHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHH
Q 005670 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~ 555 (684)
.... .++.. ..+.+. +.+.+. ..++..|+|||++|++ +|.|.||+.+++.+|+...++.
T Consensus 724 ~~~~-----~~~~~---------~~~~~~----~~~~~~--~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 724 MALC-----ADPET---------APDPEA----LLEALR--PELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred HHhc-----cCccc---------CcchHH----HHHHHH--HHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 1100 00000 001111 222221 2355679999999997 8999999999999999998777
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 556 L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.+++.+ ..++.+.++++++++|++.+|+..+|||+|+++|++.+.+.+++..
T Consensus 783 l~~rl~~---~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 783 IARRLKE---NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHH---hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 7666433 2378899999999999999999999999999999999999888653
No 13
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=6.5e-28 Score=287.57 Aligned_cols=275 Identities=23% Similarity=0.366 Sum_probs=209.5
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccc
Q 005670 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~pl~~~~~~~~----el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 329 (684)
..|+|+|+.....+.. .+++.|.+.|+||+.|++.|..++... .++...+++|
T Consensus 538 ~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~------------~~gl~~~~~p----------- 594 (852)
T TIGR03346 538 SRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS------------RAGLSDPNRP----------- 594 (852)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH------------hccCCCCCCC-----------
Confidence 4599999987554443 488899999999999999999999622 1223333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc-----------ccccccchhHHHHHHHHhcccchHhhhc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QARYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~-----------~s~yvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
...+||+||||||||++|+++|+.+ +.+++.+||+++. +++|+|++....+...+...+
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p------- 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKP------- 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCC-------
Confidence 3689999999999999999999998 4589999998764 356888876666666655544
Q ss_pred CcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHH
Q 005670 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~ 475 (684)
.+|||||||+++++. +++.||++|+ +|...+..| ..+|++|++||||+|... +.+
T Consensus 668 ~~vlllDeieka~~~--------------v~~~Ll~~l~--------~g~l~d~~g--~~vd~rn~iiI~TSn~g~-~~~ 722 (852)
T TIGR03346 668 YSVVLFDEVEKAHPD--------------VFNVLLQVLD--------DGRLTDGQG--RTVDFRNTVIIMTSNLGS-QFI 722 (852)
T ss_pred CcEEEEeccccCCHH--------------HHHHHHHHHh--------cCceecCCC--eEEecCCcEEEEeCCcch-HhH
Confidence 379999999999987 9999999998 344445555 489999999999999532 111
Q ss_pred HHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHH
Q 005670 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~ 555 (684)
.... + ..+.+.....++ +.++..|+|||++|||.++.|.|++.+++.+|+...++.
T Consensus 723 ~~~~------~------------~~~~~~~~~~~~------~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 723 QELA------G------------GDDYEEMREAVM------EVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred hhhc------c------------cccHHHHHHHHH------HHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 1100 0 001111111222 234567999999999999999999999999999987666
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 556 L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.++ +...++.+.++++++++|++++|+..+|||+|+++|++.+.+.+++..
T Consensus 779 l~~~----l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 779 LRKR----LAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HHHH----HHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 6544 445678899999999999999999999999999999999999887653
No 14
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=6e-28 Score=287.37 Aligned_cols=275 Identities=24% Similarity=0.405 Sum_probs=208.4
Q ss_pred CCCCCCCCCCCCCChH----HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccc
Q 005670 254 GCWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (684)
Q Consensus 254 ~~~~g~pl~~~~~~~~----el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 329 (684)
..|+|+|+.+...+.. .+++.|.+.|+||+.|++.|..++... .+|..++++|
T Consensus 541 ~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~------------~~gl~~~~~p----------- 597 (857)
T PRK10865 541 ARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS------------RAGLSDPNRP----------- 597 (857)
T ss_pred HHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH------------HhcccCCCCC-----------
Confidence 4699999988665543 489999999999999999999999621 1223333333
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc-----------ccccccchhHHHHHHHHhcccchHhhhc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QARYVGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~-----------~s~yvG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
..++||+||||||||++|++||+.+ +.+|+.++|+++. +++|+|++.+..+...+... +
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~-------p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRR-------P 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhC-------C
Confidence 3579999999999999999999988 3579999998764 24677877556666555443 3
Q ss_pred CcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHH
Q 005670 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (684)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~ 475 (684)
.+||+||||+++++. +++.|+++|+ +|...+..| ..+|++|++||+|+|... + .
T Consensus 671 ~~vLllDEieka~~~--------------v~~~Ll~ile--------~g~l~d~~g--r~vd~rn~iiI~TSN~g~-~-~ 724 (857)
T PRK10865 671 YSVILLDEVEKAHPD--------------VFNILLQVLD--------DGRLTDGQG--RTVDFRNTVVIMTSNLGS-D-L 724 (857)
T ss_pred CCeEEEeehhhCCHH--------------HHHHHHHHHh--------hCceecCCc--eEEeecccEEEEeCCcch-H-H
Confidence 489999999999887 9999999998 344444444 489999999999999642 1 1
Q ss_pred HHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHH
Q 005670 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 476 i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~ 555 (684)
+..+ +|. .........++ +.++..|+|+|++|+|.++.|.|++.+++.+|++..+..
T Consensus 725 ~~~~-----~~~------------~~~~~~~~~~~------~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 725 IQER-----FGE------------LDYAHMKELVL------GVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HHHh-----ccc------------cchHHHHHHHH------HHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 1111 110 01111111121 235567999999999999999999999999999987766
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 556 LGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 556 L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+.+++ ...++.+.++++++++|++++|+..+|||+|+++|++.+.+.+++..
T Consensus 782 l~~rl----~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 782 LYKRL----EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred HHHHH----HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 65543 44577889999999999999999999999999999999999887653
No 15
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.8e-26 Score=265.62 Aligned_cols=288 Identities=23% Similarity=0.325 Sum_probs=221.4
Q ss_pred CCCCCCCCCCCCCCC----ChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccc
Q 005670 252 KDGCWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE 327 (684)
Q Consensus 252 ~~~~~~g~pl~~~~~----~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 327 (684)
....|+|+|+..... ....|++.|.+.|+||++|+..|.++|... +.|...+
T Consensus 533 ~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s------------r~gl~~~------------ 588 (898)
T KOG1051|consen 533 VVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS------------RAGLKDP------------ 588 (898)
T ss_pred hhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh------------hcccCCC------------
Confidence 357799999987654 344599999999999999999999999622 1122222
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccc--------ccccccchhHHHHHHHHhcccchHhhhcC
Q 005670 328 LEKSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLT--------QARYVGEDVESILYKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 328 ~~~~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l~--------~s~yvG~~~~~~l~~l~~~a~~~v~~a~~ 396 (684)
.+...+||.||+|+|||.||+++|..+. -.|+.+|++++. +++|+|++..+.+.+.++..++
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~------- 661 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPY------- 661 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCc-------
Confidence 1248999999999999999999999993 469999999733 5789999988899999988776
Q ss_pred cEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHH
Q 005670 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i 476 (684)
+||+|||||+.++. +++.|+++|| .|+.++.+|+ .||++|+|||||+|... ..+
T Consensus 662 sVVLfdeIEkAh~~--------------v~n~llq~lD--------~GrltDs~Gr--~Vd~kN~I~IMTsn~~~--~~i 715 (898)
T KOG1051|consen 662 SVVLFEEIEKAHPD--------------VLNILLQLLD--------RGRLTDSHGR--EVDFKNAIFIMTSNVGS--SAI 715 (898)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHHh--------cCccccCCCc--EeeccceEEEEecccch--Hhh
Confidence 79999999999987 9999999999 6777888887 89999999999998432 111
Q ss_pred HhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhh----hcCccccccccceEEEccccCHHHHHHHHhch
Q 005670 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIA----YGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 477 ~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~----~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~ 552 (684)
..... ..++-..... ...... ..+....+.++ ..|+|||++|++.++.|.+++.+++.+|+...
T Consensus 716 ~~~~~--~~~~l~~~~~---------~~~~~~-~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~ 783 (898)
T KOG1051|consen 716 ANDAS--LEEKLLDMDE---------KRGSYR-LKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQ 783 (898)
T ss_pred hcccc--cccccccchh---------hhhhhh-hhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhH
Confidence 11110 0111110000 000000 11122235555 78999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 005670 553 KNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 553 l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
..++.++++. .++...+++.+.+.+..+.|+..+|||.|++.|++.+.+.+.....
T Consensus 784 ~~e~~~r~~~----~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l 839 (898)
T KOG1051|consen 784 LTEIEKRLEE----RELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL 839 (898)
T ss_pred HHHHHHHhhh----hHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe
Confidence 7666555443 4567889999999999999999999999999999999999877653
No 16
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.94 E-value=3.8e-26 Score=252.25 Aligned_cols=275 Identities=17% Similarity=0.291 Sum_probs=203.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.|+|.+.+...+.+.+. + .+....+||+.|++||||..+|++|++..
T Consensus 246 ~Iig~S~~m~~~~~~ak----r--------------------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~ 295 (560)
T COG3829 246 DIIGESPAMLRVLELAK----R--------------------------IAKTDSTVLILGESGTGKELFARAIHNLSPRA 295 (560)
T ss_pred hhccCCHHHHHHHHHHH----h--------------------------hcCCCCcEEEecCCCccHHHHHHHHHhcCccc
Confidence 48999999988887774 1 11123899999999999999999999998
Q ss_pred CCCEEEEeccccc----ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 355 NVPFVIADATTLT----QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~i~~s~l~----~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||+.+. ++.++|+..++...+.-...++.++.|++|.||||||..|+.. +|.+||
T Consensus 296 ~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKLL 361 (560)
T COG3829 296 NGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKLL 361 (560)
T ss_pred CCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHHH
Confidence 4699999999765 6899999966655555555788899999999999999999998 999999
Q ss_pred HHHcCc-eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHH
Q 005670 431 KMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 431 ~~LEg~-~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~L 509 (684)
++|+++ +..| +....+.+| +.+|+|+| .+|++++++++||.|++|+.++..
T Consensus 362 RVLQEkei~rv--------G~t~~~~vD---VRIIAATN-~nL~~~i~~G~FReDLYYRLNV~~---------------- 413 (560)
T COG3829 362 RVLQEKEIERV--------GGTKPIPVD---VRIIAATN-RNLEKMIAEGTFREDLYYRLNVIP---------------- 413 (560)
T ss_pred HHHhhceEEec--------CCCCceeeE---EEEEeccC-cCHHHHHhcCcchhhheeeeceee----------------
Confidence 999744 4343 333445666 66666665 789999999887777776665432
Q ss_pred HhhccchhhhhhcCccccccccceEEEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCcccc-ccHHHHHHHHHhcC
Q 005670 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLH-FTENALRLIAKKAI 586 (684)
Q Consensus 510 l~~v~~~dll~~~f~PeLl~R~d~iI~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~l~-~s~eAl~~La~~a~ 586 (684)
|.+|||.+ +|+..++...+..+.++|.+ .+. ++++++..|.+ |
T Consensus 414 -------------------------i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~-------~v~~ls~~a~~~L~~--y 459 (560)
T COG3829 414 -------------------------ITIPPLRERKEDIPLLAEYFLDKFSRRYGR-------NVKGLSPDALALLLR--Y 459 (560)
T ss_pred -------------------------ecCCCcccCcchHHHHHHHHHHHHHHHcCC-------CcccCCHHHHHHHHh--C
Confidence 55555554 67777777655444444432 444 99999999999 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCC-----CCCcceEEcCcchHHHHHHHHHHhhhh
Q 005670 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-----RGCGAKILYGKGALDRYLAQHKRKDLE 661 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~-----~~~~~~i~~~~g~l~~~l~~~~~~~~~ 661 (684)
.|++|+|+|+|+||+++. +.+ +.-+|+.+++.... ...........+.++.+++++|+..|.
T Consensus 460 ~WPGNVRELeNviER~v~--~~~-----------~~~~I~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~~~e~~Ek~~I~ 526 (560)
T COG3829 460 DWPGNVRELENVIERAVN--LVE-----------SDGLIDADDLPAFALEEKEPRPETTKQIEVGSLKEALEEYEKHLIR 526 (560)
T ss_pred CCCchHHHHHHHHHHHHh--ccC-----------CcceeehhhcchhhhcccccCcCcccCcccccHHHHHHHHHHHHHH
Confidence 999999999999999886 111 11225555554211 111111234677899999999999999
Q ss_pred hccccCCCCC
Q 005670 662 TNVAGADGEP 671 (684)
Q Consensus 662 ~~~~~~~~~~ 671 (684)
+.+++.+++.
T Consensus 527 ~aL~~~~gn~ 536 (560)
T COG3829 527 EALERHGGNK 536 (560)
T ss_pred HHHHHhCCCH
Confidence 9999888875
No 17
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.93 E-value=2.3e-25 Score=243.23 Aligned_cols=280 Identities=18% Similarity=0.293 Sum_probs=204.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.|||++.|++.+.+.|. .|+....+|||.|++||||..+||+|++...
T Consensus 224 ~iIG~S~am~~ll~~i~------------------------------~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~ 273 (550)
T COG3604 224 GIIGRSPAMRQLLKEIE------------------------------VVAKSDSTVLIRGETGTGKELVARAIHQLSPRR 273 (550)
T ss_pred cceecCHHHHHHHHHHH------------------------------HHhcCCCeEEEecCCCccHHHHHHHHHhhCccc
Confidence 48999999999998885 1222348999999999999999999999984
Q ss_pred -CCEEEEeccccc----ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 356 -VPFVIADATTLT----QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 356 -~pfv~i~~s~l~----~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
.|||.+||+.+. ++..+|+. .+.++..+....+.++.|.+|.||+|||..|+.. +|.+||
T Consensus 274 ~kPfV~~NCAAlPesLlESELFGHe-KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLL 338 (550)
T COG3604 274 DKPFVKLNCAALPESLLESELFGHE-KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLL 338 (550)
T ss_pred CCCceeeeccccchHHHHHHHhccc-ccccccchhccCcceeecCCCeEechhhccCCHH--------------HHHHHH
Confidence 699999999765 68899998 4556777778888899999999999999999998 999999
Q ss_pred HHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHH
Q 005670 431 KMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 431 ~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~L 509 (684)
++|. |.+-. .+..+.+.|| +.+|+++| .||++++..+.|+.+++|+..+..
T Consensus 339 RvLQegEieR--------vG~~r~ikVD---VRiIAATN-RDL~~~V~~G~FRaDLYyRLsV~P---------------- 390 (550)
T COG3604 339 RVLQEGEIER--------VGGDRTIKVD---VRVIAATN-RDLEEMVRDGEFRADLYYRLSVFP---------------- 390 (550)
T ss_pred HHHhhcceee--------cCCCceeEEE---EEEEeccc-hhHHHHHHcCcchhhhhhcccccc----------------
Confidence 9997 44433 3566678888 55666665 899999998877766666554432
Q ss_pred HhhccchhhhhhcCccccccccceEEEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCc-cccccHHHHHHHHHhcC
Q 005670 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGV-KLHFTENALRLIAKKAI 586 (684)
Q Consensus 510 l~~v~~~dll~~~f~PeLl~R~d~iI~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi-~l~~s~eAl~~La~~a~ 586 (684)
+.+|||.+ +|+..++..++.++.++ .|. .+.++++|++.|.+ |
T Consensus 391 -------------------------l~lPPLRER~~DIplLA~~Fle~~~~~-------~gr~~l~ls~~Al~~L~~--y 436 (550)
T COG3604 391 -------------------------LELPPLRERPEDIPLLAGYFLEKFRRR-------LGRAILSLSAEALELLSS--Y 436 (550)
T ss_pred -------------------------cCCCCcccCCccHHHHHHHHHHHHHHh-------cCCcccccCHHHHHHHHc--C
Confidence 44555554 55666665544333333 254 78899999999999 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccC-----CCC---CC-CcceEEcCcchHHHHHHHHHH
Q 005670 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVG-----SED---RG-CGAKILYGKGALDRYLAQHKR 657 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~-----~~~---~~-~~~~i~~~~g~l~~~l~~~~~ 657 (684)
.|++|+|+|+++|++++.-+ ....... ++ +... .... ... +. .........-.+.....+.++
T Consensus 437 ~wPGNVRELen~veRavlla-~~~~~~~----d~--~~l~-~~~~~~~~~~~~~~~p~~~~~~~~p~~~~l~~~~~~~eR 508 (550)
T COG3604 437 EWPGNVRELENVVERAVLLA-GRLTRRG----DL--CTLE-LSLSALLWKTLPAPEPSALPEPALPGEHTLREATEEFER 508 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHh-cccCCCc----ce--eehh-hhhhccccccCCCCCccccCCccCCCcccchhhhHHHHH
Confidence 99999999999999999877 4444432 11 1211 2211 111 10 001111123367788889999
Q ss_pred hhhhhccccCCCCCC
Q 005670 658 KDLETNVAGADGEPE 672 (684)
Q Consensus 658 ~~~~~~~~~~~~~~~ 672 (684)
+-|...++.++|+..
T Consensus 509 ~~I~~aL~~~~~~~a 523 (550)
T COG3604 509 QLIIAALEETNGNWA 523 (550)
T ss_pred HHHHHHHHHhCCcHH
Confidence 999999999888754
No 18
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-24 Score=238.73 Aligned_cols=285 Identities=18% Similarity=0.283 Sum_probs=198.4
Q ss_pred hccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 276 DKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 276 ~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
...++|+..+++.|.+.+. + ++....+||++|++||||.++|++|++...
T Consensus 140 ~~~liG~S~am~~l~~~i~----k--------------------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~ 189 (464)
T COG2204 140 GGELVGESPAMQQLRRLIA----K--------------------------VAPSDASVLITGESGTGKELVARAIHQASP 189 (464)
T ss_pred cCCceecCHHHHHHHHHHH----H--------------------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCc
Confidence 3458999999999998885 1 112237999999999999999999999984
Q ss_pred ---CCEEEEeccccc----ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHH
Q 005670 356 ---VPFVIADATTLT----QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 356 ---~pfv~i~~s~l~----~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~ 428 (684)
.||+.+||..+. ++.++|++. ..++.......+.++.+++|+||||||..|+.. +|.+
T Consensus 190 R~~~PFVavNcaAip~~l~ESELFGhek-GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~k 254 (464)
T COG2204 190 RAKGPFIAVNCAAIPENLLESELFGHEK-GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQVK 254 (464)
T ss_pred ccCCCceeeecccCCHHHHHHHhhcccc-cCcCCcccccCcceeEcCCceEEeeccccCCHH--------------HHHH
Confidence 599999999766 577889884 445555556667889999999999999999988 9999
Q ss_pred HHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHH
Q 005670 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~ 508 (684)
||++|+...+. +.+..+.+.+| +.||+++| .||++.+++++|+.+++|
T Consensus 255 LLRvLqe~~~~-------rvG~~~~i~vd---vRiIaaT~-~dL~~~v~~G~FReDLyy--------------------- 302 (464)
T COG2204 255 LLRVLQEREFE-------RVGGNKPIKVD---VRIIAATN-RDLEEEVAAGRFREDLYY--------------------- 302 (464)
T ss_pred HHHHHHcCeeE-------ecCCCccccee---eEEEeecC-cCHHHHHHcCCcHHHHHh---------------------
Confidence 99999743332 22344455666 56666665 789999988866555554
Q ss_pred HHhhccchhhhhhcCccccccccceE-EEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhc
Q 005670 509 LMETVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 509 Ll~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a 585 (684)
|+.++ |.++||.+ ||+..++.+++.++.+++.. -...++++|++.|..
T Consensus 303 ---------------------RLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~------~~~~~s~~a~~~L~~-- 353 (464)
T COG2204 303 ---------------------RLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR------PPKGFSPEALAALLA-- 353 (464)
T ss_pred ---------------------hhccceecCCcccccchhHHHHHHHHHHHHHHHcCC------CCCCCCHHHHHHHHh--
Confidence 44443 66677765 77888887755555444321 146799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCCCCCcceEEcCcchHHHHHHHHHHhhhhhccc
Q 005670 586 ISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKDLETNVA 665 (684)
Q Consensus 586 ~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~~~~~~~i~~~~g~l~~~l~~~~~~~~~~~~~ 665 (684)
|+|++|+|+|+|++++.+.-.-.+..+.. .+.............. ..+...... ..+...+.++|++.|..+++
T Consensus 354 y~WPGNVREL~N~ver~~il~~~~~i~~~----~l~~~~~~~~~~~~~~-~~~~~~~~~-~~l~~~~~~~Er~~I~~aL~ 427 (464)
T COG2204 354 YDWPGNVRELENVVERAVILSEGPEIEVE----DLPLEILAPAAEALAG-PAGEAALPG-LPLGEALAEVERQLILQALE 427 (464)
T ss_pred CCCChHHHHHHHHHHHHHhcCCccccchh----hccccccccccccccc-ccccccccc-ccHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998864422211111 0000000000000000 000000001 45889999999999999999
Q ss_pred cCCCCCC
Q 005670 666 GADGEPE 672 (684)
Q Consensus 666 ~~~~~~~ 672 (684)
.++|+..
T Consensus 428 ~~~g~~~ 434 (464)
T COG2204 428 RTGGNKS 434 (464)
T ss_pred HhCCCHH
Confidence 9988753
No 19
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-23 Score=233.78 Aligned_cols=254 Identities=22% Similarity=0.319 Sum_probs=200.0
Q ss_pred CCCCCCCCCCCCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEE
Q 005670 255 CWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNIL 334 (684)
Q Consensus 255 ~~~g~pl~~~~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vL 334 (684)
+|... .....+.+..++.|++...|.+++|+++.+.+.-.-.. .. +...-++
T Consensus 303 PW~~~--sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~--~~------------------------~kGpILc 354 (782)
T COG0466 303 PWGKR--SKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT--KK------------------------LKGPILC 354 (782)
T ss_pred CCccc--cchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh--cc------------------------CCCcEEE
Confidence 46443 23456777899999999999999999999988421110 00 0015788
Q ss_pred EEccCCCcHHHHHHHHHHHhCCCEEEEeccccc--------ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccc
Q 005670 335 LMGPTGSGKTLLAKTLARYVNVPFVIADATTLT--------QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 335 L~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~--------~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 406 (684)
|+||||+|||+|++.||+.++++|++++...+. .-.|+|..+++.++.+-+... .+.+++|||||+
T Consensus 355 LVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~------~NPv~LLDEIDK 428 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV------KNPVFLLDEIDK 428 (782)
T ss_pred EECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCC------cCCeEEeechhh
Confidence 999999999999999999999999999876554 246999988888888766543 568999999999
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCC
Q 005670 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lg 486 (684)
|..+ ..+| -.++||++|| |+++..+.+++-.+.+|.++++||+|+|.-+
T Consensus 429 m~ss-----~rGD-----PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~--------------- 477 (782)
T COG0466 429 MGSS-----FRGD-----PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLD--------------- 477 (782)
T ss_pred ccCC-----CCCC-----hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccc---------------
Confidence 9764 2223 6789999999 8899999999988999999999999999321
Q ss_pred CCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHh
Q 005670 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~ 566 (684)
.++++|++|+. +|.+..++++|..+|++.+ |..+..+....
T Consensus 478 -----------------------------------tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~---LiPk~~~~~gL 518 (782)
T COG0466 478 -----------------------------------TIPAPLLDRME-VIRLSGYTEDEKLEIAKRH---LIPKQLKEHGL 518 (782)
T ss_pred -----------------------------------cCChHHhccee-eeeecCCChHHHHHHHHHh---cchHHHHHcCC
Confidence 14566777776 8999999999999999875 33333222222
Q ss_pred cCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 005670 567 NGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 567 ~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
..-.+.|+++|+..|.++ |++..|+|+|++.|..++..+..++...
T Consensus 519 ~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~~~ 564 (782)
T COG0466 519 KKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKILLK 564 (782)
T ss_pred CccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 333689999999999998 9999999999999999999988887653
No 20
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.90 E-value=6.6e-23 Score=216.32 Aligned_cols=238 Identities=19% Similarity=0.252 Sum_probs=171.0
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhh-hhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005670 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 265 ~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGK 343 (684)
....+++.++|++.++|++++|+.|.+.+... +.+... ..|... ..+..++||+|||||||
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~------~~g~~~------------~~~~~~vll~G~pGTGK 71 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQ------RLGLAS------------AAPTLHMSFTGNPGTGK 71 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH------HhCCCc------------CCCCceEEEEcCCCCCH
Confidence 44567789999988999999999999877532 111111 111111 11236899999999999
Q ss_pred HHHHHHHHHHhC-------CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccC
Q 005670 344 TLLAKTLARYVN-------VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 344 T~LAraLA~~l~-------~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~ 416 (684)
|++|+++|+.+. .+|+.+++.++. ..|+|.. +..+..+++. +.++||||||++.+.+.+.
T Consensus 72 T~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~-~~~~g~~-~~~~~~~~~~-------a~~gvL~iDEi~~L~~~~~---- 138 (284)
T TIGR02880 72 TTVALRMAQILHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEILKR-------AMGGVLFIDEAYYLYRPDN---- 138 (284)
T ss_pred HHHHHHHHHHHHHcCCcccceEEEecHHHHh-Hhhcccc-hHHHHHHHHH-------ccCcEEEEechhhhccCCC----
Confidence 999999999873 379999998887 4788876 3445555554 3568999999999864311
Q ss_pred CCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccc
Q 005670 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~ 496 (684)
....+..+++.|++.|+.. ..++++|++++...++.+.
T Consensus 139 -~~~~~~~~~~~Ll~~le~~---------------------~~~~~vI~a~~~~~~~~~~-------------------- 176 (284)
T TIGR02880 139 -ERDYGQEAIEILLQVMENQ---------------------RDDLVVILAGYKDRMDSFF-------------------- 176 (284)
T ss_pred -ccchHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH--------------------
Confidence 1122345889999999821 1357788887632222111
Q ss_pred cCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH
Q 005670 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 497 ~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e 576 (684)
.+.|+|.+||+..|.|++|+.+|+.+|+...+... ...++++
T Consensus 177 -------------------------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~-------------~~~l~~~ 218 (284)
T TIGR02880 177 -------------------------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ-------------QYRFSAE 218 (284)
T ss_pred -------------------------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh-------------ccccCHH
Confidence 24699999999999999999999999988743332 3457888
Q ss_pred HHHHHHHh-----cCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 005670 577 ALRLIAKK-----AISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 577 Al~~La~~-----a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+++.++++ ..+|.+|+|+|++++++++..+..++...
T Consensus 219 a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 219 AEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888774 22788899999999999999988777544
No 21
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.9e-23 Score=230.57 Aligned_cols=256 Identities=24% Similarity=0.357 Sum_probs=203.0
Q ss_pred CCCCCCCCCCCCCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceE
Q 005670 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (684)
Q Consensus 254 ~~~~g~pl~~~~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 333 (684)
-+|+.... +..+....++.|++...|.+++|+++.+.+.-...+ .. ....-+
T Consensus 390 LPWgk~S~--En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr--gs------------------------~qGkIl 441 (906)
T KOG2004|consen 390 LPWGKSST--ENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR--GS------------------------VQGKIL 441 (906)
T ss_pred CCCCCCCh--hhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc--cc------------------------CCCcEE
Confidence 34655433 345566788999999999999999999988522111 00 011578
Q ss_pred EEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc--------ccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccc
Q 005670 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT--------QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 334 LL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~--------~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 405 (684)
+|+||||+|||++|+.||+.+|+.|++++...+. ...|+|..++++++.+-.-.. .+.+++|||||
T Consensus 442 Cf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t------~NPliLiDEvD 515 (906)
T KOG2004|consen 442 CFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT------ENPLILIDEVD 515 (906)
T ss_pred EEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC------CCceEEeehhh
Confidence 8999999999999999999999999999876555 246999998888887755432 56899999999
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCC
Q 005670 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~l 485 (684)
++... ..+| -.++||++|| |+++..+.+++-.+++|.+.++||||+|..+
T Consensus 516 KlG~g-----~qGD-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~id-------------- 565 (906)
T KOG2004|consen 516 KLGSG-----HQGD-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVID-------------- 565 (906)
T ss_pred hhCCC-----CCCC-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccc--------------
Confidence 99742 2334 6789999999 8899999999999999999999999999432
Q ss_pred CCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
.++|+|++|+. +|.+..|..+|..+|++.+ |..+..+...
T Consensus 566 ------------------------------------tIP~pLlDRME-vIelsGYv~eEKv~IA~~y---Lip~a~~~~g 605 (906)
T KOG2004|consen 566 ------------------------------------TIPPPLLDRME-VIELSGYVAEEKVKIAERY---LIPQALKDCG 605 (906)
T ss_pred ------------------------------------cCChhhhhhhh-eeeccCccHHHHHHHHHHh---hhhHHHHHcC
Confidence 25678888887 8999999999999999875 5555444333
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVR 614 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~ 614 (684)
...-.+.++++|+..|.++ |+...|+|.|++-|+.++..+..++.+..
T Consensus 606 l~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 606 LKPEQVKISDDALLALIER-YCREAGVRNLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred CCHHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334688999999999998 99999999999999999999887775543
No 22
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.3e-23 Score=232.14 Aligned_cols=221 Identities=24% Similarity=0.337 Sum_probs=175.3
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
+.|-|++++|+.|.++|.++.+......+- | -.||++||||||||||||++||++|++++.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~----G---------------i~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARF----G---------------ISPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHh----c---------------CCCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 347789999999999998766643332221 0 123589999999999999999999999999
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.+.+.++. ++|+|++ ++.++++|+.++. +.++||||||||.+..+|+... + .-.++++++||..|||-
T Consensus 495 nFlsvkgpEL~-sk~vGeS-Er~ir~iF~kAR~----~aP~IiFfDEiDsi~~~R~g~~-~--~v~~RVlsqLLtEmDG~ 565 (693)
T KOG0730|consen 495 NFLSVKGPELF-SKYVGES-ERAIREVFRKARQ----VAPCIIFFDEIDALAGSRGGSS-S--GVTDRVLSQLLTEMDGL 565 (693)
T ss_pred CeeeccCHHHH-HHhcCch-HHHHHHHHHHHhh----cCCeEEehhhHHhHhhccCCCc-c--chHHHHHHHHHHHcccc
Confidence 99999999999 8999998 8999999999875 5789999999999999987322 2 33556999999999963
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
. ..+++++|+++|..++
T Consensus 566 e-------------------~~k~V~ViAATNRpd~-------------------------------------------- 582 (693)
T KOG0730|consen 566 E-------------------ALKNVLVIAATNRPDM-------------------------------------------- 582 (693)
T ss_pred c-------------------ccCcEEEEeccCChhh--------------------------------------------
Confidence 2 2357999999985431
Q ss_pred hhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH-HHHHHHHhcCCCCCCHH
Q 005670 517 DLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGAR 593 (684)
Q Consensus 517 dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e-Al~~La~~a~~~~~GAR 593 (684)
+.|+++ +|||.+|.+++++.+...+|++... + ++.++++ .++.|++. +..+..+
T Consensus 583 ------ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~--------k-------kmp~~~~vdl~~La~~--T~g~SGA 639 (693)
T KOG0730|consen 583 ------IDPALLRPGRLDRIIYVPLPDLEARLEILKQCA--------K-------KMPFSEDVDLEELAQA--TEGYSGA 639 (693)
T ss_pred ------cCHHHcCCcccceeEeecCccHHHHHHHHHHHH--------h-------cCCCCccccHHHHHHH--hccCChH
Confidence 234444 5999999999999999999987521 1 4456655 67888884 6677778
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 005670 594 GLRSLLENILMDAMYEIP 611 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~~ 611 (684)
+|..+++++...++.+..
T Consensus 640 el~~lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 640 EIVAVCQEAALLALRESI 657 (693)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999987644
No 23
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.5e-23 Score=217.26 Aligned_cols=220 Identities=24% Similarity=0.346 Sum_probs=164.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|-|.++.++.|.++|..+.+....... ..+ .||.+||||||||||||+||||+|+..++.
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~------------------~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEE------------------LGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHH------------------cCC-CCCCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 4899999999999999876654221111 001 235899999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+++.+++|+ .+|+|++ .++++++|..|.. ..++||||||||.+..+|...+.++|.+ ||..|+++|.
T Consensus 213 FIrvvgSElV-qKYiGEG-aRlVRelF~lAre----kaPsIIFiDEIDAIg~kR~d~~t~gDrE---VQRTmleLL~--- 280 (406)
T COG1222 213 FIRVVGSELV-QKYIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIGAKRFDSGTSGDRE---VQRTMLELLN--- 280 (406)
T ss_pred EEEeccHHHH-HHHhccc-hHHHHHHHHHHhh----cCCeEEEEechhhhhcccccCCCCchHH---HHHHHHHHHH---
Confidence 9999999999 6999999 8999999998875 5899999999999999988766665544 7777777764
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
+-.-++..+ |+-+||++|..|+
T Consensus 281 -----qlDGFD~~~--------nvKVI~ATNR~D~--------------------------------------------- 302 (406)
T COG1222 281 -----QLDGFDPRG--------NVKVIMATNRPDI--------------------------------------------- 302 (406)
T ss_pred -----hccCCCCCC--------CeEEEEecCCccc---------------------------------------------
Confidence 111134333 5889999995541
Q ss_pred hhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccH-HHHHHHHHhcCCCCCCHHH
Q 005670 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 ll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~-eAl~~La~~a~~~~~GAR~ 594 (684)
+.|+|+ +|||..|.|+.++++...+|++.+...+ .+++ --++.|++. ..+...-+
T Consensus 303 -----LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM---------------~l~~dvd~e~la~~--~~g~sGAd 360 (406)
T COG1222 303 -----LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM---------------NLADDVDLELLARL--TEGFSGAD 360 (406)
T ss_pred -----cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc---------------cCccCcCHHHHHHh--cCCCchHH
Confidence 223333 8999999999999999999998643332 2222 234666774 45555568
Q ss_pred HHHHHHHHHHHHHh
Q 005670 595 LRSLLENILMDAMY 608 (684)
Q Consensus 595 Lr~iIe~~l~~al~ 608 (684)
|+.++..+=..++-
T Consensus 361 lkaictEAGm~AiR 374 (406)
T COG1222 361 LKAICTEAGMFAIR 374 (406)
T ss_pred HHHHHHHHhHHHHH
Confidence 88888766555543
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.90 E-value=2.6e-23 Score=211.41 Aligned_cols=216 Identities=29% Similarity=0.442 Sum_probs=161.8
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhh-ccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNES-SQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
+.||||++||+...-.+. |.+ .-. -+.| .|.+|||+||||||||++|+++|++.+
T Consensus 121 ddViGqEeAK~kcrli~~--yLe--nPe~Fg~W--------------------APknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 121 DDVIGQEEAKRKCRLIME--YLE--NPERFGDW--------------------APKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred hhhhchHHHHHHHHHHHH--Hhh--ChHHhccc--------------------CcceeEEECCCCccHHHHHHHHhcccC
Confidence 358999999987665442 111 000 0122 258999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.||+.+.++++. ..|+|.. ..++++++..+. ++.+||+||||+|.+..+|.-...-+|++. +.|+||..|||
T Consensus 177 vp~l~vkat~li-GehVGdg-ar~Ihely~rA~----~~aPcivFiDE~DAiaLdRryQelRGDVsE--iVNALLTelDg 248 (368)
T COG1223 177 VPLLLVKATELI-GEHVGDG-ARRIHELYERAR----KAAPCIVFIDELDAIALDRRYQELRGDVSE--IVNALLTELDG 248 (368)
T ss_pred CceEEechHHHH-HHHhhhH-HHHHHHHHHHHH----hcCCeEEEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhccC
Confidence 999999999998 6899988 788999998876 468999999999999998776655556554 89999999996
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ....++.|+++|..+|
T Consensus 249 i~-------------------eneGVvtIaaTN~p~~------------------------------------------- 266 (368)
T COG1223 249 IK-------------------ENEGVVTIAATNRPEL------------------------------------------- 266 (368)
T ss_pred cc-------------------cCCceEEEeecCChhh-------------------------------------------
Confidence 32 1123888999985432
Q ss_pred hhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHH
Q 005670 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 516 ~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~L 595 (684)
+.|.+++||..-|.|.-++.++..+|++..+..+ .+.++.. +++++++ +.++..|.+
T Consensus 267 -------LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~-------------Plpv~~~-~~~~~~~--t~g~SgRdi 323 (368)
T COG1223 267 -------LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF-------------PLPVDAD-LRYLAAK--TKGMSGRDI 323 (368)
T ss_pred -------cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC-------------CCccccC-HHHHHHH--hCCCCchhH
Confidence 4578889999999999999999999987633222 4444444 6777875 566766776
Q ss_pred H-HHHHHHHHHHHhc
Q 005670 596 R-SLLENILMDAMYE 609 (684)
Q Consensus 596 r-~iIe~~l~~al~e 609 (684)
+ +++...+..++.+
T Consensus 324 kekvlK~aLh~Ai~e 338 (368)
T COG1223 324 KEKVLKTALHRAIAE 338 (368)
T ss_pred HHHHHHHHHHHHHHh
Confidence 4 4555555555544
No 25
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=1.9e-22 Score=213.22 Aligned_cols=238 Identities=20% Similarity=0.247 Sum_probs=166.1
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhh-hhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005670 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 265 ~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGK 343 (684)
.....++.+.|++.++|++.+|++|.+.+... +.+... ..|...+. +..++||+|||||||
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~------~~g~~~~~------------~~~~ill~G~pGtGK 72 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRK------NLGLTSSN------------PGLHMSFTGSPGTGK 72 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH------HcCCCCCC------------CCceEEEECCCCCCH
Confidence 34456799999998999999999999887431 111111 11221111 126899999999999
Q ss_pred HHHHHHHHHHhC-------CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccC
Q 005670 344 TLLAKTLARYVN-------VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 344 T~LAraLA~~l~-------~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~ 416 (684)
|++|+++|+.+. .+++.++++++. ..|+|+. +..+..+++.+ .++||||||+|.+...+.
T Consensus 73 T~lAr~la~~~~~~g~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~---- 139 (287)
T CHL00181 73 TTVALKMADILYKLGYIKKGHLLTVTRDDLV-GQYIGHT-APKTKEVLKKA-------MGGVLFIDEAYYLYKPDN---- 139 (287)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEecHHHHH-HHHhccc-hHHHHHHHHHc-------cCCEEEEEccchhccCCC----
Confidence 999999999872 368999988887 6788876 34455555543 458999999999864321
Q ss_pred CCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccc
Q 005670 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~ 496 (684)
....+..+++.|++.||.. ..++++|++++...|+.+.
T Consensus 140 -~~~~~~e~~~~L~~~me~~---------------------~~~~~vI~ag~~~~~~~~~-------------------- 177 (287)
T CHL00181 140 -ERDYGSEAIEILLQVMENQ---------------------RDDLVVIFAGYKDRMDKFY-------------------- 177 (287)
T ss_pred -ccchHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH--------------------
Confidence 1123345899999999821 1357888887633322221
Q ss_pred cCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH
Q 005670 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 497 ~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e 576 (684)
...|+|.+||+.+|.|++++.+++.+|+...+... ...++++
T Consensus 178 -------------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~-------------~~~l~~~ 219 (287)
T CHL00181 178 -------------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ-------------QYQLTPE 219 (287)
T ss_pred -------------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh-------------cCCCChh
Confidence 13589999999999999999999999988743332 3445666
Q ss_pred HHHHHHH----hcCCCCCC-HHHHHHHHHHHHHHHHhcCCCc
Q 005670 577 ALRLIAK----KAISKNTG-ARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 577 Al~~La~----~a~~~~~G-AR~Lr~iIe~~l~~al~e~~~~ 613 (684)
+.+.+.. ..+...+| +|.+++++++++.....++...
T Consensus 220 ~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 220 AEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 5544444 34444445 9999999999999988777654
No 26
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.89 E-value=4.5e-22 Score=235.63 Aligned_cols=242 Identities=23% Similarity=0.330 Sum_probs=178.2
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005670 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (684)
..+.+.+++.|++.++||+++|+.+.+.+..+..+ . . ....++||+||||||||
T Consensus 308 ~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~---~---~--------------------~~~~~lll~GppG~GKT 361 (775)
T TIGR00763 308 NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR---G---K--------------------MKGPILCLVGPPGVGKT 361 (775)
T ss_pred hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---c---C--------------------CCCceEEEECCCCCCHH
Confidence 44566789999999999999999999877532111 0 0 01147999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeccccc--------ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccC
Q 005670 345 LLAKTLARYVNVPFVIADATTLT--------QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 345 ~LAraLA~~l~~pfv~i~~s~l~--------~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~ 416 (684)
++|+++|+.++.+|+.+++..+. ...|+|...+. +.+.+..+. ..+.||||||||++.+..
T Consensus 362 ~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~-i~~~l~~~~-----~~~~villDEidk~~~~~----- 430 (775)
T TIGR00763 362 SLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR-IIQGLKKAK-----TKNPLFLLDEIDKIGSSF----- 430 (775)
T ss_pred HHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCch-HHHHHHHhC-----cCCCEEEEechhhcCCcc-----
Confidence 99999999999999999876543 24677776444 334444332 234699999999998631
Q ss_pred CCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccc
Q 005670 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~ 496 (684)
.+| ..++||++||. .+...+....-...+|.++++||+|+|..+
T Consensus 431 ~~~-----~~~aLl~~ld~------~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~------------------------- 474 (775)
T TIGR00763 431 RGD-----PASALLEVLDP------EQNNAFSDHYLDVPFDLSKVIFIATANSID------------------------- 474 (775)
T ss_pred CCC-----HHHHHHHhcCH------HhcCccccccCCceeccCCEEEEEecCCch-------------------------
Confidence 112 57889999982 222222233333578899999999998321
Q ss_pred cCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCc---cccc
Q 005670 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV---KLHF 573 (684)
Q Consensus 497 ~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi---~l~~ 573 (684)
.++|+|++|+. +|.|++++.+++.+|++.++ ..+. +...++ .+.+
T Consensus 475 -------------------------~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l---~~~~---~~~~~l~~~~~~~ 522 (775)
T TIGR00763 475 -------------------------TIPRPLLDRME-VIELSGYTEEEKLEIAKKYL---IPKA---LEDHGLKPDELKI 522 (775)
T ss_pred -------------------------hCCHHHhCCee-EEecCCCCHHHHHHHHHHHH---HHHH---HHHcCCCcceEEE
Confidence 36789999996 78999999999999998753 2222 222343 5789
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
+++++.+|++ .|+...|+|+|++.|++++...+.++..
T Consensus 523 ~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 523 TDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred CHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 5999999999999999999998877653
No 27
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=6.9e-22 Score=205.67 Aligned_cols=230 Identities=17% Similarity=0.320 Sum_probs=162.4
Q ss_pred HHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHH
Q 005670 272 CKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 272 ~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA 351 (684)
.++|++ ++|++.+|+.|.+.+.+.-.... +...|...++. ..++||+||||||||++|+++|
T Consensus 2 ~~~l~~-~~Gl~~vk~~i~~~~~~~~~~~~-----~~~~g~~~~~~------------~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 2 ERELSR-MVGLDEVKALIKEIYAWIQINEK-----RKEEGLKTSKQ------------VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred hHHHHH-hcChHHHHHHHHHHHHHHHHHHH-----HHHcCCCCCCC------------cceEEEEcCCCCCHHHHHHHHH
Confidence 356666 69999999999988753211100 00111111111 2689999999999999999999
Q ss_pred HHh-------CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchH
Q 005670 352 RYV-------NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 352 ~~l-------~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (684)
+.+ ..+++.++++++. +.|+|.. ...+.+++..+ .++||||||+|.+... +....+..
T Consensus 64 ~~l~~~~~~~~~~~v~~~~~~l~-~~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~------~~~~~~~~ 128 (261)
T TIGR02881 64 KLFKEMNVLSKGHLIEVERADLV-GEYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG------GEKDFGKE 128 (261)
T ss_pred HHHHhcCcccCCceEEecHHHhh-hhhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC------CccchHHH
Confidence 986 2478889999887 6788876 56666776654 4589999999999642 11222345
Q ss_pred HHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhh
Q 005670 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~ 504 (684)
+++.|++.||.. ..++++|++++..+++.+.
T Consensus 129 ~i~~Ll~~~e~~---------------------~~~~~vila~~~~~~~~~~---------------------------- 159 (261)
T TIGR02881 129 AIDTLVKGMEDN---------------------RNEFVLILAGYSDEMDYFL---------------------------- 159 (261)
T ss_pred HHHHHHHHHhcc---------------------CCCEEEEecCCcchhHHHH----------------------------
Confidence 788999999821 1246777777643322111
Q ss_pred hhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHh
Q 005670 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 505 ~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~ 584 (684)
.+.|+|.+||+..|.|++++.+++.+|++..+.. ..+.++++++++|++.
T Consensus 160 -----------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-------------~~~~l~~~a~~~l~~~ 209 (261)
T TIGR02881 160 -----------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-------------REYKLTEEAKWKLREH 209 (261)
T ss_pred -----------------hcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-------------cCCccCHHHHHHHHHH
Confidence 2458899999999999999999999998763321 1567999999998664
Q ss_pred -------cCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 005670 585 -------AISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 585 -------a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
.-...+++|.++++++.++.++..++...
T Consensus 210 ~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 210 LYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 12345679999999999999998776544
No 28
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.88 E-value=1e-21 Score=231.67 Aligned_cols=266 Identities=17% Similarity=0.275 Sum_probs=192.3
Q ss_pred CCCCCCCCCCCCCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceE
Q 005670 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (684)
Q Consensus 254 ~~~~g~pl~~~~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 333 (684)
-+|.... ....+..+.++.|++.++|++++|+++.+.+...... .. .....+
T Consensus 301 ~pw~~~~--~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~------~~--------------------~~g~~i 352 (784)
T PRK10787 301 VPWNARS--KVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV------NK--------------------IKGPIL 352 (784)
T ss_pred CCCCCCC--cccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc------cc--------------------CCCceE
Confidence 3464432 3446778899999999999999999999877521110 00 011579
Q ss_pred EEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc--------cccccchhHHHHHHHHhcccchHhhhcCcEEEEeccc
Q 005670 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 334 LL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~--------s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 405 (684)
+|+||||+|||++++.+|+.++.+|++++++.... ..|+|...+..++.+ ..+. ..+.||+|||||
T Consensus 353 ~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l-~~~~-----~~~~villDEid 426 (784)
T PRK10787 353 CLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKM-AKVG-----VKNPLFLLDEID 426 (784)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHH-HhcC-----CCCCEEEEEChh
Confidence 99999999999999999999999999998776431 246666545444433 3222 245799999999
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCC
Q 005670 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~l 485 (684)
++.+.. .+| .+++|+++|| |++...+.++.-.+.+|.++++||+|+|..
T Consensus 427 k~~~~~-----~g~-----~~~aLlevld------~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--------------- 475 (784)
T PRK10787 427 KMSSDM-----RGD-----PASALLEVLD------PEQNVAFSDHYLEVDYDLSDVMFVATSNSM--------------- 475 (784)
T ss_pred hccccc-----CCC-----HHHHHHHHhc------cccEEEEecccccccccCCceEEEEcCCCC---------------
Confidence 997641 112 6899999998 223333344444467899999999998721
Q ss_pred CCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
.++|+|++|+. +|.|.+|+++++.+|++.++ ..+..+...
T Consensus 476 ------------------------------------~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L---~~k~~~~~~ 515 (784)
T PRK10787 476 ------------------------------------NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHL---LPKQIERNA 515 (784)
T ss_pred ------------------------------------CCCHHHhccee-eeecCCCCHHHHHHHHHHhh---hHHHHHHhC
Confidence 25789999996 89999999999999999865 222222223
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccc
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEA 629 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~ 629 (684)
..+..+.++++++++|++ +|+..+|||.|++.|++++...+.+....+ .+..+.|+.+.
T Consensus 516 l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~----~~~~v~v~~~~ 574 (784)
T PRK10787 516 LKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLDK----SLKHIEINGDN 574 (784)
T ss_pred CCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhcC----CCceeeecHHH
Confidence 445578999999999998 799999999999999999999988764332 23445555543
No 29
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.7e-22 Score=226.73 Aligned_cols=249 Identities=27% Similarity=0.297 Sum_probs=178.6
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
++|-|.+++|..+.+.|..+.++.......- .++++||||||||||||++|||+|.++..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssgl--------------------rkRSGILLYGPPGTGKTLlAKAVATEcsL 731 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGL--------------------RKRSGILLYGPPGTGKTLLAKAVATECSL 731 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccc--------------------cccceeEEECCCCCchHHHHHHHHhhcee
Confidence 3589999999999999987665432221111 11379999999999999999999999999
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
.|+++.+.++. .+|+|++ ++.+|+.|++|+. +.|||||+||+|.+.+.|+..+.++.++++ +.++||..|||-
T Consensus 732 ~FlSVKGPELL-NMYVGqS-E~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELDgl 804 (953)
T KOG0736|consen 732 NFLSVKGPELL-NMYVGQS-EENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELDGL 804 (953)
T ss_pred eEEeecCHHHH-HHHhcch-HHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhhcc
Confidence 99999999998 7999999 8999999999874 799999999999999999998888888876 788899999951
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
. + -+.+.+.+|.++|..||-
T Consensus 805 s----------~-------~~s~~VFViGATNRPDLL------------------------------------------- 824 (953)
T KOG0736|consen 805 S----------D-------SSSQDVFVIGATNRPDLL------------------------------------------- 824 (953)
T ss_pred c----------C-------CCCCceEEEecCCCcccc-------------------------------------------
Confidence 1 0 034457777777755420
Q ss_pred hhhhhcCccccccccceEEEccccCHHH-HHHHHhchHHHHHHHHHHHHHhcCccccccHH-HHHHHHHhcCCCCCCHHH
Q 005670 517 DLIAYGLIPEFVGRFPVLVSLLALTENQ-LVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGARG 594 (684)
Q Consensus 517 dll~~~f~PeLl~R~d~iI~f~pLseee-l~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e-Al~~La~~a~~~~~GAR~ 594 (684)
...-++| +|||..+.+.+-..++ ..+|++ ++-++ +.++++ -+..||++ +..++..-.
T Consensus 825 --DpALLRP---GRFDKLvyvG~~~d~esk~~vL~----AlTrk-----------FkLdedVdL~eiAk~-cp~~~TGAD 883 (953)
T KOG0736|consen 825 --DPALLRP---GRFDKLVYVGPNEDAESKLRVLE----ALTRK-----------FKLDEDVDLVEIAKK-CPPNMTGAD 883 (953)
T ss_pred --ChhhcCC---CccceeEEecCCccHHHHHHHHH----HHHHH-----------ccCCCCcCHHHHHhh-CCcCCchhH
Confidence 0001334 8999888887776544 445543 23332 333332 25677887 566666568
Q ss_pred HHHHHHHHHHHHHhcCCCccC------CCCccceEEecccccCCC
Q 005670 595 LRSLLENILMDAMYEIPDVRA------GDEVIDAVVVDEEAVGSE 633 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~~~~~------~~~~i~~~~id~e~v~~~ 633 (684)
|=.++-.++..++.+....-+ ..++-..+.|..+++...
T Consensus 884 lYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks 928 (953)
T KOG0736|consen 884 LYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKS 928 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHH
Confidence 888888888888765533211 123345566666665443
No 30
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.5e-22 Score=216.87 Aligned_cols=231 Identities=23% Similarity=0.314 Sum_probs=168.0
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHH-hhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005670 266 PTPKEICKGLDKFVIGQERAKKVLSVAVY-NHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 266 ~~~~el~~~L~~~VvGQe~ak~~L~~aV~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (684)
.+|.+....--++|.|.|+||..|.+.|. ..-...+... +.+. |.+|||+||||||||
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrL---------GGKL------------PKGVLLvGPPGTGKT 351 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRL---------GGKL------------PKGVLLVGPPGTGKT 351 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhc---------cCcC------------CCceEEeCCCCCchh
Confidence 44444444444568999999999999984 0000111111 1122 389999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchH
Q 005670 345 LLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 345 ~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (684)
+||||+|.+.++||+...++++. ..|||.. .+.++++|..+.. ..||||||||||.+..+|...... .-.+
T Consensus 352 lLARAvAGEA~VPFF~~sGSEFd-Em~VGvG-ArRVRdLF~aAk~----~APcIIFIDEiDavG~kR~~~~~~---y~kq 422 (752)
T KOG0734|consen 352 LLARAVAGEAGVPFFYASGSEFD-EMFVGVG-ARRVRDLFAAAKA----RAPCIIFIDEIDAVGGKRNPSDQH---YAKQ 422 (752)
T ss_pred HHHHHhhcccCCCeEeccccchh-hhhhccc-HHHHHHHHHHHHh----cCCeEEEEechhhhcccCCccHHH---HHHH
Confidence 99999999999999999999998 5999999 8899999998764 589999999999998876543222 2345
Q ss_pred HHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCccc-HHHHHHhccccCCCCCCcccccccccCCCchh
Q 005670 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~d-Le~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~ 503 (684)
.+|+||-.|||...+ ..+|||.++|+.+ |++.
T Consensus 423 TlNQLLvEmDGF~qN-------------------eGiIvigATNfpe~LD~A---------------------------- 455 (752)
T KOG0734|consen 423 TLNQLLVEMDGFKQN-------------------EGIIVIGATNFPEALDKA---------------------------- 455 (752)
T ss_pred HHHHHHHHhcCcCcC-------------------CceEEEeccCChhhhhHH----------------------------
Confidence 889999999985432 1389999999764 2221
Q ss_pred hhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHH-HHHHH
Q 005670 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIA 582 (684)
Q Consensus 504 ~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eA-l~~La 582 (684)
-.+| +|||..|.++.++..-..+|+..++.. +.+++++ ...||
T Consensus 456 ------------------L~RP---GRFD~~v~Vp~PDv~GR~eIL~~yl~k---------------i~~~~~VD~~iiA 499 (752)
T KOG0734|consen 456 ------------------LTRP---GRFDRHVTVPLPDVRGRTEILKLYLSK---------------IPLDEDVDPKIIA 499 (752)
T ss_pred ------------------hcCC---CccceeEecCCCCcccHHHHHHHHHhc---------------CCcccCCCHhHhc
Confidence 2345 899999999999999999998764322 2233222 23344
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 583 KKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 583 ~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
+ -+.++..-+|.|+|..+...+..+..
T Consensus 500 R--GT~GFsGAdLaNlVNqAAlkAa~dga 526 (752)
T KOG0734|consen 500 R--GTPGFSGADLANLVNQAALKAAVDGA 526 (752)
T ss_pred c--CCCCCchHHHHHHHHHHHHHHHhcCc
Confidence 4 35666667999999998888776654
No 31
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.87 E-value=1.9e-22 Score=197.97 Aligned_cols=166 Identities=40% Similarity=0.597 Sum_probs=124.5
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCC----CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~----pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 404 (684)
|..++||+||+|||||.+|+++|+.+.. +++.+||+++.+ +.+....+..++..+++.+...+.+|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 3589999999999999999999999985 999999999984 33334556667777777777778889999999
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCC
Q 005670 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
||+++. .+.+.|++++.+|+.||++||+..+. +..+ ..+|++|++||||+|+.+.+.....+..
T Consensus 78 dKa~~~---~~~~~~v~~~~V~~~LL~~le~g~~~--------d~~g--~~vd~~n~ifI~Tsn~~~~~~~~~~~~~--- 141 (171)
T PF07724_consen 78 DKAHPS---NSGGADVSGEGVQNSLLQLLEGGTLT--------DSYG--RTVDTSNIIFIMTSNFGAEEIIDASRSG--- 141 (171)
T ss_dssp GGCSHT---TTTCSHHHHHHHHHHHHHHHHHSEEE--------ETTC--CEEEGTTEEEEEEESSSTHHHHHCHHHC---
T ss_pred hhcccc---ccccchhhHHHHHHHHHHHhccccee--------cccc--eEEEeCCceEEEecccccchhhhhhccc---
Confidence 999985 44577888889999999999944432 3444 4899999999999999876544422211
Q ss_pred CCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceE
Q 005670 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL 534 (684)
Q Consensus 485 lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~i 534 (684)
............++++++|+|||++|||.|
T Consensus 142 --------------------~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 --------------------EAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp --------------------TCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred --------------------cccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 001111122235788899999999999964
No 32
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-21 Score=207.77 Aligned_cols=220 Identities=21% Similarity=0.323 Sum_probs=165.9
Q ss_pred cccChHHHHHHHHHHHHhhh--hhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|.|.++||+.|.++|..+. ...+++.+++| .+||++||||||||+||+|+|.+++
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW----------------------kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW----------------------KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhccccc----------------------ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 48899999999999998654 46788888887 7999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..|+.++.+.++ ++|.|++ +++++-+|..++. ..|++|||||||.|+..|+.. +..+..+++.+.||..|||
T Consensus 271 tTFFNVSsstlt-SKwRGeS-EKlvRlLFemARf----yAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 271 TTFFNVSSSTLT-SKWRGES-EKLVRLLFEMARF----YAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDG 342 (491)
T ss_pred CeEEEechhhhh-hhhccch-HHHHHHHHHHHHH----hCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhc
Confidence 999999999999 8999998 9999999998875 589999999999999987754 3344456799999999996
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEec-cCcc-cHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICG-GAFV-DIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~t-gn~~-dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v 513 (684)
-.- ..+.+.++||++ +|+. |++
T Consensus 343 ~~~----------------t~e~~k~VmVLAATN~PWdiD---------------------------------------- 366 (491)
T KOG0738|consen 343 VQG----------------TLENSKVVMVLAATNFPWDID---------------------------------------- 366 (491)
T ss_pred ccc----------------ccccceeEEEEeccCCCcchH----------------------------------------
Confidence 221 122344555554 4543 222
Q ss_pred cchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 514 ~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
..|+.||.-.|.++-++.+....+++.. +. . ...-++-.++.|++. ..++..-
T Consensus 367 -----------EAlrRRlEKRIyIPLP~~~~R~~Li~~~-----------l~--~-~~~~~~~~~~~lae~--~eGySGa 419 (491)
T KOG0738|consen 367 -----------EALRRRLEKRIYIPLPDAEARSALIKIL-----------LR--S-VELDDPVNLEDLAER--SEGYSGA 419 (491)
T ss_pred -----------HHHHHHHhhheeeeCCCHHHHHHHHHHh-----------hc--c-ccCCCCccHHHHHHH--hcCCChH
Confidence 3345555556666667777766666541 10 1 222345556778885 4666667
Q ss_pred HHHHHHHHHHHHHHhcC
Q 005670 594 GLRSLLENILMDAMYEI 610 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~ 610 (684)
.+.+++..+-+++|-+.
T Consensus 420 DI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 420 DITNVCREASMMAMRRK 436 (491)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888888744
No 33
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.3e-21 Score=213.57 Aligned_cols=224 Identities=24% Similarity=0.308 Sum_probs=168.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|-|+++++.+|..+|.++.++.....+ .|. ..|.+||||||||||||+||+|+|++.+..
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~----lGi---------------~~PsGvLL~GPPGCGKTLlAKAVANEag~N 572 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKA----LGI---------------DAPSGVLLCGPPGCGKTLLAKAVANEAGAN 572 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHH----hCC---------------CCCCceEEeCCCCccHHHHHHHHhhhccCc
Confidence 4789999999999999877765433221 111 125899999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+.+.+|. .+|||++ +..++.+|.+++. ..|||||+||||.|.+.|+..+ ...+.++.|+||..|||-.
T Consensus 573 FisVKGPELl-NkYVGES-ErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733|consen 573 FISVKGPELL-NKYVGES-ERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred eEeecCHHHH-HHHhhhH-HHHHHHHHHHhhc----CCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccc
Confidence 9999999999 7999998 8999999999875 5899999999999999887644 4445679999999999621
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
+-+++.+|.++|..|+- +
T Consensus 644 -------------------~R~gV~viaATNRPDiI---------------------------------D---------- 661 (802)
T KOG0733|consen 644 -------------------ERRGVYVIAATNRPDII---------------------------------D---------- 661 (802)
T ss_pred -------------------cccceEEEeecCCCccc---------------------------------c----------
Confidence 23457888888855420 0
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc-HHHHHHHHHhcCCCCCCHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s-~eAl~~La~~a~~~~~GAR~Lr 596 (684)
...++| +|||.++.+..++.+|...|++.. .+ +.+..++ +--++.|+......++..-.|-
T Consensus 662 --pAiLRP---GRlDk~LyV~lPn~~eR~~ILK~~----tk---------n~k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 662 --PAILRP---GRLDKLLYVGLPNAEERVAILKTI----TK---------NTKPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred --hhhcCC---CccCceeeecCCCHHHHHHHHHHH----hc---------cCCCCCCcccCHHHHhhcccccCCchhhHH
Confidence 011345 899999999999999999998752 11 1123333 3346777776555566667888
Q ss_pred HHHHHHHHHHHhc
Q 005670 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
.+++..-..++.+
T Consensus 724 aLvreAsi~AL~~ 736 (802)
T KOG0733|consen 724 ALVREASILALRE 736 (802)
T ss_pred HHHHHHHHHHHHH
Confidence 8888776655543
No 34
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.2e-21 Score=218.31 Aligned_cols=221 Identities=25% Similarity=0.301 Sum_probs=164.1
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
+|.|.++||+.|.+.|. ..+ ..+.... +..|+++||+||||||||+||+|+|.+.+
T Consensus 312 DVAG~deAK~El~E~V~-fLKNP~~Y~~lG---------------------AKiPkGvLL~GPPGTGKTLLAKAiAGEAg 369 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVK-FLKNPEQYQELG---------------------AKIPKGVLLVGPPGTGKTLLAKAIAGEAG 369 (774)
T ss_pred cccCcHHHHHHHHHHHH-HhcCHHHHHHcC---------------------CcCcCceEEECCCCCcHHHHHHHHhcccC
Confidence 48999999999999984 111 1111111 12358999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccc-cccCCCCCcchHHHHHHHHHHc
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE-SLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~-~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+||+.++++++. ..++|.. .+.++++|..++. ..|+||||||||.+...|+ ...++...+++..+|+||..||
T Consensus 370 VPF~svSGSEFv-E~~~g~~-asrvr~lf~~ar~----~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 370 VPFFSVSGSEFV-EMFVGVG-ASRVRDLFPLARK----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred CceeeechHHHH-HHhcccc-hHHHHHHHHHhhc----cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 999999999999 5888887 7899999998875 4899999999999999884 3345677788889999999999
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
|... .+.+||++++|..|.
T Consensus 444 gf~~-------------------~~~vi~~a~tnr~d~------------------------------------------ 462 (774)
T KOG0731|consen 444 GFET-------------------SKGVIVLAATNRPDI------------------------------------------ 462 (774)
T ss_pred CCcC-------------------CCcEEEEeccCCccc------------------------------------------
Confidence 7432 245899999885541
Q ss_pred chhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHH
Q 005670 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 515 ~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~ 594 (684)
|...-++| +|||..|.+..++.....+|++.++.. +.+..++..+..|+.+ +.++-.-.
T Consensus 463 ---ld~allrp---GRfdr~i~i~~p~~~~r~~i~~~h~~~-------------~~~~~e~~dl~~~a~~--t~gf~gad 521 (774)
T KOG0731|consen 463 ---LDPALLRP---GRFDRQIQIDLPDVKGRASILKVHLRK-------------KKLDDEDVDLSKLASL--TPGFSGAD 521 (774)
T ss_pred ---cCHHhcCC---CccccceeccCCchhhhHHHHHHHhhc-------------cCCCcchhhHHHHHhc--CCCCcHHH
Confidence 00011234 899999999999999999998764322 2443444555556663 44444457
Q ss_pred HHHHHHHHHHHHHh
Q 005670 595 LRSLLENILMDAMY 608 (684)
Q Consensus 595 Lr~iIe~~l~~al~ 608 (684)
|.+++...-..+..
T Consensus 522 l~n~~neaa~~a~r 535 (774)
T KOG0731|consen 522 LANLCNEAALLAAR 535 (774)
T ss_pred HHhhhhHHHHHHHH
Confidence 88877766555544
No 35
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=2.6e-20 Score=188.55 Aligned_cols=198 Identities=26% Similarity=0.402 Sum_probs=126.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
++||++++..+...+.....| . .+..++|||||||+|||+||+.||++++.+|
T Consensus 26 fiGQ~~l~~~l~i~i~aa~~r-------~--------------------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 26 FIGQEHLKGNLKILIRAAKKR-------G--------------------EALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp S-S-HHHHHHHHHHHHHHHCT-------T--------------------S---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred ccCcHHHHhhhHHHHHHHHhc-------C--------------------CCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 699999999988776422111 0 0136999999999999999999999999999
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCcee
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
...++..+... .. +..++... ..+.||||||||++.+. +|+.|+..||+..+
T Consensus 79 ~~~sg~~i~k~-------~d-l~~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~LlpamEd~~i 130 (233)
T PF05496_consen 79 KITSGPAIEKA-------GD-LAAILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAMEDGKI 130 (233)
T ss_dssp EEEECCC--SC-------HH-HHHHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHHHCSEE
T ss_pred EeccchhhhhH-------HH-HHHHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHhccCeE
Confidence 98887655421 11 22222221 24579999999999988 99999999995554
Q ss_pred ec-cCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 439 NV-PEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 439 ~I-p~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
.+ -.+| ...+.+.++...+.+|.+++..+
T Consensus 131 diiiG~g----~~ar~~~~~l~~FTligATTr~g---------------------------------------------- 160 (233)
T PF05496_consen 131 DIIIGKG----PNARSIRINLPPFTLIGATTRAG---------------------------------------------- 160 (233)
T ss_dssp EEEBSSS----SS-BEEEEE----EEEEEESSGC----------------------------------------------
T ss_pred EEEeccc----cccceeeccCCCceEeeeecccc----------------------------------------------
Confidence 32 1222 34567889999999998877322
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.++|++||.++..+..|+.+|+.+|+.+... -..+.+++++..+|+.++ .+..|-..+
T Consensus 161 ----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~-------------~l~i~i~~~~~~~Ia~rs---rGtPRiAnr 220 (233)
T PF05496_consen 161 ----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR-------------ILNIEIDEDAAEEIARRS---RGTPRIANR 220 (233)
T ss_dssp ----CTSHCCCTTSSEEEE----THHHHHHHHHHCCH-------------CTT-EE-HHHHHHHHHCT---TTSHHHHHH
T ss_pred ----ccchhHHhhcceecchhcCCHHHHHHHHHHHHH-------------HhCCCcCHHHHHHHHHhc---CCChHHHHH
Confidence 256889999999999999999999999976322 237889999999999963 333454444
Q ss_pred HHHH
Q 005670 598 LLEN 601 (684)
Q Consensus 598 iIe~ 601 (684)
++++
T Consensus 221 ll~r 224 (233)
T PF05496_consen 221 LLRR 224 (233)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 36
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.83 E-value=3e-20 Score=199.95 Aligned_cols=284 Identities=17% Similarity=0.222 Sum_probs=180.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--- 355 (684)
++|++.+++.+.+.+... . ....+|||+|++||||+++|++|+....
T Consensus 1 liG~S~~m~~~~~~~~~~----a--------------------------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~ 50 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL----A--------------------------PLDRPVLIIGERGTGKELIAARLHYLSKRWQ 50 (329)
T ss_pred CCcCCHHHHHHHHHHHHH----h--------------------------CCCCCEEEECCCCChHHHHHHHHHHhcCccC
Confidence 478888888888777511 1 1127899999999999999999998874
Q ss_pred CCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHH
Q 005670 356 VPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.||+.+||+.+.+ +..+|+..+ .+........+.++.+.+|+||||||+.|+.. +|..|+.
T Consensus 51 ~pfv~vnc~~~~~~~l~~~lfG~~~g-~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~ 115 (329)
T TIGR02974 51 GPLVKLNCAALSENLLDSELFGHEAG-AFTGAQKRHQGRFERADGGTLFLDELATASLL--------------VQEKLLR 115 (329)
T ss_pred CCeEEEeCCCCChHHHHHHHhccccc-cccCcccccCCchhhCCCCEEEeCChHhCCHH--------------HHHHHHH
Confidence 6999999997752 222333211 11111112345577788999999999999987 9999999
Q ss_pred HHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHh
Q 005670 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~ 511 (684)
+|+...+. ..+..+. -..++.+|++++ .++++.+.++
T Consensus 116 ~l~~~~~~-------~~g~~~~---~~~~~RiI~at~-~~l~~~~~~g-------------------------------- 152 (329)
T TIGR02974 116 VIEYGEFE-------RVGGSQT---LQVDVRLVCATN-ADLPALAAEG-------------------------------- 152 (329)
T ss_pred HHHcCcEE-------ecCCCce---eccceEEEEech-hhHHHHhhcC--------------------------------
Confidence 99833221 1111111 123577787776 3444443322
Q ss_pred hccchhhhhhcCccccccccce-EEEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCcc--ccccHHHHHHHHHhcC
Q 005670 512 TVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVK--LHFTENALRLIAKKAI 586 (684)
Q Consensus 512 ~v~~~dll~~~f~PeLl~R~d~-iI~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~--l~~s~eAl~~La~~a~ 586 (684)
.|+++|+.|+.. .|.++||.+ +|+..+++..+..+.+++ +.. ..++++|++.|.. |
T Consensus 153 ----------~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-------~~~~~~~ls~~a~~~L~~--y 213 (329)
T TIGR02974 153 ----------RFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL-------GLPLFPGFTPQAREQLLE--Y 213 (329)
T ss_pred ----------chHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHh-------CCCCCCCcCHHHHHHHHh--C
Confidence 477889999954 699999995 888888877555443332 333 5799999999999 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecc----cccCCCCC-----CCcceE----EcCcchHHHHHH
Q 005670 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDE----EAVGSEDR-----GCGAKI----LYGKGALDRYLA 653 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~----e~v~~~~~-----~~~~~i----~~~~g~l~~~l~ 653 (684)
+|++|+|+|+++|++++..+-.+.....+- .+..+ ... ..+....+ ...... ......++..+.
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 290 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRHGLEEAPIDEI--IIDPF-ASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAQQ 290 (329)
T ss_pred CCCchHHHHHHHHHHHHHhCCCCccchhhc--ccccc-ccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 899999999999999887542111100000 00000 000 00000000 000000 000135777889
Q ss_pred HHHHhhhhhccccCCCCCC
Q 005670 654 QHKRKDLETNVAGADGEPE 672 (684)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~ 672 (684)
++|+..|...++.++|+..
T Consensus 291 ~~E~~~I~~aL~~~~gn~~ 309 (329)
T TIGR02974 291 DYEIELLQQALAEAQFNQR 309 (329)
T ss_pred HHHHHHHHHHHHHhCCCHH
Confidence 9999999999999998863
No 37
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.83 E-value=7e-20 Score=207.82 Aligned_cols=280 Identities=16% Similarity=0.209 Sum_probs=183.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|++.+++.+.+.+... .....+|||+|++||||+++|++|+...
T Consensus 188 ~iig~s~~~~~~~~~i~~~------------------------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~ 237 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVV------------------------------AASDLNVLILGETGVGKELVARAIHAASPRA 237 (509)
T ss_pred ceeecCHHHHHHHHHHHHH------------------------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcC
Confidence 4788888888888877511 1123799999999999999999999986
Q ss_pred CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 355 NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ +.++|+..+ .+........+.++.+.+|+||||||+.++.. +|.+|+
T Consensus 238 ~~p~v~v~c~~~~~~~~e~~lfG~~~g-~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll 302 (509)
T PRK05022 238 DKPLVYLNCAALPESLAESELFGHVKG-AFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLL 302 (509)
T ss_pred CCCeEEEEcccCChHHHHHHhcCcccc-ccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHH
Confidence 46999999998752 223333211 11111112234567788999999999999987 999999
Q ss_pred HHHcCcee-eccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHH
Q 005670 431 KMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 431 ~~LEg~~v-~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~L 509 (684)
++|+...+ .+ +..+.+. .++.+|++++ .++++.+..+
T Consensus 303 ~~l~~~~~~~~--------g~~~~~~---~~~RiI~~t~-~~l~~~~~~~------------------------------ 340 (509)
T PRK05022 303 RVLQYGEIQRV--------GSDRSLR---VDVRVIAATN-RDLREEVRAG------------------------------ 340 (509)
T ss_pred HHHhcCCEeeC--------CCCccee---cceEEEEecC-CCHHHHHHcC------------------------------
Confidence 99973322 21 1111222 2467777766 3455444332
Q ss_pred HhhccchhhhhhcCccccccccceE-EEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcC
Q 005670 510 METVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 510 l~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~ 586 (684)
.|+++|++|+..+ |.+|||.+ +|+..+++..+..+.+++. ...+.+++++++.|.. |
T Consensus 341 ------------~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~------~~~~~~s~~a~~~L~~--y 400 (509)
T PRK05022 341 ------------RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLG------LRSLRLSPAAQAALLA--Y 400 (509)
T ss_pred ------------CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcC------CCCCCCCHHHHHHHHh--C
Confidence 3778888888755 99999987 7888877765444433221 1246899999999999 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCC----CCCcceEE---cCcchHHHHHHHHHHhh
Q 005670 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED----RGCGAKIL---YGKGALDRYLAQHKRKD 659 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~----~~~~~~i~---~~~g~l~~~l~~~~~~~ 659 (684)
+|++|.|+|+++|++++..+.....+. ...|+.+++.... ........ .....+...+++.|++.
T Consensus 401 ~WPGNvrEL~~~i~ra~~~~~~~~~~~--------~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~ 472 (509)
T PRK05022 401 DWPGNVRELEHVISRAALLARARGAGR--------IVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQL 472 (509)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCccCc--------cceecHHHcCcccccccCccccccccccccccCHHHHHHHHHHHH
Confidence 999999999999999887653321110 1122222221110 00000000 11235667788999999
Q ss_pred hhhccccCCCCCC
Q 005670 660 LETNVAGADGEPE 672 (684)
Q Consensus 660 ~~~~~~~~~~~~~ 672 (684)
|.+.++.++|+..
T Consensus 473 I~~aL~~~~gn~~ 485 (509)
T PRK05022 473 IRQALAQHQGNWA 485 (509)
T ss_pred HHHHHHHcCCCHH
Confidence 9999999999864
No 38
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.9e-20 Score=190.46 Aligned_cols=127 Identities=27% Similarity=0.477 Sum_probs=108.3
Q ss_pred cccChHHHHHHHHHHHHhhh--hhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|.|.+.||++|.++|..+. .+++.+.+.+| +++||+|||||||++||+++|.+.+
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw----------------------rgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW----------------------RGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcc----------------------eeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999997654 46677776666 7999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..|++++.++|+ ++|.|++ ++++..+|+.++. ..++||||||||.++..|+. +.....+++...||-.|+|
T Consensus 192 STFFSvSSSDLv-SKWmGES-EkLVknLFemARe----~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 192 STFFSVSSSDLV-SKWMGES-EKLVKNLFEMARE----NKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQG 262 (439)
T ss_pred CceEEeehHHHH-HHHhccH-HHHHHHHHHHHHh----cCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhc
Confidence 999999999999 8999998 8999999998875 58999999999999887543 2233445678888888884
No 39
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.81 E-value=3.3e-19 Score=191.68 Aligned_cols=284 Identities=16% Similarity=0.232 Sum_probs=178.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.++|.+.+.+.+.+.+...- ....+|||+|++||||+++|++|+....
T Consensus 7 ~liG~S~~~~~~~~~i~~~a------------------------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~ 56 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA------------------------------PLDKPVLIIGERGTGKELIASRLHYLSSRW 56 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh------------------------------CCCCCEEEECCCCCcHHHHHHHHHHhCCcc
Confidence 47999999999888885211 1127899999999999999999998774
Q ss_pred -CCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 356 -VPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 356 -~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
.||+.+||..+.+ ..++|...+. +........+.++.+.+|+||||||+.++.. +|..|+
T Consensus 57 ~~pfv~v~c~~~~~~~~~~~lfg~~~~~-~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~Q~~L~ 121 (326)
T PRK11608 57 QGPFISLNCAALNENLLDSELFGHEAGA-FTGAQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLL 121 (326)
T ss_pred CCCeEEEeCCCCCHHHHHHHHccccccc-cCCcccccCCchhccCCCeEEeCChhhCCHH--------------HHHHHH
Confidence 6999999998752 2233332110 0000111234466778899999999999987 999999
Q ss_pred HHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHH
Q 005670 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll 510 (684)
.+++...+. ..+....+. .++.+|++++ .++++.+.++
T Consensus 122 ~~l~~~~~~-------~~g~~~~~~---~~~RiI~~s~-~~l~~l~~~g------------------------------- 159 (326)
T PRK11608 122 RVIEYGELE-------RVGGSQPLQ---VNVRLVCATN-ADLPAMVAEG------------------------------- 159 (326)
T ss_pred HHHhcCcEE-------eCCCCceee---ccEEEEEeCc-hhHHHHHHcC-------------------------------
Confidence 999732221 011111112 2467777765 3444443322
Q ss_pred hhccchhhhhhcCccccccccc-eEEEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCcc--ccccHHHHHHHHHhc
Q 005670 511 ETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVK--LHFTENALRLIAKKA 585 (684)
Q Consensus 511 ~~v~~~dll~~~f~PeLl~R~d-~iI~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~--l~~s~eAl~~La~~a 585 (684)
.|+++|+.||. ..|.++||.+ +|+..++...+..+.+++ +.. ..+++++++.|..
T Consensus 160 -----------~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-------~~~~~~~~s~~al~~L~~-- 219 (326)
T PRK11608 160 -----------KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL-------GLPLFPGFTERARETLLN-- 219 (326)
T ss_pred -----------CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHh-------CCCCCCCCCHHHHHHHHh--
Confidence 37788999994 4699999987 788888877554443332 323 4699999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccC-CCCCCCcceEEcCcchHHHHHHHHHHhhhhhcc
Q 005670 586 ISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVG-SEDRGCGAKILYGKGALDRYLAQHKRKDLETNV 664 (684)
Q Consensus 586 ~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~-~~~~~~~~~i~~~~g~l~~~l~~~~~~~~~~~~ 664 (684)
|+|++|.|+|+++|++++..+-........ -.+........... ......... .....+..++++.|+..|.+.+
T Consensus 220 y~WPGNvrEL~~vl~~a~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~Er~~I~~aL 295 (326)
T PRK11608 220 YRWPGNIRELKNVVERSVYRHGTSEYPLDN--IIIDPFKRRPAEEAIAVSETTSLP--TLPLDLREWQHQQEKELLQRSL 295 (326)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCCCchhh--cccccccccccccccccccccccc--cccccHHHHHHHHHHHHHHHHH
Confidence 789999999999999988743211110000 00000000000000 000000000 0012477778899999999999
Q ss_pred ccCCCCCC
Q 005670 665 AGADGEPE 672 (684)
Q Consensus 665 ~~~~~~~~ 672 (684)
+.++|+..
T Consensus 296 ~~~~gn~~ 303 (326)
T PRK11608 296 QQAKFNQK 303 (326)
T ss_pred HHhCCCHH
Confidence 99988753
No 40
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.81 E-value=3.5e-19 Score=202.10 Aligned_cols=274 Identities=16% Similarity=0.255 Sum_probs=176.7
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---~ 355 (684)
++|++.+++.+.+.+...- ....+|||+|++||||+++|++|++.. +
T Consensus 214 iiG~S~~m~~~~~~i~~~A------------------------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~ 263 (526)
T TIGR02329 214 LLGASAPMEQVRALVRLYA------------------------------RSDATVLILGESGTGKELVAQAIHQLSGRRD 263 (526)
T ss_pred eeeCCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCC
Confidence 7999999988888874110 112799999999999999999999876 4
Q ss_pred CCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHH
Q 005670 356 VPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.||+.+||..+.+ +.++|+..+......-....+.++.+.+|+||||||+.|+.. +|..|++
T Consensus 264 ~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~~Ll~ 329 (526)
T TIGR02329 264 FPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQTRLLR 329 (526)
T ss_pred CCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHH--------------HHHHHHH
Confidence 6999999998752 344554422211111112345667788999999999999988 9999999
Q ss_pred HHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHh
Q 005670 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~ 511 (684)
+|+...+. +.+..+.+.+ ++.+|++++ .++++.+.++
T Consensus 330 ~L~~~~~~-------r~g~~~~~~~---dvRiIaat~-~~l~~~v~~g-------------------------------- 366 (526)
T TIGR02329 330 VLEEREVV-------RVGGTEPVPV---DVRVVAATH-CALTTAVQQG-------------------------------- 366 (526)
T ss_pred HHhcCcEE-------ecCCCceeee---cceEEeccC-CCHHHHhhhc--------------------------------
Confidence 99743321 1122222233 356677765 4454444332
Q ss_pred hccchhhhhhcCccccccccce-EEEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHH-------H
Q 005670 512 TVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRL-------I 581 (684)
Q Consensus 512 ~v~~~dll~~~f~PeLl~R~d~-iI~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~-------L 581 (684)
.|+++|+.|++. .|.+|||.+ +|+..++...+..+..++ .+.+++++++. |
T Consensus 367 ----------~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---------~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 367 ----------RFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL---------RLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ----------chhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc---------CCCCCHHHHHHhHHHHHHH
Confidence 367788888864 599999997 788888877544432221 34589999888 7
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCCCC---CcceEEcCcchHHHHHHHHHHh
Q 005670 582 AKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRG---CGAKILYGKGALDRYLAQHKRK 658 (684)
Q Consensus 582 a~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~~~---~~~~i~~~~g~l~~~l~~~~~~ 658 (684)
.. |+|++|.|+|+++|++++......- .-.|+.+.+....+. ...........+... .+.|++
T Consensus 428 ~~--y~WPGNvrEL~nvier~~i~~~~~~-----------~~~I~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~Er~ 493 (526)
T TIGR02329 428 QR--YPWPGNVRELRNLVERLALELSAMP-----------AGALTPDVLRALAPELAEASGKGKTSALSLRER-SRVEAL 493 (526)
T ss_pred Hh--CCCCchHHHHHHHHHHHHHhcccCC-----------CCccCHHHhhhhchhhcccccccccCccchHHH-HHHHHH
Confidence 77 7999999999999999887532100 001111111100000 000000001124333 688999
Q ss_pred hhhhccccCCCCCC
Q 005670 659 DLETNVAGADGEPE 672 (684)
Q Consensus 659 ~~~~~~~~~~~~~~ 672 (684)
.|...++.++|+..
T Consensus 494 ~I~~aL~~~~Gn~~ 507 (526)
T TIGR02329 494 AVRAALERFGGDRD 507 (526)
T ss_pred HHHHHHHHcCCCHH
Confidence 99999999999864
No 41
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.5e-19 Score=196.82 Aligned_cols=221 Identities=24% Similarity=0.303 Sum_probs=158.2
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|-|.+.....|.+.+.. .++ .+... . -.||++|||+||||||||+||+++|.+++
T Consensus 191 diGG~d~~~~el~~li~~-i~~Pe~~~~l--------------------G-v~PprGvLlHGPPGCGKT~lA~AiAgel~ 248 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIH-IKHPEVFSSL--------------------G-VRPPRGVLLHGPPGCGKTSLANAIAGELG 248 (802)
T ss_pred hccChHHHHHHHHHHHHH-hcCchhHhhc--------------------C-CCCCCceeeeCCCCccHHHHHHHHhhhcC
Confidence 368999999999988852 221 11111 1 13468999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
+||+.+++.++. +++.|++ ++.++++|..+.. +.|||+||||||.+.++|+.. + ..+.+++..+||..||+
T Consensus 249 vPf~~isApeiv-SGvSGES-EkkiRelF~~A~~----~aPcivFiDeIDAI~pkRe~a--q-reMErRiVaQLlt~mD~ 319 (802)
T KOG0733|consen 249 VPFLSISAPEIV-SGVSGES-EKKIRELFDQAKS----NAPCIVFIDEIDAITPKREEA--Q-REMERRIVAQLLTSMDE 319 (802)
T ss_pred CceEeecchhhh-cccCccc-HHHHHHHHHHHhc----cCCeEEEeecccccccchhhH--H-HHHHHHHHHHHHHhhhc
Confidence 999999999999 8999998 8889999999875 589999999999999987752 2 33345588889999984
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
-.. .. .+...+++|.++|..|
T Consensus 320 l~~--------~~-------~~g~~VlVIgATnRPD-------------------------------------------- 340 (802)
T KOG0733|consen 320 LSN--------EK-------TKGDPVLVIGATNRPD-------------------------------------------- 340 (802)
T ss_pred ccc--------cc-------cCCCCeEEEecCCCCc--------------------------------------------
Confidence 211 00 1223488999888543
Q ss_pred hhhhhhcCcccc--ccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 516 SDLIAYGLIPEF--VGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dll~~~f~PeL--l~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
.+.|.| .+|||.-|.+.-+++....+||+..+..+ .+...|+ .+.||+. ++++=.-
T Consensus 341 ------slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l-----------rl~g~~d---~~qlA~l--TPGfVGA 398 (802)
T KOG0733|consen 341 ------SLDPALRRAGRFDREICLGVPSETAREEILRIICRGL-----------RLSGDFD---FKQLAKL--TPGFVGA 398 (802)
T ss_pred ------ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC-----------CCCCCcC---HHHHHhc--CCCccch
Confidence 012333 38999999999999999999998643322 1112222 4567774 5555445
Q ss_pred HHHHHHHHHHHHHHhcC
Q 005670 594 GLRSLLENILMDAMYEI 610 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~ 610 (684)
.|..++..+-.-++-++
T Consensus 399 DL~AL~~~Aa~vAikR~ 415 (802)
T KOG0733|consen 399 DLMALCREAAFVAIKRI 415 (802)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 77777766554444443
No 42
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.7e-19 Score=181.35 Aligned_cols=216 Identities=25% Similarity=0.400 Sum_probs=157.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|-|.+..++.+.+.+..+.++... .+.-.++. |.++||+||||||||+||+++|....+.
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPEL------------------F~aLGIaQ-PKGvlLygppgtGktLlaraVahht~c~ 208 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPEL------------------FEALGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCT 208 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHH------------------HHhcCCCC-CcceEEecCCCCchhHHHHHHHhhcceE
Confidence 4789999999999999765543211 11111111 3799999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc---
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--- 434 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE--- 434 (684)
|++++++++. .+|+|+. ...++++|-.++. ..++|||.||||.+...|..++.++|.+ +|..+|++|+
T Consensus 209 firvsgselv-qk~igeg-srmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdse---vqrtmlellnqld 279 (404)
T KOG0728|consen 209 FIRVSGSELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSE---VQRTMLELLNQLD 279 (404)
T ss_pred EEEechHHHH-HHHhhhh-HHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHH---HHHHHHHHHHhcc
Confidence 9999999999 6999998 7899999988764 5899999999999999887766665544 7888877775
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
|+. .++|+-+||++|..|+
T Consensus 280 gfe-------------------atknikvimatnridi------------------------------------------ 298 (404)
T KOG0728|consen 280 GFE-------------------ATKNIKVIMATNRIDI------------------------------------------ 298 (404)
T ss_pred ccc-------------------cccceEEEEecccccc------------------------------------------
Confidence 321 3568999999985441
Q ss_pred chhhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCH
Q 005670 515 SSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 515 ~~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GA 592 (684)
+.|.|+ +|||..|.|+|++++...+|++.+...+. -.+|+. ++.++++ +..-.||
T Consensus 299 --------ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmn-------l~rgi~-------l~kiaek-m~gasga 355 (404)
T KOG0728|consen 299 --------LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN-------LTRGIN-------LRKIAEK-MPGASGA 355 (404)
T ss_pred --------ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc-------hhcccC-------HHHHHHh-CCCCccc
Confidence 112222 89999999999999999999876432221 112433 4677776 4455553
Q ss_pred HHHHHHHHHHHHHH
Q 005670 593 RGLRSLLENILMDA 606 (684)
Q Consensus 593 R~Lr~iIe~~l~~a 606 (684)
+++.++..+=.-+
T Consensus 356 -evk~vcteagm~a 368 (404)
T KOG0728|consen 356 -EVKGVCTEAGMYA 368 (404)
T ss_pred -hhhhhhhhhhHHH
Confidence 6666665443333
No 43
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.80 E-value=1.3e-18 Score=202.37 Aligned_cols=267 Identities=15% Similarity=0.230 Sum_probs=174.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.++|.+.+.+.+.+.+...-+ ...+|||+|++||||+++|++|++...
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~------------------------------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~ 375 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAK------------------------------SSFPVLLCGEEGVGKALLAQAIHNESERA 375 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhC------------------------------cCCCEEEECCCCcCHHHHHHHHHHhCCcc
Confidence 368999888888777741111 126899999999999999999999874
Q ss_pred -CCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 356 -VPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 356 -~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
.||+.+||..+.+ +.++|+..+. .-....+.++.+.+|+||||||+.|+.. +|..|+
T Consensus 376 ~~pfv~vnc~~~~~~~~~~elfg~~~~~----~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q~~Ll 437 (638)
T PRK11388 376 AGPYIAVNCQLYPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQSALL 437 (638)
T ss_pred CCCeEEEECCCCChHHHHHHhcCCCCcC----ccCCCCCceeECCCCEEEEcChhhCCHH--------------HHHHHH
Confidence 6999999998752 2334432000 0011223456678899999999999988 999999
Q ss_pred HHHcCc-eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHH
Q 005670 431 KMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 431 ~~LEg~-~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~L 509 (684)
++|+.. ...+ +..+.+.+| +.+|++++ .++++.+.++
T Consensus 438 ~~l~~~~~~~~--------~~~~~~~~~---~riI~~t~-~~l~~~~~~~------------------------------ 475 (638)
T PRK11388 438 QVLKTGVITRL--------DSRRLIPVD---VRVIATTT-ADLAMLVEQN------------------------------ 475 (638)
T ss_pred HHHhcCcEEeC--------CCCceEEee---EEEEEecc-CCHHHHHhcC------------------------------
Confidence 999833 2221 112223333 56777766 4455444332
Q ss_pred HhhccchhhhhhcCccccccccceE-EEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcC
Q 005670 510 METVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 510 l~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~ 586 (684)
.|+++|+.|+... |.+|||.+ +|+..+++..+..+.+++ +..+.+++++++.|.+ |
T Consensus 476 ------------~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~~s~~a~~~L~~--y 534 (638)
T PRK11388 476 ------------RFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF-------STRLKIDDDALARLVS--Y 534 (638)
T ss_pred ------------CChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh-------CCCCCcCHHHHHHHHc--C
Confidence 4677888888654 89999987 688888877554443322 3346799999999999 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCC----CCCCcceEEcCcchHHHHHHHHHHhhhhh
Q 005670 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSE----DRGCGAKILYGKGALDRYLAQHKRKDLET 662 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~----~~~~~~~i~~~~g~l~~~l~~~~~~~~~~ 662 (684)
+|++|.|+|+++|++++... +- ..|+.+++... ....... ........-+++.|++.|.+
T Consensus 535 ~WPGNvreL~~~l~~~~~~~--~~------------~~i~~~~lp~~~~~~~~~~~~~--~~~~~~~~~l~~~E~~~i~~ 598 (638)
T PRK11388 535 RWPGNDFELRSVIENLALSS--DN------------GRIRLSDLPEHLFTEQATDDVS--ATRLSTSLSLAELEKEAIIN 598 (638)
T ss_pred CCCChHHHHHHHHHHHHHhC--CC------------CeecHHHCchhhhccccccccc--ccccccchhHHHHHHHHHHH
Confidence 89999999999999987642 10 01222221110 0000000 00001112367889999999
Q ss_pred ccccCCCCC
Q 005670 663 NVAGADGEP 671 (684)
Q Consensus 663 ~~~~~~~~~ 671 (684)
+++.++|+.
T Consensus 599 al~~~~gn~ 607 (638)
T PRK11388 599 AAQVCGGRI 607 (638)
T ss_pred HHHHhCCCH
Confidence 999998875
No 44
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.80 E-value=1.3e-18 Score=195.71 Aligned_cols=217 Identities=21% Similarity=0.306 Sum_probs=154.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|.|++.+|+.+.+.... +.. ..+ ..| - .++.++||+||||||||++|+++|..++.|
T Consensus 229 dvgGl~~lK~~l~~~~~~-~~~---~~~---~~g---l------------~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTS-FSK---QAS---NYG---L------------PTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HhcCHHHHHHHHHHHHHH-hhH---HHH---hcC---C------------CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 479999999988765421 110 000 000 0 124899999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++.+. ++|+|+. +..++++|..+. ...+|||||||||++...+...+ ......++.+.|+..|++.
T Consensus 287 ~~~l~~~~l~-~~~vGes-e~~l~~~f~~A~----~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~~- 357 (489)
T CHL00195 287 LLRLDVGKLF-GGIVGES-ESRMRQMIRIAE----ALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSEK- 357 (489)
T ss_pred EEEEEhHHhc-ccccChH-HHHHHHHHHHHH----hcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhcC-
Confidence 9999999988 7899987 778888887654 35789999999999876433211 1122345777788888620
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
..++++|+|+|..+
T Consensus 358 --------------------~~~V~vIaTTN~~~---------------------------------------------- 371 (489)
T CHL00195 358 --------------------KSPVFVVATANNID---------------------------------------------- 371 (489)
T ss_pred --------------------CCceEEEEecCChh----------------------------------------------
Confidence 13478888888432
Q ss_pred hhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHH
Q 005670 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 ll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~L 595 (684)
.++|+++ +|||.++.++.++.++..+|++.++... + ....++..++.|++. +.++..++|
T Consensus 372 ----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~-----------~-~~~~~~~dl~~La~~--T~GfSGAdI 433 (489)
T CHL00195 372 ----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF-----------R-PKSWKKYDIKKLSKL--SNKFSGAEI 433 (489)
T ss_pred ----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc-----------C-CCcccccCHHHHHhh--cCCCCHHHH
Confidence 2446665 5999999999999999999998643221 1 111234457788884 678888999
Q ss_pred HHHHHHHHHHHHhc
Q 005670 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
++++..++..+..+
T Consensus 434 ~~lv~eA~~~A~~~ 447 (489)
T CHL00195 434 EQSIIEAMYIAFYE 447 (489)
T ss_pred HHHHHHHHHHHHHc
Confidence 99998888777643
No 45
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.80 E-value=8.7e-19 Score=199.35 Aligned_cols=270 Identities=15% Similarity=0.231 Sum_probs=173.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|.+.+.+.+...+. +.. ....+|||+|++||||+++|++++...
T Consensus 205 ~~ig~s~~~~~~~~~~~----~~A--------------------------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~ 254 (520)
T PRK10820 205 QIVAVSPKMRQVVEQAR----KLA--------------------------MLDAPLLITGDTGTGKDLLAYACHLRSPRG 254 (520)
T ss_pred ceeECCHHHHHHHHHHH----HHh--------------------------CCCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 47999998888777764 110 012689999999999999999999876
Q ss_pred CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 355 NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||+.+.+ +.++|+..+... .......+.++.+.+|+||||||+.|++. +|.+|+
T Consensus 255 ~~pfv~inca~~~~~~~e~elFG~~~~~~~-~~~~~~~g~~e~a~~GtL~LdeI~~L~~~--------------~Q~~Ll 319 (520)
T PRK10820 255 KKPFLALNCASIPDDVVESELFGHAPGAYP-NALEGKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLL 319 (520)
T ss_pred CCCeEEeccccCCHHHHHHHhcCCCCCCcC-CcccCCCChhhhcCCCEEEEeChhhCCHH--------------HHHHHH
Confidence 36899999998762 122333211100 11112234566778999999999999987 999999
Q ss_pred HHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHH
Q 005670 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll 510 (684)
++++...+. ..+....+.+ ++.+|++++ .++++++.++
T Consensus 320 ~~l~~~~~~-------~~g~~~~~~~---~vRiI~st~-~~l~~l~~~g------------------------------- 357 (520)
T PRK10820 320 RFLNDGTFR-------RVGEDHEVHV---DVRVICATQ-KNLVELVQKG------------------------------- 357 (520)
T ss_pred HHHhcCCcc-------cCCCCcceee---eeEEEEecC-CCHHHHHHcC-------------------------------
Confidence 999732211 1111122223 466777665 4455554433
Q ss_pred hhccchhhhhhcCccccccccce-EEEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCc-cccccHHHHHHHHHhcC
Q 005670 511 ETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGV-KLHFTENALRLIAKKAI 586 (684)
Q Consensus 511 ~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi-~l~~s~eAl~~La~~a~ 586 (684)
.|+++|++|+.. .|.+|||.+ +|+..++...+..+.+++ |. ...+++++++.|.+ |
T Consensus 358 -----------~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~-------g~~~~~ls~~a~~~L~~--y 417 (520)
T PRK10820 358 -----------EFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQ-------GVPRPKLAADLNTVLTR--Y 417 (520)
T ss_pred -----------CccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHc-------CCCCCCcCHHHHHHHhc--C
Confidence 367788888864 599999987 678887776544443322 32 35799999999998 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccC--CCCCCCcceEEcCcchHHHHHHHHHHhhhhhcc
Q 005670 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVG--SEDRGCGAKILYGKGALDRYLAQHKRKDLETNV 664 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~--~~~~~~~~~i~~~~g~l~~~l~~~~~~~~~~~~ 664 (684)
.|++|.|+|+++|++++..+-... |+.+++. ..............+.|+..++++|++.+.+.+
T Consensus 418 ~WPGNvreL~nvl~~a~~~~~~~~--------------i~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~~E~~~i~~~l 483 (520)
T PRK10820 418 GWPGNVRQLKNAIYRALTQLEGYE--------------LRPQDILLPDYDAAVAVGEDAMEGSLDEITSRFERSVLTRLY 483 (520)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCc--------------ccHHHcCCcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999887432111 1111110 000000000001234688888999999988866
Q ss_pred ccCC
Q 005670 665 AGAD 668 (684)
Q Consensus 665 ~~~~ 668 (684)
....
T Consensus 484 ~~~~ 487 (520)
T PRK10820 484 RNYP 487 (520)
T ss_pred HHCC
Confidence 5443
No 46
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.79 E-value=1.9e-18 Score=195.51 Aligned_cols=217 Identities=24% Similarity=0.307 Sum_probs=151.1
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|+|++++|+.+.+.+.. ++. .+.... ...+.++||+||||||||++|+++|..++
T Consensus 56 di~g~~~~k~~l~~~~~~-l~~~~~~~~~g---------------------~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDF-LKNPSKFTKLG---------------------AKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHHhcC---------------------CCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 379999999999987752 111 111100 01247899999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.||+.++++++. ..|+|.. ...++.+|..+.. ..++||||||||.+...+.....+.+...+.+.+.||..|++
T Consensus 114 ~~~~~i~~~~~~-~~~~g~~-~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~ 187 (495)
T TIGR01241 114 VPFFSISGSDFV-EMFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 187 (495)
T ss_pred CCeeeccHHHHH-HHHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc
Confidence 999999999887 5778876 6678888877543 478999999999998876543223334445678888888884
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ...++++|+|+|..+
T Consensus 188 ~~-------------------~~~~v~vI~aTn~~~-------------------------------------------- 204 (495)
T TIGR01241 188 FG-------------------TNTGVIVIAATNRPD-------------------------------------------- 204 (495)
T ss_pred cc-------------------CCCCeEEEEecCChh--------------------------------------------
Confidence 21 123478888888432
Q ss_pred hhhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
.+.|.++ +|||..|.++.++.++..+|++..+.. ..+. ++..+..+++. ..++..+
T Consensus 205 ------~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~-------------~~~~-~~~~l~~la~~--t~G~sga 262 (495)
T TIGR01241 205 ------VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN-------------KKLA-PDVDLKAVARR--TPGFSGA 262 (495)
T ss_pred ------hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc-------------CCCC-cchhHHHHHHh--CCCCCHH
Confidence 1234444 599999999999999999998753211 1111 23345567764 4556667
Q ss_pred HHHHHHHHHHHHHH
Q 005670 594 GLRSLLENILMDAM 607 (684)
Q Consensus 594 ~Lr~iIe~~l~~al 607 (684)
+|+++++.+...+.
T Consensus 263 dl~~l~~eA~~~a~ 276 (495)
T TIGR01241 263 DLANLLNEAALLAA 276 (495)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887655443
No 47
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.79 E-value=5.2e-19 Score=201.76 Aligned_cols=221 Identities=19% Similarity=0.308 Sum_probs=154.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|++.+++.+.+.+...- ....+|||+|++||||+++|++|+...
T Consensus 197 ~liG~s~~~~~~~~~~~~~a------------------------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~ 246 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVA------------------------------RSNSTVLLRGESGTGKELIAKAIHYLSPRA 246 (534)
T ss_pred ceEECCHHHHHHHHHHHHHh------------------------------CcCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 57899999888888775111 112689999999999999999999986
Q ss_pred CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 355 NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ +..+|+..+. +........+.++.+.+|+||||||+.++.. +|..|+
T Consensus 247 ~~pfv~i~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll 311 (534)
T TIGR01817 247 KRPFVKVNCAALSETLLESELFGHEKGA-FTGAIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLL 311 (534)
T ss_pred CCCeEEeecCCCCHHHHHHHHcCCCCCc-cCCCCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHH
Confidence 46999999998752 1222322110 0011111234466778899999999999988 999999
Q ss_pred HHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHH
Q 005670 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll 510 (684)
++|+...+. ..+..+.+.+ ++.+|++++ .++++.+..
T Consensus 312 ~~l~~~~~~-------~~~~~~~~~~---~~riI~~s~-~~l~~~~~~-------------------------------- 348 (534)
T TIGR01817 312 RVLQEGEFE-------RVGGNRTLKV---DVRLVAATN-RDLEEAVAK-------------------------------- 348 (534)
T ss_pred HHHhcCcEE-------ECCCCceEee---cEEEEEeCC-CCHHHHHHc--------------------------------
Confidence 999832221 1111222233 466777765 344443322
Q ss_pred hhccchhhhhhcCccccccccce-EEEccccC--HHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCC
Q 005670 511 ETVESSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 511 ~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLs--eeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~ 587 (684)
..|+++|++|++. .|.++||. .+|+..+++..+..+.+++ +..+.+++++++.|.+ |+
T Consensus 349 ----------~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~-------~~~~~~s~~a~~~L~~--~~ 409 (534)
T TIGR01817 349 ----------GEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNREN-------GRPLTITPSAIRVLMS--CK 409 (534)
T ss_pred ----------CCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHc-------CCCCCCCHHHHHHHHh--CC
Confidence 2478889999975 58999998 4889888887555443322 3347899999999999 68
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 005670 588 KNTGARGLRSLLENILMD 605 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~ 605 (684)
|++|+|+|+++|++++..
T Consensus 410 WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 410 WPGNVRELENCLERTATL 427 (534)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 999999999999998864
No 48
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.79 E-value=6.9e-19 Score=199.81 Aligned_cols=218 Identities=19% Similarity=0.286 Sum_probs=151.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH-----
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY----- 353 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~----- 353 (684)
++|++.+++.+.+.+...- ....+|||+|++||||+++|++|++.
T Consensus 221 iiG~S~~m~~~~~~i~~~A------------------------------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~ 270 (538)
T PRK15424 221 LLGQSPQMEQVRQTILLYA------------------------------RSSAAVLIQGETGTGKELAAQAIHREYFARH 270 (538)
T ss_pred eeeCCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCCCHHHHHHHHHHhhcccc
Confidence 7999999998888875110 11279999999999999999999998
Q ss_pred ---h---CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcch
Q 005670 354 ---V---NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 354 ---l---~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (684)
. +.||+.+||+.+.+ +.++|+..+......-....+.++.+.+|+||||||+.|+..
T Consensus 271 ~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~------------- 337 (538)
T PRK15424 271 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP------------- 337 (538)
T ss_pred cccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHH-------------
Confidence 3 56999999998752 344554422211111112345677888999999999999988
Q ss_pred HHHHHHHHHHcCcee-eccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCch
Q 005670 424 GVQQALLKMLEGTVV-NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v-~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~ 502 (684)
+|..|+++|+...+ .+ +..+.+.+ ++.+|++++ .+|++.+.++
T Consensus 338 -~Q~kLl~~L~e~~~~r~--------G~~~~~~~---dvRiIaat~-~~L~~~v~~g----------------------- 381 (538)
T PRK15424 338 -LQTRLLRVLEEKEVTRV--------GGHQPVPV---DVRVISATH-CDLEEDVRQG----------------------- 381 (538)
T ss_pred -HHHHHHhhhhcCeEEec--------CCCceecc---ceEEEEecC-CCHHHHHhcc-----------------------
Confidence 99999999974332 22 22222233 466777765 4566555444
Q ss_pred hhhhHHHHhhccchhhhhhcCccccccccce-EEEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHH-
Q 005670 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL- 578 (684)
Q Consensus 503 ~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl- 578 (684)
.|+++|+.|+.. .|.+|||.+ +|+..++...+.....++ ...++++++
T Consensus 382 -------------------~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---------~~~~~~~a~~ 433 (538)
T PRK15424 382 -------------------RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL---------SAPFSAALRQ 433 (538)
T ss_pred -------------------cchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc---------CCCCCHHHHH
Confidence 366777778764 488999987 788888776443332211 233666665
Q ss_pred ------HHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 005670 579 ------RLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 579 ------~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
+.|.. |+|++|+|+|+++|++++..
T Consensus 434 ~~~~a~~~L~~--y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 434 GLQQCETLLLH--YDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hhHHHHHHHHh--CCCCchHHHHHHHHHHHHHh
Confidence 56666 79999999999999998873
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2e-18 Score=195.07 Aligned_cols=220 Identities=25% Similarity=0.337 Sum_probs=165.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
+.|.+.+|+.+.+++....++.....+ .+ -.++.++||+||||||||++|+++|..++.+|
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~-------~~------------~~~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRK-------LG------------LRPPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHh-------cC------------CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 678999999999999876665332111 00 01247999999999999999999999999999
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCcee
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++++. ++|+|+. ++.++.+|..+. +..+|||||||+|++.+.|+... +.....+.+.||..|+|-.
T Consensus 305 i~v~~~~l~-sk~vGes-ek~ir~~F~~A~----~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e- 374 (494)
T COG0464 305 ISVKGSELL-SKWVGES-EKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIE- 374 (494)
T ss_pred EEeeCHHHh-ccccchH-HHHHHHHHHHHH----cCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCC-
Confidence 999999888 8999998 899999999876 35899999999999998865432 2222569999999998421
Q ss_pred eccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhh
Q 005670 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dl 518 (684)
..+++++|.++|..+
T Consensus 375 ------------------~~~~v~vi~aTN~p~----------------------------------------------- 389 (494)
T COG0464 375 ------------------KAEGVLVIAATNRPD----------------------------------------------- 389 (494)
T ss_pred ------------------ccCceEEEecCCCcc-----------------------------------------------
Confidence 234577888888442
Q ss_pred hhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccc-cccHHHHHHHHHhcCCCCCCHHHH
Q 005670 519 IAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 519 l~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l-~~s~eAl~~La~~a~~~~~GAR~L 595 (684)
.+.|+++. |||.++.+++++.++..+|++.++... .. ..++-.++.+++ ...++....+
T Consensus 390 ---~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~-------------~~~~~~~~~~~~l~~--~t~~~sgadi 451 (494)
T COG0464 390 ---DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK-------------KPPLAEDVDLEELAE--ITEGYSGADI 451 (494)
T ss_pred ---ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc-------------CCcchhhhhHHHHHH--HhcCCCHHHH
Confidence 13345555 999999999999999999988643211 11 133455566666 3455666899
Q ss_pred HHHHHHHHHHHHhcC
Q 005670 596 RSLLENILMDAMYEI 610 (684)
Q Consensus 596 r~iIe~~l~~al~e~ 610 (684)
..+++.+...++.+.
T Consensus 452 ~~i~~ea~~~~~~~~ 466 (494)
T COG0464 452 AALVREAALEALREA 466 (494)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888887665
No 50
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-18 Score=197.87 Aligned_cols=217 Identities=24% Similarity=0.285 Sum_probs=157.8
Q ss_pred cccChHHHHHHHHHHHHh-hhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 278 FVIGQERAKKVLSVAVYN-HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
.|.|.++||+.|.+.|.= .....++.... .-|.++||+||||||||+||+++|.+.++
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGa---------------------kiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGA---------------------KIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhccc---------------------ccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 489999999999999840 00011111111 12489999999999999999999999999
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
||+.++.+++. ..|+|.. .+.++++|..+.. ..+|||||||||.+.+.|+.+-+++...+|+.+|+||..|||.
T Consensus 210 PFf~iSGS~FV-emfVGvG-AsRVRdLF~qAkk----~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 210 PFFSISGSDFV-EMFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred Cceeccchhhh-hhhcCCC-cHHHHHHHHHhhc----cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 99999999999 5999998 7899999998774 4789999999999999998777777888889999999999963
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
.. .+.+++|+++|..|. .++
T Consensus 284 ~~-------------------~~gviviaaTNRpdV---------------------------------lD~-------- 303 (596)
T COG0465 284 GG-------------------NEGVIVIAATNRPDV---------------------------------LDP-------- 303 (596)
T ss_pred CC-------------------CCceEEEecCCCccc---------------------------------chH--------
Confidence 21 124788888885431 000
Q ss_pred hhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccc--ccHHHHHHHHHhcCCCCCCHHH
Q 005670 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH--FTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 517 dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~--~s~eAl~~La~~a~~~~~GAR~ 594 (684)
.-++| +|||..|.++.++-...++|++.+. ++..+. ++-. .+++. ++++..-.
T Consensus 304 ----ALlRp---gRFDRqI~V~~PDi~gRe~IlkvH~-------------~~~~l~~~Vdl~---~iAr~--tpGfsGAd 358 (596)
T COG0465 304 ----ALLRP---GRFDRQILVELPDIKGREQILKVHA-------------KNKPLAEDVDLK---KIARG--TPGFSGAD 358 (596)
T ss_pred ----hhcCC---CCcceeeecCCcchhhHHHHHHHHh-------------hcCCCCCcCCHH---HHhhh--CCCcccch
Confidence 01234 8999999999999999999987421 122332 2222 25553 45554457
Q ss_pred HHHHHHHHHHHH
Q 005670 595 LRSLLENILMDA 606 (684)
Q Consensus 595 Lr~iIe~~l~~a 606 (684)
|.+++.....-+
T Consensus 359 L~nl~NEAal~a 370 (596)
T COG0465 359 LANLLNEAALLA 370 (596)
T ss_pred HhhhHHHHHHHH
Confidence 777775444433
No 51
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=2.3e-18 Score=203.31 Aligned_cols=220 Identities=21% Similarity=0.328 Sum_probs=163.9
Q ss_pred ccccChHHHHHHHHHHHHhhhhhH--hhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRI--YNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+.|.|++.+|+.|.+.+..+.++. +.... ..++.++||+||||||||++|+++|.++
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---------------------~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMG---------------------IRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---------------------CCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 348999999999999997544421 11111 0124789999999999999999999999
Q ss_pred CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 355 NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+|+.++++++. +.|+|+. +..++.+|..+. ...++||||||||.+.+.++... .....+.+.+.||..|+
T Consensus 512 ~~~fi~v~~~~l~-~~~vGes-e~~i~~~f~~A~----~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ld 583 (733)
T TIGR01243 512 GANFIAVRGPEIL-SKWVGES-EKAIREIFRKAR----QAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMD 583 (733)
T ss_pred CCCEEEEehHHHh-hcccCcH-HHHHHHHHHHHH----hcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhh
Confidence 9999999999988 7899998 788999998765 35789999999999988764321 11233558899999998
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
|. ....++++|+|+|..+
T Consensus 584 g~-------------------~~~~~v~vI~aTn~~~------------------------------------------- 601 (733)
T TIGR01243 584 GI-------------------QELSNVVVIAATNRPD------------------------------------------- 601 (733)
T ss_pred cc-------------------cCCCCEEEEEeCCChh-------------------------------------------
Confidence 51 1234689999988432
Q ss_pred chhhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc-HHHHHHHHHhcCCCCCC
Q 005670 515 SSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTG 591 (684)
Q Consensus 515 ~~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s-~eAl~~La~~a~~~~~G 591 (684)
.+.|.++ +|||.+|.++.++.++..+|++... + ...++ +..++.|++. ..++.
T Consensus 602 -------~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~-------------~--~~~~~~~~~l~~la~~--t~g~s 657 (733)
T TIGR01243 602 -------ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT-------------R--SMPLAEDVDLEELAEM--TEGYT 657 (733)
T ss_pred -------hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh-------------c--CCCCCccCCHHHHHHH--cCCCC
Confidence 1335555 5999999999999999999986421 1 12222 2346778874 56777
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 005670 592 ARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 592 AR~Lr~iIe~~l~~al~e~~ 611 (684)
..+|+++++.+...++.+..
T Consensus 658 gadi~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 658 GADIEAVCREAAMAALRESI 677 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88999999998888877653
No 52
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.78 E-value=4.2e-18 Score=187.56 Aligned_cols=222 Identities=20% Similarity=0.280 Sum_probs=153.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|.|++.+|+.|.+++..++.+...... .| . .++.++||+||||||||++|+++|+.++.+
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~----~G---l------------~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQ----IG---I------------DPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHh----cC---C------------CCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4899999999999999765543211100 00 0 124899999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+.++++. ..|+|.. ...++.+|..+. ...++||||||||.+...+.....+.+...+.+...|+..|+|..
T Consensus 207 fi~i~~s~l~-~k~~ge~-~~~lr~lf~~A~----~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 207 FIRVVGSEFV-QKYLGEG-PRMVRDVFRLAR----ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred EEEEehHHHH-HHhcchh-HHHHHHHHHHHH----hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 9999998887 6888887 667888887654 347899999999999876643333333232334445555555310
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
...++++|+++|..+
T Consensus 281 -------------------~~~~v~VI~aTN~~d---------------------------------------------- 295 (398)
T PTZ00454 281 -------------------QTTNVKVIMATNRAD---------------------------------------------- 295 (398)
T ss_pred -------------------CCCCEEEEEecCCch----------------------------------------------
Confidence 123578888888332
Q ss_pred hhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHH
Q 005670 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 ll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~L 595 (684)
.+.|.++ +|||..|.|+.++.++...|++..+.. .++.-.+ .+..++.. ..++..++|
T Consensus 296 ----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-----------~~l~~dv---d~~~la~~--t~g~sgaDI 355 (398)
T PTZ00454 296 ----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-----------MNLSEEV---DLEDFVSR--PEKISAADI 355 (398)
T ss_pred ----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-----------CCCCccc---CHHHHHHH--cCCCCHHHH
Confidence 1334554 599999999999999999888752211 1212112 34566664 567778999
Q ss_pred HHHHHHHHHHHHhc
Q 005670 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
++++..+...++.+
T Consensus 356 ~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 356 AAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888777644
No 53
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.77 E-value=6.5e-18 Score=185.79 Aligned_cols=222 Identities=24% Similarity=0.346 Sum_probs=152.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|.|.+++++.|.+.+..+..+...... .| ..++.++||+||||||||++|+++|+.++.+
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~----~g---------------~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEE----VG---------------IEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHh----cC---------------CCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 5899999999999999754443211100 00 0124799999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|.. ...++.+|..+.. ..++||||||||.+...+...+.+.+ ..+++.|+.++..-
T Consensus 193 ~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~---~~~~~~l~~lL~~l- 262 (389)
T PRK03992 193 FIRVVGSELV-QKFIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAEM- 262 (389)
T ss_pred EEEeehHHHh-Hhhccch-HHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCcc---HHHHHHHHHHHHhc-
Confidence 9999999987 6888877 6778888876543 46899999999999876544322222 23555565555310
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
++ . .+..++++|+|+|..+
T Consensus 263 -----d~--~--------~~~~~v~VI~aTn~~~---------------------------------------------- 281 (389)
T PRK03992 263 -----DG--F--------DPRGNVKIIAATNRID---------------------------------------------- 281 (389)
T ss_pred -----cc--c--------CCCCCEEEEEecCChh----------------------------------------------
Confidence 00 0 0123578888888321
Q ss_pred hhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHH
Q 005670 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 ll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~L 595 (684)
.+.|.++ +||+..|.|++++.++..+|++..+. +..+. .+..+..|+.. ..++..+.|
T Consensus 282 ----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~-------------~~~~~-~~~~~~~la~~--t~g~sgadl 341 (389)
T PRK03992 282 ----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR-------------KMNLA-DDVDLEELAEL--TEGASGADL 341 (389)
T ss_pred ----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc-------------cCCCC-CcCCHHHHHHH--cCCCCHHHH
Confidence 1234454 59999999999999999999875211 11211 11235667774 567788999
Q ss_pred HHHHHHHHHHHHhc
Q 005670 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
+.++..+...++.+
T Consensus 342 ~~l~~eA~~~a~~~ 355 (389)
T PRK03992 342 KAICTEAGMFAIRD 355 (389)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888777654
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=7e-18 Score=174.26 Aligned_cols=190 Identities=26% Similarity=0.411 Sum_probs=143.4
Q ss_pred hhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005670 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.|+++ +||+++|+.|...+.....| . ...-|+||+||||.|||+||..+|++
T Consensus 24 ~l~ef-iGQ~~vk~~L~ifI~AAk~r-------~--------------------e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 24 TLDEF-IGQEKVKEQLQIFIKAAKKR-------G--------------------EALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred cHHHh-cChHHHHHHHHHHHHHHHhc-------C--------------------CCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 34444 99999999999888632221 1 11379999999999999999999999
Q ss_pred hCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHH
Q 005670 354 VNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 354 l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
+++.+...++..+..+ +... .++..- ..+-|+||||||++.+. +-..|+.+|
T Consensus 76 mgvn~k~tsGp~leK~-------gDla-aiLt~L------e~~DVLFIDEIHrl~~~--------------vEE~LYpaM 127 (332)
T COG2255 76 LGVNLKITSGPALEKP-------GDLA-AILTNL------EEGDVLFIDEIHRLSPA--------------VEEVLYPAM 127 (332)
T ss_pred hcCCeEecccccccCh-------hhHH-HHHhcC------CcCCeEEEehhhhcChh--------------HHHHhhhhh
Confidence 9999888777766532 2222 222211 24479999999999987 889999999
Q ss_pred cCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhc
Q 005670 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 434 Eg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v 513 (684)
|++.+.|-- | +.+..+.+.+|...+.+|.+++..+
T Consensus 128 EDf~lDI~I-G--~gp~Arsv~ldLppFTLIGATTr~G------------------------------------------ 162 (332)
T COG2255 128 EDFRLDIII-G--KGPAARSIRLDLPPFTLIGATTRAG------------------------------------------ 162 (332)
T ss_pred hheeEEEEE-c--cCCccceEeccCCCeeEeeeccccc------------------------------------------
Confidence 988776521 1 1244567889999999998877433
Q ss_pred cchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhc
Q 005670 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 514 ~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a 585 (684)
.+..+|++||.++..+.-++.+|+.+|+.+....+ .+.+++++...|++++
T Consensus 163 --------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-------------~i~i~~~~a~eIA~rS 213 (332)
T COG2255 163 --------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-------------GIEIDEEAALEIARRS 213 (332)
T ss_pred --------cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-------------CCCCChHHHHHHHHhc
Confidence 14567999999999999999999999987633222 7889999999999974
No 55
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.4e-18 Score=192.34 Aligned_cols=222 Identities=29% Similarity=0.395 Sum_probs=164.5
Q ss_pred ccChHHHHHHHHHHHHhh--hhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 279 VIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
|-|..++|+.|.+.+.++ |..++....-+. +.++|||||||||||+||-++|..++.
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~---------------------~~giLLyGppGcGKT~la~a~a~~~~~ 727 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL---------------------RTGILLYGPPGCGKTLLASAIASNSNL 727 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCccc---------------------ccceEEECCCCCcHHHHHHHHHhhCCe
Confidence 789999999999999864 455665544322 279999999999999999999999999
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
.|+.+.+.++. ++|+|.+ ++.++.+|.+|. .++|||+|+||+|.+.++|+..+.| +. .+|.|+||..|||-
T Consensus 728 ~fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~----~a~PCiLFFDEfdSiAPkRGhDsTG--VT-DRVVNQlLTelDG~ 798 (952)
T KOG0735|consen 728 RFISVKGPELL-SKYIGAS-EQNVRDLFERAQ----SAKPCILFFDEFDSIAPKRGHDSTG--VT-DRVVNQLLTELDGA 798 (952)
T ss_pred eEEEecCHHHH-HHHhccc-HHHHHHHHHHhh----ccCCeEEEeccccccCcccCCCCCC--ch-HHHHHHHHHhhccc
Confidence 99999999999 8999998 889999999876 4799999999999999998653322 22 35999999999974
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
... ..+.+++++...||- ..
T Consensus 799 Egl-------------------~GV~i~aaTsRpdli--------------------------------Dp--------- 818 (952)
T KOG0735|consen 799 EGL-------------------DGVYILAATSRPDLI--------------------------------DP--------- 818 (952)
T ss_pred ccc-------------------ceEEEEEecCCcccc--------------------------------CH---------
Confidence 321 125555555533310 00
Q ss_pred hhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHH
Q 005670 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (684)
.-++| +|+|..|.-+.+++.+..+|++...+.+ ..-++..++.++.. +.++..-.|+
T Consensus 819 ----ALLRp---GRlD~~v~C~~P~~~eRl~il~~ls~s~--------------~~~~~vdl~~~a~~--T~g~tgADlq 875 (952)
T KOG0735|consen 819 ----ALLRP---GRLDKLVYCPLPDEPERLEILQVLSNSL--------------LKDTDVDLECLAQK--TDGFTGADLQ 875 (952)
T ss_pred ----hhcCC---CccceeeeCCCCCcHHHHHHHHHHhhcc--------------CCccccchHHHhhh--cCCCchhhHH
Confidence 01234 8999999999999999999987522211 22345567788885 4555556888
Q ss_pred HHHHHHHHHHHhcCCCc
Q 005670 597 SLLENILMDAMYEIPDV 613 (684)
Q Consensus 597 ~iIe~~l~~al~e~~~~ 613 (684)
.++-.+-..+..++..+
T Consensus 876 ~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 876 SLLYNAQLAAVHEILKR 892 (952)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88877766666655443
No 56
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=2.9e-18 Score=186.99 Aligned_cols=226 Identities=21% Similarity=0.307 Sum_probs=161.4
Q ss_pred hhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005670 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.....+||.+...+.+.+.+.. |. + ...+||++|++||||+.+|+.|+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-~a----------p-------------------~~~~vLi~GetGtGKel~A~~iH~~ 124 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-YA----------P-------------------SGLPVLIIGETGTGKELFARLIHAL 124 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-hC----------C-------------------CCCcEEEecCCCccHHHHHHHHHHh
Confidence 3344579999988888888852 11 0 1279999999999999999999865
Q ss_pred h----CCCEEEEeccccc----ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHH
Q 005670 354 V----NVPFVIADATTLT----QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (684)
Q Consensus 354 l----~~pfv~i~~s~l~----~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~v 425 (684)
. ..||+.+||+.+. ++.++|+..+. +........+.++.+.+|+||+|||+.+++. .
T Consensus 125 s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGa-ftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~ 189 (403)
T COG1221 125 SARRAEAPFIAFNCAAYSENLQEAELFGHEKGA-FTGAQGGKAGLFEQANGGTLFLDEIHRLPPE--------------G 189 (403)
T ss_pred hhcccCCCEEEEEHHHhCcCHHHHHHhccccce-eecccCCcCchheecCCCEEehhhhhhCCHh--------------H
Confidence 5 4599999999887 35577877444 3446667778899999999999999999998 9
Q ss_pred HHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhh
Q 005670 426 QQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 426 q~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~ 504 (684)
|.+|+++|| |...++.. . +....++.+|++++ .++++.+..+
T Consensus 190 Q~kLl~~le~g~~~rvG~--------~---~~~~~dVRli~AT~-~~l~~~~~~g------------------------- 232 (403)
T COG1221 190 QEKLLRVLEEGEYRRVGG--------S---QPRPVDVRLICATT-EDLEEAVLAG------------------------- 232 (403)
T ss_pred HHHHHHHHHcCceEecCC--------C---CCcCCCceeeeccc-cCHHHHHHhh-------------------------
Confidence 999999998 44444421 1 22344577888776 4444443221
Q ss_pred hhHHHHhhccchhhhhhcCcccccc-ccceEEEccccCHH--HHHHHHhchHHHHHHHHHHHHHhcCcccc-ccHHHHHH
Q 005670 505 VTSSLMETVESSDLIAYGLIPEFVG-RFPVLVSLLALTEN--QLVQVLTEPKNALGKQYRKMFQMNGVKLH-FTENALRL 580 (684)
Q Consensus 505 ~~~~Ll~~v~~~dll~~~f~PeLl~-R~d~iI~f~pLsee--el~~Il~~~l~~L~kq~~~~~~~~gi~l~-~s~eAl~~ 580 (684)
.+|.. |+..+|.+|||.+. |+..+++.. .+++.+. .+..+. .++++++.
T Consensus 233 --------------------~dl~~rl~~~~I~LPpLrER~~Di~~L~e~F----l~~~~~~---l~~~~~~~~~~a~~~ 285 (403)
T COG1221 233 --------------------ADLTRRLNILTITLPPLRERKEDILLLAEHF----LKSEARR---LGLPLSVDSPEALRA 285 (403)
T ss_pred --------------------cchhhhhcCceecCCChhhchhhHHHHHHHH----HHHHHHH---cCCCCCCCCHHHHHH
Confidence 24555 67778999999985 444444442 2333222 243443 34699999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 005670 581 IAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 581 La~~a~~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
|.. |+|++|+|+|+|+|++++..+-.+.
T Consensus 286 L~~--y~~pGNirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 286 LLA--YDWPGNIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HHh--CCCCCcHHHHHHHHHHHHHHhcccc
Confidence 998 7899999999999999998875443
No 57
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.77 E-value=4.1e-18 Score=182.98 Aligned_cols=170 Identities=26% Similarity=0.387 Sum_probs=127.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
.+++||||||||||++|+.||+..+.+|..+++..-. -+.++++++.+..........||||||||++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 7999999999999999999999999999999986543 3557777777654444456789999999999987
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~ 490 (684)
.|+.||..+|. | .+++|.+++- +-.
T Consensus 120 --------------QQD~lLp~vE~--------G---------------~iilIGATTE--------------NPs---- 144 (436)
T COG2256 120 --------------QQDALLPHVEN--------G---------------TIILIGATTE--------------NPS---- 144 (436)
T ss_pred --------------hhhhhhhhhcC--------C---------------eEEEEeccCC--------------CCC----
Confidence 89999999992 1 2566666551 111
Q ss_pred cccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcc
Q 005670 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~ 570 (684)
+.+.|.+++|.- ++.|.||+.+++.+++++.+....+. ..+..
T Consensus 145 ------------------------------F~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~rg------l~~~~ 187 (436)
T COG2256 145 ------------------------------FELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEERG------LGGQI 187 (436)
T ss_pred ------------------------------eeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhhcC------CCccc
Confidence 124467777776 89999999999999988732222111 11234
Q ss_pred ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+.++++++++|+.. .++.+|.+-+.+|-+..
T Consensus 188 ~~i~~~a~~~l~~~---s~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 188 IVLDEEALDYLVRL---SNGDARRALNLLELAAL 218 (436)
T ss_pred ccCCHHHHHHHHHh---cCchHHHHHHHHHHHHH
Confidence 66999999999996 46779999999886554
No 58
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.76 E-value=2.3e-17 Score=185.91 Aligned_cols=218 Identities=21% Similarity=0.259 Sum_probs=149.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|.|++..++.+..++..++.+....... + -.++.++||+||||||||++|+++|+.++.+
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~----g---------------l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREY----D---------------LKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhc----c---------------CCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 37899999999999997554432111100 0 0124799999999999999999999998644
Q ss_pred ----------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHH
Q 005670 358 ----------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 358 ----------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~ 427 (684)
|+.+..+++. ..|+|+. +..++.+|..+........++||||||+|.+...|+... +.+. ...+.+
T Consensus 244 i~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~-e~~il~ 319 (512)
T TIGR03689 244 IGAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDV-ETTVVP 319 (512)
T ss_pred cccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchH-HHHHHH
Confidence 5566666766 6799987 677888887765433344689999999999987654321 1222 234778
Q ss_pred HHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhH
Q 005670 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~ 507 (684)
.||..|+|. -...++++|+|+|..+
T Consensus 320 ~LL~~LDgl-------------------~~~~~ViVI~ATN~~d------------------------------------ 344 (512)
T TIGR03689 320 QLLSELDGV-------------------ESLDNVIVIGASNRED------------------------------------ 344 (512)
T ss_pred HHHHHhccc-------------------ccCCceEEEeccCChh------------------------------------
Confidence 899999841 1224688999988432
Q ss_pred HHHhhccchhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhc
Q 005670 508 SLMETVESSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 508 ~Ll~~v~~~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a 585 (684)
.+.|.+++ |||..|.|++++.++..+|++..+.. .+.+++++ +.
T Consensus 345 --------------~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~--------------~l~l~~~l----~~-- 390 (512)
T TIGR03689 345 --------------MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD--------------SLPLDADL----AE-- 390 (512)
T ss_pred --------------hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc--------------cCCchHHH----HH--
Confidence 14566765 99999999999999999998763211 23343332 22
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Q 005670 586 ISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 586 ~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
..+.....+..++++++.....
T Consensus 391 -~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 391 -FDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred -hcCCCHHHHHHHHHHHHHHHhh
Confidence 2344557888888887766554
No 59
>CHL00176 ftsH cell division protein; Validated
Probab=99.76 E-value=1.1e-17 Score=193.43 Aligned_cols=219 Identities=24% Similarity=0.323 Sum_probs=154.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|.+++|+.+.+.+.. .+..... + .. + ...+.++||+||||||||++|+++|..++.|
T Consensus 184 dv~G~~~~k~~l~eiv~~-lk~~~~~-~---~~---g------------~~~p~gVLL~GPpGTGKT~LAralA~e~~~p 243 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSF-LKKPERF-T---AV---G------------AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP 243 (638)
T ss_pred hccChHHHHHHHHHHHHH-HhCHHHH-h---hc---c------------CCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999988742 1111000 0 00 0 0124789999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..++|.. ...++.+|..+.. ..++||||||||.+...|+....+.+...+.+++.||..|+|..
T Consensus 244 ~i~is~s~f~-~~~~g~~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 244 FFSISGSEFV-EMFVGVG-AARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred eeeccHHHHH-HHhhhhh-HHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 9999999887 5677765 5667888877543 47899999999999877654433444455567888888887421
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
...++++|+++|..+.
T Consensus 318 -------------------~~~~ViVIaaTN~~~~--------------------------------------------- 333 (638)
T CHL00176 318 -------------------GNKGVIVIAATNRVDI--------------------------------------------- 333 (638)
T ss_pred -------------------CCCCeeEEEecCchHh---------------------------------------------
Confidence 1235788888874320
Q ss_pred hhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHH
Q 005670 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 ll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~L 595 (684)
+.|.++ +|||..|.+..++.++..+|++.++.. ....++..+..++.. ..++..++|
T Consensus 334 -----LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--------------~~~~~d~~l~~lA~~--t~G~sgaDL 392 (638)
T CHL00176 334 -----LDAALLRPGRFDRQITVSLPDREGRLDILKVHARN--------------KKLSPDVSLELIARR--TPGFSGADL 392 (638)
T ss_pred -----hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh--------------cccchhHHHHHHHhc--CCCCCHHHH
Confidence 123333 599999999999999999998763221 112335566777774 456678899
Q ss_pred HHHHHHHHHHHH
Q 005670 596 RSLLENILMDAM 607 (684)
Q Consensus 596 r~iIe~~l~~al 607 (684)
+++++++...+.
T Consensus 393 ~~lvneAal~a~ 404 (638)
T CHL00176 393 ANLLNEAAILTA 404 (638)
T ss_pred HHHHHHHHHHHH
Confidence 999988766554
No 60
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.75 E-value=8.2e-18 Score=186.96 Aligned_cols=249 Identities=18% Similarity=0.329 Sum_probs=162.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.+++++|++||||+.+|++++.... .||+.++|..+.+ +.++|+..+. +........+.++.+.+|+|||||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGA-FTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCC-cCCCccCCCCceeECCCCEEEEec
Confidence 6899999999999999999998874 6899999998752 1222322110 001111223446667899999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccC
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.|+.. +|..|+++++...+. +.+....+ ..++.+|++++ .++++.+.++
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~-------~~~~~~~~---~~~~rii~~~~-~~l~~~~~~~---- 292 (445)
T TIGR02915 242 IGDLPLN--------------LQAKLLRFLQERVIE-------RLGGREEI---PVDVRIVCATN-QDLKRMIAEG---- 292 (445)
T ss_pred hhhCCHH--------------HHHHHHHHHhhCeEE-------eCCCCcee---eeceEEEEecC-CCHHHHHHcC----
Confidence 9999987 999999999843221 11111111 23567777766 4454444333
Q ss_pred CCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccce-EEEccccCH--HHHHHHHhchHHHHHHHH
Q 005670 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLse--eel~~Il~~~l~~L~kq~ 560 (684)
.|+++|+.|+.. .|.++||.+ +|+..+++..+..+..++
T Consensus 293 --------------------------------------~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~ 334 (445)
T TIGR02915 293 --------------------------------------TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFAREL 334 (445)
T ss_pred --------------------------------------CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHh
Confidence 366777788754 488899986 778888776555443332
Q ss_pred HHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCC-CCCcc
Q 005670 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED-RGCGA 639 (684)
Q Consensus 561 ~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~-~~~~~ 639 (684)
.+ -...+++++++.|.. |+|++|.|+|+++|++++..+-.. .|+.+.+.... .....
T Consensus 335 ~~------~~~~~~~~a~~~L~~--~~wpgNvreL~~~i~~a~~~~~~~--------------~i~~~~l~~~~~~~~~~ 392 (445)
T TIGR02915 335 KR------KTKGFTDDALRALEA--HAWPGNVRELENKVKRAVIMAEGN--------------QITAEDLGLDARERAET 392 (445)
T ss_pred CC------CCCCCCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhCCCC--------------cccHHHcCCcccccccc
Confidence 11 135799999999999 789999999999999988643211 12222221000 00000
Q ss_pred eEEcCcchHHHHHHHHHHhhhhhccccCCCCCC
Q 005670 640 KILYGKGALDRYLAQHKRKDLETNVAGADGEPE 672 (684)
Q Consensus 640 ~i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~ 672 (684)
. ....+..++++.|++.|...+..++|+..
T Consensus 393 ~---~~~~l~~~~~~~E~~~i~~al~~~~gn~~ 422 (445)
T TIGR02915 393 P---LEVNLREVRERAEREAVRKAIARVDGNIA 422 (445)
T ss_pred c---cccCHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 0 01246667788999999999999988863
No 61
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.74 E-value=1.2e-17 Score=187.09 Aligned_cols=198 Identities=19% Similarity=0.321 Sum_probs=137.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.++++.|++|||||++|++++... +.||+.+||+.+.+ +..+|+..+.. ........+.++.+.+|+|||||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~-~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF-TGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCC-CCCCcCCCCCeeECCCCEEEEec
Confidence 689999999999999999999987 46999999998752 12223221100 00001113345667889999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCc-eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~-~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|+.++.. +|..|+++++.. ...+ +....+. .++.+|++++ .++++.+.++
T Consensus 241 i~~l~~~--------------~q~~L~~~l~~~~~~~~--------~~~~~~~---~~~rii~~~~-~~l~~~~~~~--- 291 (469)
T PRK10923 241 IGDMPLD--------------VQTRLLRVLADGQFYRV--------GGYAPVK---VDVRIIAATH-QNLEQRVQEG--- 291 (469)
T ss_pred cccCCHH--------------HHHHHHHHHhcCcEEeC--------CCCCeEE---eeEEEEEeCC-CCHHHHHHcC---
Confidence 9999987 999999999832 2221 1111122 3577777776 3444444322
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc-eEEEccccCH--HHHHHHHhchHHHHHHH
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQ 559 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d-~iI~f~pLse--eel~~Il~~~l~~L~kq 559 (684)
.|+++|++|+. ..|.++||.+ +|+..++...+..+.++
T Consensus 292 ---------------------------------------~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~ 332 (469)
T PRK10923 292 ---------------------------------------KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARE 332 (469)
T ss_pred ---------------------------------------CchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHH
Confidence 37788899985 5699999987 78888887754444332
Q ss_pred HHHHHHhcCcc-ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 005670 560 YRKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 560 ~~~~~~~~gi~-l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
+ +.. ..++++|++.|.+ |+|++|.|+|+++|++++..+
T Consensus 333 ~-------~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 333 L-------GVEAKLLHPETEAALTR--LAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred c-------CCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhC
Confidence 2 323 3699999999999 789999999999999988754
No 62
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-17 Score=169.28 Aligned_cols=175 Identities=25% Similarity=0.386 Sum_probs=133.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhH--hhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRI--YNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|-|.+-.|+.+.++|..+..+. +.... --||+++|||||||||||+||+++|+...
T Consensus 156 diggld~qkqeireavelplt~~~ly~qig---------------------idpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIG---------------------IDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhC---------------------CCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 37889999999999997544321 11111 12358999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHH--
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML-- 433 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~L-- 433 (684)
..|+++.++++. .+|.|++ ...++++|+.+.. +.++||||||||.+..+|-....+.|.+ +|..|+++|
T Consensus 215 a~firvvgsefv-qkylgeg-prmvrdvfrlake----napsiifideidaiatkrfdaqtgadre---vqril~ellnq 285 (408)
T KOG0727|consen 215 AAFIRVVGSEFV-QKYLGEG-PRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADRE---VQRILIELLNQ 285 (408)
T ss_pred hheeeeccHHHH-HHHhccC-cHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHH---HHHHHHHHHHh
Confidence 999999999999 6999998 6899999988765 4889999999999998887766666644 666666665
Q ss_pred -cCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhh
Q 005670 434 -EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 434 -Eg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~ 512 (684)
||. + .+.|+-+||++|..|
T Consensus 286 mdgf-----------d--------q~~nvkvimatnrad----------------------------------------- 305 (408)
T KOG0727|consen 286 MDGF-----------D--------QTTNVKVIMATNRAD----------------------------------------- 305 (408)
T ss_pred ccCc-----------C--------cccceEEEEecCccc-----------------------------------------
Confidence 432 1 245788999998543
Q ss_pred ccchhhhhhcCccccc--cccceEEEccccCHHHHHHHHhc
Q 005670 513 VESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 513 v~~~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~ 551 (684)
.+.|.|+ +|+|..|.|+-.+..+.+-++..
T Consensus 306 ---------tldpallrpgrldrkiefplpdrrqkrlvf~t 337 (408)
T KOG0727|consen 306 ---------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 337 (408)
T ss_pred ---------ccCHhhcCCccccccccCCCCchhhhhhhHHh
Confidence 1223333 79999999997777776666544
No 63
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.74 E-value=4.1e-17 Score=175.35 Aligned_cols=176 Identities=13% Similarity=0.200 Sum_probs=127.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchH-hhhcCcEEEEecccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v-~~a~~gILfIDEIDkl~ 408 (684)
|..++||||||||||++|+++|+.++.+|+.+++.++. ++|+|+. ++.++++|..|.... .+.++|||||||||.+.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 58999999999999999999999999999999999998 8999998 899999999875432 24579999999999999
Q ss_pred cccccccCCCCCcchHHHHHHHHHHcCc-eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 409 KKAESLNISRDVSGEGVQQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg~-~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
+.++. .+..+..+.+...||.+||+- .+.+ .|..+. .-....+.+|+|||..+
T Consensus 226 g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l--~G~w~~------~~~~~~V~VIaTTNrpd---------------- 279 (413)
T PLN00020 226 GRFGT--TQYTVNNQMVNGTLMNIADNPTNVSL--GGDWRE------KEEIPRVPIIVTGNDFS---------------- 279 (413)
T ss_pred CCCCC--CCcchHHHHHHHHHHHHhcCCccccc--cccccc------cccCCCceEEEeCCCcc----------------
Confidence 87652 223333344557899999841 1111 110000 01244588888988432
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
.+.|+|++ |||..+ ..++.++..+|++.++ +
T Consensus 280 ----------------------------------~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~-----------r 312 (413)
T PLN00020 280 ----------------------------------TLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIF-----------R 312 (413)
T ss_pred ----------------------------------cCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHh-----------c
Confidence 24577776 999865 3688999999987521 1
Q ss_pred hcCccccccHHHHHHHHHh
Q 005670 566 MNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~ 584 (684)
...++.+.+..|++.
T Consensus 313 ----~~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 313 ----DDGVSREDVVKLVDT 327 (413)
T ss_pred ----cCCCCHHHHHHHHHc
Confidence 234566777777775
No 64
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.73 E-value=4.3e-17 Score=181.12 Aligned_cols=219 Identities=21% Similarity=0.332 Sum_probs=149.6
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|.|++.+++.+.+++..+..+ ++.... ..++.++||+||||||||++|+++|+.++
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g---------------------i~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIG---------------------IKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcC---------------------CCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4799999999999999744332 111110 01247899999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++++++. ..|+|.. ...++.+|..+.. ..++||||||||.+...+.....+.+.....+...||..|+|
T Consensus 243 ~~fi~V~~seL~-~k~~Ge~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 243 ATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred CCEEEEecchhh-hhhcchH-HHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 999999999987 5788887 6778888876543 468999999999998765433222222212233344444453
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ...++.+|+++|..+
T Consensus 317 ~~-------------------~~~~V~VI~ATNr~d-------------------------------------------- 333 (438)
T PTZ00361 317 FD-------------------SRGDVKVIMATNRIE-------------------------------------------- 333 (438)
T ss_pred hc-------------------ccCCeEEEEecCChH--------------------------------------------
Confidence 10 123578888887321
Q ss_pred hhhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH-HHHHHHHhcCCCCCCH
Q 005670 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGA 592 (684)
Q Consensus 516 ~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e-Al~~La~~a~~~~~GA 592 (684)
.+.|.++ +||+..|.|++++.++..+|++..+. .+.++++ .++.++. ...++.+
T Consensus 334 ------~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~---------------k~~l~~dvdl~~la~--~t~g~sg 390 (438)
T PTZ00361 334 ------SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS---------------KMTLAEDVDLEEFIM--AKDELSG 390 (438)
T ss_pred ------HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh---------------cCCCCcCcCHHHHHH--hcCCCCH
Confidence 1234444 69999999999999999999875211 1222222 3455665 3556777
Q ss_pred HHHHHHHHHHHHHHHhc
Q 005670 593 RGLRSLLENILMDAMYE 609 (684)
Q Consensus 593 R~Lr~iIe~~l~~al~e 609 (684)
..|+.++..+...++.+
T Consensus 391 AdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 391 ADIKAICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88999988877776643
No 65
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.73 E-value=2.8e-17 Score=192.86 Aligned_cols=271 Identities=16% Similarity=0.258 Sum_probs=172.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|++.+++.+.+.+..- .....+|||+|++|||||++|++|+...
T Consensus 377 ~liG~S~~~~~~~~~~~~~------------------------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~ 426 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMV------------------------------AQSDSTVLILGETGTGKELIARAIHNLSGRN 426 (686)
T ss_pred ceeecCHHHHHHHHHHHHH------------------------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 3788888888887776411 0112689999999999999999999876
Q ss_pred CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 355 NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 355 ~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+.||+.+||..+.+ +.++|+..+. +........+.++.+.+|+||||||+.++.. +|..|+
T Consensus 427 ~~~~v~i~c~~~~~~~~~~~lfg~~~~~-~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~ 491 (686)
T PRK15429 427 NRRMVKMNCAAMPAGLLESDLFGHERGA-FTGASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLL 491 (686)
T ss_pred CCCeEEEecccCChhHhhhhhcCccccc-ccccccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHH
Confidence 46999999997752 2334432111 0000011123455677899999999999987 999999
Q ss_pred HHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHH
Q 005670 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll 510 (684)
.+|+...+. ..+..+.+ ..++.+|++++ .++++.+..+
T Consensus 492 ~~l~~~~~~-------~~g~~~~~---~~~~RiI~~t~-~~l~~~~~~~------------------------------- 529 (686)
T PRK15429 492 RVLQEQEFE-------RLGSNKII---QTDVRLIAATN-RDLKKMVADR------------------------------- 529 (686)
T ss_pred HHHHhCCEE-------eCCCCCcc---cceEEEEEeCC-CCHHHHHHcC-------------------------------
Confidence 999733221 01111111 23466777766 3444444322
Q ss_pred hhccchhhhhhcCccccccccceE-EEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCccc-cccHHHHHHHHHhcC
Q 005670 511 ETVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKL-HFTENALRLIAKKAI 586 (684)
Q Consensus 511 ~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~l-~~s~eAl~~La~~a~ 586 (684)
.|+++|+.|+... |.++||.+ +|+..+++..+..+.+++ +..+ .+++++++.|.. |
T Consensus 530 -----------~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~~~s~~al~~L~~--y 589 (686)
T PRK15429 530 -----------EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM-------GRNIDSIPAETLRTLSN--M 589 (686)
T ss_pred -----------cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc-------CCCCCCcCHHHHHHHHh--C
Confidence 4677888888764 89999987 778887776544443332 3344 599999999999 7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCCCCCcceEEcCcchHHHHHHHHHHhhhhhcccc
Q 005670 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKDLETNVAG 666 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~~~~~~~i~~~~g~l~~~l~~~~~~~~~~~~~~ 666 (684)
+|++|+|+|+++|++++...-... |... +. +............ ..+ ...++.|+..|.+.++.
T Consensus 590 ~WPGNvrEL~~~i~~a~~~~~~~~---------i~~~-l~-~~~~~~~~~~~~~-----~~~-~~~~~~Er~~I~~aL~~ 652 (686)
T PRK15429 590 EWPGNVRELENVIERAVLLTRGNV---------LQLS-LP-DITLPEPETPPAA-----TVV-AQEGEDEYQLIVRVLKE 652 (686)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCc---------cccc-Cc-hhhcccccccccc-----ccc-ccHHHHHHHHHHHHHHH
Confidence 899999999999999887432111 1110 00 0000000000000 011 12267888999999999
Q ss_pred CCCCCC
Q 005670 667 ADGEPE 672 (684)
Q Consensus 667 ~~~~~~ 672 (684)
++|+..
T Consensus 653 ~~gn~~ 658 (686)
T PRK15429 653 TNGVVA 658 (686)
T ss_pred cCCCcc
Confidence 999864
No 66
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.72 E-value=3.5e-17 Score=182.18 Aligned_cols=251 Identities=16% Similarity=0.262 Sum_probs=160.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.++|+.|++||||+++|++++... +.||+.++|..+.+ +.++|+..+. +........+.++.+.+|+|||||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGA-FTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCC-CCCCCCCCCCceEECCCCEEEEec
Confidence 689999999999999999998876 46999999998752 1222321100 000001112345567889999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccC
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.++.. +|..|+.+++...+. ..+....+. .++.+|++++ .++++.+.++.
T Consensus 246 i~~l~~~--------------~q~~L~~~l~~~~~~-------~~~~~~~~~---~~~rii~~t~-~~l~~~~~~g~--- 297 (457)
T PRK11361 246 IGEMPLV--------------LQAKLLRILQEREFE-------RIGGHQTIK---VDIRIIAATN-RDLQAMVKEGT--- 297 (457)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEE-------eCCCCceee---eceEEEEeCC-CCHHHHHHcCC---
Confidence 9999987 999999999843221 111111122 3466777776 45555554432
Q ss_pred CCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccce-EEEccccCH--HHHHHHHhchHHHHHHHH
Q 005670 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLse--eel~~Il~~~l~~L~kq~ 560 (684)
|+++++.|+.. .|.++||.+ +|+..++...+..+.+++
T Consensus 298 ---------------------------------------~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~ 338 (457)
T PRK11361 298 ---------------------------------------FREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSEN 338 (457)
T ss_pred ---------------------------------------chHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHc
Confidence 55667777744 488888885 777777766444443322
Q ss_pred HHHHHhcCcc-ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCC----C-C
Q 005670 561 RKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGS----E-D 634 (684)
Q Consensus 561 ~~~~~~~gi~-l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~----~-~ 634 (684)
+.. ..+++++++.|.. |+|++|+|+|+++|++++..+-... |+.+++.. . .
T Consensus 339 -------~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~~~~~~~~~~~~~~--------------i~~~~l~~~~~~~~~ 395 (457)
T PRK11361 339 -------QRDIIDIDPMAMSLLTA--WSWPGNIRELSNVIERAVVMNSGPI--------------IFSEDLPPQIRQPVC 395 (457)
T ss_pred -------CCCCCCcCHHHHHHHHc--CCCCCcHHHHHHHHHHHHHhCCCCc--------------ccHHHChHhhhcccc
Confidence 223 5799999999999 7899999999999999886431111 11111110 0 0
Q ss_pred CCCcc-eEEcCcchHHHHHHHHHHhhhhhccccCCCCCC
Q 005670 635 RGCGA-KILYGKGALDRYLAQHKRKDLETNVAGADGEPE 672 (684)
Q Consensus 635 ~~~~~-~i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~ 672 (684)
..... ........+...+++.|++.|.+.++.++|+..
T Consensus 396 ~~~~~~~~~~~~~~l~~~~~~~E~~~i~~al~~~~gn~~ 434 (457)
T PRK11361 396 NAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRT 434 (457)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHhCCCHH
Confidence 00000 000011256678899999999999999988863
No 67
>PRK15115 response regulator GlrR; Provisional
Probab=99.72 E-value=3.8e-17 Score=181.57 Aligned_cols=246 Identities=17% Similarity=0.244 Sum_probs=158.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.++++.|++|||||++|+++++.. +.||+.++|..+.+ ...+|+..+ .+........+.++.+.+|+|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~-~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARG-AFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcC-CCCCCccCCCCcEEECCCCEEEEEc
Confidence 689999999999999999999987 46999999998752 111221100 0000011123345667889999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCce-eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTV-VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~-v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|+.|+.. +|..|++.|+... ..+ +....+ ..++.+|++++ .++++.+.++
T Consensus 237 i~~l~~~--------------~q~~L~~~l~~~~~~~~--------g~~~~~---~~~~rii~~~~-~~l~~~~~~~--- 287 (444)
T PRK15115 237 IGDMPAP--------------LQVKLLRVLQERKVRPL--------GSNRDI---DIDVRIISATH-RDLPKAMARG--- 287 (444)
T ss_pred cccCCHH--------------HHHHHHHHHhhCCEEeC--------CCCcee---eeeEEEEEeCC-CCHHHHHHcC---
Confidence 9999987 9999999998322 221 111111 22577887776 3465555443
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccce-EEEccccCH--HHHHHHHhchHHHHHHH
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQ 559 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLse--eel~~Il~~~l~~L~kq 559 (684)
.|+++|+.|+.. .|.++||.+ +|+..+++..+..+..+
T Consensus 288 ---------------------------------------~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~ 328 (444)
T PRK15115 288 ---------------------------------------EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAER 328 (444)
T ss_pred ---------------------------------------CccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHH
Confidence 356667777754 478888876 67888877755444332
Q ss_pred HHHHHHhcCcc-ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCCCCCc
Q 005670 560 YRKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCG 638 (684)
Q Consensus 560 ~~~~~~~~gi~-l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~~~~~ 638 (684)
+ +.. ..++++|++.|.. |+|++|.|+|+++|++++..+ +. ..|+.+.+.....+..
T Consensus 329 ~-------~~~~~~~~~~a~~~L~~--~~WpgNvreL~~~i~~~~~~~--~~------------~~i~~~~l~~~~~~~~ 385 (444)
T PRK15115 329 H-------KPFVRAFSTDAMKRLMT--ASWPGNVRQLVNVIEQCVALT--SS------------PVISDALVEQALEGEN 385 (444)
T ss_pred h-------CCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhC--CC------------CccChhhhhhhhcccc
Confidence 2 222 3599999999999 789999999999999987642 11 0122222211000000
Q ss_pred ceEEcCcchHHHHHHHHHHhhhhhccccCCCCCC
Q 005670 639 AKILYGKGALDRYLAQHKRKDLETNVAGADGEPE 672 (684)
Q Consensus 639 ~~i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~ 672 (684)
.....+...+++.|+..|.+.+..++|+..
T Consensus 386 ----~~~~~~~~~~~~~E~~~i~~al~~~~gn~~ 415 (444)
T PRK15115 386 ----TALPTFVEARNQFELNYLRKLLQITKGNVT 415 (444)
T ss_pred ----cccccHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 001134555678899999999999988863
No 68
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.1e-17 Score=167.64 Aligned_cols=214 Identities=22% Similarity=0.304 Sum_probs=153.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|-|..+.++.|.+.|..+......... . + --||.+||+|||||||||++|+++|+..+.-
T Consensus 178 dvggckeqieklrevve~pll~perfv~----l---g------------idppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVN----L---G------------IDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhh----c---C------------CCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 5889999999999999765443211110 0 0 0235899999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+++-.++++ .+|+|+. ...++++|+.++. .+.||||+||||.+...|-..+.++|. .+|..+|+++.
T Consensus 239 firvigselv-qkyvgeg-armvrelf~mart----kkaciiffdeidaiggarfddg~ggdn---evqrtmleli~--- 306 (435)
T KOG0729|consen 239 FIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGDN---EVQRTMLELIN--- 306 (435)
T ss_pred EEeehhHHHH-HHHhhhh-HHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCcH---HHHHHHHHHHH---
Confidence 9999999999 6999998 8999999998875 366999999999999887665545443 48888888885
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
+-.-++++| |+-++|++|..+
T Consensus 307 -----qldgfdprg--------nikvlmatnrpd---------------------------------------------- 327 (435)
T KOG0729|consen 307 -----QLDGFDPRG--------NIKVLMATNRPD---------------------------------------------- 327 (435)
T ss_pred -----hccCCCCCC--------CeEEEeecCCCC----------------------------------------------
Confidence 222245555 577888888543
Q ss_pred hhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHH-HHHHHHhcCCCCCCHHH
Q 005670 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 ll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eA-l~~La~~a~~~~~GAR~ 594 (684)
.+.|.|+ +|+|..|.|.-++.+-...|++.+...+ .++.+. .+.|+.. +...+| -+
T Consensus 328 ----tldpallrpgrldrkvef~lpdlegrt~i~kihaksm---------------sverdir~ellarl-cpnstg-ae 386 (435)
T KOG0729|consen 328 ----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM---------------SVERDIRFELLARL-CPNSTG-AE 386 (435)
T ss_pred ----CcCHhhcCCcccccceeccCCcccccceeEEEecccc---------------ccccchhHHHHHhh-CCCCcc-hH
Confidence 0122222 7889889998888888888887643332 222222 2445554 455555 47
Q ss_pred HHHHHHHH
Q 005670 595 LRSLLENI 602 (684)
Q Consensus 595 Lr~iIe~~ 602 (684)
|+++.-.+
T Consensus 387 irsvctea 394 (435)
T KOG0729|consen 387 IRSVCTEA 394 (435)
T ss_pred HHHHHHHh
Confidence 77776543
No 69
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.71 E-value=1.4e-16 Score=168.40 Aligned_cols=239 Identities=20% Similarity=0.291 Sum_probs=161.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc----ccccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT----QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~----~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.++|+.|++||||.++|++-+... ..||+-+||+.+. ++..+|+.++ -+...+.++.+.+|.+|+||
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg------~~gk~GffE~AngGTVlLDe 301 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG------DEGKKGFFEQANGGTVLLDE 301 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCC------CCCccchhhhccCCeEEeeh
Confidence 689999999999999999998877 5699999999876 4556666543 23345678889999999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|..+++. .|.+||+.|. |+.-+| +....+.+| +.+||++. .+|.+++.++.++
T Consensus 302 IgEmSp~--------------lQaKLLRFL~DGtFRRV--------Gee~Ev~vd---VRVIcatq-~nL~~lv~~g~fR 355 (511)
T COG3283 302 IGEMSPR--------------LQAKLLRFLNDGTFRRV--------GEDHEVHVD---VRVICATQ-VNLVELVQKGKFR 355 (511)
T ss_pred hhhcCHH--------------HHHHHHHHhcCCceeec--------CCcceEEEE---EEEEeccc-ccHHHHHhcCchH
Confidence 9999998 9999999996 655544 233334454 66777654 7899999988887
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHH
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~ 562 (684)
.++.|+.++-.. -.|+|+.|-++ +.-+++.++.++.++
T Consensus 356 eDLfyRLNVLtl----------------------------~~PpLRer~~d-----------i~pL~e~Fv~q~s~e--- 393 (511)
T COG3283 356 EDLFYRLNVLTL----------------------------NLPPLRERPQD-----------IMPLAELFVQQFSDE--- 393 (511)
T ss_pred HHHHHHhheeee----------------------------cCCccccCccc-----------chHHHHHHHHHHHHH---
Confidence 777776664221 12455555543 344444322222222
Q ss_pred HHHhcCc-cccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEE-ecccccCCCCCCCcce
Q 005670 563 MFQMNGV-KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVV-VDEEAVGSEDRGCGAK 640 (684)
Q Consensus 563 ~~~~~gi-~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~-id~e~v~~~~~~~~~~ 640 (684)
+ ++ .-+++++.+.+|.+ |.|++++|+|+|+|-+++...-.... .|..+. .+.++.. ..-
T Consensus 394 -l---g~p~pkl~~~~~~~L~~--y~WpGNVRqL~N~iyRA~s~~Eg~~l-------~i~~i~Lp~~~~~~------~~~ 454 (511)
T COG3283 394 -L---GVPRPKLAADLLTVLTR--YAWPGNVRQLKNAIYRALTLLEGYEL-------RIEDILLPDYDAAT------VVG 454 (511)
T ss_pred -h---CCCCCccCHHHHHHHHH--cCCCccHHHHHHHHHHHHHHhccCcc-------chhhcccCCccccc------ccc
Confidence 1 22 45799999999999 78999999999999887764321111 111111 1111100 011
Q ss_pred EEcCcchHHHHHHHHHHhhhhh
Q 005670 641 ILYGKGALDRYLAQHKRKDLET 662 (684)
Q Consensus 641 i~~~~g~l~~~l~~~~~~~~~~ 662 (684)
-...+|.|+..++.+|+...+.
T Consensus 455 ~~~~~gsLdei~~~fE~~VL~r 476 (511)
T COG3283 455 EDALEGSLDEIVSRFERSVLTR 476 (511)
T ss_pred hhhccCCHHHHHHHHHHHHHHH
Confidence 1234789999999999887655
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.71 E-value=2.1e-16 Score=172.27 Aligned_cols=218 Identities=26% Similarity=0.360 Sum_probs=147.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|.|.+++++.|.+++..+..+...... .| ..++.++||+||||||||++|+++|+.++.+
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~----~g---------------~~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEE----VG---------------IEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHh----cC---------------CCCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 5899999999999998644332110000 00 0124789999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHH---c
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---E 434 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~L---E 434 (684)
|+.+.++++. ..|+|.. ...++.++..+. ...++||||||+|.+...+.....+.+. .++..|..++ +
T Consensus 184 ~~~v~~~~l~-~~~~g~~-~~~i~~~f~~a~----~~~p~il~iDEiD~l~~~~~~~~~~~~~---~~~~~l~~ll~~ld 254 (364)
T TIGR01242 184 FIRVVGSELV-RKYIGEG-ARLVREIFELAK----EKAPSIIFIDEIDAIAAKRTDSGTSGDR---EVQRTLMQLLAELD 254 (364)
T ss_pred EEecchHHHH-HHhhhHH-HHHHHHHHHHHH----hcCCcEEEhhhhhhhccccccCCCCccH---HHHHHHHHHHHHhh
Confidence 9999988876 5778876 566777776543 2367899999999998765433222222 2455555554 3
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
+. -...++.||+|+|..+
T Consensus 255 ~~-------------------~~~~~v~vI~ttn~~~------------------------------------------- 272 (364)
T TIGR01242 255 GF-------------------DPRGNVKVIAATNRPD------------------------------------------- 272 (364)
T ss_pred CC-------------------CCCCCEEEEEecCChh-------------------------------------------
Confidence 21 0123578888888321
Q ss_pred chhhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccH-HHHHHHHHhcCCCCCC
Q 005670 515 SSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTG 591 (684)
Q Consensus 515 ~~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~-eAl~~La~~a~~~~~G 591 (684)
.+.|.++ +||+.+|.++.++.++..+|++.... ...+.+ ..++.+++. ..++.
T Consensus 273 -------~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~---------------~~~l~~~~~~~~la~~--t~g~s 328 (364)
T TIGR01242 273 -------ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTR---------------KMKLAEDVDLEAIAKM--TEGAS 328 (364)
T ss_pred -------hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHh---------------cCCCCccCCHHHHHHH--cCCCC
Confidence 1223444 59999999999999999999865211 111111 235667774 56778
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 005670 592 ARGLRSLLENILMDAMYE 609 (684)
Q Consensus 592 AR~Lr~iIe~~l~~al~e 609 (684)
++.|+.++..+...++.+
T Consensus 329 g~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 329 GADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999888877654
No 71
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.70 E-value=1.1e-16 Score=178.53 Aligned_cols=198 Identities=19% Similarity=0.314 Sum_probs=138.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.++++.|++||||+++|+++++.. +.||+.+||..+.+ +..+|+..+. +........+.++.+.+|+|||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGA-FTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCC-CCCcccCCCCcEEECCCCeEEEEc
Confidence 689999999999999999999886 46899999988752 1223322111 001111122335567789999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCc-eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~-~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|+.++.. +|..|+++|+.. ...+ +....+.+ ++.+|++++ .++++.+..+
T Consensus 237 i~~l~~~--------------~q~~ll~~l~~~~~~~~--------~~~~~~~~---~~rii~~~~-~~l~~~~~~~--- 287 (463)
T TIGR01818 237 IGDMPLD--------------AQTRLLRVLADGEFYRV--------GGRTPIKV---DVRIVAATH-QNLEALVRQG--- 287 (463)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEEEC--------CCCceeee---eeEEEEeCC-CCHHHHHHcC---
Confidence 9999987 999999999732 2221 11112223 455777765 4455444332
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccce-EEEccccC--HHHHHHHHhchHHHHHHH
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTEPKNALGKQ 559 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLs--eeel~~Il~~~l~~L~kq 559 (684)
.|+++|+.|+.. .|.++||. .+|+..++...+..+.++
T Consensus 288 ---------------------------------------~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~ 328 (463)
T TIGR01818 288 ---------------------------------------KFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARE 328 (463)
T ss_pred ---------------------------------------CcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHH
Confidence 366788888875 69999999 588998888755554333
Q ss_pred HHHHHHhcCcc-ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 005670 560 YRKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 560 ~~~~~~~~gi~-l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
+ +.. ..++++|++.|.. |.|++|.|+|++++++++..+
T Consensus 329 ~-------~~~~~~~~~~a~~~L~~--~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 329 L-------DVEPKLLDPEALERLKQ--LRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred h-------CCCCCCcCHHHHHHHHh--CCCCChHHHHHHHHHHHHHhC
Confidence 2 222 4699999999999 689999999999999988754
No 72
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.7e-16 Score=169.07 Aligned_cols=226 Identities=20% Similarity=0.289 Sum_probs=158.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
|-|.+.+|+.|.+.|..+.++... .....+..++.+|||+||||||||++|+++|++.+.+|
T Consensus 94 IggLe~v~~~L~e~VilPlr~pel------------------F~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f 155 (386)
T KOG0737|consen 94 IGGLEEVKDALQELVILPLRRPEL------------------FAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF 155 (386)
T ss_pred ccchHHHHHHHHHHHhhcccchhh------------------hcccccccCCccceecCCCCchHHHHHHHHHHHcCCCc
Confidence 789999999999999765554222 22223444679999999999999999999999999999
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCcee
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.++++.++ ++|+|+. ++.+..+|.-+.. -+|+||||||+|.+...|.. +..+....+.+.+...-||-..
T Consensus 156 Inv~~s~lt-~KWfgE~-eKlv~AvFslAsK----l~P~iIFIDEvds~L~~R~s---~dHEa~a~mK~eFM~~WDGl~s 226 (386)
T KOG0737|consen 156 INVSVSNLT-SKWFGEA-QKLVKAVFSLASK----LQPSIIFIDEVDSFLGQRRS---TDHEATAMMKNEFMALWDGLSS 226 (386)
T ss_pred ceeeccccc-hhhHHHH-HHHHHHHHhhhhh----cCcceeehhhHHHHHhhccc---chHHHHHHHHHHHHHHhccccC
Confidence 999999999 6999988 8899999887663 48999999999999887621 1111122355556665564221
Q ss_pred eccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhh
Q 005670 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dl 518 (684)
+. ...++++.++|..- |
T Consensus 227 ---------~~--------~~rVlVlgATNRP~---------------------------------------------D- 243 (386)
T KOG0737|consen 227 ---------KD--------SERVLVLGATNRPF---------------------------------------------D- 243 (386)
T ss_pred ---------CC--------CceEEEEeCCCCCc---------------------------------------------c-
Confidence 11 11255555555220 1
Q ss_pred hhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHH
Q 005670 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 l~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~i 598 (684)
+...+++|++..+.+.-++.++..+|++..+ +...+.-.+ -+..++. .+.++..+.|+++
T Consensus 244 ----lDeAiiRR~p~rf~V~lP~~~qR~kILkviL-----------k~e~~e~~v---D~~~iA~--~t~GySGSDLkel 303 (386)
T KOG0737|consen 244 ----LDEAIIRRLPRRFHVGLPDAEQRRKILKVIL-----------KKEKLEDDV---DLDEIAQ--MTEGYSGSDLKEL 303 (386)
T ss_pred ----HHHHHHHhCcceeeeCCCchhhHHHHHHHHh-----------cccccCccc---CHHHHHH--hcCCCcHHHHHHH
Confidence 2234667888888888888889999987621 112222222 2456666 4677888999999
Q ss_pred HHHHHHHHHhcCCCcc
Q 005670 599 LENILMDAMYEIPDVR 614 (684)
Q Consensus 599 Ie~~l~~al~e~~~~~ 614 (684)
...+....+-++...+
T Consensus 304 C~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 304 CRLAALRPIRELLVSE 319 (386)
T ss_pred HHHHhHhHHHHHHHhc
Confidence 9888887777665543
No 73
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.69 E-value=3.6e-16 Score=178.31 Aligned_cols=215 Identities=23% Similarity=0.294 Sum_probs=139.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (684)
++||+.+++.+..++..+ .+.++||+||||||||++|+++++.+
T Consensus 67 iiGqs~~i~~l~~al~~~--------------------------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~ 114 (531)
T TIGR02902 67 IIGQEEGIKALKAALCGP--------------------------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNP 114 (531)
T ss_pred eeCcHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 799999999888665311 12689999999999999999998753
Q ss_pred ------CCCEEEEecccc--ccc----ccccchhHHHH--HHH------HhcccchHhhhcCcEEEEecccccccccccc
Q 005670 355 ------NVPFVIADATTL--TQA----RYVGEDVESIL--YKL------LTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 355 ------~~pfv~i~~s~l--~~s----~yvG~~~~~~l--~~l------~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~ 414 (684)
+.+|+.+||+.. .+. ..+|....... ... .....+.+..+++++||||||+.|++.
T Consensus 115 ~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~---- 190 (531)
T TIGR02902 115 ASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV---- 190 (531)
T ss_pred CCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH----
Confidence 358999998742 111 11111000000 000 111234566788899999999999987
Q ss_pred cCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeE---------EEeccceEEEeccCcccHHHHHHhccccCCC
Q 005670 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNI---------QIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i---------~id~~niIfI~tgn~~dLe~~i~~r~~~~~l 485 (684)
+|+.||+.||...+.+. .....+.+..+ .--..++.+|++++.. +
T Consensus 191 ----------~q~~LL~~Le~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~-p------------- 244 (531)
T TIGR02902 191 ----------QMNKLLKVLEDRKVFLD--SAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRN-P------------- 244 (531)
T ss_pred ----------HHHHHHHHHHhCeeeec--cccccccCcccccchhhhcccCcccceEEEEEecCC-c-------------
Confidence 99999999985444321 11111110000 0012345566655411 0
Q ss_pred CCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
..+.|++++|+. .+.|++|+.+++.+|++..+..
T Consensus 245 -----------------------------------~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k---------- 278 (531)
T TIGR02902 245 -----------------------------------EEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEK---------- 278 (531)
T ss_pred -----------------------------------ccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHH----------
Confidence 024588888885 6889999999999998763222
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
..+.+++++++.|+.+ .| +.|++.++++.+...+..
T Consensus 279 ---~~i~is~~al~~I~~y--~~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 279 ---IGINLEKHALELIVKY--AS--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred ---cCCCcCHHHHHHHHHh--hh--hHHHHHHHHHHHHHHHhh
Confidence 1467999999999885 45 569999999998765543
No 74
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.3e-17 Score=167.17 Aligned_cols=182 Identities=24% Similarity=0.368 Sum_probs=139.3
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|-|.+..++.+.++|..+..+ .+.... -.||.+|+|||+||||||+||+|+|+...
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemG---------------------ikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMG---------------------IKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcC---------------------CCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 4789999999999999754332 121111 12458999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
+.|+++-.+++. .+|.|.. .+.++++|+.+.. ..++|+||||||.+..+|-..+.+++ +.+|..+|++|+
T Consensus 245 ATFlRvvGseLi-QkylGdG-pklvRqlF~vA~e----~apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELLN- 314 (440)
T KOG0726|consen 245 ATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----HAPSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELLN- 314 (440)
T ss_pred hhhhhhhhHHHH-HHHhccc-hHHHHHHHHHHHh----cCCceEEeehhhhhccccccCCCccH---HHHHHHHHHHHH-
Confidence 999999999999 6999998 7899999998764 58999999999999988766554443 348888888886
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
+-.-++.+++ +-+||++|..+
T Consensus 315 -------QldGFdsrgD--------vKvimATnrie-------------------------------------------- 335 (440)
T KOG0726|consen 315 -------QLDGFDSRGD--------VKVIMATNRIE-------------------------------------------- 335 (440)
T ss_pred -------hccCccccCC--------eEEEEeccccc--------------------------------------------
Confidence 2222444443 77888888332
Q ss_pred hhhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHH
Q 005670 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 516 ~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~ 555 (684)
.+.|.|+ +|||..|.|+-+++....+|++.+-..
T Consensus 336 ------~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~ 371 (440)
T KOG0726|consen 336 ------TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR 371 (440)
T ss_pred ------ccCHhhcCCCccccccccCCCchhhhceeEEEeecc
Confidence 1233333 899999999999999999998765433
No 75
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.67 E-value=5.7e-16 Score=189.54 Aligned_cols=190 Identities=17% Similarity=0.234 Sum_probs=132.2
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccc----------cc------------------------
Q 005670 328 LEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARY----------VG------------------------ 373 (684)
Q Consensus 328 ~~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~y----------vG------------------------ 373 (684)
.+|++|||+||||||||+||+++|..+++||+.++++++.+ .+ +|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~-~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD-NKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh-cccccccccccccccccccccccccccccchhhhhhcc
Confidence 45789999999999999999999999999999999998873 22 11
Q ss_pred -------chhH-HHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCC
Q 005670 374 -------EDVE-SILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGA 445 (684)
Q Consensus 374 -------~~~~-~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~ 445 (684)
.++. ..++.+|+.|. +.+||||||||||.+... + ......+.|+..|+|...
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~--------d-s~~ltL~qLLneLDg~~~------- 1766 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVN--------E-SNYLSLGLLVNSLSRDCE------- 1766 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCC--------c-cceehHHHHHHHhccccc-------
Confidence 1111 23677777665 358999999999999864 1 122247889999984210
Q ss_pred ccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcc
Q 005670 446 RKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIP 525 (684)
Q Consensus 446 ~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~P 525 (684)
....++++||+|||..+ .+.|
T Consensus 1767 ---------~~s~~~VIVIAATNRPD--------------------------------------------------~LDP 1787 (2281)
T CHL00206 1767 ---------RCSTRNILVIASTHIPQ--------------------------------------------------KVDP 1787 (2281)
T ss_pred ---------cCCCCCEEEEEeCCCcc--------------------------------------------------cCCH
Confidence 01245789999988543 1446
Q ss_pred ccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 526 EFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 526 eLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+|+ +|||..|.++.++..+..+++.. + ....++.+.-....++.+|+. +.++.+++|.+++..++
T Consensus 1788 ALLRPGRFDR~I~Ir~Pd~p~R~kiL~I----L-------l~tkg~~L~~~~vdl~~LA~~--T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1788 ALIAPNKLNTCIKIRRLLIPQQRKHFFT----L-------SYTRGFHLEKKMFHTNGFGSI--TMGSNARDLVALTNEAL 1854 (2281)
T ss_pred hHcCCCCCCeEEEeCCCCchhHHHHHHH----H-------HhhcCCCCCcccccHHHHHHh--CCCCCHHHHHHHHHHHH
Confidence 666 59999999998887766665532 1 111222332122235677774 67888899999999888
Q ss_pred HHHHhcC
Q 005670 604 MDAMYEI 610 (684)
Q Consensus 604 ~~al~e~ 610 (684)
.-++.+-
T Consensus 1855 liAirq~ 1861 (2281)
T CHL00206 1855 SISITQK 1861 (2281)
T ss_pred HHHHHcC
Confidence 8777653
No 76
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.3e-17 Score=176.52 Aligned_cols=201 Identities=27% Similarity=0.346 Sum_probs=152.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-CEEEEecccccccccccchhHHHHHHHHhcccchHh----hhcCcEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA----AAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~----~a~~gILfIDEID 405 (684)
.++|||||||||||++||.|.+.++. +--.+|+.++. .+|||++ +..++++|.+|...-. ...-.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 79999999999999999999999975 55668998888 7999998 8899999988764322 2233699999999
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCC
Q 005670 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~l 485 (684)
.+++.|++.+++..+++. +.|+||.-|||.. ...|+++|-.+|..||-+
T Consensus 335 AICKqRGS~~g~TGVhD~-VVNQLLsKmDGVe-------------------qLNNILVIGMTNR~DlID----------- 383 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDT-VVNQLLSKMDGVE-------------------QLNNILVIGMTNRKDLID----------- 383 (744)
T ss_pred HHHHhcCCCCCCCCccHH-HHHHHHHhcccHH-------------------hhhcEEEEeccCchhhHH-----------
Confidence 999999988777766654 8999999999632 134799998888655310
Q ss_pred CCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
+.-++| +|+.+.+.+.-++++-..+|++.+-+++.
T Consensus 384 ----------------------------------EALLRP---GRlEVqmEIsLPDE~gRlQIl~IHT~rMr-------- 418 (744)
T KOG0741|consen 384 ----------------------------------EALLRP---GRLEVQMEISLPDEKGRLQILKIHTKRMR-------- 418 (744)
T ss_pred ----------------------------------HHhcCC---CceEEEEEEeCCCccCceEEEEhhhhhhh--------
Confidence 011445 89998899999999999999987654442
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
.+ .+-=++-.++.||.. ++++..-+|+.++..+...+|.+....
T Consensus 419 e~--~~l~~dVdl~elA~l--TKNfSGAEleglVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 419 EN--NKLSADVDLKELAAL--TKNFSGAELEGLVKSAQSFAMNRHVKA 462 (744)
T ss_pred hc--CCCCCCcCHHHHHHH--hcCCchhHHHHHHHHHHHHHHHhhhcc
Confidence 22 121223345677774 678888899999999998888876543
No 77
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.1e-16 Score=161.23 Aligned_cols=181 Identities=22% Similarity=0.329 Sum_probs=133.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|-|.+..++.|.+++..+..+...... . + -.||.++|+|||||||||++||+.|...+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~----l---g------------i~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFEN----L---G------------IRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHh----c---C------------CCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 4799999999999999654332111110 0 0 1245899999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|...-+..++ ..|+|.. .+.+++.|.-+.. ..++||||||+|.+..+|-.+.-.+| +.+|..+|++|..
T Consensus 233 FLKLAgPQLV-QMfIGdG-AkLVRDAFaLAKE----kaP~IIFIDElDAIGtKRfDSek~GD---REVQRTMLELLNQ-- 301 (424)
T KOG0652|consen 233 FLKLAGPQLV-QMFIGDG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELLNQ-- 301 (424)
T ss_pred HHHhcchHHH-hhhhcch-HHHHHHHHHHhhc----cCCeEEEEechhhhcccccccccccc---HHHHHHHHHHHHh--
Confidence 9988888888 6899988 7899999987654 47899999999999887654332333 4588888888851
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
-+| +. ....+-+|+++|..++
T Consensus 302 ----LDG--Fs--------s~~~vKviAATNRvDi--------------------------------------------- 322 (424)
T KOG0652|consen 302 ----LDG--FS--------SDDRVKVIAATNRVDI--------------------------------------------- 322 (424)
T ss_pred ----hcC--CC--------CccceEEEeecccccc---------------------------------------------
Confidence 011 11 1224677888885541
Q ss_pred hhhhcCccccc--cccceEEEccccCHHHHHHHHhch
Q 005670 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 518 ll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~ 552 (684)
+.|.|+ +|+|..|.|+-++++...+|++.+
T Consensus 323 -----LDPALlRSGRLDRKIEfP~Pne~aRarIlQIH 354 (424)
T KOG0652|consen 323 -----LDPALLRSGRLDRKIEFPHPNEEARARILQIH 354 (424)
T ss_pred -----cCHHHhhcccccccccCCCCChHHHHHHHHHh
Confidence 234443 799999999999999999998753
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.4e-15 Score=169.68 Aligned_cols=185 Identities=24% Similarity=0.309 Sum_probs=129.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (684)
|+||+.+++.|..++..... ++.+||+||+|||||++|+.+|+.+++.
T Consensus 20 vVGQe~iv~~L~~~i~~~ri-------------------------------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~ 68 (484)
T PRK14956 20 VIHQDLAIGALQNALKSGKI-------------------------------GHAYIFFGPRGVGKTTIARILAKRLNCEN 68 (484)
T ss_pred HhChHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence 79999999999988852100 2568999999999999999999999752
Q ss_pred -----------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccc
Q 005670 358 -----------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~ 414 (684)
|+.+|+. .-.|.+ .++++..............|+||||+|.+...
T Consensus 69 ~~~~~pCg~C~sC~~i~~g~~~dviEIdaa-----s~~gVd---~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~---- 136 (484)
T PRK14956 69 PIGNEPCNECTSCLEITKGISSDVLEIDAA-----SNRGIE---NIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ---- 136 (484)
T ss_pred ccCccccCCCcHHHHHHccCCccceeechh-----hcccHH---HHHHHHHHHHhhhhcCCCEEEEEechhhcCHH----
Confidence 2222221 112222 23443332222112235579999999999876
Q ss_pred cCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccc
Q 005670 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~ 494 (684)
.+++||+.||+ ...+++||++++..
T Consensus 137 ----------A~NALLKtLEE---------------------Pp~~viFILaTte~------------------------ 161 (484)
T PRK14956 137 ----------SFNALLKTLEE---------------------PPAHIVFILATTEF------------------------ 161 (484)
T ss_pred ----------HHHHHHHHhhc---------------------CCCceEEEeecCCh------------------------
Confidence 89999999983 12358888877621
Q ss_pred cccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc
Q 005670 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s 574 (684)
. .+.|.+++|+. ++.|.+++.+++.+.+++.+. .. .+.++
T Consensus 162 --------~------------------kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~-----------~E--gi~~e 201 (484)
T PRK14956 162 --------H------------------KIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCK-----------IE--NVQYD 201 (484)
T ss_pred --------h------------------hccHHHHhhhh-eeeecCCCHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 0 24456777775 789999999998887765221 12 46799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++..|++. .+++.|..-++++.++.
T Consensus 202 ~eAL~~Ia~~---S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 202 QEGLFWIAKK---GDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHH
Confidence 9999999996 46778999999988664
No 79
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.66 E-value=1.8e-16 Score=178.53 Aligned_cols=195 Identities=22% Similarity=0.366 Sum_probs=147.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEeccccc----ccccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLT----QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~--~pfv~i~~s~l~----~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
..++|+.|+|||||..+||++++... .||+.+||..+. ++.++|+..+.......+.-.+.++.+.++++|+||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFlde 415 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDE 415 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHH
Confidence 47899999999999999999998874 689999999665 678999886666655556666778899999999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|..|+-. +|..||++|+ |.++.+ + |..+.|| +-+|++ +..||+.++.+++|+
T Consensus 416 Igd~p~~--------------~Qs~LLrVl~e~~v~p~--------g-~~~~~vd---irvi~a-th~dl~~lv~~g~fr 468 (606)
T COG3284 416 IGDMPLA--------------LQSRLLRVLQEGVVTPL--------G-GTRIKVD---IRVIAA-THRDLAQLVEQGRFR 468 (606)
T ss_pred hhhchHH--------------HHHHHHHHHhhCceecc--------C-CcceeEE---EEEEec-cCcCHHHHHHcCCch
Confidence 9999987 9999999996 555544 1 2225777 455555 458999999999888
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCH-HHHHHHHhchHHHHHHHHH
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKNALGKQYR 561 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLse-eel~~Il~~~l~~L~kq~~ 561 (684)
++++|+.+.. +|.+|||.+ .|....+.+ +.+++
T Consensus 469 edLyyrL~~~-----------------------------------------~i~lP~lr~R~d~~~~l~~----~~~~~- 502 (606)
T COG3284 469 EDLYYRLNAF-----------------------------------------VITLPPLRERSDRIPLLDR----ILKRE- 502 (606)
T ss_pred HHHHHHhcCe-----------------------------------------eeccCchhcccccHHHHHH----HHHHc-
Confidence 7777765432 356666654 222222211 11111
Q ss_pred HHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 562 KMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 562 ~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
....+.++++++..|.. |.|++|.|+|.++|+++..
T Consensus 503 -----~~~~~~l~~~~~~~l~~--~~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 503 -----NDWRLQLDDDALARLLA--YRWPGNIRELDNVIERLAA 538 (606)
T ss_pred -----cCCCccCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHH
Confidence 23478999999999998 7899999999999998765
No 80
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=5.5e-15 Score=158.88 Aligned_cols=204 Identities=24% Similarity=0.338 Sum_probs=137.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
++||+++++.+..++.....+ ..++.++||+||||||||++|+++|+.++..+
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~---------------------------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR---------------------------GEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc---------------------------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 699999999998887522110 01236899999999999999999999999888
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCcee
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
...++..+.. ...+..++... ..++||||||||.+... +++.|+..|++..+
T Consensus 80 ~~~~~~~~~~--------~~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~ 131 (328)
T PRK00080 80 RITSGPALEK--------PGDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRL 131 (328)
T ss_pred EEEecccccC--------hHHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcce
Confidence 7776654431 11223333221 25689999999999765 67778888885432
Q ss_pred ecc-CCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 439 NVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 439 ~Ip-~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
.+- .++ ...+.+......+.+|++++..+
T Consensus 132 ~~~l~~~----~~~~~~~~~l~~~~li~at~~~~---------------------------------------------- 161 (328)
T PRK00080 132 DIMIGKG----PAARSIRLDLPPFTLIGATTRAG---------------------------------------------- 161 (328)
T ss_pred eeeeccC----ccccceeecCCCceEEeecCCcc----------------------------------------------
Confidence 210 011 00111222334466777766211
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.+++++||..++.|.+++.+++.+|++..... ..+.++++++++|++++ .+..|-+.+
T Consensus 162 ----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------------~~~~~~~~~~~~ia~~~---~G~pR~a~~ 221 (328)
T PRK00080 162 ----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------------LGVEIDEEGALEIARRS---RGTPRIANR 221 (328)
T ss_pred ----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------------cCCCcCHHHHHHHHHHc---CCCchHHHH
Confidence 2456788999989999999999999998763222 16779999999999963 334588888
Q ss_pred HHHHHHHHHH
Q 005670 598 LLENILMDAM 607 (684)
Q Consensus 598 iIe~~l~~al 607 (684)
+++++..-+.
T Consensus 222 ~l~~~~~~a~ 231 (328)
T PRK00080 222 LLRRVRDFAQ 231 (328)
T ss_pred HHHHHHHHHH
Confidence 8887655443
No 81
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.65 E-value=6.1e-15 Score=156.08 Aligned_cols=202 Identities=22% Similarity=0.340 Sum_probs=131.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
++||+++++.|..++.....+ +. .+.+++|+||||||||++|+++|+.++.++
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~---------------~~------------~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMR---------------QE------------ALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhc---------------CC------------CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 699999999998887421110 00 126899999999999999999999999887
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCcee
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
...+++..... ..+...+... ..+.+||||||+.+.+. .+..|+.+|++...
T Consensus 59 ~~~~~~~~~~~--------~~l~~~l~~~------~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~ 110 (305)
T TIGR00635 59 KITSGPALEKP--------GDLAAILTNL------EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRL 110 (305)
T ss_pred EEeccchhcCc--------hhHHHHHHhc------ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhhe
Confidence 76665433211 1122222211 24579999999999876 77888889874332
Q ss_pred eccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhh
Q 005670 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dl 518 (684)
.+--.. ....+....+...+++|.+++..
T Consensus 111 ~~v~~~---~~~~~~~~~~~~~~~li~~t~~~------------------------------------------------ 139 (305)
T TIGR00635 111 DIVIGK---GPSARSVRLDLPPFTLVGATTRA------------------------------------------------ 139 (305)
T ss_pred eeeecc---CccccceeecCCCeEEEEecCCc------------------------------------------------
Confidence 210000 00011122333345555555421
Q ss_pred hhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHH
Q 005670 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 l~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~i 598 (684)
..+.+++++|+..++.|.+++.+++.++++..+.. ..+.++++++++|++.+ .+.+|.+.++
T Consensus 140 --~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-------------~~~~~~~~al~~ia~~~---~G~pR~~~~l 201 (305)
T TIGR00635 140 --GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-------------LNVEIEPEAALEIARRS---RGTPRIANRL 201 (305)
T ss_pred --cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-------------hCCCcCHHHHHHHHHHh---CCCcchHHHH
Confidence 02456788999888999999999999998753221 15679999999999962 3345777778
Q ss_pred HHHHHH
Q 005670 599 LENILM 604 (684)
Q Consensus 599 Ie~~l~ 604 (684)
++.+..
T Consensus 202 l~~~~~ 207 (305)
T TIGR00635 202 LRRVRD 207 (305)
T ss_pred HHHHHH
Confidence 776543
No 82
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.64 E-value=3.1e-15 Score=174.26 Aligned_cols=227 Identities=22% Similarity=0.258 Sum_probs=156.4
Q ss_pred HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005670 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 270 el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAra 349 (684)
.+...+++ |.|.+.+++.+.+.+... +..... . .. .. ..+.++||+||||||||++|++
T Consensus 146 ~~~~~~~d-i~g~~~~~~~l~~i~~~~-~~~~~~-~---~~--------------~~-~~~~gill~G~~G~GKt~~~~~ 204 (644)
T PRK10733 146 QIKTTFAD-VAGCDEAKEEVAELVEYL-REPSRF-Q---KL--------------GG-KIPKGVLMVGPPGTGKTLLAKA 204 (644)
T ss_pred hhhCcHHH-HcCHHHHHHHHHHHHHHh-hCHHHH-H---hc--------------CC-CCCCcEEEECCCCCCHHHHHHH
Confidence 33344444 689999999999887521 110000 0 00 00 1136799999999999999999
Q ss_pred HHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHH
Q 005670 350 LARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 350 LA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+|+.++.||+.++++++. ..++|.. ...++.+|..+. ...++||||||||.+...++....+.+...+.+.+.|
T Consensus 205 ~a~~~~~~f~~is~~~~~-~~~~g~~-~~~~~~~f~~a~----~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~l 278 (644)
T PRK10733 205 IAGEAKVPFFTISGSDFV-EMFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 278 (644)
T ss_pred HHHHcCCCEEEEehHHhH-Hhhhccc-HHHHHHHHHHHH----hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHH
Confidence 999999999999999887 5788876 567788887653 3478999999999999877654444445556788899
Q ss_pred HHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHH
Q 005670 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~L 509 (684)
|..|||.. +...+++|+++|..+
T Consensus 279 L~~mdg~~-------------------~~~~vivIaaTN~p~-------------------------------------- 301 (644)
T PRK10733 279 LVEMDGFE-------------------GNEGIIVIAATNRPD-------------------------------------- 301 (644)
T ss_pred HHhhhccc-------------------CCCCeeEEEecCChh--------------------------------------
Confidence 99898521 123588888888432
Q ss_pred HhhccchhhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCC
Q 005670 510 METVESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAIS 587 (684)
Q Consensus 510 l~~v~~~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~ 587 (684)
.+.|.++ +|||..|.++.++.++..+|++.++..+ .+...++ +..+++ ..
T Consensus 302 ------------~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~-----------~l~~~~d---~~~la~--~t 353 (644)
T PRK10733 302 ------------VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-----------PLAPDID---AAIIAR--GT 353 (644)
T ss_pred ------------hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC-----------CCCCcCC---HHHHHh--hC
Confidence 1234444 6999999999999999999987532111 1111122 344565 35
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 005670 588 KNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 588 ~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.++..++|.+++..+...+..
T Consensus 354 ~G~sgadl~~l~~eAa~~a~r 374 (644)
T PRK10733 354 PGFSGADLANLVNEAALFAAR 374 (644)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 667778899998887776653
No 83
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=3e-15 Score=172.96 Aligned_cols=186 Identities=25% Similarity=0.340 Sum_probs=130.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.||||+++++.|..++..... ++.+||+||+|||||++|+.+|+.+++.
T Consensus 17 EVIGQe~Vv~~L~~aL~~gRL-------------------------------~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGRL-------------------------------HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 379999999999988851100 2567999999999999999999999652
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++++|.. .-.|. ..++++++...+........|+||||+|.|...
T Consensus 66 ~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa-----s~rgV---DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~--- 134 (830)
T PRK07003 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAA-----SNRGV---DEMAALLERAVYAPVDARFKVYMIDEVHMLTNH--- 134 (830)
T ss_pred cCCCCCCCcccHHHHHHhcCCCceEEEeccc-----ccccH---HHHHHHHHHHHhccccCCceEEEEeChhhCCHH---
Confidence 2222221 11221 234555544322222345689999999999876
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.+|.||+.||+ ...+++||+++|...
T Consensus 135 -----------A~NALLKtLEE---------------------PP~~v~FILaTtd~~---------------------- 160 (830)
T PRK07003 135 -----------AFNAMLKTLEE---------------------PPPHVKFILATTDPQ---------------------- 160 (830)
T ss_pred -----------HHHHHHHHHHh---------------------cCCCeEEEEEECChh----------------------
Confidence 89999999983 123578888877211
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+++|+- .+.|.+++.+++.+++++.+.. + .+.+
T Consensus 161 ----------------------------KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il~~-----------E--gI~i 198 (830)
T PRK07003 161 ----------------------------KIPVTVLSRCL-QFNLKQMPAGHIVSHLERILGE-----------E--RIAF 198 (830)
T ss_pred ----------------------------hccchhhhheE-EEecCCcCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 23466777774 8999999999999888653211 2 5678
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|++. ..++.|...++++..+.
T Consensus 199 d~eAL~lIA~~---A~GsmRdALsLLdQAia 226 (830)
T PRK07003 199 EPQALRLLARA---AQGSMRDALSLTDQAIA 226 (830)
T ss_pred CHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 99999999996 35567888888777663
No 84
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=4e-15 Score=164.96 Aligned_cols=166 Identities=28% Similarity=0.418 Sum_probs=118.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
.+++|+||||||||++|+++|+.++.+|+.+++.... ...++.++.............||||||||.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 6899999999999999999999999999999876432 1223334333221111235689999999999876
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~ 490 (684)
.|+.|+..+++. .+++|.+++...
T Consensus 108 --------------~q~~LL~~le~~-----------------------~iilI~att~n~------------------- 131 (413)
T PRK13342 108 --------------QQDALLPHVEDG-----------------------TITLIGATTENP------------------- 131 (413)
T ss_pred --------------HHHHHHHHhhcC-----------------------cEEEEEeCCCCh-------------------
Confidence 899999999821 244554433100
Q ss_pred cccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcc
Q 005670 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~ 570 (684)
...+.+.+++|+ .++.|.+++.+++..++...+... . .++
T Consensus 132 -----------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~----~-----~~~- 171 (413)
T PRK13342 132 -----------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDK----E-----RGL- 171 (413)
T ss_pred -----------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHh----h-----cCC-
Confidence 012457788898 589999999999999887632221 1 122
Q ss_pred ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+.+++++++.|++.+ +++.|.+.++++.++.
T Consensus 172 i~i~~~al~~l~~~s---~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 172 VELDDEALDALARLA---NGDARRALNLLELAAL 202 (413)
T ss_pred CCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 478999999999963 6779999999998754
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=4.4e-15 Score=166.91 Aligned_cols=186 Identities=26% Similarity=0.425 Sum_probs=127.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
.|+||+++++.|..++..+. .++.+||+||||||||++|+++|+.+++
T Consensus 15 divGq~~i~~~L~~~i~~~~-------------------------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNS-------------------------------ISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 37999999998888775211 1267899999999999999999999864
Q ss_pred -----------------------CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 357 -----------------------PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 357 -----------------------pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
.++.++++. ..|.+ .++.+..........+...||||||+|.+...
T Consensus 64 ~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-----~~gid---~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--- 132 (472)
T PRK14962 64 NRKGVEPCNECRACRSIDEGTFMDVIELDAAS-----NRGID---EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--- 132 (472)
T ss_pred cCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-----cCCHH---HHHHHHHHHhhChhcCCeEEEEEEChHHhHHH---
Confidence 244444421 22222 23333332221111245679999999999765
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.|++.|+. ...+++||++++.. +
T Consensus 133 -----------a~~~LLk~LE~---------------------p~~~vv~Ilattn~--~-------------------- 158 (472)
T PRK14962 133 -----------AFNALLKTLEE---------------------PPSHVVFVLATTNL--E-------------------- 158 (472)
T ss_pred -----------HHHHHHHHHHh---------------------CCCcEEEEEEeCCh--H--------------------
Confidence 88999999982 11246666665511 0
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+.+|+. ++.|.+++.+++..+++..+. .. .+.+
T Consensus 159 ----------------------------kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~-----------~e--gi~i 196 (472)
T PRK14962 159 ----------------------------KVPPTIISRCQ-VIEFRNISDELIIKRLQEVAE-----------AE--GIEI 196 (472)
T ss_pred ----------------------------hhhHHHhcCcE-EEEECCccHHHHHHHHHHHHH-----------Hc--CCCC
Confidence 13356777875 899999999999888765221 12 4679
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++++|++. .++++|.+-+.++.++.
T Consensus 197 ~~eal~~Ia~~---s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 197 DREALSFIAKR---ASGGLRDALTMLEQVWK 224 (472)
T ss_pred CHHHHHHHHHH---hCCCHHHHHHHHHHHHH
Confidence 99999999996 35778999888887554
No 86
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.63 E-value=7.3e-15 Score=162.83 Aligned_cols=249 Identities=16% Similarity=0.260 Sum_probs=155.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
..++++|++||||+++|++++... +.||+.++|+.+.+ +..+|+..+. +........+.+..+.+|+|||||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~-~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGA-FTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCC-cCCCCcCCCCceeECCCCEEEEec
Confidence 689999999999999999999876 36899999997752 1122221110 000001112345667899999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccC
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.+++. +|..|++.++...+. ..+....+.+ ++.+|++++ .++.+.+..+
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~-------~~~~~~~~~~---~~rii~~t~-~~~~~~~~~~---- 292 (441)
T PRK10365 242 IGDISPM--------------MQVRLLRAIQEREVQ-------RVGSNQTISV---DVRLIAATH-RDLAAEVNAG---- 292 (441)
T ss_pred cccCCHH--------------HHHHHHHHHccCcEE-------eCCCCceeee---ceEEEEeCC-CCHHHHHHcC----
Confidence 9999987 999999999833221 1122222233 356676665 2443333222
Q ss_pred CCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccce-EEEccccCH--HHHHHHHhchHHHHHHHH
Q 005670 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLse--eel~~Il~~~l~~L~kq~ 560 (684)
.|+++|+.|+.. .|.++||.+ +|+..+++..+..+.+++
T Consensus 293 --------------------------------------~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~ 334 (441)
T PRK10365 293 --------------------------------------RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERN 334 (441)
T ss_pred --------------------------------------CchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHh
Confidence 366778888864 488889886 688888777554443322
Q ss_pred HHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCCCCCcce
Q 005670 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAK 640 (684)
Q Consensus 561 ~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~~~~~~~ 640 (684)
. .....+++++++.|.. |.|++|+|+|+++|++++..+-.. .|+.+.+..........
T Consensus 335 ~------~~~~~~~~~a~~~L~~--~~wpgN~reL~~~~~~~~~~~~~~--------------~i~~~~l~~~~~~~~~~ 392 (441)
T PRK10365 335 R------KAVKGFTPQAMDLLIH--YDWPGNIRELENAVERAVVLLTGE--------------YISERELPLAIASTPIP 392 (441)
T ss_pred C------CCCCCcCHHHHHHHHh--CCCCCHHHHHHHHHHHHHHhCCCC--------------ccchHhCchhhcccccC
Confidence 1 1124599999999999 689999999999999987642110 12222221100000000
Q ss_pred EEcCcchHHHHHHHHHHhhhhhccccCCCCC
Q 005670 641 ILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 641 i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
......+. -+.+.|+..|.+.+..++|+.
T Consensus 393 -~~~~~~~~-~l~~~e~~~i~~~l~~~~gn~ 421 (441)
T PRK10365 393 -LGQSQDIQ-PLVEVEKEVILAALEKTGGNK 421 (441)
T ss_pred -cccccchh-hHHHHHHHHHHHHHHHhCCCH
Confidence 00111232 367889999999999988875
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.7e-15 Score=168.78 Aligned_cols=186 Identities=25% Similarity=0.334 Sum_probs=127.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.||||+.+++.|..++.+... ++.+||+||+|||||++|+.+|+.+++.
T Consensus 17 dVIGQe~vv~~L~~al~~gRL-------------------------------pHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRL-------------------------------HHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCC-------------------------------ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999999998852211 2678999999999999999999999761
Q ss_pred -----------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccc
Q 005670 358 -----------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 358 -----------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 408 (684)
++.+|.. .-.|. ..++++++...+.-......|+||||+|.|.
T Consensus 66 ~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa-----s~~gV---DdIReLie~~~~~P~~gr~KViIIDEah~Ls 137 (700)
T PRK12323 66 GADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA-----SNRGV---DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT 137 (700)
T ss_pred CccccccCCCCCCcccHHHHHHHcCCCCcceEeccc-----ccCCH---HHHHHHHHHHHhchhcCCceEEEEEChHhcC
Confidence 2222221 11222 2344444433222223456899999999998
Q ss_pred cccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCC
Q 005670 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~ 488 (684)
.. .+|.||+.||+ ...+++||++++..
T Consensus 138 ~~--------------AaNALLKTLEE---------------------PP~~v~FILaTtep------------------ 164 (700)
T PRK12323 138 NH--------------AFNAMLKTLEE---------------------PPEHVKFILATTDP------------------ 164 (700)
T ss_pred HH--------------HHHHHHHhhcc---------------------CCCCceEEEEeCCh------------------
Confidence 76 89999999983 12347888877621
Q ss_pred cccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcC
Q 005670 489 APVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNG 568 (684)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~g 568 (684)
.. +.+.+++|+- ++.|.+++.+++.+.+.+.+. .+
T Consensus 165 --------------~k------------------LlpTIrSRCq-~f~f~~ls~eei~~~L~~Il~-----------~E- 199 (700)
T PRK12323 165 --------------QK------------------IPVTVLSRCL-QFNLKQMPPGHIVSHLDAILG-----------EE- 199 (700)
T ss_pred --------------Hh------------------hhhHHHHHHH-hcccCCCChHHHHHHHHHHHH-----------Hc-
Confidence 11 2344555653 799999999999887765321 12
Q ss_pred ccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 569 VKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 569 i~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.+.+++++++.|++. .+++.|...++++..+.
T Consensus 200 -gi~~d~eAL~~IA~~---A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 200 -GIAHEVNALRLLAQA---AQGSMRDALSLTDQAIA 231 (700)
T ss_pred -CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 466899999999986 35667888877776553
No 88
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.62 E-value=2.2e-15 Score=147.71 Aligned_cols=149 Identities=23% Similarity=0.413 Sum_probs=103.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--- 355 (684)
+||.+.+++.+.+.+..- ...+.+|||+|++||||+.+|++|++...
T Consensus 1 liG~s~~m~~~~~~~~~~------------------------------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~ 50 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA------------------------------ASSDLPVLITGETGTGKELLARAIHNNSPRKN 50 (168)
T ss_dssp SS--SHHHHHHHHHHHHH------------------------------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTT
T ss_pred CEeCCHHHHHHHHHHHHH------------------------------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhccc
Confidence 588899999888887511 11137999999999999999999999874
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhc-----------ccchHhhhcCcEEEEecccccccccccccCCCCCcchH
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTV-----------SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~-----------a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (684)
.||+.+||+.+.+ +..-.++|.. ..+.++.+.+|+||||||+.|++.
T Consensus 51 ~pfi~vnc~~~~~--------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------- 108 (168)
T PF00158_consen 51 GPFISVNCAALPE--------ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------- 108 (168)
T ss_dssp S-EEEEETTTS-H--------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------
T ss_pred CCeEEEehhhhhc--------chhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHH--------------
Confidence 6999999998762 2222334432 236678899999999999999998
Q ss_pred HHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccc
Q 005670 425 VQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 425 vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~ 491 (684)
+|..|+++|+ +....+ +..+.+.+ ++.+|++++ .+|++.+.++.|+.+++|+..+
T Consensus 109 ~Q~~Ll~~l~~~~~~~~--------g~~~~~~~---~~RiI~st~-~~l~~~v~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 109 LQAKLLRVLEEGKFTRL--------GSDKPVPV---DVRIIASTS-KDLEELVEQGRFREDLYYRLNV 164 (168)
T ss_dssp HHHHHHHHHHHSEEECC--------TSSSEEE-----EEEEEEES-S-HHHHHHTTSS-HHHHHHHTT
T ss_pred HHHHHHHHHhhchhccc--------cccccccc---cceEEeecC-cCHHHHHHcCCChHHHHHHhce
Confidence 9999999998 433332 12222233 577887776 6899999999998888876543
No 89
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1e-14 Score=167.12 Aligned_cols=186 Identities=23% Similarity=0.286 Sum_probs=130.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
.|+||+.+++.|..++.+.. .++.+||+||+|||||++|+++|+.+++
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-------------------------------l~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-------------------------------LHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37999999999998885211 1268899999999999999999999975
Q ss_pred -----------------------CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 357 -----------------------PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 357 -----------------------pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
.++.+|+++ ..+ -..+++++....+........|++|||+|.|...
T Consensus 65 ~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-----~~~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--- 133 (702)
T PRK14960 65 TGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-----RTK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--- 133 (702)
T ss_pred cCCCCCCCccCHHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH---
Confidence 233333321 122 2335555554433323345679999999999876
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.||+.||. ...++.||++++.. .
T Consensus 134 -----------A~NALLKtLEE---------------------PP~~v~FILaTtd~--~-------------------- 159 (702)
T PRK14960 134 -----------SFNALLKTLEE---------------------PPEHVKFLFATTDP--Q-------------------- 159 (702)
T ss_pred -----------HHHHHHHHHhc---------------------CCCCcEEEEEECCh--H--------------------
Confidence 89999999982 01236677766511 0
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+++|+. ++.|.+++.+++.+.+...+.. . .+.+
T Consensus 160 ----------------------------kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~k-----------E--gI~i 197 (702)
T PRK14960 160 ----------------------------KLPITVISRCL-QFTLRPLAVDEITKHLGAILEK-----------E--QIAA 197 (702)
T ss_pred ----------------------------hhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 12244556664 8999999999998887653211 2 5779
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++..|++.+ +++.|.+-++++.++.
T Consensus 198 d~eAL~~IA~~S---~GdLRdALnLLDQaIa 225 (702)
T PRK14960 198 DQDAIWQIAESA---QGSLRDALSLTDQAIA 225 (702)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999963 5678998888877664
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=4.9e-15 Score=158.73 Aligned_cols=181 Identities=22% Similarity=0.302 Sum_probs=122.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (684)
|+||+++++.|..++... ...++||+||||||||++|+++|+.+..
T Consensus 15 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDG--------------------------------NMPNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 689999999888776411 0157999999999999999999999833
Q ss_pred ---CEEEEecccccccccccchhHHHHHHHHhc---ccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 357 ---PFVIADATTLTQARYVGEDVESILYKLLTV---SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 357 ---pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~---a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
.++.+++++. .|.+ .++..++. ...........||+|||+|.+... .|+.|+
T Consensus 63 ~~~~~~eln~sd~-----~~~~---~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~ 120 (319)
T PLN03025 63 YKEAVLELNASDD-----RGID---VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALR 120 (319)
T ss_pred Cccceeeeccccc-----ccHH---HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHH
Confidence 3555555432 2322 23332221 110011124579999999999876 899999
Q ss_pred HHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHH
Q 005670 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll 510 (684)
+.||. ...++.||+++|...
T Consensus 121 ~~lE~---------------------~~~~t~~il~~n~~~--------------------------------------- 140 (319)
T PLN03025 121 RTMEI---------------------YSNTTRFALACNTSS--------------------------------------- 140 (319)
T ss_pred HHHhc---------------------ccCCceEEEEeCCcc---------------------------------------
Confidence 99982 011244566665210
Q ss_pred hhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCC
Q 005670 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (684)
Q Consensus 511 ~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~ 590 (684)
.+.|++++|+. ++.|.+++.+++..++...+ +.+ .+.++++++++|+.. .++
T Consensus 141 -----------~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~-----------~~e--gi~i~~~~l~~i~~~---~~g 192 (319)
T PLN03025 141 -----------KIIEPIQSRCA-IVRFSRLSDQEILGRLMKVV-----------EAE--KVPYVPEGLEAIIFT---ADG 192 (319)
T ss_pred -----------ccchhHHHhhh-cccCCCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHH---cCC
Confidence 13466777874 79999999999988876522 112 567899999999996 356
Q ss_pred CHHHHHHHHHH
Q 005670 591 GARGLRSLLEN 601 (684)
Q Consensus 591 GAR~Lr~iIe~ 601 (684)
+.|.+-+.+|.
T Consensus 193 DlR~aln~Lq~ 203 (319)
T PLN03025 193 DMRQALNNLQA 203 (319)
T ss_pred CHHHHHHHHHH
Confidence 67888888873
No 91
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.6e-15 Score=158.21 Aligned_cols=212 Identities=21% Similarity=0.273 Sum_probs=146.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
|-|.-..++.+.+.|..|....+-..+ . . -.+|..++||||||||||++|+++|..+++.|
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~r----v--------------g-Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLR----V--------------G-IKPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccc----c--------------C-CCCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 678888889999888766553222111 0 0 12358999999999999999999999999999
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCcee
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+.++++. ++|.|+. ++.+++.|+.+.. ..+||||+||||.+...+.+.+ .+..+.+|..|..++++-
T Consensus 195 l~v~ss~lv-~kyiGEs-aRlIRemf~yA~~----~~pciifmdeiDAigGRr~se~---Ts~dreiqrTLMeLlnqm-- 263 (388)
T KOG0651|consen 195 LKVVSSALV-DKYIGES-ARLIRDMFRYARE----VIPCIIFMDEIDAIGGRRFSEG---TSSDREIQRTLMELLNQM-- 263 (388)
T ss_pred EEeeHhhhh-hhhcccH-HHHHHHHHHHHhh----hCceEEeehhhhhhccEEeccc---cchhHHHHHHHHHHHHhh--
Confidence 999999998 7999998 8999999998765 4789999999999988765433 334455888888888721
Q ss_pred eccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhh
Q 005670 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dl 518 (684)
.| ++..+ .+-+|||+|..+
T Consensus 264 ----dg--fd~l~--------rVk~ImatNrpd----------------------------------------------- 282 (388)
T KOG0651|consen 264 ----DG--FDTLH--------RVKTIMATNRPD----------------------------------------------- 282 (388)
T ss_pred ----cc--chhcc--------cccEEEecCCcc-----------------------------------------------
Confidence 11 22222 377889998432
Q ss_pred hhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHH
Q 005670 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 l~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|+|+ +|+|..+..+-+++.....|++.+...+. ..-.++.+++..+.+ ++|+-.++
T Consensus 283 ---tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~-----------~~Geid~eaivK~~d-----~f~gad~r 343 (388)
T KOG0651|consen 283 ---TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPID-----------FHGEIDDEAILKLVD-----GFNGADLR 343 (388)
T ss_pred ---ccchhhcCCccccceeccCCcchhhceeeEeecccccc-----------ccccccHHHHHHHHh-----ccChHHHh
Confidence 1223333 68887788777777666666655433321 122456666655555 56656666
Q ss_pred HHHH
Q 005670 597 SLLE 600 (684)
Q Consensus 597 ~iIe 600 (684)
++..
T Consensus 344 n~~t 347 (388)
T KOG0651|consen 344 NVCT 347 (388)
T ss_pred hhcc
Confidence 6554
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=8.7e-15 Score=166.05 Aligned_cols=186 Identities=27% Similarity=0.326 Sum_probs=128.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.||||+.+++.|..++..... ++.+||+||+|||||++|+++|+.+++.
T Consensus 17 divGq~~v~~~L~~~~~~~~l-------------------------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQYL-------------------------------HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCCC-------------------------------CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999999998852111 2568999999999999999999999753
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.+|++ ...|.+ .+++++....+....+...|++|||+|.|...
T Consensus 66 ~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa-----s~~~v~---~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--- 134 (509)
T PRK14958 66 KGVSANPCNDCENCREIDEGRFPDLFEVDAA-----SRTKVE---DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--- 134 (509)
T ss_pred CCCCcccCCCCHHHHHHhcCCCceEEEEccc-----ccCCHH---HHHHHHHHHhhccccCCcEEEEEEChHhcCHH---
Confidence 3344432 222322 34555544333222345679999999999876
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.+++||+.||. ...+++||++++..
T Consensus 135 -----------a~naLLk~LEe---------------------pp~~~~fIlattd~----------------------- 159 (509)
T PRK14958 135 -----------SFNALLKTLEE---------------------PPSHVKFILATTDH----------------------- 159 (509)
T ss_pred -----------HHHHHHHHHhc---------------------cCCCeEEEEEECCh-----------------------
Confidence 89999999983 12346777766511
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
. .+.+.+++|+. ++.|.+++.+++.+.+... +... .+.+
T Consensus 160 ---------~------------------kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~i-----------l~~e--gi~~ 198 (509)
T PRK14958 160 ---------H------------------KLPVTVLSRCL-QFHLAQLPPLQIAAHCQHL-----------LKEE--NVEF 198 (509)
T ss_pred ---------H------------------hchHHHHHHhh-hhhcCCCCHHHHHHHHHHH-----------HHHc--CCCC
Confidence 0 12234556663 7889999999988776552 2222 4668
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|++.+ +++.|.+.++++.++.
T Consensus 199 ~~~al~~ia~~s---~GslR~al~lLdq~ia 226 (509)
T PRK14958 199 ENAALDLLARAA---NGSVRDALSLLDQSIA 226 (509)
T ss_pred CHHHHHHHHHHc---CCcHHHHHHHHHHHHh
Confidence 999999999963 4678999999987653
No 93
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.61 E-value=9.5e-15 Score=171.33 Aligned_cols=170 Identities=26% Similarity=0.332 Sum_probs=117.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHh-hhcCcEEEEeccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA-AAQQGIVYIDEVDKITK 409 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~-~a~~gILfIDEIDkl~~ 409 (684)
.+++|+||||||||++|+++|+.++.+|+.+++.... . ..++..+........ .....+|||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------V---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------h---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 6899999999999999999999999999988875321 1 112222222111111 12457999999999987
Q ss_pred ccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCc
Q 005670 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~ 489 (684)
. .|+.|++.++. ..+++|++++....
T Consensus 124 ~--------------qQdaLL~~lE~-----------------------g~IiLI~aTTenp~----------------- 149 (725)
T PRK13341 124 A--------------QQDALLPWVEN-----------------------GTITLIGATTENPY----------------- 149 (725)
T ss_pred H--------------HHHHHHHHhcC-----------------------ceEEEEEecCCChH-----------------
Confidence 6 78999999882 12456655441100
Q ss_pred ccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCc
Q 005670 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi 569 (684)
..+.+.+++|.. ++.|++++.+++..+++..+....+.+. ..
T Consensus 150 -------------------------------~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g------~~ 191 (725)
T PRK13341 150 -------------------------------FEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGYG------DR 191 (725)
T ss_pred -------------------------------hhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhcC------Cc
Confidence 013356777754 7899999999999999875443322111 12
Q ss_pred cccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 570 ~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.+.++++++++|++.+ ++++|.+.++|+.++.
T Consensus 192 ~v~I~deaL~~La~~s---~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA---NGDARSLLNALELAVE 223 (725)
T ss_pred ccCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 5779999999999963 6789999999998764
No 94
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.60 E-value=2e-15 Score=151.81 Aligned_cols=184 Identities=19% Similarity=0.288 Sum_probs=82.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
.|+||+.+|+.|..++.. .+++||+||||||||++|++++..+..
T Consensus 4 dI~GQe~aKrAL~iAAaG----------------------------------~h~lLl~GppGtGKTmlA~~l~~lLP~l 49 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG----------------------------------GHHLLLIGPPGTGKTMLARRLPSLLPPL 49 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC----------------------------------C--EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred hhcCcHHHHHHHHHHHcC----------------------------------CCCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence 489999999999988851 279999999999999999999998821
Q ss_pred ---C---EEEE---ec----cccc-ccccc----cchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCC
Q 005670 357 ---P---FVIA---DA----TTLT-QARYV----GEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 357 ---p---fv~i---~~----s~l~-~s~yv----G~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (684)
. ...+ .. ..+. ...|. ..+....+..-..-.++.+..|++|||||||+-.+.+.
T Consensus 50 ~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~-------- 121 (206)
T PF01078_consen 50 TEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS-------- 121 (206)
T ss_dssp CEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH--------
T ss_pred chHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH--------
Confidence 0 0000 00 0000 00000 01111111111123567788999999999999999877
Q ss_pred CCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccC
Q 005670 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~ 498 (684)
+++.|++.||...+.|.. ......-..++++|+|.|. +..|+.......+
T Consensus 122 ------vld~Lr~ple~g~v~i~R--------~~~~~~~Pa~f~lv~a~NP-------------cpCG~~~~~~~~C--- 171 (206)
T PF01078_consen 122 ------VLDALRQPLEDGEVTISR--------AGGSVTYPARFLLVAAMNP-------------CPCGYYGDPDNRC--- 171 (206)
T ss_dssp ------HHHHHHHHHHHSBEEEEE--------TTEEEEEB--EEEEEEE-S-----------------------------
T ss_pred ------HHHHHHHHHHCCeEEEEE--------CCceEEEecccEEEEEecc-------------ccccccccccccc---
Confidence 999999999855555422 2223455678999999883 5666544222221
Q ss_pred CCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHH
Q 005670 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQ 544 (684)
Q Consensus 499 ~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseee 544 (684)
.+.+.....++++ +.-+|++|||+.|.+++++.+|
T Consensus 172 -~Cs~~~~~~Y~~r----------lsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 172 -RCSPRQIRRYQSR----------LSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ----------------------------------------------
T ss_pred -ccccccccccccc----------ccccccccccccccccccccCC
Confidence 1233334444444 5578999999999998887654
No 95
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.60 E-value=6.7e-15 Score=153.70 Aligned_cols=188 Identities=25% Similarity=0.321 Sum_probs=122.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (684)
++||+.++..|..++... ...++|||||||||||+.|+++|++++.+
T Consensus 38 ~~gQe~vV~~L~~a~~~~--------------------------------~lp~~LFyGPpGTGKTStalafar~L~~~~ 85 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLRR--------------------------------ILPHYLFYGPPGTGKTSTALAFARALNCEQ 85 (346)
T ss_pred hcchHHHHHHHHHHHhhc--------------------------------CCceEEeeCCCCCcHhHHHHHHHHHhcCcc
Confidence 699999999999998520 01699999999999999999999999763
Q ss_pred -----EEEEecccccccccccchhHHHHHHHHhcc--cchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 358 -----FVIADATTLTQARYVGEDVESILYKLLTVS--DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 358 -----fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a--~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
+...++++...-..+.+. -..+..+.... ..........||+|||.|.|+.+ +|++|+
T Consensus 86 ~~~~rvl~lnaSderGisvvr~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aLr 150 (346)
T KOG0989|consen 86 LFPCRVLELNASDERGISVVREK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAALR 150 (346)
T ss_pred ccccchhhhcccccccccchhhh-hcCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHHH
Confidence 233344333211111111 11111111111 00001123379999999999987 999999
Q ss_pred HHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHH
Q 005670 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll 510 (684)
+.||. ..++++||+.+|..+
T Consensus 151 r~mE~---------------------~s~~trFiLIcnyls--------------------------------------- 170 (346)
T KOG0989|consen 151 RTMED---------------------FSRTTRFILICNYLS--------------------------------------- 170 (346)
T ss_pred HHHhc---------------------cccceEEEEEcCChh---------------------------------------
Confidence 99992 123467777766321
Q ss_pred hhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCC
Q 005670 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (684)
Q Consensus 511 ~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~ 590 (684)
.+++++.+|+. -+.|.++..+++...++..+..- .+.++++|++.|++.+ .+
T Consensus 171 -----------rii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E-------------~v~~d~~al~~I~~~S---~G 222 (346)
T KOG0989|consen 171 -----------RIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKE-------------GVDIDDDALKLIAKIS---DG 222 (346)
T ss_pred -----------hCChHHHhhHH-HhcCCCcchHHHHHHHHHHHHHh-------------CCCCCHHHHHHHHHHc---CC
Confidence 24556677776 68899999999888877532221 6789999999999963 34
Q ss_pred CHHHHHHHHHH
Q 005670 591 GARGLRSLLEN 601 (684)
Q Consensus 591 GAR~Lr~iIe~ 601 (684)
.-|.-...+|.
T Consensus 223 dLR~Ait~Lqs 233 (346)
T KOG0989|consen 223 DLRRAITTLQS 233 (346)
T ss_pred cHHHHHHHHHH
Confidence 44555555544
No 96
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.8e-14 Score=169.10 Aligned_cols=190 Identities=25% Similarity=0.289 Sum_probs=127.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.||||+.+++.|..++.... -++.+||+||||||||++|+++|+.+++.
T Consensus 17 dIIGQe~Iv~~LknaI~~~r-------------------------------l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR-------------------------------LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 37999999999988885210 02567999999999999999999999764
Q ss_pred EE-E------------------EecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCC
Q 005670 358 FV-I------------------ADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 358 fv-~------------------i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (684)
-. . .+..++..+...|. ..++.+.....+........|+||||+|+|...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kV---DdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-------- 134 (944)
T PRK14949 66 QGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKV---DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-------- 134 (944)
T ss_pred cCCCCCCCCCchHHHHHhcCCCceEEEeccccccCH---HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH--------
Confidence 10 0 00001111111222 234444433222222345689999999999877
Q ss_pred CCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccC
Q 005670 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~ 498 (684)
.++.||+.||+ ...+++||++++...
T Consensus 135 ------AqNALLKtLEE---------------------PP~~vrFILaTTe~~--------------------------- 160 (944)
T PRK14949 135 ------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ--------------------------- 160 (944)
T ss_pred ------HHHHHHHHHhc---------------------cCCCeEEEEECCCch---------------------------
Confidence 99999999993 122466777655211
Q ss_pred CCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHH
Q 005670 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 499 ~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl 578 (684)
.+.+.+++|+- ++.|.+++.+++.+.+++.+.. . .+.++++++
T Consensus 161 -----------------------kLl~TIlSRCq-~f~fkpLs~eEI~~~L~~il~~-----------E--gI~~edeAL 203 (944)
T PRK14949 161 -----------------------KLPVTVLSRCL-QFNLKSLTQDEIGTQLNHILTQ-----------E--QLPFEAEAL 203 (944)
T ss_pred -----------------------hchHHHHHhhe-EEeCCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHH
Confidence 12345666663 8999999999999887653211 1 577999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 579 RLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 579 ~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+.|++. .+++.|..-++++..+
T Consensus 204 ~lIA~~---S~Gd~R~ALnLLdQal 225 (944)
T PRK14949 204 TLLAKA---ANGSMRDALSLTDQAI 225 (944)
T ss_pred HHHHHH---cCCCHHHHHHHHHHHH
Confidence 999996 3666888888887666
No 97
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=5.5e-14 Score=153.46 Aligned_cols=186 Identities=26% Similarity=0.305 Sum_probs=123.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+++++.+..++.... -++.+||+||||||||++|+++|+.+++.
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~-------------------------------~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR-------------------------------IHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred hccChHHHHHHHHHHHHcCC-------------------------------CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999988885110 12568999999999999999999998642
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.++++ ...+ -..++.+..............|++|||+|++...
T Consensus 66 ~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~-----~~~~---v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~--- 134 (363)
T PRK14961 66 NGITSNPCRKCIICKEIEKGLCLDLIEIDAA-----SRTK---VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH--- 134 (363)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceEEeccc-----ccCC---HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH---
Confidence 1112111 0111 1224444433211111234579999999999765
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.||+.||. ...++.||++++.. +
T Consensus 135 -----------a~naLLk~lEe---------------------~~~~~~fIl~t~~~--~-------------------- 160 (363)
T PRK14961 135 -----------SFNALLKTLEE---------------------PPQHIKFILATTDV--E-------------------- 160 (363)
T ss_pred -----------HHHHHHHHHhc---------------------CCCCeEEEEEcCCh--H--------------------
Confidence 78999999982 11245667665511 1
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+.+|+- ++.|.+++.+++.+++...+ ... .+.+
T Consensus 161 ----------------------------~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~~-----------~~~--g~~i 198 (363)
T PRK14961 161 ----------------------------KIPKTILSRCL-QFKLKIISEEKIFNFLKYIL-----------IKE--SIDT 198 (363)
T ss_pred ----------------------------hhhHHHHhhce-EEeCCCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 12345667763 79999999999998876521 112 4678
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.++..+ +++.|.+.+.++.++.
T Consensus 199 ~~~al~~ia~~s---~G~~R~al~~l~~~~~ 226 (363)
T PRK14961 199 DEYALKLIAYHA---HGSMRDALNLLEHAIN 226 (363)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999963 4568888888887653
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.9e-14 Score=164.63 Aligned_cols=185 Identities=27% Similarity=0.323 Sum_probs=127.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.||||+.+++.|..++..... ++.+||+||+|||||++|+.+|+.+++.
T Consensus 17 divGQe~vv~~L~~~l~~~rl-------------------------------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGRL-------------------------------HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 379999999999988852111 2567999999999999999999999763
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.++.++ ..|. ..++++.....+.-......|+||||+|+|...
T Consensus 66 ~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~V---ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--- 134 (647)
T PRK07994 66 TGITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTKV---EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--- 134 (647)
T ss_pred cCCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCCH---HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH---
Confidence 22222211 1222 234444443222212345679999999999877
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.+|.||+.||+ ...+++||++++...
T Consensus 135 -----------a~NALLKtLEE---------------------Pp~~v~FIL~Tt~~~---------------------- 160 (647)
T PRK07994 135 -----------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ---------------------- 160 (647)
T ss_pred -----------HHHHHHHHHHc---------------------CCCCeEEEEecCCcc----------------------
Confidence 89999999993 122477777765210
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+++|+ ..+.|.+++.+++.+.+...+ ... .+.+
T Consensus 161 ----------------------------kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il-----------~~e--~i~~ 198 (647)
T PRK07994 161 ----------------------------KLPVTILSRC-LQFHLKALDVEQIRQQLEHIL-----------QAE--QIPF 198 (647)
T ss_pred ----------------------------ccchHHHhhh-eEeeCCCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 1335567775 489999999999988876522 112 4678
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+++++..|+.. .++..|...++++..+
T Consensus 199 e~~aL~~Ia~~---s~Gs~R~Al~lldqai 225 (647)
T PRK07994 199 EPRALQLLARA---ADGSMRDALSLTDQAI 225 (647)
T ss_pred CHHHHHHHHHH---cCCCHHHHHHHHHHHH
Confidence 99999999986 3555788888877654
No 99
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4e-14 Score=159.21 Aligned_cols=185 Identities=25% Similarity=0.338 Sum_probs=128.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (684)
||||+.+++.|..++.... -++++||+||+|||||++|+.+|+.+++
T Consensus 15 liGQe~vv~~L~~a~~~~r-------------------------------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 15 LVGQDVLVRILRNAFTLNK-------------------------------IPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred hcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 7999999999988874110 1368999999999999999999998743
Q ss_pred ----------------------CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccc
Q 005670 357 ----------------------PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 357 ----------------------pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~ 414 (684)
.++.+|+++ ..|.+ .++.++....+.-..+...|++|||+|.+...
T Consensus 64 ~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-----~~~vd---dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~---- 131 (491)
T PRK14964 64 GPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-----NTSVD---DIKVILENSCYLPISSKFKVYIIDEVHMLSNS---- 131 (491)
T ss_pred CCCCCCccccHHHHHHhccCCCCEEEEeccc-----CCCHH---HHHHHHHHHHhccccCCceEEEEeChHhCCHH----
Confidence 234444432 23332 34444444332222356789999999999876
Q ss_pred cCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccc
Q 005670 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~ 494 (684)
.++.||+.||+ ....++||++++. .+
T Consensus 132 ----------A~NaLLK~LEe---------------------Pp~~v~fIlatte--~~--------------------- 157 (491)
T PRK14964 132 ----------AFNALLKTLEE---------------------PAPHVKFILATTE--VK--------------------- 157 (491)
T ss_pred ----------HHHHHHHHHhC---------------------CCCCeEEEEEeCC--hH---------------------
Confidence 89999999993 1124677776651 11
Q ss_pred cccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc
Q 005670 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s 574 (684)
. +.+.+++|+. ++.|.+++.+++.+.+...+. .. .+.++
T Consensus 158 ---------K------------------l~~tI~SRc~-~~~f~~l~~~el~~~L~~ia~-----------~E--gi~i~ 196 (491)
T PRK14964 158 ---------K------------------IPVTIISRCQ-RFDLQKIPTDKLVEHLVDIAK-----------KE--NIEHD 196 (491)
T ss_pred ---------H------------------HHHHHHHhhe-eeecccccHHHHHHHHHHHHH-----------Hc--CCCCC
Confidence 1 1233444553 789999999999888765221 12 56799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++.|++.+ +++.|.+.+.++.++.
T Consensus 197 ~eAL~lIa~~s---~GslR~alslLdqli~ 223 (491)
T PRK14964 197 EESLKLIAENS---SGSMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999999963 5678999999988765
No 100
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.58 E-value=2.2e-14 Score=169.67 Aligned_cols=218 Identities=23% Similarity=0.334 Sum_probs=149.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
|+|++++++.|.+.+..+.++...... .+ + .++.++||+||||||||++|+++|+.++.+|
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~----~g--------------i-~~~~giLL~GppGtGKT~laraia~~~~~~~ 240 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEH----LG--------------I-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYF 240 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHh----cC--------------C-CCCceEEEECCCCCChHHHHHHHHHHhCCeE
Confidence 799999999999998644332110000 00 0 1247899999999999999999999999999
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCcee
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++.++. +.|.|.. +..++.+|+.+. ...++||||||||.+.+.++... ......+++.|+.+|++..
T Consensus 241 i~i~~~~i~-~~~~g~~-~~~l~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~- 310 (733)
T TIGR01243 241 ISINGPEIM-SKYYGES-EERLREIFKEAE----ENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLK- 310 (733)
T ss_pred EEEecHHHh-cccccHH-HHHHHHHHHHHH----hcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccc-
Confidence 999999887 6788876 667888887654 24679999999999987654321 1222458899999998411
Q ss_pred eccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhh
Q 005670 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dl 518 (684)
....+++|+++|..+
T Consensus 311 ------------------~~~~vivI~atn~~~----------------------------------------------- 325 (733)
T TIGR01243 311 ------------------GRGRVIVIGATNRPD----------------------------------------------- 325 (733)
T ss_pred ------------------cCCCEEEEeecCChh-----------------------------------------------
Confidence 112467777776321
Q ss_pred hhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHH
Q 005670 519 IAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 519 l~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.++ +||+..+.+..++.++..+|++... .+..+ ..+..++.+++. ..++-...|.
T Consensus 326 ---~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~-------------~~~~l-~~d~~l~~la~~--t~G~~gadl~ 386 (733)
T TIGR01243 326 ---ALDPALRRPGRFDREIVIRVPDKRARKEILKVHT-------------RNMPL-AEDVDLDKLAEV--THGFVGADLA 386 (733)
T ss_pred ---hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh-------------cCCCC-ccccCHHHHHHh--CCCCCHHHHH
Confidence 1223343 5899999999999999998886311 11122 123346777774 4566667888
Q ss_pred HHHHHHHHHHHhc
Q 005670 597 SLLENILMDAMYE 609 (684)
Q Consensus 597 ~iIe~~l~~al~e 609 (684)
.++......++.+
T Consensus 387 ~l~~~a~~~al~r 399 (733)
T TIGR01243 387 ALAKEAAMAALRR 399 (733)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776665544
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.57 E-value=1e-14 Score=154.66 Aligned_cols=199 Identities=22% Similarity=0.295 Sum_probs=135.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC---EEEEecccccccccccchhHHHHHHHHhcccch-HhhhcCcEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQARYVGEDVESILYKLLTVSDYN-VAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p---fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~-v~~a~~gILfIDEIDk 406 (684)
..++||||||||||+||+.|+.-...+ |+.++++.-. -.-++++|+.+... .......|||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 689999999999999999999998766 8888776543 23456666554322 2334678999999999
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCC
Q 005670 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lg 486 (684)
+.+. .|+.||..+|. | .|++|-+++-. -
T Consensus 234 FNks--------------QQD~fLP~VE~--------G---------------~I~lIGATTEN--------------P- 261 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVEN--------G---------------DITLIGATTEN--------------P- 261 (554)
T ss_pred hhhh--------------hhhcccceecc--------C---------------ceEEEecccCC--------------C-
Confidence 9887 89999999881 1 25666655410 0
Q ss_pred CCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHh
Q 005670 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~ 566 (684)
.+++..+|++|+. ++.+.+|..+++..|+.+.++.|.+.-+..-..
T Consensus 262 ---------------------------------SFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l 307 (554)
T KOG2028|consen 262 ---------------------------------SFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPL 307 (554)
T ss_pred ---------------------------------ccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCC
Confidence 1235567788887 788999999999999998776665321100001
Q ss_pred cCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCC
Q 005670 567 NGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 567 ~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~ 634 (684)
.+-.+.+++.++++|+.. ..+.||.--|.+|-.+.....+.-+ -+.+++..+++++.-
T Consensus 308 ~n~s~~ve~siidyla~l---sdGDaR~aLN~Lems~~m~~tr~g~-------~~~~~lSidDvke~l 365 (554)
T KOG2028|consen 308 PNSSMFVEDSIIDYLAYL---SDGDARAALNALEMSLSMFCTRSGQ-------SSRVLLSIDDVKEGL 365 (554)
T ss_pred CCcchhhhHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHhhcCC-------cccceecHHHHHHHH
Confidence 122346889999999986 3566888888888765433333221 245667766666543
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=1.8e-14 Score=170.24 Aligned_cols=188 Identities=20% Similarity=0.278 Sum_probs=135.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.|+|+++.++.+.+.+.+. .+.++||+||||||||++|+++|+.+
T Consensus 183 ~~igr~~ei~~~~~~L~~~--------------------------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR--------------------------------KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred cccCcHHHHHHHHHHHhcC--------------------------------CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4799999999888777411 12789999999999999999999987
Q ss_pred -------CCCEEEEecccccc-cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 355 -------NVPFVIADATTLTQ-ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~i~~s~l~~-s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
+..++.++++.+.. ..|.|+. +..++++++.+.. ..+.||||||||.+.......+++ ..++
T Consensus 231 ~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~~~-----~~~~ 300 (731)
T TIGR02639 231 KVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATSGGS-----MDAS 300 (731)
T ss_pred CCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCCCcc-----HHHH
Confidence 56788999887763 4688865 7788888876432 357899999999998652211111 1267
Q ss_pred HHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhh
Q 005670 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~ 506 (684)
+.|+..|+. ..+.+|.++|..+..+.+
T Consensus 301 ~~L~~~l~~-----------------------g~i~~IgaTt~~e~~~~~------------------------------ 327 (731)
T TIGR02639 301 NLLKPALSS-----------------------GKLRCIGSTTYEEYKNHF------------------------------ 327 (731)
T ss_pred HHHHHHHhC-----------------------CCeEEEEecCHHHHHHHh------------------------------
Confidence 888888871 136778887732211111
Q ss_pred HHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhc
Q 005670 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 507 ~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a 585 (684)
...|.|.+||. +|.+.+++.++..+|++.. ..+|.. ...+.++++++++++..+
T Consensus 328 ---------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~----~~~~e~-----~~~v~i~~~al~~~~~ls 381 (731)
T TIGR02639 328 ---------------EKDRALSRRFQ-KIDVGEPSIEETVKILKGL----KEKYEE-----FHHVKYSDEALEAAVELS 381 (731)
T ss_pred ---------------hhhHHHHHhCc-eEEeCCCCHHHHHHHHHHH----HHHHHh-----ccCcccCHHHHHHHHHhh
Confidence 12477888997 7899999999999999863 333332 225789999999998864
No 103
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=8.5e-14 Score=157.51 Aligned_cols=186 Identities=29% Similarity=0.353 Sum_probs=129.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.++||+.+++.|..++.... .++++||+||||||||++|+++|+.+++.
T Consensus 22 dliGq~~vv~~L~~ai~~~r-------------------------------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-------------------------------LAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 37999999999988875210 12789999999999999999999999652
Q ss_pred ----------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 358 ----------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 358 ----------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
++.+|+ +.-.| ...++.++..+......+...|++|||+|.+..
T Consensus 71 ~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eida-----as~~~---vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 71 ALITENTTIKTCEQCTNCISFNNHNHPDIIEIDA-----ASKTS---VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred cccccCcCcCCCCCChHHHHHhcCCCCcEEEeec-----cCCCC---HHHHHHHHHHHHhccccCCcEEEEEEChhhcCH
Confidence 111221 11122 233555555443322335678999999999976
Q ss_pred ccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCc
Q 005670 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~ 489 (684)
. .++.|++.||. ....++||++++.. +
T Consensus 143 ~--------------a~naLLk~LEe---------------------pp~~~vfI~aTte~--~---------------- 169 (507)
T PRK06645 143 G--------------AFNALLKTLEE---------------------PPPHIIFIFATTEV--Q---------------- 169 (507)
T ss_pred H--------------HHHHHHHHHhh---------------------cCCCEEEEEEeCCh--H----------------
Confidence 5 89999999982 12246777765511 1
Q ss_pred ccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCc
Q 005670 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi 569 (684)
.+.+.+.+|+. ++.|.+++.+++..+++..+. ..
T Consensus 170 --------------------------------kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~-----------~e-- 203 (507)
T PRK06645 170 --------------------------------KIPATIISRCQ-RYDLRRLSFEEIFKLLEYITK-----------QE-- 203 (507)
T ss_pred --------------------------------HhhHHHHhcce-EEEccCCCHHHHHHHHHHHHH-----------Hc--
Confidence 12244666763 789999999999998876322 12
Q ss_pred cccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 570 ~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.+.+++++++.|+.. .+++.|.+-+.++.++.
T Consensus 204 gi~ie~eAL~~Ia~~---s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 204 NLKTDIEALRIIAYK---SEGSARDAVSILDQAAS 235 (507)
T ss_pred CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 467899999999996 35678999999988764
No 104
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=5.7e-14 Score=166.68 Aligned_cols=186 Identities=25% Similarity=0.274 Sum_probs=126.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.||||+.+++.|..++..... .+.+||+||+|||||++|+.||+.+++.
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri-------------------------------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRI-------------------------------NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 379999999999988852111 2568999999999999999999999752
Q ss_pred --------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccc
Q 005670 358 --------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 358 --------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r 411 (684)
|+.++.. ...|. ..++++.....+........|+||||+|+|...
T Consensus 65 ~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaa-----s~~~V---d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~- 135 (824)
T PRK07764 65 EGPTSTPCGECDSCVALAPGGPGSLDVTEIDAA-----SHGGV---DDARELRERAFFAPAESRYKIFIIDEAHMVTPQ- 135 (824)
T ss_pred cCCCCCCCcccHHHHHHHcCCCCCCcEEEeccc-----ccCCH---HHHHHHHHHHHhchhcCCceEEEEechhhcCHH-
Confidence 2222221 11222 233443332222112346689999999999876
Q ss_pred ccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccc
Q 005670 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~ 491 (684)
.+|.||+.||+ -..+++||++++.. ++
T Consensus 136 -------------a~NaLLK~LEE---------------------pP~~~~fIl~tt~~--~k----------------- 162 (824)
T PRK07764 136 -------------GFNALLKIVEE---------------------PPEHLKFIFATTEP--DK----------------- 162 (824)
T ss_pred -------------HHHHHHHHHhC---------------------CCCCeEEEEEeCCh--hh-----------------
Confidence 89999999993 12247777766521 11
Q ss_pred ccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccc
Q 005670 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l 571 (684)
+.+.+++|+. ++.|.+++.+++.++|...+ ..+ .+
T Consensus 163 -------------------------------Ll~TIrSRc~-~v~F~~l~~~~l~~~L~~il-----------~~E--Gv 197 (824)
T PRK07764 163 -------------------------------VIGTIRSRTH-HYPFRLVPPEVMRGYLERIC-----------AQE--GV 197 (824)
T ss_pred -------------------------------hhHHHHhhee-EEEeeCCCHHHHHHHHHHHH-----------HHc--CC
Confidence 1233455553 78999999999998876522 222 46
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 572 HFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 572 ~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.++++++.+|+..+ +++.|.+.++|++++.
T Consensus 198 ~id~eal~lLa~~s---gGdlR~Al~eLEKLia 227 (824)
T PRK07764 198 PVEPGVLPLVIRAG---GGSVRDSLSVLDQLLA 227 (824)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 68999999999963 4568999999998773
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.7e-14 Score=159.71 Aligned_cols=186 Identities=25% Similarity=0.302 Sum_probs=127.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... -++.+||+||+|||||++|+++|+.+++.
T Consensus 14 eivGq~~i~~~L~~~i~~~r-------------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR-------------------------------INHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 37999999999999885210 02558999999999999999999998742
Q ss_pred --------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccc
Q 005670 358 --------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 358 --------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r 411 (684)
++.+|++ ...|.+ .++++.......-..+...|++|||+|.+...
T Consensus 63 ~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaa-----s~~gvd---~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~- 133 (584)
T PRK14952 63 QGPTATPCGVCESCVALAPNGPGSIDVVELDAA-----SHGGVD---DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA- 133 (584)
T ss_pred cCCCCCcccccHHHHHhhcccCCCceEEEeccc-----cccCHH---HHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-
Confidence 2222221 122322 23333333222112346689999999999876
Q ss_pred ccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccc
Q 005670 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~ 491 (684)
.+++||+.||. ...+++||++++.. +
T Consensus 134 -------------A~NALLK~LEE---------------------pp~~~~fIL~tte~--~------------------ 159 (584)
T PRK14952 134 -------------GFNALLKIVEE---------------------PPEHLIFIFATTEP--E------------------ 159 (584)
T ss_pred -------------HHHHHHHHHhc---------------------CCCCeEEEEEeCCh--H------------------
Confidence 89999999992 12357778776511 0
Q ss_pred ccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccc
Q 005670 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l 571 (684)
.+.+.+++|. .++.|.+++.+++.+.+...+ ... .+
T Consensus 160 ------------------------------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~-----------~~e--gi 195 (584)
T PRK14952 160 ------------------------------KVLPTIRSRT-HHYPFRLLPPRTMRALIARIC-----------EQE--GV 195 (584)
T ss_pred ------------------------------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHH-----------HHc--CC
Confidence 1334566664 389999999999888775522 112 46
Q ss_pred cccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 572 HFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 572 ~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.++++++..|++. .+++.|.+.++++.++.
T Consensus 196 ~i~~~al~~Ia~~---s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 196 VVDDAVYPLVIRA---GGGSPRDTLSVLDQLLA 225 (584)
T ss_pred CCCHHHHHHHHHH---cCCCHHHHHHHHHHHHh
Confidence 7899999999986 35668999999988764
No 106
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=9e-15 Score=134.10 Aligned_cols=110 Identities=30% Similarity=0.553 Sum_probs=84.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~ 412 (684)
+||+||||||||++|+.+|+.++.+++.+++.++. ..+.+.. .+.+...+..+... ..++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~-~~~i~~~~~~~~~~---~~~~vl~iDe~d~l~~~~- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDS-EQKIRDFFKKAKKS---AKPCVLFIDEIDKLFPKS- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHH-HHHHHHHHHHHHHT---STSEEEEEETGGGTSHHC-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccc-cccccccccccccc---ccceeeeeccchhccccc-
Confidence 68999999999999999999999999999999987 5666666 66777777764321 137999999999998874
Q ss_pred cccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccC
Q 005670 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn 468 (684)
....+.....+++.|+..|+.... ..+++++|+++|
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~~~~------------------~~~~~~vI~ttn 110 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDNPSS------------------KNSRVIVIATTN 110 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHTTTT------------------TSSSEEEEEEES
T ss_pred --ccccccccccccceeeeccccccc------------------ccccceeEEeeC
Confidence 222334445688999999983110 024589999988
No 107
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.3e-14 Score=157.17 Aligned_cols=223 Identities=23% Similarity=0.306 Sum_probs=157.7
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
..|.|++.+|+.+.+++..+..|.... .....+..++||.||||+|||+|+++||.++++
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F--------------------~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~a 212 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLF--------------------LGLREPVRGLLLFGPPGTGKTMLAKAIATESGA 212 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhh--------------------hccccccchhheecCCCCchHHHHHHHHhhhcc
Confidence 358999999999999998665542211 122223579999999999999999999999999
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
.|+.+.++.++ ++|+|+. +..++.+|.-|.. .+++||||||||++..+|.. ......+.....+|-.+++.
T Consensus 213 tff~iSassLt-sK~~Ge~-eK~vralf~vAr~----~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~ 283 (428)
T KOG0740|consen 213 TFFNISASSLT-SKYVGES-EKLVRALFKVARS----LQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGK 283 (428)
T ss_pred eEeeccHHHhh-hhccChH-HHHHHHHHHHHHh----cCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccc
Confidence 99999999999 8999998 8999999988764 48999999999999988732 22333334555555555532
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
.. .. -.++++|.|+|... .
T Consensus 284 ~s-----------~~------~drvlvigaTN~P~------------------------------------e-------- 302 (428)
T KOG0740|consen 284 NS-----------AP------DDRVLVIGATNRPW------------------------------------E-------- 302 (428)
T ss_pred cC-----------CC------CCeEEEEecCCCch------------------------------------H--------
Confidence 11 01 11588888887321 0
Q ss_pred hhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHH
Q 005670 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (684)
+...++.||.-++.++.++.+....++.. + +..+ .-.+++..++.|++. ..+++.-.+.
T Consensus 303 ------~Dea~~Rrf~kr~yiplPd~etr~~~~~~----l-------l~~~--~~~l~~~d~~~l~~~--Tegysgsdi~ 361 (428)
T KOG0740|consen 303 ------LDEAARRRFVKRLYIPLPDYETRSLLWKQ----L-------LKEQ--PNGLSDLDISLLAKV--TEGYSGSDIT 361 (428)
T ss_pred ------HHHHHHHHhhceeeecCCCHHHHHHHHHH----H-------HHhC--CCCccHHHHHHHHHH--hcCcccccHH
Confidence 01223446666788888888888877664 2 2222 445778888899985 5666666777
Q ss_pred HHHHHHHHHHHhcC
Q 005670 597 SLLENILMDAMYEI 610 (684)
Q Consensus 597 ~iIe~~l~~al~e~ 610 (684)
.++..+......+.
T Consensus 362 ~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 362 ALCKEAAMGPLREL 375 (428)
T ss_pred HHHHHhhcCchhhc
Confidence 77776665544443
No 108
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.7e-14 Score=158.45 Aligned_cols=186 Identities=25% Similarity=0.291 Sum_probs=126.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
.|+||+.+++.|..++.... .++.+||+||+|||||++|+.+|+.+++
T Consensus 17 diiGq~~~v~~L~~~i~~~r-------------------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-------------------------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37999999999998885210 0256899999999999999999998864
Q ss_pred -----------------------CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 357 -----------------------PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 357 -----------------------pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
.++.++.. ...|.+ .++.++.........+...|++|||+|++...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~~~~~dlieidaa-----s~~gvd---~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~--- 134 (546)
T PRK14957 66 TGVTAEPCNKCENCVAINNNSFIDLIEIDAA-----SRTGVE---ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ--- 134 (546)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEeecc-----cccCHH---HHHHHHHHHHhhhhcCCcEEEEEechhhccHH---
Confidence 12222221 223332 23333333222222345679999999999876
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.||+.||+. ...++||++++. ..
T Consensus 135 -----------a~naLLK~LEep---------------------p~~v~fIL~Ttd--~~-------------------- 160 (546)
T PRK14957 135 -----------SFNALLKTLEEP---------------------PEYVKFILATTD--YH-------------------- 160 (546)
T ss_pred -----------HHHHHHHHHhcC---------------------CCCceEEEEECC--hh--------------------
Confidence 899999999930 123666666541 10
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+++|+. ++.|.+++.+++.+.+...+ ... .+.+
T Consensus 161 ----------------------------kil~tI~SRc~-~~~f~~Ls~~eI~~~L~~il-----------~~e--gi~~ 198 (546)
T PRK14957 161 ----------------------------KIPVTILSRCI-QLHLKHISQADIKDQLKIIL-----------AKE--NINS 198 (546)
T ss_pred ----------------------------hhhhhHHHhee-eEEeCCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 12244666773 89999999999988776522 112 4678
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|+..+ +++.|.+-+.++.++.
T Consensus 199 e~~Al~~Ia~~s---~GdlR~alnlLek~i~ 226 (546)
T PRK14957 199 DEQSLEYIAYHA---KGSLRDALSLLDQAIS 226 (546)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999963 5668999999987764
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1e-13 Score=159.77 Aligned_cols=185 Identities=24% Similarity=0.327 Sum_probs=125.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (684)
||||+.+++.|..++..... ++.+||+||+|||||++|+++|+.+++.
T Consensus 18 viGQe~vv~~L~~~l~~~rl-------------------------------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~ 66 (618)
T PRK14951 18 MVGQEHVVQALTNALTQQRL-------------------------------HHAYLFTGTRGVGKTTVSRILAKSLNCQG 66 (618)
T ss_pred hcCcHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 68999999999998852111 2677999999999999999999999751
Q ss_pred ----------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 358 ----------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 358 ----------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
++.+|. +...|. ..+++++....+.-......|++|||+|.|..
T Consensus 67 ~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~elda-----as~~~V---d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 67 PDGQGGITATPCGVCQACRDIDSGRFVDYTELDA-----ASNRGV---DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN 138 (618)
T ss_pred cccccCCCCCCCCccHHHHHHHcCCCCceeecCc-----ccccCH---HHHHHHHHHHHhCcccCCceEEEEEChhhCCH
Confidence 222222 112222 23455554432222223467999999999987
Q ss_pred ccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCc
Q 005670 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~ 489 (684)
. .+|.||+.||+ ....++||++++.. .
T Consensus 139 ~--------------a~NaLLKtLEE---------------------PP~~~~fIL~Ttd~--~---------------- 165 (618)
T PRK14951 139 T--------------AFNAMLKTLEE---------------------PPEYLKFVLATTDP--Q---------------- 165 (618)
T ss_pred H--------------HHHHHHHhccc---------------------CCCCeEEEEEECCc--h----------------
Confidence 6 89999999983 11246677766511 0
Q ss_pred ccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCc
Q 005670 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi 569 (684)
.+.+.+++|+. ++.|.+++.+++.+.+...+ ...
T Consensus 166 --------------------------------kil~TIlSRc~-~~~f~~Ls~eei~~~L~~i~-----------~~e-- 199 (618)
T PRK14951 166 --------------------------------KVPVTVLSRCL-QFNLRPMAPETVLEHLTQVL-----------AAE-- 199 (618)
T ss_pred --------------------------------hhhHHHHHhce-eeecCCCCHHHHHHHHHHHH-----------HHc--
Confidence 11233556663 89999999999988876522 112
Q ss_pred cccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 570 ~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.+.++++++++|++. .+++.|.+.++++.++.
T Consensus 200 gi~ie~~AL~~La~~---s~GslR~al~lLdq~ia 231 (618)
T PRK14951 200 NVPAEPQALRLLARA---ARGSMRDALSLTDQAIA 231 (618)
T ss_pred CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 567899999999996 34567888888776553
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.3e-13 Score=158.19 Aligned_cols=185 Identities=28% Similarity=0.336 Sum_probs=125.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++..... ++.+||+||+|||||++|+.+|+.+++.
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri-------------------------------~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRV-------------------------------APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 369999999999988852100 2689999999999999999999999753
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.++.. ...|.+..+.+.+.+...+ ......||||||+|.|...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a-----~~~~Id~iR~L~~~~~~~p---~~g~~kVIIIDEad~Lt~~--- 134 (624)
T PRK14959 66 TAPTGEPCNTCEQCRKVTQGMHVDVVEIDGA-----SNRGIDDAKRLKEAIGYAP---MEGRYKVFIIDEAHMLTRE--- 134 (624)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEEecc-----cccCHHHHHHHHHHHHhhh---hcCCceEEEEEChHhCCHH---
Confidence 3333321 1122222223333333222 1245679999999999876
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.||+.||. ...+++||++++...
T Consensus 135 -----------a~naLLk~LEE---------------------P~~~~ifILaTt~~~---------------------- 160 (624)
T PRK14959 135 -----------AFNALLKTLEE---------------------PPARVTFVLATTEPH---------------------- 160 (624)
T ss_pred -----------HHHHHHHHhhc---------------------cCCCEEEEEecCChh----------------------
Confidence 89999999982 112467777665210
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+++|+. ++.|.+++.+++.+++...+. .. .+.+
T Consensus 161 ----------------------------kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~-----------~e--gi~i 198 (624)
T PRK14959 161 ----------------------------KFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLG-----------RE--GVDY 198 (624)
T ss_pred ----------------------------hhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHH-----------Hc--CCCC
Confidence 12233556664 689999999999988765221 11 4668
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
++++++.|++.+ ++++|.+-++++.++
T Consensus 199 d~eal~lIA~~s---~GdlR~Al~lLeqll 225 (624)
T PRK14959 199 DPAAVRLIARRA---AGSVRDSMSLLGQVL 225 (624)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999964 455788888887653
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=8.6e-14 Score=160.62 Aligned_cols=186 Identities=27% Similarity=0.330 Sum_probs=127.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... .++.+||+||+|||||++|+++|+.++++
T Consensus 17 dIIGQe~vv~~L~~ai~~~r-------------------------------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR-------------------------------LHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 37999999999999885210 12678999999999999999999998653
Q ss_pred E------------------------EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 F------------------------VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 f------------------------v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
- +.++. +.-.| ...+++++......-......||||||+|.+...
T Consensus 66 ~~~~~~pCg~C~sCr~i~~g~~~DvlEida-----As~~g---Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~--- 134 (709)
T PRK08691 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDA-----ASNTG---IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS--- 134 (709)
T ss_pred CCCCCCCCcccHHHHHHhccCccceEEEec-----cccCC---HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH---
Confidence 1 11111 11122 2345555554332222245679999999998765
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.||+.||. ...+++||++++...
T Consensus 135 -----------A~NALLKtLEE---------------------Pp~~v~fILaTtd~~---------------------- 160 (709)
T PRK08691 135 -----------AFNAMLKTLEE---------------------PPEHVKFILATTDPH---------------------- 160 (709)
T ss_pred -----------HHHHHHHHHHh---------------------CCCCcEEEEEeCCcc----------------------
Confidence 89999999982 112466777665110
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+++|+- .+.|.+++.+++...+...+ ... .+.+
T Consensus 161 ----------------------------kL~~TIrSRC~-~f~f~~Ls~eeI~~~L~~Il-----------~kE--gi~i 198 (709)
T PRK08691 161 ----------------------------KVPVTVLSRCL-QFVLRNMTAQQVADHLAHVL-----------DSE--KIAY 198 (709)
T ss_pred ----------------------------ccchHHHHHHh-hhhcCCCCHHHHHHHHHHHH-----------HHc--CCCc
Confidence 12234556663 68889999999988876522 222 4678
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|++.+ .++.|.+.++++.++.
T Consensus 199 d~eAL~~Ia~~A---~GslRdAlnLLDqaia 226 (709)
T PRK08691 199 EPPALQLLGRAA---AGSMRDALSLLDQAIA 226 (709)
T ss_pred CHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 999999999973 5678999999988765
No 112
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.1e-13 Score=154.63 Aligned_cols=186 Identities=27% Similarity=0.308 Sum_probs=126.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... .++.+||+||||||||++|+++|+.+.+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-------------------------------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-------------------------------LGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 37999999999998885210 12567999999999999999999998531
Q ss_pred -----------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccc
Q 005670 358 -----------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~ 414 (684)
++.++.+ ...|. ..++++..............||+|||+|.+...
T Consensus 64 ~~~~~~cg~C~sc~~i~~~~h~dv~el~~~-----~~~~v---d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~---- 131 (504)
T PRK14963 64 GEDPKPCGECESCLAVRRGAHPDVLEIDAA-----SNNSV---EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS---- 131 (504)
T ss_pred CCCCCCCCcChhhHHHhcCCCCceEEeccc-----ccCCH---HHHHHHHHHHhhccccCCCeEEEEECccccCHH----
Confidence 3333322 11222 223443322211111245689999999998765
Q ss_pred cCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccc
Q 005670 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~ 494 (684)
.++.|++.|+. ...+++||++++...
T Consensus 132 ----------a~naLLk~LEe---------------------p~~~t~~Il~t~~~~----------------------- 157 (504)
T PRK14963 132 ----------AFNALLKTLEE---------------------PPEHVIFILATTEPE----------------------- 157 (504)
T ss_pred ----------HHHHHHHHHHh---------------------CCCCEEEEEEcCChh-----------------------
Confidence 89999999982 122466666655110
Q ss_pred cccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc
Q 005670 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s 574 (684)
.+.+.+.+|+. ++.|.+++.+++...+...+ ... .+.++
T Consensus 158 ---------------------------kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~-----------~~e--gi~i~ 196 (504)
T PRK14963 158 ---------------------------KMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLL-----------EAE--GREAE 196 (504)
T ss_pred ---------------------------hCChHHhcceE-EEEecCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 13355667765 79999999999998876522 222 45679
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++|+..+ +++.|.+.+.+++++.
T Consensus 197 ~~Al~~ia~~s---~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 197 PEALQLVARLA---DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 99999999973 5678999999998754
No 113
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.9e-13 Score=157.43 Aligned_cols=186 Identities=24% Similarity=0.295 Sum_probs=126.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+++++.|..++.... -++.+||+||+|+|||++|+++|+.++++
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~-------------------------------~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR-------------------------------VAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 47999999999998885210 12678999999999999999999998642
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.+++. ...|.+ .++++.....+.-..+...|++|||+|.+...
T Consensus 66 ~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~-----s~~~v~---~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~--- 134 (576)
T PRK14965 66 QGLTAEPCNVCPPCVEITEGRSVDVFEIDGA-----SNTGVD---DIRELRENVKYLPSRSRYKIFIIDEVHMLSTN--- 134 (576)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeeeeecc-----CccCHH---HHHHHHHHHHhccccCCceEEEEEChhhCCHH---
Confidence 2223221 122322 24444433222212346689999999999876
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.+++||+.||+ ...+++||++++.. +
T Consensus 135 -----------a~naLLk~LEe---------------------pp~~~~fIl~t~~~--~-------------------- 160 (576)
T PRK14965 135 -----------AFNALLKTLEE---------------------PPPHVKFIFATTEP--H-------------------- 160 (576)
T ss_pred -----------HHHHHHHHHHc---------------------CCCCeEEEEEeCCh--h--------------------
Confidence 89999999983 12247777766511 1
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
. +.+.+++|+. ++.|.+++.+++...+...+ ... .+.+
T Consensus 161 ----------k------------------l~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~-----------~~e--gi~i 198 (576)
T PRK14965 161 ----------K------------------VPITILSRCQ-RFDFRRIPLQKIVDRLRYIA-----------DQE--GISI 198 (576)
T ss_pred ----------h------------------hhHHHHHhhh-hhhcCCCCHHHHHHHHHHHH-----------HHh--CCCC
Confidence 1 2234555554 78999999999887776522 112 5678
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++..|+..+ +++.|.+.+.++.++.
T Consensus 199 ~~~al~~la~~a---~G~lr~al~~Ldqlia 226 (576)
T PRK14965 199 SDAALALVARKG---DGSMRDSLSTLDQVLA 226 (576)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999973 4568888888887654
No 114
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.8e-13 Score=156.02 Aligned_cols=186 Identities=25% Similarity=0.336 Sum_probs=125.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... .++.+||+||||+|||++|+.+|+.+++.
T Consensus 17 divGq~~v~~~L~~~i~~~~-------------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR-------------------------------LHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999998885210 02567999999999999999999999652
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.++++ ...+. ..+++++......-......|++|||+|++...
T Consensus 66 ~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~-----~~~~v---d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~--- 134 (527)
T PRK14969 66 TGVTATPCGVCSACLEIDSGRFVDLIEVDAA-----SNTQV---DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS--- 134 (527)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceeEeecc-----ccCCH---HHHHHHHHHHhhCcccCCceEEEEcCcccCCHH---
Confidence 1222211 11222 234555443322222345679999999999876
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.+|.||+.||+ ...+++||++++...
T Consensus 135 -----------a~naLLK~LEe---------------------pp~~~~fIL~t~d~~---------------------- 160 (527)
T PRK14969 135 -----------AFNAMLKTLEE---------------------PPEHVKFILATTDPQ---------------------- 160 (527)
T ss_pred -----------HHHHHHHHHhC---------------------CCCCEEEEEEeCChh----------------------
Confidence 89999999983 112467777665110
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+++|+- ++.|.+++.+++.+.+...+ ... .+.+
T Consensus 161 ----------------------------kil~tI~SRc~-~~~f~~l~~~~i~~~L~~il-----------~~e--gi~~ 198 (527)
T PRK14969 161 ----------------------------KIPVTVLSRCL-QFNLKQMPPPLIVSHLQHIL-----------EQE--NIPF 198 (527)
T ss_pred ----------------------------hCchhHHHHHH-HHhcCCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 12233455552 79999999999888775522 222 4668
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|++.+ +++.|...+.++.++.
T Consensus 199 ~~~al~~la~~s---~Gslr~al~lldqai~ 226 (527)
T PRK14969 199 DATALQLLARAA---AGSMRDALSLLDQAIA 226 (527)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999963 4557888888887664
No 115
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.4e-13 Score=162.78 Aligned_cols=221 Identities=21% Similarity=0.296 Sum_probs=162.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.|.|.+.++..|.+.|..++........- + -.||+++||+||||||||++|+++|..+.
T Consensus 266 ~vggl~~~i~~LKEmVl~PLlyPE~f~~~-------~------------itpPrgvL~~GppGTGkTl~araLa~~~s~~ 326 (1080)
T KOG0732|consen 266 SVGGLENYINQLKEMVLLPLLYPEFFDNF-------N------------ITPPRGVLFHGPPGTGKTLMARALAAACSRG 326 (1080)
T ss_pred ccccHHHHHHHHHHHHHhHhhhhhHhhhc-------c------------cCCCcceeecCCCCCchhHHHHhhhhhhccc
Confidence 37999999999999998765532211100 0 12358999999999999999999999983
Q ss_pred ---CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHH
Q 005670 356 ---VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 356 ---~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
..|+.-+.++.. ++|+|+. +.+++-+|+.+.. .++.|||+||||-+++.|.... +..+..+...||.+
T Consensus 327 ~~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k----~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaL 397 (1080)
T KOG0732|consen 327 NRKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQK----TQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLAL 397 (1080)
T ss_pred ccccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhc----cCceEEeccccccccccccchH---HHhhhhHHHHHHHh
Confidence 346555666666 7999998 8899999998764 5899999999999998765432 44455689999999
Q ss_pred HcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhh
Q 005670 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~ 512 (684)
|+|- +.+| .+++|.++|..+
T Consensus 398 mdGl-----------dsRg--------qVvvigATnRpd----------------------------------------- 417 (1080)
T KOG0732|consen 398 MDGL-----------DSRG--------QVVVIGATNRPD----------------------------------------- 417 (1080)
T ss_pred ccCC-----------CCCC--------ceEEEcccCCcc-----------------------------------------
Confidence 9961 1222 377777777432
Q ss_pred ccchhhhhhcCcccc--ccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCC
Q 005670 513 VESSDLIAYGLIPEF--VGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (684)
Q Consensus 513 v~~~dll~~~f~PeL--l~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~ 590 (684)
...|++ .+|||..+.|+-.+.++..+|+..+ .....-.++...+.+|++. ..++
T Consensus 418 ---------a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ih-------------trkw~~~i~~~l~~~la~~--t~gy 473 (1080)
T KOG0732|consen 418 ---------AIDPALRRPGRFDREFYFPLPDVDARAKILDIH-------------TRKWEPPISRELLLWLAEE--TSGY 473 (1080)
T ss_pred ---------ccchhhcCCcccceeEeeeCCchHHHHHHHHHh-------------ccCCCCCCCHHHHHHHHHh--cccc
Confidence 123555 5899999999999999999988652 1122456788899999995 5566
Q ss_pred CHHHHHHHHHHHHHHHHhcC
Q 005670 591 GARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 591 GAR~Lr~iIe~~l~~al~e~ 610 (684)
+...|+.+...+.+.++.+-
T Consensus 474 ~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 474 GGADLKALCTEAALIALRRS 493 (1080)
T ss_pred chHHHHHHHHHHhhhhhccc
Confidence 65669988888777776544
No 116
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.51 E-value=3.7e-13 Score=156.17 Aligned_cols=213 Identities=26% Similarity=0.363 Sum_probs=132.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (684)
++||+.+++.+...+...+ +.+++|+||||||||++|+++++..
T Consensus 156 iiGqs~~~~~l~~~ia~~~--------------------------------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~ 203 (615)
T TIGR02903 156 IVGQERAIKALLAKVASPF--------------------------------PQHIILYGPPGVGKTTAARLALEEAKKLK 203 (615)
T ss_pred ceeCcHHHHHHHHHHhcCC--------------------------------CCeEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 7999999998766553110 2689999999999999999998776
Q ss_pred ------CCCEEEEecccccc------cccccchhHHH---HHHHHh------cccchHhhhcCcEEEEeccccccccccc
Q 005670 355 ------NVPFVIADATTLTQ------ARYVGEDVESI---LYKLLT------VSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 355 ------~~pfv~i~~s~l~~------s~yvG~~~~~~---l~~l~~------~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
+.+|+.++|+.+.. ..++|...... ....+. ...+.+..+.+|+|||||++.|...
T Consensus 204 ~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--- 280 (615)
T TIGR02903 204 HTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--- 280 (615)
T ss_pred CCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH---
Confidence 35799999976530 11222110000 111111 1233455677899999999999887
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeE---------EEeccceEEEeccCcccHHHHHHhccccCC
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNI---------QIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i---------~id~~niIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
.|+.|+++|+...+.+.. +. .+.....+ .....++++|++++...
T Consensus 281 -----------~Q~~Ll~~Le~~~v~~~~-~~-~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~------------- 334 (615)
T TIGR02903 281 -----------LQNKLLKVLEDKRVEFSS-SY-YDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP------------- 334 (615)
T ss_pred -----------HHHHHHHHHhhCeEEeec-ce-eccCCcccchhhhhhcccCccceEEEEEeccccc-------------
Confidence 899999999854433211 00 00000000 00122355555544110
Q ss_pred CCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHH
Q 005670 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 485 lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~ 564 (684)
..+.|.|++|+. .+.|++++.+++..|++..+..
T Consensus 335 ------------------------------------~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~--------- 368 (615)
T TIGR02903 335 ------------------------------------EEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEK--------- 368 (615)
T ss_pred ------------------------------------cccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHH---------
Confidence 013467888887 5789999999999998863221
Q ss_pred HhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 005670 565 QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 565 ~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
. .+.+++++++.|+++ .| .+|..-++|+.++...
T Consensus 369 --~--~v~ls~eal~~L~~y--s~--~gRraln~L~~~~~~~ 402 (615)
T TIGR02903 369 --I--NVHLAAGVEELIARY--TI--EGRKAVNILADVYGYA 402 (615)
T ss_pred --c--CCCCCHHHHHHHHHC--CC--cHHHHHHHHHHHHHHH
Confidence 1 356899999999995 45 3366667777765443
No 117
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=3.1e-13 Score=155.14 Aligned_cols=186 Identities=27% Similarity=0.355 Sum_probs=128.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+++++.|..++.... .++.+||+||+|||||++|+.+|+.++++
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-------------------------------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-------------------------------ISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 47999999999998885210 12678999999999999999999998642
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.++++ ...|. ..++.+..........+...|++|||+|.|...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa-----s~~~v---d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--- 134 (559)
T PRK05563 66 NPPDGEPCNECEICKAITNGSLMDVIEIDAA-----SNNGV---DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--- 134 (559)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeEEeecc-----ccCCH---HHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---
Confidence 3333332 11222 234444443322222356789999999999766
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.+++||+.||+ ...+++||++++...
T Consensus 135 -----------a~naLLKtLEe---------------------pp~~~ifIlatt~~~---------------------- 160 (559)
T PRK05563 135 -----------AFNALLKTLEE---------------------PPAHVIFILATTEPH---------------------- 160 (559)
T ss_pred -----------HHHHHHHHhcC---------------------CCCCeEEEEEeCChh----------------------
Confidence 89999999983 122477777765110
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.|.+++|+. .+.|.+++.+++.+++...+. .. .+.+
T Consensus 161 ----------------------------ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~-----------~e--gi~i 198 (559)
T PRK05563 161 ----------------------------KIPATILSRCQ-RFDFKRISVEDIVERLKYILD-----------KE--GIEY 198 (559)
T ss_pred ----------------------------hCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHH-----------Hc--CCCC
Confidence 13455667775 688999999999888765221 12 4678
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|+..+ +++.|.+.+.++.++.
T Consensus 199 ~~~al~~ia~~s---~G~~R~al~~Ldq~~~ 226 (559)
T PRK05563 199 EDEALRLIARAA---EGGMRDALSILDQAIS 226 (559)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999999999963 4678988888887654
No 118
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4e-13 Score=148.41 Aligned_cols=191 Identities=20% Similarity=0.256 Sum_probs=122.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.+... ++.+||+||||+|||++|+++|+.+.+.
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~-------------------------------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRV-------------------------------GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hccChHHHHHHHHHHHHhCCc-------------------------------ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999999888852111 2679999999999999999999999662
Q ss_pred E-E---------EEecc-----------------cccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 358 F-V---------IADAT-----------------TLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 358 f-v---------~i~~s-----------------~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
- . .-.|. .+....-.| -..++++..........+...||+|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~---id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~ 142 (397)
T PRK14955 66 RMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNS---VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA 142 (397)
T ss_pred CCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCC---HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH
Confidence 1 0 00010 010001111 1234444333311112345679999999999865
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~ 490 (684)
.++.|++.||. ....++||++++. ..+
T Consensus 143 --------------~~~~LLk~LEe---------------------p~~~t~~Il~t~~--~~k---------------- 169 (397)
T PRK14955 143 --------------AFNAFLKTLEE---------------------PPPHAIFIFATTE--LHK---------------- 169 (397)
T ss_pred --------------HHHHHHHHHhc---------------------CCCCeEEEEEeCC--hHH----------------
Confidence 78999999982 0113555555431 111
Q ss_pred cccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcc
Q 005670 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~ 570 (684)
+.+.+.+|.. ++.|.+++++++.+.+...+. .. .
T Consensus 170 --------------------------------l~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~-----------~~--g 203 (397)
T PRK14955 170 --------------------------------IPATIASRCQ-RFNFKRIPLEEIQQQLQGICE-----------AE--G 203 (397)
T ss_pred --------------------------------hHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHH-----------Hc--C
Confidence 1233444544 688999999999887765221 11 5
Q ss_pred ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+.+++++++.|+..+ +++.|.+.+.++.++.
T Consensus 204 ~~i~~~al~~l~~~s---~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 204 ISVDADALQLIGRKA---QGSMRDAQSILDQVIA 234 (397)
T ss_pred CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 679999999999973 4568888888887653
No 119
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.50 E-value=4.6e-13 Score=143.05 Aligned_cols=191 Identities=25% Similarity=0.330 Sum_probs=123.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--- 355 (684)
++|++++++.|..++... ...++||+||||||||++|+++++.+.
T Consensus 17 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSP--------------------------------NLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred hcCCHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 689999999998887410 014799999999999999999999984
Q ss_pred --CCEEEEeccccccc---------c---cccc------hhHHHHHHHHhcccchH-hhhcCcEEEEecccccccccccc
Q 005670 356 --VPFVIADATTLTQA---------R---YVGE------DVESILYKLLTVSDYNV-AAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 356 --~pfv~i~~s~l~~s---------~---yvG~------~~~~~l~~l~~~a~~~v-~~a~~gILfIDEIDkl~~~r~~~ 414 (684)
.+++.+++.++... . +.+. .....++.+++...... ......+|+|||+|.+...
T Consensus 65 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---- 140 (337)
T PRK12402 65 WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---- 140 (337)
T ss_pred cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH----
Confidence 35778888765310 0 0110 00122333222111100 0134579999999998765
Q ss_pred cCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccc
Q 005670 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~ 494 (684)
.++.|++.|+.. ..++.||++++...
T Consensus 141 ----------~~~~L~~~le~~---------------------~~~~~~Il~~~~~~----------------------- 166 (337)
T PRK12402 141 ----------AQQALRRIMEQY---------------------SRTCRFIIATRQPS----------------------- 166 (337)
T ss_pred ----------HHHHHHHHHHhc---------------------cCCCeEEEEeCChh-----------------------
Confidence 788899999720 11234555554110
Q ss_pred cccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc
Q 005670 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s 574 (684)
.+.+.+.+|.. .+.|.+++.+++.+++...+ ... .+.++
T Consensus 167 ---------------------------~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~-----------~~~--~~~~~ 205 (337)
T PRK12402 167 ---------------------------KLIPPIRSRCL-PLFFRAPTDDELVDVLESIA-----------EAE--GVDYD 205 (337)
T ss_pred ---------------------------hCchhhcCCce-EEEecCCCHHHHHHHHHHHH-----------HHc--CCCCC
Confidence 12345667763 78999999999988876521 122 45689
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 575 ENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+++++.|++.+ +++.|.+.+.++..+
T Consensus 206 ~~al~~l~~~~---~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 206 DDGLELIAYYA---GGDLRKAILTLQTAA 231 (337)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999999963 567888888777544
No 120
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.50 E-value=2e-13 Score=154.37 Aligned_cols=241 Identities=19% Similarity=0.247 Sum_probs=143.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.|+||+.+++.+..++. ...+++|+||||||||++|+.++..+.
T Consensus 193 dv~Gq~~~~~al~~aa~----------------------------------~g~~vlliG~pGsGKTtlar~l~~llp~~ 238 (499)
T TIGR00368 193 DIKGQQHAKRALEIAAA----------------------------------GGHNLLLFGPPGSGKTMLASRLQGILPPL 238 (499)
T ss_pred HhcCcHHHHhhhhhhcc----------------------------------CCCEEEEEecCCCCHHHHHHHHhcccCCC
Confidence 37999999988776652 026899999999999999999998652
Q ss_pred --------------------------CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 356 --------------------------VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 356 --------------------------~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
.||..++++... ...+|.. ....++.+..+++|||||||++++.+
T Consensus 239 ~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~-~~~~ggg--------~~~~pG~i~lA~~GvLfLDEi~e~~~ 309 (499)
T TIGR00368 239 TNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASK-PALVGGG--------PIPLPGEISLAHNGVLFLDELPEFKR 309 (499)
T ss_pred CCcEEEeccccccchhhhccccccccCCccccccccch-hhhhCCc--------cccchhhhhccCCCeEecCChhhCCH
Confidence 122222222111 1111110 11234566778899999999999988
Q ss_pred ccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCc
Q 005670 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~ 489 (684)
. +|+.|++.||...+.|...+.. ..-..++.+|+++|. +..|+..
T Consensus 310 ~--------------~~~~L~~~LE~~~v~i~r~g~~--------~~~pa~frlIaa~Np-------------cpcg~~~ 354 (499)
T TIGR00368 310 S--------------VLDALREPIEDGSISISRASAK--------IFYPARFQLVAAMNP-------------CPCGHYG 354 (499)
T ss_pred H--------------HHHHHHHHHHcCcEEEEecCcc--------eeccCCeEEEEecCC-------------cccCcCC
Confidence 7 9999999998555544322211 122357888998883 3345432
Q ss_pred ccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHH---------HHhchHHHHHHHH
Q 005670 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ---------VLTEPKNALGKQY 560 (684)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~---------Il~~~l~~L~kq~ 560 (684)
.....+ .+.+.....++. .+.++|++|||.++.+++++.+++.+ +-++...+-..|
T Consensus 355 ~~~~~c----~c~~~~~~~y~~----------~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q- 419 (499)
T TIGR00368 355 GKNTHC----RCSPQQISRYWN----------KLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQ- 419 (499)
T ss_pred CCcccc----cCCHHHHHHHhh----------hccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHH-
Confidence 211111 122222223333 36689999999999999987766533 111111111111
Q ss_pred HHHHHhc---Cc-----------cccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Q 005670 561 RKMFQMN---GV-----------KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDV 613 (684)
Q Consensus 561 ~~~~~~~---gi-----------~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~ 613 (684)
.++++.. .+ ...+++++.+.+.+..-.-+..+|+..+++. +...++++...
T Consensus 420 ~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--vArTiAdL~g~ 484 (499)
T TIGR00368 420 NIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--VARTIADLKEE 484 (499)
T ss_pred HHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHHHhhcCC
Confidence 1222111 01 1245777777766654445688999999996 55566666543
No 121
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.50 E-value=1.7e-13 Score=163.87 Aligned_cols=188 Identities=21% Similarity=0.263 Sum_probs=133.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.|+||++.++.+.+.+.+.. +.+++|+||||||||++|+.+|+.+.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~--------------------------------~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRR--------------------------------QNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred cccCCHHHHHHHHHHHhcCC--------------------------------cCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 48999999888888775221 26899999999999999999999872
Q ss_pred --------CCEEEEeccccc-ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 356 --------VPFVIADATTLT-QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 356 --------~pfv~i~~s~l~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
..++.++.+.+. ...|.|+- +..++.++..... ...+.||||||||.+...++. .++.| +.
T Consensus 236 ~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~-~~~~d-----~~ 305 (852)
T TIGR03345 236 DVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQ-AGQGD-----AA 305 (852)
T ss_pred CCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCc-ccccc-----HH
Confidence 347778887765 34677765 6778888876431 125689999999999875321 11222 55
Q ss_pred HHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhh
Q 005670 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~ 506 (684)
+.|+..|+. | .+.+|.+++..+..+.+
T Consensus 306 n~Lkp~l~~---------------G--------~l~~IgaTT~~e~~~~~------------------------------ 332 (852)
T TIGR03345 306 NLLKPALAR---------------G--------ELRTIAATTWAEYKKYF------------------------------ 332 (852)
T ss_pred HHhhHHhhC---------------C--------CeEEEEecCHHHHhhhh------------------------------
Confidence 678888871 1 36778887732211111
Q ss_pred HHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhc
Q 005670 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 507 ~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a 585 (684)
...|+|.+||. +|.+++++.++..+|++. +.+.|.. ...+.++++|++.++..+
T Consensus 333 ---------------~~d~AL~rRf~-~i~v~eps~~~~~~iL~~----~~~~~e~-----~~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 333 ---------------EKDPALTRRFQ-VVKVEEPDEETAIRMLRG----LAPVLEK-----HHGVLILDEAVVAAVELS 386 (852)
T ss_pred ---------------hccHHHHHhCe-EEEeCCCCHHHHHHHHHH----HHHhhhh-----cCCCeeCHHHHHHHHHHc
Confidence 13588999996 799999999999999864 4444433 135778999999888864
No 122
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.50 E-value=4.7e-13 Score=135.20 Aligned_cols=164 Identities=18% Similarity=0.256 Sum_probs=109.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
.+++|+||+|||||++|+++++.+ +.+++.++|+.+.. .. ...+... ....+|+|||+|.+
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~-~~---------~~~~~~~------~~~~lLvIDdi~~l 102 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ-AD---------PEVLEGL------EQADLVCLDDVEAI 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH-hH---------HHHHhhc------ccCCEEEEeChhhh
Confidence 689999999999999999999887 46788899887752 10 1111111 12369999999998
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
.... ..++.|..+++... ..+..+|++++... .+
T Consensus 103 ~~~~------------~~~~~L~~~l~~~~--------------------~~~~~iIits~~~~-~~------------- 136 (226)
T TIGR03420 103 AGQP------------EWQEALFHLYNRVR--------------------EAGGRLLIAGRAAP-AQ------------- 136 (226)
T ss_pred cCCh------------HHHHHHHHHHHHHH--------------------HcCCeEEEECCCCh-HH-------------
Confidence 6530 03667777776100 01123455555210 00
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc--eEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
+ ....+.|.+|+. ..+.+++++++++..+++..+.
T Consensus 137 ---------------------~-----------~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~----------- 173 (226)
T TIGR03420 137 ---------------------L-----------PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA----------- 173 (226)
T ss_pred ---------------------C-----------CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH-----------
Confidence 0 001145666663 6799999999998888754211
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.. .+.++++++++|++. |+++.|+|+++|+++-.
T Consensus 174 ~~--~~~~~~~~l~~L~~~---~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 174 RR--GLQLPDEVADYLLRH---GSRDMGSLMALLDALDR 207 (226)
T ss_pred Hc--CCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHH
Confidence 11 567999999999993 88889999999998554
No 123
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.49 E-value=3.3e-13 Score=146.21 Aligned_cols=228 Identities=21% Similarity=0.301 Sum_probs=140.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--- 355 (684)
|+||+++|..|..++.++. ..++||.|++|||||++|+++++.+.
T Consensus 19 ivGq~~~k~al~~~~~~p~--------------------------------~~~vli~G~~GtGKs~~ar~~~~~l~~~~ 66 (350)
T CHL00081 19 IVGQEEMKLALILNVIDPK--------------------------------IGGVMIMGDRGTGKSTTIRALVDLLPEIE 66 (350)
T ss_pred HhChHHHHHHHHHhccCCC--------------------------------CCeEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 8999999999998875321 26899999999999999999999883
Q ss_pred ----CCEEEEeccc---------------------------------ccccccccc-hhHHHHHHH-HhcccchHhhhcC
Q 005670 356 ----VPFVIADATT---------------------------------LTQARYVGE-DVESILYKL-LTVSDYNVAAAQQ 396 (684)
Q Consensus 356 ----~pfv~i~~s~---------------------------------l~~s~yvG~-~~~~~l~~l-~~~a~~~v~~a~~ 396 (684)
.||. .+... .++...+|. +.++.+..- ..-.++.+..+++
T Consensus 67 ~~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~ 145 (350)
T CHL00081 67 VVKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANR 145 (350)
T ss_pred ccCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCC
Confidence 2342 11100 001112221 111111110 0112556678889
Q ss_pred cEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHH
Q 005670 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i 476 (684)
|+||||||+.+.+. +|+.|++.|+...+.+...| ..... ..++++|+|.|..
T Consensus 146 GiL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G-------~s~~~-p~rfiviaT~np~------ 197 (350)
T CHL00081 146 GILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREG-------ISIRH-PARFVLVGSGNPE------ 197 (350)
T ss_pred CEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCC-------eeeec-CCCEEEEeccCcc------
Confidence 99999999999987 99999999984333322122 11122 2357777776621
Q ss_pred HhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCH-HHHHHHHhchHH-
Q 005670 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN- 554 (684)
Q Consensus 477 ~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLse-eel~~Il~~~l~- 554 (684)
+..|+++|++||...+.+..++. ++..+|++....
T Consensus 198 -------------------------------------------eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~ 234 (350)
T CHL00081 198 -------------------------------------------EGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSF 234 (350)
T ss_pred -------------------------------------------cCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhcc
Confidence 11377889999999999998874 777777765321
Q ss_pred -----HHHHHH--------HHHHH--hcCccccccHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHhcC
Q 005670 555 -----ALGKQY--------RKMFQ--MNGVKLHFTENALRLIAKKAISKN-TGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 555 -----~L~kq~--------~~~~~--~~gi~l~~s~eAl~~La~~a~~~~-~GAR~Lr~iIe~~l~~al~e~ 610 (684)
...++| .+... ..--.+.+++++++++++.+..-+ -|-|.-..+++..-..++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 306 (350)
T CHL00081 235 DKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEG 306 (350)
T ss_pred ccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcC
Confidence 001111 11111 111257899999999998765433 367777777766555555443
No 124
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.49 E-value=8.4e-13 Score=138.00 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=101.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc-ccccccc----hhHHHHHHHH--------------hcccchH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-QARYVGE----DVESILYKLL--------------TVSDYNV 391 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~-~s~yvG~----~~~~~l~~l~--------------~~a~~~v 391 (684)
.++||.||||||||++|+++|+.++.+|+.++|..-. .+.++|. .....+.... ...+-..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 6899999999999999999999999999999987422 2233332 1111111110 0111111
Q ss_pred hhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCccc
Q 005670 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (684)
Q Consensus 392 ~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~d 471 (684)
+...+++|+||||+++.++ +|+.|+.+||+..+.+|+.+.. +..+. ...++.+|+|+|...
T Consensus 102 A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~----~~~i~-~~~~frvIaTsN~~~ 162 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGT----SRYVD-VHPEFRVIFTSNPVE 162 (262)
T ss_pred HHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCC----CceEe-cCCCCEEEEeeCCcc
Confidence 2346789999999999887 9999999999777776643211 11111 234677888988321
Q ss_pred HHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhc
Q 005670 472 IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 472 Le~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~ 551 (684)
+. -.+.+.++|++||- .+.+..++.++..+|+..
T Consensus 163 ---------------~~------------------------------g~~~l~~aL~~R~~-~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 163 ---------------YA------------------------------GVHETQDALLDRLI-TIFMDYPDIDTETAILRA 196 (262)
T ss_pred ---------------cc------------------------------ceecccHHHHhhcE-EEECCCCCHHHHHHHHHH
Confidence 00 00013466888884 678888888888888875
No 125
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=7.8e-13 Score=151.75 Aligned_cols=186 Identities=20% Similarity=0.290 Sum_probs=125.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.+.. -++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 diiGqe~iv~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-------------------------------IANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 47999999999998885210 12679999999999999999999998642
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.+++.. -.+ -..++++..........+...|++|||+|.+...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-----~~~---vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~--- 134 (563)
T PRK06647 66 NGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-----NTS---VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--- 134 (563)
T ss_pred cCCCCCCCccchHHHHHHcCCCCCeEEecCcc-----cCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH---
Confidence 12222111 111 1234444322221112346689999999999876
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.||+.||. ...+++||++++. +.
T Consensus 135 -----------a~naLLK~LEe---------------------pp~~~vfI~~tte--~~-------------------- 160 (563)
T PRK06647 135 -----------AFNALLKTIEE---------------------PPPYIVFIFATTE--VH-------------------- 160 (563)
T ss_pred -----------HHHHHHHhhcc---------------------CCCCEEEEEecCC--hH--------------------
Confidence 89999999982 1124777776641 11
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+++|+. ++.|.+++.+++.+++...+ ... .+.+
T Consensus 161 ----------------------------kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~-----------~~e--gi~i 198 (563)
T PRK06647 161 ----------------------------KLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVC-----------LED--QIKY 198 (563)
T ss_pred ----------------------------HhHHHHHHhce-EEEecCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 12345666665 68999999999988776521 112 4678
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++++|+.. .+++.|.+.+.++.++.
T Consensus 199 d~eAl~lLa~~---s~GdlR~alslLdklis 226 (563)
T PRK06647 199 EDEALKWIAYK---STGSVRDAYTLFDQVVS 226 (563)
T ss_pred CHHHHHHHHHH---cCCCHHHHHHHHHHHHh
Confidence 99999999996 24568999999887653
No 126
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.5e-13 Score=154.67 Aligned_cols=192 Identities=26% Similarity=0.345 Sum_probs=138.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.+... .+.+||.||.|||||++||.+|+.+++.
T Consensus 17 evvGQe~v~~~L~nal~~~ri-------------------------------~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI-------------------------------AHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc-------------------------------hhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 369999999999999963211 2789999999999999999999999753
Q ss_pred E-------EE------------EecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCC
Q 005670 358 F-------VI------------ADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 358 f-------v~------------i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (684)
= .. +|..++..+.-.|.+ .++.+.+...+....+...|.+|||+|.+...
T Consensus 66 ~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVd---diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~-------- 134 (515)
T COG2812 66 NGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVD---DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ-------- 134 (515)
T ss_pred CCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChH---HHHHHHHHhccCCccccceEEEEecHHhhhHH--------
Confidence 1 10 111111112223433 35555555555445677899999999999887
Q ss_pred CCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccC
Q 005670 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~ 498 (684)
..|+||+.||+ ...+++||++++-
T Consensus 135 ------afNALLKTLEE---------------------PP~hV~FIlATTe----------------------------- 158 (515)
T COG2812 135 ------AFNALLKTLEE---------------------PPSHVKFILATTE----------------------------- 158 (515)
T ss_pred ------HHHHHhccccc---------------------CccCeEEEEecCC-----------------------------
Confidence 99999999984 2446899998771
Q ss_pred CCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHH
Q 005670 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 499 ~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl 578 (684)
...++.+++++++ .+.|..++.+++...+...+.. -.+.++++|+
T Consensus 159 ---~~Kip~TIlSRcq-------------------~f~fkri~~~~I~~~L~~i~~~-------------E~I~~e~~aL 203 (515)
T COG2812 159 ---PQKIPNTILSRCQ-------------------RFDFKRLDLEEIAKHLAAILDK-------------EGINIEEDAL 203 (515)
T ss_pred ---cCcCchhhhhccc-------------------cccccCCCHHHHHHHHHHHHHh-------------cCCccCHHHH
Confidence 2233444555554 6789999999888776653211 1678999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 005670 579 RLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 579 ~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
..|++. ..++.|...++++.++..
T Consensus 204 ~~ia~~---a~Gs~RDalslLDq~i~~ 227 (515)
T COG2812 204 SLIARA---AEGSLRDALSLLDQAIAF 227 (515)
T ss_pred HHHHHH---cCCChhhHHHHHHHHHHc
Confidence 999996 477789999999887754
No 127
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.49 E-value=3.7e-13 Score=145.28 Aligned_cols=229 Identities=22% Similarity=0.329 Sum_probs=136.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.|+||+++|+.|..++... ..+++||.|+||||||++|+++|+.+.
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~--------------------------------~~~~vLl~G~pG~gKT~lar~la~llP~~ 56 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDP--------------------------------GIGGVLVFGDRGTGKSTAVRALAALLPLI 56 (334)
T ss_pred HhCCHHHHHHHHHHHHhcc--------------------------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCc
Confidence 3799999999888655310 016899999999999999999999993
Q ss_pred -----CC--EEEEecc-cc----------------------cccccccch-hHHHH-HHHHhcccchHhhhcCcEEEEec
Q 005670 356 -----VP--FVIADAT-TL----------------------TQARYVGED-VESIL-YKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 356 -----~p--fv~i~~s-~l----------------------~~s~yvG~~-~~~~l-~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.+ +..+.+. ++ ++...+|.- ....+ ..-+.-.++.+..+++|+|||||
T Consensus 57 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDE 136 (334)
T PRK13407 57 KAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDE 136 (334)
T ss_pred chhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecC
Confidence 22 1111110 00 112244421 11110 01111234555667889999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccC
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
|+.+.++ +|+.|++.|+...+.+...|. ... ....+++|++.|..+
T Consensus 137 Inrl~~~--------------~q~~Lle~mee~~v~v~r~G~-------~~~-~p~rfiviAt~NP~e------------ 182 (334)
T PRK13407 137 VNLLEDH--------------IVDLLLDVAQSGENVVEREGL-------SIR-HPARFVLVGSGNPEE------------ 182 (334)
T ss_pred hHhCCHH--------------HHHHHHHHHHcCCeEEEECCe-------EEe-cCCCEEEEecCCccc------------
Confidence 9999887 999999999854433222221 111 223577777766210
Q ss_pred CCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCH-HHHHHHHhchHH------HH
Q 005670 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN------AL 556 (684)
Q Consensus 484 ~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLse-eel~~Il~~~l~------~L 556 (684)
..+++.+++||...|.+.+... ++..+|+..... .+
T Consensus 183 -------------------------------------~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~ 225 (334)
T PRK13407 183 -------------------------------------GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAF 225 (334)
T ss_pred -------------------------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhh
Confidence 1266889999998888887776 676777765211 01
Q ss_pred HHHH--------HHHHH--hcCccccccHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHhc
Q 005670 557 GKQY--------RKMFQ--MNGVKLHFTENALRLIAKKAISKN-TGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 557 ~kq~--------~~~~~--~~gi~l~~s~eAl~~La~~a~~~~-~GAR~Lr~iIe~~l~~al~e 609 (684)
...| .+... ..--.+.+++++++++++.+..-. -|-|+--.++...-..++.+
T Consensus 226 ~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~ 289 (334)
T PRK13407 226 MAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFE 289 (334)
T ss_pred hccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHc
Confidence 0000 11111 111257789999999988765433 36677666665554444443
No 128
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.48 E-value=4.2e-13 Score=145.05 Aligned_cols=230 Identities=22% Similarity=0.306 Sum_probs=139.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.|+||+++|+.|.-++..+. ..+++|.|+||+|||+++++++..+
T Consensus 5 ~ivgq~~~~~al~~~~~~~~--------------------------------~g~vli~G~~G~gKttl~r~~~~~~~~~ 52 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPK--------------------------------IGGVMVMGDRGTGKSTAVRALAALLPEI 52 (337)
T ss_pred ccccHHHHHHHHHHHhcCCC--------------------------------CCeEEEEcCCCCCHHHHHHHHHHhhccc
Confidence 38999999999876664211 2789999999999999999999988
Q ss_pred ----CCCEE---------EEecc-------------------cc----cccccccchh-HHHH-HHHHhcccchHhhhcC
Q 005670 355 ----NVPFV---------IADAT-------------------TL----TQARYVGEDV-ESIL-YKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 355 ----~~pfv---------~i~~s-------------------~l----~~s~yvG~~~-~~~l-~~l~~~a~~~v~~a~~ 396 (684)
+.++- ..+|. ++ ++..++|.-. ...+ ...+.-.++.+.++.+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~ 132 (337)
T TIGR02030 53 KAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR 132 (337)
T ss_pred ccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC
Confidence 33322 00111 10 1113444321 1111 1111223455667888
Q ss_pred cEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHH
Q 005670 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i 476 (684)
++||||||+.+.+. +|+.|+.+|+...+.+...| .....+ .++++|++.|..
T Consensus 133 GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G-------~~~~~~-~r~iviat~np~------ 184 (337)
T TIGR02030 133 GILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREG-------ISIRHP-ARFVLVGSGNPE------ 184 (337)
T ss_pred CEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECC-------EEEEcC-CCEEEEeccccc------
Confidence 99999999999887 99999999974332221112 112222 356777776511
Q ss_pred HhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCH-HHHHHHHhchHHH
Q 005670 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKNA 555 (684)
Q Consensus 477 ~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLse-eel~~Il~~~l~~ 555 (684)
+..|+++|++||...+.+..++. ++..+|++.....
T Consensus 185 -------------------------------------------eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~ 221 (337)
T TIGR02030 185 -------------------------------------------EGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEY 221 (337)
T ss_pred -------------------------------------------cCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhc
Confidence 11377899999999999988876 7777777652111
Q ss_pred ------HHHHH--------HHHH--HhcCccccccHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHHHhcC
Q 005670 556 ------LGKQY--------RKMF--QMNGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 556 ------L~kq~--------~~~~--~~~gi~l~~s~eAl~~La~~a~~~~~-GAR~Lr~iIe~~l~~al~e~ 610 (684)
..+.+ .+.. +..--.+.+++++++++++.+..-+. |-|....+++..-..++.+.
T Consensus 222 ~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 222 DADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred ccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC
Confidence 00001 0111 11112577899999999886543332 56777777766555555443
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.1e-12 Score=152.79 Aligned_cols=190 Identities=25% Similarity=0.327 Sum_probs=127.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... -++.+||+||+|+|||++|+++|+.+.++
T Consensus 19 dIiGQe~~v~~L~~aI~~~r-------------------------------l~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK-------------------------------ISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 37999999999999885210 02678999999999999999999998653
Q ss_pred EEEE---ecc----------c---ccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCc
Q 005670 358 FVIA---DAT----------T---LTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (684)
Q Consensus 358 fv~i---~~s----------~---l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~ 421 (684)
-... .|. + +..++..|. ..++.+..........+...|++|||+|.|...
T Consensus 68 ~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~v---d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~----------- 133 (725)
T PRK07133 68 HKTDLLEPCQECIENVNNSLDIIEMDAASNNGV---DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS----------- 133 (725)
T ss_pred ccCCCCCchhHHHHhhcCCCcEEEEeccccCCH---HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-----------
Confidence 1100 010 0 000111222 234444443332222356689999999999876
Q ss_pred chHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCc
Q 005670 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (684)
Q Consensus 422 ~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~ 501 (684)
.+++||+.||+ ....++||++++.. +
T Consensus 134 ---A~NALLKtLEE---------------------PP~~tifILaTte~--~---------------------------- 159 (725)
T PRK07133 134 ---AFNALLKTLEE---------------------PPKHVIFILATTEV--H---------------------------- 159 (725)
T ss_pred ---HHHHHHHHhhc---------------------CCCceEEEEEcCCh--h----------------------------
Confidence 89999999983 12246777766411 0
Q ss_pred hhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHH
Q 005670 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLI 581 (684)
Q Consensus 502 ~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~L 581 (684)
.+.|.+++|+. ++.|.+++.+++.+++...+ ... .+.+++++++.|
T Consensus 160 --------------------KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il-----------~ke--gI~id~eAl~~L 205 (725)
T PRK07133 160 --------------------KIPLTILSRVQ-RFNFRRISEDEIVSRLEFIL-----------EKE--NISYEKNALKLI 205 (725)
T ss_pred --------------------hhhHHHHhhce-eEEccCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHH
Confidence 13355677775 89999999999998876521 112 467899999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHH
Q 005670 582 AKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 582 a~~a~~~~~GAR~Lr~iIe~~l 603 (684)
+..+ +++.|.+.++++.+.
T Consensus 206 A~lS---~GslR~AlslLekl~ 224 (725)
T PRK07133 206 AKLS---SGSLRDALSIAEQVS 224 (725)
T ss_pred HHHc---CCCHHHHHHHHHHHH
Confidence 9963 456788888888754
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1e-12 Score=149.21 Aligned_cols=185 Identities=28% Similarity=0.363 Sum_probs=127.7
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (684)
|+||+.+++.|..++.... -++.+||+||+|+|||++|+++|+.+.++
T Consensus 16 iiGqe~v~~~L~~~I~~gr-------------------------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~ 64 (535)
T PRK08451 16 LIGQESVSKTLSLALDNNR-------------------------------LAHAYLFSGLRGSGKTSSARIFARALVCEQ 64 (535)
T ss_pred ccCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCcHHHHHHHHHHHhcCCC
Confidence 7999999999998885110 02567999999999999999999998431
Q ss_pred -----------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccc
Q 005670 358 -----------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 358 -----------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~ 414 (684)
++.++++ ...| -..++++..........+...|++|||+|.+...
T Consensus 65 ~~~~~pC~~C~~C~~~~~~~h~dv~eldaa-----s~~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~---- 132 (535)
T PRK08451 65 GPSSTPCDTCIQCQSALENRHIDIIEMDAA-----SNRG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE---- 132 (535)
T ss_pred CCCCCCCcccHHHHHHhhcCCCeEEEeccc-----cccC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH----
Confidence 2222221 1112 2345555543211111245679999999999876
Q ss_pred cCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccc
Q 005670 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~ 494 (684)
.+++||+.||. ...+++||++++..
T Consensus 133 ----------A~NALLK~LEE---------------------pp~~t~FIL~ttd~------------------------ 157 (535)
T PRK08451 133 ----------AFNALLKTLEE---------------------PPSYVKFILATTDP------------------------ 157 (535)
T ss_pred ----------HHHHHHHHHhh---------------------cCCceEEEEEECCh------------------------
Confidence 89999999982 12346777776511
Q ss_pred cccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc
Q 005670 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s 574 (684)
..+.|.+++|.. ++.|.+++.+++.+.+... +... .+.++
T Consensus 158 --------------------------~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~I-----------l~~E--Gi~i~ 197 (535)
T PRK08451 158 --------------------------LKLPATILSRTQ-HFRFKQIPQNSIISHLKTI-----------LEKE--GVSYE 197 (535)
T ss_pred --------------------------hhCchHHHhhce-eEEcCCCCHHHHHHHHHHH-----------HHHc--CCCCC
Confidence 024466778854 8999999999988877652 2222 46789
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 575 ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++|+..+ +++.|.+.+.++.++.
T Consensus 198 ~~Al~~Ia~~s---~GdlR~alnlLdqai~ 224 (535)
T PRK08451 198 PEALEILARSG---NGSLRDTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHHc---CCcHHHHHHHHHHHHH
Confidence 99999999963 4668998888887664
No 131
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=4.1e-13 Score=148.00 Aligned_cols=118 Identities=23% Similarity=0.325 Sum_probs=74.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+++++.|..++...... .+..... -++.+||+||||+|||++|+++|+.+.+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~----------~~~~~~~------------l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARAD----------VAAAGSG------------MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hccChHHHHHHHHHHHHhcccc----------ccccCCC------------CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4899999999999999632110 0000000 13789999999999999999999988553
Q ss_pred EEE-Eecc--------------cc---c-ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCC
Q 005670 358 FVI-ADAT--------------TL---T-QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 358 fv~-i~~s--------------~l---~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (684)
-.. ..|. ++ . +....+. ..++++++........+...|+||||+|.+...
T Consensus 64 ~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i---~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------- 132 (394)
T PRK07940 64 DPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGV---DEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------- 132 (394)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCH---HHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--------
Confidence 100 0000 00 0 0111222 235555554322222346679999999999876
Q ss_pred CCcchHHHHHHHHHHc
Q 005670 419 DVSGEGVQQALLKMLE 434 (684)
Q Consensus 419 d~~~e~vq~~LL~~LE 434 (684)
.+|.||+.||
T Consensus 133 ------aanaLLk~LE 142 (394)
T PRK07940 133 ------AANALLKAVE 142 (394)
T ss_pred ------HHHHHHHHhh
Confidence 8899999998
No 132
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.48 E-value=1.6e-12 Score=140.11 Aligned_cols=186 Identities=27% Similarity=0.372 Sum_probs=122.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+++++.|..++.... .++.+||+||||+|||++|+++|+.+.++
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-------------------------------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-------------------------------IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999998885210 12678999999999999999999998532
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.++.. ...+ ...++.++.........+...||+|||+|.+...
T Consensus 64 ~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--- 132 (355)
T TIGR02397 64 NGPDGEPCNECESCKEINSGSSLDVIEIDAA-----SNNG---VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--- 132 (355)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCCEEEeecc-----ccCC---HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH---
Confidence 2222221 1111 1223444443222112245679999999999765
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.|++.+|+. ..+++||++++. +++
T Consensus 133 -----------~~~~Ll~~le~~---------------------~~~~~lIl~~~~--~~~------------------- 159 (355)
T TIGR02397 133 -----------AFNALLKTLEEP---------------------PEHVVFILATTE--PHK------------------- 159 (355)
T ss_pred -----------HHHHHHHHHhCC---------------------ccceeEEEEeCC--HHH-------------------
Confidence 789999999830 123666666541 111
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
+.+.+.+|+. .+.|.+++.+++.+++...+ ... .+.+
T Consensus 160 -----------------------------l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~-----------~~~--g~~i 196 (355)
T TIGR02397 160 -----------------------------IPATILSRCQ-RFDFKRIPLEDIVERLKKIL-----------DKE--GIKI 196 (355)
T ss_pred -----------------------------HHHHHHhhee-EEEcCCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 1233555653 78999999999998876532 112 4578
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|++.+ +++.|.+.+.++.+..
T Consensus 197 ~~~a~~~l~~~~---~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 197 EDEALELIARAA---DGSLRDALSLLDQLIS 224 (355)
T ss_pred CHHHHHHHHHHc---CCChHHHHHHHHHHHh
Confidence 999999999963 4467888888877654
No 133
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.1e-12 Score=150.24 Aligned_cols=186 Identities=27% Similarity=0.361 Sum_probs=125.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+++|+.+.+.
T Consensus 17 dIIGQe~iv~~L~~aI~~~r-------------------------------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK-------------------------------LTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999998884110 02679999999999999999999998531
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.++++ ...|.+ .++.+..........+...|++|||+|.|...
T Consensus 66 ~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa-----s~igVd---~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--- 134 (605)
T PRK05896 66 NPKDGDCCNSCSVCESINTNQSVDIVELDAA-----SNNGVD---EIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--- 134 (605)
T ss_pred CCCCCCCCcccHHHHHHHcCCCCceEEeccc-----cccCHH---HHHHHHHHHHhchhhCCcEEEEEechHhCCHH---
Confidence 2222221 122322 24444433222112345689999999999765
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.+++||+.||. ...+++||++++.. .
T Consensus 135 -----------A~NaLLKtLEE---------------------Pp~~tvfIL~Tt~~--~-------------------- 160 (605)
T PRK05896 135 -----------AWNALLKTLEE---------------------PPKHVVFIFATTEF--Q-------------------- 160 (605)
T ss_pred -----------HHHHHHHHHHh---------------------CCCcEEEEEECCCh--H--------------------
Confidence 89999999983 11246777665411 0
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+++|+. ++.|.+++.+++..++...+ ... .+.+
T Consensus 161 ----------------------------KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il-----------~ke--gi~I 198 (605)
T PRK05896 161 ----------------------------KIPLTIISRCQ-RYNFKKLNNSELQELLKSIA-----------KKE--KIKI 198 (605)
T ss_pred ----------------------------hhhHHHHhhhh-hcccCCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 12345667765 79999999999988876522 112 4668
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.++..+ +++.|.+.+.++.+..
T Consensus 199 s~eal~~La~lS---~GdlR~AlnlLekL~~ 226 (605)
T PRK05896 199 EDNAIDKIADLA---DGSLRDGLSILDQLST 226 (605)
T ss_pred CHHHHHHHHHHc---CCcHHHHHHHHHHHHh
Confidence 999999999963 4568888888887543
No 134
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.1e-14 Score=146.65 Aligned_cols=157 Identities=23% Similarity=0.318 Sum_probs=121.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC---------CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCc--E
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVN---------VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQG--I 398 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~---------~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~g--I 398 (684)
.+-+||+||||||||+|++++|+.+. ..++++++..+. ++|++++ ++.+.++|+.....++. .++ .
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~d-~~~lVf 253 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVED-RGNLVF 253 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHhC-CCcEEE
Confidence 36899999999999999999999983 358999999998 8999998 89999999876554433 333 4
Q ss_pred EEEecccccccccccccCCCCCc-chHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHH
Q 005670 399 VYIDEVDKITKKAESLNISRDVS-GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (684)
Q Consensus 399 LfIDEIDkl~~~r~~~~~~~d~~-~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~ 477 (684)
++|||++.+...|.+...+.+.+ .-++.|+||..||. .-...|+++++|+|.. +
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr-------------------lK~~~NvliL~TSNl~---~--- 308 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR-------------------LKRYPNVLILATSNLT---D--- 308 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-------------------hccCCCEEEEeccchH---H---
Confidence 67999999998886555444433 34699999999991 1123478888888721 1
Q ss_pred hccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHH
Q 005670 478 ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALG 557 (684)
Q Consensus 478 ~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~ 557 (684)
.+.-+|.+|-|++..+.+++.+.+.+|++..+.++.
T Consensus 309 --------------------------------------------siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 309 --------------------------------------------SIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred --------------------------------------------HHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 123568999999999999999999999988766664
Q ss_pred H
Q 005670 558 K 558 (684)
Q Consensus 558 k 558 (684)
.
T Consensus 345 ~ 345 (423)
T KOG0744|consen 345 S 345 (423)
T ss_pred h
Confidence 3
No 135
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.47 E-value=7.5e-13 Score=154.21 Aligned_cols=226 Identities=22% Similarity=0.292 Sum_probs=141.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.|+||+.+|+.|..++.++. ..+|||.|++|||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~~~--------------------------------~g~vli~G~~GtgKs~lar~l~~~lp~~ 52 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDPR--------------------------------IGGVLIRGEKGTAKSTAARGLAALLPPI 52 (633)
T ss_pred hhcChHHHHHHHHHHhhCCC--------------------------------CCeEEEEcCCCCcHHHHHHHHHHhCCCc
Confidence 48999999998887764220 1589999999999999999999998
Q ss_pred --------------------------------CCCEEEEecccccccccccch-hHHHHH-HHHhcccchHhhhcCcEEE
Q 005670 355 --------------------------------NVPFVIADATTLTQARYVGED-VESILY-KLLTVSDYNVAAAQQGIVY 400 (684)
Q Consensus 355 --------------------------------~~pfv~i~~s~l~~s~yvG~~-~~~~l~-~l~~~a~~~v~~a~~gILf 400 (684)
..||+.+.++... ..++|.. ....+. .-....++.+..+.+||||
T Consensus 53 ~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~ 131 (633)
T TIGR02442 53 DVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSLDIERALREGEKAFQPGLLAEAHRGILY 131 (633)
T ss_pred eeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcccHHHHhhcCCeeecCcceeecCCCeEE
Confidence 2467766554332 3455532 111111 0111234556678889999
Q ss_pred EecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcc
Q 005670 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 401 IDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~ 480 (684)
||||+++.+. +|+.|+..|+...+.+...| .... -..++++|+|.|..+
T Consensus 132 lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g-------~~~~-~~~~~~lIat~np~e--------- 180 (633)
T TIGR02442 132 IDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREG-------LSVS-HPARFVLIGTMNPEE--------- 180 (633)
T ss_pred eChhhhCCHH--------------HHHHHHHHHhcCCEEEEECC-------ceee-ecCCeEEEEecCCCC---------
Confidence 9999999987 99999999984333221112 1112 225678888776210
Q ss_pred ccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCH-HHHHHHHhchHH-----
Q 005670 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN----- 554 (684)
Q Consensus 481 ~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLse-eel~~Il~~~l~----- 554 (684)
..|+++|++||+..|.+.++.. ++..+++.....
T Consensus 181 ----------------------------------------g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~ 220 (633)
T TIGR02442 181 ----------------------------------------GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADP 220 (633)
T ss_pred ----------------------------------------CCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCc
Confidence 1266889999998888887763 555666654211
Q ss_pred -HHHHHHH--------HHH--HhcCccccccHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHHH
Q 005670 555 -ALGKQYR--------KMF--QMNGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENILMDAM 607 (684)
Q Consensus 555 -~L~kq~~--------~~~--~~~gi~l~~s~eAl~~La~~a~~~~~-GAR~Lr~iIe~~l~~al 607 (684)
.+..+|. ... ...--.+.++++++++|+.....-+. |.|....+++-+-..+.
T Consensus 221 ~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~Aa 285 (633)
T TIGR02442 221 EAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAA 285 (633)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 0111110 001 11112467899999999998665555 56777666665444333
No 136
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.5e-12 Score=146.09 Aligned_cols=186 Identities=23% Similarity=0.293 Sum_probs=124.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... -++.+||+||||+|||++|+++|+.+.+.
T Consensus 18 diiGq~~~v~~L~~~i~~~~-------------------------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNR-------------------------------AAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999988885110 12679999999999999999999998542
Q ss_pred -------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccc
Q 005670 358 -------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 358 -------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~ 412 (684)
++.+++ ....|.+ .++.+.+........+...||+|||+|.+...
T Consensus 67 ~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g-----~~~~gid---~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-- 136 (451)
T PRK06305 67 NPTEDQEPCNQCASCKEISSGTSLDVLEIDG-----ASHRGIE---DIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-- 136 (451)
T ss_pred CcccCCCCCcccHHHHHHhcCCCCceEEeec-----cccCCHH---HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH--
Confidence 122221 1222322 23332222222112356789999999999876
Q ss_pred cccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccc
Q 005670 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~ 492 (684)
.++.|++.||. ...+++||++++.. .
T Consensus 137 ------------~~n~LLk~lEe---------------------p~~~~~~Il~t~~~--~------------------- 162 (451)
T PRK06305 137 ------------AFNSLLKTLEE---------------------PPQHVKFFLATTEI--H------------------- 162 (451)
T ss_pred ------------HHHHHHHHhhc---------------------CCCCceEEEEeCCh--H-------------------
Confidence 89999999982 01235666665411 0
Q ss_pred cccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccc
Q 005670 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~ 572 (684)
.+.+.+.+|+. ++.|.+++++++.+++...+ +.. .+.
T Consensus 163 -----------------------------kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~-----------~~e--g~~ 199 (451)
T PRK06305 163 -----------------------------KIPGTILSRCQ-KMHLKRIPEETIIDKLALIA-----------KQE--GIE 199 (451)
T ss_pred -----------------------------hcchHHHHhce-EEeCCCCCHHHHHHHHHHHH-----------HHc--CCC
Confidence 13355667775 79999999999988776521 111 566
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 573 FTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 573 ~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+++++++.|+..+ +++.|.+.+.++.++.
T Consensus 200 i~~~al~~L~~~s---~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 200 TSREALLPIARAA---QGSLRDAESLYDYVVG 228 (451)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 8999999999973 4567888888887553
No 137
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.4e-12 Score=150.30 Aligned_cols=191 Identities=26% Similarity=0.304 Sum_probs=128.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+++|+.+++.
T Consensus 25 dliGq~~~v~~L~~~~~~gr-------------------------------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-------------------------------IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 37999999999998885210 13689999999999999999999999753
Q ss_pred EEEEe-------------cc-----------cccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 FVIAD-------------AT-----------TLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 fv~i~-------------~s-----------~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
....+ |. ++..+...|.+ .+++++.........+...||+|||+|.+...
T Consensus 74 ~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd---~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~--- 147 (598)
T PRK09111 74 GPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVD---DIREIIESVRYRPVSARYKVYIIDEVHMLSTA--- 147 (598)
T ss_pred CccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHH---HHHHHHHHHHhchhcCCcEEEEEEChHhCCHH---
Confidence 21111 10 11112223322 34555444332222356789999999999876
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.||+.||. ....++||++++.. ++
T Consensus 148 -----------a~naLLKtLEe---------------------Pp~~~~fIl~tte~--~k------------------- 174 (598)
T PRK09111 148 -----------AFNALLKTLEE---------------------PPPHVKFIFATTEI--RK------------------- 174 (598)
T ss_pred -----------HHHHHHHHHHh---------------------CCCCeEEEEEeCCh--hh-------------------
Confidence 89999999983 11236666665411 11
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
+.+.+++|+. ++.|.+++++++...+...+ ... .+.+
T Consensus 175 -----------------------------ll~tI~SRcq-~~~f~~l~~~el~~~L~~i~-----------~ke--gi~i 211 (598)
T PRK09111 175 -----------------------------VPVTVLSRCQ-RFDLRRIEADVLAAHLSRIA-----------AKE--GVEV 211 (598)
T ss_pred -----------------------------hhHHHHhhee-EEEecCCCHHHHHHHHHHHH-----------HHc--CCCC
Confidence 1233556664 79999999999988876532 112 5678
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|+..+ +++.|.+.+.++.++.
T Consensus 212 ~~eAl~lIa~~a---~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 212 EDEALALIARAA---EGSVRDGLSLLDQAIA 239 (598)
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 999999999963 4568999998887653
No 138
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.6e-12 Score=150.25 Aligned_cols=191 Identities=20% Similarity=0.267 Sum_probs=123.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.+... ++.+||+||+|||||++|+.+|+.+++.
T Consensus 17 eivGQe~i~~~L~~~i~~~ri-------------------------------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDRV-------------------------------GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 379999999999888752111 2679999999999999999999999762
Q ss_pred EEE----------Eecc-----------------cccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 358 FVI----------ADAT-----------------TLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 358 fv~----------i~~s-----------------~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
-.. -.|. .+......| ...++.+.+.....-..+...|++|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~---vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~ 142 (620)
T PRK14954 66 RMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNS---VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA 142 (620)
T ss_pred CcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCC---HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH
Confidence 100 0010 011011112 1234444433311112346689999999999765
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~ 490 (684)
.++.||+.||. ....++||++++. ..
T Consensus 143 --------------a~naLLK~LEe---------------------Pp~~tv~IL~t~~--~~----------------- 168 (620)
T PRK14954 143 --------------AFNAFLKTLEE---------------------PPPHAIFIFATTE--LH----------------- 168 (620)
T ss_pred --------------HHHHHHHHHhC---------------------CCCCeEEEEEeCC--hh-----------------
Confidence 79999999983 0123566665441 11
Q ss_pred cccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcc
Q 005670 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~ 570 (684)
.+.+.+.+|.. ++.|.+++.+++...+...+ ... .
T Consensus 169 -------------------------------kLl~TI~SRc~-~vef~~l~~~ei~~~L~~i~-----------~~e--g 203 (620)
T PRK14954 169 -------------------------------KIPATIASRCQ-RFNFKRIPLDEIQSQLQMIC-----------RAE--G 203 (620)
T ss_pred -------------------------------hhhHHHHhhce-EEecCCCCHHHHHHHHHHHH-----------HHc--C
Confidence 12234455554 89999999999888765421 112 4
Q ss_pred ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+.++++++++|+..+ +++.|.+.+.++.++.
T Consensus 204 i~I~~eal~~La~~s---~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 204 IQIDADALQLIARKA---QGSMRDAQSILDQVIA 234 (620)
T ss_pred CCCCHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 668999999999973 4568888888887654
No 139
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.46 E-value=2.1e-12 Score=137.44 Aligned_cols=191 Identities=18% Similarity=0.255 Sum_probs=124.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
|+||+++++.+...+... ..++.+||+||||+|||++|+++++.++.++
T Consensus 23 ~~~~~~~~~~l~~~~~~~-------------------------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 23 CILPAADKETFKSIVKKG-------------------------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred hcCcHHHHHHHHHHHhcC-------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 699999999998887411 0125666699999999999999999998899
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCcee
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
+.+++++ . . +.. ....+.......+. .....||+|||+|.+... ..++.|..+++..
T Consensus 72 ~~i~~~~-~--~-~~~-i~~~l~~~~~~~~~---~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le~~-- 128 (316)
T PHA02544 72 LFVNGSD-C--R-IDF-VRNRLTRFASTVSL---TGGGKVIIIDEFDRLGLA-------------DAQRHLRSFMEAY-- 128 (316)
T ss_pred eEeccCc-c--c-HHH-HHHHHHHHHHhhcc---cCCCeEEEEECcccccCH-------------HHHHHHHHHHHhc--
Confidence 9998876 2 1 110 11112222111110 135689999999998332 1677788888720
Q ss_pred eccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhh
Q 005670 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dl 518 (684)
..++.||+++|...
T Consensus 129 -------------------~~~~~~Ilt~n~~~----------------------------------------------- 142 (316)
T PHA02544 129 -------------------SKNCSFIITANNKN----------------------------------------------- 142 (316)
T ss_pred -------------------CCCceEEEEcCChh-----------------------------------------------
Confidence 12456777776210
Q ss_pred hhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHH
Q 005670 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 l~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~i 598 (684)
.+.|.+++|+. ++.|+.++.++..+++.... +++...+... .+.++++++..+++.++ .+.|.+-+.
T Consensus 143 ---~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~----~~~~~~~~~~--~~~i~~~al~~l~~~~~---~d~r~~l~~ 209 (316)
T PHA02544 143 ---GIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMI----VRCKGILEAE--GVEVDMKVLAALVKKNF---PDFRRTINE 209 (316)
T ss_pred ---hchHHHHhhce-EEEeCCCCHHHHHHHHHHHH----HHHHHHHHhc--CCCCCHHHHHHHHHhcC---CCHHHHHHH
Confidence 23466778886 78899999999888877633 3333333333 45679999999999633 345766666
Q ss_pred HHHH
Q 005670 599 LENI 602 (684)
Q Consensus 599 Ie~~ 602 (684)
++..
T Consensus 210 l~~~ 213 (316)
T PHA02544 210 LQRY 213 (316)
T ss_pred HHHH
Confidence 6643
No 140
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.2e-12 Score=142.71 Aligned_cols=190 Identities=25% Similarity=0.325 Sum_probs=124.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
|+||+.+++.+...+.+.. .++++||+||||+|||++|+++|+.+..+.
T Consensus 19 iig~~~~~~~l~~~i~~~~-------------------------------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~ 67 (367)
T PRK14970 19 VVGQSHITNTLLNAIENNH-------------------------------LAQALLFCGPRGVGKTTCARILARKINQPG 67 (367)
T ss_pred cCCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 6999999999998885210 126899999999999999999999986522
Q ss_pred EEEe-------cccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHH
Q 005670 359 VIAD-------ATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 359 v~i~-------~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.... ..++......+ ...++.++..+...-..+...||+|||+|.+... .++.|++
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~---~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll~ 130 (367)
T PRK14970 68 YDDPNEDFSFNIFELDAASNNS---VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFLK 130 (367)
T ss_pred CCCCCCCCCcceEEeccccCCC---HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHHH
Confidence 1110 00111111111 1334444443211111235679999999998765 7889999
Q ss_pred HHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHh
Q 005670 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~ 511 (684)
.+++ ....++||++++..
T Consensus 131 ~le~---------------------~~~~~~~Il~~~~~----------------------------------------- 148 (367)
T PRK14970 131 TLEE---------------------PPAHAIFILATTEK----------------------------------------- 148 (367)
T ss_pred HHhC---------------------CCCceEEEEEeCCc-----------------------------------------
Confidence 9982 11235666655411
Q ss_pred hccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCC
Q 005670 512 TVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG 591 (684)
Q Consensus 512 ~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~G 591 (684)
..+.|.+.+|+. ++.|.+++++++..++...+. .. .+.+++++++.|+.. .+++
T Consensus 149 ---------~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~-----------~~--g~~i~~~al~~l~~~---~~gd 202 (367)
T PRK14970 149 ---------HKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAV-----------KE--GIKFEDDALHIIAQK---ADGA 202 (367)
T ss_pred ---------ccCCHHHHhcce-eEecCCccHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHh---CCCC
Confidence 013355666765 689999999999888765221 12 567899999999996 3457
Q ss_pred HHHHHHHHHHHHH
Q 005670 592 ARGLRSLLENILM 604 (684)
Q Consensus 592 AR~Lr~iIe~~l~ 604 (684)
.|.+.+.+++++.
T Consensus 203 lr~~~~~lekl~~ 215 (367)
T PRK14970 203 LRDALSIFDRVVT 215 (367)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988764
No 141
>PRK04195 replication factor C large subunit; Provisional
Probab=99.45 E-value=2.4e-12 Score=145.65 Aligned_cols=187 Identities=22% Similarity=0.292 Sum_probs=121.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
|+|++++++.|...+..... + .++.++||+||||||||++|+++|+.++.++
T Consensus 16 lvg~~~~~~~l~~~l~~~~~----g------------------------~~~~~lLL~GppG~GKTtla~ala~el~~~~ 67 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLK----G------------------------KPKKALLLYGPPGVGKTSLAHALANDYGWEV 67 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhc----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 79999999999998852211 0 0137999999999999999999999999999
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccc--hHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDY--NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~--~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+.+++++... ...+...+..... .+......||+|||+|.+.... ..+.++.|+++++.
T Consensus 68 ielnasd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~- 128 (482)
T PRK04195 68 IELNASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK- 128 (482)
T ss_pred EEEccccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc-
Confidence 9999877541 1122222222111 0111246799999999987521 11267888888871
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
.+..+|+++|...
T Consensus 129 ----------------------~~~~iIli~n~~~--------------------------------------------- 141 (482)
T PRK04195 129 ----------------------AKQPIILTANDPY--------------------------------------------- 141 (482)
T ss_pred ----------------------CCCCEEEeccCcc---------------------------------------------
Confidence 0123445555110
Q ss_pred hhhhhcCcc-ccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHH
Q 005670 517 DLIAYGLIP-EFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 517 dll~~~f~P-eLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~L 595 (684)
...+ ++.+|. ..|.|.+++.+++..++...+. .. .+.+++++++.|++.+ +++.|.+
T Consensus 142 -----~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~-----------~e--gi~i~~eaL~~Ia~~s---~GDlR~a 199 (482)
T PRK04195 142 -----DPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICR-----------KE--GIECDDEALKEIAERS---GGDLRSA 199 (482)
T ss_pred -----ccchhhHhccc-eEEEecCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHc---CCCHHHH
Confidence 0112 344444 3799999999999888875321 12 4668999999999963 3445655
Q ss_pred HHHHHH
Q 005670 596 RSLLEN 601 (684)
Q Consensus 596 r~iIe~ 601 (684)
-+.++.
T Consensus 200 in~Lq~ 205 (482)
T PRK04195 200 INDLQA 205 (482)
T ss_pred HHHHHH
Confidence 555544
No 142
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.6e-12 Score=149.00 Aligned_cols=189 Identities=24% Similarity=0.351 Sum_probs=125.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+++++.|..++.... -.+++||+||+|+|||++|+++|+.+++.
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-------------------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-------------------------------IAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 37999999999998885210 02689999999999999999999999752
Q ss_pred EEE----Eecc--------------c---ccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccC
Q 005670 358 FVI----ADAT--------------T---LTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 358 fv~----i~~s--------------~---l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~ 416 (684)
... -.|. + +....-.| -..+++++..+...-..+...||+|||+|.|...
T Consensus 66 ~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~---vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~------ 136 (620)
T PRK14948 66 NSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTG---VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA------ 136 (620)
T ss_pred CcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCC---HHHHHHHHHHHhhChhcCCceEEEEECccccCHH------
Confidence 110 0010 0 00001112 2355666654432222345679999999999776
Q ss_pred CCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccc
Q 005670 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~ 496 (684)
.++.||+.||+ ...+++||++++.. +
T Consensus 137 --------a~naLLK~LEe---------------------Pp~~tvfIL~t~~~--~----------------------- 162 (620)
T PRK14948 137 --------AFNALLKTLEE---------------------PPPRVVFVLATTDP--Q----------------------- 162 (620)
T ss_pred --------HHHHHHHHHhc---------------------CCcCeEEEEEeCCh--h-----------------------
Confidence 89999999993 11246777766511 0
Q ss_pred cCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH
Q 005670 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 497 ~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e 576 (684)
.+.|.+++|+. ++.|.+++.+++...+... .+ .. .+.++++
T Consensus 163 -------------------------~llpTIrSRc~-~~~f~~l~~~ei~~~L~~i----a~-------ke--gi~is~~ 203 (620)
T PRK14948 163 -------------------------RVLPTIISRCQ-RFDFRRIPLEAMVQHLSEI----AE-------KE--SIEIEPE 203 (620)
T ss_pred -------------------------hhhHHHHhhee-EEEecCCCHHHHHHHHHHH----HH-------Hh--CCCCCHH
Confidence 12355667764 7889999998888766542 11 11 4668999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHH
Q 005670 577 ALRLIAKKAISKNTGARGLRSLLENI 602 (684)
Q Consensus 577 Al~~La~~a~~~~~GAR~Lr~iIe~~ 602 (684)
++..|++.+ +++.|.+.+.++.+
T Consensus 204 al~~La~~s---~G~lr~A~~lLekl 226 (620)
T PRK14948 204 ALTLVAQRS---QGGLRDAESLLDQL 226 (620)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 999999963 45678888888865
No 143
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8.6e-13 Score=149.12 Aligned_cols=218 Identities=23% Similarity=0.265 Sum_probs=154.7
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
..+.|.......+.+.+..+......... --..+|.++|++||||||||.+++++|++.++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s-------------------~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a 244 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKS-------------------IGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA 244 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhh-------------------cCCCCCCCccccCCCCCChHHHHHHHHHHhCc
Confidence 34678888888888888644332111100 00123589999999999999999999999999
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhc-CcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQ-QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~-~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.++.+++.++. .++.|+. ++.+++.|+.+... + +.+|||||+|.+++++..... -..++..+|+.+|+|
T Consensus 245 ~~~~i~~peli-~k~~gEt-e~~LR~~f~~a~k~----~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg 314 (693)
T KOG0730|consen 245 FLFLINGPELI-SKFPGET-ESNLRKAFAEALKF----QVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDG 314 (693)
T ss_pred eeEecccHHHH-Hhcccch-HHHHHHHHHHHhcc----CCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhh
Confidence 99999999998 7888988 88999999887643 4 899999999999998654322 133488899999995
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
-. ...++++|.++|..+
T Consensus 315 ~~-------------------~~~~vivl~atnrp~-------------------------------------------- 331 (693)
T KOG0730|consen 315 LK-------------------PDAKVIVLAATNRPD-------------------------------------------- 331 (693)
T ss_pred Cc-------------------CcCcEEEEEecCCcc--------------------------------------------
Confidence 11 123577787777432
Q ss_pred hhhhhhcCccccc-cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHH
Q 005670 516 SDLIAYGLIPEFV-GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 516 ~dll~~~f~PeLl-~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~ 594 (684)
.+.|.++ +|||.-+.+.-++..+..+|++.....+ .+. ++..+..++.. ..++-+..
T Consensus 332 ------sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~-------------~~~-~~~~l~~iA~~--thGyvGaD 389 (693)
T KOG0730|consen 332 ------SLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM-------------NLL-SDVDLEDIAVS--THGYVGAD 389 (693)
T ss_pred ------ccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc-------------CCc-chhhHHHHHHH--ccchhHHH
Confidence 2446666 6999999999999999888887632221 232 56777777775 33333456
Q ss_pred HHHHHHHHHHHHHh
Q 005670 595 LRSLLENILMDAMY 608 (684)
Q Consensus 595 Lr~iIe~~l~~al~ 608 (684)
|..++......+..
T Consensus 390 L~~l~~ea~~~~~r 403 (693)
T KOG0730|consen 390 LAALCREASLQATR 403 (693)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666655544443
No 144
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.7e-12 Score=145.10 Aligned_cols=191 Identities=27% Similarity=0.339 Sum_probs=123.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+.+|+.+++.
T Consensus 17 diiGq~~i~~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-------------------------------VSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 37999999999998885210 02568899999999999999999998641
Q ss_pred -------EE-EEeccccc-----------ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCC
Q 005670 358 -------FV-IADATTLT-----------QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 358 -------fv-~i~~s~l~-----------~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (684)
.- ..+|..+. .+.-.|.+.-+.+.+.....+. .+...|++|||+|.+...
T Consensus 66 ~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~---~~~~KVvIIDEad~Lt~~-------- 134 (486)
T PRK14953 66 NPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPI---KGKYKVYIIDEAHMLTKE-------- 134 (486)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcc---cCCeeEEEEEChhhcCHH--------
Confidence 00 01111110 0111232222233333333322 346689999999999765
Q ss_pred CCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccC
Q 005670 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~ 498 (684)
.++.|++.|+.- ...++||++++. +++
T Consensus 135 ------a~naLLk~LEep---------------------p~~~v~Il~tt~--~~k------------------------ 161 (486)
T PRK14953 135 ------AFNALLKTLEEP---------------------PPRTIFILCTTE--YDK------------------------ 161 (486)
T ss_pred ------HHHHHHHHHhcC---------------------CCCeEEEEEECC--HHH------------------------
Confidence 789999999820 123556665541 111
Q ss_pred CCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHH
Q 005670 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 499 ~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl 578 (684)
+.+.+.+|+. ++.|.+++.+++..++...+ ... .+.++++++
T Consensus 162 ------------------------l~~tI~SRc~-~i~f~~ls~~el~~~L~~i~-----------k~e--gi~id~~al 203 (486)
T PRK14953 162 ------------------------IPPTILSRCQ-RFIFSKPTKEQIKEYLKRIC-----------NEE--KIEYEEKAL 203 (486)
T ss_pred ------------------------HHHHHHHhce-EEEcCCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHH
Confidence 1233555654 78999999999988876522 222 467899999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 579 RLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 579 ~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
+.|+.. .+++.|.+.+.++.++.
T Consensus 204 ~~La~~---s~G~lr~al~~Ldkl~~ 226 (486)
T PRK14953 204 DLLAQA---SEGGMRDAASLLDQAST 226 (486)
T ss_pred HHHHHH---cCCCHHHHHHHHHHHHH
Confidence 999996 34668999999888753
No 145
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=9.8e-13 Score=155.17 Aligned_cols=187 Identities=21% Similarity=0.312 Sum_probs=128.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|.++.++.+.+.+.+. .+.++||+||||||||++|+++|..+
T Consensus 187 ~liGR~~ei~~~i~iL~r~--------------------------------~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc--------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3899999999999888621 12688999999999999999999875
Q ss_pred -------CCCEEEEeccccc-ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 355 -------NVPFVIADATTLT-QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~i~~s~l~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
+..++..+.+.+. ...|.|.. +..++.++... ....++||||||||.+...... ......+.
T Consensus 235 ~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l----~~~~~~ILfIDEIh~L~g~g~~-----~~g~~d~~ 304 (758)
T PRK11034 235 DVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAA-----SGGQVDAA 304 (758)
T ss_pred CCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHH----HhcCCCEEEeccHHHHhccCCC-----CCcHHHHH
Confidence 3345555554443 24566754 56666666542 2346789999999999765221 11123366
Q ss_pred HHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhh
Q 005670 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~ 506 (684)
+.|..+++. ..+.+|.++|..+..+.+
T Consensus 305 nlLkp~L~~-----------------------g~i~vIgATt~~E~~~~~------------------------------ 331 (758)
T PRK11034 305 NLIKPLLSS-----------------------GKIRVIGSTTYQEFSNIF------------------------------ 331 (758)
T ss_pred HHHHHHHhC-----------------------CCeEEEecCChHHHHHHh------------------------------
Confidence 767777761 137788888743322211
Q ss_pred HHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHh
Q 005670 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 507 ~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~ 584 (684)
...|.|.+||. .|.+++++.++..+|++. +..+|.. ...+.++++|++.++..
T Consensus 332 ---------------~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~----~~~~ye~-----~h~v~i~~~al~~a~~l 384 (758)
T PRK11034 332 ---------------EKDRALARRFQ-KIDITEPSIEETVQIING----LKPKYEA-----HHDVRYTAKAVRAAVEL 384 (758)
T ss_pred ---------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHH----HHHHhhh-----ccCCCcCHHHHHHHHHH
Confidence 13477889996 799999999999999986 3444433 23678899999888775
No 146
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.44 E-value=1.9e-12 Score=147.38 Aligned_cols=255 Identities=18% Similarity=0.242 Sum_probs=148.8
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (684)
+.+.+...|+|++.+|+.+.-++.....+.. .++. ......|+||+|+||||||++|+++
T Consensus 197 l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~-------------------~~~~-~~r~~~~vLL~G~pGtGKs~lar~l 256 (509)
T smart00350 197 LSRSLAPSIYGHEDIKKAILLLLFGGVHKNL-------------------PDGM-KIRGDINILLLGDPGTAKSQLLKYV 256 (509)
T ss_pred HHHhhCccccCcHHHHHHHHHHHhCCCcccc-------------------CCCc-cccccceEEEeCCCChhHHHHHHHH
Confidence 5566667799999999888877642111000 0000 0112359999999999999999999
Q ss_pred HHHhCC-CEEEE---ecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 351 ARYVNV-PFVIA---DATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 351 A~~l~~-pfv~i---~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
++.+.. .|+.. ++..+.. ..+. + ....-+....+.+..+.+|+++|||++++.+. .|
T Consensus 257 ~~~~~r~~~~~~~~~~~~~l~~-~~~~-~---~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q 317 (509)
T smart00350 257 EKTAPRAVYTTGKGSSAVGLTA-AVTR-D---PETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DR 317 (509)
T ss_pred HHHcCcceEcCCCCCCcCCccc-cceE-c---cCcceEEecCccEEecCCCEEEEechhhCCHH--------------HH
Confidence 998854 34331 2222321 0000 0 00001111234455678899999999999887 89
Q ss_pred HHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhh
Q 005670 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~ 506 (684)
+.|+++||...+.|...|.. .. -..++.+|+|+|... ++++..
T Consensus 318 ~~L~e~me~~~i~i~k~G~~-------~~-l~~~~~viAa~NP~~-------g~y~~~---------------------- 360 (509)
T smart00350 318 TAIHEAMEQQTISIAKAGIT-------TT-LNARCSVLAAANPIG-------GRYDPK---------------------- 360 (509)
T ss_pred HHHHHHHhcCEEEEEeCCEE-------EE-ecCCcEEEEEeCCCC-------cccCCC----------------------
Confidence 99999999665554322211 11 224578888888431 111110
Q ss_pred HHHHhhccchhhhhhcCccccccccceEEEc-cccCHHHHHHHHhchHH-------------------HHHHHHHHHHHh
Q 005670 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQVLTEPKN-------------------ALGKQYRKMFQM 566 (684)
Q Consensus 507 ~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f-~pLseeel~~Il~~~l~-------------------~L~kq~~~~~~~ 566 (684)
..+.+. ..++|++++|||.++.+ ..++.+.-.+|+++.++ .+.++|....+
T Consensus 361 ~~~~~n--------~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar- 431 (509)
T smart00350 361 LTPEEN--------IDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAR- 431 (509)
T ss_pred cChhhc--------cCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHH-
Confidence 011111 24789999999987444 56666665666655321 12233333221
Q ss_pred cCccccccHHHHHHHHHhcCC-------------CCCCHHHHHHHHHHHHHHHHhcC
Q 005670 567 NGVKLHFTENALRLIAKKAIS-------------KNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 567 ~gi~l~~s~eAl~~La~~a~~-------------~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
..+...+++++.++|.++... .+...|.|..+|+-.-..|..+.
T Consensus 432 ~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~ 488 (509)
T smart00350 432 EKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRL 488 (509)
T ss_pred hcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcC
Confidence 224456899999998775221 23468999999986555554443
No 147
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.44 E-value=2.4e-12 Score=130.98 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=110.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
.+++|+||+|||||+||+++++.+ +.+++.+++.++.. . + .. .....+|+|||+|.+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~---------~-~----~~------~~~~~~liiDdi~~l 102 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL---------A-F----DF------DPEAELYAVDDVERL 102 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH---------H-H----hh------cccCCEEEEeChhhc
Confidence 689999999999999999999986 56788888866541 0 0 00 113479999999998
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
... .+..|+.+++... .....++|++++...
T Consensus 103 ~~~--------------~~~~L~~~~~~~~-------------------~~~~~~vl~~~~~~~---------------- 133 (227)
T PRK08903 103 DDA--------------QQIALFNLFNRVR-------------------AHGQGALLVAGPAAP---------------- 133 (227)
T ss_pred Cch--------------HHHHHHHHHHHHH-------------------HcCCcEEEEeCCCCH----------------
Confidence 654 6777888886210 011234555544110
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccccc--ceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~--d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
....+.+++++|+ ...+.++|+++++...++... ..
T Consensus 134 -------------------------------~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~----~~------- 171 (227)
T PRK08903 134 -------------------------------LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA----AA------- 171 (227)
T ss_pred -------------------------------HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH----HH-------
Confidence 0012446777887 468999999998877766531 11
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
.. .+.++++++++|++. |+.+.|+|+++|+.+-..+
T Consensus 172 ~~--~v~l~~~al~~L~~~---~~gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 172 ER--GLQLADEVPDYLLTH---FRRDMPSLMALLDALDRYS 207 (227)
T ss_pred Hc--CCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHHHH
Confidence 11 578999999999994 7888899999999865434
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.43 E-value=1.3e-12 Score=156.34 Aligned_cols=187 Identities=25% Similarity=0.326 Sum_probs=132.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.|+|+++.++.+.+.+.+. .+.+++|+||||||||++|+.+|..+
T Consensus 180 ~~igr~~ei~~~~~~L~r~--------------------------------~~~n~lL~G~pGvGKTal~~~la~~i~~~ 227 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR--------------------------------TKNNPILIGEPGVGKTAIAEGLAQRIVNR 227 (821)
T ss_pred CCCCcHHHHHHHHHHHccc--------------------------------ccCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3899999999999988521 12789999999999999999999987
Q ss_pred -------CCCEEEEeccccc-ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 355 -------NVPFVIADATTLT-QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~i~~s~l~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
+.+++.+|++.+. .+.|.|+- +..+..+++... ...+.||||||||.+...... .++. .+.
T Consensus 228 ~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~----~~~~~ILfiDEih~l~~~g~~-~g~~-----~~a 296 (821)
T CHL00095 228 DVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQ----ENNNIILVIDEVHTLIGAGAA-EGAI-----DAA 296 (821)
T ss_pred CCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHH----hcCCeEEEEecHHHHhcCCCC-CCcc-----cHH
Confidence 3578999988765 45788865 677888887643 235689999999999865221 1111 277
Q ss_pred HHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhh
Q 005670 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~ 506 (684)
+.|...|.. | .+.+|+++|..+..+.+
T Consensus 297 ~lLkp~l~r---------------g--------~l~~IgaTt~~ey~~~i------------------------------ 323 (821)
T CHL00095 297 NILKPALAR---------------G--------ELQCIGATTLDEYRKHI------------------------------ 323 (821)
T ss_pred HHhHHHHhC---------------C--------CcEEEEeCCHHHHHHHH------------------------------
Confidence 777777761 1 36677777733221111
Q ss_pred HHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhc
Q 005670 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 507 ~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a 585 (684)
+ ..|.|..||. .|.+.+++.++...|++. +..+|.+.. .+.++++++..++..+
T Consensus 324 -------e--------~D~aL~rRf~-~I~v~ep~~~e~~aILr~----l~~~~e~~~-----~v~i~deal~~i~~ls 377 (821)
T CHL00095 324 -------E--------KDPALERRFQ-PVYVGEPSVEETIEILFG----LRSRYEKHH-----NLSISDKALEAAAKLS 377 (821)
T ss_pred -------h--------cCHHHHhcce-EEecCCCCHHHHHHHHHH----HHHHHHHHc-----CCCCCHHHHHHHHHHh
Confidence 1 2367888887 578888999999998876 444444432 4458999999988864
No 149
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.43 E-value=1.1e-12 Score=141.10 Aligned_cols=144 Identities=31% Similarity=0.424 Sum_probs=105.3
Q ss_pred ChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHH
Q 005670 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (684)
Q Consensus 267 ~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~L 346 (684)
....+...+.+.++|+++++..+..++.. ..++||.||||||||++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~----------------------------------~~~vll~G~PG~gKT~l 59 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLA----------------------------------GGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHc----------------------------------CCCEEEECCCCccHHHH
Confidence 34457778888899999999988877741 27999999999999999
Q ss_pred HHHHHHHhCCCEEEEecc-cccccccccchhHHHH---HHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcc
Q 005670 347 AKTLARYVNVPFVIADAT-TLTQARYVGEDVESIL---YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 347 AraLA~~l~~pfv~i~~s-~l~~s~yvG~~~~~~l---~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (684)
|+.+|+.++.+|+++.|+ ++.++..+|....... ...+.-.++.+..+..+|+++|||++..++
T Consensus 60 a~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------ 127 (329)
T COG0714 60 ARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------ 127 (329)
T ss_pred HHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH------------
Confidence 999999999999999999 5556667776532221 111222223232332369999999999987
Q ss_pred hHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEec-cceEEEeccC
Q 005670 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT-KDILFICGGA 468 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~-~niIfI~tgn 468 (684)
+|+.||.+|+++.+.++.... +.. ..+++|+|+|
T Consensus 128 --~q~aLl~~l~e~~vtv~~~~~----------~~~~~~f~viaT~N 162 (329)
T COG0714 128 --VQNALLEALEERQVTVPGLTT----------IRLPPPFIVIATQN 162 (329)
T ss_pred --HHHHHHHHHhCcEEEECCcCC----------cCCCCCCEEEEccC
Confidence 999999999988888755442 111 2366777777
No 150
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.42 E-value=4.4e-12 Score=141.71 Aligned_cols=233 Identities=16% Similarity=0.223 Sum_probs=143.6
Q ss_pred HHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005670 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAr 348 (684)
..+.++|.+.|+|++++++.+..++. ...++||.||||||||++|+
T Consensus 12 ~~l~~~l~~~i~gre~vI~lll~aal----------------------------------ag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 12 SRLSSALEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHc----------------------------------cCCCEEEECCCChhHHHHHH
Confidence 45889999999999999999988874 12799999999999999999
Q ss_pred HHHHHhCC--CEEEEecccccccccccchhHHHH--HHHHh-cccchHhhhcCcEEEEecccccccccccccCCCCCcch
Q 005670 349 TLARYVNV--PFVIADATTLTQARYVGEDVESIL--YKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 349 aLA~~l~~--pfv~i~~s~l~~s~yvG~~~~~~l--~~l~~-~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (684)
++|..+.. +|....+.-.+++..+|...-... ...+. ...+.+..+ .+||+|||.+++++
T Consensus 58 aLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A--~lLfLDEI~rasp~------------- 122 (498)
T PRK13531 58 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEA--EIVFLDEIWKAGPA------------- 122 (498)
T ss_pred HHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccc--cEEeecccccCCHH-------------
Confidence 99998753 566555542233455553200110 01111 111212222 39999999999888
Q ss_pred HHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchh
Q 005670 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~ 503 (684)
+|+.||.+|+++.+.+ .++ .......++++++| +|.+
T Consensus 123 -~QsaLLeam~Er~~t~---------g~~--~~~lp~rfiv~ATN--~LPE----------------------------- 159 (498)
T PRK13531 123 -ILNTLLTAINERRFRN---------GAH--EEKIPMRLLVTASN--ELPE----------------------------- 159 (498)
T ss_pred -HHHHHHHHHHhCeEec---------CCe--EEeCCCcEEEEECC--CCcc-----------------------------
Confidence 9999999998665553 122 23333334444445 1110
Q ss_pred hhhHHHHhhccchhhhhhcCccccccccceEEEccccC-HHHHHHHHhchHHH----------H-HHHHHHHHHhcCccc
Q 005670 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKNA----------L-GKQYRKMFQMNGVKL 571 (684)
Q Consensus 504 ~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLs-eeel~~Il~~~l~~----------L-~kq~~~~~~~~gi~l 571 (684)
...|.+++++||-..+.+++++ .++..+++...... + .+++.. +...--.+
T Consensus 160 ----------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~-lq~~v~~V 222 (498)
T PRK13531 160 ----------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQ-WQKEIGKI 222 (498)
T ss_pred ----------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHH-HHHHhcce
Confidence 0135678999997779999997 45556666531100 0 011111 11112257
Q ss_pred cccHHHHHHHHHhcC----CC---CCCHHHHHHHHHHHHHHHHhcC
Q 005670 572 HFTENALRLIAKKAI----SK---NTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 572 ~~s~eAl~~La~~a~----~~---~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
.+++.+++++.+... .. ...-|....++.-+=..|+.+.
T Consensus 223 ~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~G 268 (498)
T PRK13531 223 TLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSG 268 (498)
T ss_pred eCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCC
Confidence 789999999877642 11 2567877777765555555544
No 151
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=5e-12 Score=146.18 Aligned_cols=191 Identities=23% Similarity=0.302 Sum_probs=122.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++..... ++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 eiiGq~~~~~~L~~~i~~~~i-------------------------------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGRV-------------------------------AHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCCC-------------------------------ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999999888852100 2568999999999999999999998642
Q ss_pred EEEE---e---c---ccc-----------cccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCC
Q 005670 358 FVIA---D---A---TTL-----------TQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 358 fv~i---~---~---s~l-----------~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~ 417 (684)
.-.. . | ..+ ..+...+.+ .++++.......-..+...||+|||+|.|...
T Consensus 66 ~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd---~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~------- 135 (585)
T PRK14950 66 TNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVD---DAREIIERVQFRPALARYKVYIIDEVHMLSTA------- 135 (585)
T ss_pred CCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHH---HHHHHHHHHhhCcccCCeEEEEEeChHhCCHH-------
Confidence 1100 0 0 000 001122222 23333332211111245689999999999765
Q ss_pred CCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccccccc
Q 005670 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~ 497 (684)
.++.||+.||.. ..+++||++++ ++++
T Consensus 136 -------a~naLLk~LEep---------------------p~~tv~Il~t~--~~~k----------------------- 162 (585)
T PRK14950 136 -------AFNALLKTLEEP---------------------PPHAIFILATT--EVHK----------------------- 162 (585)
T ss_pred -------HHHHHHHHHhcC---------------------CCCeEEEEEeC--Chhh-----------------------
Confidence 799999999831 12356666554 1111
Q ss_pred CCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHH
Q 005670 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA 577 (684)
Q Consensus 498 ~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eA 577 (684)
+.+.+.+|.. ++.|.+++.+++..++...+ ... .+.+++++
T Consensus 163 -------------------------ll~tI~SR~~-~i~f~~l~~~el~~~L~~~a-----------~~e--gl~i~~ea 203 (585)
T PRK14950 163 -------------------------VPATILSRCQ-RFDFHRHSVADMAAHLRKIA-----------AAE--GINLEPGA 203 (585)
T ss_pred -------------------------hhHHHHhccc-eeeCCCCCHHHHHHHHHHHH-----------HHc--CCCCCHHH
Confidence 1233455554 68899999999888776421 112 46689999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 578 LRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 578 l~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++.|+..+ +++.|.+.+.|+++..
T Consensus 204 l~~La~~s---~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 204 LEAIARAA---TGSMRDAENLLQQLAT 227 (585)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 99999863 4568999999987643
No 152
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.42 E-value=1.6e-12 Score=155.83 Aligned_cols=187 Identities=22% Similarity=0.294 Sum_probs=126.3
Q ss_pred hhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005670 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.|+ .|+|+++.++.+.+.+.+.. +.+++|+||||||||++|+++|..
T Consensus 176 ~l~-~vigr~~ei~~~i~iL~r~~--------------------------------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 176 KLD-PVIGRDEEIRRTIQVLQRRT--------------------------------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CCC-cCCCCHHHHHHHHHHHhcCC--------------------------------cCceEEECCCCCCHHHHHHHHHHH
Confidence 344 38999999998888885211 268999999999999999999998
Q ss_pred h----------CCCEEEEeccccc-ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcc
Q 005670 354 V----------NVPFVIADATTLT-QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 354 l----------~~pfv~i~~s~l~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (684)
+ +.+++.+++..+. ...|.|.- +..++.++..... ...+.||||||||.+..... ..++.|
T Consensus 223 i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~-~~~~~d--- 294 (857)
T PRK10865 223 IINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGK-ADGAMD--- 294 (857)
T ss_pred hhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCC-Cccchh---
Confidence 8 5678888888765 35577765 6777777764211 12568999999999986522 111222
Q ss_pred hHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCch
Q 005670 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~ 502 (684)
+++.|+..|+ +| .+.+|.+++..+..+.+
T Consensus 295 --~~~~lkp~l~---------------~g--------~l~~IgaTt~~e~r~~~-------------------------- 323 (857)
T PRK10865 295 --AGNMLKPALA---------------RG--------ELHCVGATTLDEYRQYI-------------------------- 323 (857)
T ss_pred --HHHHhcchhh---------------cC--------CCeEEEcCCCHHHHHHh--------------------------
Confidence 7888887776 11 37778887743321111
Q ss_pred hhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHH
Q 005670 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLI 581 (684)
Q Consensus 503 ~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~L 581 (684)
...++|.+||+. |.+..++.++...|++. +.++|.. ...+.++++++...
T Consensus 324 -------------------~~d~al~rRf~~-i~v~eP~~~~~~~iL~~----l~~~~e~-----~~~v~~~d~a~~~a 373 (857)
T PRK10865 324 -------------------EKDAALERRFQK-VFVAEPSVEDTIAILRG----LKERYEL-----HHHVQITDPAIVAA 373 (857)
T ss_pred -------------------hhcHHHHhhCCE-EEeCCCCHHHHHHHHHH----Hhhhhcc-----CCCCCcCHHHHHHH
Confidence 135788999984 55666688998888864 3333322 22455566665554
No 153
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.7e-13 Score=145.32 Aligned_cols=185 Identities=21% Similarity=0.300 Sum_probs=114.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
+|+||+.||+.+..+.. | -+|+||+||||||||++|+.+...+--
T Consensus 180 DV~GQ~~AKrAleiAAA----------------G------------------gHnLl~~GpPGtGKTmla~Rl~~lLPpl 225 (490)
T COG0606 180 DVKGQEQAKRALEIAAA----------------G------------------GHNLLLVGPPGTGKTMLASRLPGLLPPL 225 (490)
T ss_pred hhcCcHHHHHHHHHHHh----------------c------------------CCcEEEecCCCCchHHhhhhhcccCCCC
Confidence 48999999999998874 0 289999999999999999998877620
Q ss_pred ---CEEE------Eecc--c---cc-cccc--ccch--hHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCC
Q 005670 357 ---PFVI------ADAT--T---LT-QARY--VGED--VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 357 ---pfv~------i~~s--~---l~-~s~y--vG~~--~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~ 417 (684)
..++ ++.. . +. ..-| .+++ ..+++..--...++.+..+++|||||||+-.....
T Consensus 226 s~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~------- 298 (490)
T COG0606 226 SIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS------- 298 (490)
T ss_pred ChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH-------
Confidence 0100 1100 0 00 0000 0010 01111111122456678899999999999998765
Q ss_pred CCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccccccc
Q 005670 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~ 497 (684)
+++.|.+-||...+.| .+.........++++|++.| .+.+|+.......+
T Consensus 299 -------iLe~LR~PLE~g~i~I--------sRa~~~v~ypa~Fqlv~AmN-------------pcpcG~~~~~~~~C-- 348 (490)
T COG0606 299 -------ILEALREPLENGKIII--------SRAGSKVTYPARFQLVAAMN-------------PCPCGNLGAPLRRC-- 348 (490)
T ss_pred -------HHHHHhCccccCcEEE--------EEcCCeeEEeeeeEEhhhcC-------------CCCccCCCCCCCCc--
Confidence 9999999999544443 12222244556788888887 35566544332221
Q ss_pred CCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHH
Q 005670 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQL 545 (684)
Q Consensus 498 ~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel 545 (684)
.+.+.....++++ +.-+|++|||..+..+.++..++
T Consensus 349 --~c~~~~~~~Y~~k----------lSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 349 --PCSPRQIKRYLNK----------LSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred --CCCHHHHHHHHHH----------hhHHHHhhhhheecccCCCHHHh
Confidence 1233444445554 45789999999999999885444
No 154
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.7e-12 Score=146.76 Aligned_cols=186 Identities=24% Similarity=0.304 Sum_probs=127.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.|..++.... -++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-------------------------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-------------------------------LAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47999999999999885211 02669999999999999999999998642
Q ss_pred -------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccc
Q 005670 358 -------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 358 -------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~ 412 (684)
++.+++. +..+ ...++.++..+......+...|++|||+|.+...
T Consensus 67 ~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~-----~~~~---vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-- 136 (614)
T PRK14971 67 NLTADGEACNECESCVAFNEQRSYNIHELDAA-----SNNS---VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-- 136 (614)
T ss_pred CCCCCCCCCCcchHHHHHhcCCCCceEEeccc-----ccCC---HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--
Confidence 2222221 1111 2334455433221112245679999999999776
Q ss_pred cccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccc
Q 005670 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~ 492 (684)
.++.|++.||. ...+++||++++..
T Consensus 137 ------------a~naLLK~LEe---------------------pp~~tifIL~tt~~---------------------- 161 (614)
T PRK14971 137 ------------AFNAFLKTLEE---------------------PPSYAIFILATTEK---------------------- 161 (614)
T ss_pred ------------HHHHHHHHHhC---------------------CCCCeEEEEEeCCc----------------------
Confidence 89999999992 11246777765511
Q ss_pred cccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccc
Q 005670 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLH 572 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~ 572 (684)
..+.|.+++|.. ++.|.+++.+++...+...+ ..+ .+.
T Consensus 162 ----------------------------~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~ia-----------~~e--gi~ 199 (614)
T PRK14971 162 ----------------------------HKILPTILSRCQ-IFDFNRIQVADIVNHLQYVA-----------SKE--GIT 199 (614)
T ss_pred ----------------------------hhchHHHHhhhh-eeecCCCCHHHHHHHHHHHH-----------HHc--CCC
Confidence 023455667765 79999999999988776521 112 467
Q ss_pred ccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 573 FTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 573 ~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++++|+..+ +++.|.+.+.++.++.
T Consensus 200 i~~~al~~La~~s---~gdlr~al~~Lekl~~ 228 (614)
T PRK14971 200 AEPEALNVIAQKA---DGGMRDALSIFDQVVS 228 (614)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 8999999999973 5668888888887653
No 155
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.40 E-value=7.3e-12 Score=132.62 Aligned_cols=185 Identities=23% Similarity=0.329 Sum_probs=119.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (684)
++|++++++.|..++... ...+++|+||||||||++|+++++.+..
T Consensus 19 ~~g~~~~~~~l~~~i~~~--------------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~ 66 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEK--------------------------------NMPHLLFAGPPGTGKTTAALALARELYGED 66 (319)
T ss_pred hcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 689999999999887411 0147899999999999999999998732
Q ss_pred ---CEEEEecccccccccccch-hHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHH
Q 005670 357 ---PFVIADATTLTQARYVGED-VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ---pfv~i~~s~l~~s~yvG~~-~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
.++.+++++.. +.. ....+.......+. ..+...+|+|||+|.+... .++.|++.
T Consensus 67 ~~~~~i~~~~~~~~-----~~~~~~~~i~~~~~~~~~--~~~~~~vviiDe~~~l~~~--------------~~~~L~~~ 125 (319)
T PRK00440 67 WRENFLELNASDER-----GIDVIRNKIKEFARTAPV--GGAPFKIIFLDEADNLTSD--------------AQQALRRT 125 (319)
T ss_pred cccceEEecccccc-----chHHHHHHHHHHHhcCCC--CCCCceEEEEeCcccCCHH--------------HHHHHHHH
Confidence 34555444321 111 11222222222111 1134579999999999765 67889999
Q ss_pred HcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhh
Q 005670 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~ 512 (684)
++.. ..++.+|++++...
T Consensus 126 le~~---------------------~~~~~lIl~~~~~~----------------------------------------- 143 (319)
T PRK00440 126 MEMY---------------------SQNTRFILSCNYSS----------------------------------------- 143 (319)
T ss_pred HhcC---------------------CCCCeEEEEeCCcc-----------------------------------------
Confidence 8720 11244555554110
Q ss_pred ccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCH
Q 005670 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GA 592 (684)
.+.+++.+|+. ++.|.+++.+++..+++..+. .. .+.++++++++|++.+ +++.
T Consensus 144 ---------~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~-----------~~--~~~i~~~al~~l~~~~---~gd~ 197 (319)
T PRK00440 144 ---------KIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAE-----------NE--GIEITDDALEAIYYVS---EGDM 197 (319)
T ss_pred ---------ccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHc---CCCH
Confidence 12234556665 689999999999888765322 12 4568999999999963 4567
Q ss_pred HHHHHHHHHHHH
Q 005670 593 RGLRSLLENILM 604 (684)
Q Consensus 593 R~Lr~iIe~~l~ 604 (684)
|.+.+.++.+..
T Consensus 198 r~~~~~l~~~~~ 209 (319)
T PRK00440 198 RKAINALQAAAA 209 (319)
T ss_pred HHHHHHHHHHHH
Confidence 888888876543
No 156
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.39 E-value=3e-12 Score=137.17 Aligned_cols=159 Identities=15% Similarity=0.224 Sum_probs=108.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc-ccccccchhH-----HHHHHHHhcccchHhhhcCcEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-QARYVGEDVE-----SILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~-~s~yvG~~~~-----~~l~~l~~~a~~~v~~a~~gILfIDEI 404 (684)
.++||.||||||||++|+.+|+.++.++++++++... ...++|...- .... .|...+-..+...+++|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~-~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQIT-EFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCccee-EEecCcchhHHhCCeEEEechh
Confidence 6899999999999999999999999999999998654 3456775411 0000 1111111112245678999999
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEec-cceEEEeccCcccHHHHHHhcccc
Q 005670 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDT-KDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~-~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|.+.++ +++.|..+|| +..+.+++++. .+.. .++.+|+|+|..+..+
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~---------~i~~hp~FrviAT~Np~g~Gd-------- 192 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQNR---------VIRAHPAFRLFATANTIGLGD-------- 192 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCce---------EecCCCCeEEEEeeCCCCcCC--------
Confidence 999887 9999999999 66777755442 3322 3688999988543100
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhc
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~ 551 (684)
.-|. ... -+.+...+++||-+++.+..+++++-.+|+..
T Consensus 193 -~~G~----y~G-------------------------t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 193 -TTGL----YHG-------------------------TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred -CCcc----eee-------------------------eecCCHHHHhheeeEeeCCCCCHHHHHHHHHh
Confidence 0000 000 01356788999998888999998888888764
No 157
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.38 E-value=1e-11 Score=132.09 Aligned_cols=62 Identities=39% Similarity=0.607 Sum_probs=48.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--C
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--V 356 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--~ 356 (684)
+|||.+|.++.-..+. -+.++ +.+ .+.+|+.||||||||.||-+||++|| .
T Consensus 41 ~VGQ~~AReAaGvIv~----mik~g----k~a-------------------GrgiLi~GppgTGKTAlA~gIa~eLG~dv 93 (450)
T COG1224 41 LVGQEEAREAAGVIVK----MIKQG----KMA-------------------GRGILIVGPPGTGKTALAMGIARELGEDV 93 (450)
T ss_pred ccchHHHHHhhhHHHH----HHHhC----ccc-------------------ccEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 6999999988776663 11111 111 27999999999999999999999996 6
Q ss_pred CEEEEeccccc
Q 005670 357 PFVIADATTLT 367 (684)
Q Consensus 357 pfv~i~~s~l~ 367 (684)
||+.++++++-
T Consensus 94 PF~~isgsEiY 104 (450)
T COG1224 94 PFVAISGSEIY 104 (450)
T ss_pred Cceeeccceee
Confidence 99999988764
No 158
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.36 E-value=2.2e-11 Score=125.41 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=52.3
Q ss_pred ccccccccc--eEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 005670 524 IPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLEN 601 (684)
Q Consensus 524 ~PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~ 601 (684)
.|+|++|+. .++.+.+++.+++.+++++.. ..+ .+.++++++++|+++ -+.++|.|.+++++
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a-----------~~~--~~~l~~~v~~~L~~~---~~~d~r~l~~~l~~ 212 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRA-----------RLR--GFELPEDVGRFLLKR---LDREMRTLFMTLDQ 212 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHh---hcCCHHHHHHHHHH
Confidence 478889984 689999999999999886411 112 478999999999997 45678999999998
Q ss_pred HHHHH
Q 005670 602 ILMDA 606 (684)
Q Consensus 602 ~l~~a 606 (684)
+-..+
T Consensus 213 l~~~~ 217 (235)
T PRK08084 213 LDRAS 217 (235)
T ss_pred HHHHH
Confidence 64333
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.35 E-value=6.1e-12 Score=151.17 Aligned_cols=187 Identities=24% Similarity=0.285 Sum_probs=128.6
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (684)
|+|+++.++.+.+.+.+.. +.+++|+||||||||++|+++|+.+
T Consensus 175 ~igr~~ei~~~~~~l~r~~--------------------------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 222 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRRT--------------------------------KNNPVLIGEPGVGKTAIVEGLAQRIVNGD 222 (852)
T ss_pred CCCcHHHHHHHHHHHhcCC--------------------------------CCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence 8999999998888885211 2688999999999999999999986
Q ss_pred ------CCCEEEEeccccc-ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHH
Q 005670 355 ------NVPFVIADATTLT-QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 355 ------~~pfv~i~~s~l~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~ 427 (684)
+.+++.+++..+. ...|.|.- +..+..++..... ...+.||||||||.+...... .++ ..+++
T Consensus 223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~g~~-~~~-----~d~~~ 292 (852)
T TIGR03346 223 VPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTK---SEGQIILFIDELHTLVGAGKA-EGA-----MDAGN 292 (852)
T ss_pred CchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHh---cCCCeEEEeccHHHhhcCCCC-cch-----hHHHH
Confidence 4578888877764 34677754 6677777765321 124689999999999764211 111 22667
Q ss_pred HHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhH
Q 005670 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~ 507 (684)
.|+.+++ + ..+.+|.++|..+..+.+
T Consensus 293 ~Lk~~l~---------------~--------g~i~~IgaTt~~e~r~~~------------------------------- 318 (852)
T TIGR03346 293 MLKPALA---------------R--------GELHCIGATTLDEYRKYI------------------------------- 318 (852)
T ss_pred Hhchhhh---------------c--------CceEEEEeCcHHHHHHHh-------------------------------
Confidence 6766665 1 137778887733211111
Q ss_pred HHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhc
Q 005670 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKA 585 (684)
Q Consensus 508 ~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a 585 (684)
...|+|.+||. .|.+..++.++..+|++. +..+|.. ...+.++++++..++..+
T Consensus 319 --------------~~d~al~rRf~-~i~v~~p~~~~~~~iL~~----~~~~~e~-----~~~v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 319 --------------EKDAALERRFQ-PVFVDEPTVEDTISILRG----LKERYEV-----HHGVRITDPAIVAAATLS 372 (852)
T ss_pred --------------hcCHHHHhcCC-EEEeCCCCHHHHHHHHHH----HHHHhcc-----ccCCCCCHHHHHHHHHhc
Confidence 14588899997 467888899999998865 4444432 235667888888888654
No 160
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.35 E-value=4.3e-12 Score=128.41 Aligned_cols=186 Identities=24% Similarity=0.317 Sum_probs=125.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
.|||.++.++.|...... .+ -.|++|.||||||||+-+.++|+++=.
T Consensus 28 dIVGNe~tv~rl~via~~-------------------gn-------------mP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKE-------------------GN-------------MPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HhhCCHHHHHHHHHHHHc-------------------CC-------------CCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 489999999999987741 11 159999999999999999999999822
Q ss_pred ----CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHH
Q 005670 357 ----PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ----pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
-+.+.|+++ -.|-++-+.--+.|....-.+......||++||+|.+... +|++|.+.
T Consensus 76 ~~ke~vLELNASd-----eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRt 136 (333)
T KOG0991|consen 76 SYKEAVLELNASD-----ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRT 136 (333)
T ss_pred hhhhHhhhccCcc-----ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHH
Confidence 255556643 4455544444445554443333456789999999999865 99999999
Q ss_pred HcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhh
Q 005670 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~ 512 (684)
|| +..+.+.|.+++|..+ .
T Consensus 137 ME---------------------iyS~ttRFalaCN~s~--------------------------------K-------- 155 (333)
T KOG0991|consen 137 ME---------------------IYSNTTRFALACNQSE--------------------------------K-------- 155 (333)
T ss_pred HH---------------------HHcccchhhhhhcchh--------------------------------h--------
Confidence 99 2333456666666221 1
Q ss_pred ccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCH
Q 005670 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GA 592 (684)
++.++.+|+. ++.|..++..++..-+.... + .-++.++++.++.+.-. ..++.
T Consensus 156 ----------IiEPIQSRCA-iLRysklsd~qiL~Rl~~v~-----------k--~Ekv~yt~dgLeaiift---a~GDM 208 (333)
T KOG0991|consen 156 ----------IIEPIQSRCA-ILRYSKLSDQQILKRLLEVA-----------K--AEKVNYTDDGLEAIIFT---AQGDM 208 (333)
T ss_pred ----------hhhhHHhhhH-hhhhcccCHHHHHHHHHHHH-----------H--HhCCCCCcchHHHhhhh---ccchH
Confidence 2234555655 78888898877655443311 1 12678999999998874 45666
Q ss_pred HHHHHHHHHH
Q 005670 593 RGLRSLLENI 602 (684)
Q Consensus 593 R~Lr~iIe~~ 602 (684)
|+--|.+|..
T Consensus 209 RQalNnLQst 218 (333)
T KOG0991|consen 209 RQALNNLQST 218 (333)
T ss_pred HHHHHHHHHH
Confidence 7666666653
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-11 Score=143.46 Aligned_cols=192 Identities=22% Similarity=0.269 Sum_probs=139.2
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (684)
-...|+. |||.++.++++.+.+.+.. +.|.+|+|+||+|||.++..+
T Consensus 165 r~gklDP-vIGRd~EI~r~iqIL~RR~--------------------------------KNNPvLiGEpGVGKTAIvEGL 211 (786)
T COG0542 165 REGKLDP-VIGRDEEIRRTIQILSRRT--------------------------------KNNPVLVGEPGVGKTAIVEGL 211 (786)
T ss_pred hcCCCCC-CcChHHHHHHHHHHHhccC--------------------------------CCCCeEecCCCCCHHHHHHHH
Confidence 3334444 8999999999999986221 278899999999999999999
Q ss_pred HHHh----------CCCEEEEeccccc-ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccC-CC
Q 005670 351 ARYV----------NVPFVIADATTLT-QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI-SR 418 (684)
Q Consensus 351 A~~l----------~~pfv~i~~s~l~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~-~~ 418 (684)
|..+ +..++..|+..+. .++|.|+- +..+..+++.. .++.+.||||||||.+... +...+ ..
T Consensus 212 A~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~ev----~~~~~vILFIDEiHtiVGA-G~~~G~a~ 285 (786)
T COG0542 212 AQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKEV----EKSKNVILFIDEIHTIVGA-GATEGGAM 285 (786)
T ss_pred HHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHHH----hcCCCeEEEEechhhhcCC-Cccccccc
Confidence 9987 2348888988876 56799975 77888887763 3445899999999999875 22211 23
Q ss_pred CCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccccccc
Q 005670 419 DVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (684)
Q Consensus 419 d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~ 497 (684)
| +.|.|..+|. |+ +..|.+++
T Consensus 286 D-----AaNiLKPaLARGe------------------------L~~IGATT----------------------------- 307 (786)
T COG0542 286 D-----AANLLKPALARGE------------------------LRCIGATT----------------------------- 307 (786)
T ss_pred c-----hhhhhHHHHhcCC------------------------eEEEEecc-----------------------------
Confidence 4 8888999987 32 33445554
Q ss_pred CCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHH
Q 005670 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA 577 (684)
Q Consensus 498 ~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eA 577 (684)
.+.+++.++++.++.++| . .|.+..++.++-..|++- +..+|... ..+.++++|
T Consensus 308 --------~~EYRk~iEKD~AL~RRF--------Q-~V~V~EPs~e~ti~ILrG----lk~~yE~h-----H~V~i~D~A 361 (786)
T COG0542 308 --------LDEYRKYIEKDAALERRF--------Q-KVLVDEPSVEDTIAILRG----LKERYEAH-----HGVRITDEA 361 (786)
T ss_pred --------HHHHHHHhhhchHHHhcC--------c-eeeCCCCCHHHHHHHHHH----HHHHHHHc-----cCceecHHH
Confidence 234555566555554444 4 488899999999999986 66666552 367788888
Q ss_pred HHHHHHhc
Q 005670 578 LRLIAKKA 585 (684)
Q Consensus 578 l~~La~~a 585 (684)
+.+.+..+
T Consensus 362 l~aAv~LS 369 (786)
T COG0542 362 LVAAVTLS 369 (786)
T ss_pred HHHHHHHH
Confidence 88877764
No 162
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=4.4e-11 Score=131.07 Aligned_cols=213 Identities=21% Similarity=0.221 Sum_probs=130.4
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (684)
+.++|.++.++.|...+..... + ..+.+++++||||||||++++.+++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~----~------------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR----G------------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999888853211 0 012679999999999999999999887
Q ss_pred ---CCCEEEEeccccccc----------------ccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccccc
Q 005670 355 ---NVPFVIADATTLTQA----------------RYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (684)
Q Consensus 355 ---~~pfv~i~~s~l~~s----------------~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~ 415 (684)
+..++.++|...... ...|......+..+.+... ....+.||+|||+|.+....
T Consensus 82 ~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~viviDE~d~l~~~~---- 154 (394)
T PRK00411 82 IAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD---ERDRVLIVALDDINYLFEKE---- 154 (394)
T ss_pred hcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCHhHhhccC----
Confidence 467889998754310 0011111112222111100 01234799999999997211
Q ss_pred CCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccccc
Q 005670 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (684)
Q Consensus 416 ~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~ 495 (684)
+......|++.++. ....++.+|++||..++.+.
T Consensus 155 ------~~~~l~~l~~~~~~--------------------~~~~~v~vI~i~~~~~~~~~-------------------- 188 (394)
T PRK00411 155 ------GNDVLYSLLRAHEE--------------------YPGARIGVIGISSDLTFLYI-------------------- 188 (394)
T ss_pred ------CchHHHHHHHhhhc--------------------cCCCeEEEEEEECCcchhhh--------------------
Confidence 11256666666651 11225777888774332111
Q ss_pred ccCCCchhhhhHHHHhhccchhhhhhcCcccccccc-ceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc
Q 005670 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF-PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 496 ~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~-d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s 574 (684)
+.|.+.+|+ ...|.|+|++.+++.+|++..+. . -+ ....++
T Consensus 189 ---------------------------l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~---~----~~----~~~~~~ 230 (394)
T PRK00411 189 ---------------------------LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE---E----GF----YPGVVD 230 (394)
T ss_pred ---------------------------cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH---h----hc----ccCCCC
Confidence 223334444 24689999999999999875321 1 01 123589
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q 005670 575 ENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
+++++.+++......+++|.+-.++.+++..+..
T Consensus 231 ~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 231 DEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 9999999997544456688888888776665543
No 163
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.34 E-value=2e-11 Score=127.71 Aligned_cols=212 Identities=19% Similarity=0.249 Sum_probs=133.6
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005670 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (684)
.+...|+..|++.+.||.-|++.+..++..|+.. ..+.+| -.+-|+|+|||||..
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-------------~~p~KP------------LvLSfHG~tGTGKN~ 125 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-------------PNPRKP------------LVLSFHGWTGTGKNY 125 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-------------CCCCCC------------eEEEecCCCCCchhH
Confidence 3455699999999999999999999999766552 112233 677799999999999
Q ss_pred HHHHHHHHhC-----CCEEEEecc--cccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCC
Q 005670 346 LAKTLARYVN-----VPFVIADAT--TLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (684)
Q Consensus 346 LAraLA~~l~-----~pfv~i~~s--~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~ 418 (684)
+++.||+.+. .+||..=.+ .+..+.++-.- ...+. ..-.+.+..++.+++++||+|+|++.
T Consensus 126 Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y-k~eL~---~~v~~~v~~C~rslFIFDE~DKmp~g-------- 193 (344)
T KOG2170|consen 126 VAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY-KEELK---NRVRGTVQACQRSLFIFDEVDKLPPG-------- 193 (344)
T ss_pred HHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH-HHHHH---HHHHHHHHhcCCceEEechhhhcCHh--------
Confidence 9999999983 233321111 11111221111 11122 22234456778899999999999987
Q ss_pred CCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCccc--H----HHHHHhccccCCCCCCcccc
Q 005670 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD--I----EKTISERRQDSSIGFGAPVR 492 (684)
Q Consensus 419 d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~d--L----e~~i~~r~~~~~lgf~~~~~ 492 (684)
+.+.|-..||-.. ....+|+++.|||+-+|..+ + -+..+.+..++++++..-.
T Consensus 194 ------Lld~lkpfLdyyp--------------~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E- 252 (344)
T KOG2170|consen 194 ------LLDVLKPFLDYYP--------------QVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFE- 252 (344)
T ss_pred ------HHHHHhhhhcccc--------------ccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhh-
Confidence 8888888887110 01137899999999888765 2 2333455556666543321
Q ss_pred cccccCCCchhhhhHHHHhhccch---hhhhhcCccccccccceEEEccccCHHHHHHHHhc
Q 005670 493 ANMRAGGVTDAVVTSSLMETVESS---DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 493 ~~~~~~~~~~~~~~~~Ll~~v~~~---dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~ 551 (684)
..++...... -+....+++ ..+||..|+|.|++..+....++-
T Consensus 253 --------------~~L~~~~~n~~~~Gl~~S~li~--~~lid~fIPFLPLek~hV~~C~r~ 298 (344)
T KOG2170|consen 253 --------------PALMQSAFNEKAGGLVHSRLIS--NNLIDHFIPFLPLEKRHVRSCIRA 298 (344)
T ss_pred --------------HHHHHhhhccccccccccccch--hhHHhhccCcCcccHHHHHHHHHH
Confidence 1122111110 111112222 356889999999999999888764
No 164
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.33 E-value=2.9e-11 Score=140.98 Aligned_cols=205 Identities=15% Similarity=0.224 Sum_probs=132.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccce-EEEEccCCCcHHHHHHHHHHHhC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVN- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-vLL~GPPGTGKT~LAraLA~~l~- 355 (684)
.+.|.|+.++.|..++...... ..+.+ ++++|+||||||.+++.+.+.+.
T Consensus 756 ~LPhREeEIeeLasfL~paIkg----------------------------sgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQ----------------------------SGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhc----------------------------CCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999888632220 00134 56999999999999999987761
Q ss_pred ---------CCEEEEecccccccc---------------cccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccc
Q 005670 356 ---------VPFVIADATTLTQAR---------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (684)
Q Consensus 356 ---------~pfv~i~~s~l~~s~---------------yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r 411 (684)
..++.+||..+.... ..|......+..++..... ......||+|||||.|...
T Consensus 808 eaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK- 884 (1164)
T PTZ00112 808 KTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITK- 884 (1164)
T ss_pred HHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCcc-
Confidence 457899996544110 0111112334444432210 0112359999999999765
Q ss_pred ccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccc
Q 005670 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 412 ~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~ 491 (684)
.+..|+.+++... .....+++|+.+|..++-.
T Consensus 885 -------------~QDVLYnLFR~~~------------------~s~SKLiLIGISNdlDLpe----------------- 916 (1164)
T PTZ00112 885 -------------TQKVLFTLFDWPT------------------KINSKLVLIAISNTMDLPE----------------- 916 (1164)
T ss_pred -------------HHHHHHHHHHHhh------------------ccCCeEEEEEecCchhcch-----------------
Confidence 4667777776100 1123477888777322100
Q ss_pred ccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccce-EEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcc
Q 005670 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~ 570 (684)
.+.|.+.+|+.. .+.|+||+.+++.+||...+.. ..
T Consensus 917 ------------------------------rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~-------------A~ 953 (1164)
T PTZ00112 917 ------------------------------RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-------------CK 953 (1164)
T ss_pred ------------------------------hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh-------------CC
Confidence 133456666643 4889999999999999763211 02
Q ss_pred ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
..++++|++++|+++....++||..-.++++++.
T Consensus 954 gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 954 EIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred CCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 3599999999999877777889988888887765
No 165
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5e-12 Score=135.99 Aligned_cols=192 Identities=22% Similarity=0.322 Sum_probs=131.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
+|+|||||||||||++|+-||+..|..+....+.++.+- |...-..+.++|.-+.. ...+-+|||||+|.+..+
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl---G~qaVTkiH~lFDWakk---S~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL---GAQAVTKIHKLFDWAKK---SRRGLLLFIDEADAFLCE 458 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc---chHHHHHHHHHHHHHhh---cccceEEEehhhHHHHHH
Confidence 799999999999999999999999999988888887643 33323446667655432 234568999999999888
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~ 490 (684)
|....++.+ .-.+|-.+|= . .| + -.+++++++++|..+
T Consensus 459 RnktymSEa-----qRsaLNAlLf----R---TG-------d----qSrdivLvlAtNrpg------------------- 496 (630)
T KOG0742|consen 459 RNKTYMSEA-----QRSALNALLF----R---TG-------D----QSRDIVLVLATNRPG------------------- 496 (630)
T ss_pred hchhhhcHH-----HHHHHHHHHH----H---hc-------c----cccceEEEeccCCcc-------------------
Confidence 765443333 3333333332 0 01 0 134588888888432
Q ss_pred cccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHH---------HHH
Q 005670 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK---------QYR 561 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~k---------q~~ 561 (684)
.|.-..-+|||.+|.|+-+-+|+..+++..+++..+. .|.
T Consensus 497 -------------------------------dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~ 545 (630)
T KOG0742|consen 497 -------------------------------DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWS 545 (630)
T ss_pred -------------------------------chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhh
Confidence 1334456899999999999999999999987766542 234
Q ss_pred HHHHhcCcccc----ccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 562 KMFQMNGVKLH----FTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 562 ~~~~~~gi~l~----~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
.+|+....++. .+++.+...+++ +.++..|+|-.++-..-
T Consensus 546 ~lfkk~sQ~i~l~~~~t~~~~~EaAkk--TeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 546 HLFKKESQRIKLAGFDTGRKCSEAAKK--TEGFSGREIAKLVASVQ 589 (630)
T ss_pred HHHhhhhheeeeccchHHHHHHHHHHh--ccCCcHHHHHHHHHHHH
Confidence 45544333443 455667777774 67888899998886543
No 166
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.33 E-value=3.7e-11 Score=130.24 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=128.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.++|.++.++.|...+..... + ..+.+++++||||||||++++.+++.+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~----~------------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR----G------------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999999999988852111 0 0126899999999999999999988763
Q ss_pred -------CCEEEEecccccccc---------c---------ccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 356 -------VPFVIADATTLTQAR---------Y---------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 356 -------~pfv~i~~s~l~~s~---------y---------vG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
..++.++|....... + .|......+..+++... ....+.||+|||+|.+...
T Consensus 68 ~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~ 144 (365)
T TIGR02928 68 AEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGD 144 (365)
T ss_pred hhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccC
Confidence 468888987653100 0 01111111222221100 1134579999999999632
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~ 490 (684)
. +.+...|+++.+- . .....++.+|+++|..++.+
T Consensus 145 ~-----------~~~L~~l~~~~~~--------~----------~~~~~~v~lI~i~n~~~~~~---------------- 179 (365)
T TIGR02928 145 D-----------DDLLYQLSRARSN--------G----------DLDNAKVGVIGISNDLKFRE---------------- 179 (365)
T ss_pred C-----------cHHHHhHhccccc--------c----------CCCCCeEEEEEEECCcchHh----------------
Confidence 0 0144444444220 0 11224577777777332100
Q ss_pred cccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc-eEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCc
Q 005670 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV 569 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d-~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi 569 (684)
.+.+.+.+|+. ..+.|+|++.+++.+|++..+.. . ..
T Consensus 180 -------------------------------~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~-------~----~~ 217 (365)
T TIGR02928 180 -------------------------------NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEK-------A----FY 217 (365)
T ss_pred -------------------------------hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHh-------h----cc
Confidence 12244455663 57999999999999998763210 0 01
Q ss_pred cccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q 005670 570 KLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 570 ~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
...++++++++++..+....+.+|...+++++++..+..
T Consensus 218 ~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 218 DGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred CCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 335889999998886544456688888888887765543
No 167
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.33 E-value=1.5e-11 Score=136.01 Aligned_cols=173 Identities=17% Similarity=0.270 Sum_probs=112.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccch---hHHHHHHHHhcccchHhhhcCcEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQARYVGED---VESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~i~~s~l~~s~yvG~~---~~~~l~~l~~~a~~~v~~a~~gILfID 402 (684)
.+++|+||||+|||+|++++++.+ +..++.+++.++.. .+...- ....+...+ ....+|+||
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~dlLiiD 206 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEEFKEKY---------RSVDLLLID 206 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHHHHHHH---------HhCCEEEEe
Confidence 578999999999999999999987 45688888876541 111110 001111111 123699999
Q ss_pred cccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc
Q 005670 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 403 EIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|++.+.... ..+..|+.+++... + .+..+|+|++... .
T Consensus 207 Di~~l~~~~------------~~~~~l~~~~n~~~-------------------~-~~~~iiits~~~p-~--------- 244 (405)
T TIGR00362 207 DIQFLAGKE------------RTQEEFFHTFNALH-------------------E-NGKQIVLTSDRPP-K--------- 244 (405)
T ss_pred hhhhhcCCH------------HHHHHHHHHHHHHH-------------------H-CCCCEEEecCCCH-H---------
Confidence 999986531 25666777776100 0 0122344554210 0
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc--eEEEccccCHHHHHHHHhchHHHHHHHH
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~ 560 (684)
.+ ..+.+.+.+|+. .++.+.+++.+++.+|++..+..
T Consensus 245 --------------------------~l----------~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----- 283 (405)
T TIGR00362 245 --------------------------EL----------PGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE----- 283 (405)
T ss_pred --------------------------HH----------hhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH-----
Confidence 00 013456778885 57999999999999998763211
Q ss_pred HHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 005670 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 561 ~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
..+.++++++++|++. ...++|.|+.+|.++...+.
T Consensus 284 --------~~~~l~~e~l~~ia~~---~~~~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 284 --------EGLELPDEVLEFIAKN---IRSNVRELEGALNRLLAYAS 319 (405)
T ss_pred --------cCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHH
Confidence 1577899999999986 45567999999999877664
No 168
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.33 E-value=8.7e-12 Score=144.48 Aligned_cols=141 Identities=21% Similarity=0.314 Sum_probs=85.1
Q ss_pred HhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCC-CeEEEeccceEEEeccCc
Q 005670 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG-DNIQIDTKDILFICGGAF 469 (684)
Q Consensus 391 v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g-~~i~id~~niIfI~tgn~ 469 (684)
+.++++|+|||||++.|.+. +|..|+++|+...+.+........+.. +... -..++.+|++++.
T Consensus 213 L~~AngGtL~Ldei~~L~~~--------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~-ip~dvrvIa~~~~ 277 (608)
T TIGR00764 213 IHRAHKGVLYIDEIKTMPLE--------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEP-VPCDFILVASGNL 277 (608)
T ss_pred eEECCCCEEEEEChHhCCHH--------------HHHHHHHHHHhCcEEecCccccccccccCCCC-CccceEEEEECCH
Confidence 34677899999999999876 999999999854444321110000000 0001 1225678888772
Q ss_pred ccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc---eEEEcccc---CHH
Q 005670 470 VDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP---VLVSLLAL---TEN 543 (684)
Q Consensus 470 ~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d---~iI~f~pL---see 543 (684)
.+ ...+.|+|+.||+ ..+.|.+. +.+
T Consensus 278 ~~------------------------------------------------l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e 309 (608)
T TIGR00764 278 DD------------------------------------------------LEGMHPALRSRIRGYGYEVYMKDTMPDTPE 309 (608)
T ss_pred HH------------------------------------------------HhhcCHHHHHHhcCCeEEEEeeccCCCCHH
Confidence 10 0136799999999 66666543 555
Q ss_pred HHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcC-------CCCCCHHHHHHHHHHH
Q 005670 544 QLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI-------SKNTGARGLRSLLENI 602 (684)
Q Consensus 544 el~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~-------~~~~GAR~Lr~iIe~~ 602 (684)
...++++. +.++ ++.+|....++++|++.|.+++. .+....|.|.++++..
T Consensus 310 ~~~~~~~~----i~~~----~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 310 NRDKLVQF----VAQE----VKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHHHHHH----HHHH----HHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 55555432 3222 23344455899999999987532 2334567777777765
No 169
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.33 E-value=2.6e-11 Score=143.29 Aligned_cols=160 Identities=15% Similarity=0.144 Sum_probs=93.2
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (684)
+.+.+...|.|.+.+|+.|.-++.....+.. . ....|...-....-....+|||+|+||||||.+|+++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~-------~----~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~I 512 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSGNKNSS-------D----FNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYT 512 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcCCcccc-------c----cccccccccccccccCCceEEEeCCCCccHHHHHHHH
Confidence 3445555699999999988766642211000 0 0000000000001122369999999999999999999
Q ss_pred HHHhC-------CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcch
Q 005670 351 ARYVN-------VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 351 A~~l~-------~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (684)
++... .++..++++... .+.+.. ...+....+.+..+.+|+++|||++++...
T Consensus 513 h~lspR~~ytsG~~~s~vgLTa~~--~~~d~~-----tG~~~le~GaLvlAdgGtL~IDEidkms~~------------- 572 (915)
T PTZ00111 513 HLLSPRSIYTSGKSSSSVGLTASI--KFNESD-----NGRAMIQPGAVVLANGGVCCIDELDKCHNE------------- 572 (915)
T ss_pred HHhCCccccCCCCCCccccccchh--hhcccc-----cCcccccCCcEEEcCCCeEEecchhhCCHH-------------
Confidence 99763 234444443321 000000 000112234456678899999999999887
Q ss_pred HHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcc
Q 005670 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~ 470 (684)
.|.+|+++||...+.|...|... . -..++.+|+++|..
T Consensus 573 -~Q~aLlEaMEqqtIsI~KaGi~~-------t-L~ar~rVIAAaNP~ 610 (915)
T PTZ00111 573 -SRLSLYEVMEQQTVTIAKAGIVA-------T-LKAETAILASCNPI 610 (915)
T ss_pred -HHHHHHHHHhCCEEEEecCCcce-------e-cCCCeEEEEEcCCc
Confidence 89999999996666553333221 1 12357888888853
No 170
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.6e-11 Score=131.77 Aligned_cols=169 Identities=18% Similarity=0.240 Sum_probs=116.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
++.|||||||||||++.-|+|++++..++-++.++... ...++.++...+ ..+||+|.+||.....
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--------n~dLr~LL~~t~------~kSIivIEDIDcs~~l 301 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--------DSDLRHLLLATP------NKSILLIEDIDCSFDL 301 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC--------cHHHHHHHHhCC------CCcEEEEeeccccccc
Confidence 79999999999999999999999999988888776652 223888887765 5699999999997553
Q ss_pred cccccCC----CCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCC
Q 005670 411 AESLNIS----RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 411 r~~~~~~----~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lg 486 (684)
++..... .+....-.++-||..+||-.-. ....-|+|||+|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-----------------cg~ERIivFTTNh~E--------------- 349 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-----------------CGDERIIVFTTNHKE--------------- 349 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhhcccccc-----------------CCCceEEEEecCChh---------------
Confidence 3221111 1112224678899999963211 111357888999542
Q ss_pred CCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchH-----HHHHHH
Q 005670 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPK-----NALGKQ 559 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l-----~~L~kq 559 (684)
.|.|+|++ |+|..|.+.--+.+.+..++...+ ..|..+
T Consensus 350 -----------------------------------kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~e 394 (457)
T KOG0743|consen 350 -----------------------------------KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDE 394 (457)
T ss_pred -----------------------------------hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHH
Confidence 35677775 999999999999999988877654 334455
Q ss_pred HHHHHHhcCccccccH-HHHHHHHHh
Q 005670 560 YRKMFQMNGVKLHFTE-NALRLIAKK 584 (684)
Q Consensus 560 ~~~~~~~~gi~l~~s~-eAl~~La~~ 584 (684)
+.+... ...+|| ++.+.|+..
T Consensus 395 ie~l~~----~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 395 IERLIE----ETEVTPAQVAEELMKN 416 (457)
T ss_pred HHHHhh----cCccCHHHHHHHHhhc
Confidence 544322 345665 455555553
No 171
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.31 E-value=1.1e-12 Score=123.15 Aligned_cols=121 Identities=26% Similarity=0.427 Sum_probs=73.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc-ccccccchhHHHHHHHHhcccchH--hhhcCcEEEEecccccc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-QARYVGEDVESILYKLLTVSDYNV--AAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~-~s~yvG~~~~~~l~~l~~~a~~~v--~~a~~gILfIDEIDkl~ 408 (684)
+|||+||||||||++|+.+|+.++.+++.+.++.-. +..+.|.-... .......++.+ ....+++++||||+++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 589999999999999999999999999999988644 22333322111 00011111111 12367999999999998
Q ss_pred cccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcc
Q 005670 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~ 470 (684)
+. +++.|+.++|+..+.++..+......... .-..++.+|+|+|..
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNPR 124 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESSS
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcCC
Confidence 76 99999999996666554333221111110 111258999999843
No 172
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.31 E-value=1.6e-11 Score=132.31 Aligned_cols=63 Identities=33% Similarity=0.518 Sum_probs=45.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
-+|||.+|.++....+..- ..+ .-+ .+.+||.||||||||.||-++|++++
T Consensus 25 GlVGQ~~AReAagiiv~mI----k~~----K~a-------------------Gr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMI----KEG----KIA-------------------GRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp TEES-HHHHHHHHHHHHHH----HTT------T-------------------T-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccChHHHHHHHHHHHHHH----hcc----ccc-------------------CcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 3799999999887776411 111 111 27999999999999999999999996
Q ss_pred CCEEEEeccccc
Q 005670 356 VPFVIADATTLT 367 (684)
Q Consensus 356 ~pfv~i~~s~l~ 367 (684)
.||+.++++++.
T Consensus 78 ~PF~~isgSEiy 89 (398)
T PF06068_consen 78 VPFVSISGSEIY 89 (398)
T ss_dssp S-EEEEEGGGG-
T ss_pred CCeeEcccceee
Confidence 799999998765
No 173
>PRK08727 hypothetical protein; Validated
Probab=99.30 E-value=6.7e-11 Score=121.66 Aligned_cols=168 Identities=20% Similarity=0.275 Sum_probs=107.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
..++|+||+|||||+|+++++..+ +...+.+++.++. ..+.+.++.- ....+|+|||++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~l------~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----------GRLRDALEAL------EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----------hhHHHHHHHH------hcCCEEEEeCcccc
Confidence 469999999999999999998776 3444555554432 1111222211 13369999999998
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
..... .+..|+.+++.. ..+..-+|+|++.. ..+
T Consensus 106 ~~~~~------------~~~~lf~l~n~~--------------------~~~~~~vI~ts~~~-p~~------------- 139 (233)
T PRK08727 106 AGQRE------------DEVALFDFHNRA--------------------RAAGITLLYTARQM-PDG------------- 139 (233)
T ss_pred cCChH------------HHHHHHHHHHHH--------------------HHcCCeEEEECCCC-hhh-------------
Confidence 64311 345666766510 00123355565521 000
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccccc--ceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~--d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
+ ..+.|++.+|+ ..++.|++++.+++.+|++..+..
T Consensus 140 ---------------------l-----------~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~---------- 177 (233)
T PRK08727 140 ---------------------L-----------ALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR---------- 177 (233)
T ss_pred ---------------------h-----------hhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH----------
Confidence 0 01347777886 568999999999999998752111
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
+ .+.++++++++|+++ .+..+|.+.++++.+...++.
T Consensus 178 -~--~l~l~~e~~~~La~~---~~rd~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 178 -R--GLALDEAAIDWLLTH---GERELAGLVALLDRLDRESLA 214 (233)
T ss_pred -c--CCCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH
Confidence 1 578999999999997 235679999999987654543
No 174
>PHA02244 ATPase-like protein
Probab=99.29 E-value=1.2e-10 Score=126.41 Aligned_cols=184 Identities=16% Similarity=0.189 Sum_probs=107.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
.++||+||||||||++|+++|..++.||+.++... ......|..... ..+...+..-....+++|+|||++.+.++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~-d~~~L~G~i~~~---g~~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM-DEFELKGFIDAN---GKFHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh-HHHhhccccccc---ccccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 68999999999999999999999999999988431 111112210000 00111111111246789999999999887
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~ 490 (684)
++..|..++++..+..+. .. .....++.+|+|+|... -|+...
T Consensus 196 --------------vq~~L~~lLd~r~l~l~g---------~~-i~~h~~FRlIATsN~~~-------------~G~~~~ 238 (383)
T PHA02244 196 --------------ALIIINSAIANKFFDFAD---------ER-VTAHEDFRVISAGNTLG-------------KGADHI 238 (383)
T ss_pred --------------HHHHHHHHhccCeEEecC---------cE-EecCCCEEEEEeeCCCc-------------cCcccc
Confidence 999999999855544321 11 11234688999988431 011000
Q ss_pred cccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHh--chHHHHHHHHHHHHHhcC
Q 005670 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT--EPKNALGKQYRKMFQMNG 568 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~--~~l~~L~kq~~~~~~~~g 568 (684)
-.. .+.+.+++++||- +|.|..+++.|. .|+. ..+-.+....++.+...+
T Consensus 239 y~G--------------------------~k~L~~AllDRFv-~I~~dyp~~~E~-~i~~~~~~lv~~a~~lR~~~~~~~ 290 (383)
T PHA02244 239 YVA--------------------------RNKIDGATLDRFA-PIEFDYDEKIEH-LISNGDEDLVNFVALLRHEMAEKG 290 (383)
T ss_pred cCC--------------------------CcccCHHHHhhcE-EeeCCCCcHHHH-HHhhhHHHHHHHHHHHHHHHhcCC
Confidence 000 1246788999996 577777664333 2322 112222333333344456
Q ss_pred ccccccHHHHHHHHH
Q 005670 569 VKLHFTENALRLIAK 583 (684)
Q Consensus 569 i~l~~s~eAl~~La~ 583 (684)
+...++..++-+.++
T Consensus 291 l~~~~StR~li~~a~ 305 (383)
T PHA02244 291 LDHVFSMRAIIHGKK 305 (383)
T ss_pred CCccccHHHHHHHHH
Confidence 666677666666665
No 175
>PRK06893 DNA replication initiation factor; Validated
Probab=99.29 E-value=6.5e-11 Score=121.41 Aligned_cols=165 Identities=15% Similarity=0.234 Sum_probs=104.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
..++|+||||||||+|++++++.+ +.....+++.... . ...+.+... .+..+|+||||+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~-------~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---Y-------FSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---h-------hhHHHHhhc------ccCCEEEEeChhhh
Confidence 357999999999999999999886 2333444443211 0 011112111 13469999999998
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
.... ..+..|+.+++.. .+....++|+|++...
T Consensus 104 ~~~~------------~~~~~l~~l~n~~-------------------~~~~~~illits~~~p---------------- 136 (229)
T PRK06893 104 IGNE------------EWELAIFDLFNRI-------------------KEQGKTLLLISADCSP---------------- 136 (229)
T ss_pred cCCh------------HHHHHHHHHHHHH-------------------HHcCCcEEEEeCCCCh----------------
Confidence 6431 1345677777610 0112244555665210
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccccc--ceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~--d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
.. +. ...|++.+|+ ..++.+.+++.+++.+|+++.+.
T Consensus 137 ---------------~~-----l~----------~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~----------- 175 (229)
T PRK06893 137 ---------------HA-----LS----------IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY----------- 175 (229)
T ss_pred ---------------HH-----cc----------ccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH-----------
Confidence 00 00 1225677776 46889999999999999876221
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.+ .+.++++++++|+++ .+.+.|.|..+|+++-.
T Consensus 176 ~~--~l~l~~~v~~~L~~~---~~~d~r~l~~~l~~l~~ 209 (229)
T PRK06893 176 QR--GIELSDEVANFLLKR---LDRDMHTLFDALDLLDK 209 (229)
T ss_pred Hc--CCCCCHHHHHHHHHh---ccCCHHHHHHHHHHHHH
Confidence 11 588999999999996 45678999999998743
No 176
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.28 E-value=2.5e-11 Score=136.22 Aligned_cols=176 Identities=17% Similarity=0.295 Sum_probs=111.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 405 (684)
.+++|+||||+|||+|++++++.+ +..++.+++.++. ..++..-.......+... -....+|+||||+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT-NDFVNALRNNTMEEFKEK------YRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHHHcCcHHHHHHH------HhcCCEEEEehhh
Confidence 569999999999999999999998 3457788887665 122111000001111110 0134699999999
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCC
Q 005670 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~l 485 (684)
.+.... ..+..|+.+++... +.... +|++++...
T Consensus 222 ~l~~~~------------~~~~~l~~~~n~l~-------------------~~~~~-iiits~~~p-------------- 255 (450)
T PRK00149 222 FLAGKE------------RTQEEFFHTFNALH-------------------EAGKQ-IVLTSDRPP-------------- 255 (450)
T ss_pred hhcCCH------------HHHHHHHHHHHHHH-------------------HCCCc-EEEECCCCH--------------
Confidence 986541 14566777665110 00112 333444210
Q ss_pred CCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc--eEEEccccCHHHHHHHHhchHHHHHHHHHHH
Q 005670 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~~~~ 563 (684)
.++ ..+.|.+.+|+. .++.+.+++.+++.+|++..+..
T Consensus 256 ------------------------------~~l--~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-------- 295 (450)
T PRK00149 256 ------------------------------KEL--PGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-------- 295 (450)
T ss_pred ------------------------------HHH--HHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH--------
Confidence 000 013356778884 58999999999999998763211
Q ss_pred HHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 005670 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 564 ~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
..+.++++++++|++. -..++|.|..+|.++...+.
T Consensus 296 -----~~~~l~~e~l~~ia~~---~~~~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 296 -----EGIDLPDEVLEFIAKN---ITSNVRELEGALNRLIAYAS 331 (450)
T ss_pred -----cCCCCCHHHHHHHHcC---cCCCHHHHHHHHHHHHHHHH
Confidence 1578999999999996 45678999999998876554
No 177
>PRK05642 DNA replication initiation factor; Validated
Probab=99.28 E-value=1e-10 Score=120.40 Aligned_cols=168 Identities=20% Similarity=0.273 Sum_probs=110.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
.+++|+||+|||||+|++++++.+ +...+.+++.++... ... +.+.+. ..-+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------~~~-~~~~~~---------~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------GPE-LLDNLE---------QYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------hHH-HHHhhh---------hCCEEEEechhhh
Confidence 578999999999999999998765 456677777665521 011 111121 1248999999987
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
.... ..+..|+.+++.. ..++..+|+|++...
T Consensus 110 ~~~~------------~~~~~Lf~l~n~~--------------------~~~g~~ilits~~~p---------------- 141 (234)
T PRK05642 110 AGKA------------DWEEALFHLFNRL--------------------RDSGRRLLLAASKSP---------------- 141 (234)
T ss_pred cCCh------------HHHHHHHHHHHHH--------------------HhcCCEEEEeCCCCH----------------
Confidence 5431 1456688887610 011123445554211
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccccc--ceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~--d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
.. + ..+.|++++|+ ..++.+.+++.+++.++++..+ .
T Consensus 142 -------------------~~-l----------~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka-----------~ 180 (234)
T PRK05642 142 -------------------RE-L----------PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-----------S 180 (234)
T ss_pred -------------------HH-c----------CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH-----------H
Confidence 00 0 01348889998 4678899999999999986411 1
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.. .+.++++++++|+++ .+..+|.|.++|+++...++.
T Consensus 181 ~~--~~~l~~ev~~~L~~~---~~~d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 181 RR--GLHLTDEVGHFILTR---GTRSMSALFDLLERLDQASLQ 218 (234)
T ss_pred Hc--CCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence 11 478999999999996 466789999999998754443
No 178
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.26 E-value=5.3e-11 Score=137.67 Aligned_cols=207 Identities=19% Similarity=0.225 Sum_probs=129.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccccccccccch-hHHHH-HHHHhcccchHhhhcCcEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQARYVGED-VESIL-YKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~i~~s~l~~s~yvG~~-~~~~l-~~l~~~a~~~v~~a~~gILfIDEIDk 406 (684)
.+|||.|+||||||++|+++++.+.. ||+.+... .++...+|.- ....+ ...+...++.+.+++++|||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~-~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLG-VTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc-cchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 79999999999999999999999853 69988863 3334455532 11111 11112234556678889999999999
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCC
Q 005670 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lg 486 (684)
+.+. +|+.|+.+|+...+.|...|. ... -..++.+|+|.|..+
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~-------~~~-~p~~f~lIAt~np~e--------------- 138 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGI-------SVV-HPAKFALIATYDPAE--------------- 138 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCC-------cee-ecCceEEEEecCCcc---------------
Confidence 9987 999999999855544422221 111 234677888776221
Q ss_pred CCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccC-HHHHHHHHhchHHHHH--------
Q 005670 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT-ENQLVQVLTEPKNALG-------- 557 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLs-eeel~~Il~~~l~~L~-------- 557 (684)
....|++.|++||+..|.+..+. .++..+|++.......
T Consensus 139 --------------------------------~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~ 186 (589)
T TIGR02031 139 --------------------------------GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELE 186 (589)
T ss_pred --------------------------------ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhH
Confidence 00137788999999877776554 4555667665332111
Q ss_pred --HHHHHHHHhcCccccccHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHHH
Q 005670 558 --KQYRKMFQMNGVKLHFTENALRLIAKKAISKNTG-ARGLRSLLENILMDAM 607 (684)
Q Consensus 558 --kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~G-AR~Lr~iIe~~l~~al 607 (684)
.++.......--.+.++++++++|++.....+.. .|....+++-.-..+.
T Consensus 187 ~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aa 239 (589)
T TIGR02031 187 LLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAA 239 (589)
T ss_pred HHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence 1111111122235778999999999987665543 5665555554433333
No 179
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=1.2e-10 Score=133.63 Aligned_cols=176 Identities=15% Similarity=0.257 Sum_probs=112.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 405 (684)
..++|+|++|+|||+|+++|++.+ +..++++++.++.. .+...-...... .|... + ....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al~~~~~~-~f~~~-y----~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSIRDGKGD-SFRRR-Y----REMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHhccHH-HHHHH-h----hcCCEEEEehhc
Confidence 458999999999999999999987 34677888877651 222111000111 11110 0 134799999999
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCC
Q 005670 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~l 485 (684)
.+..+. ..+..|+.+++... + .+.-+|+|++..- .
T Consensus 388 ~l~gke------------~tqeeLF~l~N~l~-------------------e-~gk~IIITSd~~P-~------------ 422 (617)
T PRK14086 388 FLEDKE------------STQEEFFHTFNTLH-------------------N-ANKQIVLSSDRPP-K------------ 422 (617)
T ss_pred cccCCH------------HHHHHHHHHHHHHH-------------------h-cCCCEEEecCCCh-H------------
Confidence 986541 14566777776210 0 1122334555210 0
Q ss_pred CCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccccc--ceEEEccccCHHHHHHHHhchHHHHHHHHHHH
Q 005670 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~--d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~ 563 (684)
++ ..+.+.|.+|| ..++.+.+++.+.+.+|+++.+
T Consensus 423 -------------------------------eL--~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka---------- 459 (617)
T PRK14086 423 -------------------------------QL--VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA---------- 459 (617)
T ss_pred -------------------------------hh--hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH----------
Confidence 00 01345677787 5679999999999999987621
Q ss_pred HHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 005670 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 564 ~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
... .+.++++++++|+.+ + ..+.|+|+.+|.++...+.
T Consensus 460 -~~r--~l~l~~eVi~yLa~r-~--~rnvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 460 -VQE--QLNAPPEVLEFIASR-I--SRNIRELEGALIRVTAFAS 497 (617)
T ss_pred -Hhc--CCCCCHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHH
Confidence 111 578999999999997 3 4467999999999876544
No 180
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.25 E-value=5.8e-11 Score=121.21 Aligned_cols=172 Identities=19% Similarity=0.336 Sum_probs=105.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccc---hhHHHHHHHHhcccchHhhhcCcEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQARYVGE---DVESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~i~~s~l~~s~yvG~---~~~~~l~~l~~~a~~~v~~a~~gILfID 402 (684)
..++|+||+|+|||+|.+++++.+ +..++++++.++.. .+... .....+...+. .--+|+||
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~-~~~~~~~~~~~~~~~~~~~---------~~DlL~iD 104 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR-EFADALRDGEIEEFKDRLR---------SADLLIID 104 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH-HHHHHHHTTSHHHHHHHHC---------TSSEEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH-HHHHHHHcccchhhhhhhh---------cCCEEEEe
Confidence 468999999999999999998876 34677888776651 11110 00111212222 33699999
Q ss_pred cccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc
Q 005670 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 403 EIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
+++.+... +..|..|+.+++... + ++-.+|+|++..
T Consensus 105 Di~~l~~~------------~~~q~~lf~l~n~~~-------------------~-~~k~li~ts~~~------------ 140 (219)
T PF00308_consen 105 DIQFLAGK------------QRTQEELFHLFNRLI-------------------E-SGKQLILTSDRP------------ 140 (219)
T ss_dssp TGGGGTTH------------HHHHHHHHHHHHHHH-------------------H-TTSEEEEEESS-------------
T ss_pred cchhhcCc------------hHHHHHHHHHHHHHH-------------------h-hCCeEEEEeCCC------------
Confidence 99998654 126788888887211 1 112334444311
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccccc--ceEEEccccCHHHHHHHHhchHHHHHHHH
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~--d~iI~f~pLseeel~~Il~~~l~~L~kq~ 560 (684)
|.++ ..+.|.|.+|+ ..++.+.+++.+++.+|+++...
T Consensus 141 --------------------------------P~~l--~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~------ 180 (219)
T PF00308_consen 141 --------------------------------PSEL--SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK------ 180 (219)
T ss_dssp --------------------------------TTTT--TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH------
T ss_pred --------------------------------Cccc--cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH------
Confidence 0000 02457778887 45899999999999999876321
Q ss_pred HHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 005670 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 561 ~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
.+ .+.++++++++|+++ ...+.|+|..+|.++...+
T Consensus 181 -----~~--~~~l~~~v~~~l~~~---~~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 181 -----ER--GIELPEEVIEYLARR---FRRDVRELEGALNRLDAYA 216 (219)
T ss_dssp -----HT--T--S-HHHHHHHHHH---TTSSHHHHHHHHHHHHHHH
T ss_pred -----Hh--CCCCcHHHHHHHHHh---hcCCHHHHHHHHHHHHHHh
Confidence 12 566999999999997 3557899999999877643
No 181
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.25 E-value=2.9e-10 Score=117.16 Aligned_cols=173 Identities=23% Similarity=0.338 Sum_probs=114.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---C
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---~ 355 (684)
++|.|+.|+.|.+-...... + .|..|+||+|+.|||||++++++...+ +
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~----G------------------------~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQ----G------------------------LPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHc----C------------------------CCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 69999999999887753322 1 124899999999999999999999888 4
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
..+|.+...++.. -..+-+.++..+ ..=|||+|++.- + .++.-...|..+|||
T Consensus 81 LRlIev~k~~L~~--------l~~l~~~l~~~~------~kFIlf~DDLsF---e----------~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 81 LRLIEVSKEDLGD--------LPELLDLLRDRP------YKFILFCDDLSF---E----------EGDTEYKALKSVLEG 133 (249)
T ss_pred ceEEEECHHHhcc--------HHHHHHHHhcCC------CCEEEEecCCCC---C----------CCcHHHHHHHHHhcC
Confidence 5678887766651 222333333333 346999998542 1 112257889999997
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccH-HHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dL-e~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
.+- -...|++|.+|+|...| .+...++.. ..-+.+.
T Consensus 134 gle-----------------~~P~NvliyATSNRRHLv~E~~~d~~~--------------------------~~~~eih 170 (249)
T PF05673_consen 134 GLE-----------------ARPDNVLIYATSNRRHLVPESFSDRED--------------------------IQDDEIH 170 (249)
T ss_pred ccc-----------------cCCCcEEEEEecchhhccchhhhhccC--------------------------CCccccC
Confidence 542 23568999999996653 111111100 0001222
Q ss_pred chhhhhhcCccccccccceEEEccccCHHHHHHHHhc
Q 005670 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 515 ~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~ 551 (684)
+.|.++..+ .|.+||..+|.|.+++.++..+|++.
T Consensus 171 ~~d~~eEkl--SLsDRFGL~l~F~~~~q~~YL~IV~~ 205 (249)
T PF05673_consen 171 PSDTIEEKL--SLSDRFGLWLSFYPPDQEEYLAIVRH 205 (249)
T ss_pred cchHHHHHH--hHHHhCCcEEEecCCCHHHHHHHHHH
Confidence 333333333 37889999999999999999999986
No 182
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=2e-10 Score=125.09 Aligned_cols=184 Identities=23% Similarity=0.288 Sum_probs=115.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
.|+||+++++.|..++.... -++.+||+||+|+|||++|+.+|+.+.+
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr-------------------------------l~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK-------------------------------LHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 47999999999999985110 1267999999999999999999999855
Q ss_pred ------CEEEE----eccc---cc---ccc-----------------cccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 357 ------PFVIA----DATT---LT---QAR-----------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 357 ------pfv~i----~~s~---l~---~s~-----------------yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
+.... +|.. +. .+. .++. ..++.+.+............||+|||
T Consensus 73 ~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v---d~iR~l~~~l~~~~~~g~~rVviIDe 149 (351)
T PRK09112 73 PDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV---DEIRRVGHFLSQTSGDGNWRIVIIDP 149 (351)
T ss_pred CccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCH---HHHHHHHHHhhhccccCCceEEEEEc
Confidence 11100 1110 00 000 1111 22333322211111123557999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccC
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
+|.|... .++.||+.||+ ...+++||+.++..+
T Consensus 150 Ad~l~~~--------------aanaLLk~LEE---------------------pp~~~~fiLit~~~~------------ 182 (351)
T PRK09112 150 ADDMNRN--------------AANAILKTLEE---------------------PPARALFILISHSSG------------ 182 (351)
T ss_pred hhhcCHH--------------HHHHHHHHHhc---------------------CCCCceEEEEECChh------------
Confidence 9999877 89999999983 112345555444110
Q ss_pred CCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHH
Q 005670 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 484 ~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~ 563 (684)
.+.|.+++|+. ++.|.+++.+++.+++...
T Consensus 183 --------------------------------------~llptIrSRc~-~i~l~pl~~~~~~~~L~~~----------- 212 (351)
T PRK09112 183 --------------------------------------RLLPTIRSRCQ-PISLKPLDDDELKKALSHL----------- 212 (351)
T ss_pred --------------------------------------hccHHHHhhcc-EEEecCCCHHHHHHHHHHh-----------
Confidence 13467788884 8999999999999988641
Q ss_pred HHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHH
Q 005670 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLL 599 (684)
Q Consensus 564 ~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iI 599 (684)
+....+++++++.+++.+ ++..|...+++
T Consensus 213 ----~~~~~~~~~~~~~i~~~s---~G~pr~Al~ll 241 (351)
T PRK09112 213 ----GSSQGSDGEITEALLQRS---KGSVRKALLLL 241 (351)
T ss_pred ----hcccCCCHHHHHHHHHHc---CCCHHHHHHHH
Confidence 112227788888888753 34455555555
No 183
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.23 E-value=3e-12 Score=119.81 Aligned_cols=111 Identities=28% Similarity=0.323 Sum_probs=66.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc-cccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT-TLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s-~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
|+||+|+||+|||++|+++|+.++..|.++.++ ++.++...|......-...+.-.++.+. ..|+++|||.+.+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh---hceeeecccccCCHH
Confidence 689999999999999999999999999999986 6766666665421111111111222222 369999999999998
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEecc-ceEEEeccCcc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTK-DILFICGGAFV 470 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~-niIfI~tgn~~ 470 (684)
+|++||++|+++.|.+ .| ..+... ...+|+|.|..
T Consensus 78 --------------tQsAlLeam~Er~Vt~--~g---------~~~~lp~pf~ViATqNp~ 113 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTI--DG---------QTYPLPDPFFVIATQNPV 113 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEE--TT---------EEEE--SS-EEEEEE-TT
T ss_pred --------------HHHHHHHHHHcCeEEe--CC---------EEEECCCcEEEEEecCcc
Confidence 9999999998777765 11 123333 37778888843
No 184
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=1.3e-10 Score=130.30 Aligned_cols=177 Identities=19% Similarity=0.298 Sum_probs=108.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 405 (684)
.+++|+||||+|||+|++++++.+ +..++++++.++.. .+...-....+...... + .....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~~~~~~~~f~~~--~---~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMKEGKLNEFREK--Y---RKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHhcccHHHHHHH--H---HhcCCEEEEechh
Confidence 579999999999999999999986 34577777766541 11100000001111100 0 0135799999999
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCC
Q 005670 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~l 485 (684)
.+.... ..+..|+.+++.. .+. +..+|++++.. ...+
T Consensus 205 ~l~~~~------------~~q~elf~~~n~l-------------------~~~-~k~iIitsd~~-p~~l---------- 241 (440)
T PRK14088 205 FLIGKT------------GVQTELFHTFNEL-------------------HDS-GKQIVICSDRE-PQKL---------- 241 (440)
T ss_pred hhcCcH------------HHHHHHHHHHHHH-------------------HHc-CCeEEEECCCC-HHHH----------
Confidence 885431 1456666666510 011 12234444311 1000
Q ss_pred CCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccccc--ceEEEccccCHHHHHHHHhchHHHHHHHHHHH
Q 005670 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~--d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~ 563 (684)
. .+.+.+.+|| ..++.+.+++.+++..|++..+.
T Consensus 242 -------------------------~----------~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~--------- 277 (440)
T PRK14088 242 -------------------------S----------EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE--------- 277 (440)
T ss_pred -------------------------H----------HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH---------
Confidence 0 1234566676 35789999999999999875211
Q ss_pred HHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 005670 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 564 ~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
.. .+.++++++++|+++ -..++|.|+.+|.++...+.
T Consensus 278 --~~--~~~l~~ev~~~Ia~~---~~~~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 278 --IE--HGELPEEVLNFVAEN---VDDNLRRLRGAIIKLLVYKE 314 (440)
T ss_pred --hc--CCCCCHHHHHHHHhc---cccCHHHHHHHHHHHHHHHH
Confidence 11 577899999999996 35578999999999876554
No 185
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=1.3e-10 Score=130.28 Aligned_cols=171 Identities=18% Similarity=0.309 Sum_probs=111.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccc---hhHHHHHHHHhcccchHhhhcCcEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGE---DVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~---~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 404 (684)
.+++|+||+|+|||+|++++++.+ +..++.+++.++.. .+... .....++..+ ....+|+||||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~l~~~~~~~f~~~~---------~~~dvLiIDDi 211 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSAIRSGEMQRFRQFY---------RNVDALFIEDI 211 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHHHhcchHHHHHHHc---------ccCCEEEEcch
Confidence 579999999999999999999987 56777777765541 11100 0001111111 13469999999
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCC
Q 005670 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
+.+.... ..|..|+.+++... + ....+|+|++...
T Consensus 212 q~l~~k~------------~~qeelf~l~N~l~-------------------~-~~k~IIlts~~~p------------- 246 (445)
T PRK12422 212 EVFSGKG------------ATQEEFFHTFNSLH-------------------T-EGKLIVISSTCAP------------- 246 (445)
T ss_pred hhhcCCh------------hhHHHHHHHHHHHH-------------------H-CCCcEEEecCCCH-------------
Confidence 9986531 15666777665110 0 0123455554210
Q ss_pred CCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc--eEEEccccCHHHHHHHHhchHHHHHHHHHH
Q 005670 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (684)
Q Consensus 485 lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~~~ 562 (684)
..+ ..+.+.+.+||. .++.+.+++.+++..|++..+..
T Consensus 247 ----------------------~~l-----------~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~------- 286 (445)
T PRK12422 247 ----------------------QDL-----------KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA------- 286 (445)
T ss_pred ----------------------HHH-----------hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH-------
Confidence 000 023466788884 78999999999999998763221
Q ss_pred HHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 005670 563 MFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 563 ~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
. .+.++++++++|+.. -..++|+|.+.|++++..
T Consensus 287 ----~--~~~l~~evl~~la~~---~~~dir~L~g~l~~l~~~ 320 (445)
T PRK12422 287 ----L--SIRIEETALDFLIEA---LSSNVKSLLHALTLLAKR 320 (445)
T ss_pred ----c--CCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHH
Confidence 1 478999999999995 346789999999998644
No 186
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=3e-10 Score=127.54 Aligned_cols=179 Identities=15% Similarity=0.287 Sum_probs=114.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccchhH--HHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQARYVGEDVE--SILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~i~~s~l~~s~yvG~~~~--~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.+++|+|++|+|||+|++++++.+ +..++++++.++.. .+...-.. ..+...... -....+|+|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~l~~~~~~~~~~~~~------~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDILQKTHKEIEQFKNE------ICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHHhhhHHHHHHHH------hccCCEEEEec
Confidence 578999999999999999999976 34567777766551 11110000 111111111 01346999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccC
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
++.+... +..+..|+.+++... +.. -.+|+|++... +
T Consensus 215 iq~l~~k------------~~~~e~lf~l~N~~~-------------------~~~-k~iIltsd~~P-~---------- 251 (450)
T PRK14087 215 VQFLSYK------------EKTNEIFFTIFNNFI-------------------END-KQLFFSSDKSP-E---------- 251 (450)
T ss_pred cccccCC------------HHHHHHHHHHHHHHH-------------------HcC-CcEEEECCCCH-H----------
Confidence 9998643 125677777776110 111 12455655210 0
Q ss_pred CCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccccc--ceEEEccccCHHHHHHHHhchHHHHHHHHH
Q 005670 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYR 561 (684)
Q Consensus 484 ~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~--d~iI~f~pLseeel~~Il~~~l~~L~kq~~ 561 (684)
.+ ..+.+.+.+|| ..++.+.+++.+++.+|+++.+
T Consensus 252 -------------------------~l----------~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~-------- 288 (450)
T PRK14087 252 -------------------------LL----------NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI-------- 288 (450)
T ss_pred -------------------------HH----------hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH--------
Confidence 00 12446677777 4689999999999999987632
Q ss_pred HHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q 005670 562 KMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 562 ~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
+..|..+.++++++++|+.. ...++|.|.+++.+++..+..
T Consensus 289 ---~~~gl~~~l~~evl~~Ia~~---~~gd~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 289 ---KNQNIKQEVTEEAINFISNY---YSDDVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred ---HhcCCCCCCCHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHhc
Confidence 22344457999999999996 456799999999998855544
No 187
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=5.1e-10 Score=122.58 Aligned_cols=154 Identities=23% Similarity=0.311 Sum_probs=100.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+++++.|..++..... ++.+||+||+|+||+++|.++|+.+.+.
T Consensus 20 ~iiGq~~~~~~L~~~~~~~rl-------------------------------~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGRL-------------------------------HHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred hccChHHHHHHHHHHHHcCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 479999999999998852111 2679999999999999999999998431
Q ss_pred E-------E--------EEecc-----------ccc--cc----------ccccchhHHHHHHHHhcccchHhhhcCcEE
Q 005670 358 F-------V--------IADAT-----------TLT--QA----------RYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 358 f-------v--------~i~~s-----------~l~--~s----------~yvG~~~~~~l~~l~~~a~~~v~~a~~gIL 399 (684)
- . .-+|. ++. +. .-++ -..++++............+.||
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~---VdqiR~l~~~~~~~~~~~~~kVv 145 (365)
T PRK07471 69 PPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVIT---VDEVRELISFFGLTAAEGGWRVV 145 (365)
T ss_pred CCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccccccc---HHHHHHHHHHhCcCcccCCCEEE
Confidence 0 0 00010 000 00 0111 12345544433322233566799
Q ss_pred EEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhc
Q 005670 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (684)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r 479 (684)
+|||+|.+... .++.||+.+|+ ...+++||++++..+
T Consensus 146 iIDead~m~~~--------------aanaLLK~LEe---------------------pp~~~~~IL~t~~~~-------- 182 (365)
T PRK07471 146 IVDTADEMNAN--------------AANALLKVLEE---------------------PPARSLFLLVSHAPA-------- 182 (365)
T ss_pred EEechHhcCHH--------------HHHHHHHHHhc---------------------CCCCeEEEEEECCch--------
Confidence 99999999876 89999999983 112356666655211
Q ss_pred cccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhc
Q 005670 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 480 ~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~ 551 (684)
.+.|.+++|+. .+.|.+++.+++.+++..
T Consensus 183 ------------------------------------------~llpti~SRc~-~i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 183 ------------------------------------------RLLPTIRSRCR-KLRLRPLAPEDVIDALAA 211 (365)
T ss_pred ------------------------------------------hchHHhhccce-EEECCCCCHHHHHHHHHH
Confidence 12355667765 799999999999988865
No 188
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.17 E-value=2.1e-10 Score=113.54 Aligned_cols=142 Identities=24% Similarity=0.341 Sum_probs=94.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEecccccccccccchhHHHHHHHHhc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQARYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~ 386 (684)
+.+||+||+|+|||++|+.+++.+... +..++.. ....+. ..++.++..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~----~~~~~~---~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE----GQSIKV---DQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc----cCcCCH---HHHHHHHHH
Confidence 679999999999999999999998432 1111111 111222 234333333
Q ss_pred ccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEec
Q 005670 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~t 466 (684)
.......+...||+|||+|++... .++.||+.||. ...+++||++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~---------------------~~~~~~~il~ 132 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE---------------------PPPNTLFILI 132 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 222112346689999999999876 89999999982 1123556665
Q ss_pred cCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHH
Q 005670 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~ 546 (684)
++.. ..+.+.+.+|.. ++.|.+++.+++.
T Consensus 133 ~~~~--------------------------------------------------~~l~~~i~sr~~-~~~~~~~~~~~~~ 161 (188)
T TIGR00678 133 TPSP--------------------------------------------------EKLLPTIRSRCQ-VLPFPPLSEEALL 161 (188)
T ss_pred ECCh--------------------------------------------------HhChHHHHhhcE-EeeCCCCCHHHHH
Confidence 5411 013455667774 8999999999998
Q ss_pred HHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHh
Q 005670 547 QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 547 ~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~ 584 (684)
+++... .++++++++++..
T Consensus 162 ~~l~~~-------------------gi~~~~~~~i~~~ 180 (188)
T TIGR00678 162 QWLIRQ-------------------GISEEAAELLLAL 180 (188)
T ss_pred HHHHHc-------------------CCCHHHHHHHHHH
Confidence 887541 2788999999986
No 189
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.15 E-value=8.6e-10 Score=124.95 Aligned_cols=229 Identities=16% Similarity=0.238 Sum_probs=128.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC--EEEEeccccc-------------ccccc----cchhHHHHHHHHhcccchH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLT-------------QARYV----GEDVESILYKLLTVSDYNV 391 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p--fv~i~~s~l~-------------~s~yv----G~~~~~~l~~l~~~a~~~v 391 (684)
.+++|+||||+|||++++.++..+... =..+.++.+. ..-|. ..+....+..-....++.+
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l 290 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI 290 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHh
Confidence 789999999999999999999887311 0112222111 00010 0111111111011234667
Q ss_pred hhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCccc
Q 005670 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (684)
Q Consensus 392 ~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~d 471 (684)
..+++|||||||++.+.+. +|+.|++.||...+.|...+.. .....++.+|+|+|..
T Consensus 291 ~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~--------~~~pa~f~lIAa~NP~- 347 (506)
T PRK09862 291 SLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAK--------ITYPARFQLVAAMNPS- 347 (506)
T ss_pred hhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcc--------eeccCCEEEEEeecCc-
Confidence 8899999999999999876 9999999998655554332211 2234578999998832
Q ss_pred HHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHH----
Q 005670 472 IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ---- 547 (684)
Q Consensus 472 Le~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~---- 547 (684)
..|+..... . .+.+.....++.+ +.+++++|||..+.+++++.+++.+
T Consensus 348 ------------pcG~~~~~~-c-----~c~~~~~~~Y~~~----------ls~plLDRfdL~v~v~~~~~~~l~~~~~~ 399 (506)
T PRK09862 348 ------------PTGHYQGNH-N-----RCTPEQTLRYLNR----------LSGPFLDRFDLSLEIPLPPPGILSKTVVP 399 (506)
T ss_pred ------------cceecCCCC-C-----CcCHHHHHHHHhh----------CCHhHHhhccEEEEeCCCCHHHHhcccCC
Confidence 234322111 1 1223333344443 6689999999999999886554432
Q ss_pred ------HHhchHHHHHHHHH--HHHHhc--C----ccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 005670 548 ------VLTEPKNALGKQYR--KMFQMN--G----VKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 548 ------Il~~~l~~L~kq~~--~~~~~~--g----i~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
|.++....-..+.. ..+... + ..+.+++++.+.+.......+..+|...++++ +..+++++..
T Consensus 400 ~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLr--vARTiADL~g 476 (506)
T PRK09862 400 GESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK--VARTIADIDQ 476 (506)
T ss_pred CCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHcC
Confidence 11111101011101 001000 0 02456777777776654456677999999987 4445555543
No 190
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=5.6e-10 Score=119.49 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=72.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+.+++.+...+.... -++.+||+||+|+|||++|+++|+.+.+.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-------------------------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-------------------------------FSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 37999999999998884110 12678999999999999999999987432
Q ss_pred --------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHH
Q 005670 358 --------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 358 --------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+..+... +....+ -..++++..........+...|++|||+|++... .+|+|
T Consensus 54 ~~~~~h~D~~~~~~~---~~~~i~---v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naL 113 (313)
T PRK05564 54 SQQREYVDIIEFKPI---NKKSIG---VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAF 113 (313)
T ss_pred CCCCCCCCeEEeccc---cCCCCC---HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHH
Confidence 2222111 111122 1235555542211112346789999999999876 89999
Q ss_pred HHHHcC
Q 005670 430 LKMLEG 435 (684)
Q Consensus 430 L~~LEg 435 (684)
|+.||+
T Consensus 114 LK~LEe 119 (313)
T PRK05564 114 LKTIEE 119 (313)
T ss_pred HHHhcC
Confidence 999993
No 191
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.4e-09 Score=116.98 Aligned_cols=112 Identities=22% Similarity=0.281 Sum_probs=71.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+||+++++.|..++.... -++.+||+||+|+||+++|+++|+.+.+.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-------------------------------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-------------------------------IAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 48999999999999985211 13799999999999999999999998432
Q ss_pred ------------------EEEEeccccccc--------cccc-------chhHHHHHHHHhcccchHhhhcCcEEEEecc
Q 005670 358 ------------------FVIADATTLTQA--------RYVG-------EDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 358 ------------------fv~i~~s~l~~s--------~yvG-------~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 404 (684)
+..+......+. ...| .-.-..++++.+........+...|++||++
T Consensus 54 ~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~a 133 (314)
T PRK07399 54 GSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDA 133 (314)
T ss_pred CCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEch
Confidence 111111100000 0000 0000123444322221112356789999999
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|+|... .+|+||+.||
T Consensus 134 e~m~~~--------------aaNaLLK~LE 149 (314)
T PRK07399 134 ETMNEA--------------AANALLKTLE 149 (314)
T ss_pred hhcCHH--------------HHHHHHHHHh
Confidence 999876 8999999999
No 192
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=3.2e-10 Score=118.12 Aligned_cols=199 Identities=21% Similarity=0.294 Sum_probs=123.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH------hCCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY------VNVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~------l~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILf 400 (684)
.++||.||+|.||+.||+.|-+. +..+|+.+||..+.. +.++|+-. ..+...-....+.+..+.+|.+|
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvk-gaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVK-GAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhc-cccccchhhhhhhhccCCCceEe
Confidence 68999999999999999988654 357899999998762 22334331 11222222334556678899999
Q ss_pred EecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcc
Q 005670 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 401 IDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~ 480 (684)
+|||..+... -|..||+.+|++.+. .-+..+.+..|+.-+ +|+..||...+.+++
T Consensus 288 ldeigelgad--------------eqamllkaieekrf~-------pfgsdr~v~sdfqli----agtvrdlrq~vaeg~ 342 (531)
T COG4650 288 LDEIGELGAD--------------EQAMLLKAIEEKRFY-------PFGSDRQVSSDFQLI----AGTVRDLRQLVAEGK 342 (531)
T ss_pred hHhhhhcCcc--------------HHHHHHHHHHhhccC-------CCCCccccccchHHh----hhhHHHHHHHHhccc
Confidence 9999999776 789999999843322 112223333444333 677778877777776
Q ss_pred ccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceE-EEccccCH--HHHHHHHhchHHHHH
Q 005670 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEPKNALG 557 (684)
Q Consensus 481 ~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLse--eel~~Il~~~l~~L~ 557 (684)
++.++ ..||+.. +.++.|.. |+++--+..++..
T Consensus 343 fredl------------------------------------------~arinlwtf~lpgl~qr~ediepnldyeler-- 378 (531)
T COG4650 343 FREDL------------------------------------------YARINLWTFTLPGLRQRQEDIEPNLDYELER-- 378 (531)
T ss_pred hHHHH------------------------------------------HHhhheeeeeccccccCccccCCCccHHHHH--
Confidence 55443 3444322 33333322 3332222221111
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHH
Q 005670 558 KQYRKMFQMNGVKLHFTENALRLIAKKAI----SKNTGARGLRSLLENILM 604 (684)
Q Consensus 558 kq~~~~~~~~gi~l~~s~eAl~~La~~a~----~~~~GAR~Lr~iIe~~l~ 604 (684)
.-...|-.+.|..+|.+.....+. .|.++.|+|-..|.++..
T Consensus 379 -----ha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmat 424 (531)
T COG4650 379 -----HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 (531)
T ss_pred -----HHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHH
Confidence 122346678888888877666543 477888999988877544
No 193
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.11 E-value=3e-10 Score=131.90 Aligned_cols=48 Identities=35% Similarity=0.601 Sum_probs=40.4
Q ss_pred hhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005670 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.+.+.|+||+++++.|..++.. ..+++|+||||||||++|+++++.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------------------------~~~~l~~G~~G~GKttla~~l~~~ 73 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------------------------RRHVMMIGSPGTGKSMLAKAMAEL 73 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------------------------CCeEEEECCCCCcHHHHHHHHHHH
Confidence 4455689999999999887741 158999999999999999999998
Q ss_pred hC
Q 005670 354 VN 355 (684)
Q Consensus 354 l~ 355 (684)
+.
T Consensus 74 l~ 75 (637)
T PRK13765 74 LP 75 (637)
T ss_pred cC
Confidence 74
No 194
>PRK06620 hypothetical protein; Validated
Probab=99.11 E-value=2.4e-09 Score=109.06 Aligned_cols=63 Identities=11% Similarity=0.213 Sum_probs=49.2
Q ss_pred cccccccc--eEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 005670 525 PEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENI 602 (684)
Q Consensus 525 PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~ 602 (684)
|+|++|+. .++.+.+++.+++..++++.+. .. .+.++++++++|+++ .+.++|.|.++|+++
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~-----------~~--~l~l~~ev~~~L~~~---~~~d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFS-----------IS--SVTISRQIIDFLLVN---LPREYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHH---ccCCHHHHHHHHHHH
Confidence 56777774 4799999999998888765221 11 578999999999997 366789999999985
Q ss_pred H
Q 005670 603 L 603 (684)
Q Consensus 603 l 603 (684)
-
T Consensus 194 ~ 194 (214)
T PRK06620 194 N 194 (214)
T ss_pred H
Confidence 4
No 195
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.09 E-value=3.2e-11 Score=113.86 Aligned_cols=70 Identities=37% Similarity=0.753 Sum_probs=54.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
.+|||+|++||||+++|++|+.... .+|+.++|..+. .+++. .+.+++|||+|||.+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~-------~a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLE-------QAKGGTLYLKNIDRL 81 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHH-------HCTTSEEEEECGCCS
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHH-------HcCCCEEEECChHHC
Confidence 7899999999999999999999885 367777776643 11222 236799999999999
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHc
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
... .|..|+..|+
T Consensus 82 ~~~--------------~Q~~L~~~l~ 94 (138)
T PF14532_consen 82 SPE--------------AQRRLLDLLK 94 (138)
T ss_dssp -HH--------------HHHHHHHHHH
T ss_pred CHH--------------HHHHHHHHHH
Confidence 987 8999999997
No 196
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=1.2e-09 Score=118.00 Aligned_cols=106 Identities=20% Similarity=0.223 Sum_probs=69.7
Q ss_pred cccC-hHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 278 FVIG-QERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 278 ~VvG-Qe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
.|+| |+.+++.|...+.... -++.+||+||+|+||+++|+++|+.+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-------------------------------l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-------------------------------LSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3566 9999999998884110 1367899999999999999999999843
Q ss_pred C------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccc
Q 005670 357 P------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 357 p------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~ 412 (684)
+ +..+.. +....+ -..++++.+........+...|++|||+|.+...
T Consensus 55 ~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~----~~~~i~---id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~-- 125 (329)
T PRK08058 55 LERNGVEPCGTCTNCKRIDSGNHPDVHLVAP----DGQSIK---KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS-- 125 (329)
T ss_pred CCCCCCCCCCcCHHHHHHhcCCCCCEEEecc----ccccCC---HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH--
Confidence 2 111110 001111 1234444432221111245689999999999877
Q ss_pred cccCCCCCcchHHHHHHHHHHcC
Q 005670 413 SLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+||+.||+
T Consensus 126 ------------a~NaLLK~LEE 136 (329)
T PRK08058 126 ------------AANSLLKFLEE 136 (329)
T ss_pred ------------HHHHHHHHhcC
Confidence 89999999993
No 197
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.9e-09 Score=116.62 Aligned_cols=210 Identities=21% Similarity=0.214 Sum_probs=132.7
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (684)
+.+.++.++.|...+...+. .. .|.+++++|+||||||.+++.+.+++..+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~----------------~~------------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALR----------------GE------------RPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc----------------CC------------CCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 67888888988888752222 01 13689999999999999999999999543
Q ss_pred ----EEEEeccccccc--------------ccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCC
Q 005670 358 ----FVIADATTLTQA--------------RYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 358 ----fv~i~~s~l~~s--------------~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d 419 (684)
++++||..+..+ -..|......+..+++.-. .....-||+|||+|.|....+
T Consensus 71 ~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~---~~~~~~IvvLDEid~L~~~~~------- 140 (366)
T COG1474 71 ANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS---KKGKTVIVILDEVDALVDKDG------- 140 (366)
T ss_pred ccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH---hcCCeEEEEEcchhhhccccc-------
Confidence 899999876521 1112111111111111110 123457999999999987611
Q ss_pred CcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCC
Q 005670 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~ 499 (684)
.++-.|+++.+. . ..++.+|+.+|..++.+.+
T Consensus 141 ----~~LY~L~r~~~~--------------------~-~~~v~vi~i~n~~~~~~~l----------------------- 172 (366)
T COG1474 141 ----EVLYSLLRAPGE--------------------N-KVKVSIIAVSNDDKFLDYL----------------------- 172 (366)
T ss_pred ----hHHHHHHhhccc--------------------c-ceeEEEEEEeccHHHHHHh-----------------------
Confidence 133334333330 0 3357777777743322222
Q ss_pred CchhhhhHHHHhhccchhhhhhcCccccccccc-eEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHH
Q 005670 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENAL 578 (684)
Q Consensus 500 ~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d-~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl 578 (684)
.|-+.+++. ..|.|+|++.+|+..|+..-.+.- | ..-.++++++
T Consensus 173 ------------------------d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~-------~----~~~~~~~~vl 217 (366)
T COG1474 173 ------------------------DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG-------F----SAGVIDDDVL 217 (366)
T ss_pred ------------------------hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh-------c----cCCCcCccHH
Confidence 233334442 248999999999999987622111 1 1456899999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHhc
Q 005670 579 RLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 579 ~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
+.++..+....+.||-.-.+++.+..-+-.+
T Consensus 218 ~lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 218 KLIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 9999987777778998888888877666433
No 198
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.08 E-value=6.7e-10 Score=101.43 Aligned_cols=86 Identities=36% Similarity=0.616 Sum_probs=57.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHH-HHHHhcccchHhhhcCcEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESIL-YKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l-~~l~~~a~~~v~~a~~gILfIDEIDk 406 (684)
.+++++||||||||++++.+++.+ +.+++.+++.+... ........... .... ........+++|+|||++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE-GLVVAELFGHFLVRLL---FELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh-hhHHHHHhhhhhHhHH---HHhhccCCCeEEEEeChhh
Confidence 689999999999999999999998 78899999877652 11111100000 0000 0111124678999999999
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHc
Q 005670 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+... ....++..++
T Consensus 96 ~~~~--------------~~~~~~~~i~ 109 (151)
T cd00009 96 LSRG--------------AQNALLRVLE 109 (151)
T ss_pred hhHH--------------HHHHHHHHHH
Confidence 8554 5667777776
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.08 E-value=1.9e-09 Score=105.02 Aligned_cols=105 Identities=29% Similarity=0.444 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC---
Q 005670 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP--- 357 (684)
Q Consensus 281 GQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p--- 357 (684)
||+++++.|..++..... ++.+||+||+|+||+++|+++|+.+...
T Consensus 1 gq~~~~~~L~~~~~~~~l-------------------------------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL-------------------------------PHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---------------------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred CcHHHHHHHHHHHHcCCc-------------------------------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 899999999988852211 3678999999999999999999998321
Q ss_pred --------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCC
Q 005670 358 --------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 358 --------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~ 417 (684)
++.++..... ...+ -..++.+..........+...|++|||+|+|...
T Consensus 50 ~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~--~~i~---i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------- 117 (162)
T PF13177_consen 50 EDPCGECRSCRRIEEGNHPDFIIIKPDKKK--KSIK---IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------- 117 (162)
T ss_dssp TT--SSSHHHHHHHTT-CTTEEEEETTTSS--SSBS---HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-------
T ss_pred CCCCCCCHHHHHHHhccCcceEEEeccccc--chhh---HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-------
Confidence 2222222110 0122 2345555544333223356789999999999987
Q ss_pred CCCcchHHHHHHHHHHcC
Q 005670 418 RDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg 435 (684)
++|+||+.||+
T Consensus 118 -------a~NaLLK~LEe 128 (162)
T PF13177_consen 118 -------AQNALLKTLEE 128 (162)
T ss_dssp -------HHHHHHHHHHS
T ss_pred -------HHHHHHHHhcC
Confidence 99999999993
No 200
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.07 E-value=9.6e-10 Score=116.52 Aligned_cols=99 Identities=29% Similarity=0.348 Sum_probs=68.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC------------------------CCEEEEecccccccccccchhHHHHHHHHhc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN------------------------VPFVIADATTLTQARYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~------------------------~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~ 386 (684)
+.+||+||||+|||++|.++|+.+. ..++.++.++..... +. ...++++...
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i~---~~~vr~~~~~ 100 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-II---VEQVRELAEF 100 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-ch---HHHHHHHHHH
Confidence 4599999999999999999999996 245666665543111 11 2334444433
Q ss_pred ccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEec
Q 005670 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~t 466 (684)
...........||+|||+|.|... .+++|++.||. ...++.||++
T Consensus 101 ~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lEe---------------------p~~~~~~il~ 145 (325)
T COG0470 101 LSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLEE---------------------PPKNTRFILI 145 (325)
T ss_pred hccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhcc---------------------CCCCeEEEEE
Confidence 222111245689999999999886 99999999982 2346888888
Q ss_pred cC
Q 005670 467 GA 468 (684)
Q Consensus 467 gn 468 (684)
+|
T Consensus 146 ~n 147 (325)
T COG0470 146 TN 147 (325)
T ss_pred cC
Confidence 77
No 201
>PRK04132 replication factor C small subunit; Provisional
Probab=99.07 E-value=1.1e-09 Score=129.95 Aligned_cols=168 Identities=21% Similarity=0.272 Sum_probs=118.8
Q ss_pred cccccceEEEEc--cCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccchhHHHHHHHHhcccc--hHhhhcC
Q 005670 326 VELEKSNILLMG--PTGSGKTLLAKTLARYV-----NVPFVIADATTLTQARYVGEDVESILYKLLTVSDY--NVAAAQQ 396 (684)
Q Consensus 326 v~~~~~~vLL~G--PPGTGKT~LAraLA~~l-----~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~--~v~~a~~ 396 (684)
+..|.-+-+..| |.+.|||++|+++|+.+ +.+++.+|+++.. |. ..+++.++.... .+...+.
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----gi---d~IR~iIk~~a~~~~~~~~~~ 631 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-----GI---NVIREKVKEFARTKPIGGASF 631 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----cH---HHHHHHHHHHHhcCCcCCCCC
Confidence 334556667789 99999999999999998 4579999998743 21 234444332110 0111134
Q ss_pred cEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHH
Q 005670 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i 476 (684)
.|+||||+|.|... .|++|++.||. ...++.||+++|...
T Consensus 632 KVvIIDEaD~Lt~~--------------AQnALLk~lEe---------------------p~~~~~FILi~N~~~----- 671 (846)
T PRK04132 632 KIIFLDEADALTQD--------------AQQALRRTMEM---------------------FSSNVRFILSCNYSS----- 671 (846)
T ss_pred EEEEEECcccCCHH--------------HHHHHHHHhhC---------------------CCCCeEEEEEeCChh-----
Confidence 69999999999876 89999999992 123578888877211
Q ss_pred HhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHH
Q 005670 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (684)
Q Consensus 477 ~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L 556 (684)
.+.|++++|+. ++.|.+++.+++..++...+.
T Consensus 672 ---------------------------------------------kIi~tIrSRC~-~i~F~~ls~~~i~~~L~~I~~-- 703 (846)
T PRK04132 672 ---------------------------------------------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAE-- 703 (846)
T ss_pred ---------------------------------------------hCchHHhhhce-EEeCCCCCHHHHHHHHHHHHH--
Confidence 23466778875 899999999999888765221
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 557 GKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 557 ~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
.. .+.+++++++.|+.. .+++.|..-+.+|.+.
T Consensus 704 ---------~E--gi~i~~e~L~~Ia~~---s~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 704 ---------NE--GLELTEEGLQAILYI---AEGDMRRAINILQAAA 736 (846)
T ss_pred ---------hc--CCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHH
Confidence 12 466899999999986 4666788888888654
No 202
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.05 E-value=1e-09 Score=127.27 Aligned_cols=253 Identities=17% Similarity=0.218 Sum_probs=145.5
Q ss_pred hhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005670 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.+-..|.|.+.+|+.+.-.+.....+.... ..--...-|+||.|.||||||.|.+.+++.
T Consensus 283 SiaPsIyG~e~VKkAilLqLfgGv~k~~~~--------------------g~~iRGDInILLvGDPgtaKSqlLk~v~~~ 342 (682)
T COG1241 283 SIAPSIYGHEDVKKAILLQLFGGVKKNLPD--------------------GTRIRGDIHILLVGDPGTAKSQLLKYVAKL 342 (682)
T ss_pred HhcccccCcHHHHHHHHHHhcCCCcccCCC--------------------CcccccceeEEEcCCCchhHHHHHHHHHhh
Confidence 334458999999998887775222211100 000111279999999999999999999998
Q ss_pred hCCC-EEEEecccccccccccchhHH-HHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHH
Q 005670 354 VNVP-FVIADATTLTQARYVGEDVES-ILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 354 l~~p-fv~i~~s~l~~s~yvG~~~~~-~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
+... +....++.- .++...-... ...+ +.-..|.+..|.+||..|||+|+|... ...+|..
T Consensus 343 aPr~vytsgkgss~--~GLTAav~rd~~tge-~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aihE 405 (682)
T COG1241 343 APRGVYTSGKGSSA--AGLTAAVVRDKVTGE-WVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIHE 405 (682)
T ss_pred CCceEEEccccccc--cCceeEEEEccCCCe-EEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHHH
Confidence 8543 222222221 1111110000 0011 111223345678999999999999876 7899999
Q ss_pred HHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHh
Q 005670 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~ 511 (684)
.||...++|..-|-. ..-...+-+++++|... ++++. ...+.+
T Consensus 406 aMEQQtIsIaKAGI~--------atLnARcsvLAAaNP~~-------Gryd~----------------------~~~~~e 448 (682)
T COG1241 406 AMEQQTISIAKAGIT--------ATLNARCSVLAAANPKF-------GRYDP----------------------KKTVAE 448 (682)
T ss_pred HHHhcEeeeccccee--------eecchhhhhhhhhCCCC-------CcCCC----------------------CCCHHH
Confidence 999777766333311 11223455666766321 11111 011222
Q ss_pred hccchhhhhhcCccccccccceEEEc-cccCHHHHHHHHhchHHHH------------------------HHHHHHHHHh
Q 005670 512 TVESSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQVLTEPKNAL------------------------GKQYRKMFQM 566 (684)
Q Consensus 512 ~v~~~dll~~~f~PeLl~R~d~iI~f-~pLseeel~~Il~~~l~~L------------------------~kq~~~~~~~ 566 (684)
.+ .|+++|++|||.++.+ ..++++.-..|..+.+... .++|-.. +.
T Consensus 449 nI--------~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~Y-AR 519 (682)
T COG1241 449 NI--------NLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISY-AR 519 (682)
T ss_pred hc--------CCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHH-Hh
Confidence 22 3789999999988554 4444443344444433222 4555443 23
Q ss_pred cCccccccHHHHHHHHHhcCC--------------CCCCHHHHHHHHHHHHHHHHhcC
Q 005670 567 NGVKLHFTENALRLIAKKAIS--------------KNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 567 ~gi~l~~s~eAl~~La~~a~~--------------~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
..+...++++|.+.|.++ |. -+.-+|.|+++|+-.-..|-.++
T Consensus 520 ~~v~P~lt~ea~e~l~~~-Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rL 576 (682)
T COG1241 520 KNVTPVLTEEAREELEDY-YVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRL 576 (682)
T ss_pred ccCCcccCHHHHHHHHHH-HHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhc
Confidence 345578999999999886 41 12458999999986555544433
No 203
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.05 E-value=3.6e-09 Score=110.38 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=78.5
Q ss_pred hcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHH
Q 005670 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIE 473 (684)
Q Consensus 394 a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe 473 (684)
--||||||||++.+.-+ +...|.+.||..+ -.++|+++|..-
T Consensus 295 lvPGVLFIDEVhMLDiE--------------cFTyL~kalES~i----------------------aPivifAsNrG~-- 336 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIE--------------CFTYLHKALESPI----------------------APIVIFASNRGM-- 336 (456)
T ss_pred hcCcceEeeehhhhhhH--------------HHHHHHHHhcCCC----------------------CceEEEecCCcc--
Confidence 34799999999999776 8899999998311 145677777320
Q ss_pred HHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhh-hhhcCccccccccceEEEccccCHHHHHHHHhch
Q 005670 474 KTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL-IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 474 ~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dl-l~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~ 552 (684)
+ +.+.. +|+ --.+.+|++++|+- +|.-.+++++++++|++..
T Consensus 337 ---------~------~irGt---------------------~d~~sPhGip~dllDRl~-Iirt~~y~~~e~r~Ii~~R 379 (456)
T KOG1942|consen 337 ---------C------TIRGT---------------------EDILSPHGIPPDLLDRLL-IIRTLPYDEEEIRQIIKIR 379 (456)
T ss_pred ---------e------eecCC---------------------cCCCCCCCCCHHHhhhee-EEeeccCCHHHHHHHHHHH
Confidence 0 00000 111 12467899999997 7888899999999998751
Q ss_pred HHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 005670 553 KNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLEN 601 (684)
Q Consensus 553 l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~ 601 (684)
.+. -.+.+++++++.|+..+ .-+.||-.++-
T Consensus 380 -----------a~~--E~l~~~e~a~~~l~~~g-----t~tsLRy~vqL 410 (456)
T KOG1942|consen 380 -----------AQV--EGLQVEEEALDLLAEIG-----TSTSLRYAVQL 410 (456)
T ss_pred -----------Hhh--hcceecHHHHHHHHhhc-----cchhHHHHHHh
Confidence 111 16789999999999963 13567766663
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.03 E-value=4.9e-09 Score=113.86 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=46.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
.|+|+++++..+...+..... +.. ..+..++|+||||+|||++|++|++.++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~----g~~----------------------~~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQ----GLE----------------------ERKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHh----cCC----------------------CCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 589999999999988752211 100 01267899999999999999999999965
Q ss_pred ------CEEEEec
Q 005670 357 ------PFVIADA 363 (684)
Q Consensus 357 ------pfv~i~~ 363 (684)
+++.+..
T Consensus 106 s~t~eG~~Y~~~~ 118 (361)
T smart00763 106 SKTPEGRRYTFKW 118 (361)
T ss_pred cccccCceEEEEe
Confidence 7887766
No 205
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.02 E-value=7e-09 Score=118.76 Aligned_cols=87 Identities=24% Similarity=0.317 Sum_probs=66.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
..-+||+||||-|||+||+.+|+..|..++.+|+++-.. +..+...+..++......-+..+|..|+|||||-..+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~ 401 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR 401 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc----HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH
Confidence 467789999999999999999999999999999997542 2233444444444433222335788999999999876
Q ss_pred ccccccCCCCCcchHHHHHHHHHHc
Q 005670 410 KAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
. ..+.|+.++.
T Consensus 402 ~--------------~Vdvilslv~ 412 (877)
T KOG1969|consen 402 A--------------AVDVILSLVK 412 (877)
T ss_pred H--------------HHHHHHHHHH
Confidence 5 7888999886
No 206
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.00 E-value=3.8e-09 Score=119.26 Aligned_cols=251 Identities=20% Similarity=0.302 Sum_probs=146.0
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (684)
|...|-..|.|.+.+|.-|.-.+...-.+ .++ .+..+ ...-||+++|.|||||+-+.++.
T Consensus 339 lv~Sl~PsIyGhe~VK~GilL~LfGGv~K---------~a~----------eg~~l-RGDinv~iVGDPgt~KSQfLk~v 398 (764)
T KOG0480|consen 339 LVNSLFPSIYGHELVKAGILLSLFGGVHK---------SAG----------EGTSL-RGDINVCIVGDPGTGKSQFLKAV 398 (764)
T ss_pred HHHhhCccccchHHHHhhHHHHHhCCccc---------cCC----------CCccc-cCCceEEEeCCCCccHHHHHHHH
Confidence 44455556899999999887766422111 000 00011 11269999999999999999999
Q ss_pred HHHhCCCEE-EEeccc---ccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 351 ARYVNVPFV-IADATT---LTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 351 A~~l~~pfv-~i~~s~---l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
+..+.+..+ .-+++. |+ +..+-.+ + ..-|.-..+.+-.+.+||-.|||+|||..+ -|
T Consensus 399 ~~fsPR~vYtsGkaSSaAGLT-aaVvkD~-e---sgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dq 459 (764)
T KOG0480|consen 399 CAFSPRSVYTSGKASSAAGLT-AAVVKDE-E---SGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQ 459 (764)
T ss_pred hccCCcceEecCcccccccce-EEEEecC-C---CCceeeecCcEEEccCceEEechhcccChH--------------hH
Confidence 998855433 222222 22 1111111 0 000001112233568899999999999765 58
Q ss_pred HHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhh
Q 005670 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~ 506 (684)
.+|++.||...+.|..-|-.. +++.+ .-+|+++|..+ ++. ...
T Consensus 460 vAihEAMEQQtISIaKAGv~a-------TLnAR-tSIlAAANPv~-------GhY----------------------dR~ 502 (764)
T KOG0480|consen 460 VAIHEAMEQQTISIAKAGVVA-------TLNAR-TSILAAANPVG-------GHY----------------------DRK 502 (764)
T ss_pred HHHHHHHHhheehheecceEE-------eecch-hhhhhhcCCcC-------Ccc----------------------ccc
Confidence 899999997777764433221 23333 44666777442 110 012
Q ss_pred HHHHhhccchhhhhhcCccccccccceE-EEccccCHHHHHHHHhchHH-----------------HHHHHHHHHHHhcC
Q 005670 507 SSLMETVESSDLIAYGLIPEFVGRFPVL-VSLLALTENQLVQVLTEPKN-----------------ALGKQYRKMFQMNG 568 (684)
Q Consensus 507 ~~Ll~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLseeel~~Il~~~l~-----------------~L~kq~~~~~~~~g 568 (684)
.++.+.++ +.+++++|||.+ |.++..++..=..|.++.++ +..++|-... +.
T Consensus 503 ktl~eNi~--------msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yA--R~ 572 (764)
T KOG0480|consen 503 KTLRENIN--------MSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYA--RN 572 (764)
T ss_pred cchhhhcC--------CCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHH--Hh
Confidence 23444443 789999999987 56666666443444433221 2223343322 25
Q ss_pred ccccccHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHhcC
Q 005670 569 VKLHFTENALRLIAKKAI--------------SKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 569 i~l~~s~eAl~~La~~a~--------------~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
+.-.++.+|.+.|.++ | +|...+|.|+++|+ |..++++.
T Consensus 573 ~~P~ls~ea~~~lve~-Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsEA~Ar~ 625 (764)
T KOG0480|consen 573 FKPKLSKEASEMLVEK-YKGLRQRDAQGNNRSSYRITVRQLESLIR--LSEARARV 625 (764)
T ss_pred cCccccHHHHHHHHHH-HHHHHHhhccccCcccccccHHHHHHHHH--HHHHHHhh
Confidence 5677888888888775 3 45778999999996 44454443
No 207
>PRK09087 hypothetical protein; Validated
Probab=98.99 E-value=3.7e-09 Score=108.50 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=52.8
Q ss_pred ccccccccc--eEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 005670 524 IPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLEN 601 (684)
Q Consensus 524 ~PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~ 601 (684)
.|++++|+. .++.+.+++.+++.+|+++.+.. . .+.++++++++|+++. ....|+|..+|++
T Consensus 135 ~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-----------~--~~~l~~ev~~~La~~~---~r~~~~l~~~l~~ 198 (226)
T PRK09087 135 LPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD-----------R--QLYVDPHVVYYLVSRM---ERSLFAAQTIVDR 198 (226)
T ss_pred cccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHh---hhhHHHHHHHHHH
Confidence 477888884 68999999999999998763222 1 5789999999999973 3556888888877
Q ss_pred HHHHHHh
Q 005670 602 ILMDAMY 608 (684)
Q Consensus 602 ~l~~al~ 608 (684)
+-..++.
T Consensus 199 L~~~~~~ 205 (226)
T PRK09087 199 LDRLALE 205 (226)
T ss_pred HHHHHHH
Confidence 7655544
No 208
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.98 E-value=2.7e-09 Score=116.69 Aligned_cols=209 Identities=22% Similarity=0.300 Sum_probs=127.3
Q ss_pred hhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005670 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.+...|+|||..|..|.-...++ ...++|+.|+.|||||+++|+||..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P--------------------------------~iggvLI~G~kGtaKSt~~Rala~L 61 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP--------------------------------QIGGALIAGEKGTAKSTLARALADL 61 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc--------------------------------ccceeEEecCCCccHHHHHHHHHHh
Confidence 34445899999998877544311 1279999999999999999999999
Q ss_pred hCC-CEEEEec----cc----------------------------cc-------ccccccc-hhHHHHHH-HHhcccchH
Q 005670 354 VNV-PFVIADA----TT----------------------------LT-------QARYVGE-DVESILYK-LLTVSDYNV 391 (684)
Q Consensus 354 l~~-pfv~i~~----s~----------------------------l~-------~s~yvG~-~~~~~l~~-l~~~a~~~v 391 (684)
|.- ..+. .| .- +. +...+|. +..+.+.. .-.-.++.+
T Consensus 62 Lp~~~~V~-gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlL 140 (423)
T COG1239 62 LPEIEVVI-GCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLL 140 (423)
T ss_pred CCccceec-CCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcch
Confidence 931 1111 11 00 00 0112222 11111111 011135677
Q ss_pred hhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCccc
Q 005670 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (684)
Q Consensus 392 ~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~d 471 (684)
.+++.|||++||+..|... +++.||.+++.....|..+|... --..++++|.|.|...
T Consensus 141 a~AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi--------~hpa~fvligTmNPEe 198 (423)
T COG1239 141 ARANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISI--------RHPARFLLIGTMNPEE 198 (423)
T ss_pred hhccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceee--------ccCccEEEEeecCccc
Confidence 8999999999999999877 99999999984322221233111 1234688999888320
Q ss_pred HHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCH-HHHHHHHh
Q 005670 472 IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLT 550 (684)
Q Consensus 472 Le~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLse-eel~~Il~ 550 (684)
-.++|.|++||...|...+.+. ++..+|+.
T Consensus 199 -------------------------------------------------GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 199 -------------------------------------------------GELRPQLLDRFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred -------------------------------------------------cccchhhHhhhcceeeccCCCCHHHHHHHHH
Confidence 1267999999998887766654 66677776
Q ss_pred chHH------HHHHHHHHH--------HHh-cC-ccccccHHHHHHHHHhcC
Q 005670 551 EPKN------ALGKQYRKM--------FQM-NG-VKLHFTENALRLIAKKAI 586 (684)
Q Consensus 551 ~~l~------~L~kq~~~~--------~~~-~g-i~l~~s~eAl~~La~~a~ 586 (684)
+... .+.++|... +.. .+ ..+.+++++..+++....
T Consensus 230 r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~ 281 (423)
T COG1239 230 RRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCA 281 (423)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHH
Confidence 6443 133333221 111 11 145678888888887643
No 209
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.98 E-value=8.3e-09 Score=105.43 Aligned_cols=173 Identities=21% Similarity=0.363 Sum_probs=115.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|.|..++.|.+-.. +...+ .|..||||+|..||||++++||+..++
T Consensus 61 ~l~Gvd~qk~~L~~NT~----~F~~G------------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 61 DLVGVDRQKEALVRNTE----QFAEG------------------------LPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred HHhCchHHHHHHHHHHH----HHHcC------------------------CcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 36999999998887764 22111 123899999999999999999998888
Q ss_pred CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 355 NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+..+|+++-.++.. ...++ +.++..+ ..-|||+|+.--= .++.....|..+||
T Consensus 113 glrLVEV~k~dl~~-------Lp~l~-~~Lr~~~------~kFIlFcDDLSFe-------------~gd~~yK~LKs~Le 165 (287)
T COG2607 113 GLRLVEVDKEDLAT-------LPDLV-ELLRARP------EKFILFCDDLSFE-------------EGDDAYKALKSALE 165 (287)
T ss_pred CCeEEEEcHHHHhh-------HHHHH-HHHhcCC------ceEEEEecCCCCC-------------CCchHHHHHHHHhc
Confidence 45688888877751 12333 3333333 3469999985431 22337788999999
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccH-HHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dL-e~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v 513 (684)
|.+. --..|++|.+|+|...| .+.+.+ ..++. ..+
T Consensus 166 G~ve-----------------~rP~NVl~YATSNRRHLl~e~~~d-----n~~~~----------------------~ei 201 (287)
T COG2607 166 GGVE-----------------GRPANVLFYATSNRRHLLPEDMKD-----NEGST----------------------GEI 201 (287)
T ss_pred CCcc-----------------cCCCeEEEEEecCCcccccHhhhh-----CCCcc----------------------ccc
Confidence 7443 23568999999996653 111111 11111 234
Q ss_pred cchhhhhhcCccccccccceEEEccccCHHHHHHHHhc
Q 005670 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 514 ~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~ 551 (684)
.+.|.++..+ .|-+||...+.|.+.+.++...|+..
T Consensus 202 h~~eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~ 237 (287)
T COG2607 202 HPSEAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDH 237 (287)
T ss_pred ChhHHHHHhh--chhhhcceeecccCCCHHHHHHHHHH
Confidence 4444444444 37789999999999999999998876
No 210
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.8e-09 Score=118.35 Aligned_cols=194 Identities=23% Similarity=0.306 Sum_probs=125.7
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 328 LEKSNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 328 ~~~~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
....++||.||+|+|||.|++++++++. +.+..++|+++..... +...+.+...|..+- ...|+||+||+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~--e~iQk~l~~vfse~~----~~~PSiIvLDd 502 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL--EKIQKFLNNVFSEAL----WYAPSIIVLDD 502 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH--HHHHHHHHHHHHHHH----hhCCcEEEEcc
Confidence 3357999999999999999999999984 4577889998874331 123445555555543 35899999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccC
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
+|.+....+..++.-++..+.....|.+++... .-+.+.+.||++++-- .
T Consensus 503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y------------------~~~~~~ia~Iat~qe~--q---------- 552 (952)
T KOG0735|consen 503 LDCLASASSNENGQDGVVSERLAAFLNQVIKIY------------------LKRNRKIAVIATGQEL--Q---------- 552 (952)
T ss_pred hhhhhccCcccCCcchHHHHHHHHHHHHHHHHH------------------HccCcEEEEEEechhh--h----------
Confidence 999987433222222222222222233444311 0112237788887610 0
Q ss_pred CCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHH
Q 005670 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563 (684)
Q Consensus 484 ~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~ 563 (684)
++. .++ +.| .+|+.++.++++...+..+|++..+...
T Consensus 553 --------------------tl~-~~L------------~s~---~~Fq~~~~L~ap~~~~R~~IL~~~~s~~------- 589 (952)
T KOG0735|consen 553 --------------------TLN-PLL------------VSP---LLFQIVIALPAPAVTRRKEILTTIFSKN------- 589 (952)
T ss_pred --------------------hcC-hhh------------cCc---cceEEEEecCCcchhHHHHHHHHHHHhh-------
Confidence 000 000 112 2789999999999999999998743221
Q ss_pred HHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q 005670 564 FQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 564 ~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
....+.+.++.++.+ +.++-++.|.-.++|++..+..
T Consensus 590 ------~~~~~~~dLd~ls~~--TEGy~~~DL~ifVeRai~~a~l 626 (952)
T KOG0735|consen 590 ------LSDITMDDLDFLSVK--TEGYLATDLVIFVERAIHEAFL 626 (952)
T ss_pred ------hhhhhhHHHHHHHHh--cCCccchhHHHHHHHHHHHHHH
Confidence 133455667777774 7888999999999999998873
No 211
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.96 E-value=7.6e-09 Score=119.42 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=127.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEecccccccccccc-hhHHHHHHHH-hcccchHhhhcCcEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQARYVGE-DVESILYKLL-TVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~--~pfv~i~~s~l~~s~yvG~-~~~~~l~~l~-~~a~~~v~~a~~gILfIDEIDk 406 (684)
.+|||.|+.||+|++++++++..+. .||+.+.-+.-. ...+|. +.+..+..=- .-.++.+..+++|||||||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~-~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIAD-DRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcH-HHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 7899999999999999999999985 488776654322 345553 2222221111 1346778889999999999999
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCC
Q 005670 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lg 486 (684)
+.+. +++.|++.||...+.|...|.. ..-..++++|++-+.. .
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR~G~s--------~~~Pa~F~LIat~~~~---------------~ 147 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLERDGLA--------LRLPARFGLVALDEGA---------------E 147 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEECCcE--------EecCCCcEEEecCCCh---------------h
Confidence 9988 9999999999666665322211 1223456777652200 0
Q ss_pred CCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHh
Q 005670 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQM 566 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~ 566 (684)
..+.+++++++||+..|.+..++..+..+.. .... -+...++++.
T Consensus 148 --------------------------------~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~-~~~~-~I~~AR~rl~- 192 (584)
T PRK13406 148 --------------------------------EDERAPAALADRLAFHLDLDGLALRDAREIP-IDAD-DIAAARARLP- 192 (584)
T ss_pred --------------------------------cccCCCHHhHhheEEEEEcCCCChHHhcccC-CCHH-HHHHHHHHHc-
Confidence 0134778899999999999999887654311 1111 1222233331
Q ss_pred cCccccccHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHH
Q 005670 567 NGVKLHFTENALRLIAKKAISKNT-GARGLRSLLENILM 604 (684)
Q Consensus 567 ~gi~l~~s~eAl~~La~~a~~~~~-GAR~Lr~iIe~~l~ 604 (684)
.+.++++.++++++.....+. +.|..-.+++-.-.
T Consensus 193 ---~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa 228 (584)
T PRK13406 193 ---AVGPPPEAIAALCAAAAALGIASLRAPLLALRAARA 228 (584)
T ss_pred ---cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 567888888888776544444 55776666654333
No 212
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.1e-08 Score=110.53 Aligned_cols=130 Identities=20% Similarity=0.270 Sum_probs=86.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEecccccccccccchhHHHHHHHHhc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQARYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~ 386 (684)
+.+||+||+|+|||++|+++|+.+.+. +..+.... ....++. ..++++.+.
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~--~~~~i~i---d~iR~l~~~ 97 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE--ADKTIKV---DQVRELVSF 97 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC--CCCCCCH---HHHHHHHHH
Confidence 789999999999999999999999542 11111100 0012232 344554433
Q ss_pred ccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEec
Q 005670 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~t 466 (684)
.......+...|++|||+|+|... .+|+||+.||+ ...+++||++
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE---------------------Pp~~~~fiL~ 142 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE---------------------PSGDTVLLLI 142 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC---------------------CCCCeEEEEE
Confidence 222222346689999999999887 99999999993 1235777877
Q ss_pred cCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHH
Q 005670 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~ 546 (684)
++..+ .+.|.+++|+. ++.|.+++.+++.
T Consensus 143 t~~~~--------------------------------------------------~ll~TI~SRc~-~~~~~~~~~~~~~ 171 (328)
T PRK05707 143 SHQPS--------------------------------------------------RLLPTIKSRCQ-QQACPLPSNEESL 171 (328)
T ss_pred ECChh--------------------------------------------------hCcHHHHhhce-eeeCCCcCHHHHH
Confidence 66211 13466677776 6999999999988
Q ss_pred HHHhc
Q 005670 547 QVLTE 551 (684)
Q Consensus 547 ~Il~~ 551 (684)
+.+..
T Consensus 172 ~~L~~ 176 (328)
T PRK05707 172 QWLQQ 176 (328)
T ss_pred HHHHH
Confidence 87754
No 213
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=4e-08 Score=101.91 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=51.5
Q ss_pred ccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCc--cccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 526 EFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV--KLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 526 eLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi--~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
.+.+|+...+.+++++.+++.+++...+.. .+. ...+++++++.|.+.+ .+..|.+..+...++
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~-----------~g~~~~~~~~~~~~~~i~~~s---~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLER-----------AGNRDAPVFSEGAFDAIHRFS---RGIPRLINILCDRLL 243 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHH-----------cCCCCCCCcCHHHHHHHHHHc---CCcccHHHHHHHHHH
Confidence 467788888999999999999887653211 121 3468999999999963 333678888888887
Q ss_pred HHHHhc
Q 005670 604 MDAMYE 609 (684)
Q Consensus 604 ~~al~e 609 (684)
..+..+
T Consensus 244 ~~a~~~ 249 (269)
T TIGR03015 244 LSAFLE 249 (269)
T ss_pred HHHHHc
Confidence 776654
No 214
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.88 E-value=9.8e-09 Score=116.75 Aligned_cols=231 Identities=17% Similarity=0.265 Sum_probs=129.7
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (684)
|.+.+...|.|.|.+|+.|.-.+...-..-. ....-....-||||+|.||||||.+.+.+
T Consensus 423 La~SiAPsIye~edvKkglLLqLfGGt~k~~--------------------~~~~~~R~~INILL~GDPGtsKSqlLqyv 482 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLFGGTRKED--------------------EKSGRFRGDINILLVGDPGTSKSQLLQYC 482 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHhcCCcccc--------------------cccccccccceEEEecCCCcCHHHHHHHH
Confidence 3344445588999999888766642111000 00000112269999999999999999999
Q ss_pred HHHhCCCE-EEEeccccc-ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHH
Q 005670 351 ARYVNVPF-VIADATTLT-QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 351 A~~l~~pf-v~i~~s~l~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~ 428 (684)
++.+.+-. ..-..+.-+ ...|+-.+ ...++++-+ .+.+..+.+||-.|||+|||..+ .++.
T Consensus 483 ~~l~pRg~yTSGkGsSavGLTayVtrd--~dtkqlVLe-sGALVLSD~GiCCIDEFDKM~dS--------------trSv 545 (804)
T KOG0478|consen 483 HRLLPRGVYTSGKGSSAVGLTAYVTKD--PDTRQLVLE-SGALVLSDNGICCIDEFDKMSDS--------------TRSV 545 (804)
T ss_pred HHhCCcceeecCCccchhcceeeEEec--Cccceeeee-cCcEEEcCCceEEchhhhhhhHH--------------HHHH
Confidence 99984422 222222111 01122211 111222221 23344567899999999999766 8899
Q ss_pred HHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHH
Q 005670 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~ 508 (684)
|+++||...++|+.-|.... .+.+ +-+++++|..+ +.-..+. .
T Consensus 546 LhEvMEQQTvSIAKAGII~s-------LNAR-~SVLAaANP~~-----------skynp~k------------------~ 588 (804)
T KOG0478|consen 546 LHEVMEQQTLSIAKAGIIAS-------LNAR-CSVLAAANPIR-----------SKYNPNK------------------S 588 (804)
T ss_pred HHHHHHHhhhhHhhcceeee-------cccc-ceeeeeecccc-----------ccCCCCC------------------c
Confidence 99999988888877665442 2222 45666666331 1111111 2
Q ss_pred HHhhccchhhhhhcCccccccccceE-EEccccCHHHHHHHHhchH----H------------HHHHHHHHHHHhcCccc
Q 005670 509 LMETVESSDLIAYGLIPEFVGRFPVL-VSLLALTENQLVQVLTEPK----N------------ALGKQYRKMFQMNGVKL 571 (684)
Q Consensus 509 Ll~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLseeel~~Il~~~l----~------------~L~kq~~~~~~~~gi~l 571 (684)
+.+.+ .++|.|++|||.| +.|.+.++..=..+..+.. . .+.+-|.. .+.+.+.-
T Consensus 589 i~eNI--------~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~-yArk~i~p 659 (804)
T KOG0478|consen 589 IIENI--------NLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIR-YARKNIHP 659 (804)
T ss_pred hhhcc--------CCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHH-HHhccCCc
Confidence 33333 3889999999988 5556665542122222211 1 11222222 12344566
Q ss_pred cccHHHHHHHHHh
Q 005670 572 HFTENALRLIAKK 584 (684)
Q Consensus 572 ~~s~eAl~~La~~ 584 (684)
.++++|...+...
T Consensus 660 ~l~~ea~~~l~~a 672 (804)
T KOG0478|consen 660 ALSPEASQALIQA 672 (804)
T ss_pred cccHHHHHHHHHH
Confidence 7888888887765
No 215
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=6.1e-08 Score=104.64 Aligned_cols=129 Identities=22% Similarity=0.355 Sum_probs=86.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEecccccccccccchhHHHHHHHHhc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQARYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~ 386 (684)
+.+||+||+|+||+++|+++|+.+.+. |..+... +...+|.+ .++++.+.
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~I~id---~iR~l~~~ 98 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNKDIGVD---QVREINEK 98 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCCCCCHH---HHHHHHHH
Confidence 789999999999999999999998431 1111110 11223332 34444433
Q ss_pred ccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEec
Q 005670 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~t 466 (684)
...........|++||++|+|... .+|+||+.||+ ...+++||++
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~ 143 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE---------------------PRPNTYFLLQ 143 (325)
T ss_pred HhhccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 222222345689999999999887 99999999994 1235778887
Q ss_pred cCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHH
Q 005670 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~ 546 (684)
++.. . .+.|.+++|.- ++.|.+++.+++.
T Consensus 144 t~~~--------------------------------~------------------~llpTI~SRC~-~~~~~~~~~~~~~ 172 (325)
T PRK06871 144 ADLS--------------------------------A------------------ALLPTIYSRCQ-TWLIHPPEEQQAL 172 (325)
T ss_pred ECCh--------------------------------H------------------hCchHHHhhce-EEeCCCCCHHHHH
Confidence 6521 1 13355566665 7899999999998
Q ss_pred HHHhc
Q 005670 547 QVLTE 551 (684)
Q Consensus 547 ~Il~~ 551 (684)
+.+..
T Consensus 173 ~~L~~ 177 (325)
T PRK06871 173 DWLQA 177 (325)
T ss_pred HHHHH
Confidence 87765
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=4.4e-08 Score=106.23 Aligned_cols=132 Identities=20% Similarity=0.242 Sum_probs=85.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC--EEEEecc-----------------ccccc---ccccchhHHHHHHHHhccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADAT-----------------TLTQA---RYVGEDVESILYKLLTVSD 388 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p--fv~i~~s-----------------~l~~s---~yvG~~~~~~l~~l~~~a~ 388 (684)
+.+||+||+|+||+++|.++|+.+-+. --...|. .+.+. ..++.+ .++++.+...
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~id---qiR~l~~~~~ 101 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVD---AVREVTEKLY 101 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHH---HHHHHHHHHh
Confidence 789999999999999999999998431 0000011 01110 123322 3444433322
Q ss_pred chHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccC
Q 005670 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (684)
Q Consensus 389 ~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn 468 (684)
.....+...|++||++|+|... .+|+||+.||+ | ..+++||+.+.
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE-----P----------------p~~t~fiL~t~ 146 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE-----P----------------PENTWFFLACR 146 (334)
T ss_pred hccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC-----C----------------CCCeEEEEEEC
Confidence 1112346689999999999887 99999999994 1 23477888765
Q ss_pred cccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHH
Q 005670 469 FVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQV 548 (684)
Q Consensus 469 ~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~I 548 (684)
..+ .+.|-+++|.. .+.|++++.+++.+.
T Consensus 147 ~~~--------------------------------------------------~lLpTIrSRCq-~~~~~~~~~~~~~~~ 175 (334)
T PRK07993 147 EPA--------------------------------------------------RLLATLRSRCR-LHYLAPPPEQYALTW 175 (334)
T ss_pred Chh--------------------------------------------------hChHHHHhccc-cccCCCCCHHHHHHH
Confidence 211 13355666666 679999999998877
Q ss_pred Hhc
Q 005670 549 LTE 551 (684)
Q Consensus 549 l~~ 551 (684)
+.+
T Consensus 176 L~~ 178 (334)
T PRK07993 176 LSR 178 (334)
T ss_pred HHH
Confidence 643
No 217
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=6.8e-08 Score=104.07 Aligned_cols=135 Identities=21% Similarity=0.188 Sum_probs=84.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE--EEEecc-----------ccc----ccccccch-----hHHHHHHHHhccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPF--VIADAT-----------TLT----QARYVGED-----VESILYKLLTVSD 388 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf--v~i~~s-----------~l~----~s~yvG~~-----~~~~l~~l~~~a~ 388 (684)
+.+||+||+|+||+++|.++|+.+.+.- -.-.|. ++. .+...|.. .-..++++.+...
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 6799999999999999999999884310 000010 000 01111100 0223444443322
Q ss_pred chHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccC
Q 005670 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (684)
Q Consensus 389 ~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn 468 (684)
..-......|++||++|+|... .+|+||+.||+ ...+++||++++
T Consensus 107 ~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~~~ 151 (319)
T PRK08769 107 LTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEE---------------------PSPGRYLWLISA 151 (319)
T ss_pred hCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhC---------------------CCCCCeEEEEEC
Confidence 1111234579999999999877 89999999993 123467777765
Q ss_pred cccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHH
Q 005670 469 FVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQV 548 (684)
Q Consensus 469 ~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~I 548 (684)
..+ .+.|.+++|+. ++.|.+++.++..+.
T Consensus 152 ~~~--------------------------------------------------~lLpTIrSRCq-~i~~~~~~~~~~~~~ 180 (319)
T PRK08769 152 QPA--------------------------------------------------RLPATIRSRCQ-RLEFKLPPAHEALAW 180 (319)
T ss_pred Chh--------------------------------------------------hCchHHHhhhe-EeeCCCcCHHHHHHH
Confidence 211 13455666766 788999999988877
Q ss_pred Hhc
Q 005670 549 LTE 551 (684)
Q Consensus 549 l~~ 551 (684)
+..
T Consensus 181 L~~ 183 (319)
T PRK08769 181 LLA 183 (319)
T ss_pred HHH
Confidence 754
No 218
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.4e-08 Score=113.67 Aligned_cols=147 Identities=18% Similarity=0.327 Sum_probs=103.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
..+||+|+||||||++.+++|++++.+++.+||.++. +.--+.. +..+...|.++.. ..++||||-.+|-+.-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~-~~s~~~~-etkl~~~f~~a~~----~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELV-AESASHT-ETKLQAIFSRARR----CSPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHh-hcccchh-HHHHHHHHHHHhh----cCceEEEEeccceeeec
Confidence 5899999999999999999999999999999999998 3334444 5567777776653 58999999999998754
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~ 490 (684)
... +.|.. ++..+-..|.... ...+...++||++++..+
T Consensus 506 ~dg---ged~r---l~~~i~~~ls~e~----------------~~~~~~~~ivv~t~~s~~------------------- 544 (953)
T KOG0736|consen 506 QDG---GEDAR---LLKVIRHLLSNED----------------FKFSCPPVIVVATTSSIE------------------- 544 (953)
T ss_pred CCC---chhHH---HHHHHHHHHhccc----------------ccCCCCceEEEEeccccc-------------------
Confidence 221 22222 3333333333000 122344578888766221
Q ss_pred cccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHH
Q 005670 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (684)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~ 555 (684)
+++|.+.+-+...|.++.+++++..+|++-..+.
T Consensus 545 -------------------------------~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 545 -------------------------------DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred -------------------------------cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 3556677777778999999999999998865433
No 219
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.70 E-value=5.1e-09 Score=113.33 Aligned_cols=254 Identities=21% Similarity=0.265 Sum_probs=124.0
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (684)
+-+.+-..|+|.+.+|..+.-.+...... . . .+..-....-|+||+|.||||||.|.+.+
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~~~~-------~---------~----~~~~~~r~~ihiLlvGdpg~gKS~ll~~~ 77 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGGVEK-------N---------D----PDGTRIRGNIHILLVGDPGTGKSQLLKYV 77 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT--SC-------C---------C----CT-TEE--S--EEEECSCHHCHHHHHHCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhcccc-------c---------c----ccccccccccceeeccchhhhHHHHHHHH
Confidence 55566677999999998776554311110 0 0 00011122379999999999999999988
Q ss_pred HHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 351 ARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 351 A~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
++.... -+.+++...+..+....-.......-+.-..|.+..+.+||++|||+|++... ..+.|+
T Consensus 78 ~~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------------~~~~l~ 142 (331)
T PF00493_consen 78 AKLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------------DRDALH 142 (331)
T ss_dssp CCT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------------HHHHHH
T ss_pred HhhCCc-eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch--------------HHHHHH
Confidence 776633 33444433222222111000000000111223455678899999999999876 789999
Q ss_pred HHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHH
Q 005670 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll 510 (684)
++||...+.|...| -.....+ ++-+++++|... ++++.. ..+.
T Consensus 143 eaMEqq~isi~kag-------i~~~l~a-r~svlaa~NP~~-------g~~~~~----------------------~~~~ 185 (331)
T PF00493_consen 143 EAMEQQTISIAKAG-------IVTTLNA-RCSVLAAANPKF-------GRYDPN----------------------KSLS 185 (331)
T ss_dssp HHHHCSCEEECTSS-------SEEEEE----EEEEEE--TT---------S-TT----------------------S-CG
T ss_pred HHHHcCeeccchhh-------hcccccc-hhhhHHHHhhhh-------hhcchh----------------------hhhH
Confidence 99997677764332 1223333 456777777431 111110 0011
Q ss_pred hhccchhhhhhcCccccccccceEEEc-cccCHHHHHH----HHhchHHH------------------HHHHHHHHHHhc
Q 005670 511 ETVESSDLIAYGLIPEFVGRFPVLVSL-LALTENQLVQ----VLTEPKNA------------------LGKQYRKMFQMN 567 (684)
Q Consensus 511 ~~v~~~dll~~~f~PeLl~R~d~iI~f-~pLseeel~~----Il~~~l~~------------------L~kq~~~~~~~~ 567 (684)
+.+ .+.++|++|||.++.+ .+.+++.=.. |+..+... +.++|-... ..
T Consensus 186 ~ni--------~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~ya-r~ 256 (331)
T PF00493_consen 186 ENI--------NLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYA-RQ 256 (331)
T ss_dssp CCT---------S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHH-HH
T ss_pred Hhc--------ccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHH-Hh
Confidence 111 3778999999988665 4454333222 33332211 112332222 12
Q ss_pred CccccccHHHHHHHHHhcCC------------CCCCHHHHHHHHHHHHHHH
Q 005670 568 GVKLHFTENALRLIAKKAIS------------KNTGARGLRSLLENILMDA 606 (684)
Q Consensus 568 gi~l~~s~eAl~~La~~a~~------------~~~GAR~Lr~iIe~~l~~a 606 (684)
.+...++++|.+.|.++ |. .+..+|.|+.+|+-.-..+
T Consensus 257 ~~~P~ls~ea~~~I~~~-Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~A 306 (331)
T PF00493_consen 257 NIHPVLSEEAKELIINY-YVELRKESKSNNKSIPITIRQLESLIRLSEAHA 306 (331)
T ss_dssp HC--EE-HHCHHHHHHH-HCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHH
T ss_pred hcccccCHHHHHHHHHH-HHHhcccccccccccccchhhHHHHHHHHHHHH
Confidence 34567899998888876 31 2345777888876444333
No 220
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=2.6e-07 Score=99.62 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=84.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC-----------------------EEEEecccccccccccchhHHHHHHHHhcc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP-----------------------FVIADATTLTQARYVGEDVESILYKLLTVS 387 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p-----------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a 387 (684)
+.+||.||.|+||+.+|+++|+.+.+. |..+.... ..+.++. ..++++.+..
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~~I~v---dqiR~l~~~~ 100 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EGKSITV---EQIRQCNRLA 100 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CCCcCCH---HHHHHHHHHH
Confidence 789999999999999999999998431 21121110 0112232 2344443322
Q ss_pred cchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEecc
Q 005670 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (684)
Q Consensus 388 ~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tg 467 (684)
......+...|++||++|+|... .+|+||+.||+ ...+++||+.+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t 145 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE---------------------PAPNCLFLLVT 145 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEE
Confidence 11112345679999999999877 99999999994 12357788776
Q ss_pred CcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHH
Q 005670 468 AFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ 547 (684)
Q Consensus 468 n~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~ 547 (684)
+..+ .+.|-+++|.- .+.|.+++.+++.+
T Consensus 146 ~~~~--------------------------------------------------~lLpTI~SRCq-~~~~~~~~~~~~~~ 174 (319)
T PRK06090 146 HNQK--------------------------------------------------RLLPTIVSRCQ-QWVVTPPSTAQAMQ 174 (319)
T ss_pred CChh--------------------------------------------------hChHHHHhcce-eEeCCCCCHHHHHH
Confidence 5211 13355566665 78899999998888
Q ss_pred HHhc
Q 005670 548 VLTE 551 (684)
Q Consensus 548 Il~~ 551 (684)
.+..
T Consensus 175 ~L~~ 178 (319)
T PRK06090 175 WLKG 178 (319)
T ss_pred HHHH
Confidence 7754
No 221
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=7.8e-08 Score=104.51 Aligned_cols=133 Identities=21% Similarity=0.275 Sum_probs=87.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCE-------------------------EEEeccccc-----------------
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPF-------------------------VIADATTLT----------------- 367 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pf-------------------------v~i~~s~l~----------------- 367 (684)
++.+||+||+|+||+++|+.+|+.+.+.. ..+......
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 38999999999999999999999995421 111100000
Q ss_pred -------ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeec
Q 005670 368 -------QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (684)
Q Consensus 368 -------~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~I 440 (684)
.+..++ -..++++.+........+...|++||++|+|... ..|+||+.||+
T Consensus 101 ~~~k~~~~~~~I~---idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE----- 158 (342)
T PRK06964 101 GGKKTKAPSKEIK---IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLEE----- 158 (342)
T ss_pred ccccccccccccC---HHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhcC-----
Confidence 001112 1344554443322222345679999999999887 99999999993
Q ss_pred cCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhh
Q 005670 441 PEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIA 520 (684)
Q Consensus 441 p~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~ 520 (684)
| ..+++||++++..+
T Consensus 159 P----------------p~~t~fiL~t~~~~------------------------------------------------- 173 (342)
T PRK06964 159 P----------------PPGTVFLLVSARID------------------------------------------------- 173 (342)
T ss_pred C----------------CcCcEEEEEECChh-------------------------------------------------
Confidence 1 23477777765221
Q ss_pred hcCccccccccceEEEccccCHHHHHHHHhc
Q 005670 521 YGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 521 ~~f~PeLl~R~d~iI~f~pLseeel~~Il~~ 551 (684)
.+.|-+++|+- .+.|.+++.+++.+.+..
T Consensus 174 -~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 174 -RLLPTILSRCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -hCcHHHHhcCE-EEEecCCCHHHHHHHHHH
Confidence 24466677774 788999999998887764
No 222
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.67 E-value=2.8e-07 Score=102.87 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=68.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEeccccc------------ccccccchh-HHHHHHHHhcccchHhhhc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLT------------QARYVGEDV-ESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~i~~s~l~------------~s~yvG~~~-~~~l~~l~~~a~~~v~~a~ 395 (684)
.+++|+||||||||++|+.+|..+.. .+..+++..+. .+..+|+.. ...+.++...+... ...
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~~ 272 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PEK 272 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc--ccC
Confidence 79999999999999999999999843 22223222221 122233321 12233333332211 125
Q ss_pred CcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC----ceeeccCCCCccCCCCCeEEEeccceEEEeccCccc
Q 005670 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG----TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (684)
Q Consensus 396 ~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg----~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~d 471 (684)
+.+||||||++...++ +...|+.+||. ....+|-.- ....+..+ .-..|+.||+|.|..|
T Consensus 273 ~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~~v~l~y--~e~d~e~f-~iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 273 KYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENWSVPLTY--SENDEERF-YVPENVYIIGLMNTAD 336 (459)
T ss_pred CcEEEEehhhccCHHH-------------hhhhhhhhccccccccccceeeec--cccccccc-cCCCCeEEEEecCccc
Confidence 6899999999987541 56677888872 111111000 00001112 2357899999998543
No 223
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=1.9e-07 Score=108.70 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=45.7
Q ss_pred cccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc-cHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 005670 524 IPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF-TENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 524 ~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~-s~eAl~~La~~a~~~~~GAR~Lr~iIe 600 (684)
.|++++ |+. +|.|.|++..++.+.|...+..-... .+....+ ++++++.|+.. ..+++|..-+.+|
T Consensus 257 ~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~-------~~~~~~~p~~~~l~~I~~~---s~GDiRsAIn~LQ 325 (637)
T TIGR00602 257 NKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKK-------NGEKIKVPKKTSVELLCQG---CSGDIRSAINSLQ 325 (637)
T ss_pred CHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhc-------cccccccCCHHHHHHHHHh---CCChHHHHHHHHH
Confidence 367776 443 79999999999888877643221111 0112233 67899998883 5677888888887
Q ss_pred HHHH
Q 005670 601 NILM 604 (684)
Q Consensus 601 ~~l~ 604 (684)
-.+.
T Consensus 326 f~~~ 329 (637)
T TIGR00602 326 FSSS 329 (637)
T ss_pred HHHh
Confidence 6554
No 224
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.65 E-value=9.1e-08 Score=86.15 Aligned_cols=76 Identities=28% Similarity=0.435 Sum_probs=51.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC---EEEEeccccccccc------------ccchhHHHHHHHHhcccchHhhhc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQARY------------VGEDVESILYKLLTVSDYNVAAAQ 395 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p---fv~i~~s~l~~s~y------------vG~~~~~~l~~l~~~a~~~v~~a~ 395 (684)
.+++|+||||||||++++.+|..+... ++.+++........ .........+..+..+.. ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK----LK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh----cC
Confidence 689999999999999999999999764 78888775432110 111112333344333322 23
Q ss_pred CcEEEEecccccccc
Q 005670 396 QGIVYIDEVDKITKK 410 (684)
Q Consensus 396 ~gILfIDEIDkl~~~ 410 (684)
+.+|+|||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 589999999999775
No 225
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.64 E-value=2.8e-07 Score=101.80 Aligned_cols=176 Identities=15% Similarity=0.254 Sum_probs=108.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC-----CCEEEEecccccccccccchhHHHHHHHHhcccchH-hhhcCcEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN-----VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~-----~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v-~~a~~gILfIDEI 404 (684)
..++||||+|.|||+|++|++.... ..++.++...+. . ..+..+....-..+ +..+--+++||+|
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~-~--------~~v~a~~~~~~~~Fk~~y~~dlllIDDi 184 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT-N--------DFVKALRDNEMEKFKEKYSLDLLLIDDI 184 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH-H--------HHHHHHHhhhHHHHHHhhccCeeeechH
Confidence 6899999999999999999988872 235555554443 1 11111111000000 0112359999999
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCC
Q 005670 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
+.+..+ + ..|..|.-.++. ..+... .+|+|+....
T Consensus 185 q~l~gk--------~----~~qeefFh~FN~-------------------l~~~~k-qIvltsdr~P------------- 219 (408)
T COG0593 185 QFLAGK--------E----RTQEEFFHTFNA-------------------LLENGK-QIVLTSDRPP------------- 219 (408)
T ss_pred hHhcCC--------h----hHHHHHHHHHHH-------------------HHhcCC-EEEEEcCCCc-------------
Confidence 999765 1 145556665541 001111 3344543110
Q ss_pred CCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccccc--ceEEEccccCHHHHHHHHhchHHHHHHHHHH
Q 005670 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF--PVLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (684)
Q Consensus 485 lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~--d~iI~f~pLseeel~~Il~~~l~~L~kq~~~ 562 (684)
..+ ..+.|.|.+|| ..++.+.+++.+.+..|+.+.. .
T Consensus 220 ----------------------~~l-----------~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka-------~- 258 (408)
T COG0593 220 ----------------------KEL-----------NGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA-------E- 258 (408)
T ss_pred ----------------------hhh-----------ccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH-------H-
Confidence 000 02336677777 4579999999999999987621 1
Q ss_pred HHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhc
Q 005670 563 MFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 563 ~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
...+.++++++++|++. ...+.|+|..+++++...+...
T Consensus 259 -----~~~~~i~~ev~~~la~~---~~~nvReLegaL~~l~~~a~~~ 297 (408)
T COG0593 259 -----DRGIEIPDEVLEFLAKR---LDRNVRELEGALNRLDAFALFT 297 (408)
T ss_pred -----hcCCCCCHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHhc
Confidence 12688999999999996 3456799999999988877654
No 226
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.60 E-value=6.8e-07 Score=93.96 Aligned_cols=63 Identities=25% Similarity=0.441 Sum_probs=46.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
-+|||-.|.++....+. -+..+ .+..+.+|+.|+||||||.+|-.+|+.++
T Consensus 41 GmVGQ~~AR~Aagvi~k----mi~eg-----------------------kiaGraiLiaG~pgtGKtAiAmg~sksLG~~ 93 (454)
T KOG2680|consen 41 GMVGQVKARKAAGVILK----MIREG-----------------------KIAGRAILIAGQPGTGKTAIAMGMSKSLGDD 93 (454)
T ss_pred cchhhHHHHHHhHHHHH----HHHcC-----------------------cccceEEEEecCCCCCceeeeeehhhhhCCC
Confidence 47999998887665553 11111 01127899999999999999999999996
Q ss_pred CCEEEEeccccc
Q 005670 356 VPFVIADATTLT 367 (684)
Q Consensus 356 ~pfv~i~~s~l~ 367 (684)
.||..+.++++.
T Consensus 94 tpF~~i~gSEI~ 105 (454)
T KOG2680|consen 94 TPFTSISGSEIY 105 (454)
T ss_pred Cceeeeecceee
Confidence 588888877653
No 227
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.60 E-value=5.2e-07 Score=94.06 Aligned_cols=163 Identities=23% Similarity=0.326 Sum_probs=105.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEecc---------------------cccccccccchhHHHHHHHHhc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIADAT---------------------TLTQARYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~---pfv~i~~s---------------------~l~~s~yvG~~~~~~l~~l~~~ 386 (684)
.|+|+|||+|+||-+.+.++-+.+.. +=..++.. ++.+ .-.|....-.++++++.
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitP-SDaG~~DRvViQellKe 113 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITP-SDAGNYDRVVIQELLKE 113 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeCh-hhcCcccHHHHHHHHHH
Confidence 69999999999999999999888732 21111111 1112 22343335556666554
Q ss_pred ccch--Hh---hhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccce
Q 005670 387 SDYN--VA---AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDI 461 (684)
Q Consensus 387 a~~~--v~---~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~ni 461 (684)
-... ++ +..-.||+|.|+|++.++ +|.+|.+-||. ...|+
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEk---------------------Ys~~~ 158 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEK---------------------YSSNC 158 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHH---------------------HhcCc
Confidence 2110 11 113479999999999987 99999999992 22345
Q ss_pred EEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccC
Q 005670 462 LFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT 541 (684)
Q Consensus 462 IfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLs 541 (684)
.+|+..|... .+++++.+|.- .|..+.++
T Consensus 159 RlIl~cns~S--------------------------------------------------riIepIrSRCl-~iRvpaps 187 (351)
T KOG2035|consen 159 RLILVCNSTS--------------------------------------------------RIIEPIRSRCL-FIRVPAPS 187 (351)
T ss_pred eEEEEecCcc--------------------------------------------------cchhHHhhhee-EEeCCCCC
Confidence 5555555110 24566777765 78899999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHH
Q 005670 542 ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLL 599 (684)
Q Consensus 542 eeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iI 599 (684)
++|+..++...+.. + .+.+..+.+..+++.+ + |.||+.|
T Consensus 188 ~eeI~~vl~~v~~k-----------E--~l~lp~~~l~rIa~kS---~---~nLRrAl 226 (351)
T KOG2035|consen 188 DEEITSVLSKVLKK-----------E--GLQLPKELLKRIAEKS---N---RNLRRAL 226 (351)
T ss_pred HHHHHHHHHHHHHH-----------h--cccCcHHHHHHHHHHh---c---ccHHHHH
Confidence 99999998763221 1 5677899999999963 2 5666655
No 228
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.56 E-value=4.8e-08 Score=110.09 Aligned_cols=156 Identities=15% Similarity=0.243 Sum_probs=87.1
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (684)
+-..+...|.|.+.+|+++.-++.....+--.+. ..+ ..-.|+||+|.|||||+.+.|.+
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~k-------------------hkv-RGDinvLL~GDPGTaKSQFLKY~ 502 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPKNPGGK-------------------HKV-RGDINVLLLGDPGTAKSQFLKYA 502 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCccCCCCC-------------------cee-ccceeEEEecCCCccHHHHHHHH
Confidence 3344445689999999999988863222110000 001 11279999999999999999999
Q ss_pred HHHhCCCEEEE-ecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHH
Q 005670 351 ARYVNVPFVIA-DATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 351 A~~l~~pfv~i-~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
++...+.++.. .++.-. ++..+-...-+..-+.-..+.+..|.+||.+|||+|+|... --..+
T Consensus 503 eK~s~RAV~tTGqGASav--GLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndq--------------DRtSI 566 (854)
T KOG0477|consen 503 EKTSPRAVFTTGQGASAV--GLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQ--------------DRTSI 566 (854)
T ss_pred HhcCcceeEeccCCcccc--ceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhccc--------------ccchH
Confidence 99886654332 221111 11111000001111111123344678899999999999754 12336
Q ss_pred HHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcc
Q 005670 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 430 L~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~ 470 (684)
-+.||..-+.|..-|..+.-++ .+.+|+|+|..
T Consensus 567 HEAMEQQSISISKAGIVtsLqA--------rctvIAAanPi 599 (854)
T KOG0477|consen 567 HEAMEQQSISISKAGIVTSLQA--------RCTVIAAANPI 599 (854)
T ss_pred HHHHHhcchhhhhhhHHHHHHh--------hhhhheecCCC
Confidence 6677755555533333332222 36778888854
No 229
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.53 E-value=1.3e-07 Score=100.20 Aligned_cols=90 Identities=27% Similarity=0.356 Sum_probs=56.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec-ccccccccccchhHHHHHHHHhcccc--hHh-hhcCcEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA-TTLTQARYVGEDVESILYKLLTVSDY--NVA-AAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~-s~l~~s~yvG~~~~~~l~~l~~~a~~--~v~-~a~~gILfIDEIDk 406 (684)
.|.|+|||||||||....+.|+.+..|.-.-++ -++..+.-.|-++-+.-...|..... .+. .+....|++||+|.
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADa 142 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADA 142 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhH
Confidence 499999999999999999999999664111110 01111223333322222223332221 011 13567999999999
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHc
Q 005670 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+... +|++|.+.+|
T Consensus 143 MT~~--------------AQnALRRvie 156 (360)
T KOG0990|consen 143 MTRD--------------AQNALRRVIE 156 (360)
T ss_pred hhHH--------------HHHHHHHHHH
Confidence 9987 9999999887
No 230
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=5.4e-07 Score=97.46 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=57.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC-------------------------EEEEeccccc-ccc----cccchhHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP-------------------------FVIADATTLT-QAR----YVGEDVESIL 380 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p-------------------------fv~i~~s~l~-~s~----yvG~~~~~~l 380 (684)
+.+||+||+|+|||++|+.+|+.+.+. |+.++...-. +.+ -++ -..+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~---id~i 98 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK---IDAV 98 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC---HHHH
Confidence 789999999999999999999998431 3333321100 001 122 2345
Q ss_pred HHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 381 YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 381 ~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+++.+........+...|++||+++.+... .++.|++.||
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LE 138 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLE 138 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHH
Confidence 555444322222346789999999999887 8999999998
No 231
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1.1e-06 Score=97.03 Aligned_cols=208 Identities=19% Similarity=0.238 Sum_probs=129.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.++|.+.-+..+.+.+..|.-. +. .+.+.+.|-||||||.+...+-..+.
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------------~t------------~gSlYVsG~PGtgkt~~l~rvl~~~~~~ 202 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------------NT------------SGSLYVSGQPGTGKTALLSRVLDSLSKS 202 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------------cc------------CcceEeeCCCCcchHHHHHHHHHhhhhh
Confidence 4889999999999988765441 11 27899999999999998876544442
Q ss_pred --C-CEEEEecccccccc-------------cccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCC
Q 005670 356 --V-PFVIADATTLTQAR-------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 356 --~-pfv~i~~s~l~~s~-------------yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d 419 (684)
. ..++++|.++.++. .+|...+......|...- ......-|+++||+|.+...
T Consensus 203 ~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~--~q~k~~~llVlDEmD~L~tr--------- 271 (529)
T KOG2227|consen 203 SKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT--KQSKFMLLLVLDEMDHLITR--------- 271 (529)
T ss_pred cccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--hcccceEEEEechhhHHhhc---------
Confidence 2 34889999876321 111111111112221110 01123569999999999865
Q ss_pred CcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCC
Q 005670 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~ 499 (684)
-+..|+.+++-- ....+.+++|.-+|.-||-+.
T Consensus 272 -----~~~vLy~lFewp------------------~lp~sr~iLiGiANslDlTdR------------------------ 304 (529)
T KOG2227|consen 272 -----SQTVLYTLFEWP------------------KLPNSRIILIGIANSLDLTDR------------------------ 304 (529)
T ss_pred -----ccceeeeehhcc------------------cCCcceeeeeeehhhhhHHHH------------------------
Confidence 355677777610 123445666666664443211
Q ss_pred CchhhhhHHHHhhccchhhhhhcCccccccc---cceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH
Q 005670 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGR---FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 500 ~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R---~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e 576 (684)
|-|-|..| -+.++.|+||+.+++.+|++..+... . ...+-+.
T Consensus 305 -----------------------~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~-----------~-t~~~~~~ 349 (529)
T KOG2227|consen 305 -----------------------FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE-----------S-TSIFLNA 349 (529)
T ss_pred -----------------------HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc-----------c-ccccchH
Confidence 11222222 24579999999999999997632222 1 3345557
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 005670 577 ALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 577 Al~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
|++..|++.....++.|.+-.+++++++-+
T Consensus 350 Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 350 AIELCARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 999999986666777888888888777644
No 232
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2e-06 Score=91.55 Aligned_cols=88 Identities=23% Similarity=0.156 Sum_probs=56.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec-----------cccccc---ccccchhHHHHHHHHhcccchHhhhcC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA-----------TTLTQA---RYVGEDVESILYKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~-----------s~l~~s---~yvG~~~~~~l~~l~~~a~~~v~~a~~ 396 (684)
+.+||+||+|+||+.+|.++|+.+-+.-....| ..+.+. ..++.+ .++++.+.....-..+..
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~id---qiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIE---TPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHH---HHHHHHHHHhhCccCCCc
Confidence 789999999999999999999998542100011 001111 112322 334443332211113456
Q ss_pred cEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.|++||++|+|... .+|+||+.||+
T Consensus 97 kv~ii~~ad~mt~~--------------AaNaLLK~LEE 121 (290)
T PRK05917 97 KIYIIHEADRMTLD--------------AISAFLKVLED 121 (290)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHhhc
Confidence 79999999999887 99999999993
No 233
>PF13173 AAA_14: AAA domain
Probab=98.47 E-value=9.7e-07 Score=82.29 Aligned_cols=70 Identities=26% Similarity=0.367 Sum_probs=46.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~--~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 408 (684)
..++|+||.|||||++++.+++.+. ..++.+++.+....... . .. +.+.+.... .....+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~~----~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLELI----KPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHhh----ccCCcEEEEehhhhhc
Confidence 5789999999999999999998875 67788888765421100 0 00 112222110 0156899999999985
No 234
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.7e-06 Score=91.99 Aligned_cols=96 Identities=26% Similarity=0.333 Sum_probs=64.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
...+||.||||+|||.||-.+|...+-||+.+-..+-. .++.-...-..+.+.|+++. +.+-.||++|+|+.+..
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m-iG~sEsaKc~~i~k~F~DAY----kS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM-IGLSESAKCAHIKKIFEDAY----KSPLSIIVVDDIERLLD 612 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc-cCccHHHHHHHHHHHHHHhh----cCcceEEEEcchhhhhc
Confidence 37899999999999999999999999999977543211 12211122234566676654 24668999999999864
Q ss_pred ccccccCCCCCcchHHHHHHHHHHc
Q 005670 410 KAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
- ...++- ....++++|+-+|.
T Consensus 613 ~---vpIGPR-fSN~vlQaL~VllK 633 (744)
T KOG0741|consen 613 Y---VPIGPR-FSNLVLQALLVLLK 633 (744)
T ss_pred c---cccCch-hhHHHHHHHHHHhc
Confidence 2 112222 22347777777775
No 235
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.44 E-value=1.5e-06 Score=81.42 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=53.1
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005670 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (684)
.+...|+..|++.++||+-|++.|..+|..|+.. ..+++| -.+.|+|+||||||.
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-------------~~p~Kp------------LVlSfHG~tGtGKn~ 68 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-------------PNPRKP------------LVLSFHGWTGTGKNF 68 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-------------CCCCCC------------EEEEeecCCCCcHHH
Confidence 4567799999999999999999999999866542 122333 677799999999999
Q ss_pred HHHHHHHHh
Q 005670 346 LAKTLARYV 354 (684)
Q Consensus 346 LAraLA~~l 354 (684)
+++.||+.+
T Consensus 69 v~~liA~~l 77 (127)
T PF06309_consen 69 VSRLIAEHL 77 (127)
T ss_pred HHHHHHHHH
Confidence 999999997
No 236
>PRK08116 hypothetical protein; Validated
Probab=98.37 E-value=9.8e-07 Score=92.99 Aligned_cols=85 Identities=19% Similarity=0.382 Sum_probs=53.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---cccccchhHHHHHHHHhcccchHhhhcCcEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~---s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 404 (684)
.+++|+|+||||||+||.++++.+ +.+++.++..++.. ..|.+.. ......++.. .....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~------l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRS------LVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHH------hcCCCEEEEecc
Confidence 469999999999999999999987 67788888776541 1111100 0000111111 123469999999
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.-.. .+-.+..|+.+++
T Consensus 188 g~e~~------------t~~~~~~l~~iin 205 (268)
T PRK08116 188 GAERD------------TEWAREKVYNIID 205 (268)
T ss_pred cCCCC------------CHHHHHHHHHHHH
Confidence 65321 1226788889888
No 237
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.37 E-value=9.9e-07 Score=97.96 Aligned_cols=255 Identities=16% Similarity=0.273 Sum_probs=136.3
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (684)
+.+.+...|.|.+++|+++.-.+... .+++.+.|..- ...-||||.|.|||.|+.|.+-+
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLFgG-------srK~LpDg~~l-------------RGDINVLLLGDPgtAKSQlLKFv 384 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLFGG-------SRKRLPDGVTL-------------RGDINVLLLGDPGTAKSQLLKFV 384 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhhcC-------ccccCCCccee-------------ccceeEEEecCCchhHHHHHHHH
Confidence 44455556999999999998777522 22222221111 11269999999999999999988
Q ss_pred HHHhCCCEEEEecccccccccccchhH-HHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHH
Q 005670 351 ARYVNVPFVIADATTLTQARYVGEDVE-SILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 351 A~~l~~pfv~i~~s~l~~s~yvG~~~~-~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
-+....-++ .++..-..+++...-.. ...++ |-...+....|.+||+.|||+|+|... ---++
T Consensus 385 EkvsPIaVY-TSGKGSSAAGLTASV~RD~~tRe-FylEGGAMVLADgGVvCIDEFDKMre~--------------DRVAI 448 (729)
T KOG0481|consen 385 EKVSPIAVY-TSGKGSSAAGLTASVIRDPSTRE-FYLEGGAMVLADGGVVCIDEFDKMRED--------------DRVAI 448 (729)
T ss_pred HhcCceEEE-ecCCCcccccceeeEEecCCcce-EEEecceEEEecCCEEEeehhhccCch--------------hhhHH
Confidence 776532221 11111000111000000 00011 111122234578899999999999654 23357
Q ss_pred HHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHH
Q 005670 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~L 509 (684)
-+.||...+.|..-|..+ .++ +.+-+++++|.. .|-..+...
T Consensus 449 HEAMEQQTISIAKAGITT-------~LN-SRtSVLAAANpv--------------fGRyDd~Kt---------------- 490 (729)
T KOG0481|consen 449 HEAMEQQTISIAKAGITT-------TLN-SRTSVLAAANPV--------------FGRYDDTKT---------------- 490 (729)
T ss_pred HHHHHhhhHHHhhhccee-------eec-chhhhhhhcCCc--------------cccccccCC----------------
Confidence 788886666664444322 222 334455565522 111110000
Q ss_pred HhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchH-H----------------------HHHHHHHHHHHh
Q 005670 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK-N----------------------ALGKQYRKMFQM 566 (684)
Q Consensus 510 l~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l-~----------------------~L~kq~~~~~~~ 566 (684)
++|- -.|.|-+++|||.|+.+.+--.++....+.++. + ...++|-.. ..
T Consensus 491 -----~~dN--IDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~Y-cR 562 (729)
T KOG0481|consen 491 -----GEDN--IDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQY-CR 562 (729)
T ss_pred -----cccc--cchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHH-HH
Confidence 0010 027789999999998877765554333222221 1 112333322 22
Q ss_pred cCccccccHHHHHHHHHhcC------------------CCCCCHHHHHHHHHHHHHHHHhcC
Q 005670 567 NGVKLHFTENALRLIAKKAI------------------SKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 567 ~gi~l~~s~eAl~~La~~a~------------------~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
..+.-.++++|.+.|..+ | .-+..+|+|+.+|. +...++++
T Consensus 563 ~kc~PrLs~~AaekL~~~-yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiR--I~ESLAKm 621 (729)
T KOG0481|consen 563 LKCGPRLSAEAAEKLSSR-YVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIR--IAESLAKM 621 (729)
T ss_pred hccCCCCCHHHHHHHHHH-HhHHHHHHHHhhhcccccCCCceeHHHHHHHHH--HHHHHHhh
Confidence 345667899999988775 3 23556899998885 44444443
No 238
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=8.8e-06 Score=87.16 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=57.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-----------C--EEEEecccccccccccchhHHHHHHHHhcccchH-hhhcC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV-----------P--FVIADATTLTQARYVGEDVESILYKLLTVSDYNV-AAAQQ 396 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-----------p--fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v-~~a~~ 396 (684)
+.+||+|+.|+||+.+|+.+++.+.+ | +..++.. ..-.+ -..++.+.+..+... +....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~~i~---vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DKDLS---KSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CCcCC---HHHHHHHHHHhccCCcccCCc
Confidence 78889999999999999999999832 1 2222200 01111 234555555443321 22467
Q ss_pred cEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.|++||++|++... .+++||+.||+
T Consensus 92 KvvII~~~e~m~~~--------------a~NaLLK~LEE 116 (299)
T PRK07132 92 KILIIKNIEKTSNS--------------LLNALLKTIEE 116 (299)
T ss_pred eEEEEecccccCHH--------------HHHHHHHHhhC
Confidence 89999999999776 89999999983
No 239
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=6.1e-06 Score=87.94 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=53.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE--EEec------c--------cc---cc-cccccchhHHHHHHHHhcccch
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV--IADA------T--------TL---TQ-ARYVGEDVESILYKLLTVSDYN 390 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv--~i~~------s--------~l---~~-s~yvG~~~~~~l~~l~~~a~~~ 390 (684)
+.+||+|| +||+++|+.+|+.+.+.-- ...| . ++ .+ ...++ -..++++.......
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~---idqIR~l~~~~~~~ 99 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIK---TDTIRELVKNFSQS 99 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCC---HHHHHHHHHHHhhC
Confidence 78999996 6899999999998843210 0001 0 11 11 01112 23445544332221
Q ss_pred HhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 391 v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
-..+...|++||++|+|... .+|+||+.||+
T Consensus 100 p~~~~~kV~II~~ad~m~~~--------------AaNaLLKtLEE 130 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN--------------AANSLLKVIEE 130 (290)
T ss_pred cccCCcEEEEeehhhhcCHH--------------HHHHHHHHhcC
Confidence 22345689999999999887 89999999993
No 240
>PRK12377 putative replication protein; Provisional
Probab=98.34 E-value=1.5e-06 Score=90.70 Aligned_cols=84 Identities=17% Similarity=0.306 Sum_probs=54.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---cccccchhHHHHHHHHhcccchHhhhcCcEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~---s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 404 (684)
.+++|+||||||||+||.++++.+ +..++.++..++.. ..|.... .....++. .....+|+|||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~~------l~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQE------LCKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccc---hHHHHHHH------hcCCCEEEEcCC
Confidence 689999999999999999999998 45667777766552 0110000 00111111 124479999999
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 405 DKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
+..... +..+..|+.+++.
T Consensus 173 g~~~~s------------~~~~~~l~~ii~~ 191 (248)
T PRK12377 173 GIQRET------------KNEQVVLNQIIDR 191 (248)
T ss_pred CCCCCC------------HHHHHHHHHHHHH
Confidence 775322 1267889999983
No 241
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.34 E-value=2.6e-06 Score=85.01 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=25.4
Q ss_pred cccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHh
Q 005670 525 PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 525 PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~ 584 (684)
+++.+|+.. +.+.+++.++..+++... +... ..+.++++.++.+...
T Consensus 177 ~~~~~~~~~-~~l~~l~~~e~~~~~~~~-----------~~~~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 177 SPLFGRFSH-IELKPLSKEEAREFLKEL-----------FKEL-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp STTTT---E-EEE----HHHHHHHHHHH-----------HHCC-------HHHHHHHHHH
T ss_pred Cccccccce-EEEeeCCHHHHHHHHHHH-----------HHHh-hcccCCHHHHHHHHHH
Confidence 568899997 999999999999887652 1111 1234588888888886
No 242
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.34 E-value=5.1e-06 Score=95.61 Aligned_cols=184 Identities=21% Similarity=0.314 Sum_probs=121.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----------CCEEEEeccccccc---------ccccchh-----HHHHHHHHhc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN----------VPFVIADATTLTQA---------RYVGEDV-----ESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----------~pfv~i~~s~l~~s---------~yvG~~~-----~~~l~~l~~~ 386 (684)
..+.+.|-||||||.+++.+-+.|. .+|+.+|+..+... .+.|+.. ...+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 4788999999999999999888663 35889998877631 1122211 1112222220
Q ss_pred ccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEec
Q 005670 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~t 466 (684)
+ -.....+||+|||.|.|... -|..|+.+++- | ....+..++|+.
T Consensus 503 -~--k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fdW-----p-------------t~~~sKLvvi~I 547 (767)
T KOG1514|consen 503 -P--KPKRSTTVVLIDELDILVTR--------------SQDVLYNIFDW-----P-------------TLKNSKLVVIAI 547 (767)
T ss_pred -C--CCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhcC-----C-------------cCCCCceEEEEe
Confidence 0 12456799999999999876 57778888872 1 112345777887
Q ss_pred cCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccce-EEEccccCHHHH
Q 005670 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQL 545 (684)
Q Consensus 467 gn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLseeel 545 (684)
+|..||-+-+ |.+-.-+|++. .+.|.|++.+++
T Consensus 548 aNTmdlPEr~----------------------------------------------l~nrvsSRlg~tRi~F~pYth~qL 581 (767)
T KOG1514|consen 548 ANTMDLPERL----------------------------------------------LMNRVSSRLGLTRICFQPYTHEQL 581 (767)
T ss_pred cccccCHHHH----------------------------------------------hccchhhhccceeeecCCCCHHHH
Confidence 7766542221 11223345544 399999999999
Q ss_pred HHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhc
Q 005670 546 VQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 546 ~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
.+|+..-+. |+ -.|+.+|++.++++...-.+.+|....+++++..-+-.+
T Consensus 582 q~Ii~~RL~-------------~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~ 631 (767)
T KOG1514|consen 582 QEIISARLK-------------GL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEER 631 (767)
T ss_pred HHHHHHhhc-------------ch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhh
Confidence 999865211 22 457889999999986666777999888888877655433
No 243
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.32 E-value=9.7e-06 Score=83.78 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=49.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
..-.+.||+|||||++++.+|+.+|.+++.++|++-.. ...+..++.... ..++.+.+||++++..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~~-----~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGLA-----QSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHHH-----HHT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHHh-----hcCchhhhhhhhhhhHH
Confidence 45578999999999999999999999999999998662 233444443321 24689999999999875
No 244
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.29 E-value=3.2e-06 Score=102.88 Aligned_cols=155 Identities=22% Similarity=0.281 Sum_probs=106.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-cccccchh----HHHHHHHHhcccchHhhhcCcEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-ARYVGEDV----ESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~-s~yvG~~~----~~~l~~l~~~a~~~v~~a~~gILfIDEID 405 (684)
+++||-|.||+|||.|..++|+..|...+++|.++-++ -.++|.+. ++.+ .+..++..-+...++-|++||+.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~WVlLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGWVLLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCEEEeehhh
Confidence 68999999999999999999999999999999886441 12233221 1111 22334433344577899999999
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCC
Q 005670 406 KITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~ 484 (684)
-...+ |+.-|-..|| .....||+-...++-+ .|..+.+|-|..+ ++
T Consensus 1622 LaSQS--------------VlEGLNacLDhR~eayIPEld~~f~~H--------pnfrVFAaqNPq~------qg----- 1668 (4600)
T COG5271 1622 LASQS--------------VLEGLNACLDHRREAYIPELDKTFDVH--------PNFRVFAAQNPQD------QG----- 1668 (4600)
T ss_pred hhHHH--------------HHHHHHHHHhhccccccccccceeecc--------CCeeeeeecCchh------cC-----
Confidence 98766 8888999998 5556666544333222 2466666655321 00
Q ss_pred CCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHH
Q 005670 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN 554 (684)
Q Consensus 485 lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~ 554 (684)
-=+++++..|++||. +|.+..|+.+|+..|+.....
T Consensus 1669 ---------------------------------gGRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1669 ---------------------------------GGRKGLPKSFLNRFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ---------------------------------CCcccCCHHHhhhhh-eEEecccccchHHHHHHhhCC
Confidence 012467888999998 778899999999999876543
No 245
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.26 E-value=4.5e-06 Score=101.64 Aligned_cols=146 Identities=27% Similarity=0.386 Sum_probs=105.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-cccccc----hh------HHHHHHHHhcccchHhhhcCcEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-ARYVGE----DV------ESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~-s~yvG~----~~------~~~l~~l~~~a~~~v~~a~~gIL 399 (684)
.++|+.||+-+|||.+.+.+|++.+..|+++|..+-++ ..|+|. +. ++.+-++++ .+--|
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR---------~GyWI 959 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR---------RGYWI 959 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh---------cCcEE
Confidence 68999999999999999999999999999999886652 234442 21 122222222 34589
Q ss_pred EEecccccccccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHh
Q 005670 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~ 478 (684)
++||..-.+.. |+.+|-++|| .+...||+...+..+ ..+..+.+|-|..
T Consensus 960 VLDELNLApTD--------------VLEaLNRLLDDNRelfIPETqevV~P--------Hp~F~lFATQNpp-------- 1009 (4600)
T COG5271 960 VLDELNLAPTD--------------VLEALNRLLDDNRELFIPETQEVVVP--------HPNFRLFATQNPP-------- 1009 (4600)
T ss_pred EeeccccCcHH--------------HHHHHHHhhccccceecCCcceeecc--------CCCeeEEeecCCC--------
Confidence 99999998876 9999999997 677778876655444 4456676666633
Q ss_pred ccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhch
Q 005670 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (684)
Q Consensus 479 r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~ 552 (684)
.+|+. ++++..+|++||- -+.|.+..++++..|+..-
T Consensus 1010 ------g~YgG------------------------------RK~LSrAFRNRFl-E~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1010 ------GGYGG------------------------------RKGLSRAFRNRFL-EMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred ------ccccc------------------------------hHHHHHHHHhhhH-hhhcccCcHHHHHHHHhcc
Confidence 23322 1245667888886 5789999999999999864
No 246
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.3e-05 Score=84.03 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=56.6
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc--------------cc---c-ccccccchhHHHHHHHHhcccch
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT--------------TL---T-QARYVGEDVESILYKLLTVSDYN 390 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s--------------~l---~-~s~yvG~~~~~~l~~l~~~a~~~ 390 (684)
+++.+||+||+|+||..+|.++|+.+-+.--.-.|. ++ . .....+.+ .++++.+.....
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id---~ir~l~~~l~~~ 82 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKE---DALSIINKLNRP 82 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHH---HHHHHHHHHccC
Confidence 358999999999999999999999984310000011 00 0 01122322 233333321111
Q ss_pred -HhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 391 -VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 391 -v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+.+...|++||++|+|... +.|+||+.||+
T Consensus 83 s~e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LEE 114 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIEE 114 (261)
T ss_pred chhcCCCEEEEeccHhhhCHH--------------HHHHHHHhhcC
Confidence 12235689999999999887 99999999994
No 247
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.23 E-value=7.2e-05 Score=79.79 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=46.9
Q ss_pred HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005670 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 270 el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAra 349 (684)
.|..-..+.-||...|++.|...-. +....++. ...++||+|++|.|||++++.
T Consensus 27 RI~~i~~~rWIgY~~A~~~L~~L~~-----Ll~~P~~~---------------------Rmp~lLivG~snnGKT~Ii~r 80 (302)
T PF05621_consen 27 RIAYIRADRWIGYPRAKEALDRLEE-----LLEYPKRH---------------------RMPNLLIVGDSNNGKTMIIER 80 (302)
T ss_pred HHHHHhcCCeecCHHHHHHHHHHHH-----HHhCCccc---------------------CCCceEEecCCCCcHHHHHHH
Confidence 3555555668999999987776542 11111111 126899999999999999999
Q ss_pred HHHHhC---------CCEEEEecc
Q 005670 350 LARYVN---------VPFVIADAT 364 (684)
Q Consensus 350 LA~~l~---------~pfv~i~~s 364 (684)
+.+.-. .|++.+.+.
T Consensus 81 F~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 81 FRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred HHHHCCCCCCCCCccccEEEEecC
Confidence 987652 366666654
No 248
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=4e-06 Score=77.08 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--------CCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV--------NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l--------~~pfv~i~~s~l 366 (684)
..++++||||+|||++++.+++.+ ..+++.+++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 689999999999999999999988 567777777643
No 249
>PRK06526 transposase; Provisional
Probab=98.17 E-value=1.3e-06 Score=91.55 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=52.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 406 (684)
..+++|+||||||||+||.+|+..+ +.....+++.++...-..... ...+...+.. .....+|+|||++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-~~~~~~~l~~------l~~~dlLIIDD~g~ 170 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-AGRLQAELVK------LGRYPLLIVDEVGY 170 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-cCcHHHHHHH------hccCCEEEEccccc
Confidence 4699999999999999999998876 445555555544310000000 0011111111 12347999999998
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHc
Q 005670 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.... ..++.|+.+++
T Consensus 171 ~~~~~------------~~~~~L~~li~ 186 (254)
T PRK06526 171 IPFEP------------EAANLFFQLVS 186 (254)
T ss_pred CCCCH------------HHHHHHHHHHH
Confidence 75431 15677888886
No 250
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.13 E-value=3.4e-06 Score=72.74 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=57.8
Q ss_pred cCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 005670 540 LTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPD 612 (684)
Q Consensus 540 Lseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~ 612 (684)
|+.+++.+|+...++.+.++ +..+|+.+.++++++++|++.+++..+|||+|+++|++.+.+.+++..-
T Consensus 1 L~~~~l~~I~~~~l~~l~~~----l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il 69 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNER----LKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAIL 69 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHH----HHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH----HHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999966666544 5558999999999999999999999999999999999999999887643
No 251
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.12 E-value=1.8e-05 Score=83.63 Aligned_cols=201 Identities=16% Similarity=0.252 Sum_probs=101.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-C--EEEEecccccccccccchhHHHHHHHHhcc----cch---HhhhcCcEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV-P--FVIADATTLTQARYVGEDVESILYKLLTVS----DYN---VAAAQQGIVY 400 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-p--fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a----~~~---v~~a~~gILf 400 (684)
.++||+||+|||||.+++.+-+.+.. . ...++++..+. ...++..++.. .+. ....+..|+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 79999999999999999887665532 3 23455554331 23333333221 111 1123567999
Q ss_pred EecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcc
Q 005670 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 401 IDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~ 480 (684)
||++..-.++. -..+.....|.++|| .++..+.... .-....++.+|++.+...
T Consensus 106 iDDlN~p~~d~--------ygtq~~iElLRQ~i~--------~~g~yd~~~~-~~~~i~~i~~vaa~~p~~--------- 159 (272)
T PF12775_consen 106 IDDLNMPQPDK--------YGTQPPIELLRQLID--------YGGFYDRKKL-EWKSIEDIQFVAAMNPTG--------- 159 (272)
T ss_dssp EETTT-S---T--------TS--HHHHHHHHHHH--------CSEEECTTTT-EEEEECSEEEEEEESSTT---------
T ss_pred ecccCCCCCCC--------CCCcCHHHHHHHHHH--------hcCcccCCCc-EEEEEeeeEEEEecCCCC---------
Confidence 99999866541 112335666667777 2222332221 235667888888766211
Q ss_pred ccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHH
Q 005670 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 481 ~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~ 560 (684)
| . ..+.|-|++.|. ++.++.++.+.+..|....+....+..
T Consensus 160 -----G--r-------------------------------~~is~R~~r~f~-i~~~~~p~~~sl~~If~~il~~~l~~~ 200 (272)
T PF12775_consen 160 -----G--R-------------------------------NPISPRFLRHFN-ILNIPYPSDESLNTIFSSILQSHLKNG 200 (272)
T ss_dssp -----T-----------------------------------SHHHHHHTTEE-EEE----TCCHHHHHHHHHHHHHTCHT
T ss_pred -----C--C-------------------------------CCCChHHhhheE-EEEecCCChHHHHHHHHHHHhhhcccC
Confidence 0 0 012233445555 888999999999999876443332110
Q ss_pred HHHHHh--cCcc---ccccHHHHHHHHHhcC------CCCCCHHHHHHHHHHHHHHH
Q 005670 561 RKMFQM--NGVK---LHFTENALRLIAKKAI------SKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 561 ~~~~~~--~gi~---l~~s~eAl~~La~~a~------~~~~GAR~Lr~iIe~~l~~a 606 (684)
.+.. .+.. +..+-+..+.+.+.-. .--++.|.|-++++.++...
T Consensus 201 --~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~~~ 255 (272)
T PF12775_consen 201 --GFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILLAS 255 (272)
T ss_dssp --TSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHhcC
Confidence 0000 0000 0111222233333211 22457899999999987543
No 252
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.11 E-value=8.7e-05 Score=83.99 Aligned_cols=146 Identities=22% Similarity=0.268 Sum_probs=84.7
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHh-hhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIY-NESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAra 349 (684)
|-+.|...|.|.+.+|+.+.-.+.....+.. ++.. -...-|+||+|.|-|.|+.|.|.
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGsh---------------------lRGDINiLlvGDPSvAKSQLLRy 353 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSH---------------------LRGDINILLVGDPSVAKSQLLRY 353 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCCce---------------------eccceeEEEecCchHHHHHHHHH
Confidence 4455566799999999998877742221111 1111 01126999999999999999999
Q ss_pred HHHHhCCCEEEEecccccccccccch------h---HHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCC
Q 005670 350 LARYVNVPFVIADATTLTQARYVGED------V---ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDV 420 (684)
Q Consensus 350 LA~~l~~pfv~i~~s~l~~s~yvG~~------~---~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~ 420 (684)
+-+... ..... +.- .+.-||-. . ++.+. .+....+..||++|||+|+|..-
T Consensus 354 VLntAp--lAI~T-TGR-GSSGVGLTAAVTtD~eTGERRLE------AGAMVLADRGVVCIDEFDKMsDi---------- 413 (818)
T KOG0479|consen 354 VLNTAP--LAIAT-TGR-GSSGVGLTAAVTTDQETGERRLE------AGAMVLADRGVVCIDEFDKMSDI---------- 413 (818)
T ss_pred HHhccc--ccccc-cCC-CCCCccceeEEeeccccchhhhh------cCceEEccCceEEehhcccccch----------
Confidence 877652 21111 000 01111111 0 11111 12223467899999999999653
Q ss_pred cchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCc
Q 005670 421 SGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (684)
Q Consensus 421 ~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~ 469 (684)
---++-++||...|.|..-|....- +. .+-+++++|.
T Consensus 414 ----DRvAIHEVMEQqtVTIaKAGIHasL-------NA-RCSVlAAANP 450 (818)
T KOG0479|consen 414 ----DRVAIHEVMEQQTVTIAKAGIHASL-------NA-RCSVLAAANP 450 (818)
T ss_pred ----hHHHHHHHHhcceEEeEeccchhhh-------cc-ceeeeeecCc
Confidence 2446889999667776554433322 22 3667777774
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.10 E-value=8.3e-06 Score=85.38 Aligned_cols=70 Identities=27% Similarity=0.437 Sum_probs=47.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---cccc-cchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---ARYV-GEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~---s~yv-G~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.+++|+||||||||+||-||+..+ +.++..+...++.. ..+- |.. +..+...+ ..--+|+|||
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~-~~~l~~~l---------~~~dlLIiDD 175 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRL-EEKLLREL---------KKVDLLIIDD 175 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCch-HHHHHHHh---------hcCCEEEEec
Confidence 799999999999999999999988 56777788777651 0111 111 22222222 2336999999
Q ss_pred ccccccc
Q 005670 404 VDKITKK 410 (684)
Q Consensus 404 IDkl~~~ 410 (684)
+......
T Consensus 176 lG~~~~~ 182 (254)
T COG1484 176 IGYEPFS 182 (254)
T ss_pred ccCccCC
Confidence 9997553
No 254
>PRK08181 transposase; Validated
Probab=98.09 E-value=3.9e-06 Score=88.62 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=54.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
.+++|+||||||||+||.+++..+ +..++.+++.++.. .+..........+.+.. -....+|+|||++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~-~l~~a~~~~~~~~~l~~------l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ-KLQVARRELQLESAIAK------LDKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH-HHHHHHhCCcHHHHHHH------HhcCCEEEEeccccc
Confidence 689999999999999999999876 55677777766652 11000000001111111 123469999999987
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHc
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
... +..++.|+.+++
T Consensus 180 ~~~------------~~~~~~Lf~lin 194 (269)
T PRK08181 180 TKD------------QAETSVLFELIS 194 (269)
T ss_pred cCC------------HHHHHHHHHHHH
Confidence 543 125678888887
No 255
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.06 E-value=1e-05 Score=84.23 Aligned_cols=85 Identities=16% Similarity=0.275 Sum_probs=53.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccc--hhHHHHHHHHhcccchHhhhcCcEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGE--DVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~--~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 405 (684)
.+++|+|+||||||+||.+++..+ +..++.++..++.. .+... ........++.. .....+|+|||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~-~l~~~~~~~~~~~~~~l~~------l~~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS-AMKDTFSNSETSEEQLLND------LSNVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH-HHHHHHhhccccHHHHHHH------hccCCEEEEeCCC
Confidence 589999999999999999999998 56777777766651 11110 000001111111 1234699999998
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
..... +-....|..+++
T Consensus 173 ~~~~s------------~~~~~~l~~Ii~ 189 (244)
T PRK07952 173 VQTES------------RYEKVIINQIVD 189 (244)
T ss_pred CCCCC------------HHHHHHHHHHHH
Confidence 86422 114566788887
No 256
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.99 E-value=0.00014 Score=83.33 Aligned_cols=94 Identities=19% Similarity=0.366 Sum_probs=55.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe-ccccc-----ccccccch--------hHHHHHHH-HhcccchH----
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD-ATTLT-----QARYVGED--------VESILYKL-LTVSDYNV---- 391 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~-~s~l~-----~s~yvG~~--------~~~~l~~l-~~~a~~~v---- 391 (684)
..+||+||||||||++++.||++++..+.+.. ...+. ...|.+.. ....+.++ +..+.+..
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 57889999999999999999999987766542 22211 11122110 01223333 23333311
Q ss_pred ---hhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 392 ---AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 392 ---~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
......||+|||+-.+... +. +...+.|.+.+.
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~--------~~--~~f~~~L~~~l~ 161 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR--------DT--SRFREALRQYLR 161 (519)
T ss_pred CCCcCCCceEEEeeccccccch--------hH--HHHHHHHHHHHH
Confidence 1235789999998865443 11 346676777765
No 257
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.98 E-value=3.3e-06 Score=93.84 Aligned_cols=137 Identities=23% Similarity=0.339 Sum_probs=81.5
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHH
Q 005670 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 271 l~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraL 350 (684)
+.+.+...|.|.+++|+.|.-++...--+ .+ + ++..+. ..-||+|.|.||+.|+.|.+.+
T Consensus 336 La~SiAPEIyGheDVKKaLLLlLVGgvd~--------~~-~----------dGMKIR-GdINicLmGDPGVAKSQLLkyi 395 (721)
T KOG0482|consen 336 LAASIAPEIYGHEDVKKALLLLLVGGVDK--------SP-G----------DGMKIR-GDINICLMGDPGVAKSQLLKYI 395 (721)
T ss_pred HHHhhchhhccchHHHHHHHHHhhCCCCC--------CC-C----------CCceee-cceeEEecCCCchhHHHHHHHH
Confidence 44455556999999999998777521110 00 0 111111 1269999999999999999999
Q ss_pred HHHhCCCEEEEecccccccccccchhHHHHHHHHh----cccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 351 ARYVNVPFVIADATTLTQARYVGEDVESILYKLLT----VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 351 A~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~----~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
.+..-+..+..-- .+.-||-. ....++-+. -..+.+..|.+||-.|||+|||... --
T Consensus 396 ~rlapRgvYTTGr----GSSGVGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------------DR 456 (721)
T KOG0482|consen 396 SRLAPRGVYTTGR----GSSGVGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------------DR 456 (721)
T ss_pred HhcCcccceecCC----CCCccccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------hh
Confidence 9987443322110 01122222 111111110 1123344678899999999999764 34
Q ss_pred HHHHHHHcCceeeccCCCCc
Q 005670 427 QALLKMLEGTVVNVPEKGAR 446 (684)
Q Consensus 427 ~~LL~~LEg~~v~Ip~~g~~ 446 (684)
.++-++||...+.|..-|..
T Consensus 457 tAIHEVMEQQTISIaKAGI~ 476 (721)
T KOG0482|consen 457 TAIHEVMEQQTISIAKAGIN 476 (721)
T ss_pred HHHHHHHHhhhhhhhhhccc
Confidence 56888998777777554433
No 258
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.98 E-value=9.6e-06 Score=80.48 Aligned_cols=82 Identities=23% Similarity=0.394 Sum_probs=52.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---cccccchhHHHHHHHHhcccchHhhhcCcEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~---s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 404 (684)
.+++|+||||||||+||.++++.+ +.+...++..++.. ..+........+..+ ....+|+|||+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l----------~~~dlLilDDl 117 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL----------KRVDLLILDDL 117 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH----------HTSSCEEEETC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc----------ccccEeccccc
Confidence 699999999999999999999877 66777788776651 111111112222222 23369999999
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
...... +...+.|+.+++
T Consensus 118 G~~~~~------------~~~~~~l~~ii~ 135 (178)
T PF01695_consen 118 GYEPLS------------EWEAELLFEIID 135 (178)
T ss_dssp TSS---------------HHHHHCTHHHHH
T ss_pred ceeeec------------ccccccchhhhh
Confidence 875432 225677888887
No 259
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.88 E-value=1.9e-05 Score=85.63 Aligned_cols=85 Identities=20% Similarity=0.330 Sum_probs=53.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccc--hhHHHHHHHHhcccchHhhhcCcEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGE--DVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~--~~~~~l~~l~~~a~~~v~~a~~gILfIDEID 405 (684)
.+++|+||||||||+||.++|+.+ +..++.+++.++.. .+... +........+.. ....-+|+|||++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~-~l~~~~~~~~~~~~~~~~~------l~~~DLLIIDDlG 256 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE-ILREIRFNNDKELEEVYDL------LINCDLLIIDDLG 256 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH-HHHHHHhccchhHHHHHHH------hccCCEEEEeccC
Confidence 689999999999999999999988 55677777766541 11000 000000000110 1133699999998
Q ss_pred ccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 406 kl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
..... +..++.|+.+++
T Consensus 257 ~e~~t------------~~~~~~Lf~iin 273 (329)
T PRK06835 257 TEKIT------------EFSKSELFNLIN 273 (329)
T ss_pred CCCCC------------HHHHHHHHHHHH
Confidence 86432 126777888887
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.88 E-value=0.00015 Score=83.17 Aligned_cols=59 Identities=27% Similarity=0.439 Sum_probs=43.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC-CC
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-VP 357 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-~p 357 (684)
++|++++|+++.+.+.....++ .. ....++|+||||+|||+||+.||+.+. .|
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl----~~----------------------~~~IL~LvGPpG~GKSsLa~~la~~le~~~ 131 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGL----EE----------------------KKQILYLLGPVGGGKSSLAERLKSLMERVP 131 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhc----CC----------------------CCceEEEecCCCCCchHHHHHHHHHHHhCc
Confidence 6999999999998885322211 10 126899999999999999999999983 46
Q ss_pred EEEEec
Q 005670 358 FVIADA 363 (684)
Q Consensus 358 fv~i~~ 363 (684)
++.+..
T Consensus 132 ~Y~~kg 137 (644)
T PRK15455 132 IYVLKA 137 (644)
T ss_pred ceeecC
Confidence 555543
No 261
>PRK06921 hypothetical protein; Provisional
Probab=97.86 E-value=2.1e-05 Score=82.92 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=29.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~s~l 366 (684)
.+++|+||||||||+||.++|+.+ +..++.++..++
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l 157 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG 157 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH
Confidence 689999999999999999999987 345566665444
No 262
>PRK09183 transposase/IS protein; Provisional
Probab=97.86 E-value=2.1e-05 Score=82.62 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=52.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 406 (684)
..+++|+||||||||+||.+++..+ +..+..+++.++.. .+........+...+... .....+++|||++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~-~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdlg~ 175 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL-QLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEIGY 175 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH-HHHHHHHCCcHHHHHHHH-----hcCCCEEEEccccc
Confidence 3689999999999999999997765 45566666655541 111000000111222110 12446999999988
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHc
Q 005670 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
..... ..++.|+.+++
T Consensus 176 ~~~~~------------~~~~~lf~li~ 191 (259)
T PRK09183 176 LPFSQ------------EEANLFFQVIA 191 (259)
T ss_pred CCCCh------------HHHHHHHHHHH
Confidence 65431 15667888886
No 263
>PF05729 NACHT: NACHT domain
Probab=97.84 E-value=0.00026 Score=67.05 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=43.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCC--------C-EEEEecccccccccccchhHHHHHHHHhccc--------chHhhh
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNV--------P-FVIADATTLTQARYVGEDVESILYKLLTVSD--------YNVAAA 394 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~--------p-fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~--------~~v~~a 394 (684)
.++++|+||+|||++++.++..+.. + ++.+.+.+....... ......+........ ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 5789999999999999999987721 1 223444443321111 011112211111111 011234
Q ss_pred cCcEEEEecccccccc
Q 005670 395 QQGIVYIDEVDKITKK 410 (684)
Q Consensus 395 ~~gILfIDEIDkl~~~ 410 (684)
...+|+||-+|.+...
T Consensus 81 ~~~llilDglDE~~~~ 96 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQ 96 (166)
T ss_pred CceEEEEechHhcccc
Confidence 6689999999999764
No 264
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.80 E-value=7.9e-05 Score=67.61 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=46.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~ 412 (684)
|.|+||||+|||++|+.|++.+...+-......+ |........+.. + ..+.++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v----y~~~~~~~~w~g------Y----~~q~vvi~DD~~~~~~~-- 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV----YTRNPGDKFWDG------Y----QGQPVVIIDDFGQDNDG-- 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE----EeCCCccchhhc------c----CCCcEEEEeecCccccc--
Confidence 5799999999999999999888422211100000 100000111110 1 13469999999987542
Q ss_pred cccCCCCCcchHHHHHHHHHHcCceee
Q 005670 413 SLNISRDVSGEGVQQALLKMLEGTVVN 439 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~ 439 (684)
. .......|+++++...+.
T Consensus 65 -------~-~~~~~~~l~~l~s~~~~~ 83 (107)
T PF00910_consen 65 -------Y-NYSDESELIRLISSNPFQ 83 (107)
T ss_pred -------c-chHHHHHHHHHHhcCCcc
Confidence 0 112566788888754444
No 265
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.63 E-value=0.00099 Score=71.06 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=28.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCC------EEEEecc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~p------fv~i~~s 364 (684)
+..+.|.|+=|+|||++.+.+-+.+... ++.+|+-
T Consensus 20 ~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w 60 (325)
T PF07693_consen 20 PFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAW 60 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccc
Confidence 4789999999999999999998888433 5556554
No 266
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00057 Score=77.91 Aligned_cols=97 Identities=33% Similarity=0.572 Sum_probs=76.3
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 408 (684)
++..++++||||+|||+++++++.. +..+..++..+.. ++|.|.. +..++..+..+.. ..++++++||+|.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEK----LAPSIIFIDEIDALA 89 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHH----hCCCeEeechhhhcc
Confidence 3589999999999999999999999 6666667777766 7888887 6777777776553 356999999999999
Q ss_pred cccccccCCCCCcchHHHHHHHHHHcC
Q 005670 409 KKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
+.+.. ........+.+.|+..+++
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~ 113 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDG 113 (494)
T ss_pred cCccc---cccchhhHHHHHHHHhccc
Confidence 88655 2333445588889999884
No 267
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.60 E-value=0.0001 Score=79.33 Aligned_cols=68 Identities=13% Similarity=0.298 Sum_probs=44.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccccc---ccchhHHHHHHHHhcccchHhhhcCcEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARY---VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~y---vG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 404 (684)
.+++|+||+|||||+||.++|+.+ +.+...+.+.++.. .+ .+.. .+...+.. -....+|+|||+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~-~lk~~~~~~---~~~~~l~~------l~~~dlLiIDDi 226 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR-ELKNSISDG---SVKEKIDA------VKEAPVLMLDDI 226 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH-HHHHHHhcC---cHHHHHHH------hcCCCEEEEecC
Confidence 689999999999999999999998 56666677665541 11 0100 01111111 123469999999
Q ss_pred cccc
Q 005670 405 DKIT 408 (684)
Q Consensus 405 Dkl~ 408 (684)
..-.
T Consensus 227 G~e~ 230 (306)
T PRK08939 227 GAEQ 230 (306)
T ss_pred CCcc
Confidence 8754
No 268
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.59 E-value=9.9e-05 Score=71.55 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=37.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC-
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p- 357 (684)
.+|.++..+.|...+. ... ...+.+++++|++|+|||++.+.+...+..+
T Consensus 2 fvgR~~e~~~l~~~l~-~~~----------------------------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ----------------------------SGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS----------------------------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH-HHH----------------------------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4888988888887772 000 0113799999999999999999887777332
Q ss_pred --EEEEecccc
Q 005670 358 --FVIADATTL 366 (684)
Q Consensus 358 --fv~i~~s~l 366 (684)
++.+++...
T Consensus 53 ~~~~~~~~~~~ 63 (185)
T PF13191_consen 53 GYVISINCDDS 63 (185)
T ss_dssp --EEEEEEETT
T ss_pred CEEEEEEEecc
Confidence 677766655
No 269
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.0025 Score=66.55 Aligned_cols=68 Identities=25% Similarity=0.356 Sum_probs=46.3
Q ss_pred cccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCc-cccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 525 PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGV-KLHFTENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 525 PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi-~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
.++..|+++.+.++|+++++....++.. ++..+. .--++++++..+.... +++-++|+.++
T Consensus 185 ~e~~~R~~ir~~l~P~~~~~t~~yl~~~-----------Le~a~~~~~l~~~~a~~~i~~~s-------qg~P~lin~~~ 246 (269)
T COG3267 185 RELEQRIDIRIELPPLTEAETGLYLRHR-----------LEGAGLPEPLFSDDALLLIHEAS-------QGIPRLINNLA 246 (269)
T ss_pred HhhhheEEEEEecCCcChHHHHHHHHHH-----------HhccCCCcccCChhHHHHHHHHh-------ccchHHHHHHH
Confidence 4678999977999999999888877652 121122 3348999999998864 22555666666
Q ss_pred HHHHhcC
Q 005670 604 MDAMYEI 610 (684)
Q Consensus 604 ~~al~e~ 610 (684)
..++-..
T Consensus 247 ~~Al~~a 253 (269)
T COG3267 247 TLALDAA 253 (269)
T ss_pred HHHHHHH
Confidence 6655433
No 270
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.42 E-value=0.00013 Score=66.33 Aligned_cols=31 Identities=45% Similarity=0.761 Sum_probs=27.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
|++.|+||+|||++|+.||+.++.+++..|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999877765554
No 271
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.40 E-value=0.00068 Score=86.09 Aligned_cols=107 Identities=26% Similarity=0.295 Sum_probs=72.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-cccccchhHHHH-HHHHhcccchHhhhcCcEEEEecccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-ARYVGEDVESIL-YKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~-s~yvG~~~~~~l-~~l~~~a~~~v~~a~~gILfIDEIDkl~ 408 (684)
..+||.||+|+|||.+++-+|+..+..+++++-.+.+. ..|+|....... .-.|+...-.-+.-.+..+|+||+...+
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 58999999999999999999999999999998776552 234441100000 0000000000112356899999999987
Q ss_pred cccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCC
Q 005670 409 KKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRG 451 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g 451 (684)
.. ++.+|.++++ .+.+.+|+..++...+.
T Consensus 521 ~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~ 550 (1856)
T KOG1808|consen 521 HD--------------VLEALNRLLDDNRELFIPETQRLVKAHP 550 (1856)
T ss_pred hH--------------HHHHHHhhhhhhccccccccceeeccCc
Confidence 76 9999999998 47777776665554444
No 272
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.39 E-value=0.0019 Score=70.42 Aligned_cols=52 Identities=31% Similarity=0.337 Sum_probs=39.5
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+.+.|.++++.++...+. ...++. ...+..++|.||+|+|||++++.|-+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk----~AA~g~----------------------~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFK----SAAQGL----------------------EERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHH----HHHhcc----------------------CccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999988764 111111 1224789999999999999999999887
No 273
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.39 E-value=0.00024 Score=66.63 Aligned_cols=32 Identities=50% Similarity=0.639 Sum_probs=25.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
++++||||+|||+++..++..+ +.+.+.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999999998887 3455555543
No 274
>PHA00729 NTP-binding motif containing protein
Probab=97.34 E-value=0.0004 Score=71.59 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.+++|+|+||||||++|.++++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999875
No 275
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0015 Score=78.55 Aligned_cols=94 Identities=23% Similarity=0.315 Sum_probs=64.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----------CCEEEEeccccc-ccccccchhHHHHHHHHhcccchHhhhcCcEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN----------VPFVIADATTLT-QARYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----------~pfv~i~~s~l~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gIL 399 (684)
.|-+|+|+||+|||.++.-+|+.+. ..++.++...+. .+.+.|+- +..+..+.+.... ...+-||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~-E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF-EERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH-HHHHHHHHHHHhc---CCCcEEE
Confidence 6889999999999999999998872 346777776554 34566654 6778887765332 2356799
Q ss_pred EEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
||||++-+...... .....+.+.|..++.
T Consensus 285 figelh~lvg~g~~------~~~~d~~nlLkp~L~ 313 (898)
T KOG1051|consen 285 FLGELHWLVGSGSN------YGAIDAANLLKPLLA 313 (898)
T ss_pred EecceeeeecCCCc------chHHHHHHhhHHHHh
Confidence 99999999875222 112235665555554
No 276
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.32 E-value=0.00051 Score=67.67 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh
Q 005670 332 NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 277
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.31 E-value=0.00023 Score=68.45 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=29.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
+..++|+|+||+|||++|+.+|+.++.+|+..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 368999999999999999999999999887544
No 278
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.30 E-value=0.011 Score=66.14 Aligned_cols=161 Identities=19% Similarity=0.301 Sum_probs=92.7
Q ss_pred hcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHH
Q 005670 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIE 473 (684)
Q Consensus 394 a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe 473 (684)
.++-+|+|||++.+-+- ..+..++...+.|+++++... +| ...++.||++++..
T Consensus 238 y~GLlI~lDE~e~l~kl------~~~~~R~~~ye~lr~lidd~~-----~G------------~~~gL~~~~~gTPe--- 291 (416)
T PF10923_consen 238 YKGLLILLDELENLYKL------RNDQAREKNYEALRQLIDDID-----QG------------RAPGLYFVFAGTPE--- 291 (416)
T ss_pred CCceEEEEechHHHHhc------CChHHHHHHHHHHHHHHHHHh-----cC------------CCCceEEEEeeCHH---
Confidence 34569999999998654 234446668999999997210 11 24468888888732
Q ss_pred HHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchH
Q 005670 474 KTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 474 ~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l 553 (684)
++. +..-| -.+++...+.|-.... -.+.+.+-...+|.+.+|+.+++..++.+
T Consensus 292 -f~e----D~rrG------------v~sY~AL~~RL~~~~~--------~~~~~~n~~~pvIrL~~l~~eel~~l~~k-- 344 (416)
T PF10923_consen 292 -FFE----DGRRG------------VYSYEALAQRLAEEFF--------ADDGFDNLRAPVIRLQPLTPEELLELLEK-- 344 (416)
T ss_pred -Hhh----Ccccc------------ccccHHHHHHHhcccc--------ccccccCccCceecCCCCCHHHHHHHHHH--
Confidence 221 11111 1122232222222111 13566666777999999999999988765
Q ss_pred HHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCH--HHHHHHHHHHH--HHHHhcCCC
Q 005670 554 NALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA--RGLRSLLENIL--MDAMYEIPD 612 (684)
Q Consensus 554 ~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GA--R~Lr~iIe~~l--~~al~e~~~ 612 (684)
+..-|.. ..+....++++.+..+++..+..-+|. +.-|.+|...+ ++.+.+.|+
T Consensus 345 --lr~i~a~---~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~Ld~~~q~p~ 402 (416)
T PF10923_consen 345 --LRDIYAE---AYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDVLDILEQNPD 402 (416)
T ss_pred --HHHHHHh---hCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHHHHHHHHCCC
Confidence 2222222 134467899999999999855443332 22244454443 334444443
No 279
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.25 E-value=0.00093 Score=67.19 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=47.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---cccccchhHHHHHHHHhcccchH-----hhhcCcEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---ARYVGEDVESILYKLLTVSDYNV-----AAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~---s~yvG~~~~~~l~~l~~~a~~~v-----~~a~~gIL 399 (684)
...++.||||||||++++.+++.+ +..++.+..+.-.. ..-.|.. ...+..++....... ......+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEE
Confidence 467889999999999999998877 34455444332110 0000000 011222222211100 02345799
Q ss_pred EEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+|||+..+... ....|++.+.
T Consensus 98 iVDEasmv~~~--------------~~~~ll~~~~ 118 (196)
T PF13604_consen 98 IVDEASMVDSR--------------QLARLLRLAK 118 (196)
T ss_dssp EESSGGG-BHH--------------HHHHHHHHS-
T ss_pred EEecccccCHH--------------HHHHHHHHHH
Confidence 99999999765 6666777665
No 280
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.16 E-value=0.0045 Score=67.78 Aligned_cols=64 Identities=25% Similarity=0.237 Sum_probs=51.1
Q ss_pred hhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005670 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 274 ~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.|...|.+.+..++.|...+.+.- ..-|.++.|+|.+|||||.+.+++-+.
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~~-----------------------------~~~PS~~~iyG~sgTGKT~~~r~~l~~ 53 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNNS-----------------------------CTIPSIVHIYGHSGTGKTYLVRQLLRK 53 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCCC-----------------------------cccceeEEEeccCCCchhHHHHHHHhh
Confidence 355668899999999988874110 012478899999999999999999999
Q ss_pred hCCCEEEEecccc
Q 005670 354 VNVPFVIADATTL 366 (684)
Q Consensus 354 l~~pfv~i~~s~l 366 (684)
++.+.+.++|-+.
T Consensus 54 ~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 54 LNLENVWLNCVEC 66 (438)
T ss_pred cCCcceeeehHHh
Confidence 9999999988754
No 281
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.00093 Score=65.72 Aligned_cols=43 Identities=30% Similarity=0.530 Sum_probs=34.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccch
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGED 375 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~ 375 (684)
.++++|+||+|||++|+.|++.++.+++..|.-... ++|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence 479999999999999999999999998887765443 3454444
No 282
>PHA02624 large T antigen; Provisional
Probab=97.11 E-value=0.0034 Score=72.75 Aligned_cols=87 Identities=25% Similarity=0.299 Sum_probs=54.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
..+||+||||||||+++.+|.+.++...+.+++..-. ...+..-. ....+++||++..-.-.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k---------s~FwL~pl---------~D~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK---------LNFELGCA---------IDQFMVVFEDVKGQPAD 493 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch---------hHHHhhhh---------hhceEEEeeeccccccc
Confidence 6899999999999999999999997767777754422 11111111 23368999998654331
Q ss_pred cccccCCCCCcchHH--HHHHHHHHcCc-eeec
Q 005670 411 AESLNISRDVSGEGV--QQALLKMLEGT-VVNV 440 (684)
Q Consensus 411 r~~~~~~~d~~~e~v--q~~LL~~LEg~-~v~I 440 (684)
...- ..|..+ ..-|...|||. .|++
T Consensus 494 ~~~L-----p~G~~~dNl~~lRn~LDG~V~v~l 521 (647)
T PHA02624 494 NKDL-----PSGQGMNNLDNLRDYLDGSVPVNL 521 (647)
T ss_pred cccC-----CcccccchhhHHHhhcCCCCcccc
Confidence 1100 001112 36788999987 6655
No 283
>PRK13947 shikimate kinase; Provisional
Probab=97.11 E-value=0.00047 Score=66.81 Aligned_cols=32 Identities=38% Similarity=0.596 Sum_probs=29.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
+++|.|+||+|||++|+.+|+.++.+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 79999999999999999999999999976553
No 284
>PRK08118 topology modulation protein; Reviewed
Probab=97.08 E-value=0.00048 Score=67.55 Aligned_cols=33 Identities=42% Similarity=0.696 Sum_probs=29.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
..|+++||||+|||++|+.|++.++.+++.+|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 368999999999999999999999999887774
No 285
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.05 E-value=0.019 Score=65.57 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
+.+||+||+|||||+..+.|+++++..++.-.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 67889999999999999999999988776554
No 286
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.05 E-value=0.0035 Score=69.14 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.7
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
++.++.|||++|+|||+|.-.+...+..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 3589999999999999999999888743
No 287
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.04 E-value=0.0016 Score=72.78 Aligned_cols=101 Identities=22% Similarity=0.350 Sum_probs=60.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH--h-CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY--V-NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~--l-~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
.|+++.||+|||||++|.+++.. + ..-| +++ ..++..+-....+. -+..-+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG~f--~T~-------------a~Lf~~L~~~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISGGT--ITV-------------AKLFYNISTRQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcCCc--CcH-------------HHHHHHHHHHHHhh--hccCCEEEEEcCCCC
Confidence 79999999999999999998776 2 1111 122 22222222211111 124479999999997
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcc
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~ 470 (684)
+.... ....+.|...|+...+. +|. ..-..++-+++.||..
T Consensus 273 p~~~~----------~~~v~imK~yMesg~fs----------RG~--~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 273 KFAKP----------KELIGILKNYMESGSFT----------RGD--ETKSSDASFVFLGNVP 313 (449)
T ss_pred cCCch----------HHHHHHHHHHHHhCcee----------ccc--eeeeeeeEEEEEcccC
Confidence 65421 12678888889832222 122 2234567778888854
No 288
>PRK10536 hypothetical protein; Provisional
Probab=97.00 E-value=0.0028 Score=66.67 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..++++||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999884
No 289
>PRK03839 putative kinase; Provisional
Probab=96.99 E-value=0.00066 Score=66.68 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=27.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.++|+|+||+|||++++.+|+.++.+|+..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999886544
No 290
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.99 E-value=0.00071 Score=63.98 Aligned_cols=31 Identities=45% Similarity=0.760 Sum_probs=28.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
+++|+|+||+|||++|+.+|+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4799999999999999999999999887555
No 291
>PHA02774 E1; Provisional
Probab=96.98 E-value=0.0043 Score=71.59 Aligned_cols=76 Identities=18% Similarity=0.395 Sum_probs=50.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE-EecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI-ADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~-i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
..++|+||||||||++|-+|++.++...+. +|...- -| ++.+ ....|++|||+-.-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~---Fw--------Lqpl----------~d~ki~vlDD~t~~~w 493 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH---FW--------LQPL----------ADAKIALLDDATHPCW 493 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccc---cc--------cchh----------ccCCEEEEecCcchHH
Confidence 689999999999999999999999654433 553210 11 1111 1235999999932211
Q ss_pred ccccccCCCCCcchHHHHHHHHHHcCceeec
Q 005670 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~I 440 (684)
. -+...|..+|+|..+.|
T Consensus 494 ~-------------y~d~~Lrn~LdG~~v~l 511 (613)
T PHA02774 494 D-------------YIDTYLRNALDGNPVSI 511 (613)
T ss_pred H-------------HHHHHHHHHcCCCccee
Confidence 1 15557888999987776
No 292
>PRK00625 shikimate kinase; Provisional
Probab=96.97 E-value=0.00075 Score=66.83 Aligned_cols=31 Identities=39% Similarity=0.683 Sum_probs=28.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
+|+|+|.||+|||++++.+|+.++.+|+.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 6899999999999999999999999997665
No 293
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.95 E-value=0.1 Score=59.16 Aligned_cols=38 Identities=39% Similarity=0.558 Sum_probs=30.1
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l 366 (684)
.|..++|+|++|+|||+++..+|..+ +.....+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 35899999999999999999999887 445555665544
No 294
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.91 E-value=0.0078 Score=67.16 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=44.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
.++++||.+||||++++.+.+.+...++.++..++.... .......+........ ....||||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~~~~~~-----~~~yifLDEIq~v~~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYIELKER-----EKSYIFLDEIQNVPD 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHHHhhcc-----CCceEEEecccCchh
Confidence 789999999999999999988885556666655543111 1111222222222111 447999999999753
No 295
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.91 E-value=0.0017 Score=71.85 Aligned_cols=79 Identities=13% Similarity=0.281 Sum_probs=47.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC-----EEEEecccc---------------cccccccchhHHHHH---HHHhcc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP-----FVIADATTL---------------TQARYVGEDVESILY---KLLTVS 387 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p-----fv~i~~s~l---------------~~s~yvG~~~~~~l~---~l~~~a 387 (684)
...+++||||||||+||+.|++.+... .+.+-..+. .-+.+.. ..+..++ ..+..+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~-~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE-PAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC-CHHHHHHHHHHHHHHH
Confidence 567999999999999999999887431 111111111 0011111 1122222 344445
Q ss_pred cchHhhhcCcEEEEecccccccc
Q 005670 388 DYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 388 ~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
.+........+||||||+++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHH
Confidence 55555567889999999998764
No 296
>PRK04296 thymidine kinase; Provisional
Probab=96.89 E-value=0.0033 Score=62.92 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.-.|++||+|+|||+++..++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999998877765
No 297
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.87 E-value=0.00061 Score=63.64 Aligned_cols=26 Identities=50% Similarity=0.773 Sum_probs=23.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
++++||||+|||++|+.+++.++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 78999999999999999999997333
No 298
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.86 E-value=0.0076 Score=62.93 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+.|+|++|+|||+||+.+++.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEEcCCcCCcceeeeecccc
Confidence 78999999999999999999977
No 299
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.0062 Score=62.88 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=46.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--------CCEEEEecc-cccccccccchhHHHHH--HHHhccc------chHhh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN--------VPFVIADAT-TLTQARYVGEDVESILY--KLLTVSD------YNVAA 393 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~--------~pfv~i~~s-~l~~s~yvG~~~~~~l~--~l~~~a~------~~v~~ 393 (684)
.+.|+.||||||||++.|-||+.+. .....+|-. ++. ....|...-..-+ +.+...+ ..++.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa-g~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA-GCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh-ccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 6899999999999999999999883 235566644 333 3444432111100 1111110 11345
Q ss_pred hcCcEEEEeccccc
Q 005670 394 AQQGIVYIDEVDKI 407 (684)
Q Consensus 394 a~~gILfIDEIDkl 407 (684)
..|-|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 67889999999885
No 300
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.85 E-value=0.0012 Score=67.95 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=41.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccccccc-----ccch---hHHHHHHHHhcccchHhhhcCcEEEE
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARY-----VGED---VESILYKLLTVSDYNVAAAQQGIVYI 401 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~y-----vG~~---~~~~l~~l~~~a~~~v~~a~~gILfI 401 (684)
+..+||||+||+|||++|+.++.. .-++..|.+.-.-.+. +-.+ ....+.+.+..... ..+..-+|+|
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~--~~~~ydtVVI 87 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNI--QAVKYDNIVI 87 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHh--ccccCCEEEE
Confidence 467999999999999999998631 2244455432110000 0000 01122222221111 1234579999
Q ss_pred eccccccc
Q 005670 402 DEVDKITK 409 (684)
Q Consensus 402 DEIDkl~~ 409 (684)
|.|+.+-.
T Consensus 88 DsI~~l~~ 95 (220)
T TIGR01618 88 DNISALQN 95 (220)
T ss_pred ecHHHHHH
Confidence 99999865
No 301
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.80 E-value=0.0022 Score=67.13 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
..++|+||+|+|||++++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 68899999999999999999988854
No 302
>PRK13948 shikimate kinase; Provisional
Probab=96.79 E-value=0.0015 Score=65.31 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.0
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
++.+++|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 3589999999999999999999999999998665
No 303
>PRK14532 adenylate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=65.19 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=27.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
+++|.||||+|||++|+.||+.++.+++ +..++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHH
Confidence 5899999999999999999999986664 44443
No 304
>PRK06217 hypothetical protein; Validated
Probab=96.78 E-value=0.0013 Score=64.98 Aligned_cols=32 Identities=34% Similarity=0.583 Sum_probs=28.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..|+|.|+||+|||++|++|++.++.+++..|
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 35899999999999999999999998887655
No 305
>PRK13949 shikimate kinase; Provisional
Probab=96.75 E-value=0.0013 Score=64.66 Aligned_cols=32 Identities=44% Similarity=0.682 Sum_probs=29.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..++|+|+||+|||++++.+|+.++.+|+..|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999987766
No 306
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.003 Score=61.86 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.++|+||+|||+++..+|+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 689999999999999999999888
No 307
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0013 Score=63.49 Aligned_cols=36 Identities=33% Similarity=0.616 Sum_probs=30.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
..++|++|-||||||+++..||..++.++ ++++++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~--i~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEY--IEISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCce--EehhhHH
Confidence 36999999999999999999999998777 4555555
No 308
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.68 E-value=0.19 Score=56.68 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=29.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~ 365 (684)
+..++|+|++|+||||++..+|..+ +.....+++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 4789999999999999999999877 55555566644
No 309
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.67 E-value=0.0038 Score=60.93 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=23.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
+|+.||||||||+++..++... +.+.+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999998876654 445555544
No 310
>PRK14974 cell division protein FtsY; Provisional
Probab=96.67 E-value=0.0089 Score=65.29 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=27.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
+..++|+||||+|||+++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4789999999999999998888876 3344445544
No 311
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0014 Score=64.79 Aligned_cols=32 Identities=41% Similarity=0.778 Sum_probs=29.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.+++|+|++|+|||++.+++|+.++.+|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 58999999999999999999999999997555
No 312
>PRK14530 adenylate kinase; Provisional
Probab=96.66 E-value=0.0019 Score=65.57 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|.||||+|||++|+.||+.++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4799999999999999999999998776533
No 313
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.66 E-value=0.0016 Score=61.79 Aligned_cols=28 Identities=43% Similarity=0.765 Sum_probs=24.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
++|.|+||+|||++|+.+++.++.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
No 314
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.65 E-value=0.0017 Score=63.62 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
++++||||+|||++|+.||+.++. ..+++.++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 689999999999999999999975 445555443
No 315
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.65 E-value=0.0018 Score=60.61 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=27.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
+.+.|+||+|||++|+.||+.++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987665
No 316
>PRK14531 adenylate kinase; Provisional
Probab=96.61 E-value=0.0021 Score=63.56 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..++++||||+|||++++.||+.++.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 579999999999999999999999877654
No 317
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.61 E-value=0.0077 Score=60.80 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|+||+|+|||+.+-.||..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 689999999999999888887776
No 318
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.59 E-value=0.0023 Score=62.97 Aligned_cols=33 Identities=39% Similarity=0.738 Sum_probs=30.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
.+++|.|++|+|||++++.+|+.++.+|+..|.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 689999999999999999999999999877664
No 319
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.59 E-value=0.0023 Score=62.10 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=29.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.+++|+|++|+|||++|+.+|+.++.+|+..|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999997655
No 320
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.58 E-value=0.0017 Score=62.52 Aligned_cols=28 Identities=39% Similarity=0.661 Sum_probs=24.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
++|.||+|+|||++|+.+++.++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999876653
No 321
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.58 E-value=0.0019 Score=63.53 Aligned_cols=28 Identities=46% Similarity=0.762 Sum_probs=25.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
|+++|+||+|||++|+.||+.++.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7999999999999999999999766644
No 322
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.57 E-value=0.07 Score=55.37 Aligned_cols=34 Identities=32% Similarity=0.585 Sum_probs=27.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l 366 (684)
|+|+|+||+|||++|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999988 345666655433
No 323
>PRK13946 shikimate kinase; Provisional
Probab=96.55 E-value=0.0021 Score=63.77 Aligned_cols=34 Identities=35% Similarity=0.691 Sum_probs=30.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
+..|+|+|.+|+|||++++.+|+.++.+|+..|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 3689999999999999999999999999976663
No 324
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.54 E-value=0.002 Score=63.11 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
..++|.|+||+|||++|+.+++.++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 5789999999999999999999998777765543
No 325
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.023 Score=59.35 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=57.2
Q ss_pred ceEEEEccCC-CcHHHHHHHHHHHhCC---------CEEEEecccc--cccccccchhHHHHHHHHhcccchHhhhcCcE
Q 005670 331 SNILLMGPTG-SGKTLLAKTLARYVNV---------PFVIADATTL--TQARYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPPG-TGKT~LAraLA~~l~~---------pfv~i~~s~l--~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gI 398 (684)
+.+||.|..+ ++|..++..+++.+.. .+..+....- .....++.+ .++++.+........+...|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~Id---qIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIE---QIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHH---HHHHHHHHHhhCcccCCcEE
Confidence 7899999998 9999999999888733 1333322110 001233433 34444332211112346689
Q ss_pred EEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 399 LfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
++||++|+|... +.|+||+.||+
T Consensus 93 iII~~ae~mt~~--------------AANALLKtLEE 115 (263)
T PRK06581 93 AIIYSAELMNLN--------------AANSCLKILED 115 (263)
T ss_pred EEEechHHhCHH--------------HHHHHHHhhcC
Confidence 999999999887 99999999994
No 326
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.49 E-value=0.0049 Score=66.39 Aligned_cols=32 Identities=41% Similarity=0.664 Sum_probs=29.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..|+|+|.+|+|||++++.+|+.++.+|+..|
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 78999999999999999999999999998554
No 327
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.016 Score=64.60 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=22.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+..++|+||+|+|||+++..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 328
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.44 E-value=0.007 Score=67.34 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=46.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------EEEEecc---cc---cc-------cccccchhH---HHHHHHHhccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT---TL---TQ-------ARYVGEDVE---SILYKLLTVSD 388 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------fv~i~~s---~l---~~-------s~yvG~~~~---~~l~~l~~~a~ 388 (684)
..++++||||+|||++++.+++.+... ++.+... +. .. ..-.+.... .....+...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 578999999999999999999987432 2111100 00 00 000111111 11223333444
Q ss_pred chHhhhcCcEEEEecccccccc
Q 005670 389 YNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 389 ~~v~~a~~gILfIDEIDkl~~~ 410 (684)
.........||||||++++...
T Consensus 249 ~~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHcCCCeEEEEEChhHHHHH
Confidence 4444556789999999998763
No 329
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.40 E-value=0.0032 Score=65.13 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..++|.||||+|||++|+.||+.++.+++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999999987775443
No 330
>PF14516 AAA_35: AAA-like domain
Probab=96.37 E-value=0.031 Score=60.84 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=30.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~ 367 (684)
..+.+.||..+|||++...+.+.+ +...+.+|+..+.
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 688999999999999998887776 5667778877653
No 331
>PRK06762 hypothetical protein; Provisional
Probab=96.35 E-value=0.0037 Score=60.42 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~ 365 (684)
.-++|+|+||+|||++|+.+++.++...+.++...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~ 37 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV 37 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH
Confidence 57899999999999999999999855555555433
No 332
>PRK06547 hypothetical protein; Provisional
Probab=96.35 E-value=0.0037 Score=61.86 Aligned_cols=32 Identities=41% Similarity=0.516 Sum_probs=28.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..|++.|++|+|||++|+.+++.++.+++..|
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 67888999999999999999999988776544
No 333
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.33 E-value=0.0076 Score=58.90 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=32.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~ 367 (684)
..|.|+|.||+|||++|+++.+.+ +.+.+.+|+..+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 688999999999999999999988 6788889887665
No 334
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.31 E-value=0.011 Score=59.61 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.-+++.||+|+|||+++++++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999988884
No 335
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0036 Score=62.28 Aligned_cols=33 Identities=39% Similarity=0.673 Sum_probs=26.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
.+++.||||+||||+|+.||+.+ ++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHH
Confidence 58999999999999999999996 4555554443
No 336
>PHA01747 putative ATP-dependent protease
Probab=96.30 E-value=0.018 Score=63.13 Aligned_cols=83 Identities=20% Similarity=0.136 Sum_probs=47.4
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 408 (684)
.+-|++=.||.|||||++-+-+....+ +.. +....+.+..+. ..-....+.+ ...-+|++|||..+.
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp--~~i-SGG~~TvA~LFy--------N~~t~~~GLV--g~~D~VaFDEVa~i~ 255 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFN--FRY-YTEPPTYANLVY--------DAKTNALGLV--FLSNGLIFDEIQTWK 255 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCC--cee-eCCCCchHHheE--------ecCCCceeEE--eeccEEEEEcccccc
Confidence 347899999999999999988876442 222 222211111111 1111111111 122589999999987
Q ss_pred cccccccCCCCCcchHHHHHHHHHHc
Q 005670 409 KKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.+. ...+.+.|...|+
T Consensus 256 f~~----------~kdiv~IMKdYMe 271 (425)
T PHA01747 256 DSN----------MRAINSTLSTGME 271 (425)
T ss_pred CCC----------HHHHHHHHHHHhh
Confidence 431 0127888888898
No 337
>PRK14528 adenylate kinase; Provisional
Probab=96.28 E-value=0.0042 Score=61.89 Aligned_cols=30 Identities=40% Similarity=0.722 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..+++.||||+|||++|+.+++.++.+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 368999999999999999999999877654
No 338
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.21 E-value=0.0038 Score=56.70 Aligned_cols=22 Identities=50% Similarity=0.607 Sum_probs=20.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l 354 (684)
|+|.|+||||||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 339
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.20 E-value=0.012 Score=71.43 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=49.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhH------HHHHHHHhc--ccchHhhhcCcEEEEec
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVE------SILYKLLTV--SDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~------~~l~~l~~~--a~~~v~~a~~gILfIDE 403 (684)
.+|+.||||+|||+.|.+.++.++..++..|+++.. +++...... ..+...+.. ++.. ......||++||
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R-Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~-~~~~~~vil~de 436 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR-SKKELLNKLGNATSSHSIKGSKKKKGNRQS-LNSDHFLILMDE 436 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc-cccHHHhhhhccccccchhhhhcccccccc-cccceeEEEEec
Confidence 479999999999999999999999999999998766 333322110 001111100 0000 012345999999
Q ss_pred cccccc
Q 005670 404 VDKITK 409 (684)
Q Consensus 404 IDkl~~ 409 (684)
+|-+..
T Consensus 437 vD~~~~ 442 (871)
T KOG1968|consen 437 VDGMFG 442 (871)
T ss_pred cccccc
Confidence 999865
No 340
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.20 E-value=0.012 Score=56.43 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=27.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~ 365 (684)
+++.|+||+|||++|+.+++.+ +...+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 6899999999999999999998 55556666443
No 341
>PRK02496 adk adenylate kinase; Provisional
Probab=96.17 E-value=0.0046 Score=60.91 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=25.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
.+++.||||+|||++|+.||+.++.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 58999999999999999999999876654
No 342
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.16 E-value=0.0053 Score=60.00 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=25.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
..+++.||||+|||++|+.+++.++.+.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 57889999999999999999999875543
No 343
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.13 E-value=0.026 Score=71.01 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
..+-++|++|+|||+||+++++.+...
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 678899999999999999998877443
No 344
>PLN02200 adenylate kinase family protein
Probab=96.05 E-value=0.0075 Score=62.51 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=29.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
+..+++.|+||+|||++|+.||+.++.+ .+++.++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 4678999999999999999999999754 46665554
No 345
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.05 E-value=0.0056 Score=61.85 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=25.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
++++||||+|||++|+.||+.++.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876654
No 346
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.05 E-value=0.018 Score=57.66 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~ 365 (684)
..++++||||+|||+++..++... +.+.+.++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 678899999999999999887654 45677777754
No 347
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.0057 Score=59.99 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=25.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
+-+.||||||||++|+.||+.++.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999874
No 348
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.03 E-value=0.025 Score=67.76 Aligned_cols=89 Identities=20% Similarity=0.320 Sum_probs=50.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC-----CCEEEEeccccc---ccccccchhHHHHHHHHhcccchH-----h-hhcC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN-----VPFVIADATTLT---QARYVGEDVESILYKLLTVSDYNV-----A-AAQQ 396 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~-----~pfv~i~~s~l~---~s~yvG~~~~~~l~~l~~~a~~~v-----~-~a~~ 396 (684)
..+++.|+||||||++++++.+.+. .+++.+-.+.-. -....|.. ...+..++....... . ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~-a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLT-ASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCc-cccHHHHhhccCCccchhhhhccccC
Confidence 5789999999999999999977762 233322222110 01112221 222333333221110 0 1245
Q ss_pred cEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
.+|++||+..+... ....|++.+.
T Consensus 418 ~llIvDEaSMvd~~--------------~~~~Ll~~~~ 441 (720)
T TIGR01448 418 DLLIVDESSMMDTW--------------LALSLLAALP 441 (720)
T ss_pred CEEEEeccccCCHH--------------HHHHHHHhCC
Confidence 79999999998765 6666777654
No 349
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.02 E-value=0.013 Score=64.56 Aligned_cols=26 Identities=35% Similarity=0.765 Sum_probs=23.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
.++.+.|+.|||||++.++|...+..
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 78999999999999999999888843
No 350
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.01 E-value=0.0064 Score=61.70 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=25.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
.|+++||||+|||++|+.||+.++.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999866654
No 351
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.96 E-value=0.081 Score=56.35 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=27.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh----C-CCEEEEeccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV----N-VPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l----~-~pfv~i~~s~ 365 (684)
+..++|+||+|+|||+++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4689999999999999999998766 2 4555555544
No 352
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.087 Score=58.87 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=27.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
+..++|+||+|+|||+++..||..+ +..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 4789999999999999999999877 3344445543
No 353
>PRK04040 adenylate kinase; Provisional
Probab=95.88 E-value=0.0084 Score=60.06 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=24.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--CCCE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV--NVPF 358 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l--~~pf 358 (684)
..++++|+||+|||++++.+++.+ +.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 578999999999999999999999 4444
No 354
>PF13245 AAA_19: Part of AAA domain
Probab=95.88 E-value=0.013 Score=50.28 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=18.6
Q ss_pred ceEEEEccCCCcHH-HHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKT-LLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT-~LAraLA~~l 354 (684)
..+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667999999999 6666666666
No 355
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.051 Score=55.83 Aligned_cols=105 Identities=21% Similarity=0.366 Sum_probs=58.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
.-|.+.|++|+|||++|+.|+..++.+.+.+=+.+ .|.-.. ..... .....+-.|..+.+.-+
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D----~YYk~~-~~~~~------------~~~~~~n~d~p~A~D~d 71 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLD----DYYKDQ-SHLPF------------EERNKINYDHPEAFDLD 71 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecc----ccccch-hhcCH------------hhcCCcCccChhhhcHH
Confidence 46778999999999999999999986632221111 111111 11000 01123333444443322
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCC-CeEEEeccceEEEe
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG-DNIQIDTKDILFIC 465 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g-~~i~id~~niIfI~ 465 (684)
-....|..+++|..+.+|.-......+- ..+.+...++++|-
T Consensus 72 -------------Ll~~~L~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvE 114 (218)
T COG0572 72 -------------LLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVE 114 (218)
T ss_pred -------------HHHHHHHHHHcCCcccccccchhcccccCCccccCCCcEEEEe
Confidence 2566677888899898885444333332 34455556666654
No 356
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.82 E-value=0.0083 Score=63.59 Aligned_cols=31 Identities=32% Similarity=0.314 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~~pfv~i 361 (684)
..++|.|+||+|||++|+.|++.+ +..++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 578899999999999999999998 5544443
No 357
>PRK08233 hypothetical protein; Provisional
Probab=95.80 E-value=0.012 Score=57.26 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=27.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC-CCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN-VPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~-~pfv~i~~s 364 (684)
..|.+.|+||+||||+|+.|+..++ .+.+..|..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 5678899999999999999999985 445545443
No 358
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.024 Score=56.43 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=45.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc--cccccchhHHHHHHHHhcccchHhhhcCcEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ--ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~--s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfID 402 (684)
..+.|+|.+|+|||++|.++.+.| |...+..|+..+.. ..-.|.+.+.....+.+-+.-.-..+..|+|+|=
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviv 100 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIV 100 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 688899999999999999999998 66777888775541 1223444444444433322111112345666653
No 359
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.78 E-value=0.015 Score=48.59 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l 354 (684)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999996
No 360
>PRK14527 adenylate kinase; Provisional
Probab=95.78 E-value=0.0077 Score=59.90 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=25.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
..++++||||+|||++|+.+|+.++.+.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 67999999999999999999999876543
No 361
>PRK04182 cytidylate kinase; Provisional
Probab=95.78 E-value=0.0098 Score=57.61 Aligned_cols=29 Identities=41% Similarity=0.582 Sum_probs=26.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
.|+|.|++|+|||++|+.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999988764
No 362
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.77 E-value=0.038 Score=58.57 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=46.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 408 (684)
.+|.||.|.+|+||+++++..|-..+..++.+..+. +|--.+....++.++..+.. +.++.+++|+|-+-..
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d~qi~~ 102 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK----GYSIKDFKEDLKKALQKAGI---KGKPTVFLLTDSQIVD 102 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST----TTHHHHHHHHHHHHHHHHHC---S-S-EEEEEECCCSSS
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC----CcCHHHHHHHHHHHHHHHhc---cCCCeEEEecCcccch
Confidence 389999999999999999988888888887776532 22222222334444444322 2456788888866543
No 363
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.76 E-value=0.02 Score=62.70 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+++.|.||||||.||-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 578999999999999999999988
No 364
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.76 E-value=0.023 Score=57.64 Aligned_cols=97 Identities=22% Similarity=0.294 Sum_probs=58.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
..++|.|+-|+|||+..+.|.... +.-+..... . ......+ ...-|+.|||++.+.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~-----~---kd~~~~l----------~~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD-----D---KDFLEQL----------QGKWIVELDELDGLSKK 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCccccCC-----C---cHHHHHH----------HHhHheeHHHHhhcchh
Confidence 578899999999999999996652 111111111 0 1112111 12359999999998754
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCc
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~ 469 (684)
-++.|..++......+ +.+.++...--.+..+||+|+|.
T Consensus 111 --------------~~~~lK~~iT~~~~~~------R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 111 --------------DVEALKSFITRRTDTY------RPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred --------------hHHHHHHHhcccceee------ecCCcCcceeeceeEEEEeccCC
Confidence 5677777775332221 22333333445667899999984
No 365
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.048 Score=60.44 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=22.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
...++|+||+|+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 366
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.72 E-value=0.025 Score=61.83 Aligned_cols=25 Identities=44% Similarity=0.761 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+++.||+|+|||++.+++.+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999988774
No 367
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.69 E-value=0.052 Score=61.57 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=28.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~ 365 (684)
..++|+|+||+|||+++..++... +.+.++++..+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 688999999999999999998765 45666776543
No 368
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.68 E-value=0.025 Score=57.97 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
..++++|+||+|||+++..++... +.+.+.++.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 788999999999999999986543 445555544
No 369
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.67 E-value=0.017 Score=62.73 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=30.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
..++|.|+||+|||+|++.+++.++.+++.--..++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 5789999999999999999999999888655444443
No 370
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.67 E-value=0.011 Score=60.61 Aligned_cols=37 Identities=38% Similarity=0.547 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
..++++||+|||||.+|-++|+..+.|++..|.-..-
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 3579999999999999999999999999999865443
No 371
>PRK06696 uridine kinase; Validated
Probab=95.64 E-value=0.014 Score=59.61 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=31.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~ 367 (684)
.-|.+.|++|+|||++|+.|++.+ +.+.+.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 688899999999999999999999 5677776666654
No 372
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.63 E-value=0.011 Score=56.74 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=26.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
.|.+.|++|+|||++|+.+|+.++.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 478999999999999999999998887543
No 373
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.60 E-value=0.024 Score=60.11 Aligned_cols=77 Identities=27% Similarity=0.313 Sum_probs=42.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc--ccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT--QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~--~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 406 (684)
=++|+|-||+|||++|+.|++.+ +...+.++-..+. ...|.-...++.++..+..+-... .....||++|....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCch
Confidence 47899999999999999999987 4556666644332 223433344666665554432221 23458999999888
Q ss_pred ccc
Q 005670 407 ITK 409 (684)
Q Consensus 407 l~~ 409 (684)
+-.
T Consensus 82 iKg 84 (270)
T PF08433_consen 82 IKG 84 (270)
T ss_dssp SHH
T ss_pred HHH
Confidence 744
No 374
>PRK01184 hypothetical protein; Provisional
Probab=95.58 E-value=0.012 Score=57.98 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=24.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
.++|+|+||+||||+++ +++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 68899999999999998 788888777544
No 375
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.57 E-value=0.052 Score=60.17 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=27.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
..+++.|+||+|||+++..+|..+ +.+.++++..
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 678999999999999999998765 2456666654
No 376
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.57 E-value=0.024 Score=55.98 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=28.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
.+|+.|+||+|||++|..++..++.+.+.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 589999999999999999999988776665543
No 377
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.57 E-value=0.026 Score=60.74 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
-.+++.|++|||||++|..||+.++.+.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 6899999999999999999999998773
No 378
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.55 E-value=0.0091 Score=56.96 Aligned_cols=31 Identities=39% Similarity=0.548 Sum_probs=25.3
Q ss_pred EEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 335 LMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 335 L~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
+.||||+|||++|+.||+.++. +.+++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999964 556665544
No 379
>PLN02199 shikimate kinase
Probab=95.55 E-value=0.014 Score=62.71 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=29.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.+|+|+|.+|+|||++++.+|+.++.+|+..|
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 68999999999999999999999999997655
No 380
>PLN02674 adenylate kinase
Probab=95.54 E-value=0.014 Score=61.16 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=28.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
..++|.||||+||+++|+.||+.++.+. +++.++.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 5799999999999999999999997554 4554443
No 381
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.52 E-value=0.038 Score=57.87 Aligned_cols=68 Identities=29% Similarity=0.394 Sum_probs=41.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEe-cccccccc-------c--ccchhHHHHHHHHhcccchHhhhcCc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIAD-ATTLTQAR-------Y--VGEDVESILYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~---pfv~i~-~s~l~~s~-------y--vG~~~~~~l~~l~~~a~~~v~~a~~g 397 (684)
.++++.||+|+|||++++++...+.. .++.+. ..++...+ . .+.+....+...++. .+-
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~--------~pD 199 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQ--------DPD 199 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS----------S
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcC--------CCC
Confidence 79999999999999999999998843 333333 22332100 0 122334455555443 457
Q ss_pred EEEEecccc
Q 005670 398 IVYIDEVDK 406 (684)
Q Consensus 398 ILfIDEIDk 406 (684)
+|+++||-.
T Consensus 200 ~iiigEiR~ 208 (270)
T PF00437_consen 200 VIIIGEIRD 208 (270)
T ss_dssp EEEESCE-S
T ss_pred cccccccCC
Confidence 999999986
No 382
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.52 E-value=0.036 Score=52.91 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=19.0
Q ss_pred ceEEEEccCCCcHHH-HHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTL-LAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~-LAraLA~~l 354 (684)
.++++.||+|+|||+ ++..+.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 478999999999999 555555554
No 383
>PTZ00301 uridine kinase; Provisional
Probab=95.52 E-value=0.047 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.-|.+.|+||+|||++|+.|++.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 467799999999999999998876
No 384
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.011 Score=58.63 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.++++|.||||||++++.|+ .++.+.+..+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8877765444
No 385
>PRK14526 adenylate kinase; Provisional
Probab=95.49 E-value=0.014 Score=59.64 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=26.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
.++|+||||+|||++++.||+.++.++ +++.++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChH
Confidence 478999999999999999999987655 444443
No 386
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.49 E-value=0.012 Score=58.30 Aligned_cols=29 Identities=38% Similarity=0.568 Sum_probs=25.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
..++|.||+|+|||++++.|+..++.+|+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 47899999999999999999998876554
No 387
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.46 E-value=0.044 Score=65.99 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=43.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc-----c-cccccchhHHHHHHHHhcccchHhhhcCcEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----Q-ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYI 401 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~-----~-s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfI 401 (684)
..++|.|+||||||++++++...+ +..++-+-.+... + .+....+..+.+... ..... ......+|+|
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~-~~~~~--~~~~~~llIv 445 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAW-ANGRD--LLSDKDVLVI 445 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhh-ccCcc--cCCCCcEEEE
Confidence 567899999999999999997766 3344433222111 1 111112222211111 11110 1135689999
Q ss_pred ecccccccc
Q 005670 402 DEVDKITKK 410 (684)
Q Consensus 402 DEIDkl~~~ 410 (684)
||+..+...
T Consensus 446 DEasMv~~~ 454 (744)
T TIGR02768 446 DEAGMVGSR 454 (744)
T ss_pred ECcccCCHH
Confidence 999998765
No 388
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.43 E-value=0.012 Score=56.79 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
|.|+|+||||||+|++.|++. +.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 66654
No 389
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.40 E-value=0.048 Score=55.65 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=19.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.+.||.|||||+||-+.|-.+
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 578899999999999999888655
No 390
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.39 E-value=0.045 Score=59.47 Aligned_cols=76 Identities=28% Similarity=0.274 Sum_probs=44.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---ccccch-----------hHHHHHHHHhcccchHhh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---RYVGED-----------VESILYKLLTVSDYNVAA 393 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s---~yvG~~-----------~~~~l~~l~~~a~~~v~~ 393 (684)
..++++||||+|||+||..++... +.+.+.+|+.....+ ...|.+ .+..+..+ ...+..
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~----~~li~~ 131 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIA----ETLVRS 131 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHH----HHHhhc
Confidence 578899999999999988765544 556667765432110 001111 01111111 111223
Q ss_pred hcCcEEEEecccccccc
Q 005670 394 AQQGIVYIDEVDKITKK 410 (684)
Q Consensus 394 a~~gILfIDEIDkl~~~ 410 (684)
....+|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPK 148 (321)
T ss_pred cCCcEEEEcchhhhccc
Confidence 35689999999998764
No 391
>PLN02165 adenylate isopentenyltransferase
Probab=95.38 E-value=0.014 Score=63.48 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=28.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
..++|+||+|+|||+||..||+.++..++..|.
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 578999999999999999999999887765543
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.37 E-value=0.05 Score=57.78 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.++++.||+|+|||++.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999999984
No 393
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.37 E-value=0.05 Score=54.54 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=29.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l 366 (684)
..+.|+|++|+|||++|+.|++.+ +...+.++...+
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 788999999999999999999987 344566665443
No 394
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.35 E-value=0.013 Score=58.39 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l 354 (684)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999997666655554
No 395
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.34 E-value=0.068 Score=57.49 Aligned_cols=24 Identities=54% Similarity=0.736 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.++|+.|++|+|||++++++.+.+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999887
No 396
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.33 E-value=0.037 Score=56.28 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
..++++||||+|||++|..+|... +.+.+.+++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 678999999999999999998655 5667777765
No 397
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.33 E-value=0.033 Score=61.61 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=45.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-----CEEE--Eecc-----cccc--ccccc-----chhHH---HHHHHHhccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV-----PFVI--ADAT-----TLTQ--ARYVG-----EDVES---ILYKLLTVSD 388 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-----pfv~--i~~s-----~l~~--s~yvG-----~~~~~---~l~~l~~~a~ 388 (684)
...+++||||||||+|++.+++.+.. .++. ++-. ++.. .+-++ ..... ....+...+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 46799999999999999999998732 1222 2111 1110 00011 01111 1123333444
Q ss_pred chHhhhcCcEEEEeccccccc
Q 005670 389 YNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 389 ~~v~~a~~gILfIDEIDkl~~ 409 (684)
+..+....-+|++||+.++..
T Consensus 214 ~f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHcCCCEEEEEeCcHHHHH
Confidence 445556788999999998865
No 398
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.017 Score=56.34 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=30.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
+..+++.|++|+|||++++++++.++.+|+ ++.++.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~--dgDd~H 47 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFI--DGDDLH 47 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCccc--ccccCC
Confidence 468999999999999999999999999995 444554
No 399
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.29 E-value=0.046 Score=57.70 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=42.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEe-ccccccc--------ccccchhHHHHHHHHhcccchHhhhcCcE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIAD-ATTLTQA--------RYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~---pfv~i~-~s~l~~s--------~yvG~~~~~~l~~l~~~a~~~v~~a~~gI 398 (684)
..+++.||+|+|||++++++...+.. .++.+. ..++.-. ...|.+....++..++. .+-+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~--------~PD~ 152 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQ--------DPDI 152 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhcc--------CCCE
Confidence 57999999999999999999777742 244442 2222211 11122334444444433 5679
Q ss_pred EEEecccc
Q 005670 399 VYIDEVDK 406 (684)
Q Consensus 399 LfIDEIDk 406 (684)
|+++|+..
T Consensus 153 i~vgEiR~ 160 (264)
T cd01129 153 IMVGEIRD 160 (264)
T ss_pred EEeccCCC
Confidence 99999976
No 400
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.29 E-value=0.022 Score=57.58 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l 354 (684)
+++.|+||+|||++.+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999998884
No 401
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.29 E-value=0.018 Score=62.27 Aligned_cols=34 Identities=44% Similarity=0.606 Sum_probs=30.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
..++++||+|+|||++|..||+.++.+++..|.-
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 5789999999999999999999999888777654
No 402
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.25 E-value=0.062 Score=53.10 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=25.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
+|++|++|+|||++|..++...+.+.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 5899999999999999999886666666643
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=95.24 E-value=1.1 Score=50.83 Aligned_cols=38 Identities=29% Similarity=0.500 Sum_probs=28.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEeccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~s~l~ 367 (684)
|..++++|++|+|||+++..+|..+ +.....+++..+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 5789999999999999888887765 4456666665443
No 404
>PF13479 AAA_24: AAA domain
Probab=95.23 E-value=0.02 Score=58.19 Aligned_cols=20 Identities=60% Similarity=0.919 Sum_probs=18.6
Q ss_pred ceEEEEccCCCcHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraL 350 (684)
..++|+|+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 68999999999999999887
No 405
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.18 E-value=0.2 Score=54.90 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.6
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
++.++.|||+-|+|||.|.-..-..+.
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCC
Confidence 468999999999999999988877773
No 406
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.18 E-value=0.05 Score=67.04 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=48.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---cccccchhHHHHHHHHhc-ccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---ARYVGEDVESILYKLLTV-SDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~---s~yvG~~~~~~l~~l~~~-a~~~v~~a~~gILfIDE 403 (684)
..+++.|++|||||++.+++.+.+ +..++-+-.+.... ..-.|.. ...+..++.. ..+........||+|||
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~-a~TI~sll~~~~~~~~~l~~~~vlIVDE 441 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIA-SRTIASLEHGWGQGRDLLTSRDVLVIDE 441 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcc-hhhHHHHHhhhcccccccccCcEEEEEC
Confidence 357899999999999998877665 43443332221110 0111221 2223332211 00100122457999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+..+... ....|++..+
T Consensus 442 ASMv~~~--------------~m~~LL~~a~ 458 (988)
T PRK13889 442 AGMVGTR--------------QLERVLSHAA 458 (988)
T ss_pred cccCCHH--------------HHHHHHHhhh
Confidence 9998765 5566776554
No 407
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.18 E-value=0.027 Score=55.00 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~ 365 (684)
..+.|.|+||+|||++|+.++..+ +..+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 688999999999999999999988 33455565543
No 408
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.15 E-value=0.018 Score=56.21 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=23.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
+..++|.|+||+|||++|+.+++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999985
No 409
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.15 E-value=0.074 Score=52.82 Aligned_cols=25 Identities=48% Similarity=0.724 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+++.||+|+|||++++++...+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 6899999999999999999998874
No 410
>PRK14529 adenylate kinase; Provisional
Probab=95.10 E-value=0.018 Score=59.41 Aligned_cols=28 Identities=32% Similarity=0.625 Sum_probs=25.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
.++|.||||+|||++++.||+.++.+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4889999999999999999999987654
No 411
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.07 E-value=0.092 Score=57.36 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=23.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.++|+.|++|+|||++++++...+.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 7999999999999999999999884
No 412
>PLN02796 D-glycerate 3-kinase
Probab=95.07 E-value=0.61 Score=51.30 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
--+-+.|++|+|||++++.|...+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5678999999999999999999984
No 413
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.06 E-value=0.026 Score=57.10 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
..+++.|.||+|||++|+.+|+.++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 6889999999999999999999987654
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.05 E-value=0.078 Score=52.64 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=18.4
Q ss_pred EEEEccCCCcHHHHHHHHHH
Q 005670 333 ILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~ 352 (684)
++|+||.|.|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 415
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.01 E-value=0.16 Score=54.23 Aligned_cols=105 Identities=21% Similarity=0.176 Sum_probs=68.9
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005670 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (684)
.-+..+..+.+.+.+.|.....-.+..++..+..++. ..+...+-|+|.+++|||
T Consensus 153 ~Gtle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l-------------------------~~~~~~~hl~G~Ss~GKT 207 (286)
T PF06048_consen 153 KGTLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLL-------------------------GVEGFGFHLYGQSSSGKT 207 (286)
T ss_pred CcCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh-------------------------CCCceEEEEEeCCCCCHH
Confidence 4466777777778888888877777666655544321 122367889999999999
Q ss_pred HHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 345 LLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 345 ~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
+++++.+...|.|- .+. ..|.+.. -.+-..+ .......|+|||+....+.
T Consensus 208 t~~~~a~Sv~G~p~------~l~-~sw~~T~-n~le~~a--------~~~nd~~l~lDE~~~~~~~ 257 (286)
T PF06048_consen 208 TALQLAASVWGNPD------GLI-RSWNSTD-NGLERTA--------AAHNDLPLVLDELSQADPK 257 (286)
T ss_pred HHHHHhhhhCcCch------hhh-hcchhhH-HHHHHHH--------HHcCCcceEehhccccchh
Confidence 99999999988776 222 2333322 1111111 2235689999999886554
No 416
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.99 E-value=0.02 Score=56.00 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
..+++.||||+|||+++++|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 35789999999999999999998753
No 417
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.98 E-value=0.068 Score=52.67 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=28.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l 366 (684)
..++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 688999999999999999999987 334566665544
No 418
>PLN02459 probable adenylate kinase
Probab=94.96 E-value=0.031 Score=58.98 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
.+++|.||||+||+++|+.+|+.++.+. +++.++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdl 63 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDL 63 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHH
Confidence 4688999999999999999999997655 444443
No 419
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.96 E-value=0.027 Score=53.64 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
..++|.|+.|+|||++++.+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 578999999999999999999999753
No 420
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.95 E-value=0.13 Score=60.67 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.-.++.|+||||||++++.+...+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999988776554
No 421
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.93 E-value=0.037 Score=55.70 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-CEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-pfv~i~~s~ 365 (684)
..|.|.|++|+|||+|++.|++.++. .+..++...
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 68899999999999999999999842 344444433
No 422
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.92 E-value=0.27 Score=59.86 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=24.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.-+++.||+|.|||+++..+++..+ ++.-++
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~ 63 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYS 63 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEe
Confidence 5789999999999999999887665 544443
No 423
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=94.90 E-value=0.14 Score=59.76 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=13.8
Q ss_pred ceEEEEccCCCcHHH
Q 005670 331 SNILLMGPTGSGKTL 345 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~ 345 (684)
..+++.|++|+|||+
T Consensus 67 qvlIviGeTGsGKST 81 (674)
T KOG0922|consen 67 QVLIVIGETGSGKST 81 (674)
T ss_pred CEEEEEcCCCCCccc
Confidence 688999999999997
No 424
>PRK13764 ATPase; Provisional
Probab=94.90 E-value=0.047 Score=63.90 Aligned_cols=25 Identities=36% Similarity=0.699 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.++|++||||+|||++++++++.+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999999884
No 425
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=94.89 E-value=0.12 Score=60.23 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+|+.||+|||||+|.|+||..-
T Consensus 420 ~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 420 ERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 688999999999999999999886
No 426
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.89 E-value=0.1 Score=59.49 Aligned_cols=86 Identities=24% Similarity=0.335 Sum_probs=56.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE---EE-ecccccc--------cccccchhHHHHHHHHhcccchHhhhcCcE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV---IA-DATTLTQ--------ARYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv---~i-~~s~l~~--------s~yvG~~~~~~l~~l~~~a~~~v~~a~~gI 398 (684)
+-+|++||+|+|||+...++.+.++.+.. .+ |.-++.- -.-.|-+....++.+++. .|-|
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRq--------DPDv 330 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQ--------DPDV 330 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhcc--------CCCe
Confidence 57889999999999999999999865433 22 1222221 123455666777777765 4579
Q ss_pred EEEecccccccccccccCCCCCcchHHHHHHHHHHcCceee
Q 005670 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVN 439 (684)
Q Consensus 399 LfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~ 439 (684)
|.+.||-..-. ++-++-..+.|+.|.
T Consensus 331 ImVGEIRD~ET---------------AeiavqAalTGHLVl 356 (500)
T COG2804 331 IMVGEIRDLET---------------AEIAVQAALTGHLVL 356 (500)
T ss_pred EEEeccCCHHH---------------HHHHHHHHhcCCeEe
Confidence 99999977421 444455555676653
No 427
>PRK13975 thymidylate kinase; Provisional
Probab=94.87 E-value=0.041 Score=54.44 Aligned_cols=27 Identities=44% Similarity=0.444 Sum_probs=24.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.-+.|.|++|+|||++++.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999999754
No 428
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.39 Score=55.55 Aligned_cols=25 Identities=44% Similarity=0.597 Sum_probs=21.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
...+.|+||+|+|||+++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999988754
No 429
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.73 E-value=0.057 Score=51.75 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=24.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.++||.+|+|+|||.++-.++..+..+++.+-
T Consensus 26 ~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~ 57 (184)
T PF04851_consen 26 RRVLLNAPTGSGKTIIALALILELARKVLIVA 57 (184)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCEEEEECCCCCcChhhhhhhhccccceeEec
Confidence 68999999999999999876555544555443
No 430
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.65 E-value=0.031 Score=55.31 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=24.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
..+.++|++|+|||++++.++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 578999999999999999999998764
No 431
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.65 E-value=0.031 Score=53.00 Aligned_cols=26 Identities=42% Similarity=0.675 Sum_probs=22.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
++|+||+|+|||++++.+++.+...|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 67899999999999999999875543
No 432
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.57 E-value=0.077 Score=57.16 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.++++.||+|+|||++++++...+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC
Confidence 7999999999999999999998873
No 433
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.57 E-value=0.037 Score=55.53 Aligned_cols=38 Identities=32% Similarity=0.464 Sum_probs=30.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEeccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV-NVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l-~~pfv~i~~s~l~ 367 (684)
|.-+++.|+||+|||+++..+...+ ...++.+|..++.
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 4788999999999999999999988 6778889988776
No 434
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.57 E-value=0.4 Score=54.12 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~i~~s~ 365 (684)
..++|+||+|+|||+++..||..+ +.....+++..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 688999999999999988887654 23455555544
No 435
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.55 E-value=0.037 Score=59.22 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=29.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~ 365 (684)
++++||+|+|||++|..+|+.++..++.+|.-.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~q 34 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ 34 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhh
Confidence 689999999999999999999998887777543
No 436
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.55 E-value=0.037 Score=54.60 Aligned_cols=32 Identities=41% Similarity=0.657 Sum_probs=25.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
+.++|++|+|||++++.+++ ++.+++ ++.++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHH
Confidence 68999999999999999999 777664 444443
No 437
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.55 E-value=0.22 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 438
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.53 E-value=0.1 Score=59.18 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=28.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCC-EEEEec
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVP-FVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~p-fv~i~~ 363 (684)
|..+++.|+||+|||++|..+|..++.. ++..|.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 4789999999999999999999999875 444443
No 439
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.53 E-value=0.12 Score=54.98 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=28.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~ 365 (684)
+..++|+||+|+|||+++..+|..+ +.....+++..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4788899999999999999998877 44455555543
No 440
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.50 E-value=0.089 Score=61.49 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=29.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC----CEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~----pfv~i~~s~l 366 (684)
..++|+|.||+|||++|++||+.++. ++..+|...+
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 68999999999999999999999964 3455665443
No 441
>PRK12338 hypothetical protein; Provisional
Probab=94.50 E-value=0.038 Score=59.94 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=26.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
|..+++.|+||+|||++|+++|+.++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 36889999999999999999999998654
No 442
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.49 E-value=0.038 Score=64.17 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=30.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
..++|.|.+|+|||++++.+|+.++.+|+..|.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 689999999999999999999999999987774
No 443
>PLN02840 tRNA dimethylallyltransferase
Probab=94.47 E-value=0.041 Score=61.76 Aligned_cols=34 Identities=41% Similarity=0.612 Sum_probs=30.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
..+++.||+|+|||++|..||+.++.+++.+|.-
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 5689999999999999999999999888777754
No 444
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=94.46 E-value=0.19 Score=52.28 Aligned_cols=108 Identities=21% Similarity=0.326 Sum_probs=59.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CC--C------------EEEEeccc-cc-ccccccchhHHHHHHHHhcccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-----NV--P------------FVIADATT-LT-QARYVGEDVESILYKLLTVSDY 389 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~--p------------fv~i~~s~-l~-~s~yvG~~~~~~l~~l~~~a~~ 389 (684)
+.++++||...|||++.|.++-.. |. | |..+...+ +. ....+..+ -..+..+++.+.
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E-~~~~~~il~~~~- 121 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAE-MKRLSSILRNAT- 121 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHH-HHHHHHHHHH---
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHh-HHHHHhhhhhcc-
Confidence 568999999999999999997765 32 2 22222211 11 11222222 344555554432
Q ss_pred hHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCc
Q 005670 390 NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (684)
Q Consensus 390 ~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~ 469 (684)
+.++|+|||+.+-... ..+..+..++++.|.. ..++.+|+++.+
T Consensus 122 -----~~sLvliDE~g~gT~~---------~eg~ai~~aile~l~~----------------------~~~~~~i~~TH~ 165 (235)
T PF00488_consen 122 -----EKSLVLIDELGRGTNP---------EEGIAIAIAILEYLLE----------------------KSGCFVIIATHF 165 (235)
T ss_dssp -----TTEEEEEESTTTTSSH---------HHHHHHHHHHHHHHHH----------------------TTT-EEEEEES-
T ss_pred -----cceeeecccccCCCCh---------hHHHHHHHHHHHHHHH----------------------hccccEEEEecc
Confidence 5689999999885433 2233345555555541 113566778887
Q ss_pred ccHHHHH
Q 005670 470 VDIEKTI 476 (684)
Q Consensus 470 ~dLe~~i 476 (684)
.+|.+..
T Consensus 166 ~~l~~~~ 172 (235)
T PF00488_consen 166 HELAELL 172 (235)
T ss_dssp GGGGGHH
T ss_pred chhHHHh
Confidence 7765544
No 445
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.46 E-value=0.042 Score=59.24 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=32.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
.-++++||++||||-+|-.||+.++.+++.+|.-.+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 678999999999999999999999999998886543
No 446
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.46 E-value=0.032 Score=55.68 Aligned_cols=23 Identities=61% Similarity=0.860 Sum_probs=21.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
|-+.||+|+|||++|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999996
No 447
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.45 E-value=0.16 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|+||.|+|||++.+.++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999987443
No 448
>PLN02348 phosphoribulokinase
Probab=94.45 E-value=0.14 Score=57.12 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
.-|-+.|++|+|||++|+.|++.++.
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 56779999999999999999999964
No 449
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.42 E-value=0.028 Score=57.31 Aligned_cols=24 Identities=50% Similarity=0.647 Sum_probs=22.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
-++|+|+||+|||++|+-+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999999993
No 450
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.41 E-value=0.035 Score=55.53 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=26.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~ 365 (684)
+.-++|.||+|+|||+|++.+.+....-+..+.+++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TT 39 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTT 39 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccC
Confidence 367999999999999999999887632233344443
No 451
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.40 E-value=0.31 Score=51.40 Aligned_cols=24 Identities=42% Similarity=0.751 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.-++|.||+|||||++.+.|-+.+
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 456789999999999999998887
No 452
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.39 E-value=0.049 Score=54.00 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=27.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLT 367 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l~ 367 (684)
+.+.|+||+|||++|+.|++.+. .+...++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 67899999999999999999984 445555554443
No 453
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.38 E-value=0.11 Score=54.57 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=24.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~ 362 (684)
..++++||||||||++|..++... +.+.+.++
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 688899999999999998876543 34544444
No 454
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.37 E-value=0.14 Score=54.14 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+-|+|++||||||++|.+.+...
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcC
Confidence 4667999999999999999999885
No 455
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.37 E-value=0.038 Score=55.55 Aligned_cols=30 Identities=43% Similarity=0.502 Sum_probs=23.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHh-CCCEEEEe
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV-NVPFVIAD 362 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l-~~pfv~i~ 362 (684)
|.+.|+||+|||++|+.|++.+ +..++..|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 5788999999999999999998 34444333
No 456
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.37 E-value=0.081 Score=58.08 Aligned_cols=25 Identities=52% Similarity=0.761 Sum_probs=23.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.++|+.||+|+|||++++++...+.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccC
Confidence 7999999999999999999999874
No 457
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.37 E-value=0.029 Score=54.68 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
.-++|+||+|+|||++++.|++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46899999999999999999997644
No 458
>PRK13808 adenylate kinase; Provisional
Probab=94.36 E-value=0.039 Score=60.18 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
.|+|+||||+|||++++.|++.++.+.+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is 30 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 48999999999999999999999765543
No 459
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.35 E-value=0.055 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
+.|.||+|+|||+++++|++.++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999883
No 460
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.33 E-value=0.03 Score=54.66 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=22.3
Q ss_pred EccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 336 MGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 336 ~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
+|+||+|||+++++++..++..++.-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998765543
No 461
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.31 E-value=0.14 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4789999999999999999984
No 462
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.29 E-value=0.079 Score=65.86 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=50.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc-----cc-ccccccchhHHHHHHHHhcccchHhhhcCcEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT-----LT-QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYI 401 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~-----l~-~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfI 401 (684)
...++.|++|||||++.+++.+.+ +..++-+-.+. |. ..+..+.+..+.+ +....+......+.||+|
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~l---l~~~~~~~~l~~~~vlVI 474 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWE---LRWNQGRDQLDNKTVFVL 474 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHH---hhhccCccCCCCCcEEEE
Confidence 578999999999999999998766 44444332211 11 1122222222211 111111111124579999
Q ss_pred ecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 402 DEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
||+..+... ....|++..+
T Consensus 475 DEAsMv~~~--------------~m~~Ll~~~~ 493 (1102)
T PRK13826 475 DEAGMVASR--------------QMALFVEAVT 493 (1102)
T ss_pred ECcccCCHH--------------HHHHHHHHHH
Confidence 999998765 6666777765
No 463
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.29 E-value=0.04 Score=63.15 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=29.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
+++|+|+||+|||++++.+|+.++.+|+..|.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 58999999999999999999999999986663
No 464
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.24 E-value=0.097 Score=53.42 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999984
No 465
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.23 E-value=0.17 Score=51.13 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
..++++|+||+|||++|..+|..+ +.+.+.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 578899999999999999998776 4566666653
No 466
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.19 E-value=0.067 Score=52.04 Aligned_cols=35 Identities=40% Similarity=0.519 Sum_probs=27.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l 366 (684)
.+++.|+||+|||+++..+|..+ +.....+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 46899999999999999998876 455666776543
No 467
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.16 E-value=0.097 Score=53.73 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.-+.|.||+|+|||++++.|++.+.
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6788999999999999999999984
No 468
>PRK08356 hypothetical protein; Provisional
Probab=94.14 E-value=0.06 Score=53.82 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~ 365 (684)
..++|+||||+|||++|+.|++ .+.+ .+++++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCc--EEeCCC
Confidence 4688999999999999999964 5554 455554
No 469
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.13 E-value=0.043 Score=54.77 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..++|+||+|+|||+|++.+++.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6889999999999999999999875
No 470
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.09 E-value=0.24 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
...+++++++|.|||++|-.+|-..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHH
Confidence 3799999999999999998886554
No 471
>PRK09354 recA recombinase A; Provisional
Probab=94.08 E-value=0.22 Score=54.84 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~ 365 (684)
..++++||||||||+||-.++... +...+.+|...
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 577899999999999998765443 55666776553
No 472
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.07 E-value=0.051 Score=54.71 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=26.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.+.++|++|+|||++++.+++.+|.+++..|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 5889999999999999999998888776433
No 473
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.03 E-value=0.2 Score=54.54 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=44.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccc---cccchhHHH-------HHHHHhcccchHhhhcCc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAR---YVGEDVESI-------LYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~---yvG~~~~~~-------l~~l~~~a~~~v~~a~~g 397 (684)
..+.++||||+|||+||-.++... +...+.+|...-..+. ..|.+.... ..+++......+......
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 577899999999999998876544 5667777764311000 011110000 000111111112234568
Q ss_pred EEEEecccccccc
Q 005670 398 IVYIDEVDKITKK 410 (684)
Q Consensus 398 ILfIDEIDkl~~~ 410 (684)
+|+||=+..+.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998764
No 474
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.02 E-value=0.43 Score=54.00 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=29.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~s~l 366 (684)
|..+++.|++|+|||++|..+|..+ +.....++|..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 5789999999999999988888774 345666666544
No 475
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.31 Score=57.73 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=42.8
Q ss_pred ccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEE--eccceEEE
Q 005670 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQI--DTKDILFI 464 (684)
Q Consensus 387 a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~i--d~~niIfI 464 (684)
.++.+.+|++|||||||+..|... .|+.+|+.|..+...+.... ....+..+.. -..+..+|
T Consensus 217 ~pGaVHkAngGVLiIdei~lL~~~--------------~~w~~LKa~~~k~~~~~~~~--~~s~~~~v~~e~vP~d~klI 280 (647)
T COG1067 217 KPGAVHKANGGVLIIDEIGLLAQP--------------LQWKLLKALLDKEQPIWGSS--EPSSGAPVRPESVPLDLKLI 280 (647)
T ss_pred cCcccccccCcEEEEEhhhhhCcH--------------HHHHHHHHHHhccccccCcC--ccccCcccCCCCcccceEEE
Confidence 457788999999999999999876 78888888864433222111 1111211111 11246777
Q ss_pred eccCcccH
Q 005670 465 CGGAFVDI 472 (684)
Q Consensus 465 ~tgn~~dL 472 (684)
+.||..++
T Consensus 281 ~~Gn~~~l 288 (647)
T COG1067 281 LAGNREDL 288 (647)
T ss_pred eeCCHHHH
Confidence 88885443
No 476
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.00 E-value=0.093 Score=52.51 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=31.7
Q ss_pred EEEEccCCCcHHHHHHHH-HH-Hh--CCCEEEEecccccc---cccccchhH---------------HHHHHHHhcccch
Q 005670 333 ILLMGPTGSGKTLLAKTL-AR-YV--NVPFVIADATTLTQ---ARYVGEDVE---------------SILYKLLTVSDYN 390 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraL-A~-~l--~~pfv~i~~s~l~~---s~yvG~~~~---------------~~l~~l~~~a~~~ 390 (684)
.+++|.||+|||+.|-.. .. .+ +++++. |...|.. ..+.+.... ........
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRK----- 76 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTT-----
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcc-----
Confidence 589999999999987444 32 23 555444 5443321 111111111 01111100
Q ss_pred HhhhcCcEEEEecccccccccc
Q 005670 391 VAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 391 v~~a~~gILfIDEIDkl~~~r~ 412 (684)
...+++|+|||++.+.+.+.
T Consensus 77 --~~~~~liviDEa~~~~~~r~ 96 (193)
T PF05707_consen 77 --LPKGSLIVIDEAQNFFPSRS 96 (193)
T ss_dssp --SGTT-EEEETTGGGTSB---
T ss_pred --cCCCcEEEEECChhhcCCCc
Confidence 11578999999999988743
No 477
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=0.23 Score=58.61 Aligned_cols=34 Identities=29% Similarity=0.594 Sum_probs=26.3
Q ss_pred CCccccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 322 DDDTVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 322 ~~~~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
++-...++| ..+-|+||+|.|||++|..+-+.+.
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344444444 4778999999999999999988873
No 478
>PRK06761 hypothetical protein; Provisional
Probab=93.91 E-value=0.059 Score=57.57 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.-+++.|+||+|||++++.+++.+....+.++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 46899999999999999999999975544443
No 479
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.83 E-value=0.13 Score=48.94 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.+.||+|+|||+++++++..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 577899999999999999999887
No 480
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.83 E-value=0.071 Score=59.77 Aligned_cols=25 Identities=36% Similarity=0.699 Sum_probs=23.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.++|+.||||.|||++|+++|+.+.
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHH
Confidence 6899999999999999999999984
No 481
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.78 E-value=0.17 Score=56.18 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+|++||+|+|||++++++.+.+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998887
No 482
>PRK07667 uridine kinase; Provisional
Probab=93.78 E-value=0.086 Score=52.77 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l 366 (684)
.-|.+.|+||+|||++|+.|++.++ .+...++..++
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 5778999999999999999999884 45555555443
No 483
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.77 E-value=0.14 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|+||.|+|||++.+.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 478899999999999999998543
No 484
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.76 E-value=0.2 Score=50.88 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=24.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~s 364 (684)
..+|+.||||||||+++..++... +.+.+.+...
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 789999999999999998765332 5666666654
No 485
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.74 E-value=0.23 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.243 Sum_probs=19.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.-+.+++++|+|||++|-.+|-..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 457788888999999998886554
No 486
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.74 E-value=0.1 Score=52.38 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=19.1
Q ss_pred eEEEEccCCCcHHHHHHHHH
Q 005670 332 NILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA 351 (684)
.++|+||.|+|||++.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 69999999999999999998
No 487
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.74 E-value=0.06 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.+.||+|+|||+++++|+..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5677999999999999999999885
No 488
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.71 E-value=0.11 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..++|+||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5789999999999999999974
No 489
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.70 E-value=0.071 Score=54.71 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
..+.+.||+|+|||++|+.||+.++.+++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999999987765
No 490
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.69 E-value=0.42 Score=53.33 Aligned_cols=25 Identities=64% Similarity=0.834 Sum_probs=19.4
Q ss_pred cceEEEEccCCCcHHHH-HHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLL-AKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~L-AraLA~~l 354 (684)
.+.+.|+||+|+|||+. |+.-|+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 58899999999999984 55545554
No 491
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.69 E-value=0.044 Score=60.19 Aligned_cols=33 Identities=36% Similarity=0.752 Sum_probs=25.4
Q ss_pred CCcccccccce-EEEEccCCCcHHHHHHHHHHHh
Q 005670 322 DDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 322 ~~~~v~~~~~~-vLL~GPPGTGKT~LAraLA~~l 354 (684)
++-.+.+.+.- +-|.||+||||||+.|.||..-
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444555554 4599999999999999999876
No 492
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.68 E-value=0.15 Score=59.90 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
...++.|+||||||+++..+...+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 678999999999999888776554
No 493
>PLN02748 tRNA dimethylallyltransferase
Probab=93.66 E-value=0.086 Score=60.08 Aligned_cols=34 Identities=44% Similarity=0.623 Sum_probs=29.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
+..+++.||+|+|||+||..||+.++.+++..|.
T Consensus 22 ~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 22 AKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 3578999999999999999999999887766554
No 494
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.65 E-value=0.15 Score=51.89 Aligned_cols=35 Identities=37% Similarity=0.339 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---------~~pfv~i~~s~ 365 (684)
..+.|+||||+|||+++..++... +...+.++...
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 677899999999999999997543 14566666543
No 495
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=93.62 E-value=0.087 Score=58.35 Aligned_cols=77 Identities=17% Similarity=0.318 Sum_probs=49.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
..++|+|||.||||+++-.|-+.++..+++.--+. ...+-+-+ +...|-+||++-.-.=.
T Consensus 263 nClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~-----------ShFWLqPL---------~d~Ki~llDDAT~~cW~ 322 (432)
T PF00519_consen 263 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK-----------SHFWLQPL---------ADAKIALLDDATYPCWD 322 (432)
T ss_dssp SEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTT-----------SCGGGGGG---------CT-SSEEEEEE-HHHHH
T ss_pred cEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCC-----------Ccccccch---------hcCcEEEEcCCcccHHH
Confidence 78999999999999999999999988776532111 01111111 23358899998765432
Q ss_pred cccccCCCCCcchHHH-HHHHHHHcCceeecc
Q 005670 411 AESLNISRDVSGEGVQ-QALLKMLEGTVVNVP 441 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq-~~LL~~LEg~~v~Ip 441 (684)
-. ..|..+|||..+.|.
T Consensus 323 --------------Y~D~ylRNaLDGN~vsiD 340 (432)
T PF00519_consen 323 --------------YIDTYLRNALDGNPVSID 340 (432)
T ss_dssp --------------HHHHHTHHHHCTSEEEEE
T ss_pred --------------HHHHHHHhccCCCeeeee
Confidence 22 335678899888774
No 496
>PRK10436 hypothetical protein; Provisional
Probab=93.61 E-value=0.26 Score=56.24 Aligned_cols=68 Identities=26% Similarity=0.416 Sum_probs=43.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC---EEEE-ecccccccc--------cccchhHHHHHHHHhcccchHhhhcCcE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIA-DATTLTQAR--------YVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p---fv~i-~~s~l~~s~--------yvG~~~~~~l~~l~~~a~~~v~~a~~gI 398 (684)
.-+|++||+|+|||++..++-+.++.+ ++.+ |..++.-++ -.|.+....++..++. .|-|
T Consensus 219 GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~--------dPDv 290 (462)
T PRK10436 219 GLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQ--------DPDV 290 (462)
T ss_pred CeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcC--------CCCE
Confidence 689999999999999988877777432 3333 222322111 1233445555555554 5579
Q ss_pred EEEecccc
Q 005670 399 VYIDEVDK 406 (684)
Q Consensus 399 LfIDEIDk 406 (684)
|++.||-.
T Consensus 291 I~vGEIRD 298 (462)
T PRK10436 291 IMVGEIRD 298 (462)
T ss_pred EEECCCCC
Confidence 99999876
No 497
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.61 E-value=0.26 Score=59.88 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=15.0
Q ss_pred ceEEEEccCCCcHHHHH
Q 005670 331 SNILLMGPTGSGKTLLA 347 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LA 347 (684)
..++|.||||+||||-.
T Consensus 66 ~vvii~getGsGKTTql 82 (845)
T COG1643 66 QVVIIVGETGSGKTTQL 82 (845)
T ss_pred CEEEEeCCCCCChHHHH
Confidence 67899999999999954
No 498
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.57 E-value=0.075 Score=59.46 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=26.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
..|+|+|++|||||+|+++||+.++.+.+
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 68999999999999999999999987754
No 499
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.57 E-value=0.21 Score=57.37 Aligned_cols=69 Identities=23% Similarity=0.344 Sum_probs=43.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC---CEEEEe-ccccccc--------ccccchhHHHHHHHHhcccchHhhhcCcE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIAD-ATTLTQA--------RYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~---pfv~i~-~s~l~~s--------~yvG~~~~~~l~~l~~~a~~~v~~a~~gI 398 (684)
.-+|++||+|+|||++..++-+.++. .++.+. ..++.-+ .-.|.+....++.+++. .|-|
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~--------dPDv 314 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQ--------DPDI 314 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhc--------CCCE
Confidence 46899999999999999987777642 344332 2222210 11233444555555544 5679
Q ss_pred EEEeccccc
Q 005670 399 VYIDEVDKI 407 (684)
Q Consensus 399 LfIDEIDkl 407 (684)
|++.||-.-
T Consensus 315 I~vGEiRd~ 323 (486)
T TIGR02533 315 IMVGEIRDL 323 (486)
T ss_pred EEEeCCCCH
Confidence 999998763
No 500
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=93.54 E-value=0.28 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.3
Q ss_pred cEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
+.++||++|++... .+|+||+.||+
T Consensus 56 ~k~iI~~a~~l~~~--------------A~NaLLK~LEE 80 (206)
T PRK08485 56 EKIIVIAAPSYGIE--------------AQNALLKILEE 80 (206)
T ss_pred cEEEEEchHhhCHH--------------HHHHHHHHhcC
Confidence 45678999999887 99999999994
Done!