Query 005670
Match_columns 684
No_of_seqs 432 out of 3607
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 6.1E-42 2.1E-46 367.9 21.7 344 264-634 2-346 (363)
2 1um8_A ATP-dependent CLP prote 100.0 7.2E-37 2.4E-41 329.7 26.9 356 263-634 7-362 (376)
3 1g41_A Heat shock protein HSLU 100.0 9.5E-35 3.2E-39 321.0 23.3 286 265-632 3-428 (444)
4 1ofh_A ATP-dependent HSL prote 100.0 4.1E-27 1.4E-31 243.7 22.1 286 265-632 3-294 (310)
5 1r6b_X CLPA protein; AAA+, N-t 99.9 3E-27 1E-31 276.8 22.3 273 255-610 432-719 (758)
6 4fcw_A Chaperone protein CLPB; 99.9 6.6E-26 2.3E-30 235.8 22.2 261 269-611 9-283 (311)
7 3pxi_A Negative regulator of g 99.9 2.4E-26 8.2E-31 269.5 20.8 258 255-611 465-729 (758)
8 1qvr_A CLPB protein; coiled co 99.9 4E-26 1.4E-30 271.1 18.6 274 255-610 532-823 (854)
9 4b4t_J 26S protease regulatory 99.9 3.2E-24 1.1E-28 234.0 18.9 220 277-609 148-372 (405)
10 4b4t_I 26S protease regulatory 99.9 2.3E-23 7.8E-28 228.4 19.5 219 278-609 183-406 (437)
11 4b4t_M 26S protease regulatory 99.9 3.5E-23 1.2E-27 228.3 19.4 220 278-609 182-405 (434)
12 4b4t_L 26S protease subunit RP 99.9 7.6E-23 2.6E-27 225.8 21.2 220 278-609 182-405 (437)
13 4b4t_H 26S protease regulatory 99.9 6.9E-23 2.4E-27 226.4 18.9 221 277-609 209-433 (467)
14 4b4t_K 26S protease regulatory 99.9 1.3E-22 4.4E-27 223.5 19.5 220 277-609 172-397 (428)
15 3syl_A Protein CBBX; photosynt 99.9 8.4E-22 2.9E-26 204.9 18.8 235 267-611 21-267 (309)
16 1ojl_A Transcriptional regulat 99.9 1.2E-22 4E-27 214.2 11.3 272 277-671 2-284 (304)
17 3m6a_A ATP-dependent protease 99.9 1.2E-21 4.1E-26 222.1 17.2 243 266-611 70-320 (543)
18 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.5E-20 5.1E-25 199.5 19.7 221 278-610 13-234 (322)
19 3eie_A Vacuolar protein sortin 99.8 8.4E-21 2.9E-25 200.7 16.9 221 278-610 19-239 (322)
20 2bjv_A PSP operon transcriptio 99.8 2.5E-20 8.6E-25 190.6 18.6 221 279-606 8-240 (265)
21 2qp9_X Vacuolar protein sortin 99.8 2.5E-20 8.5E-25 200.4 17.3 221 278-610 52-272 (355)
22 3cf2_A TER ATPase, transitiona 99.8 3.8E-21 1.3E-25 225.8 7.1 223 278-610 478-702 (806)
23 3cf0_A Transitional endoplasmi 99.8 8.3E-20 2.8E-24 191.5 15.7 221 278-610 16-240 (301)
24 3dzd_A Transcriptional regulat 99.8 2.9E-20 9.9E-25 201.1 12.4 197 331-604 153-359 (368)
25 1ny5_A Transcriptional regulat 99.8 5.2E-20 1.8E-24 200.2 12.4 197 331-605 161-369 (387)
26 2zan_A Vacuolar protein sortin 99.8 1.6E-19 5.4E-24 199.8 14.9 221 278-610 135-356 (444)
27 3cf2_A TER ATPase, transitiona 99.8 2.6E-19 8.8E-24 210.3 17.2 220 277-609 204-425 (806)
28 3d8b_A Fidgetin-like protein 1 99.8 1.1E-18 3.8E-23 187.4 20.6 223 278-611 85-307 (357)
29 3vfd_A Spastin; ATPase, microt 99.8 1.1E-18 3.8E-23 189.1 19.8 223 278-611 116-338 (389)
30 3b9p_A CG5977-PA, isoform A; A 99.8 1.3E-18 4.4E-23 180.4 19.5 223 278-610 22-244 (297)
31 3pfi_A Holliday junction ATP-d 99.8 5E-18 1.7E-22 179.1 23.2 206 278-607 30-235 (338)
32 2qz4_A Paraplegin; AAA+, SPG7, 99.8 9.5E-18 3.2E-22 169.7 20.7 220 278-607 7-230 (262)
33 2ce7_A Cell division protein F 99.8 3.9E-18 1.3E-22 190.4 19.3 217 278-608 17-238 (476)
34 3h4m_A Proteasome-activating n 99.8 3.8E-18 1.3E-22 175.6 16.7 219 278-609 18-241 (285)
35 1lv7_A FTSH; alpha/beta domain 99.8 9.4E-18 3.2E-22 170.7 19.2 220 278-609 13-235 (257)
36 2dhr_A FTSH; AAA+ protein, hex 99.7 6.6E-17 2.2E-21 181.5 21.7 218 278-607 32-252 (499)
37 3hu3_A Transitional endoplasmi 99.7 1.4E-17 4.9E-22 186.5 15.9 219 278-611 205-427 (489)
38 3pvs_A Replication-associated 99.7 7.1E-18 2.4E-22 187.0 12.1 193 278-606 27-222 (447)
39 1hqc_A RUVB; extended AAA-ATPa 99.7 1.8E-16 6.2E-21 165.5 22.1 204 278-604 13-216 (324)
40 3uk6_A RUVB-like 2; hexameric 99.7 2.2E-17 7.6E-22 175.7 15.3 259 278-671 45-359 (368)
41 1g8p_A Magnesium-chelatase 38 99.7 6.9E-17 2.4E-21 170.2 18.4 205 331-609 46-305 (350)
42 3t15_A Ribulose bisphosphate c 99.7 2.2E-17 7.4E-22 172.9 10.9 159 330-551 36-196 (293)
43 3u61_B DNA polymerase accessor 99.7 2E-16 6.8E-21 166.0 16.4 192 278-603 27-220 (324)
44 2x8a_A Nuclear valosin-contain 99.7 2.7E-16 9.2E-21 163.3 17.1 225 278-611 11-238 (274)
45 1d2n_A N-ethylmaleimide-sensit 99.7 6.5E-17 2.2E-21 166.1 12.0 176 330-603 64-246 (272)
46 2r44_A Uncharacterized protein 99.7 1.5E-16 5.2E-21 167.6 12.4 229 270-608 20-279 (331)
47 2chg_A Replication factor C sm 99.7 2.9E-15 9.8E-20 145.2 18.0 187 278-604 18-209 (226)
48 2r62_A Cell division protease 99.6 4.7E-18 1.6E-22 173.5 -2.7 218 278-606 12-233 (268)
49 1iy2_A ATP-dependent metallopr 99.6 2.7E-15 9.2E-20 154.8 17.8 217 278-608 41-262 (278)
50 1ixz_A ATP-dependent metallopr 99.6 4.2E-15 1.4E-19 150.9 18.9 218 278-609 17-239 (254)
51 3f9v_A Minichromosome maintena 99.6 6.8E-17 2.3E-21 185.1 3.5 258 270-609 288-570 (595)
52 2c9o_A RUVB-like 1; hexameric 99.6 7.7E-15 2.6E-19 162.6 19.7 105 277-412 37-143 (456)
53 3n70_A Transport activator; si 99.6 5.7E-16 1.9E-20 145.2 8.3 97 278-434 2-101 (145)
54 1ypw_A Transitional endoplasmi 99.6 1.4E-17 4.8E-22 196.8 -3.7 224 277-611 477-703 (806)
55 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.6E-14 8.8E-19 160.5 21.3 230 269-610 14-270 (500)
56 1njg_A DNA polymerase III subu 99.6 5E-14 1.7E-18 137.6 19.4 185 278-603 24-232 (250)
57 1l8q_A Chromosomal replication 99.6 8.3E-15 2.8E-19 154.1 13.8 172 331-605 38-214 (324)
58 1iqp_A RFCS; clamp loader, ext 99.6 1.5E-14 5E-19 150.3 15.1 186 278-603 26-216 (327)
59 2chq_A Replication factor C sm 99.6 8.1E-15 2.8E-19 151.7 11.8 186 279-604 19-209 (319)
60 3co5_A Putative two-component 99.5 1.3E-15 4.4E-20 142.6 3.4 96 278-434 5-100 (143)
61 1jr3_A DNA polymerase III subu 99.5 1.3E-13 4.6E-18 146.1 18.2 186 278-604 17-226 (373)
62 1sxj_D Activator 1 41 kDa subu 99.5 1.7E-14 6E-19 151.8 11.2 190 278-605 38-241 (353)
63 3te6_A Regulatory protein SIR3 99.5 8.1E-14 2.8E-18 148.1 15.8 223 278-610 21-290 (318)
64 1sxj_B Activator 1 37 kDa subu 99.5 9.9E-14 3.4E-18 143.8 15.1 185 278-604 22-214 (323)
65 2qby_B CDC6 homolog 3, cell di 99.5 1.1E-13 3.8E-18 147.3 15.7 204 277-606 20-252 (384)
66 1fnn_A CDC6P, cell division co 99.5 4.8E-13 1.6E-17 142.2 20.5 211 278-608 18-256 (389)
67 2v1u_A Cell division control p 99.5 9.4E-14 3.2E-18 147.1 14.9 213 277-607 19-257 (387)
68 3bos_A Putative DNA replicatio 99.5 1.9E-13 6.4E-18 135.1 15.9 169 331-608 53-226 (242)
69 1in4_A RUVB, holliday junction 99.5 1.3E-12 4.3E-17 138.9 23.1 205 279-607 27-231 (334)
70 3k1j_A LON protease, ATP-depen 99.5 9.8E-14 3.3E-18 159.0 15.3 146 388-606 194-355 (604)
71 1sxj_A Activator 1 95 kDa subu 99.5 5E-13 1.7E-17 150.3 20.4 211 278-604 40-257 (516)
72 2z4s_A Chromosomal replication 99.5 1.7E-13 5.7E-18 151.5 15.6 175 331-608 131-315 (440)
73 1jbk_A CLPB protein; beta barr 99.5 4.7E-14 1.6E-18 133.5 9.1 161 278-549 23-194 (195)
74 1ypw_A Transitional endoplasmi 99.5 1.8E-13 6.3E-18 161.8 14.2 218 278-608 205-424 (806)
75 1sxj_E Activator 1 40 kDa subu 99.4 6.5E-13 2.2E-17 140.4 15.4 186 279-604 16-242 (354)
76 1sxj_C Activator 1 40 kDa subu 99.4 5.3E-13 1.8E-17 141.5 14.5 183 279-602 27-215 (340)
77 1qvr_A CLPB protein; coiled co 99.4 1.1E-12 3.9E-17 155.8 18.1 207 279-606 172-392 (854)
78 3pxg_A Negative regulator of g 99.4 8.1E-13 2.8E-17 147.0 13.8 170 278-584 181-360 (468)
79 1r6b_X CLPA protein; AAA+, N-t 99.4 2E-12 6.7E-17 151.5 17.2 209 278-606 187-409 (758)
80 1a5t_A Delta prime, HOLB; zinc 99.4 3E-12 1E-16 136.1 16.7 158 331-600 25-206 (334)
81 2qby_A CDC6 homolog 1, cell di 99.4 2.9E-12 9.8E-17 135.4 15.8 211 278-607 21-253 (386)
82 2gno_A DNA polymerase III, gam 99.4 1.8E-12 6.1E-17 136.9 12.1 144 281-551 1-150 (305)
83 2p65_A Hypothetical protein PF 99.4 1E-12 3.5E-17 124.4 8.4 116 278-434 23-149 (187)
84 3f8t_A Predicted ATPase involv 99.4 3.4E-12 1.2E-16 141.4 13.8 235 270-609 207-466 (506)
85 3pxi_A Negative regulator of g 99.3 1.5E-12 5.3E-17 152.6 10.5 170 278-584 181-360 (758)
86 1w5s_A Origin recognition comp 99.1 1.7E-09 5.9E-14 115.8 17.0 220 277-606 22-273 (412)
87 4akg_A Glutathione S-transfera 98.7 2.6E-08 9E-13 129.6 12.7 205 330-605 1267-1488(2695)
88 2qen_A Walker-type ATPase; unk 98.7 9.7E-07 3.3E-11 91.8 19.4 52 278-365 13-64 (350)
89 3ec2_A DNA replication protein 98.6 1.8E-08 6.1E-13 96.6 4.9 82 331-434 39-127 (180)
90 2w58_A DNAI, primosome compone 98.5 4.4E-08 1.5E-12 95.3 2.5 37 331-367 55-94 (202)
91 4akg_A Glutathione S-transfera 98.4 2E-06 6.8E-11 112.3 17.6 67 331-410 646-712 (2695)
92 2fna_A Conserved hypothetical 98.4 5.1E-06 1.7E-10 86.4 17.2 36 331-366 31-66 (357)
93 1jr3_D DNA polymerase III, del 98.4 9.4E-07 3.2E-11 93.4 10.9 167 331-604 19-190 (343)
94 2kjq_A DNAA-related protein; s 98.3 4.9E-07 1.7E-11 85.3 6.6 69 331-434 37-108 (149)
95 1u0j_A DNA replication protein 98.2 2.5E-06 8.5E-11 88.4 9.6 25 331-355 105-129 (267)
96 3cmw_A Protein RECA, recombina 98.2 2.2E-06 7.4E-11 107.8 10.2 144 279-435 1022-1203(1706)
97 2qgz_A Helicase loader, putati 98.2 2.4E-07 8E-12 97.6 1.3 37 331-367 153-193 (308)
98 3vkg_A Dynein heavy chain, cyt 98.2 4.5E-06 1.6E-10 109.8 12.3 151 331-553 1305-1469(3245)
99 1tue_A Replication protein E1; 98.0 4.1E-06 1.4E-10 83.8 4.9 77 331-440 59-135 (212)
100 3vkg_A Dynein heavy chain, cyt 97.9 8.8E-05 3E-09 97.9 17.3 67 331-410 605-671 (3245)
101 2vhj_A Ntpase P4, P4; non- hyd 97.7 2.7E-05 9.1E-10 82.9 6.4 72 331-410 124-197 (331)
102 2r2a_A Uncharacterized protein 97.7 3.5E-05 1.2E-09 76.3 6.9 74 331-410 6-102 (199)
103 3cmu_A Protein RECA, recombina 97.4 0.00018 6.1E-09 91.8 7.6 77 330-410 1427-1520(2050)
104 1qhx_A CPT, protein (chloramph 97.2 0.00023 7.7E-09 67.2 4.5 34 331-364 4-37 (178)
105 3trf_A Shikimate kinase, SK; a 97.2 0.00021 7.2E-09 68.0 4.0 32 331-362 6-37 (185)
106 3upu_A ATP-dependent DNA helic 97.1 0.0014 4.9E-08 72.2 10.7 24 331-354 46-69 (459)
107 1ye8_A Protein THEP1, hypothet 97.0 0.0033 1.1E-07 60.7 10.9 27 332-358 2-28 (178)
108 3vaa_A Shikimate kinase, SK; s 97.0 0.00044 1.5E-08 67.1 4.1 32 331-362 26-57 (199)
109 3kb2_A SPBC2 prophage-derived 96.9 0.00054 1.9E-08 63.8 4.3 31 332-362 3-33 (173)
110 1zuh_A Shikimate kinase; alpha 96.9 0.00053 1.8E-08 64.3 3.9 32 331-362 8-39 (168)
111 2iyv_A Shikimate kinase, SK; t 96.9 0.00059 2E-08 64.9 3.8 32 331-362 3-34 (184)
112 1via_A Shikimate kinase; struc 96.8 0.00052 1.8E-08 65.0 3.3 30 331-360 5-34 (175)
113 3iij_A Coilin-interacting nucl 96.8 0.00063 2.2E-08 64.6 3.7 31 331-361 12-42 (180)
114 2rhm_A Putative kinase; P-loop 96.8 0.00069 2.4E-08 64.5 3.9 31 331-361 6-36 (193)
115 2orw_A Thymidine kinase; TMTK, 96.8 0.0016 5.4E-08 63.2 6.2 24 331-354 4-27 (184)
116 1qzm_A ATP-dependent protease 96.8 0.003 1E-07 55.4 7.2 85 538-630 1-85 (94)
117 2cdn_A Adenylate kinase; phosp 96.7 0.00098 3.4E-08 64.5 4.5 32 331-362 21-52 (201)
118 1tev_A UMP-CMP kinase; ploop, 96.7 0.0008 2.7E-08 63.8 3.6 30 331-360 4-33 (196)
119 1kag_A SKI, shikimate kinase I 96.7 0.00079 2.7E-08 63.1 3.5 30 331-360 5-34 (173)
120 2fz4_A DNA repair protein RAD2 96.7 0.0053 1.8E-07 61.7 9.6 34 331-364 109-142 (237)
121 2r8r_A Sensor protein; KDPD, P 96.7 0.024 8.3E-07 57.2 14.3 33 331-363 7-42 (228)
122 2ze6_A Isopentenyl transferase 96.7 0.0011 3.6E-08 67.5 4.3 33 332-364 3-35 (253)
123 1y63_A LMAJ004144AAA protein; 96.7 0.00083 2.8E-08 64.4 3.3 31 331-361 11-42 (184)
124 2ehv_A Hypothetical protein PH 96.6 0.0033 1.1E-07 62.0 7.5 21 331-351 31-51 (251)
125 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.6E-08 63.3 3.6 32 331-362 10-41 (196)
126 1e6c_A Shikimate kinase; phosp 96.6 0.001 3.5E-08 62.2 3.3 31 331-361 3-33 (173)
127 2b8t_A Thymidine kinase; deoxy 96.6 0.0038 1.3E-07 62.8 7.5 31 331-361 13-46 (223)
128 3lw7_A Adenylate kinase relate 96.6 0.0011 3.8E-08 61.2 3.4 30 331-361 2-31 (179)
129 3e1s_A Exodeoxyribonuclease V, 96.6 0.0038 1.3E-07 71.1 8.4 24 331-354 205-228 (574)
130 3t61_A Gluconokinase; PSI-biol 96.6 0.0014 4.8E-08 63.4 4.2 32 331-362 19-50 (202)
131 1aky_A Adenylate kinase; ATP:A 96.6 0.0012 4.1E-08 64.9 3.7 31 331-361 5-35 (220)
132 2pt5_A Shikimate kinase, SK; a 96.5 0.0014 4.9E-08 61.0 3.8 31 332-362 2-32 (168)
133 2bwj_A Adenylate kinase 5; pho 96.5 0.0014 4.7E-08 62.7 3.5 31 331-361 13-43 (199)
134 1zp6_A Hypothetical protein AT 96.5 0.0015 5E-08 62.3 3.7 36 331-366 10-45 (191)
135 1qf9_A UMP/CMP kinase, protein 96.5 0.0014 4.9E-08 61.9 3.5 31 331-361 7-37 (194)
136 3dl0_A Adenylate kinase; phosp 96.5 0.0016 5.3E-08 63.7 3.8 30 332-361 2-31 (216)
137 1ly1_A Polynucleotide kinase; 96.4 0.00095 3.3E-08 62.6 2.1 28 331-358 3-31 (181)
138 3cm0_A Adenylate kinase; ATP-b 96.4 0.0012 4.1E-08 62.6 2.9 30 331-360 5-34 (186)
139 1kht_A Adenylate kinase; phosp 96.4 0.0012 4.3E-08 62.4 2.9 25 331-355 4-28 (192)
140 3fb4_A Adenylate kinase; psych 96.4 0.0018 6E-08 63.2 3.9 31 332-362 2-32 (216)
141 2vli_A Antibiotic resistance p 96.4 0.0016 5.3E-08 61.6 3.3 29 331-359 6-34 (183)
142 3dm5_A SRP54, signal recogniti 96.4 0.015 5.1E-07 64.3 11.6 38 329-366 99-139 (443)
143 1knq_A Gluconate kinase; ALFA/ 96.4 0.0021 7.4E-08 60.4 4.2 34 331-366 9-42 (175)
144 3kl4_A SRP54, signal recogniti 96.4 0.016 5.4E-07 63.9 11.6 36 329-364 96-134 (433)
145 1ak2_A Adenylate kinase isoenz 96.4 0.0018 6.3E-08 64.4 3.7 31 331-361 17-47 (233)
146 1n0w_A DNA repair protein RAD5 96.3 0.0054 1.9E-07 60.3 6.9 35 331-365 25-68 (243)
147 1zd8_A GTP:AMP phosphotransfer 96.3 0.0018 6.1E-08 64.1 3.4 31 331-361 8-38 (227)
148 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.006 2.1E-07 62.0 7.3 36 331-366 5-43 (260)
149 1ukz_A Uridylate kinase; trans 96.3 0.002 7E-08 62.1 3.6 32 331-362 16-47 (203)
150 3be4_A Adenylate kinase; malar 96.2 0.0023 7.9E-08 63.0 3.6 31 331-361 6-36 (217)
151 1zak_A Adenylate kinase; ATP:A 96.2 0.0016 5.4E-08 64.1 2.3 30 331-360 6-35 (222)
152 3tlx_A Adenylate kinase 2; str 96.2 0.0024 8.1E-08 64.4 3.7 31 331-361 30-60 (243)
153 2p5t_B PEZT; postsegregational 96.2 0.0024 8.2E-08 64.6 3.7 38 330-367 32-69 (253)
154 2cvh_A DNA repair and recombin 96.2 0.011 3.8E-07 57.1 8.3 35 331-365 21-55 (220)
155 1e4v_A Adenylate kinase; trans 96.2 0.0027 9.4E-08 62.1 3.7 30 332-361 2-31 (214)
156 2zr9_A Protein RECA, recombina 96.2 0.0096 3.3E-07 63.6 8.2 79 331-409 62-153 (349)
157 4eun_A Thermoresistant glucoki 96.2 0.0031 1.1E-07 61.1 4.0 34 331-366 30-63 (200)
158 3crm_A TRNA delta(2)-isopenten 96.1 0.003 1E-07 67.1 4.1 34 331-364 6-39 (323)
159 2pbr_A DTMP kinase, thymidylat 96.1 0.0044 1.5E-07 58.7 4.9 31 332-362 2-35 (195)
160 3hr8_A Protein RECA; alpha and 96.1 0.02 6.9E-07 61.5 10.5 35 331-365 62-99 (356)
161 2pez_A Bifunctional 3'-phospho 96.1 0.0052 1.8E-07 58.2 5.3 36 331-366 6-44 (179)
162 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0091 3.1E-07 57.9 6.7 32 331-362 24-58 (235)
163 3sr0_A Adenylate kinase; phosp 96.0 0.0042 1.4E-07 61.5 4.3 33 332-366 2-34 (206)
164 1svm_A Large T antigen; AAA+ f 96.0 0.0042 1.4E-07 67.3 4.6 61 331-409 170-230 (377)
165 1gvn_B Zeta; postsegregational 96.0 0.0042 1.4E-07 64.4 4.4 36 331-366 34-69 (287)
166 2jaq_A Deoxyguanosine kinase; 96.0 0.0044 1.5E-07 59.2 4.1 28 332-359 2-29 (205)
167 1cke_A CK, MSSA, protein (cyti 96.0 0.0049 1.7E-07 60.3 4.5 29 331-359 6-34 (227)
168 3umf_A Adenylate kinase; rossm 96.0 0.0042 1.5E-07 62.2 4.0 33 331-365 30-62 (217)
169 2xb4_A Adenylate kinase; ATP-b 95.9 0.004 1.4E-07 61.7 3.3 30 332-361 2-31 (223)
170 3a8t_A Adenylate isopentenyltr 95.9 0.0035 1.2E-07 66.9 3.1 34 331-364 41-74 (339)
171 2if2_A Dephospho-COA kinase; a 95.9 0.004 1.4E-07 60.1 3.2 30 332-362 3-32 (204)
172 3ake_A Cytidylate kinase; CMP 95.8 0.0052 1.8E-07 59.0 4.0 31 332-362 4-34 (208)
173 1nks_A Adenylate kinase; therm 95.8 0.0033 1.1E-07 59.4 2.6 24 332-355 3-26 (194)
174 3cmu_A Protein RECA, recombina 95.8 0.014 4.8E-07 74.8 8.7 77 329-412 1080-1176(2050)
175 1uf9_A TT1252 protein; P-loop, 95.8 0.0051 1.7E-07 58.9 3.7 30 331-361 9-38 (203)
176 2v54_A DTMP kinase, thymidylat 95.8 0.006 2E-07 58.5 4.2 32 331-362 5-37 (204)
177 1u94_A RECA protein, recombina 95.8 0.027 9.1E-07 60.4 9.6 76 331-409 64-155 (356)
178 2z0h_A DTMP kinase, thymidylat 95.8 0.0077 2.6E-07 57.3 4.8 31 332-362 2-35 (197)
179 3uie_A Adenylyl-sulfate kinase 95.8 0.0069 2.4E-07 58.7 4.5 36 331-366 26-64 (200)
180 2a5y_B CED-4; apoptosis; HET: 95.7 0.11 3.8E-06 58.3 14.8 44 280-352 131-174 (549)
181 2plr_A DTMP kinase, probable t 95.7 0.01 3.4E-07 57.0 5.3 27 331-357 5-31 (213)
182 1jjv_A Dephospho-COA kinase; P 95.7 0.0053 1.8E-07 59.4 3.2 30 331-361 3-32 (206)
183 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0053 1.8E-07 66.0 3.4 30 331-360 25-54 (359)
184 2wwf_A Thymidilate kinase, put 95.6 0.0037 1.3E-07 60.3 2.0 31 331-361 11-41 (212)
185 1g5t_A COB(I)alamin adenosyltr 95.6 0.04 1.4E-06 54.4 9.2 32 330-361 28-62 (196)
186 3nwj_A ATSK2; P loop, shikimat 95.6 0.0061 2.1E-07 62.2 3.4 31 331-361 49-79 (250)
187 2yvu_A Probable adenylyl-sulfa 95.5 0.014 4.7E-07 55.6 5.5 35 330-364 13-50 (186)
188 2grj_A Dephospho-COA kinase; T 95.5 0.0072 2.5E-07 59.1 3.5 32 331-362 13-44 (192)
189 3jvv_A Twitching mobility prot 95.5 0.026 8.8E-07 60.5 8.0 24 331-354 124-147 (356)
190 3io5_A Recombination and repai 95.4 0.014 4.9E-07 61.9 5.8 80 330-410 28-126 (333)
191 1xp8_A RECA protein, recombina 95.4 0.027 9.2E-07 60.6 8.0 75 331-409 75-166 (366)
192 1q3t_A Cytidylate kinase; nucl 95.4 0.0085 2.9E-07 59.6 3.8 31 330-360 16-46 (236)
193 1nn5_A Similar to deoxythymidy 95.4 0.0046 1.6E-07 59.7 1.9 28 331-358 10-37 (215)
194 2bbw_A Adenylate kinase 4, AK4 95.4 0.011 3.6E-07 59.2 4.4 28 331-358 28-55 (246)
195 3foz_A TRNA delta(2)-isopenten 95.4 0.0087 3E-07 63.3 3.9 35 331-365 11-45 (316)
196 2h92_A Cytidylate kinase; ross 95.4 0.0082 2.8E-07 58.5 3.5 31 331-361 4-34 (219)
197 2z43_A DNA repair and recombin 95.4 0.021 7.2E-07 59.9 6.8 35 331-365 108-151 (324)
198 3r20_A Cytidylate kinase; stru 95.3 0.011 3.8E-07 59.8 4.4 30 331-360 10-39 (233)
199 3cmw_A Protein RECA, recombina 95.3 0.015 5E-07 73.7 6.3 80 330-409 732-824 (1706)
200 1vht_A Dephospho-COA kinase; s 95.3 0.009 3.1E-07 58.4 3.5 30 331-361 5-34 (218)
201 3exa_A TRNA delta(2)-isopenten 95.2 0.01 3.4E-07 62.9 3.7 34 331-364 4-37 (322)
202 2qor_A Guanylate kinase; phosp 95.1 0.011 3.8E-07 57.3 3.6 25 331-355 13-37 (204)
203 1uj2_A Uridine-cytidine kinase 95.1 0.012 4.1E-07 59.2 3.8 37 331-367 23-67 (252)
204 4e22_A Cytidylate kinase; P-lo 95.1 0.016 5.5E-07 58.6 4.7 29 331-359 28-56 (252)
205 1ltq_A Polynucleotide kinase; 95.1 0.0079 2.7E-07 61.7 2.4 31 331-361 3-34 (301)
206 2qt1_A Nicotinamide riboside k 95.1 0.0085 2.9E-07 58.0 2.5 30 331-360 22-52 (207)
207 3lda_A DNA repair protein RAD5 95.1 0.062 2.1E-06 58.5 9.6 35 331-365 179-222 (400)
208 3d3q_A TRNA delta(2)-isopenten 95.1 0.012 4E-07 63.0 3.7 33 331-363 8-40 (340)
209 1pzn_A RAD51, DNA repair and r 95.0 0.032 1.1E-06 59.4 7.0 35 331-365 132-175 (349)
210 1w36_D RECD, exodeoxyribonucle 95.0 0.041 1.4E-06 62.9 8.3 24 331-354 165-188 (608)
211 2pt7_A CAG-ALFA; ATPase, prote 94.9 0.059 2E-06 57.0 8.5 68 331-406 172-251 (330)
212 3eph_A TRNA isopentenyltransfe 94.8 0.014 4.8E-07 63.8 3.6 33 331-363 3-35 (409)
213 2qmh_A HPR kinase/phosphorylas 94.8 0.013 4.4E-07 58.3 2.8 39 327-366 31-69 (205)
214 2j41_A Guanylate kinase; GMP, 94.7 0.016 5.5E-07 55.5 3.4 24 331-354 7-30 (207)
215 1kgd_A CASK, peripheral plasma 94.7 0.019 6.4E-07 54.8 3.8 25 331-355 6-30 (180)
216 1m7g_A Adenylylsulfate kinase; 94.7 0.022 7.7E-07 55.5 4.4 35 331-365 26-64 (211)
217 1w4r_A Thymidine kinase; type 94.7 0.092 3.2E-06 51.8 8.7 33 331-363 21-56 (195)
218 2f6r_A COA synthase, bifunctio 94.6 0.018 6.2E-07 59.3 3.6 31 330-361 75-105 (281)
219 1v5w_A DMC1, meiotic recombina 94.6 0.051 1.8E-06 57.6 7.2 35 331-365 123-166 (343)
220 2bdt_A BH3686; alpha-beta prot 94.6 0.023 7.8E-07 54.1 4.0 32 331-363 3-34 (189)
221 3tau_A Guanylate kinase, GMP k 94.5 0.019 6.6E-07 56.0 3.4 25 331-355 9-33 (208)
222 3fdi_A Uncharacterized protein 94.5 0.027 9.4E-07 55.2 4.5 30 331-360 7-36 (201)
223 3asz_A Uridine kinase; cytidin 94.5 0.018 6E-07 55.8 3.0 25 331-355 7-31 (211)
224 2v3c_C SRP54, signal recogniti 94.5 0.046 1.6E-06 60.1 6.6 35 330-364 99-136 (432)
225 3tr0_A Guanylate kinase, GMP k 94.4 0.023 8E-07 54.4 3.7 24 331-354 8-31 (205)
226 3zvl_A Bifunctional polynucleo 94.4 0.012 4.2E-07 64.1 1.9 30 330-359 258-287 (416)
227 2axn_A 6-phosphofructo-2-kinas 94.3 0.049 1.7E-06 61.3 6.5 36 330-365 35-73 (520)
228 3b6e_A Interferon-induced heli 94.3 0.036 1.2E-06 53.1 4.7 24 331-354 49-72 (216)
229 2i1q_A DNA repair and recombin 94.2 0.05 1.7E-06 56.7 6.1 23 331-353 99-121 (322)
230 3c8u_A Fructokinase; YP_612366 94.1 0.027 9.1E-07 54.9 3.4 25 331-355 23-47 (208)
231 1xx6_A Thymidine kinase; NESG, 94.1 0.14 4.7E-06 50.1 8.5 24 331-354 9-32 (191)
232 3a00_A Guanylate kinase, GMP k 94.0 0.029 9.9E-07 53.6 3.4 25 331-355 2-26 (186)
233 1rz3_A Hypothetical protein rb 93.9 0.059 2E-06 52.2 5.4 34 331-364 23-59 (201)
234 1ex7_A Guanylate kinase; subst 93.8 0.042 1.5E-06 53.6 4.3 28 331-358 2-29 (186)
235 1lvg_A Guanylate kinase, GMP k 93.8 0.033 1.1E-06 54.0 3.5 25 331-355 5-29 (198)
236 1x6v_B Bifunctional 3'-phospho 93.7 0.049 1.7E-06 62.7 5.2 36 331-366 53-91 (630)
237 2j37_W Signal recognition part 93.7 0.2 6.7E-06 56.2 9.9 34 330-363 101-137 (504)
238 1sky_E F1-ATPase, F1-ATP synth 93.6 0.036 1.2E-06 61.7 3.7 24 331-354 152-175 (473)
239 1gtv_A TMK, thymidylate kinase 93.4 0.023 7.8E-07 54.8 1.6 24 332-355 2-25 (214)
240 2dr3_A UPF0273 protein PH0284; 93.3 0.081 2.8E-06 51.8 5.4 33 331-363 24-59 (247)
241 3b9q_A Chloroplast SRP recepto 93.2 0.096 3.3E-06 54.7 6.1 25 330-354 100-124 (302)
242 1bif_A 6-phosphofructo-2-kinas 93.2 0.1 3.5E-06 57.6 6.4 27 330-356 39-65 (469)
243 3ney_A 55 kDa erythrocyte memb 93.1 0.057 1.9E-06 53.2 3.8 26 330-355 19-44 (197)
244 1zu4_A FTSY; GTPase, signal re 93.0 0.2 6.8E-06 52.8 8.2 35 330-364 105-142 (320)
245 4a74_A DNA repair and recombin 93.0 0.056 1.9E-06 52.4 3.7 24 331-354 26-49 (231)
246 2gks_A Bifunctional SAT/APS ki 93.0 0.094 3.2E-06 59.3 5.9 35 331-365 373-410 (546)
247 3e70_C DPA, signal recognition 92.9 0.13 4.3E-06 54.5 6.5 25 330-354 129-153 (328)
248 3hdt_A Putative kinase; struct 92.9 0.067 2.3E-06 53.6 4.1 30 331-360 15-44 (223)
249 1odf_A YGR205W, hypothetical 3 92.9 0.14 4.8E-06 53.2 6.7 25 331-355 32-56 (290)
250 3gmt_A Adenylate kinase; ssgci 92.9 0.061 2.1E-06 54.3 3.8 30 332-361 10-39 (230)
251 3sfz_A APAF-1, apoptotic pepti 92.9 0.25 8.5E-06 59.6 9.8 46 278-353 125-170 (1249)
252 1znw_A Guanylate kinase, GMP k 92.9 0.062 2.1E-06 52.2 3.8 25 331-355 21-45 (207)
253 2r6a_A DNAB helicase, replicat 92.8 0.17 5.8E-06 55.5 7.5 33 331-363 204-240 (454)
254 1z6g_A Guanylate kinase; struc 92.8 0.062 2.1E-06 53.0 3.6 24 331-354 24-47 (218)
255 1z6t_A APAF-1, apoptotic prote 92.6 0.1 3.4E-06 58.6 5.4 44 279-352 126-169 (591)
256 3kta_A Chromosome segregation 92.6 0.085 2.9E-06 49.6 4.1 30 326-355 22-51 (182)
257 1p9r_A General secretion pathw 92.5 0.29 1E-05 53.5 8.9 25 331-355 168-192 (418)
258 4eaq_A DTMP kinase, thymidylat 92.5 0.068 2.3E-06 53.3 3.5 25 331-355 27-51 (229)
259 2jeo_A Uridine-cytidine kinase 92.4 0.082 2.8E-06 52.8 3.9 27 331-357 26-52 (245)
260 2fwr_A DNA repair protein RAD2 92.4 0.34 1.2E-05 52.6 9.2 34 331-364 109-142 (472)
261 2eyu_A Twitching motility prot 92.4 0.079 2.7E-06 54.1 3.8 24 331-354 26-49 (261)
262 4gp7_A Metallophosphoesterase; 92.2 0.091 3.1E-06 49.6 3.8 20 331-350 10-29 (171)
263 2j9r_A Thymidine kinase; TK1, 92.2 0.49 1.7E-05 47.3 9.2 32 331-362 29-63 (214)
264 1htw_A HI0065; nucleotide-bind 92.2 0.092 3.2E-06 49.6 3.8 24 331-354 34-57 (158)
265 1a7j_A Phosphoribulokinase; tr 92.1 0.064 2.2E-06 55.6 2.8 37 331-367 6-45 (290)
266 1m8p_A Sulfate adenylyltransfe 92.0 0.11 3.8E-06 59.1 4.8 35 331-365 397-435 (573)
267 4b3f_X DNA-binding protein smu 91.9 0.13 4.5E-06 59.0 5.4 24 331-354 206-230 (646)
268 3lnc_A Guanylate kinase, GMP k 91.9 0.061 2.1E-06 53.0 2.3 24 331-354 28-52 (231)
269 3vkw_A Replicase large subunit 91.9 0.27 9.3E-06 54.2 7.6 22 331-352 162-183 (446)
270 1s96_A Guanylate kinase, GMP k 91.8 0.099 3.4E-06 52.0 3.7 25 331-355 17-41 (219)
271 1vma_A Cell division protein F 91.7 0.15 5.2E-06 53.4 5.2 35 330-364 104-141 (306)
272 2yhs_A FTSY, cell division pro 91.7 0.14 4.8E-06 57.4 5.1 25 330-354 293-317 (503)
273 2zts_A Putative uncharacterize 91.7 0.19 6.5E-06 49.1 5.5 33 331-363 31-67 (251)
274 2v9p_A Replication protein E1; 91.6 0.11 3.6E-06 54.7 3.7 24 331-354 127-150 (305)
275 2ffh_A Protein (FFH); SRP54, s 91.5 0.3 1E-05 53.6 7.5 36 329-364 97-135 (425)
276 2i3b_A HCR-ntpase, human cance 91.5 0.1 3.6E-06 50.7 3.4 23 332-354 3-25 (189)
277 3aez_A Pantothenate kinase; tr 91.4 0.11 3.8E-06 54.5 3.8 25 331-355 91-115 (312)
278 1c9k_A COBU, adenosylcobinamid 91.4 0.12 4.3E-06 50.2 3.8 32 333-365 2-33 (180)
279 1rj9_A FTSY, signal recognitio 91.4 0.11 3.9E-06 54.2 3.8 25 330-354 102-126 (304)
280 1nlf_A Regulatory protein REPA 91.4 0.11 3.8E-06 52.8 3.7 24 331-354 31-54 (279)
281 1sq5_A Pantothenate kinase; P- 91.3 0.1 3.5E-06 54.3 3.4 25 331-355 81-105 (308)
282 1cr0_A DNA primase/helicase; R 91.2 0.12 4E-06 52.9 3.7 24 331-354 36-59 (296)
283 2ewv_A Twitching motility prot 91.0 0.12 4.2E-06 55.4 3.7 24 331-354 137-160 (372)
284 2px0_A Flagellar biosynthesis 90.9 0.13 4.5E-06 53.5 3.7 37 329-365 104-144 (296)
285 2wsm_A Hydrogenase expression/ 90.9 0.22 7.4E-06 48.1 5.0 25 331-355 31-55 (221)
286 3tqc_A Pantothenate kinase; bi 90.8 0.14 4.8E-06 54.1 3.9 25 331-355 93-117 (321)
287 2iut_A DNA translocase FTSK; n 90.8 1.1 3.7E-05 51.1 11.2 35 331-365 215-256 (574)
288 1j8m_F SRP54, signal recogniti 90.7 0.27 9.1E-06 51.2 5.8 36 330-365 98-136 (297)
289 2ocp_A DGK, deoxyguanosine kin 90.6 0.14 4.9E-06 50.7 3.5 25 331-355 3-27 (241)
290 1p5z_B DCK, deoxycytidine kina 90.6 0.07 2.4E-06 53.8 1.2 25 331-355 25-49 (263)
291 3p32_A Probable GTPase RV1496/ 90.5 0.32 1.1E-05 51.6 6.3 33 331-363 80-115 (355)
292 1u8z_A RAS-related protein RAL 90.5 0.16 5.6E-06 45.7 3.5 24 330-353 4-27 (168)
293 3ice_A Transcription terminati 90.3 0.31 1.1E-05 53.1 6.0 24 331-354 175-198 (422)
294 1xjc_A MOBB protein homolog; s 90.3 0.18 6.1E-06 48.5 3.7 24 331-354 5-28 (169)
295 1kao_A RAP2A; GTP-binding prot 90.2 0.17 6E-06 45.5 3.4 23 331-353 4-26 (167)
296 2p6r_A Afuhel308 helicase; pro 90.1 0.82 2.8E-05 52.6 9.8 18 331-348 41-58 (702)
297 2dyk_A GTP-binding protein; GT 90.0 0.18 6.1E-06 45.4 3.4 23 331-353 2-24 (161)
298 3tqf_A HPR(Ser) kinase; transf 90.0 0.17 5.7E-06 49.3 3.3 34 329-363 15-48 (181)
299 1ek0_A Protein (GTP-binding pr 90.0 0.17 5.9E-06 45.7 3.3 23 331-353 4-26 (170)
300 2ce2_X GTPase HRAS; signaling 90.0 0.18 6.2E-06 45.2 3.3 23 331-353 4-26 (166)
301 1nrj_B SR-beta, signal recogni 89.9 0.19 6.6E-06 48.2 3.6 24 331-354 13-36 (218)
302 2a5j_A RAS-related protein RAB 89.9 0.24 8.1E-06 46.6 4.2 24 330-353 21-44 (191)
303 1g8f_A Sulfate adenylyltransfe 89.9 0.15 5.2E-06 57.2 3.3 26 331-356 396-421 (511)
304 2og2_A Putative signal recogni 89.8 0.19 6.4E-06 54.0 3.8 25 330-354 157-181 (359)
305 2gk6_A Regulator of nonsense t 89.7 0.27 9.2E-06 56.3 5.3 24 331-354 196-219 (624)
306 2f1r_A Molybdopterin-guanine d 89.7 0.12 4E-06 49.6 1.9 25 331-355 3-27 (171)
307 2f9l_A RAB11B, member RAS onco 89.7 0.19 6.5E-06 47.8 3.4 24 331-354 6-29 (199)
308 2zj8_A DNA helicase, putative 89.7 1.5 5.3E-05 50.5 11.6 18 331-348 40-57 (720)
309 1oix_A RAS-related protein RAB 89.6 0.18 6.1E-06 47.9 3.1 24 331-354 30-53 (191)
310 4i1u_A Dephospho-COA kinase; s 89.5 0.19 6.5E-06 50.0 3.4 32 331-363 10-41 (210)
311 4edh_A DTMP kinase, thymidylat 89.5 0.19 6.7E-06 49.7 3.4 25 331-355 7-31 (213)
312 1lw7_A Transcriptional regulat 89.5 0.18 6.1E-06 53.6 3.4 26 331-356 171-196 (365)
313 1z2a_A RAS-related protein RAB 89.5 0.21 7.2E-06 45.2 3.4 23 331-353 6-28 (168)
314 1np6_A Molybdopterin-guanine d 89.4 0.21 7E-06 48.0 3.4 24 331-354 7-30 (174)
315 2gza_A Type IV secretion syste 89.4 0.15 5.1E-06 54.4 2.7 25 331-355 176-200 (361)
316 2lkc_A Translation initiation 89.3 0.26 8.9E-06 45.2 4.0 23 330-352 8-30 (178)
317 3cr8_A Sulfate adenylyltranfer 89.1 0.16 5.5E-06 57.6 2.8 36 331-366 370-409 (552)
318 1c1y_A RAS-related protein RAP 89.1 0.24 8.1E-06 44.8 3.4 23 331-353 4-26 (167)
319 2wji_A Ferrous iron transport 89.1 0.22 7.6E-06 45.9 3.3 23 331-353 4-26 (165)
320 3tif_A Uncharacterized ABC tra 89.0 0.16 5.3E-06 51.0 2.3 25 331-355 32-56 (235)
321 3ihw_A Centg3; RAS, centaurin, 89.0 0.25 8.4E-06 46.7 3.6 25 329-353 19-43 (184)
322 2ged_A SR-beta, signal recogni 89.0 0.25 8.6E-06 46.3 3.6 24 331-354 49-72 (193)
323 2oap_1 GSPE-2, type II secreti 88.9 0.16 5.5E-06 57.0 2.6 33 331-363 261-295 (511)
324 3sop_A Neuronal-specific septi 88.8 0.22 7.6E-06 51.0 3.4 24 331-354 3-26 (270)
325 1z06_A RAS-related protein RAB 88.8 0.24 8.1E-06 46.4 3.4 24 330-353 20-43 (189)
326 2cbz_A Multidrug resistance-as 88.8 0.16 5.5E-06 50.9 2.3 24 331-354 32-55 (237)
327 3lxx_A GTPase IMAP family memb 88.8 1.3 4.3E-05 43.6 8.8 24 330-353 29-52 (239)
328 3b85_A Phosphate starvation-in 88.7 0.18 6.2E-06 49.7 2.5 23 331-353 23-45 (208)
329 2onk_A Molybdate/tungstate ABC 88.7 0.23 8E-06 50.0 3.4 28 328-355 22-49 (240)
330 1xti_A Probable ATP-dependent 88.7 1 3.4E-05 46.9 8.4 21 331-351 46-66 (391)
331 2h17_A ADP-ribosylation factor 88.7 0.22 7.4E-06 46.5 3.0 24 330-353 21-44 (181)
332 2nzj_A GTP-binding protein REM 88.7 0.25 8.4E-06 45.1 3.3 22 331-352 5-26 (175)
333 2pcj_A ABC transporter, lipopr 88.7 0.2 6.8E-06 49.8 2.8 25 331-355 31-55 (224)
334 1z0j_A RAB-22, RAS-related pro 88.6 0.26 8.9E-06 44.6 3.4 24 331-354 7-30 (170)
335 4ag6_A VIRB4 ATPase, type IV s 88.6 0.4 1.4E-05 51.2 5.3 34 330-363 35-71 (392)
336 3v9p_A DTMP kinase, thymidylat 88.5 0.2 6.7E-06 50.3 2.6 24 331-354 26-49 (227)
337 2wjg_A FEOB, ferrous iron tran 88.5 0.28 9.5E-06 45.6 3.6 23 331-353 8-30 (188)
338 2a9k_A RAS-related protein RAL 88.5 0.26 9E-06 45.3 3.4 24 330-353 18-41 (187)
339 3con_A GTPase NRAS; structural 88.5 0.25 8.7E-06 46.1 3.3 25 329-353 20-44 (190)
340 2zej_A Dardarin, leucine-rich 88.4 0.2 7E-06 47.0 2.5 22 331-352 3-24 (184)
341 1g16_A RAS-related protein SEC 88.3 0.27 9.2E-06 44.5 3.3 23 331-353 4-26 (170)
342 1z08_A RAS-related protein RAB 88.3 0.28 9.6E-06 44.5 3.4 23 331-353 7-29 (170)
343 1wms_A RAB-9, RAB9, RAS-relate 88.3 0.28 9.5E-06 45.0 3.4 23 331-353 8-30 (177)
344 1ky3_A GTP-binding protein YPT 88.2 0.28 9.7E-06 44.9 3.4 23 331-353 9-31 (182)
345 3tmk_A Thymidylate kinase; pho 88.2 0.39 1.3E-05 47.7 4.6 27 331-357 6-32 (216)
346 3bh0_A DNAB-like replicative h 88.2 0.43 1.5E-05 49.8 5.1 33 331-363 69-104 (315)
347 3c5c_A RAS-like protein 12; GD 88.1 0.28 9.7E-06 46.2 3.4 23 331-353 22-44 (187)
348 1m2o_B GTP-binding protein SAR 88.1 0.28 9.5E-06 46.4 3.3 22 331-352 24-45 (190)
349 3lv8_A DTMP kinase, thymidylat 88.1 0.3 1E-05 49.3 3.7 25 331-355 28-52 (236)
350 1r2q_A RAS-related protein RAB 88.1 0.3 1E-05 44.1 3.4 23 331-353 7-29 (170)
351 3bc1_A RAS-related protein RAB 88.0 0.3 1E-05 45.2 3.4 23 331-353 12-34 (195)
352 1r8s_A ADP-ribosylation factor 88.0 0.31 1E-05 44.1 3.4 22 332-353 2-23 (164)
353 2erx_A GTP-binding protein DI- 87.9 0.29 9.9E-06 44.3 3.2 22 331-352 4-25 (172)
354 1b0u_A Histidine permease; ABC 87.9 0.2 6.9E-06 51.1 2.3 25 331-355 33-57 (262)
355 1mv5_A LMRA, multidrug resista 87.9 0.2 6.8E-06 50.4 2.3 29 326-354 23-52 (243)
356 3q85_A GTP-binding protein REM 87.9 0.29 1E-05 44.4 3.2 22 331-352 3-24 (169)
357 1upt_A ARL1, ADP-ribosylation 87.9 0.34 1.1E-05 44.0 3.6 22 331-352 8-29 (171)
358 2wjy_A Regulator of nonsense t 87.7 0.43 1.5E-05 56.4 5.3 24 331-354 372-395 (800)
359 2ff7_A Alpha-hemolysin translo 87.7 0.21 7.2E-06 50.5 2.3 25 331-355 36-60 (247)
360 1wp9_A ATP-dependent RNA helic 87.7 0.87 3E-05 48.1 7.2 32 332-363 25-60 (494)
361 1g6h_A High-affinity branched- 87.7 0.21 7.2E-06 50.7 2.3 25 331-355 34-58 (257)
362 2hf9_A Probable hydrogenase ni 87.7 0.57 2E-05 45.2 5.3 24 331-354 39-62 (226)
363 2y8e_A RAB-protein 6, GH09086P 87.6 0.3 1E-05 44.6 3.1 23 331-353 15-37 (179)
364 2fn4_A P23, RAS-related protei 87.6 0.34 1.2E-05 44.3 3.5 23 331-353 10-32 (181)
365 2d2e_A SUFC protein; ABC-ATPas 87.6 0.31 1.1E-05 49.2 3.4 23 331-353 30-52 (250)
366 2pze_A Cystic fibrosis transme 87.6 0.22 7.5E-06 49.7 2.3 25 331-355 35-59 (229)
367 1sgw_A Putative ABC transporte 87.6 0.21 7.2E-06 49.5 2.2 24 331-354 36-59 (214)
368 3q72_A GTP-binding protein RAD 87.5 0.31 1.1E-05 44.1 3.2 21 331-351 3-23 (166)
369 1z0f_A RAB14, member RAS oncog 87.5 0.34 1.2E-05 44.3 3.4 24 331-354 16-39 (179)
370 1ls1_A Signal recognition part 87.5 0.55 1.9E-05 48.6 5.4 35 329-363 97-134 (295)
371 2efe_B Small GTP-binding prote 87.4 0.32 1.1E-05 44.7 3.3 23 331-353 13-35 (181)
372 2h57_A ADP-ribosylation factor 87.4 0.25 8.5E-06 46.3 2.5 24 330-353 21-44 (190)
373 4dsu_A GTPase KRAS, isoform 2B 87.4 0.34 1.2E-05 44.8 3.4 24 331-354 5-28 (189)
374 2gf9_A RAS-related protein RAB 87.4 0.38 1.3E-05 45.0 3.8 23 331-353 23-45 (189)
375 2ghi_A Transport protein; mult 87.4 0.23 7.7E-06 50.6 2.3 30 325-354 40-70 (260)
376 2ixe_A Antigen peptide transpo 87.3 0.23 7.8E-06 50.9 2.3 25 331-355 46-70 (271)
377 1yrb_A ATP(GTP)binding protein 87.3 0.62 2.1E-05 46.2 5.4 33 331-363 15-49 (262)
378 4bas_A ADP-ribosylation factor 87.3 0.31 1E-05 45.7 3.0 23 330-352 17-39 (199)
379 3gfo_A Cobalt import ATP-bindi 87.2 0.23 7.9E-06 51.2 2.3 31 325-355 28-59 (275)
380 1gm5_A RECG; helicase, replica 87.2 1 3.4E-05 53.2 7.9 21 331-351 390-410 (780)
381 2zu0_C Probable ATP-dependent 87.2 0.33 1.1E-05 49.6 3.4 24 331-354 47-70 (267)
382 2olj_A Amino acid ABC transpor 87.2 0.23 8E-06 50.8 2.3 25 331-355 51-75 (263)
383 3fvq_A Fe(3+) IONS import ATP- 87.2 0.28 9.4E-06 52.7 2.9 25 331-355 31-55 (359)
384 3tw8_B RAS-related protein RAB 87.2 0.32 1.1E-05 44.5 3.0 22 331-352 10-31 (181)
385 2xau_A PRE-mRNA-splicing facto 87.1 1.2 4.1E-05 52.4 8.5 22 331-352 110-131 (773)
386 2hxs_A RAB-26, RAS-related pro 87.1 0.33 1.1E-05 44.5 3.1 23 331-353 7-29 (178)
387 3kkq_A RAS-related protein M-R 87.1 0.38 1.3E-05 44.5 3.5 24 330-353 18-41 (183)
388 1ji0_A ABC transporter; ATP bi 87.1 0.29 1E-05 49.1 2.9 25 331-355 33-57 (240)
389 2qi9_C Vitamin B12 import ATP- 87.0 0.24 8.4E-06 50.2 2.3 25 331-355 27-51 (249)
390 1m7b_A RND3/RHOE small GTP-bin 87.0 0.35 1.2E-05 45.2 3.3 23 331-353 8-30 (184)
391 4tmk_A Protein (thymidylate ki 87.0 0.34 1.2E-05 48.0 3.3 24 331-354 4-27 (213)
392 3ld9_A DTMP kinase, thymidylat 86.9 0.41 1.4E-05 47.9 3.8 26 331-356 22-47 (223)
393 1f2t_A RAD50 ABC-ATPase; DNA d 86.9 0.5 1.7E-05 43.8 4.2 29 326-354 19-47 (149)
394 3thx_B DNA mismatch repair pro 86.9 1.6 5.4E-05 52.4 9.5 23 331-353 674-696 (918)
395 3t1o_A Gliding protein MGLA; G 86.9 0.37 1.3E-05 44.8 3.4 24 331-354 15-38 (198)
396 3clv_A RAB5 protein, putative; 86.9 0.4 1.4E-05 44.5 3.6 23 331-353 8-30 (208)
397 2oil_A CATX-8, RAS-related pro 86.9 0.37 1.3E-05 45.1 3.4 23 331-353 26-48 (193)
398 2xxa_A Signal recognition part 86.9 0.58 2E-05 51.3 5.4 38 329-366 99-140 (433)
399 1svi_A GTP-binding protein YSX 86.9 0.37 1.3E-05 45.1 3.3 23 330-352 23-45 (195)
400 4g1u_C Hemin import ATP-bindin 86.8 0.31 1E-05 49.9 2.9 24 331-354 38-61 (266)
401 2bme_A RAB4A, RAS-related prot 86.8 0.37 1.3E-05 44.6 3.3 23 331-353 11-33 (186)
402 2ihy_A ABC transporter, ATP-bi 86.7 0.26 8.8E-06 50.9 2.3 25 331-355 48-72 (279)
403 3thx_A DNA mismatch repair pro 86.7 1.7 6E-05 52.1 9.7 23 331-353 663-685 (934)
404 2bov_A RAla, RAS-related prote 86.6 0.41 1.4E-05 45.1 3.5 24 330-353 14-37 (206)
405 1vt4_I APAF-1 related killer D 86.6 0.52 1.8E-05 57.4 5.1 44 278-352 129-172 (1221)
406 2gj8_A MNME, tRNA modification 86.6 0.37 1.3E-05 44.8 3.2 23 331-353 5-27 (172)
407 2g6b_A RAS-related protein RAB 86.6 0.4 1.4E-05 44.0 3.4 23 331-353 11-33 (180)
408 1z47_A CYSA, putative ABC-tran 86.6 0.32 1.1E-05 52.0 3.1 31 325-355 35-66 (355)
409 1mh1_A RAC1; GTP-binding, GTPa 86.5 0.41 1.4E-05 44.1 3.4 23 331-353 6-28 (186)
410 2nq2_C Hypothetical ABC transp 86.5 0.26 9E-06 50.0 2.3 25 331-355 32-56 (253)
411 2cxx_A Probable GTP-binding pr 86.5 0.36 1.2E-05 44.7 3.1 22 331-352 2-23 (190)
412 1f6b_A SAR1; gtpases, N-termin 86.5 0.37 1.3E-05 46.0 3.1 22 331-352 26-47 (198)
413 2yyz_A Sugar ABC transporter, 86.3 0.34 1.2E-05 51.9 3.1 25 331-355 30-54 (359)
414 2it1_A 362AA long hypothetical 86.3 0.34 1.2E-05 52.0 3.1 25 331-355 30-54 (362)
415 1vpl_A ABC transporter, ATP-bi 86.3 0.34 1.2E-05 49.3 2.9 25 331-355 42-66 (256)
416 2yz2_A Putative ABC transporte 86.2 0.34 1.2E-05 49.4 2.9 25 331-355 34-58 (266)
417 3rlf_A Maltose/maltodextrin im 86.2 0.34 1.2E-05 52.4 3.1 25 331-355 30-54 (381)
418 3bwd_D RAC-like GTP-binding pr 86.2 0.43 1.5E-05 43.8 3.4 23 331-353 9-31 (182)
419 2q6t_A DNAB replication FORK h 86.2 0.66 2.2E-05 50.7 5.3 33 331-363 201-237 (444)
420 1x3s_A RAS-related protein RAB 86.1 0.4 1.4E-05 44.6 3.1 24 330-353 15-38 (195)
421 3tkl_A RAS-related protein RAB 86.1 0.43 1.5E-05 44.5 3.4 23 331-353 17-39 (196)
422 1v43_A Sugar-binding transport 86.1 0.35 1.2E-05 52.1 3.1 25 331-355 38-62 (372)
423 2atv_A RERG, RAS-like estrogen 86.0 0.46 1.6E-05 44.8 3.6 23 331-353 29-51 (196)
424 3pqc_A Probable GTP-binding pr 86.0 0.41 1.4E-05 44.5 3.1 23 331-353 24-46 (195)
425 2www_A Methylmalonic aciduria 86.0 0.94 3.2E-05 48.0 6.3 24 331-354 75-98 (349)
426 1e9r_A Conjugal transfer prote 86.0 0.6 2.1E-05 50.4 4.9 34 330-363 53-89 (437)
427 3k53_A Ferrous iron transport 86.0 0.4 1.4E-05 48.4 3.3 23 331-353 4-26 (271)
428 3e2i_A Thymidine kinase; Zn-bi 85.9 1 3.5E-05 45.1 6.1 31 331-361 29-62 (219)
429 1g29_1 MALK, maltose transport 85.9 0.36 1.2E-05 51.9 3.1 25 331-355 30-54 (372)
430 2iwr_A Centaurin gamma 1; ANK 85.9 0.34 1.2E-05 44.6 2.5 23 331-353 8-30 (178)
431 3t5g_A GTP-binding protein RHE 85.8 0.45 1.5E-05 43.9 3.3 22 331-352 7-28 (181)
432 1moz_A ARL1, ADP-ribosylation 85.7 0.34 1.1E-05 44.8 2.4 21 331-351 19-39 (183)
433 2p5s_A RAS and EF-hand domain 85.7 0.48 1.6E-05 44.9 3.5 24 330-353 28-51 (199)
434 1vg8_A RAS-related protein RAB 85.7 0.46 1.6E-05 44.8 3.4 24 331-354 9-32 (207)
435 3d31_A Sulfate/molybdate ABC t 85.5 0.31 1E-05 52.1 2.2 25 331-355 27-51 (348)
436 1ksh_A ARF-like protein 2; sma 85.4 0.47 1.6E-05 44.1 3.2 22 331-352 19-40 (186)
437 1zd9_A ADP-ribosylation factor 85.4 0.48 1.6E-05 44.4 3.3 24 330-353 22-45 (188)
438 3reg_A RHO-like small GTPase; 85.4 0.49 1.7E-05 44.4 3.4 24 331-354 24-47 (194)
439 3dz8_A RAS-related protein RAB 85.4 0.47 1.6E-05 44.5 3.3 24 331-354 24-47 (191)
440 2gco_A H9, RHO-related GTP-bin 85.3 0.68 2.3E-05 44.0 4.4 24 330-353 25-48 (201)
441 2fg5_A RAB-22B, RAS-related pr 85.3 0.48 1.6E-05 44.6 3.2 23 331-353 24-46 (192)
442 2gf0_A GTP-binding protein DI- 85.3 0.51 1.8E-05 44.1 3.4 23 331-353 9-31 (199)
443 2pjz_A Hypothetical protein ST 85.3 0.36 1.2E-05 49.3 2.5 24 331-354 31-54 (263)
444 3ch4_B Pmkase, phosphomevalona 85.3 0.78 2.7E-05 45.4 4.8 38 328-365 9-47 (202)
445 1pui_A ENGB, probable GTP-bind 85.2 0.28 9.5E-06 46.7 1.6 22 331-352 27-48 (210)
446 2bcg_Y Protein YP2, GTP-bindin 85.1 0.49 1.7E-05 44.9 3.3 23 331-353 9-31 (206)
447 2npi_A Protein CLP1; CLP1-PCF1 85.1 0.41 1.4E-05 52.9 3.1 24 331-354 139-162 (460)
448 2qm8_A GTPase/ATPase; G protei 85.1 0.52 1.8E-05 49.7 3.8 24 331-354 56-79 (337)
449 2p67_A LAO/AO transport system 85.1 0.7 2.4E-05 48.7 4.7 24 331-354 57-80 (341)
450 2xgj_A ATP-dependent RNA helic 85.0 5.3 0.00018 48.4 12.9 19 331-349 102-120 (1010)
451 3oes_A GTPase rhebl1; small GT 85.0 0.5 1.7E-05 44.8 3.3 25 330-354 24-48 (201)
452 1zbd_A Rabphilin-3A; G protein 85.0 0.5 1.7E-05 44.7 3.2 23 331-353 9-31 (203)
453 1fzq_A ADP-ribosylation factor 84.8 0.5 1.7E-05 44.2 3.1 23 331-353 17-39 (181)
454 3gd7_A Fusion complex of cysti 84.7 0.43 1.5E-05 51.7 2.9 24 331-354 48-71 (390)
455 2vp4_A Deoxynucleoside kinase; 84.7 0.39 1.3E-05 47.4 2.4 23 331-353 21-43 (230)
456 2fh5_B SR-beta, signal recogni 84.6 0.56 1.9E-05 44.8 3.4 24 331-354 8-31 (214)
457 4a1f_A DNAB helicase, replicat 84.6 0.81 2.8E-05 48.6 4.9 33 331-363 47-82 (338)
458 3cph_A RAS-related protein SEC 84.5 0.57 1.9E-05 44.4 3.4 23 331-353 21-43 (213)
459 1gwn_A RHO-related GTP-binding 84.4 0.55 1.9E-05 45.3 3.3 23 331-353 29-51 (205)
460 2eyq_A TRCF, transcription-rep 84.4 2.1 7.1E-05 52.6 9.1 21 331-351 625-645 (1151)
461 1zj6_A ADP-ribosylation factor 84.2 0.59 2E-05 43.6 3.4 22 331-352 17-38 (187)
462 2obl_A ESCN; ATPase, hydrolase 84.2 0.77 2.6E-05 48.8 4.6 27 331-357 72-98 (347)
463 3nh6_A ATP-binding cassette SU 84.2 0.31 1E-05 51.1 1.4 25 331-355 81-105 (306)
464 2ew1_A RAS-related protein RAB 84.1 0.57 2E-05 45.0 3.3 23 331-353 27-49 (201)
465 1oxx_K GLCV, glucose, ABC tran 84.1 0.31 1.1E-05 52.0 1.5 25 331-355 32-56 (353)
466 1ko7_A HPR kinase/phosphatase; 84.1 0.56 1.9E-05 49.5 3.4 31 329-360 143-173 (314)
467 1tf7_A KAIC; homohexamer, hexa 84.1 0.57 1.9E-05 52.3 3.7 24 331-354 282-305 (525)
468 2xzl_A ATP-dependent helicase 84.1 0.58 2E-05 55.3 3.9 23 330-352 375-397 (802)
469 2bbs_A Cystic fibrosis transme 84.0 0.4 1.4E-05 49.8 2.2 24 331-354 65-88 (290)
470 3qks_A DNA double-strand break 84.0 0.8 2.7E-05 44.6 4.2 31 326-356 19-49 (203)
471 2atx_A Small GTP binding prote 83.9 0.6 2E-05 43.7 3.2 23 331-353 19-41 (194)
472 1knx_A Probable HPR(Ser) kinas 83.9 0.64 2.2E-05 49.0 3.7 38 328-366 145-182 (312)
473 2dpy_A FLII, flagellum-specifi 83.9 0.79 2.7E-05 50.3 4.6 27 331-357 158-184 (438)
474 1tf7_A KAIC; homohexamer, hexa 83.8 0.59 2E-05 52.2 3.7 35 331-365 40-78 (525)
475 2b6h_A ADP-ribosylation factor 83.8 0.62 2.1E-05 44.1 3.3 21 331-351 30-50 (192)
476 3hjn_A DTMP kinase, thymidylat 83.7 0.99 3.4E-05 43.8 4.8 29 333-361 3-34 (197)
477 2fu5_C RAS-related protein RAB 83.7 0.38 1.3E-05 44.5 1.7 22 331-352 9-30 (183)
478 2zpa_A Uncharacterized protein 83.6 1.6 5.5E-05 50.5 7.2 27 331-357 193-219 (671)
479 2fv8_A H6, RHO-related GTP-bin 83.6 0.61 2.1E-05 44.5 3.2 24 330-353 25-48 (207)
480 2cjw_A GTP-binding protein GEM 83.5 0.64 2.2E-05 44.1 3.2 22 331-352 7-28 (192)
481 2il1_A RAB12; G-protein, GDP, 83.4 0.6 2.1E-05 44.0 3.0 22 331-352 27-48 (192)
482 2j1l_A RHO-related GTP-binding 83.4 0.61 2.1E-05 44.9 3.1 23 330-352 34-56 (214)
483 2q3h_A RAS homolog gene family 83.4 0.66 2.3E-05 43.7 3.3 23 330-352 20-42 (201)
484 2o52_A RAS-related protein RAB 83.1 0.63 2.2E-05 44.2 3.1 22 331-352 26-47 (200)
485 2j0v_A RAC-like GTP-binding pr 83.1 0.67 2.3E-05 44.2 3.3 23 331-353 10-32 (212)
486 3cbq_A GTP-binding protein REM 83.0 0.51 1.8E-05 44.9 2.4 21 331-351 24-44 (195)
487 2hup_A RAS-related protein RAB 83.0 0.68 2.3E-05 44.1 3.2 23 331-353 30-52 (201)
488 2f7s_A C25KG, RAS-related prot 82.9 0.68 2.3E-05 44.3 3.2 22 331-352 26-47 (217)
489 3llu_A RAS-related GTP-binding 82.9 0.65 2.2E-05 43.9 3.1 24 330-353 20-43 (196)
490 4hlc_A DTMP kinase, thymidylat 82.7 0.73 2.5E-05 45.1 3.4 24 332-355 4-27 (205)
491 3bgw_A DNAB-like replicative h 82.7 0.97 3.3E-05 49.6 4.7 33 331-363 198-233 (444)
492 3rc3_A ATP-dependent RNA helic 82.7 1.4 4.7E-05 51.1 6.2 19 330-348 155-173 (677)
493 3qf7_A RAD50; ABC-ATPase, ATPa 82.6 0.62 2.1E-05 49.7 3.0 29 326-354 19-47 (365)
494 2qu8_A Putative nucleolar GTP- 82.6 0.76 2.6E-05 44.7 3.4 23 330-352 29-51 (228)
495 2o8b_B DNA mismatch repair pro 82.5 1.3 4.3E-05 53.9 6.0 21 331-351 790-810 (1022)
496 4gl2_A Interferon-induced heli 82.4 1.1 3.7E-05 51.1 5.2 23 331-353 23-45 (699)
497 2x77_A ADP-ribosylation factor 82.4 0.57 1.9E-05 43.7 2.4 21 331-351 23-43 (189)
498 2qnr_A Septin-2, protein NEDD5 82.2 0.63 2.1E-05 48.3 2.9 23 331-353 19-41 (301)
499 3cpj_B GTP-binding protein YPT 82.2 0.78 2.7E-05 44.4 3.4 23 331-353 14-36 (223)
500 4gzl_A RAS-related C3 botulinu 82.1 0.79 2.7E-05 43.7 3.4 23 331-353 31-53 (204)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=100.00 E-value=6.1e-42 Score=367.89 Aligned_cols=344 Identities=58% Similarity=0.959 Sum_probs=275.2
Q ss_pred CCCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcH
Q 005670 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (684)
Q Consensus 264 ~~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGK 343 (684)
..++|.++.+.|++.|+||+++|+.|..++..++++...... ...+..++.++||+|||||||
T Consensus 2 ~~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-----------------~~~~~~~~~~vll~GppGtGK 64 (363)
T 3hws_A 2 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT-----------------SNGVELGKSNILLIGPTGSGK 64 (363)
T ss_dssp CCCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSC-----------------SSSCCCCCCCEEEECCTTSSH
T ss_pred CCCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccc-----------------cccccCCCCeEEEECCCCCCH
Confidence 357899999999999999999999999999888776443221 112223458999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcch
Q 005670 344 TLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 344 T~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (684)
|++|+++|+.++.+|+.++|+++.+++|+|++....++.++..+.+.+..+.++||||||||++.+.+...+.+.+..++
T Consensus 65 T~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 144 (363)
T 3hws_A 65 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGE 144 (363)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred HHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchH
Confidence 99999999999999999999999878899988778889999888887888889999999999999876665556666777
Q ss_pred HHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc-CCCCCCcccccccccCCCch
Q 005670 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~-~~lgf~~~~~~~~~~~~~~~ 502 (684)
++|+.||++|||..+.++..+.......+.+.+.++|++||++|++.++++++..+..+ ..+||....... ..
T Consensus 145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~------~~ 218 (363)
T 3hws_A 145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAK------SD 218 (363)
T ss_dssp HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------------C
T ss_pred HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCcccccccc------cc
Confidence 79999999999888877776666655556678899999999999999999999987776 789997664332 11
Q ss_pred hhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHH
Q 005670 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La 582 (684)
......+.+.+.+.++.+++|+|+|++||+.++.|.|++.+++.+|+...++.+.++|.+.+...++.+.++++++++|+
T Consensus 219 ~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~ 298 (363)
T 3hws_A 219 KASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 298 (363)
T ss_dssp CSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred chhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHH
Confidence 23456788899999999999999999999999999999999999999987788889999888888889999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCC
Q 005670 583 KKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 583 ~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~ 634 (684)
+++|+|++|+|+|+++|++++.++++++++.. .++.+.||++.|....
T Consensus 299 ~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~----~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 299 KKAMARKTGARGLRSIVEAALLDTMYDLPSME----DVEKVVIDESVIDGQS 346 (363)
T ss_dssp HHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCC----CSEEEECHHHHTTCCS
T ss_pred HhhcCCccCchHHHHHHHHHHHHHHHhccccc----CCceeEEcHHHHhCcC
Confidence 99999999999999999999999999998764 5678999999988764
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=100.00 E-value=7.2e-37 Score=329.69 Aligned_cols=356 Identities=49% Similarity=0.819 Sum_probs=258.3
Q ss_pred CCCCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCc
Q 005670 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (684)
Q Consensus 263 ~~~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTG 342 (684)
...++++++++.|++.|+||+++|+.|..++.+|+++...+...... ...++++|. .....+..++.++||+||||||
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~p~-~~~~~~~~~~~~ill~Gp~GtG 84 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQ-DNQDSNVEL-EHLEEVELSKSNILLIGPTGSG 84 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHH-HHHHHTTCCCCCEEEECCTTSS
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccccccccc-ccccccccCCCCEEEECCCCCC
Confidence 35678999999999999999999999999999888876543200000 000000000 0000112234789999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcc
Q 005670 343 KTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (684)
Q Consensus 343 KT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~ 422 (684)
||++|+++|+.++.+|+.++|+.+.+++|+|.+....+..++....+.+..+.++||||||||++...++......+..+
T Consensus 85 KT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~ 164 (376)
T 1um8_A 85 KTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 164 (376)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred HHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccch
Confidence 99999999999999999999999987889998777778888877777777788999999999999987665555667777
Q ss_pred hHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCch
Q 005670 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (684)
Q Consensus 423 e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~ 502 (684)
+.+++.|+++||+..+.+|..+..+....+.+.++++|++||+++|+.+|++.+.+|.....+||..+....
T Consensus 165 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~-------- 236 (376)
T 1um8_A 165 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSK-------- 236 (376)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCT--------
T ss_pred HHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhc--------
Confidence 789999999999888777777776666667778999999999999999999999888877788987654311
Q ss_pred hhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHH
Q 005670 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIA 582 (684)
Q Consensus 503 ~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La 582 (684)
.....+++.+.+.++.+..|.|+|++|++.++.|+||+.+++.+|+...++.+.++|.+.+...+..+.++++++++|+
T Consensus 237 -~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 315 (376)
T 1um8_A 237 -KEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIA 315 (376)
T ss_dssp -TTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred -cchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHH
Confidence 0123455666677788888999999999999999999999999999977777888888888777888999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCC
Q 005670 583 KKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSED 634 (684)
Q Consensus 583 ~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~ 634 (684)
+++|.+++|+|+|+++|++++.+++++.+... ...+.||++++....
T Consensus 316 ~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~-----~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 316 QLALERKTGARGLRAIIEDFCLDIMFDLPKLK-----GSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGT-----TSEEEECHHHHTTSS
T ss_pred HHhcccccCcHHHHHHHHHHHHHHHhhccCCC-----CCEEEEeHHHhcCCC
Confidence 99888889999999999999999999887642 367889999987754
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=9.5e-35 Score=321.03 Aligned_cols=286 Identities=40% Similarity=0.649 Sum_probs=232.6
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005670 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (684)
.++|+++.+.|+++|+||+++|+.|..++.++|+|...... .....++.++||+||||||||
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~------------------~~~~~~~~~iLl~GppGtGKT 64 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEP------------------LRHEVTPKNILMIGPTGVGKT 64 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTT------------------TTTTCCCCCEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccc------------------cccccCCceEEEEcCCCCCHH
Confidence 47899999999999999999999999999999887432110 011233589999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhccc------------------------------------
Q 005670 345 LLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSD------------------------------------ 388 (684)
Q Consensus 345 ~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~------------------------------------ 388 (684)
++|+++|+.++.+|+.++++.+...+|+|.+.+..++.++..+.
T Consensus 65 ~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~ 144 (444)
T 1g41_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWG 144 (444)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------
T ss_pred HHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999998668999765666666654320
Q ss_pred ----------------------------------------ch--------------------------------------
Q 005670 389 ----------------------------------------YN-------------------------------------- 390 (684)
Q Consensus 389 ----------------------------------------~~-------------------------------------- 390 (684)
..
T Consensus 145 ~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~ 224 (444)
T 1g41_A 145 EVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALK 224 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHH
Confidence 00
Q ss_pred --------------------Hhhh-cCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCC
Q 005670 391 --------------------VAAA-QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (684)
Q Consensus 391 --------------------v~~a-~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~ 449 (684)
+..+ .++|||+||||++....+ +.+.|++++++|++||++|||+.+..
T Consensus 225 ~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~--------- 293 (444)
T 1g41_A 225 ALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST--------- 293 (444)
T ss_dssp -CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE---------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc---------
Confidence 0123 678999999999986532 35789999999999999999877763
Q ss_pred CCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcccccc
Q 005670 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (684)
Q Consensus 450 ~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~ 529 (684)
+ ...+|+++++|||||+|.. ..+.| ++|||++
T Consensus 294 ~--~~~~d~~~ilfI~~gaf~~-----------------------------------------~~~~d-----lipel~~ 325 (444)
T 1g41_A 294 K--HGMVKTDHILFIASGAFQV-----------------------------------------ARPSD-----LIPELQG 325 (444)
T ss_dssp T--TEEEECTTCEEEEEECCSS-----------------------------------------CCGGG-----SCHHHHT
T ss_pred c--cceecCCcEEEEecccccc-----------------------------------------CChhh-----cchHHhc
Confidence 1 1589999999999998641 01112 5699999
Q ss_pred ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHH
Q 005670 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI-----SKNTGARGLRSLLENILM 604 (684)
Q Consensus 530 R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~-----~~~~GAR~Lr~iIe~~l~ 604 (684)
||+++|.|++|+++++.+|+.++.+.+.+||.+.+...++.+.|+++|+++|++.++ ..+.|||.|+++|++++.
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 999999999999999999999888899999999999999999999999999999754 489999999999999999
Q ss_pred HHHhcCCCccCCCCccceEEecccccCC
Q 005670 605 DAMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 605 ~al~e~~~~~~~~~~i~~~~id~e~v~~ 632 (684)
+.++++++.+ ...+.||.+.|..
T Consensus 406 ~~~~~~~~~~-----~~~~~i~~~~v~~ 428 (444)
T 1g41_A 406 KISFSASDMN-----GQTVNIDAAYVAD 428 (444)
T ss_dssp HHHHHGGGCT-----TCEEEECHHHHHH
T ss_pred HHHhhccccC-----CCeEEEeHHHHHH
Confidence 9999998653 2578899887764
No 4
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.95 E-value=4.1e-27 Score=243.73 Aligned_cols=286 Identities=39% Similarity=0.653 Sum_probs=214.7
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHH
Q 005670 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (684)
Q Consensus 265 ~~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT 344 (684)
..+|.++.+.|++.|+||+++++.|..++..++.+....... .....+.++||+||||||||
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~~~~~~vll~G~~GtGKT 64 (310)
T 1ofh_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPL------------------RHEVTPKNILMIGPTGVGKT 64 (310)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHH------------------HHHCCCCCEEEECCTTSSHH
T ss_pred cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccc------------------cccCCCceEEEECCCCCCHH
Confidence 368899999999999999999999999997655432111000 00112479999999999999
Q ss_pred HHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhh-cCcEEEEecccccccccccccCCCCCcch
Q 005670 345 LLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAA-QQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 345 ~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a-~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (684)
++|+++|+.++.+++.++|+.+...+|+|.+....++.++..+.+.+..+ .++||||||+|++..... +.+.+..++
T Consensus 65 ~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~~~~~~~~~ 142 (310)
T 1ofh_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSRE 142 (310)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS--CCSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc--ccccchhHH
Confidence 99999999999999999999998668999876778888887765555543 579999999999987632 123344455
Q ss_pred HHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchh
Q 005670 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~ 503 (684)
.+++.|+++||+..+.. ..+ ..+..+++||+++++.. .
T Consensus 143 ~~~~~Ll~~le~~~~~~--------~~~---~~~~~~~~~i~~~~~~~------------------~------------- 180 (310)
T 1ofh_A 143 GVQRDLLPLVEGSTVST--------KHG---MVKTDHILFIASGAFQV------------------A------------- 180 (310)
T ss_dssp HHHHHHHHHHHCCEEEE--------TTE---EEECTTCEEEEEECCSS------------------S-------------
T ss_pred HHHHHHHHHhcCCeEec--------ccc---cccCCcEEEEEcCCccc------------------C-------------
Confidence 67999999999654331 011 35667889999876310 0
Q ss_pred hhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHH
Q 005670 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~ 583 (684)
. ...+.|+|++||+.++.|++++.+++.+|+++....+.++|.+.+...+..+.++++++++|++
T Consensus 181 ----------~-----~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 245 (310)
T 1ofh_A 181 ----------R-----PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 245 (310)
T ss_dssp ----------C-----GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHH
T ss_pred ----------C-----cccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHH
Confidence 0 0136789999999889999999999999999755557777777777778788999999999999
Q ss_pred hcCC-----CCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCC
Q 005670 584 KAIS-----KNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGS 632 (684)
Q Consensus 584 ~a~~-----~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~ 632 (684)
++|. +.+++|.|++++++++..+..+...... ..+.|+.+++..
T Consensus 246 ~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~-----~~~~i~~~~v~~ 294 (310)
T 1ofh_A 246 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNG-----QTVNIDAAYVAD 294 (310)
T ss_dssp HHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTT-----CEEEECHHHHHH
T ss_pred HhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccC-----CEEEEeeHHHHH
Confidence 8654 3688999999999999887766553321 345566665543
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.95 E-value=3e-27 Score=276.78 Aligned_cols=273 Identities=21% Similarity=0.307 Sum_probs=198.9
Q ss_pred CCCCCCCCCCCCCh----HHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCccccccc
Q 005670 255 CWGGSNLGNKFPTP----KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (684)
Q Consensus 255 ~~~g~pl~~~~~~~----~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 330 (684)
.|+++|........ ..+++.|.+.|+||+++++.|..++... ..|...+++| .
T Consensus 432 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~------------~~g~~~~~~p-----------~ 488 (758)
T 1r6b_X 432 RIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA------------RAGLGHEHKP-----------V 488 (758)
T ss_dssp HHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH------------HTTCSCTTSC-----------S
T ss_pred HhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH------------hcccCCCCCC-----------c
Confidence 36777765544333 3478889999999999999999888521 1222222222 3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccc-----------cccccchhHHHHHHHHhcccchHhhhcCcEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------ARYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~-----------s~yvG~~~~~~l~~l~~~a~~~v~~a~~gIL 399 (684)
.++||+||||||||++|+++|+.++.+|+.++|+++.+ ++|+|++....+...+.. ++++||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-------~~~~vl 561 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-------HPHAVL 561 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH-------CSSEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh-------CCCcEE
Confidence 68999999999999999999999999999999998763 357776655555555444 356899
Q ss_pred EEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhc
Q 005670 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (684)
Q Consensus 400 fIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r 479 (684)
|||||+++++. +++.|+++||+..+. +..| ..+|++|++||+|+|... +.++
T Consensus 562 ~lDEi~~~~~~--------------~~~~Ll~~le~~~~~--------~~~g--~~~~~~~~~iI~tsN~~~-~~~~--- 613 (758)
T 1r6b_X 562 LLDEIEKAHPD--------------VFNILLQVMDNGTLT--------DNNG--RKADFRNVVLVMTTNAGV-RETE--- 613 (758)
T ss_dssp EEETGGGSCHH--------------HHHHHHHHHHHSEEE--------ETTT--EEEECTTEEEEEEECSSC-C------
T ss_pred EEeCccccCHH--------------HHHHHHHHhcCcEEE--------cCCC--CEEecCCeEEEEecCcch-hhhh---
Confidence 99999999887 999999999833222 2233 478999999999998532 1111
Q ss_pred cccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHH
Q 005670 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (684)
Q Consensus 480 ~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq 559 (684)
+..+||...... . ...+.++..|+|+|++||+.+|.|++++++++.+|+...+..+
T Consensus 614 --~~~~g~~~~~~~-------------~------~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~--- 669 (758)
T 1r6b_X 614 --RKSIGLIHQDNS-------------T------DAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL--- 669 (758)
T ss_dssp -----------------------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH---
T ss_pred --hcccCccccchH-------------H------HHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHH---
Confidence 123455321100 0 0123345578999999999999999999999999999865554
Q ss_pred HHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 005670 560 YRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 560 ~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
...+...++.+.++++++++|++++|+.++|+|+|+++|++.+.+.+.+.
T Consensus 670 -~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~ 719 (758)
T 1r6b_X 670 -QVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_dssp -HHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred -HHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 44455567788999999999999999999999999999999999877654
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.94 E-value=6.6e-26 Score=235.79 Aligned_cols=261 Identities=25% Similarity=0.348 Sum_probs=184.7
Q ss_pred HHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005670 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAr 348 (684)
.++++.|.+.++||+.+++.|...+..... +...+.+ +..++||+||||||||++|+
T Consensus 9 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~------------~~~~~~~-----------~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 9 LRLEEELHKRVVGQDEAIRAVADAIRRARA------------GLKDPNR-----------PIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp HTHHHHHHTTCCSCHHHHHHHHHHHHHHHH------------TCSCTTS-----------CSEEEEEESCSSSSHHHHHH
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhc------------CCCCCCC-----------CceEEEEECCCCcCHHHHHH
Confidence 358889999999999999999999863321 1111222 23689999999999999999
Q ss_pred HHHHHh---CCCEEEEecccccc-----------cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccc
Q 005670 349 TLARYV---NVPFVIADATTLTQ-----------ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (684)
Q Consensus 349 aLA~~l---~~pfv~i~~s~l~~-----------s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~ 414 (684)
++|+.+ +.+++.++|+.+.. .+++|......+...+. .+.++||||||+|++.+.
T Consensus 66 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~~~vl~lDEi~~l~~~---- 134 (311)
T 4fcw_A 66 TLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR-------RRPYSVILFDAIEKAHPD---- 134 (311)
T ss_dssp HHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHH-------HCSSEEEEEETGGGSCHH----
T ss_pred HHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHH-------hCCCeEEEEeChhhcCHH----
Confidence 999998 45799999987652 12333332123333333 234589999999999876
Q ss_pred cCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccc
Q 005670 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (684)
Q Consensus 415 ~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~ 494 (684)
+++.|+++|++..+. ...+ ..+++++++||+|+|... + .+......
T Consensus 135 ----------~~~~Ll~~le~~~~~--------~~~~--~~~~~~~~iiI~ttn~~~-~-~i~~~~~~------------ 180 (311)
T 4fcw_A 135 ----------VFNILLQMLDDGRLT--------DSHG--RTVDFRNTVIIMTSNLGS-P-LILEGLQK------------ 180 (311)
T ss_dssp ----------HHHHHHHHHHHSEEE--------CTTS--CEEECTTEEEEEEESTTH-H-HHHTTTTS------------
T ss_pred ----------HHHHHHHHHhcCEEE--------cCCC--CEEECCCcEEEEecccCH-H-HHHhhhcc------------
Confidence 999999999843332 2222 378999999999998531 1 11110000
Q ss_pred cccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc
Q 005670 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT 574 (684)
Q Consensus 495 ~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s 574 (684)
....+ .+.+.+. +.+...|.|+|++||+.++.|.|++.+++.+|++..+..+.++ +...+..+.++
T Consensus 181 ----~~~~~----~l~~~~~--~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~----~~~~~~~~~~~ 246 (311)
T 4fcw_A 181 ----GWPYE----RIRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRAR----LAEKRISLELT 246 (311)
T ss_dssp ----CCCSS----THHHHTH--HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHH----HHTTTCEEEEC
T ss_pred ----cccHH----HHHHHHH--HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHH----HHhCCcEEEeC
Confidence 00001 1111111 2234568999999999999999999999999998865555443 44456788999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 575 ENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 575 ~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
++++++|++++|++++|+|+|+++|++++..++.+..
T Consensus 247 ~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 247 EAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999998876553
No 7
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.94 E-value=2.4e-26 Score=269.55 Aligned_cols=258 Identities=21% Similarity=0.331 Sum_probs=183.6
Q ss_pred CCCCCCCCCCCC----ChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCccccccc
Q 005670 255 CWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (684)
Q Consensus 255 ~~~g~pl~~~~~----~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 330 (684)
.|+++|...... ....+++.|.+.|+||+++++.|..++... ..+...+.+| .
T Consensus 465 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~------------~~~~~~~~~p-----------~ 521 (758)
T 3pxi_A 465 SWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA------------RAGLKDPKRP-----------I 521 (758)
T ss_dssp TTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH------------TTTCSCTTSC-----------S
T ss_pred HHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH------------HcccCCCCCC-----------c
Confidence 477776654322 223478889999999999999999998622 1122222222 3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
.++||+||||||||++|+++|+.+ +.+|+.+||+++.+ .+... ...+...+.. .+++|||||||+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~-~~~~~--~~~l~~~~~~-------~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME-KHSTS--GGQLTEKVRR-------KPYSVVLLDAIEKA 591 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS-SCCCC-----CHHHHHH-------CSSSEEEEECGGGS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc-ccccc--cchhhHHHHh-------CCCeEEEEeCcccc
Confidence 589999999999999999999998 67899999999884 33322 2223333333 35689999999999
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
++. +++.|+++||+. ...+..|+ .+++.+++||+|+|...-
T Consensus 592 ~~~--------------~~~~Ll~~le~g--------~~~~~~g~--~~~~~~~~iI~ttn~~~~--------------- 632 (758)
T 3pxi_A 592 HPD--------------VFNILLQVLEDG--------RLTDSKGR--TVDFRNTILIMTSNVGAS--------------- 632 (758)
T ss_dssp CHH--------------HHHHHHHHHHHS--------BCC-------CCBCTTCEEEEEESSSTT---------------
T ss_pred CHH--------------HHHHHHHHhccC--------eEEcCCCC--EeccCCeEEEEeCCCChh---------------
Confidence 887 999999999832 22233333 578899999999984310
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhc
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~ 567 (684)
....+ .+.++..|+|+|++||+.+|.|+||+++++.+|+...+..+.++ +...
T Consensus 633 -----------------~~~~~------~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~----~~~~ 685 (758)
T 3pxi_A 633 -----------------EKDKV------MGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKR----LKEQ 685 (758)
T ss_dssp -----------------CCHHH------HHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHH----HHTT
T ss_pred -----------------hHHHH------HHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHH----HHhC
Confidence 00001 12334568999999999999999999999999999866555444 4445
Q ss_pred CccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 568 gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
++.+.++++++++|++.+|+|++|+|+|+++|++.+.+.+++..
T Consensus 686 ~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 686 DLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp TCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred CCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999887654
No 8
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.93 E-value=4e-26 Score=271.14 Aligned_cols=274 Identities=23% Similarity=0.347 Sum_probs=192.2
Q ss_pred CCCCCCCCCCCCChH----HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCccccccc
Q 005670 255 CWGGSNLGNKFPTPK----EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (684)
Q Consensus 255 ~~~g~pl~~~~~~~~----el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 330 (684)
.|+++|+........ .+++.|.+.|+||+++++.|..++... .++..++++| .
T Consensus 532 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~------------~~g~~~~~~p-----------~ 588 (854)
T 1qvr_A 532 RWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA------------RAGLKDPNRP-----------I 588 (854)
T ss_dssp TTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH------------GGGCSCSSSC-----------S
T ss_pred HHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH------------hcccCCCCCC-----------c
Confidence 477776554433333 256777788999999999999998521 1222223332 3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc-----------cccccchhHHHHHHHHhcccchHhhhcC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------ARYVGEDVESILYKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~-----------s~yvG~~~~~~l~~l~~~a~~~v~~a~~ 396 (684)
.++||+||||||||++|+++|+.+ +.+|+.++|+++.+ ++|+|++....+...+... .+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~-------~~ 661 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR-------PY 661 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHC-------SS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhC-------CC
Confidence 689999999999999999999999 67999999998763 3466666434444444433 45
Q ss_pred cEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHH
Q 005670 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 397 gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i 476 (684)
+|||||||+++++. +++.|+++||... ..+..+ ..+|++|++||+|+|... +.+.
T Consensus 662 ~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~--------~~~~~g--~~vd~~~~iiI~tsn~~~-~~~~ 716 (854)
T 1qvr_A 662 SVILFDEIEKAHPD--------------VFNILLQILDDGR--------LTDSHG--RTVDFRNTVIILTSNLGS-PLIL 716 (854)
T ss_dssp EEEEESSGGGSCHH--------------HHHHHHHHHTTTE--------ECCSSS--CCEECTTEEEEEECCTTH-HHHH
T ss_pred eEEEEecccccCHH--------------HHHHHHHHhccCc--------eECCCC--CEeccCCeEEEEecCcCh-HHHh
Confidence 89999999999887 9999999998332 233333 378999999999998531 1111
Q ss_pred HhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHH
Q 005670 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (684)
Q Consensus 477 ~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L 556 (684)
... +++ ...+ .+.+.+. +.++..|+|+|++||+.++.|.|++.+++..|+...+..+
T Consensus 717 ~~~------~~~-----------~~~~----~l~~~v~--~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 717 EGL------QKG-----------WPYE----RIRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp HHH------HTT-----------CCHH----HHHHHHH--HHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred hhc------ccc-----------cchH----HHHHHHH--HHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 100 000 0011 1111111 1245679999999999999999999999999999866555
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 005670 557 GKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 557 ~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
.++ +...++.+.++++++++|++++|++++|+|+|+++|++.+.+.+.+.
T Consensus 774 ~~~----~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 774 RAR----LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp HHH----HHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred HHH----HHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 444 44456778999999999999999999999999999999999887765
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.2e-24 Score=234.00 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=170.8
Q ss_pred ccccChHHHHHHHHHHHHhhhhhH--hhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRI--YNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+.|.|++++|+.|.++|..+.++. +..... .+|+++||+||||||||++|+++|.++
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---------------------~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGI---------------------AQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---------------------CCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---------------------CCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 458999999999999998765532 222211 124899999999999999999999999
Q ss_pred CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 355 NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+|+.++++++. ++|+|+. +..++.+|..+.. ..+|||||||||.+.+.|...+.+.+.....+.+.||..||
T Consensus 207 ~~~f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~----~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 207 DCKFIRVSGAELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp TCEEEEEEGGGGS-CSSTTHH-HHHHHHHHHHHHH----TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred CCCceEEEhHHhh-ccccchH-HHHHHHHHHHHHH----hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 9999999999998 7999998 8899999988753 58999999999999988766555555555667888999998
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
|.. ...++++|+|+|..+
T Consensus 281 g~~-------------------~~~~V~vIaATNrpd------------------------------------------- 298 (405)
T 4b4t_J 281 GFE-------------------TSKNIKIIMATNRLD------------------------------------------- 298 (405)
T ss_dssp TTT-------------------CCCCEEEEEEESCSS-------------------------------------------
T ss_pred ccC-------------------CCCCeEEEeccCChh-------------------------------------------
Confidence 521 123588999998543
Q ss_pred chhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH-HHHHHHHhcCCCCCC
Q 005670 515 SSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTG 591 (684)
Q Consensus 515 ~~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e-Al~~La~~a~~~~~G 591 (684)
.+.|+|++ |||..|.++.++.++..+|++.++ .+ +.++++ .++.|++. ..++.
T Consensus 299 -------~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~-------------~~--~~l~~dvdl~~lA~~--t~G~S 354 (405)
T 4b4t_J 299 -------ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS-------------RK--MNLTRGINLRKVAEK--MNGCS 354 (405)
T ss_dssp -------SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-------------TT--SBCCSSCCHHHHHHH--CCSCC
T ss_pred -------hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh-------------cC--CCCCccCCHHHHHHH--CCCCC
Confidence 24566765 999999999999999999986521 11 222222 36788885 56788
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 005670 592 ARGLRSLLENILMDAMYE 609 (684)
Q Consensus 592 AR~Lr~iIe~~l~~al~e 609 (684)
+.+|++++..+...++.+
T Consensus 355 GADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 355 GADVKGVCTEAGMYALRE 372 (405)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 899999999988877654
No 10
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.3e-23 Score=228.37 Aligned_cols=219 Identities=21% Similarity=0.305 Sum_probs=169.6
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|.|++++|+.|.+.|..+.++ .+..... .+|.++||+||||||||++|+++|.+++
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---------------------~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGI---------------------KPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---------------------CCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---------------------CCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 5899999999999999865543 2322221 1248999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++++++. ++|+|+. +..++.+|..+.. ..+|||||||||.+...|...+.+.+.....+.+.||..|||
T Consensus 242 ~~fi~v~~s~l~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 242 ATFLRIVGSELI-QKYLGDG-PRLCRQIFKVAGE----NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp CEEEEEESGGGC-CSSSSHH-HHHHHHHHHHHHH----TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEHHHhh-hccCchH-HHHHHHHHHHHHh----cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 999999999999 7999988 8899999987653 578999999999999988765555555555677788888884
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ...++++|+|+|..+
T Consensus 316 ~~-------------------~~~~ViVIaATNrpd-------------------------------------------- 332 (437)
T 4b4t_I 316 FD-------------------DRGDVKVIMATNKIE-------------------------------------------- 332 (437)
T ss_dssp CC-------------------CSSSEEEEEEESCST--------------------------------------------
T ss_pred cC-------------------CCCCEEEEEeCCChh--------------------------------------------
Confidence 21 123589999998443
Q ss_pred hhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH-HHHHHHHhcCCCCCCH
Q 005670 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGA 592 (684)
Q Consensus 516 ~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e-Al~~La~~a~~~~~GA 592 (684)
.+.|+|+. |||..|.|+.++.++..+|++.++. .+.++++ .++.|++. +.++.+
T Consensus 333 ------~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~---------------~~~l~~dvdl~~LA~~--T~GfSG 389 (437)
T 4b4t_I 333 ------TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS---------------KMNLSEDVNLETLVTT--KDDLSG 389 (437)
T ss_dssp ------TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT---------------TSCBCSCCCHHHHHHH--CCSCCH
T ss_pred ------hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc---------------CCCCCCcCCHHHHHHh--CCCCCH
Confidence 25577775 9999999999999999999865211 1222222 26778885 567888
Q ss_pred HHHHHHHHHHHHHHHhc
Q 005670 593 RGLRSLLENILMDAMYE 609 (684)
Q Consensus 593 R~Lr~iIe~~l~~al~e 609 (684)
++|++++..+...++.+
T Consensus 390 ADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 390 ADIQAMCTEAGLLALRE 406 (437)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999988877654
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.5e-23 Score=228.31 Aligned_cols=220 Identities=22% Similarity=0.286 Sum_probs=168.0
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|.|.+++|+.|.+.|..+.++ .+..... .+|+++|||||||||||++|+++|..++
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---------------------~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGI---------------------RAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---------------------CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---------------------CCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 5899999999999999766553 2222211 1248999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++++++. ++|+|+. +..++.+|..+.. ..+|||||||||.+...|...+.+.+.....+.+.||..|+|
T Consensus 241 ~~f~~v~~s~l~-~~~vGes-e~~ir~lF~~A~~----~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 241 ATFLKLAAPQLV-QMYIGEG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp CEEEEEEGGGGC-SSCSSHH-HHHHHHHHHHHHH----HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred CCEEEEehhhhh-hcccchH-HHHHHHHHHHHHh----cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 999999999998 7999988 7899999987653 589999999999999887655444444444567788899985
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ...++++|+|+|..+
T Consensus 315 ~~-------------------~~~~ViVIaaTNrp~-------------------------------------------- 331 (434)
T 4b4t_M 315 FS-------------------SDDRVKVLAATNRVD-------------------------------------------- 331 (434)
T ss_dssp SC-------------------SSCSSEEEEECSSCC--------------------------------------------
T ss_pred cC-------------------CCCCEEEEEeCCCch--------------------------------------------
Confidence 21 113588899998443
Q ss_pred hhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
.+.|+|+. |||..|.|+.++.++..+|++.++..+ ...-.++ ++.|++. +.++.++
T Consensus 332 ------~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-----------~~~~dvd---l~~lA~~--t~G~sGA 389 (434)
T 4b4t_M 332 ------VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM-----------TTDDDIN---WQELARS--TDEFNGA 389 (434)
T ss_dssp ------CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS-----------CBCSCCC---HHHHHHH--CSSCCHH
T ss_pred ------hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC-----------CCCCcCC---HHHHHHh--CCCCCHH
Confidence 25677865 999999999999999999987532111 1111222 5777885 5677889
Q ss_pred HHHHHHHHHHHHHHhc
Q 005670 594 GLRSLLENILMDAMYE 609 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e 609 (684)
+|++++..+...++.+
T Consensus 390 Di~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRN 405 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999888777654
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.6e-23 Score=225.79 Aligned_cols=220 Identities=21% Similarity=0.273 Sum_probs=168.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhH--hhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRI--YNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|.|++++|+.|.++|..+.++. +..... .+|+++|||||||||||++|+++|..++
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---------------------~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGI---------------------KPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---------------------CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---------------------CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 58999999999999998765532 222211 1358999999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++++++. ++|+|+. +..++.+|..+.. ..+|||||||||.+...|...+.+.+.....+.+.||..|||
T Consensus 241 ~~~~~v~~s~l~-sk~~Ges-e~~ir~~F~~A~~----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 241 ANFIFSPASGIV-DKYIGES-ARIIREMFAYAKE----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp CEEEEEEGGGTC-CSSSSHH-HHHHHHHHHHHHH----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred CCEEEEehhhhc-cccchHH-HHHHHHHHHHHHh----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 999999999998 7999988 7889999987653 589999999999999887665555555555678889999985
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ...++++|+|+|..+
T Consensus 315 ~~-------------------~~~~vivI~ATNrp~-------------------------------------------- 331 (437)
T 4b4t_L 315 FD-------------------NLGQTKIIMATNRPD-------------------------------------------- 331 (437)
T ss_dssp SS-------------------CTTSSEEEEEESSTT--------------------------------------------
T ss_pred cc-------------------CCCCeEEEEecCCch--------------------------------------------
Confidence 21 123588999988442
Q ss_pred hhhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
.+.|+|+ +|||..|.|+.++.++..+|++.++.. ....-.+ .++.|++. +.++.++
T Consensus 332 ------~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-----------~~~~~d~---dl~~lA~~--t~G~sGA 389 (437)
T 4b4t_L 332 ------TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK-----------VKKTGEF---DFEAAVKM--SDGFNGA 389 (437)
T ss_dssp ------SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-----------SCBCSCC---CHHHHHHT--CCSCCHH
T ss_pred ------hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-----------CCCCccc---CHHHHHHh--CCCCCHH
Confidence 2456665 569999999999999999998753211 1111122 26777874 6778889
Q ss_pred HHHHHHHHHHHHHHhc
Q 005670 594 GLRSLLENILMDAMYE 609 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e 609 (684)
.|++++..+...++.+
T Consensus 390 Di~~l~~eA~~~air~ 405 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRD 405 (437)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999888777654
No 13
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.9e-23 Score=226.44 Aligned_cols=221 Identities=20% Similarity=0.240 Sum_probs=167.6
Q ss_pred ccccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+.|.|++++|+.|.+.|..+.++ .+..... .+|+++||+||||||||++|+++|.++
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---------------------~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGI---------------------DPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---------------------CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---------------------CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 35899999999999999765443 2222111 135899999999999999999999999
Q ss_pred CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 355 NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+|+.++++++. +.|+|+. ++.++.+|..+.. ..+|||||||+|.+...|+..+.+.+.....+.+.||..|+
T Consensus 268 ~~~fi~vs~s~L~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 268 DATFIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp TCEEEEEEGGGGC-CCSSSHH-HHHHHHHHHHHHH----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred CCCeEEEEhHHhh-cccCCHH-HHHHHHHHHHHHh----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 9999999999999 7999998 7889999987653 58999999999999988766554444444557777888888
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
|.. ...++++|+|+|..+
T Consensus 342 g~~-------------------~~~~ViVIaATNrpd------------------------------------------- 359 (467)
T 4b4t_H 342 GFD-------------------PRGNIKVMFATNRPN------------------------------------------- 359 (467)
T ss_dssp SSC-------------------CTTTEEEEEECSCTT-------------------------------------------
T ss_pred ccC-------------------CCCcEEEEeCCCCcc-------------------------------------------
Confidence 421 123588999998432
Q ss_pred chhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCH
Q 005670 515 SSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 515 ~~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GA 592 (684)
.+.|+|++ |||..|.|+.++.++..+|++.++.. ..+.-.++ ++.|++. +.++.+
T Consensus 360 -------~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-----------~~l~~dvd---l~~LA~~--T~GfSG 416 (467)
T 4b4t_H 360 -------TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-----------MSVERGIR---WELISRL--CPNSTG 416 (467)
T ss_dssp -------SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-----------SCBCSSCC---HHHHHHH--CCSCCH
T ss_pred -------cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-----------CCCCCCCC---HHHHHHH--CCCCCH
Confidence 24466665 99999999999999999998652111 11111222 5677875 567788
Q ss_pred HHHHHHHHHHHHHHHhc
Q 005670 593 RGLRSLLENILMDAMYE 609 (684)
Q Consensus 593 R~Lr~iIe~~l~~al~e 609 (684)
++|++++..+...++.+
T Consensus 417 ADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 417 AELRSVCTEAGMFAIRA 433 (467)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999888777654
No 14
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-22 Score=223.51 Aligned_cols=220 Identities=19% Similarity=0.310 Sum_probs=168.2
Q ss_pred ccccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+.|.|++++|+.|.+.|..+.++ .+..... .+|+++||+||||||||++|+++|..+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---------------------~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGI---------------------DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---------------------CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---------------------CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999765543 2222211 124899999999999999999999999
Q ss_pred CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 355 NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+|+.++++++. +.|+|.. +..++.+|..+.. ..+|||||||+|.+...|.....+.+....++.+.||..|+
T Consensus 231 ~~~~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A~~----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld 304 (428)
T 4b4t_K 231 KAAFIRVNGSEFV-HKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD 304 (428)
T ss_dssp TCEEEEEEGGGTC-CSSCSHH-HHHHHHHHHHHHH----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEecchhh-ccccchh-HHHHHHHHHHHHH----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhh
Confidence 9999999999998 7999988 7889999987653 57899999999999988766555555555668899999998
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
|.. ...++++|+|+|..+
T Consensus 305 g~~-------------------~~~~v~vI~aTN~~~------------------------------------------- 322 (428)
T 4b4t_K 305 GFD-------------------QSTNVKVIMATNRAD------------------------------------------- 322 (428)
T ss_dssp HSC-------------------SSCSEEEEEEESCSS-------------------------------------------
T ss_pred CCC-------------------CCCCEEEEEecCChh-------------------------------------------
Confidence 521 123588999998443
Q ss_pred chhhhhhcCcccccc--ccceEEEcc-ccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH-HHHHHHHhcCCCCC
Q 005670 515 SSDLIAYGLIPEFVG--RFPVLVSLL-ALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNT 590 (684)
Q Consensus 515 ~~dll~~~f~PeLl~--R~d~iI~f~-pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e-Al~~La~~a~~~~~ 590 (684)
.+.|+|++ |||..|.|+ .++.++...|++.++. .+.++++ .++.|+.. +.++
T Consensus 323 -------~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~---------------~~~l~~~~dl~~lA~~--t~G~ 378 (428)
T 4b4t_K 323 -------TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS---------------KMSLAPEADLDSLIIR--NDSL 378 (428)
T ss_dssp -------SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH---------------SSCBCTTCCHHHHHHH--TTTC
T ss_pred -------hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc---------------CCCCCcccCHHHHHHH--CCCC
Confidence 24566664 999999997 5788888888865211 1222222 36778885 5677
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 005670 591 GARGLRSLLENILMDAMYE 609 (684)
Q Consensus 591 GAR~Lr~iIe~~l~~al~e 609 (684)
.++.|++++..+...++.+
T Consensus 379 sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 379 SGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHC
Confidence 8899999999988777654
No 15
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=8.4e-22 Score=204.92 Aligned_cols=235 Identities=19% Similarity=0.264 Sum_probs=168.9
Q ss_pred ChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHH
Q 005670 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (684)
Q Consensus 267 ~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~L 346 (684)
...++.+.|++.|+|++++|+.|.+.+........ .. ..|.... .+..++||+||||||||++
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~---~~--~~g~~~~------------~~~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERA---RQ--KLGLAHE------------TPTLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH---HH--HHTCCSS------------CCCCEEEEEECTTSSHHHH
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHH---HH--HcCCCCC------------CCCceEEEECCCCCCHHHH
Confidence 45568888998899999999999988864321100 00 1111111 1236899999999999999
Q ss_pred HHHHHHHhC-------CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCC
Q 005670 347 AKTLARYVN-------VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (684)
Q Consensus 347 AraLA~~l~-------~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d 419 (684)
|+++|+.++ .+++.++++++. ..++|.. ...+..++.. +.++||||||+|.+...+.. +
T Consensus 84 a~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~-----~ 149 (309)
T 3syl_A 84 ALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEVLKR-------AMGGVLFIDEAYYLYRPDNE-----R 149 (309)
T ss_dssp HHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH-HHHHHHHHHH-------HTTSEEEEETGGGSCCCC--------
T ss_pred HHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc-HHHHHHHHHh-------cCCCEEEEEChhhhccCCCc-----c
Confidence 999999983 489999999987 6788876 4455665554 35689999999999754221 2
Q ss_pred CcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCC
Q 005670 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGG 499 (684)
Q Consensus 420 ~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~ 499 (684)
.....+++.|+++|+.. ..++++|+++|...++...
T Consensus 150 ~~~~~~~~~Ll~~l~~~---------------------~~~~~~i~~~~~~~~~~~~----------------------- 185 (309)
T 3syl_A 150 DYGQEAIEILLQVMENN---------------------RDDLVVILAGYADRMENFF----------------------- 185 (309)
T ss_dssp CCTHHHHHHHHHHHHHC---------------------TTTCEEEEEECHHHHHHHH-----------------------
T ss_pred cccHHHHHHHHHHHhcC---------------------CCCEEEEEeCChHHHHHHH-----------------------
Confidence 23455899999999821 1357888888732211110
Q ss_pred CchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHH
Q 005670 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALR 579 (684)
Q Consensus 500 ~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~ 579 (684)
.+.|+|++|++.++.|++++.+++.+|++..+.. ..+.+++++++
T Consensus 186 ----------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~-------------~~~~~~~~~~~ 230 (309)
T 3syl_A 186 ----------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD-------------QNYQMTPEAET 230 (309)
T ss_dssp ----------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH-------------TTCEECHHHHH
T ss_pred ----------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH-------------cCCCCCHHHHH
Confidence 1348899999999999999999999998763322 14679999999
Q ss_pred HHHHhcC-----CCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 580 LIAKKAI-----SKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 580 ~La~~a~-----~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
.++++.. .|.+++|.|++++++++..+..++.
T Consensus 231 ~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 231 ALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9998632 6777799999999999987765543
No 16
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.87 E-value=1.2e-22 Score=214.22 Aligned_cols=272 Identities=17% Similarity=0.247 Sum_probs=174.4
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (684)
+.++|++.+++.+...+.... ....++||+||||||||++|+++++.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a------------------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA------------------------------PSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC------------------------------STTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCcEECCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 347999999999888875110 012789999999999999999999977
Q ss_pred -CCCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHH
Q 005670 355 -NVPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 355 -~~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+.||+.++|+.+.+ +.++|+..+. +........+.++.+.+++||||||+.++.. +|..|
T Consensus 52 ~~~~~v~v~~~~~~~~l~~~~lfg~~~g~-~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~L 116 (304)
T 1ojl_A 52 SDRPLVTLNCAALNESLLESELFGHEKGA-FTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRL 116 (304)
T ss_dssp SSSCCCEEECSSCCHHHHHHHHTCCCSSC-CC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHH
T ss_pred cCCCeEEEeCCCCChHHHHHHhcCccccc-cCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHH
Confidence 56899999998752 2233332111 1111112334566677899999999999876 89999
Q ss_pred HHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHH
Q 005670 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~L 509 (684)
+++|+...+. ..|. .. ....++.+|+++|. ++++.+..+
T Consensus 117 l~~l~~~~~~--~~g~-----~~---~~~~~~riI~atn~-~l~~~v~~g------------------------------ 155 (304)
T 1ojl_A 117 LRAIQEREVQ--RVGS-----NQ---TISVDVRLIAATHR-DLAEEVSAG------------------------------ 155 (304)
T ss_dssp HHHHHSSBCC--BTTB-----CC---CCBCCCEEEEEESS-CHHHHHHHT------------------------------
T ss_pred HHHHhcCEee--ecCC-----cc---cccCCeEEEEecCc-cHHHHHHhC------------------------------
Confidence 9999843321 0111 11 11235778888873 344444322
Q ss_pred HhhccchhhhhhcCccccccccceE-EEccccC--HHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcC
Q 005670 510 METVESSDLIAYGLIPEFVGRFPVL-VSLLALT--ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 510 l~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLs--eeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~ 586 (684)
.|+++|++||..+ |.++|+. .+|+..++...+..+..++. .....+++++++.|.. |
T Consensus 156 ------------~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~------~~~~~~s~~a~~~L~~--~ 215 (304)
T 1ojl_A 156 ------------RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNR------KVVKGFTPQAMDLLIH--Y 215 (304)
T ss_dssp ------------SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTT------CCCCCBCHHHHHHHHH--C
T ss_pred ------------CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhc------cCccCCCHHHHHHHHc--C
Confidence 4778899999654 8899999 58888888765444332221 1135799999999999 6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccceEEecccccCCCCCCCcceEEcCcchHHH-HHHHHHHhhhhhccc
Q 005670 587 SKNTGARGLRSLLENILMDAMYEIPDVRAGDEVIDAVVVDEEAVGSEDRGCGAKILYGKGALDR-YLAQHKRKDLETNVA 665 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~~~~id~e~v~~~~~~~~~~i~~~~g~l~~-~l~~~~~~~~~~~~~ 665 (684)
.|++++|+|+++|++++..+-.. .|+.+++.......... ....+.. .+++.|++.|...++
T Consensus 216 ~wpGnvReL~~~l~~~~~~~~~~--------------~i~~~~l~~~~~~~~~~---~~~~l~~~~~~~~e~~~i~~~l~ 278 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLLTGE--------------YISERELPLAIAATPIK---TEYSGEIQPLVDVEKEVILAALE 278 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHCCSS--------------SBCGGGSCGGGC----------CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC--------------cccHHhhhhhhccCCCc---cCCCcchhhHHHHHHHHHHHHHH
Confidence 78999999999999987633110 12222221110000000 0011122 467788999999999
Q ss_pred cCCCCC
Q 005670 666 GADGEP 671 (684)
Q Consensus 666 ~~~~~~ 671 (684)
.++|+.
T Consensus 279 ~~~gn~ 284 (304)
T 1ojl_A 279 KTGGNK 284 (304)
T ss_dssp TTTTCH
T ss_pred HcCCCH
Confidence 888875
No 17
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.87 E-value=1.2e-21 Score=222.11 Aligned_cols=243 Identities=20% Similarity=0.256 Sum_probs=164.0
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHH
Q 005670 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (684)
Q Consensus 266 ~~~~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~ 345 (684)
.+..++.+.|++.++|++++++.+.+.+...... ...+..+++|+||||||||+
T Consensus 70 ~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~--------------------------~~~~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 70 LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLT--------------------------KSLKGPILCLAGPPGVGKTS 123 (543)
T ss_dssp CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHS--------------------------SSCCSCEEEEESSSSSSHHH
T ss_pred ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc--------------------------ccCCCCEEEEECCCCCCHHH
Confidence 3345567788889999999999998766422110 00123689999999999999
Q ss_pred HHHHHHHHhCCCEEEEecccccc--------cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCC
Q 005670 346 LAKTLARYVNVPFVIADATTLTQ--------ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (684)
Q Consensus 346 LAraLA~~l~~pfv~i~~s~l~~--------s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~ 417 (684)
+|+++|+.++.+|+.+++..+.. ..|+|.. .+.+...+..+. ..++||||||||++...+.
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~----- 192 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFR----- 192 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC---------------------CHHHHHHTTC-----SSSEEEEEEESSSCC---------
T ss_pred HHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhc-----
Confidence 99999999999999999887542 2455554 233444444432 2456999999999987521
Q ss_pred CCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccccccc
Q 005670 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (684)
Q Consensus 418 ~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~ 497 (684)
...++.||++||+.. ...+...+....++..+++||+|+|..+
T Consensus 193 -----~~~~~~LL~~ld~~~------~~~~~~~~~~~~~~~~~v~iI~ttN~~~-------------------------- 235 (543)
T 3m6a_A 193 -----GDPSSAMLEVLDPEQ------NSSFSDHYIEETFDLSKVLFIATANNLA-------------------------- 235 (543)
T ss_dssp ----------CCGGGTCTTT------TTBCCCSSSCCCCBCSSCEEEEECSSTT--------------------------
T ss_pred -----cCHHHHHHHHHhhhh------cceeecccCCeeecccceEEEeccCccc--------------------------
Confidence 116788999998321 1122233333467788999999988321
Q ss_pred CCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHH
Q 005670 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA 577 (684)
Q Consensus 498 ~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eA 577 (684)
.++|+|++|++ +|.|++++.+++.+|+..++ .+++.+........+.+++++
T Consensus 236 ------------------------~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l---~~~~~~~~~~~~~~i~i~~~~ 287 (543)
T 3m6a_A 236 ------------------------TIPGPLRDRME-IINIAGYTEIEKLEIVKDHL---LPKQIKEHGLKKSNLQLRDQA 287 (543)
T ss_dssp ------------------------TSCHHHHHHEE-EEECCCCCHHHHHHHHHHTH---HHHHHHHTTCCGGGCEECHHH
T ss_pred ------------------------cCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHH---HHHHHHHcCCCcccccCCHHH
Confidence 36789999996 78999999999999998754 333322221112267899999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 005670 578 LRLIAKKAISKNTGARGLRSLLENILMDAMYEIP 611 (684)
Q Consensus 578 l~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~ 611 (684)
++.|++. |+|+.|+|+|++.|++++..+..++.
T Consensus 288 l~~l~~~-~~~~~~vR~L~~~i~~~~~~aa~~~~ 320 (543)
T 3m6a_A 288 ILDIIRY-YTREAGVRSLERQLAAICRKAAKAIV 320 (543)
T ss_dssp HHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CChhhchhHHHHHHHHHHHHHHHHHH
Confidence 9999984 89999999999999999988766544
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=199.53 Aligned_cols=221 Identities=21% Similarity=0.299 Sum_probs=167.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-CC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-~~ 356 (684)
.|+|++++|+.|.+++..+.+...... ....++.++||+||||||||++|+++|+.+ +.
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~--------------------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 72 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFT--------------------GKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 72 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSC--------------------TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHh--------------------CCCCCCceEEEECCCCccHHHHHHHHHHHcCCC
Confidence 489999999999999976544211100 001234899999999999999999999999 88
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+.+.+... .......+++.|+..|+|.
T Consensus 73 ~~~~i~~~~l~-~~~~g~~-~~~~~~lf~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~ 143 (322)
T 1xwi_A 73 TFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGV 143 (322)
T ss_dssp EEEEEECCSSC-CSSCCSC-HHHHHHHHHHHH----HTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCS
T ss_pred cEEEEEhHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcc
Confidence 99999999988 6888887 677888887653 3478999999999998765432 1222345788899999842
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
.. +..++++|+++|..+
T Consensus 144 ~~------------------~~~~v~vI~atn~~~--------------------------------------------- 160 (322)
T 1xwi_A 144 GV------------------DNDGILVLGATNIPW--------------------------------------------- 160 (322)
T ss_dssp SS------------------CCTTEEEEEEESCTT---------------------------------------------
T ss_pred cc------------------cCCCEEEEEecCCcc---------------------------------------------
Confidence 11 124588888887321
Q ss_pred hhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHH
Q 005670 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.+++||+.++.++.++.++..+|++..+ ......+++..++.|++. ..++..+.|+
T Consensus 161 -----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-------------~~~~~~l~~~~l~~la~~--t~G~sgadl~ 220 (322)
T 1xwi_A 161 -----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL-------------GTTQNSLTEADFRELGRK--TDGYSGADIS 220 (322)
T ss_dssp -----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-------------TTCCBCCCHHHHHHHHHT--CTTCCHHHHH
T ss_pred -----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH-------------hcCCCCCCHHHHHHHHHH--cCCCCHHHHH
Confidence 14577888999999999999999999886521 122456789999999994 6778789999
Q ss_pred HHHHHHHHHHHhcC
Q 005670 597 SLLENILMDAMYEI 610 (684)
Q Consensus 597 ~iIe~~l~~al~e~ 610 (684)
.+++.++..++.+.
T Consensus 221 ~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 221 IIVRDALMQPVRKV 234 (322)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877654
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.85 E-value=8.4e-21 Score=200.68 Aligned_cols=221 Identities=21% Similarity=0.283 Sum_probs=165.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++++|+.|.+++..+........ ....++.++||+||||||||++|+++|+.++.+
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~--------------------~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFK--------------------GNRKPTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCC--------------------TTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHh--------------------cCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 489999999999999875433211000 011234799999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. +.|+|.. +..++.+|..+. ...++||||||||.+...+... .......+++.|+..|++..
T Consensus 79 ~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 79 FFSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp EEEEEHHHHH-TTTGGGH-HHHHHHHHHHHH----HTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGG
T ss_pred EEEEchHHHh-hcccchH-HHHHHHHHHHHH----hcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcccc
Confidence 9999999987 6888877 677888887654 3477999999999998765332 22234558899999998421
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
. ...++++|+++|..+
T Consensus 150 ~------------------~~~~v~vi~atn~~~---------------------------------------------- 165 (322)
T 3eie_A 150 N------------------DSQGVLVLGATNIPW---------------------------------------------- 165 (322)
T ss_dssp T------------------SCCCEEEEEEESCGG----------------------------------------------
T ss_pred c------------------cCCceEEEEecCChh----------------------------------------------
Confidence 0 123588888887321
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.|.+++||+..+.++.++.++..+|++..+ ......++++.++.|++. ..++..+.|++
T Consensus 166 ----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~-------------~~~~~~~~~~~l~~la~~--t~g~sg~di~~ 226 (322)
T 3eie_A 166 ----QLDSAIRRRFERRIYIPLPDLAARTTMFEINV-------------GDTPCVLTKEDYRTLGAM--TEGYSGSDIAV 226 (322)
T ss_dssp ----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-------------TTCCCCCCHHHHHHHHHT--TTTCCHHHHHH
T ss_pred ----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHh-------------ccCCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 24577888999999999999999999887521 123556789999999995 56778899999
Q ss_pred HHHHHHHHHHhcC
Q 005670 598 LLENILMDAMYEI 610 (684)
Q Consensus 598 iIe~~l~~al~e~ 610 (684)
+++.+...++.+.
T Consensus 227 l~~~a~~~a~r~~ 239 (322)
T 3eie_A 227 VVKDALMQPIRKI 239 (322)
T ss_dssp HHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777654
No 20
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.84 E-value=2.5e-20 Score=190.58 Aligned_cols=221 Identities=18% Similarity=0.272 Sum_probs=147.1
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC---
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~--- 355 (684)
++|++.+++.+.+.+..... ...++||+||||||||++|+++++.+.
T Consensus 8 ~ig~~~~~~~~~~~~~~~~~------------------------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~ 57 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLAP------------------------------LDKPVLIIGERGTGKELIASRLHYLSSRWQ 57 (265)
T ss_dssp --CCCHHHHHHHHHHHHHTT------------------------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTT
T ss_pred ceeCCHHHHHHHHHHHHHhC------------------------------CCCCEEEECCCCCcHHHHHHHHHHhcCccC
Confidence 68999999988877741100 126899999999999999999999985
Q ss_pred CCEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHH
Q 005670 356 VPFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (684)
Q Consensus 356 ~pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~ 431 (684)
.+|+.++|+.+.+ +.++|...+ ..........+.+..+.+++||||||+.+... +|+.|++
T Consensus 58 ~~~~~v~~~~~~~~~~~~~l~g~~~~-~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~~Ll~ 122 (265)
T 2bjv_A 58 GPFISLNCAALNENLLDSELFGHEAG-AFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQEKLLR 122 (265)
T ss_dssp SCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHHHHHH
T ss_pred CCeEEEecCCCChhHHHHHhcCCccc-ccccccccccchhhhcCCcEEEEechHhcCHH--------------HHHHHHH
Confidence 6899999998752 122222211 11111111234455567899999999999876 8999999
Q ss_pred HHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHh
Q 005670 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (684)
Q Consensus 432 ~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~ 511 (684)
+|+...+. ..| .. .....++.+|+++|. ++++.+.
T Consensus 123 ~l~~~~~~--~~g-------~~-~~~~~~~~iI~atn~-~~~~~~~---------------------------------- 157 (265)
T 2bjv_A 123 VIEYGELE--RVG-------GS-QPLQVNVRLVCATNA-DLPAMVN---------------------------------- 157 (265)
T ss_dssp HHHHCEEC--CCC-------C---CEECCCEEEEEESS-CHHHHHH----------------------------------
T ss_pred HHHhCCee--cCC-------Cc-ccccCCeEEEEecCc-CHHHHHH----------------------------------
Confidence 99832221 011 10 122345778888873 2222221
Q ss_pred hccchhhhhhcCccccccccc-eEEEccccCH--HHHHHHHhchHHHHHHHHHHHHHhcCccc--cccHHHHHHHHHhcC
Q 005670 512 TVESSDLIAYGLIPEFVGRFP-VLVSLLALTE--NQLVQVLTEPKNALGKQYRKMFQMNGVKL--HFTENALRLIAKKAI 586 (684)
Q Consensus 512 ~v~~~dll~~~f~PeLl~R~d-~iI~f~pLse--eel~~Il~~~l~~L~kq~~~~~~~~gi~l--~~s~eAl~~La~~a~ 586 (684)
+..|+++|++||+ ..+.++|+++ +++..+++..+..+.++ .+... .+++++++.|.. +
T Consensus 158 --------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~-------~~~~~~~~~~~~a~~~L~~--~ 220 (265)
T 2bjv_A 158 --------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE-------IKLPLFPGFTERARETLLN--Y 220 (265)
T ss_dssp --------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH-------TTCSSCCCBCHHHHHHHHH--S
T ss_pred --------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH-------hCCCcccCcCHHHHHHHHh--C
Confidence 1247789999996 4699999987 78887776643333221 23333 799999999998 5
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 005670 587 SKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 587 ~~~~GAR~Lr~iIe~~l~~a 606 (684)
.|++++|+|+++|++++..+
T Consensus 221 ~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 221 RWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 78889999999999987643
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.84 E-value=2.5e-20 Score=200.37 Aligned_cols=221 Identities=21% Similarity=0.284 Sum_probs=160.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++.+|+.|.+++..+......... ...++.++||+||||||||++|+++|+.++.+
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~--------------------~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKG--------------------NRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCS--------------------SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhc--------------------CCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4899999999999998654332111000 01224789999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...++.. .......+++.||..|++..
T Consensus 112 ~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 112 FFSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp EEEEEHHHHH-SCC---C-HHHHHHHHHHHH----HTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC
T ss_pred EEEeeHHHHh-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhccc
Confidence 9999999987 6788876 677777776543 3468999999999998765432 12223457888999998421
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
-...+++||+++|..+
T Consensus 183 ------------------~~~~~v~vI~atn~~~---------------------------------------------- 198 (355)
T 2qp9_X 183 ------------------NDSQGVLVLGATNIPW---------------------------------------------- 198 (355)
T ss_dssp ---------------------CCEEEEEEESCGG----------------------------------------------
T ss_pred ------------------ccCCCeEEEeecCCcc----------------------------------------------
Confidence 1224588888887321
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.|.+++||+..+.++.++.++..+|++..+ ......+++..++.|++. ..++..|.|++
T Consensus 199 ----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-------------~~~~~~~~~~~l~~la~~--t~G~sg~dl~~ 259 (355)
T 2qp9_X 199 ----QLDSAIRRRFERRIYIPLPDLAARTTMFEINV-------------GDTPSVLTKEDYRTLGAM--TEGYSGSDIAV 259 (355)
T ss_dssp ----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-------------TTSCBCCCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHH-------------hhCCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 24577888999999999999999999886521 122455789999999996 56777899999
Q ss_pred HHHHHHHHHHhcC
Q 005670 598 LLENILMDAMYEI 610 (684)
Q Consensus 598 iIe~~l~~al~e~ 610 (684)
++++++..++.+.
T Consensus 260 l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 260 VVKDALMQPIRKI 272 (355)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888654
No 22
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.82 E-value=3.8e-21 Score=225.83 Aligned_cols=223 Identities=21% Similarity=0.251 Sum_probs=143.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|.|++++|+.|.+++..+.++.....+ .+ ..++.++||+||||||||++|+++|.+++.+
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~-------~g------------~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLK-------FG------------MTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSS-------SC------------CCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHh-------cC------------CCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 4799999999999999755442111100 00 1234799999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ++|+|+. ++.++++|..+.. ..+|||||||||.+.+.|+....+.+...+++.+.||..|||..
T Consensus 539 f~~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~----~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 539 FISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp EEECCHHHHH-TTTCSSC-HHHHHHHHHHHHT----TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred eEEeccchhh-ccccchH-HHHHHHHHHHHHH----cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 9999999998 7999998 8899999988753 57899999999999998765433333344568999999999621
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
...++++|+|+|..+
T Consensus 613 -------------------~~~~V~vi~aTN~p~---------------------------------------------- 627 (806)
T 3cf2_A 613 -------------------TKKNVFIIGATNRPD---------------------------------------------- 627 (806)
T ss_dssp -------------------SSSSEEEECC-CCSS----------------------------------------------
T ss_pred -------------------CCCCEEEEEeCCCch----------------------------------------------
Confidence 123588888888432
Q ss_pred hhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHH
Q 005670 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 ll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~L 595 (684)
.+.|+++. |||.+|.++.++.++..+|++..+. +..+. .+--++.|++. ..++...+|
T Consensus 628 ----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~-------------~~~~~-~~~dl~~la~~--t~g~SGadi 687 (806)
T 3cf2_A 628 ----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR-------------KSPVA-KDVDLEFLAKM--TNGFSGADL 687 (806)
T ss_dssp ----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS-------------CC--C-CC------------------CH
T ss_pred ----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc-------------CCCCC-CCCCHHHHHHh--CCCCCHHHH
Confidence 24566765 9999999999999999999876321 11111 12235677774 456677899
Q ss_pred HHHHHHHHHHHHhcC
Q 005670 596 RSLLENILMDAMYEI 610 (684)
Q Consensus 596 r~iIe~~l~~al~e~ 610 (684)
+++++.+...++.+.
T Consensus 688 ~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 688 TEICQRACKLAIRES 702 (806)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888887654
No 23
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.82 E-value=8.3e-20 Score=191.49 Aligned_cols=221 Identities=21% Similarity=0.283 Sum_probs=155.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhH--hhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRI--YNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|+|++++|+.|.+++..+..+. +..... .++.++||+||||||||++|+++|+.++
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~---------------------~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGM---------------------TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---------------------CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC---------------------CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 48999999999999997543321 111110 1237899999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...++............+++.||..|++
T Consensus 75 ~~~i~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 75 ANFISIKGPELL-TMWFGES-EANVREIFDKAR----QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp CEEEEECHHHHH-HHHHTTC-TTHHHHHHHHHH----HTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred CCEEEEEhHHHH-hhhcCch-HHHHHHHHHHHH----hcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 999999999887 5788876 556677776643 2367999999999998876533222222334588999999984
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ...++++|+++|..+
T Consensus 149 ~~-------------------~~~~v~vi~atn~~~-------------------------------------------- 165 (301)
T 3cf0_A 149 MS-------------------TKKNVFIIGATNRPD-------------------------------------------- 165 (301)
T ss_dssp SC-------------------TTSSEEEEEEESCGG--------------------------------------------
T ss_pred cc-------------------CCCCEEEEEecCCcc--------------------------------------------
Confidence 11 123588888887321
Q ss_pred hhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
.+.|.+++ ||+.++.++.++.++..+|++.. +...+....++ ++.++.. ..++..+
T Consensus 166 ------~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~-----------l~~~~~~~~~~---~~~la~~--~~g~sg~ 223 (301)
T 3cf0_A 166 ------IIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN-----------LRKSPVAKDVD---LEFLAKM--TNGFSGA 223 (301)
T ss_dssp ------GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH-----------HTTSCBCSSCC---HHHHHHT--CSSCCHH
T ss_pred ------ccChHHhcCCccceEEecCCcCHHHHHHHHHHH-----------HccCCCCccch---HHHHHHH--cCCCCHH
Confidence 13355665 99999999999999999887642 11122222233 4566664 3445556
Q ss_pred HHHHHHHHHHHHHHhcC
Q 005670 594 GLRSLLENILMDAMYEI 610 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~ 610 (684)
+|++++++++..++.+.
T Consensus 224 dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 224 DLTEICQRACKLAIRES 240 (301)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877553
No 24
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.82 E-value=2.9e-20 Score=201.15 Aligned_cols=197 Identities=23% Similarity=0.431 Sum_probs=144.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccccc----cccccchhHHHHHHHHhcccchHhhhcCcEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ----ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~i~~s~l~~----s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEI 404 (684)
.++|++|++||||+.+|+++++..+. +|+.+||+.+.+ +.++|+..+ .++.......+.++.+.+|+||||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g-~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKG-AFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSC-SSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcccc-ccCCcccccCChHhhcCCCeEEecCh
Confidence 67999999999999999999999854 399999998762 233343311 11111223346677889999999999
Q ss_pred cccccccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccC
Q 005670 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (684)
Q Consensus 405 Dkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~ 483 (684)
+.+++. +|.+||++|+ |....+ +..+.+.+ ++.+|+++| .++++.+.++
T Consensus 232 ~~l~~~--------------~Q~~Ll~~l~~~~~~~~--------g~~~~~~~---~~rii~at~-~~l~~~v~~g---- 281 (368)
T 3dzd_A 232 GELDQR--------------VQAKLLRVLETGSFTRL--------GGNQKIEV---DIRVISATN-KNLEEEIKKG---- 281 (368)
T ss_dssp GGSCHH--------------HHHHHHHHHHHSEECCB--------TCCCBEEC---CCEEEEEES-SCHHHHHHTT----
T ss_pred hhCCHH--------------HHHHHHHHHHhCCcccC--------CCCcceee---eeEEEEecC-CCHHHHHHcC----
Confidence 999987 9999999998 443332 12222233 466777777 5666555443
Q ss_pred CCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceE-EEccccCH--HHHHHHHhchHHHHHHHH
Q 005670 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 484 ~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLse--eel~~Il~~~l~~L~kq~ 560 (684)
.|+++|++|+..+ |.++||.+ +|+..++...+..+.+++
T Consensus 282 --------------------------------------~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~ 323 (368)
T 3dzd_A 282 --------------------------------------NFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEY 323 (368)
T ss_dssp --------------------------------------SSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHT
T ss_pred --------------------------------------CccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHc
Confidence 4778899999875 89999998 899998887554443332
Q ss_pred HHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 561 ~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
. .....++++|++.|.. |+|++|+|+|+++|++++.
T Consensus 324 ~------~~~~~~~~~a~~~L~~--~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 324 K------KNCFELSEETKEYLMK--QEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp T------CCCCCBCHHHHHHHHT--CCCTTHHHHHHHHHHHHHH
T ss_pred C------CCCCCcCHHHHHHHHh--CCCCcHHHHHHHHHHHHHH
Confidence 1 1236799999999998 7899999999999999875
No 25
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.81 E-value=5.2e-20 Score=200.24 Aligned_cols=197 Identities=18% Similarity=0.372 Sum_probs=144.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccc----ccccccchhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLT----QARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l~----~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
.++|++|++||||+++|++++.... .||+.+||+.+. ++..+|+..+. +........+.++.+.+|+|||||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~-~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGA-FTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTS-STTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCC-CCCcccccCCceeeCCCcEEEEcC
Confidence 6789999999999999999999874 689999999875 23344443211 111112345667788999999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|+.++.. +|.+||++|+ +....+ +....+. .++.+|+++| .++++.+.++
T Consensus 240 i~~l~~~--------------~q~~Ll~~l~~~~~~~~--------g~~~~~~---~~~rii~at~-~~l~~~~~~g--- 290 (387)
T 1ny5_A 240 IGELSLE--------------AQAKLLRVIESGKFYRL--------GGRKEIE---VNVRILAATN-RNIKELVKEG--- 290 (387)
T ss_dssp GGGCCHH--------------HHHHHHHHHHHSEECCB--------TCCSBEE---CCCEEEEEES-SCHHHHHHTT---
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEEeC--------CCCceee---ccEEEEEeCC-CCHHHHHHcC---
Confidence 9999987 9999999998 433322 1122223 3466787777 4566655443
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceE-EEccccCH--HHHHHHHhchHHHHHHH
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEPKNALGKQ 559 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~i-I~f~pLse--eel~~Il~~~l~~L~kq 559 (684)
.|+++|+.|+..+ |.++||.+ +|+..++...+..+.++
T Consensus 291 ---------------------------------------~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~ 331 (387)
T 1ny5_A 291 ---------------------------------------KFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRK 331 (387)
T ss_dssp ---------------------------------------SSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------CccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHH
Confidence 4778888898654 88999987 88888887755444333
Q ss_pred HHHHHHhcCcc-ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 005670 560 YRKMFQMNGVK-LHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 560 ~~~~~~~~gi~-l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
+ +.. ..+++++++.|.. |+|++|+|+|+++|++++..
T Consensus 332 ~-------~~~~~~~~~~a~~~l~~--~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 332 Y-------AKEVEGFTKSAQELLLS--YPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp T-------TCCCCEECHHHHHHHHH--SCCTTHHHHHHHHHHHHHHH
T ss_pred c-------CCCCCCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHHh
Confidence 2 323 4599999999999 78999999999999998864
No 26
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.80 E-value=1.6e-19 Score=199.78 Aligned_cols=221 Identities=20% Similarity=0.297 Sum_probs=156.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh-CC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-~~ 356 (684)
.|+|++++++.|.+++..+........ ....++.++||+||||||||++|+++|+.+ +.
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~--------------------~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~ 194 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFT--------------------GKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 194 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTS--------------------GGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhh--------------------ccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 489999999999999864433211000 011234899999999999999999999999 88
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.++++++. ..|+|.. +..++.+|..+. ...++||||||||.+...+... .......+++.||..|++.
T Consensus 195 ~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~ 265 (444)
T 2zan_A 195 TFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGV 265 (444)
T ss_dssp EEEEECCC----------C-CCTHHHHHHHHH----HSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCS
T ss_pred CEEEEeHHHHH-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCc
Confidence 99999999987 6788876 556777776543 3468999999999998764432 1222345888899988842
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
. ....+++||+++|..+
T Consensus 266 ~------------------~~~~~v~vI~atn~~~--------------------------------------------- 282 (444)
T 2zan_A 266 G------------------VDNDGILVLGATNIPW--------------------------------------------- 282 (444)
T ss_dssp S------------------CCCSSCEEEEEESCGG---------------------------------------------
T ss_pred c------------------cCCCCEEEEecCCCcc---------------------------------------------
Confidence 1 1124588888887321
Q ss_pred hhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHH
Q 005670 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLR 596 (684)
Q Consensus 517 dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr 596 (684)
.+.|.+++||+.++.++.++.++...|++..+ ......+++..++.|+.. ..++..+.|+
T Consensus 283 -----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-------------~~~~~~l~~~~l~~la~~--t~G~sgadl~ 342 (444)
T 2zan_A 283 -----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHL-------------GSTQNSLTEADFQELGRK--TDGYSGADIS 342 (444)
T ss_dssp -----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-------------TTSCEECCHHHHHHHHHH--TTTCCHHHHH
T ss_pred -----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHH-------------hcCCCCCCHHHHHHHHHH--cCCCCHHHHH
Confidence 24577889999999999999999998886521 122456789999999996 5677889999
Q ss_pred HHHHHHHHHHHhcC
Q 005670 597 SLLENILMDAMYEI 610 (684)
Q Consensus 597 ~iIe~~l~~al~e~ 610 (684)
.+++.++..++.+.
T Consensus 343 ~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 343 IIVRDALMQPVRKV 356 (444)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
No 27
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.80 E-value=2.6e-19 Score=210.34 Aligned_cols=220 Identities=20% Similarity=0.280 Sum_probs=164.3
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
+.|.|++++|+.|.+.|..+.++.....+ .+ ..+|.++||+||||||||++|+++|++++.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~-------~g------------~~~p~GILL~GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKA-------IG------------VKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTS-------CC------------CCCCCEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhh-------cC------------CCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999755442111100 00 123589999999999999999999999999
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
+|+.++++++. +.|+|+. +..++.+|..+.. ..++||||||||.+.+.++... +.....+.++||..|+|.
T Consensus 265 ~~~~v~~~~l~-sk~~ges-e~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~ 335 (806)
T 3cf2_A 265 FFFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp EEEEEEHHHHH-SSCTTHH-HHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHC
T ss_pred eEEEEEhHHhh-cccchHH-HHHHHHHHHHHHH----cCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhcc
Confidence 99999999998 7999988 7889999988764 4799999999999998765432 233456889999999842
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
. ...++++|+++|..+
T Consensus 336 ~-------------------~~~~V~VIaaTN~~d--------------------------------------------- 351 (806)
T 3cf2_A 336 K-------------------QRAHVIVMAATNRPN--------------------------------------------- 351 (806)
T ss_dssp C-------------------GGGCEEEEEECSSTT---------------------------------------------
T ss_pred c-------------------ccCCEEEEEecCChh---------------------------------------------
Confidence 1 123588888888432
Q ss_pred hhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHH
Q 005670 517 DLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 517 dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~ 594 (684)
.+.|.|++ ||+..|.++.++.++..+|++.++ .+..+. ++..++.|+.. +.++....
T Consensus 352 -----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l-------------~~~~~~-~dvdl~~lA~~--T~GfsgaD 410 (806)
T 3cf2_A 352 -----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT-------------KNMKLA-DDVDLEQVANE--THGHVGAD 410 (806)
T ss_dssp -----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC-------------SSSEEC-TTCCHHHHHHH--CCSCCHHH
T ss_pred -----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh-------------cCCCCC-cccCHHHHHHh--cCCCCHHH
Confidence 14466665 999999999999999999987521 111211 22236778885 56777889
Q ss_pred HHHHHHHHHHHHHhc
Q 005670 595 LRSLLENILMDAMYE 609 (684)
Q Consensus 595 Lr~iIe~~l~~al~e 609 (684)
|++++..+...++.+
T Consensus 411 L~~Lv~eA~~~A~~r 425 (806)
T 3cf2_A 411 LAALCSEAALQAIRK 425 (806)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999887777654
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=187.37 Aligned_cols=223 Identities=20% Similarity=0.291 Sum_probs=160.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++.+++.|.+.+..+..+... ......++.++||+||||||||++|+++|+.++.+
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~--------------------~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDI--------------------FTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT--------------------SCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhChHh--------------------HhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4899999999999998754332100 00112234799999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..|+|.. ...++.++..+. ...++||||||||.+...+.. +.......+++.||..|++..
T Consensus 145 ~~~i~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 145 FFSISASSLT-SKWVGEG-EKMVRALFAVAR----CQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp EEEEEGGGGC-CSSTTHH-HHHHHHHHHHHH----HTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC--
T ss_pred EEEEehHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhccc
Confidence 9999999988 5788866 566777776543 346799999999999875432 122334458889999998422
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
. ....+++||+++|..+
T Consensus 216 ~-----------------~~~~~v~vI~atn~~~---------------------------------------------- 232 (357)
T 3d8b_A 216 T-----------------SSEDRILVVGATNRPQ---------------------------------------------- 232 (357)
T ss_dssp -------------------CCCCEEEEEEESCGG----------------------------------------------
T ss_pred c-----------------cCCCCEEEEEecCChh----------------------------------------------
Confidence 1 1123588888887321
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.+.+++||+.++.++.++.++..+|+... +.. ..+.+++++++.|++. ..++..+.|+.
T Consensus 233 ----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~-----------~~~--~~~~l~~~~l~~la~~--t~G~s~~dl~~ 293 (357)
T 3d8b_A 233 ----EIDEAARRRLVKRLYIPLPEASARKQIVINL-----------MSK--EQCCLSEEEIEQIVQQ--SDAFSGADMTQ 293 (357)
T ss_dssp ----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHH-----------HHT--SCBCCCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHH-----------Hhh--cCCCccHHHHHHHHHH--cCCCCHHHHHH
Confidence 1346788899999999999999999887652 111 1456889999999996 46667899999
Q ss_pred HHHHHHHHHHhcCC
Q 005670 598 LLENILMDAMYEIP 611 (684)
Q Consensus 598 iIe~~l~~al~e~~ 611 (684)
+++.....++.++.
T Consensus 294 l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 294 LCREASLGPIRSLQ 307 (357)
T ss_dssp HHHHHHTHHHHHCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99988877766543
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=189.08 Aligned_cols=223 Identities=23% Similarity=0.321 Sum_probs=154.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++.+++.|.+.+..+..+... ...+..++.++||+||||||||++|+++|+.++.+
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPEL--------------------FTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT--------------------SCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHH--------------------hcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 4899999999999988644331000 01112234799999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++|+++. ..|+|.. ...+..++..+. ...++||||||||.+...+.. +.......+++.|+..|+|..
T Consensus 176 ~~~v~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 176 FFNISAASLT-SKYVGEG-EKLVRALFAVAR----ELQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEEECSCCC--------C-HHHHHHHHHHHH----HSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC
T ss_pred EEEeeHHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhccc
Confidence 9999999988 5788876 566777776543 246789999999999765332 122233458889999998422
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
. ....+++||+++|..+
T Consensus 247 ~-----------------~~~~~v~vI~atn~~~---------------------------------------------- 263 (389)
T 3vfd_A 247 S-----------------AGDDRVLVMGATNRPQ---------------------------------------------- 263 (389)
T ss_dssp ----------------------CEEEEEEESCGG----------------------------------------------
T ss_pred c-----------------cCCCCEEEEEecCCch----------------------------------------------
Confidence 1 1123588888887321
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.+.+++||+.++.++.++.+++.+|+... +. .....+++++++.|+.. ..++..+.|+.
T Consensus 264 ----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~-----------~~--~~~~~l~~~~~~~la~~--~~g~~~~~l~~ 324 (389)
T 3vfd_A 264 ----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNL-----------LC--KQGSPLTQKELAQLARM--TDGYSGSDLTA 324 (389)
T ss_dssp ----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHH-----------HT--TSCCCSCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHH-----------HH--hcCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 2457788899989999999999999988642 11 12466899999999995 46677789999
Q ss_pred HHHHHHHHHHhcCC
Q 005670 598 LLENILMDAMYEIP 611 (684)
Q Consensus 598 iIe~~l~~al~e~~ 611 (684)
+++.....++.++.
T Consensus 325 L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 325 LAKDAALGPIRELK 338 (389)
T ss_dssp HHHHHTTHHHHTSC
T ss_pred HHHHHHHHHHHhhh
Confidence 99888877776654
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.80 E-value=1.3e-18 Score=180.36 Aligned_cols=223 Identities=26% Similarity=0.337 Sum_probs=158.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++++++.|.+.+..+..+.... ..+..++.++||+||||||||++|+++|+.++.+
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~--------------------~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELF--------------------TGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGS--------------------CGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHH--------------------hcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 48999999999999886443311000 0111234799999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..++|.. +..++.++..+. ...++||||||+|.+...+... .......+++.|+..+++..
T Consensus 82 ~~~i~~~~l~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 82 FLNISAASLT-SKYVGDG-EKLVRALFAVAR----HMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp EEEEESTTTS-SSSCSCH-HHHHHHHHHHHH----HTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC
T ss_pred eEEeeHHHHh-hcccchH-HHHHHHHHHHHH----HcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhccc
Confidence 9999999987 5777765 566677665543 3578999999999998764321 12223457888999998421
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
.. ....++++|+++|..+
T Consensus 153 ~~----------------~~~~~v~vi~~tn~~~---------------------------------------------- 170 (297)
T 3b9p_A 153 GN----------------PDGDRIVVLAATNRPQ---------------------------------------------- 170 (297)
T ss_dssp ----------------------CEEEEEEESCGG----------------------------------------------
T ss_pred cc----------------CCCCcEEEEeecCChh----------------------------------------------
Confidence 10 1123578888877321
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.|.+++||+..+.++.++.++...|++..+ .. ....+++++++.|++. ..++..+.|+.
T Consensus 171 ----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~-----------~~--~~~~~~~~~~~~la~~--~~g~~~~~l~~ 231 (297)
T 3b9p_A 171 ----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLL-----------QK--QGSPLDTEALRRLAKI--TDGYSGSDLTA 231 (297)
T ss_dssp ----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-----------GG--GSCCSCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred ----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHH-----------Hh--cCCCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 14467788999899999999999888876421 11 1346889999999996 46677789999
Q ss_pred HHHHHHHHHHhcC
Q 005670 598 LLENILMDAMYEI 610 (684)
Q Consensus 598 iIe~~l~~al~e~ 610 (684)
+++.....++.+.
T Consensus 232 l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 232 LAKDAALEPIREL 244 (297)
T ss_dssp HHHHHTTHHHHTC
T ss_pred HHHHHHHHHHHHH
Confidence 9998887777655
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=5e-18 Score=179.06 Aligned_cols=206 Identities=24% Similarity=0.266 Sum_probs=148.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.++|++.+++.+...+.....+ ..+..++||+||||||||++|+++|+.++.+
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~---------------------------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKR---------------------------NECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHT---------------------------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred HhCChHHHHHHHHHHHHHHHhc---------------------------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 3799999999999888532110 0013689999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++|..+.. ...+...+.. .+.+++||||||+.+... +++.|++.|++..
T Consensus 83 ~~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 83 IKTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYR 134 (338)
T ss_dssp EEEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSC
T ss_pred eEEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHHhcc
Confidence 99999987641 2234444433 236799999999999876 8999999998543
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
+.+-... ....+.+.++..++++|+++|..+
T Consensus 135 ~~~~~~~---~~~~~~~~~~~~~~~~i~atn~~~---------------------------------------------- 165 (338)
T 3pfi_A 135 LDIIIGS---GPAAQTIKIDLPKFTLIGATTRAG---------------------------------------------- 165 (338)
T ss_dssp C------------CCCCCCCCCCCEEEEEESCGG----------------------------------------------
T ss_pred chhhccc---CccccceecCCCCeEEEEeCCCcc----------------------------------------------
Confidence 3210000 000111234444688888887211
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.|+|++|++.++.|++++.+++.+++...+.. . .+.+++++++.|++ .|++++|.+.+
T Consensus 166 ----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-----------~--~~~~~~~~~~~l~~---~~~G~~r~l~~ 225 (338)
T 3pfi_A 166 ----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-----------L--NKTCEEKAALEIAK---RSRSTPRIALR 225 (338)
T ss_dssp ----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-----------T--TCEECHHHHHHHHH---TTTTCHHHHHH
T ss_pred ----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-----------c--CCCCCHHHHHHHHH---HHCcCHHHHHH
Confidence 2568899999999999999999999888753211 1 46789999999999 36788999999
Q ss_pred HHHHHHHHHH
Q 005670 598 LLENILMDAM 607 (684)
Q Consensus 598 iIe~~l~~al 607 (684)
++++++..+.
T Consensus 226 ~l~~~~~~a~ 235 (338)
T 3pfi_A 226 LLKRVRDFAD 235 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999765544
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.78 E-value=9.5e-18 Score=169.75 Aligned_cols=220 Identities=22% Similarity=0.238 Sum_probs=136.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++++|+.|.+.+.. .... . .....+ ...+.++||+||||||||++|+++|+.++.+
T Consensus 7 ~i~G~~~~~~~l~~~~~~-~~~~----~---~~~~~g------------~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDY-LKSP----E---RFLQLG------------AKVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHCC----C---------------------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCHHHHHHHHHHHHHH-HHCH----H---HHHHcC------------CCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 479999999999988752 1100 0 000000 0123789999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCC-CCCcchHHHHHHHHHHcCc
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~-~d~~~e~vq~~LL~~LEg~ 436 (684)
|+.++++++. ..+.|.. ...+..++..+. ...++||||||+|.+...+.....+ .+......++.|+..+++.
T Consensus 67 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 67 FLAMAGAEFV-EVIGGLG-AARVRSLFKEAR----ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp EEEEETTTTS-SSSTTHH-HHHHHHHHHHHH----HTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred EEEechHHHH-hhccChh-HHHHHHHHHHHH----hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 9999999987 4666655 556666666543 2357899999999997764322111 1122223566677766631
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
. ...++++|+++|..+
T Consensus 141 ~-------------------~~~~~~vi~~tn~~~--------------------------------------------- 156 (262)
T 2qz4_A 141 G-------------------TTDHVIVLASTNRAD--------------------------------------------- 156 (262)
T ss_dssp C-------------------TTCCEEEEEEESCGG---------------------------------------------
T ss_pred C-------------------CCCCEEEEecCCChh---------------------------------------------
Confidence 0 123588888887321
Q ss_pred hhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH-HHHHHHHhcCCCCCCHH
Q 005670 517 DLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGAR 593 (684)
Q Consensus 517 dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e-Al~~La~~a~~~~~GAR 593 (684)
.+.+.+++ ||+..+.+++++.++..+|++..+..+ .+..+.+ ..+.++.. ..++..|
T Consensus 157 -----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~-------------~~~~~~~~~~~~l~~~--~~g~~~~ 216 (262)
T 2qz4_A 157 -----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL-------------KLTQSSTFYSQRLAEL--TPGFSGA 216 (262)
T ss_dssp -----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT-------------TCCBTHHHHHHHHHHT--CTTCCHH
T ss_pred -----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC-------------CCCcchhhHHHHHHHH--CCCCCHH
Confidence 12355666 999999999999999999887632221 3344444 35677774 4556668
Q ss_pred HHHHHHHHHHHHHH
Q 005670 594 GLRSLLENILMDAM 607 (684)
Q Consensus 594 ~Lr~iIe~~l~~al 607 (684)
.|++++++++..+.
T Consensus 217 ~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 217 DIANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99998887665443
No 33
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.78 E-value=3.9e-18 Score=190.44 Aligned_cols=217 Identities=24% Similarity=0.296 Sum_probs=150.2
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|+|++++|+.|.+.+.. ++. .+.... . ..+.++||+||||||||++|+++|..++
T Consensus 17 di~G~~~~~~~l~e~v~~-l~~~~~~~~~g--------------------~-~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEF-LKDPSKFNRIG--------------------A-RMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GCCSCHHHHHHHHHHHHH-HHCTHHHHTTT--------------------C-CCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHH-hhChHHHhhcC--------------------C-CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999998752 211 111000 0 1136899999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.||+.++++++. ..|+|.. +..++.+|..+.. ..++||||||||.+...++....+.+...+.+++.||..|++
T Consensus 75 ~~f~~is~~~~~-~~~~g~~-~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~ 148 (476)
T 2ce7_A 75 VPFFHISGSDFV-ELFVGVG-AARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG 148 (476)
T ss_dssp CCEEEEEGGGTT-TCCTTHH-HHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH
T ss_pred CCeeeCCHHHHH-HHHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc
Confidence 999999999998 5788876 5667788776542 468999999999998876544344555566789999999984
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ...++++|+++|..+
T Consensus 149 ~~-------------------~~~~viVIaaTn~~~-------------------------------------------- 165 (476)
T 2ce7_A 149 FD-------------------SKEGIIVMAATNRPD-------------------------------------------- 165 (476)
T ss_dssp SC-------------------GGGTEEEEEEESCGG--------------------------------------------
T ss_pred cC-------------------CCCCEEEEEecCChh--------------------------------------------
Confidence 11 123588888888321
Q ss_pred hhhhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHH-HHHHHHHhcCCCCCCH
Q 005670 516 SDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTEN-ALRLIAKKAISKNTGA 592 (684)
Q Consensus 516 ~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~e-Al~~La~~a~~~~~GA 592 (684)
.+.|.++ +||+..|.++.++.++..+|++..+ . . ..+.++ .++.++.. ..++..
T Consensus 166 ------~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~-----------~--~--~~l~~~v~l~~la~~--t~G~sg 222 (476)
T 2ce7_A 166 ------ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT-----------R--N--KPLAEDVNLEIIAKR--TPGFVG 222 (476)
T ss_dssp ------GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------T--T--SCBCTTCCHHHHHHT--CTTCCH
T ss_pred ------hhchhhcccCcceeEeecCCCCHHHHHHHHHHHH-----------H--h--CCCcchhhHHHHHHh--cCCCcH
Confidence 1234444 5999999999999999988875421 1 1 122222 25667763 344456
Q ss_pred HHHHHHHHHHHHHHHh
Q 005670 593 RGLRSLLENILMDAMY 608 (684)
Q Consensus 593 R~Lr~iIe~~l~~al~ 608 (684)
|+|+++++++...+..
T Consensus 223 adL~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 223 ADLENLVNEAALLAAR 238 (476)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998877654
No 34
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=3.8e-18 Score=175.55 Aligned_cols=219 Identities=25% Similarity=0.333 Sum_probs=147.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++++++.|.+.+............ . + ..++.++||+||||||||++|+++|+.++.+
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~--~--~---------------~~~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEK--V--G---------------IEPPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHH--H--C---------------CCCCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHh--c--C---------------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4799999999999988643321110000 0 0 0123789999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc---
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--- 434 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE--- 434 (684)
++.++++++. ..+.|.. ...+..++..+. ...++||||||+|.+...+.....+.+ ...+..|+.+++
T Consensus 79 ~~~v~~~~~~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~~~~~---~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 79 FIRVVGSELV-KKFIGEG-ASLVKDIFKLAK----EKAPSIIFIDEIDAIAAKRTDALTGGD---REVQRTLMQLLAEMD 149 (285)
T ss_dssp EEEEEGGGGC-CCSTTHH-HHHHHHHHHHHH----HTCSEEEEEETTHHHHBCCSSSCCGGG---GHHHHHHHHHHHHHH
T ss_pred EEEEehHHHH-HhccchH-HHHHHHHHHHHH----HcCCeEEEEECHHHhcccCccccCCcc---HHHHHHHHHHHHHhh
Confidence 9999999987 5777766 566666666543 346789999999999876443222222 234555555553
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
+.. ...++++|+|+|..+
T Consensus 150 ~~~-------------------~~~~~~vI~ttn~~~------------------------------------------- 167 (285)
T 3h4m_A 150 GFD-------------------ARGDVKIIGATNRPD------------------------------------------- 167 (285)
T ss_dssp TTC-------------------SSSSEEEEEECSCGG-------------------------------------------
T ss_pred CCC-------------------CCCCEEEEEeCCCch-------------------------------------------
Confidence 210 112588888887321
Q ss_pred chhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCH
Q 005670 515 SSDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 515 ~~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GA 592 (684)
.+.|.++. ||+.++.+++++.++..+|++.. +...+.. .+..++.++.. ..++..
T Consensus 168 -------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~-----------~~~~~~~---~~~~~~~l~~~--~~g~~~ 224 (285)
T 3h4m_A 168 -------ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH-----------TRKMNLA---EDVNLEEIAKM--TEGCVG 224 (285)
T ss_dssp -------GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHH-----------HTTSCBC---TTCCHHHHHHH--CTTCCH
T ss_pred -------hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHH-----------HhcCCCC---CcCCHHHHHHH--cCCCCH
Confidence 13355555 99999999999999999988642 1111111 22235667774 456678
Q ss_pred HHHHHHHHHHHHHHHhc
Q 005670 593 RGLRSLLENILMDAMYE 609 (684)
Q Consensus 593 R~Lr~iIe~~l~~al~e 609 (684)
|.|+.+++.+...++.+
T Consensus 225 ~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 225 AELKAICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999988877654
No 35
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=9.4e-18 Score=170.72 Aligned_cols=220 Identities=22% Similarity=0.272 Sum_probs=148.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++++|+.|.+.+.. .... ..-. . .+ ...+.++||+||||||||++|+++|+.++.+
T Consensus 13 ~i~G~~~~~~~l~~~~~~-~~~~---~~~~-~---~~------------~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEY-LREP---SRFQ-K---LG------------GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp GSCSCHHHHHHTHHHHHH-HHCG---GGC---------------------CCCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred HhcCcHHHHHHHHHHHHH-HhCH---HHHH-H---cC------------CCCCCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 489999999999987742 1110 0000 0 00 0113689999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..+.|.. ...++.++..+.. ..++++||||+|.+...+.....+........++.++..|++..
T Consensus 73 ~~~i~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 73 FFTISGSDFV-EMFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp EEEECSCSST-TSCCCCC-HHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred EEEEeHHHHH-HHhhhhh-HHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 9999999987 5677766 5667777765432 35689999999999876543222222333457788888888411
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
...++++|+++|..+
T Consensus 147 -------------------~~~~~~vI~~tn~~~---------------------------------------------- 161 (257)
T 1lv7_A 147 -------------------GNEGIIVIAATNRPD---------------------------------------------- 161 (257)
T ss_dssp -------------------SSSCEEEEEEESCTT----------------------------------------------
T ss_pred -------------------cCCCEEEEEeeCCch----------------------------------------------
Confidence 123578888877321
Q ss_pred hhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHH-HHHHHHhcCCCCCCHHH
Q 005670 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 ll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eA-l~~La~~a~~~~~GAR~ 594 (684)
.+.|.++. ||+..+.++.++.++..+|++..+ . .+.+++++ +..++.. ..++++|+
T Consensus 162 ----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~-----------~----~~~l~~~~~~~~la~~--~~G~~~~d 220 (257)
T 1lv7_A 162 ----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM-----------R----RVPLAPDIDAAIIARG--TPGFSGAD 220 (257)
T ss_dssp ----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------T----TSCBCTTCCHHHHHHT--CTTCCHHH
T ss_pred ----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH-----------h----cCCCCccccHHHHHHH--cCCCCHHH
Confidence 12344444 899999999999999888775421 1 12233333 4555552 34458999
Q ss_pred HHHHHHHHHHHHHhc
Q 005670 595 LRSLLENILMDAMYE 609 (684)
Q Consensus 595 Lr~iIe~~l~~al~e 609 (684)
|++++++++..+..+
T Consensus 221 l~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 221 LANLVNEAALFAARG 235 (257)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877654
No 36
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.74 E-value=6.6e-17 Score=181.47 Aligned_cols=218 Identities=26% Similarity=0.322 Sum_probs=148.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++++|..|.+.+.. +.. ... ........ +.++||+||||||||+||+++|..++.+
T Consensus 32 dv~G~~~~k~~l~~lv~~-l~~----~~~--------------~~~lg~~i-p~GvLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEF-LKN----PSR--------------FHEMGARI-PKGVLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHC----GGG--------------TTTTSCCC-CSEEEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred HcCCcHHHHHHHHHHHHH-hhc----hhh--------------hhhccCCC-CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999988752 211 000 00001111 3579999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++++++. ..++|.. ...++.+|+.+.. ..++|+||||||.+...+.....+.....+..++.|+..|+|..
T Consensus 92 ~i~i~g~~~~-~~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 92 FITASGSDFV-EMFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp EEEEEGGGGT-SSCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred EEEEehhHHH-HhhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 9999999987 5677866 5667888877642 25799999999999876543211222333457788888888421
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
..+.+++|+++|..+
T Consensus 166 -------------------~~~~viviAatn~p~---------------------------------------------- 180 (499)
T 2dhr_A 166 -------------------KDTAIVVMAATNRPD---------------------------------------------- 180 (499)
T ss_dssp -------------------SSCCCEEEECCSCGG----------------------------------------------
T ss_pred -------------------cCccEEEEEecCChh----------------------------------------------
Confidence 012467777777321
Q ss_pred hhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHH-HHHHHHhcCCCCCCHHH
Q 005670 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 ll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eA-l~~La~~a~~~~~GAR~ 594 (684)
.+.|++++ ||+.+|.++.++.++..+|++.++ . .+.+++++ +..|+.. ..++..|+
T Consensus 181 ----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~-------------~--~~~l~~dv~l~~lA~~--t~G~~gad 239 (499)
T 2dhr_A 181 ----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAKR--TPGFVGAD 239 (499)
T ss_dssp ----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT-------------S--SSCCCCSSTTHHHHTT--SCSCCHHH
T ss_pred ----hcCcccccccccceEEecCCCCHHHHHHHHHHHH-------------h--cCCCChHHHHHHHHHh--cCCCCHHH
Confidence 13455655 899999999999999998885421 1 23344444 5556653 23333599
Q ss_pred HHHHHHHHHHHHH
Q 005670 595 LRSLLENILMDAM 607 (684)
Q Consensus 595 Lr~iIe~~l~~al 607 (684)
|+++++++...+.
T Consensus 240 L~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 240 LENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877664
No 37
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.74 E-value=1.4e-17 Score=186.53 Aligned_cols=219 Identities=20% Similarity=0.303 Sum_probs=158.2
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|+|++.+++.|.+.+...... .+..... .++.++||+||||||||++|+++|+.++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~---------------------~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGV---------------------KPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---------------------CCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC---------------------CCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 4899999999999998643221 1111110 1247899999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++|+++. +.|+|+. ...++.+|..+.. ..++||||||||.+.+.+... .......+++.||..|++
T Consensus 264 ~~fv~vn~~~l~-~~~~g~~-~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 264 AFFFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDG 334 (489)
T ss_dssp SEEEEEEHHHHH-TSCTTHH-HHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEchHhh-hhhcchh-HHHHHHHHHHHHh----cCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhc
Confidence 999999999998 6888876 5667777776542 467899999999998864321 122334689999999984
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ...++++|+++|..+
T Consensus 335 ~~-------------------~~~~v~vIaaTn~~~-------------------------------------------- 351 (489)
T 3hu3_A 335 LK-------------------QRAHVIVMAATNRPN-------------------------------------------- 351 (489)
T ss_dssp SC-------------------TTSCEEEEEEESCGG--------------------------------------------
T ss_pred cc-------------------cCCceEEEEecCCcc--------------------------------------------
Confidence 21 123588888888321
Q ss_pred hhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
.+.|.+++ ||+.++.+..++.++..+|++..+ ....+. .+..++.++.. ..++..+
T Consensus 352 ------~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~-------------~~~~l~-~~~~l~~la~~--t~g~s~~ 409 (489)
T 3hu3_A 352 ------SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT-------------KNMKLA-DDVDLEQVANE--THGHVGA 409 (489)
T ss_dssp ------GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT-------------TTSCBC-TTCCHHHHHHT--CTTCCHH
T ss_pred ------ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH-------------hcCCCc-chhhHHHHHHH--ccCCcHH
Confidence 13355655 899999999999999999886521 111221 22235677774 5677789
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 005670 594 GLRSLLENILMDAMYEIP 611 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~~ 611 (684)
.|+.+++++...++.+..
T Consensus 410 dL~~L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 410 DLAALCSEAALQAIRKKM 427 (489)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999888876654
No 38
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=7.1e-18 Score=187.04 Aligned_cols=193 Identities=28% Similarity=0.354 Sum_probs=134.7
Q ss_pred cccChHHHH---HHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh
Q 005670 278 FVIGQERAK---KVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 278 ~VvGQe~ak---~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.++||++++ +.|..++... ...++||+||||||||++|++||+.+
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~--------------------------------~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAG--------------------------------HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHT--------------------------------CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HhCCcHHHHhchHHHHHHHHcC--------------------------------CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 379999999 7777777411 01589999999999999999999999
Q ss_pred CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 355 NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.+|+.+++.... ...++..+..+........++||||||||.+... .|+.||+.||
T Consensus 75 ~~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le 131 (447)
T 3pvs_A 75 NADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIE 131 (447)
T ss_dssp TCEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHH
T ss_pred CCCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHh
Confidence 9999999875432 2234444444332223456799999999999876 7899999998
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
. ..+++|++++...
T Consensus 132 ~-----------------------~~v~lI~att~n~------------------------------------------- 145 (447)
T 3pvs_A 132 D-----------------------GTITFIGATTENP------------------------------------------- 145 (447)
T ss_dssp T-----------------------TSCEEEEEESSCG-------------------------------------------
T ss_pred c-----------------------CceEEEecCCCCc-------------------------------------------
Confidence 2 1255666554110
Q ss_pred chhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHH
Q 005670 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 515 ~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~ 594 (684)
...+.+.|++|+. ++.|.+++.+++.+++...+....+.+ .+..+.+++++++.|++. +++++|.
T Consensus 146 -----~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~------~~~~~~i~~~al~~L~~~---~~Gd~R~ 210 (447)
T 3pvs_A 146 -----SFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGY------GGQDIVLPDETRRAIAEL---VNGDARR 210 (447)
T ss_dssp -----GGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSS------TTSSEECCHHHHHHHHHH---HCSCHHH
T ss_pred -----ccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhh------ccccCcCCHHHHHHHHHH---CCCCHHH
Confidence 0135678889987 777999999999999876322210000 013577999999999997 6788999
Q ss_pred HHHHHHHHHHHH
Q 005670 595 LRSLLENILMDA 606 (684)
Q Consensus 595 Lr~iIe~~l~~a 606 (684)
+.++++.++..+
T Consensus 211 lln~Le~a~~~a 222 (447)
T 3pvs_A 211 ALNTLEMMADMA 222 (447)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999877643
No 39
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.73 E-value=1.8e-16 Score=165.50 Aligned_cols=204 Identities=23% Similarity=0.336 Sum_probs=144.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.++|++.+++.+...+...... . ..+.++||+||||||||++|+++|+.++.+
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~----~-----------------------~~~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKAR----K-----------------------EPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHH----C-----------------------SCCCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred HhhCHHHHHHHHHHHHHHHHcc----C-----------------------CCCCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3799999999998887522110 0 012689999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.++|+.+.. ...+...+..+ .+.+++|||||||.+... .++.|+..++...
T Consensus 66 ~~~~~~~~~~~--------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~ 118 (324)
T 1hqc_A 66 LRVTSGPAIEK--------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFV 118 (324)
T ss_dssp EEEECTTTCCS--------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSE
T ss_pred EEEEeccccCC--------hHHHHHHHHHh-----ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhh
Confidence 99999987642 22233333331 136789999999999876 8999999998443
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
+.+.... . .....+..+..++++|+++|..+
T Consensus 119 ~~~v~~~--~-~~~~~~~~~~~~~~~i~~t~~~~---------------------------------------------- 149 (324)
T 1hqc_A 119 MDIVIGQ--G-PAARTIRLELPRFTLIGATTRPG---------------------------------------------- 149 (324)
T ss_dssp EEECCSS--S-SSCCCEEEECCCCEEEEEESCCS----------------------------------------------
T ss_pred hHHhccc--c-ccccccccCCCCEEEEEeCCCcc----------------------------------------------
Confidence 3321100 0 11122344555788888877221
Q ss_pred hhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHH
Q 005670 518 LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRS 597 (684)
Q Consensus 518 ll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~ 597 (684)
.+.++|++|++.++.|.+++.+++.+++...+ .. ..+.+++++++.|+.+ .+++.|.+++
T Consensus 150 ----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~-----------~~--~~~~~~~~~~~~l~~~---~~G~~r~l~~ 209 (324)
T 1hqc_A 150 ----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDA-----------RL--LGVRITEEAALEIGRR---SRGTMRVAKR 209 (324)
T ss_dssp ----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHH-----------HT--TTCCCCHHHHHHHHHH---SCSCHHHHHH
T ss_pred ----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHH-----------Hh--cCCCCCHHHHHHHHHH---ccCCHHHHHH
Confidence 25678999998899999999999888776521 11 1457899999999997 3567899999
Q ss_pred HHHHHHH
Q 005670 598 LLENILM 604 (684)
Q Consensus 598 iIe~~l~ 604 (684)
+++++..
T Consensus 210 ~l~~~~~ 216 (324)
T 1hqc_A 210 LFRRVRD 216 (324)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8887643
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.73 E-value=2.2e-17 Score=175.66 Aligned_cols=259 Identities=17% Similarity=0.230 Sum_probs=145.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
.++||+.+++.+..++... ..+ ..++.++||+||||||||++|+++|+.++.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~----~~~-----------------------~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMI----REG-----------------------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp TEESCHHHHHHHHHHHHHH----HTT-----------------------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hccChHHHHHHHHHHHHHH----HcC-----------------------CCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3799999999877655311 000 011269999999999999999999999974
Q ss_pred -CEEEEecccccccccccchh------------------------------------------------HHHHHHHHhcc
Q 005670 357 -PFVIADATTLTQARYVGEDV------------------------------------------------ESILYKLLTVS 387 (684)
Q Consensus 357 -pfv~i~~s~l~~s~yvG~~~------------------------------------------------~~~l~~l~~~a 387 (684)
+|+.+++..+. +.+.+... ...++..+..+
T Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 176 (368)
T 3uk6_A 98 TPFTAIAGSEIF-SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAK 176 (368)
T ss_dssp CCEEEEEGGGGS-CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHH
T ss_pred CCcccccchhhh-hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHH
Confidence 89999887644 22222110 11222222221
Q ss_pred cchHhh-----hcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEec-cce
Q 005670 388 DYNVAA-----AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT-KDI 461 (684)
Q Consensus 388 ~~~v~~-----a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~-~ni 461 (684)
...... ..++||||||||.+... .++.|++.++... ...+.+-+ +.+
T Consensus 177 ~~~~~~~g~~~~~~~vl~IDEi~~l~~~--------------~~~~L~~~le~~~-------------~~~~ii~t~~~~ 229 (368)
T 3uk6_A 177 VAEWREEGKAEIIPGVLFIDEVHMLDIE--------------SFSFLNRALESDM-------------APVLIMATNRGI 229 (368)
T ss_dssp HHHHHHHTC---CBCEEEEESGGGSBHH--------------HHHHHHHHTTCTT-------------CCEEEEEESCSE
T ss_pred HHHhhhhccccccCceEEEhhccccChH--------------HHHHHHHHhhCcC-------------CCeeeeecccce
Confidence 111011 12579999999999876 8999999998311 00011111 112
Q ss_pred EEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccC
Q 005670 462 LFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALT 541 (684)
Q Consensus 462 IfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLs 541 (684)
.+|.+++.. ....+.|.|++|+.. +.|++++
T Consensus 230 ~~i~~t~~~------------------------------------------------~~~~l~~~l~sR~~~-i~~~~~~ 260 (368)
T 3uk6_A 230 TRIRGTSYQ------------------------------------------------SPHGIPIDLLDRLLI-VSTTPYS 260 (368)
T ss_dssp EECBTSSCE------------------------------------------------EETTCCHHHHTTEEE-EEECCCC
T ss_pred eeeeccCCC------------------------------------------------CcccCCHHHHhhccE-EEecCCC
Confidence 222221100 001356889999985 7999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCCCccc
Q 005670 542 ENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGDEVID 621 (684)
Q Consensus 542 eeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~~~i~ 621 (684)
.+++.+|++..+. .. .+.++++++++|++.+ ++++.|.+.+++++++..+..+..
T Consensus 261 ~~e~~~il~~~~~-----------~~--~~~~~~~~l~~l~~~~--~~G~~r~~~~ll~~a~~~A~~~~~---------- 315 (368)
T 3uk6_A 261 EKDTKQILRIRCE-----------EE--DVEMSEDAYTVLTRIG--LETSLRYAIQLITAASLVCRKRKG---------- 315 (368)
T ss_dssp HHHHHHHHHHHHH-----------HT--TCCBCHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhCC----------
Confidence 9999999875321 11 4679999999999964 447789999999998877654321
Q ss_pred eEEecccccCCCCCCCcceEEcCcchHHHHHHHHHHhhhhhccccCCCCC
Q 005670 622 AVVVDEEAVGSEDRGCGAKILYGKGALDRYLAQHKRKDLETNVAGADGEP 671 (684)
Q Consensus 622 ~~~id~e~v~~~~~~~~~~i~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~ 671 (684)
..|+.+++..... .+........++.+++++.+......+++|.
T Consensus 316 -~~It~~~v~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (368)
T 3uk6_A 316 -TEVQVDDIKRVYS-----LFLDESRSTQYMKEYQDAFLFNELKGETMDT 359 (368)
T ss_dssp -SSBCHHHHHHHHH-----HSBCHHHHHHHHC------------------
T ss_pred -CCCCHHHHHHHHH-----HhcCHHHHHHHHHHhhhhhhhhcCCcccccc
Confidence 1233333332211 1112233456677777776655555555543
No 41
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.73 E-value=6.9e-17 Score=170.21 Aligned_cols=205 Identities=22% Similarity=0.289 Sum_probs=127.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC-------CEEEEeccccc----------------------------ccccccch
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV-------PFVIADATTLT----------------------------QARYVGED 375 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~-------pfv~i~~s~l~----------------------------~s~yvG~~ 375 (684)
.++||+||||||||++|+++|+.++. +| +|.... ...++|..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccchhhhhccccccCCCcccccCCCcchhhheeec
Confidence 57999999999999999999999863 22 222211 01222221
Q ss_pred -hHHHHHHH-HhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCe
Q 005670 376 -VESILYKL-LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN 453 (684)
Q Consensus 376 -~~~~l~~l-~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~ 453 (684)
....+... .....+.+..+.++|||||||+.+... +++.|++.|+.....+...+ ..
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g-------~~ 181 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDG-------LS 181 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTT-------CC
T ss_pred hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecc-------eE
Confidence 00101100 111234445667899999999999876 89999999984332221111 11
Q ss_pred EEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccce
Q 005670 454 IQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV 533 (684)
Q Consensus 454 i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~ 533 (684)
.. ...++++|+++|..+ ..+.++|++||+.
T Consensus 182 ~~-~~~~~~li~~~n~~~-------------------------------------------------~~l~~~L~~R~~~ 211 (350)
T 1g8p_A 182 IR-HPARFVLVGSGNPEE-------------------------------------------------GDLRPQLLDRFGL 211 (350)
T ss_dssp EE-EECCEEEEEEECSCS-------------------------------------------------CCCCHHHHTTCSE
T ss_pred Ee-eCCceEEEEEeCCCC-------------------------------------------------CCCCHHHHhhcce
Confidence 12 223688888877210 1366889999998
Q ss_pred EEEccccC-HHHHHHHHhchHHH------H----------HHHHHHHHHhcCccccccHHHHHHHHHhcCCCCC-CHHHH
Q 005670 534 LVSLLALT-ENQLVQVLTEPKNA------L----------GKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-GARGL 595 (684)
Q Consensus 534 iI~f~pLs-eeel~~Il~~~l~~------L----------~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~-GAR~L 595 (684)
.+.+++++ .++..+|+...+.. + .+++..........+.++++++++|+++.+..+. ++|.+
T Consensus 212 ~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~ 291 (350)
T 1g8p_A 212 SVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGE 291 (350)
T ss_dssp EEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 89999995 55666777652110 0 0011000111122468999999999998776666 68999
Q ss_pred HHHHHHHHHHHHhc
Q 005670 596 RSLLENILMDAMYE 609 (684)
Q Consensus 596 r~iIe~~l~~al~e 609 (684)
.++++.+...+..+
T Consensus 292 ~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 292 LTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999877666543
No 42
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.70 E-value=2.2e-17 Score=172.85 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=103.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
|.++||+||||||||++|+++|+.++.+|+.++++++. +.|+|.. +..++..|..+........++||||||||++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 47999999999999999999999999999999999988 6888877 677888887764333345789999999999987
Q ss_pred ccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCc
Q 005670 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~ 489 (684)
.++. ..........+++.|+.+||+..... ..+. ....+..+++||+|+|..+
T Consensus 114 ~~~~-~~~~~~~~~~v~~~Ll~~ld~~~~~~------~~~~--~~~~~~~~v~vI~ttN~~~------------------ 166 (293)
T 3t15_A 114 RMGG-TTQYTVNNQMVNATLMNIADNPTNVQ------LPGM--YNKQENARVPIIVTGNDFS------------------ 166 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCC------------------
T ss_pred CCCC-CccccchHHHHHHHHHHHhccccccc------cccc--cccccCCCcEEEEecCCcc------------------
Confidence 5332 11222234568899999998422110 0000 0123456799999998432
Q ss_pred ccccccccCCCchhhhhHHHHhhccchhhhhhcCccccc--cccceEEEccccCHHHHHHHHhc
Q 005670 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~ 551 (684)
.+.|+|+ +||+.++.++ +.++..+|++.
T Consensus 167 --------------------------------~ld~al~R~~R~d~~i~~P--~~~~r~~Il~~ 196 (293)
T 3t15_A 167 --------------------------------TLYAPLIRDGRMEKFYWAP--TREDRIGVCTG 196 (293)
T ss_dssp --------------------------------C--CHHHHHHHEEEEEECC--CHHHHHHHHHH
T ss_pred --------------------------------cCCHHHhCCCCCceeEeCc--CHHHHHHHHHH
Confidence 1335565 5899877643 88999998864
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.69 E-value=2e-16 Score=166.04 Aligned_cols=192 Identities=18% Similarity=0.231 Sum_probs=137.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.++|++++++.|..++... ..++.+|++||||||||++|+++|+.++.+
T Consensus 27 ~ivg~~~~~~~l~~~l~~~-------------------------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~ 75 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKG-------------------------------KIPHIILHSPSPGTGKTTVAKALCHDVNAD 75 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTT-------------------------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEE
T ss_pred HHhCcHHHHHHHHHHHHcC-------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC
Confidence 3799999999999888511 012577888999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccc-cccccccCCCCCcchHHHHHHHHHHcCc
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKMLEGT 436 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~-~~r~~~~~~~d~~~e~vq~~LL~~LEg~ 436 (684)
++.+++++... ......+.......+. ...++||||||+|.+. .. .++.|++.++..
T Consensus 76 ~~~i~~~~~~~-----~~i~~~~~~~~~~~~~---~~~~~vliiDEi~~l~~~~--------------~~~~L~~~le~~ 133 (324)
T 3u61_B 76 MMFVNGSDCKI-----DFVRGPLTNFASAASF---DGRQKVIVIDEFDRSGLAE--------------SQRHLRSFMEAY 133 (324)
T ss_dssp EEEEETTTCCH-----HHHHTHHHHHHHBCCC---SSCEEEEEEESCCCGGGHH--------------HHHHHHHHHHHH
T ss_pred EEEEcccccCH-----HHHHHHHHHHHhhccc---CCCCeEEEEECCcccCcHH--------------HHHHHHHHHHhC
Confidence 99999876431 0111222222222111 1256899999999997 55 899999999821
Q ss_pred eeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccch
Q 005670 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (684)
Q Consensus 437 ~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~ 516 (684)
..++.||+++|...
T Consensus 134 ---------------------~~~~~iI~~~n~~~--------------------------------------------- 147 (324)
T 3u61_B 134 ---------------------SSNCSIIITANNID--------------------------------------------- 147 (324)
T ss_dssp ---------------------GGGCEEEEEESSGG---------------------------------------------
T ss_pred ---------------------CCCcEEEEEeCCcc---------------------------------------------
Confidence 13567788877211
Q ss_pred hhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccH-HHHHHHHHhcCCCCCCHHHH
Q 005670 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE-NALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 517 dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~-eAl~~La~~a~~~~~GAR~L 595 (684)
.+.+++++|+. ++.|.+++.+++.+|+...+..+.+. +... .+.+++ ++++.|++. +++++|.+
T Consensus 148 -----~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~----~~~~--~~~~~~~~~~~~l~~~---~~gd~R~a 212 (324)
T 3u61_B 148 -----GIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEI----CKHE--GIAIADMKVVAALVKK---NFPDFRKT 212 (324)
T ss_dssp -----GSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHH----HHHH--TCCBSCHHHHHHHHHH---TCSCTTHH
T ss_pred -----ccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHH----HHHc--CCCCCcHHHHHHHHHh---CCCCHHHH
Confidence 25577888986 79999999999988887754444333 2223 456787 999999996 56778999
Q ss_pred HHHHHHHH
Q 005670 596 RSLLENIL 603 (684)
Q Consensus 596 r~iIe~~l 603 (684)
.+.++.+.
T Consensus 213 ~~~L~~~~ 220 (324)
T 3u61_B 213 IGELDSYS 220 (324)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHh
Confidence 98888765
No 44
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=163.34 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=150.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|.|.+++|+.|.+.+..++.....-.. ..+.. +.+++|+||||||||++|+++|..++.+
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~------------------~~l~~-~~GvlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKA------------------LGLVT-PAGVLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHH------------------TTCCC-CSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHH------------------cCCCC-CCeEEEECCCCCcHHHHHHHHHHHcCCC
Confidence 4899999999999988665543211100 01111 2569999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
++.+++.++. ..|+|.. +..++.+|+.+. ...++++|+||+|.+...++.... .....+.+.++..|+|..
T Consensus 72 ~i~i~g~~l~-~~~~~~~-~~~i~~vf~~a~----~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~ 142 (274)
T 2x8a_A 72 FISVKGPELL-NMYVGES-ERAVRQVFQRAK----NSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLE 142 (274)
T ss_dssp EEEEETTTTC-SSTTHHH-HHHHHHHHHHHH----HTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCC
T ss_pred EEEEEcHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhccc
Confidence 9999999887 5677765 566777777642 236789999999998765432111 112247788999998421
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
..+.+++++++|..+
T Consensus 143 -------------------~~~~~i~ia~tn~p~---------------------------------------------- 157 (274)
T 2x8a_A 143 -------------------ARQQVFIMAATNRPD---------------------------------------------- 157 (274)
T ss_dssp -------------------STTCEEEEEEESCGG----------------------------------------------
T ss_pred -------------------ccCCEEEEeecCChh----------------------------------------------
Confidence 112366667766321
Q ss_pred hhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcccccc-HHHHHHHHHhcCCCCCCHHH
Q 005670 518 LIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARG 594 (684)
Q Consensus 518 ll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s-~eAl~~La~~a~~~~~GAR~ 594 (684)
.+.|+++. |||..|.++.++.++..+|++..+ ..+....++ +-.++.|+....+.++...+
T Consensus 158 ----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~------------~~~~~~~~~~~~~~~~la~~~~~~g~sgad 221 (274)
T 2x8a_A 158 ----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT------------KNGTKPPLDADVNLEAIAGDLRCDCYTGAD 221 (274)
T ss_dssp ----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT------------TTTBTTBBCTTCCHHHHHTCSGGGSCCHHH
T ss_pred ----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH------------hcccCCCCccccCHHHHHHhhccCCcCHHH
Confidence 13466665 999999999999999999986521 011111121 22356667643345778899
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005670 595 LRSLLENILMDAMYEIP 611 (684)
Q Consensus 595 Lr~iIe~~l~~al~e~~ 611 (684)
|.++++++...++.+..
T Consensus 222 l~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 222 LSALVREASICALRQEM 238 (274)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988876543
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=6.5e-17 Score=166.07 Aligned_cols=176 Identities=24% Similarity=0.293 Sum_probs=119.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchh---HHHHHHHHhcccchHhhhcCcEEEEecccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDV---ESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~---~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 406 (684)
+.++||+||||||||++|+++|+.++.+|+.+++++. ++|... ...++.++..+. ...++||||||||.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAY----KSQLSCVVVDDIER 135 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHH----TSSEEEEEECCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHH----hcCCcEEEEEChhh
Confidence 3799999999999999999999999999999998752 334321 234455554421 23578999999999
Q ss_pred cccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCC
Q 005670 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (684)
Q Consensus 407 l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lg 486 (684)
+...+.. .......+++.|+..+++.. -...++++|+|+|..+
T Consensus 136 l~~~~~~----~~~~~~~~l~~L~~~~~~~~------------------~~~~~~~ii~ttn~~~--------------- 178 (272)
T 1d2n_A 136 LLDYVPI----GPRFSNLVLQALLVLLKKAP------------------PQGRKLLIIGTTSRKD--------------- 178 (272)
T ss_dssp HTTCBTT----TTBCCHHHHHHHHHHTTCCC------------------STTCEEEEEEEESCHH---------------
T ss_pred hhccCCC----ChhHHHHHHHHHHHHhcCcc------------------CCCCCEEEEEecCChh---------------
Confidence 8653211 11223446777777776310 0123477888877321
Q ss_pred CCcccccccccCCCchhhhhHHHHhhccchhhhhhcCcc-ccccccceEEEccccCH-HHHHHHHhchHHHHHHHHHHHH
Q 005670 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIP-EFVGRFPVLVSLLALTE-NQLVQVLTEPKNALGKQYRKMF 564 (684)
Q Consensus 487 f~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~P-eLl~R~d~iI~f~pLse-eel~~Il~~~l~~L~kq~~~~~ 564 (684)
. +.+ .+.+||+..+.+++++. +++.+++..
T Consensus 179 ----------------------~-------------l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~------------- 210 (272)
T 1d2n_A 179 ----------------------V-------------LQEMEMLNAFSTTIHVPNIATGEQLLEALEL------------- 210 (272)
T ss_dssp ----------------------H-------------HHHTTCTTTSSEEEECCCEEEHHHHHHHHHH-------------
T ss_pred ----------------------h-------------cchhhhhcccceEEcCCCccHHHHHHHHHHh-------------
Confidence 0 011 46789999999999998 777666543
Q ss_pred HhcCccccccHHHHHHHHHhc--CCCCCCHHHHHHHHHHHH
Q 005670 565 QMNGVKLHFTENALRLIAKKA--ISKNTGARGLRSLLENIL 603 (684)
Q Consensus 565 ~~~gi~l~~s~eAl~~La~~a--~~~~~GAR~Lr~iIe~~l 603 (684)
...+++++++.+++.. |.|..++|.+.++++.+.
T Consensus 211 -----~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 211 -----LGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp -----HTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred -----cCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 1247889999998763 445668999999998753
No 46
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.67 E-value=1.5e-16 Score=167.63 Aligned_cols=229 Identities=23% Similarity=0.262 Sum_probs=148.9
Q ss_pred HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005670 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 270 el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAra 349 (684)
.+...+.+.|+||+++++.+..++.. ..++||+||||||||++|++
T Consensus 20 ~~~~~~~~~i~g~~~~~~~l~~~l~~----------------------------------~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 20 EVIDEVGKVVVGQKYMINRLLIGICT----------------------------------GGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHTTTCCSCHHHHHHHHHHHHH----------------------------------TCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHhccceeCcHHHHHHHHHHHHc----------------------------------CCeEEEECCCCCcHHHHHHH
Confidence 46777778899999999988877741 16899999999999999999
Q ss_pred HHHHhCCCEEEEeccc-ccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHH
Q 005670 350 LARYVNVPFVIADATT-LTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (684)
Q Consensus 350 LA~~l~~pfv~i~~s~-l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~ 428 (684)
+|+.++.+++.++++. ...+.+.|..........+....+.+ ..+||||||++.+.+. +++.
T Consensus 66 la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~--------------~~~~ 128 (331)
T 2r44_A 66 LAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAK--------------VQSA 128 (331)
T ss_dssp HHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHH--------------HHHH
T ss_pred HHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHH--------------HHHH
Confidence 9999999999999852 22122222210000000000001100 2379999999999876 8999
Q ss_pred HHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHH
Q 005670 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (684)
Q Consensus 429 LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~ 508 (684)
|++.|+...+.+ . |.... ...++++|+|+|..+. .|
T Consensus 129 Ll~~l~~~~~~~--~-------g~~~~-~~~~~~viat~np~~~------------~~---------------------- 164 (331)
T 2r44_A 129 LLECMQEKQVTI--G-------DTTYP-LDNPFLVLATQNPVEQ------------EG---------------------- 164 (331)
T ss_dssp HHHHHHHSEEEE--T-------TEEEE-CCSSCEEEEEECTTCC------------SC----------------------
T ss_pred HHHHHhcCceee--C-------CEEEE-CCCCEEEEEecCCCcc------------cC----------------------
Confidence 999998554443 1 11111 2235677777662210 00
Q ss_pred HHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHH-------------HHHHHHHHHhcCccccccH
Q 005670 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL-------------GKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 509 Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L-------------~kq~~~~~~~~gi~l~~s~ 575 (684)
.+.+.++|++||+..+.+.+++.++..+|++...... ..+.++.. ..+.+++
T Consensus 165 -----------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~v~~~~ 229 (331)
T 2r44_A 165 -----------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI----NKVTISE 229 (331)
T ss_dssp -----------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH----HTCBCCH
T ss_pred -----------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh----ccCCCCH
Confidence 0136788999999889999999999999987643210 11111111 2567899
Q ss_pred HHHHHHHHhcC-----------------CCCCCHHHHHHHHHHHHHHHHh
Q 005670 576 NALRLIAKKAI-----------------SKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 576 eAl~~La~~a~-----------------~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
++++++++... ..+.+.|.+.++++.+-..+..
T Consensus 230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l 279 (331)
T 2r44_A 230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF 279 (331)
T ss_dssp HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH
Confidence 99999987531 1244789999998876655544
No 47
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.65 E-value=2.9e-15 Score=145.20 Aligned_cols=187 Identities=22% Similarity=0.293 Sum_probs=130.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|++++++.|...+... ...+++|+||||||||++|+++++.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3799999999998888511 01469999999999999999999986
Q ss_pred --CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHH
Q 005670 355 --NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 355 --~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
..+++.++++...... .....+........ .....+.||+|||+|.+... .++.|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~ 125 (226)
T 2chg_A 66 NWRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (226)
T ss_dssp GGGGGEEEEETTCTTCHH----HHHHHHHHHHTSCC--STTCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred ccccceEEeccccccChH----HHHHHHHHHhcccC--CCccCceEEEEeChhhcCHH--------------HHHHHHHH
Confidence 3568888876543110 11122222222111 11246789999999999775 78889999
Q ss_pred HcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhh
Q 005670 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~ 512 (684)
++.. ..++++|++++...
T Consensus 126 l~~~---------------------~~~~~~i~~~~~~~----------------------------------------- 143 (226)
T 2chg_A 126 MEMY---------------------SKSCRFILSCNYVS----------------------------------------- 143 (226)
T ss_dssp HHHT---------------------TTTEEEEEEESCGG-----------------------------------------
T ss_pred HHhc---------------------CCCCeEEEEeCChh-----------------------------------------
Confidence 9720 12466677766210
Q ss_pred ccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCH
Q 005670 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GA 592 (684)
.+.+.+.+|+. ++.|++++.+++.+++...+.. . .+.+++++++.|++. ++++.
T Consensus 144 ---------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~~~~~~~l~~~---~~g~~ 197 (226)
T 2chg_A 144 ---------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK-----------E--GVKITEDGLEALIYI---SGGDF 197 (226)
T ss_dssp ---------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-----------H--TCCBCHHHHHHHHHH---HTTCH
T ss_pred ---------hcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHH---cCCCH
Confidence 24467888887 8999999999998887652211 1 455899999999985 36678
Q ss_pred HHHHHHHHHHHH
Q 005670 593 RGLRSLLENILM 604 (684)
Q Consensus 593 R~Lr~iIe~~l~ 604 (684)
|.+.+++++++.
T Consensus 198 r~l~~~l~~~~~ 209 (226)
T 2chg_A 198 RKAINALQGAAA 209 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.65 E-value=4.7e-18 Score=173.53 Aligned_cols=218 Identities=26% Similarity=0.343 Sum_probs=134.7
Q ss_pred cccChHHHHHHHHHHHHhh-hhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 278 FVIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
.|+|++++++.|.+.+... +...+..... ..+.++||+||||||||++|+++|+.++.
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGA---------------------KIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSC---------------------CCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCC---------------------CCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3799999999999877521 0111111100 11367999999999999999999999999
Q ss_pred CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccC-CCCCcchHHHHHHHHHHcC
Q 005670 357 PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI-SRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 357 pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~-~~d~~~e~vq~~LL~~LEg 435 (684)
+|+.++++++. ..+.|.. ...++.++..+. ...++||||||+|.+...+...+. ..+.....+++.|+..+++
T Consensus 71 ~~~~v~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 71 PFFSMGGSSFI-EMFVGLG-ASRVRDLFETAK----KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp CCCCCCSCTTT-TSCSSSC-SSSSSTTHHHHH----HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred CEEEechHHHH-HhhcchH-HHHHHHHHHHHH----hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 99999999887 4566654 222333333322 235689999999999876432211 1122222356677777763
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. -...++++|+|+|..+
T Consensus 145 ~~------------------~~~~~v~vi~ttn~~~-------------------------------------------- 162 (268)
T 2r62_A 145 FG------------------SENAPVIVLAATNRPE-------------------------------------------- 162 (268)
T ss_dssp SS------------------CSCSCCEEEECBSCCT--------------------------------------------
T ss_pred cc------------------cCCCCEEEEEecCCch--------------------------------------------
Confidence 10 0123478888887321
Q ss_pred hhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
.+.|.+++ ||+..+.+++++.++..+|++..+ . +..+. ++..++.|+.. ..++..|
T Consensus 163 ------~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~-----------~--~~~~~-~~~~~~~la~~--~~g~~g~ 220 (268)
T 2r62_A 163 ------ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI-----------K--GVKLA-NDVNLQEVAKL--TAGLAGA 220 (268)
T ss_dssp ------TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT-----------S--SSCCC-SSCCTTTTTSS--SCSSCHH
T ss_pred ------hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH-----------h--cCCCC-CccCHHHHHHH--cCCCCHH
Confidence 13345555 899899999999999998875421 1 11111 22224556664 3445569
Q ss_pred HHHHHHHHHHHHH
Q 005670 594 GLRSLLENILMDA 606 (684)
Q Consensus 594 ~Lr~iIe~~l~~a 606 (684)
+|+++++++...+
T Consensus 221 dl~~l~~~a~~~a 233 (268)
T 2r62_A 221 DLANIINEAALLA 233 (268)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876644
No 49
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.65 E-value=2.7e-15 Score=154.82 Aligned_cols=217 Identities=26% Similarity=0.324 Sum_probs=137.2
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|+|++++++.+...+.. +.. ..... .... +.+++|+||||||||+++++++..++
T Consensus 41 ~i~g~~~~~~~l~~l~~~-~~~~~~l~~~--------------------~~~~-~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEF-LKNPSRFHEM--------------------GARI-PKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GSSSCHHHHHHHHHHHHH-HHCHHHHHHT--------------------TCCC-CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCChHHHHHHHHHHHHH-HHCHHHHHHc--------------------CCCC-CCeEEEECCCcChHHHHHHHHHHHcC
Confidence 479999999999887742 211 11110 0111 24699999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+++.+++.++. ..+.+.. ...+..+++.+.. ..++++|+||+|.+...+...............+.++..|+|
T Consensus 99 ~~~i~~~~~~~~-~~~~~~~-~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg 172 (278)
T 1iy2_A 99 VPFITASGSDFV-EMFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 172 (278)
T ss_dssp CCEEEEEHHHHH-HSTTTHH-HHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT
T ss_pred CCEEEecHHHHH-HHHhhHH-HHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 999999998776 3455544 3455666655321 246899999999987653321111111223455667777763
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
.. ..+.+++++++|..+
T Consensus 173 g~-------------------~~~~~i~~a~t~~p~-------------------------------------------- 189 (278)
T 1iy2_A 173 FE-------------------KDTAIVVMAATNRPD-------------------------------------------- 189 (278)
T ss_dssp CC-------------------TTCCEEEEEEESCTT--------------------------------------------
T ss_pred CC-------------------CCCCEEEEEecCCch--------------------------------------------
Confidence 11 012356666665221
Q ss_pred hhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHH-HHHHHHhcCCCCCCH
Q 005670 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGA 592 (684)
Q Consensus 516 ~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eA-l~~La~~a~~~~~GA 592 (684)
.+.|.++. ||+.++.+++++.++..+|++..+ . .+.+++++ +..++.. ..++..
T Consensus 190 ------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-------------~--~~~~~~~~~~~~la~~--~~G~~~ 246 (278)
T 1iy2_A 190 ------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAKR--TPGFVG 246 (278)
T ss_dssp ------SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-------------T--TSCBCTTCCHHHHHHT--CTTCCH
T ss_pred ------hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH-------------c--cCCCCcccCHHHHHHH--cCCCCH
Confidence 12345554 899999999999999999886411 1 23344443 6667764 334445
Q ss_pred HHHHHHHHHHHHHHHh
Q 005670 593 RGLRSLLENILMDAMY 608 (684)
Q Consensus 593 R~Lr~iIe~~l~~al~ 608 (684)
|+|++++++++..+..
T Consensus 247 ~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 247 ADLENLLNEAALLAAR 262 (278)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998877654
No 50
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.65 E-value=4.2e-15 Score=150.88 Aligned_cols=218 Identities=26% Similarity=0.324 Sum_probs=141.0
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|+|+++++..+...+.. +.. ..... .... +.+++|+||||||||+++++++..++
T Consensus 17 ~i~g~~~~~~~l~~l~~~-~~~~~~~~~~--------------------~~~~-~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEF-LKNPSRFHEM--------------------GARI-PKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GCCSCHHHHHHHHHHHHH-HHCHHHHHHT--------------------TCCC-CSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCcHHHHHHHHHHHHH-HHCHHHHHHc--------------------CCCC-CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 379999999999887642 221 11110 0111 25699999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+++.+++.++. ..+.|.. ...+..+++.+.. ..++++|+||+|.+...+..............++.++..|+|
T Consensus 75 ~~~i~~~~~~~~-~~~~~~~-~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g 148 (254)
T 1ixz_A 75 VPFITASGSDFV-EMFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 148 (254)
T ss_dssp CCEEEEEHHHHH-HSCTTHH-HHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT
T ss_pred CCEEEeeHHHHH-HHHhhHH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC
Confidence 999999988776 3455554 4556666665431 246899999999987654321111122234467788888874
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
... .+.+++++++|..+
T Consensus 149 ~~~-------------------~~~~i~~a~t~~p~-------------------------------------------- 165 (254)
T 1ixz_A 149 FEK-------------------DTAIVVMAATNRPD-------------------------------------------- 165 (254)
T ss_dssp CCT-------------------TCCEEEEEEESCGG--------------------------------------------
T ss_pred CCC-------------------CCCEEEEEccCCch--------------------------------------------
Confidence 210 12356666665221
Q ss_pred hhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHH-HHHHHHhcCCCCCCH
Q 005670 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENA-LRLIAKKAISKNTGA 592 (684)
Q Consensus 516 ~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eA-l~~La~~a~~~~~GA 592 (684)
.+.|.++. ||+..+.++.++.++..+|++... . .+.+++++ +..++.. ..++.+
T Consensus 166 ------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-------------~--~~~~~~~~~~~~la~~--~~G~~~ 222 (254)
T 1ixz_A 166 ------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-------------R--GKPLAEDVDLALLAKR--TPGFVG 222 (254)
T ss_dssp ------GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH-------------T--TSCBCTTCCHHHHHHT--CTTCCH
T ss_pred ------hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH-------------c--CCCCCcccCHHHHHHH--cCCCCH
Confidence 13455665 899999999999999999885411 1 22344333 6677774 345556
Q ss_pred HHHHHHHHHHHHHHHhc
Q 005670 593 RGLRSLLENILMDAMYE 609 (684)
Q Consensus 593 R~Lr~iIe~~l~~al~e 609 (684)
|+|+++++++...+..+
T Consensus 223 ~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 223 ADLENLLNEAALLAARE 239 (254)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999988777643
No 51
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=6.8e-17 Score=185.09 Aligned_cols=258 Identities=19% Similarity=0.187 Sum_probs=152.3
Q ss_pred HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005670 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 270 el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAra 349 (684)
.+.+.+...|+||+.+|+.+..++.....+.. .+ .......++||+||||||||++|++
T Consensus 288 ~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~--------------------~~-~~~r~~~~vLL~GppGtGKT~LAr~ 346 (595)
T 3f9v_A 288 RIISSIAPSIYGHWELKEALALALFGGVPKVL--------------------ED-TRIRGDIHILIIGDPGTAKSQMLQF 346 (595)
T ss_dssp THHHHTSSTTSCCHHHHHHHTTTTTCCCCEET--------------------TT-TEECCSCCEEEEESSCCTHHHHHHS
T ss_pred HHHHhhcchhcChHHHHHHHHHHHhCCCcccc--------------------cC-CCcCCCcceEEECCCchHHHHHHHH
Confidence 37778888899999999887655531110000 00 0111225999999999999999999
Q ss_pred HHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHH
Q 005670 350 LARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 350 LA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
+|+.++..++..... ...+++.+..........+...++.+..+.++||||||||++.+. +++.|
T Consensus 347 la~~~~r~~~~~~~~-~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~--------------~q~~L 411 (595)
T 3f9v_A 347 ISRVAPRAVYTTGKG-STAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE--------------DRVAI 411 (595)
T ss_dssp SSTTCSCEECCCTTC-STTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------HHHHH
T ss_pred HHHhCCCceecCCCc-cccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------Hhhhh
Confidence 999997665442210 111222222211111111222345566678899999999999887 89999
Q ss_pred HHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHH
Q 005670 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~L 509 (684)
+++||...+.+...| ..... ..++.+|+|+|... +.++.... +
T Consensus 412 l~~le~~~i~i~~~g-------~~~~~-~~~~~vIaatNp~~-------G~~~~~~~----------------------~ 454 (595)
T 3f9v_A 412 HEAMEQQTVSIAKAG-------IVAKL-NARAAVIAAGNPKF-------GRYISERP----------------------V 454 (595)
T ss_dssp HHHHHSSSEEEESSS-------SEEEE-CCCCEEEEEECCTT-------CCSCTTSC----------------------S
T ss_pred HHHHhCCEEEEecCC-------cEEEe-cCceEEEEEcCCcC-------CccCcccC----------------------c
Confidence 999996555543222 11222 35688899988431 11110000 0
Q ss_pred HhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHH-------------HHHHHHHHHHHhcCccccccHH
Q 005670 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN-------------ALGKQYRKMFQMNGVKLHFTEN 576 (684)
Q Consensus 510 l~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~-------------~L~kq~~~~~~~~gi~l~~s~e 576 (684)
.+ .-.+.++|++|||.++.+.++..++...|+++.+. ...++|....+ ..+...++++
T Consensus 455 ~~--------ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~ls~e 525 (595)
T 3f9v_A 455 SD--------NINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR-KYVTPKITSE 525 (595)
T ss_dssp CT--------TTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH-HHHCCCCCCC
T ss_pred hh--------ccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH-HhCCCCCCHH
Confidence 00 11478999999998777777666554444443221 11122222111 1123378888
Q ss_pred HHHHHHHhcC------------CCCCCHHHHHHHHHHHHHHHHhc
Q 005670 577 ALRLIAKKAI------------SKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 577 Al~~La~~a~------------~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
+.+.|.++-. .++.++|.|.++++..-..+..+
T Consensus 526 a~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~ 570 (595)
T 3f9v_A 526 AKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMA 570 (595)
T ss_dssp THHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHh
Confidence 9999988622 36788999999998766555443
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.62 E-value=7.7e-15 Score=162.57 Aligned_cols=105 Identities=27% Similarity=0.348 Sum_probs=79.9
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC-
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN- 355 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~- 355 (684)
+.|+||+++++.+...+.. +..+ ..++.++||+||||||||++|+++|+.++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~----~~~~-----------------------~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVEL----IKSK-----------------------KMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTEESCHHHHHHHHHHHHH----HHTT-----------------------CCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhccCHHHHHHHHHHHHHH----HHhC-----------------------CCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 4589999999998887741 1110 01247999999999999999999999998
Q ss_pred -CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccc
Q 005670 356 -VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 356 -~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~ 412 (684)
.+|+.++++++. +.|+|.. +. +.+.|..+.+ .....++||||||||.+.+.++
T Consensus 90 ~~~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 90 KVPFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp TSCEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC--
T ss_pred CceEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhcccccC
Confidence 899999999998 7888876 44 7788877622 1234678999999988876543
No 53
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.62 E-value=5.7e-16 Score=145.19 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=74.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|++.+++.+.+.+...- ....++||+||||||||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a------------------------------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS------------------------------ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT------------------------------TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CceeCCHHHHHHHHHHHHHh------------------------------CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 47999999999988875110 012689999999999999999999987
Q ss_pred CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 355 NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
+.||+ ++|+.+... .. .... ++.+.+++|||||||.+.+. +|+.|+.+|+
T Consensus 52 ~~~~v-~~~~~~~~~----~~----~~~~-------~~~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~ 101 (145)
T 3n70_A 52 QGEFV-YRELTPDNA----PQ----LNDF-------IALAQGGTLVLSHPEHLTRE--------------QQYHLVQLQS 101 (145)
T ss_dssp TSCCE-EEECCTTTS----SC----HHHH-------HHHHTTSCEEEECGGGSCHH--------------HHHHHHHHHH
T ss_pred CCCEE-EECCCCCcc----hh----hhcH-------HHHcCCcEEEEcChHHCCHH--------------HHHHHHHHHh
Confidence 67999 999987632 11 1112 23346689999999999887 8999999996
No 54
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.61 E-value=1.4e-17 Score=196.84 Aligned_cols=224 Identities=21% Similarity=0.244 Sum_probs=154.3
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCccc-ccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTV-ELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
+.|+|++++|+.|.+++..+..+... .... ..++.++||+||||||||++|+++|+.++
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~--------------------~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDK--------------------FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTT--------------------TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred cccccchhhhhhHHHHHHhhhhchHH--------------------HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999887432221000 0000 12347899999999999999999999999
Q ss_pred CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcC
Q 005670 356 VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (684)
Q Consensus 356 ~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg 435 (684)
.+|+.++++++. ..|+|.. +..++.+|+.+.. ..++||||||||.+...++......+.....+++.||..|++
T Consensus 537 ~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~ 610 (806)
T 1ypw_A 537 ANFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp CCCCCCCCSSST-TCCTTTS-SHHHHHHHHHHHH----HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-
T ss_pred CCEEEEechHhh-hhhcCcc-HHHHHHHHHHHHh----cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhc
Confidence 999999999998 6899987 6778888877543 467999999999998775432222222334588889998884
Q ss_pred ceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccc
Q 005670 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (684)
Q Consensus 436 ~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~ 515 (684)
. ....+++||+|+|..+
T Consensus 611 ~-------------------~~~~~v~vI~tTN~~~-------------------------------------------- 627 (806)
T 1ypw_A 611 M-------------------STKKNVFIIGATNRPD-------------------------------------------- 627 (806)
T ss_dssp ------------------------CCBCCCCCBSCG--------------------------------------------
T ss_pred c-------------------cccCCeEEEEecCCcc--------------------------------------------
Confidence 2 1235688888888432
Q ss_pred hhhhhhcCcccccc--ccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 516 SDLIAYGLIPEFVG--RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 516 ~dll~~~f~PeLl~--R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
.+.|++++ ||+.+|.|+.++.++..+|++..+... .+ ..+..++.|++. ..++..+
T Consensus 628 ------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------------~~-~~~~~l~~la~~--t~g~sga 685 (806)
T 1ypw_A 628 ------IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-------------PV-AKDVDLEFLAKM--TNGFSGA 685 (806)
T ss_dssp ------GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC------------------CCCCSCSCGG--GSSSCCH
T ss_pred ------cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC-------------CC-CcccCHHHHHHh--ccccCHH
Confidence 14577777 999999999999999999998743211 00 011112334443 3455668
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 005670 594 GLRSLLENILMDAMYEIP 611 (684)
Q Consensus 594 ~Lr~iIe~~l~~al~e~~ 611 (684)
.|+++++.+...++.+..
T Consensus 686 di~~l~~~a~~~a~~~~~ 703 (806)
T 1ypw_A 686 DLTEICQRACKLAIRESI 703 (806)
T ss_dssp HHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998888877654
No 55
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.60 E-value=2.6e-14 Score=160.53 Aligned_cols=230 Identities=15% Similarity=0.185 Sum_probs=147.7
Q ss_pred HHHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHH
Q 005670 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 269 ~el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAr 348 (684)
..+.+.+.+.|+||+++++.+..++.. ..++||+||||||||++|+
T Consensus 14 ~~l~~~l~~~ivGq~~~i~~l~~al~~----------------------------------~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 14 SRLSSSLEKGLYERSHAIRLCLLAALS----------------------------------GESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHH----------------------------------TCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc----------------------------------CCeeEeecCchHHHHHHHH
Confidence 357888999999999999988877741 2699999999999999999
Q ss_pred HHHHHhC--CCEEEEecccccccccccchhHHHH--HHHHh-cccchHhhhcCcEEEEecccccccccccccCCCCCcch
Q 005670 349 TLARYVN--VPFVIADATTLTQARYVGEDVESIL--YKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 349 aLA~~l~--~pfv~i~~s~l~~s~yvG~~~~~~l--~~l~~-~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (684)
++|+.++ .+|...++.-.+++.++|....... ...+. ...+.+ +.++|||||||+++.+.
T Consensus 60 aLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~------------- 124 (500)
T 3nbx_X 60 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPA------------- 124 (500)
T ss_dssp HGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGGGCCHH-------------
T ss_pred HHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHhhhcHH-------------
Confidence 9999984 4677666653233344442111110 11121 111111 14679999999998876
Q ss_pred HHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchh
Q 005670 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~ 503 (684)
+++.|+.+|+...+.+ . |.. ......++|+|+|... .
T Consensus 125 -~q~~LL~~lee~~v~i--~-------G~~--~~~~~~~iI~ATN~lp-------------------e------------ 161 (500)
T 3nbx_X 125 -ILNTLLTAINERQFRN--G-------AHV--EKIPMRLLVAASNELP-------------------E------------ 161 (500)
T ss_dssp -HHHHHHHHHHSSEEEC--S-------SSE--EECCCCEEEEEESSCC-------------------C------------
T ss_pred -HHHHHHHHHHHHhccC--C-------CCc--CCcchhhhhhccccCC-------------------C------------
Confidence 9999999998655543 1 111 2222234566666210 0
Q ss_pred hhhHHHHhhccchhhhhhcCccccccccceEEEccccCH-HHHHHHHhchHH--------------HHHHHHHHHHHhcC
Q 005670 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTE-NQLVQVLTEPKN--------------ALGKQYRKMFQMNG 568 (684)
Q Consensus 504 ~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLse-eel~~Il~~~l~--------------~L~kq~~~~~~~~g 568 (684)
...+.+++++||...+.++++++ ++...|+..... .-..++++..
T Consensus 162 ----------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~---- 221 (500)
T 3nbx_X 162 ----------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI---- 221 (500)
T ss_dssp ----------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH----
T ss_pred ----------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC----
Confidence 01245789999988899999987 677888876321 1112222221
Q ss_pred ccccccHHHHHHHHHhcC-------CCCCCHHHHHHHHHHHHHHHHhcC
Q 005670 569 VKLHFTENALRLIAKKAI-------SKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 569 i~l~~s~eAl~~La~~a~-------~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
..+.+++++++++++... ..+.+.|.+..++..+-..+..+.
T Consensus 222 ~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 222 GEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 156789999999987641 245678999999876655555443
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.59 E-value=5e-14 Score=137.63 Aligned_cols=185 Identities=26% Similarity=0.289 Sum_probs=125.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.++|++++++.|...+... ..+..++|+||||||||++|+++++.+...
T Consensus 24 ~~~g~~~~~~~l~~~l~~~-------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLG-------------------------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHT-------------------------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHhCcHHHHHHHHHHHHcC-------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3799999999998887411 012579999999999999999999988432
Q ss_pred E------------------------EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 F------------------------VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 f------------------------v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
. +.++... ......+..++...........+.+|+|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~--- 141 (250)
T 1njg_A 73 TGITATPCGVCDNCREIEQGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--- 141 (250)
T ss_dssp TCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH---
T ss_pred CCCCCCCCcccHHHHHHhccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH---
Confidence 1 1111111 1112334555544322112235689999999998765
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.|++.++.. ..++++|++++...
T Consensus 142 -----------~~~~l~~~l~~~---------------------~~~~~~i~~t~~~~---------------------- 167 (250)
T 1njg_A 142 -----------SFNALLKTLEEP---------------------PEHVKFLLATTDPQ---------------------- 167 (250)
T ss_dssp -----------HHHHHHHHHHSC---------------------CTTEEEEEEESCGG----------------------
T ss_pred -----------HHHHHHHHHhcC---------------------CCceEEEEEeCChH----------------------
Confidence 889999999720 12466777766210
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+.+|+ .++.+++++.+++.+++...+. .. ...+
T Consensus 168 ----------------------------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~-----------~~--~~~~ 205 (250)
T 1njg_A 168 ----------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILN-----------EE--HIAH 205 (250)
T ss_dssp ----------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH-----------HT--TCCB
T ss_pred ----------------------------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHH-----------hc--CCCC
Confidence 1234566674 4899999999999988765221 12 4578
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENIL 603 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l 603 (684)
++++++.|++.+ +++.|.+.+++++++
T Consensus 206 ~~~~~~~l~~~~---~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 206 EPRALQLLARAA---EGSLRDALSLTDQAI 232 (250)
T ss_dssp CHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 999999999974 557899999988764
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.58 E-value=8.3e-15 Score=154.08 Aligned_cols=172 Identities=15% Similarity=0.246 Sum_probs=115.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
.+++|+||||||||++|+++++.+ +.+++.+++.++. ..+.+............ ....++||||||++.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA-QAMVEHLKKGTINEFRN------MYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH-HHHHHHHHHTCHHHHHH------HHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH-HHHHHHHHcCcHHHHHH------HhcCCCEEEEcCcccc
Confidence 689999999999999999999999 8899999988764 22222110000011110 0124689999999998
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
...+ ..++.|+.+++.. ...+..+|++++...
T Consensus 111 ~~~~------------~~~~~l~~~l~~~--------------------~~~~~~iii~~~~~~---------------- 142 (324)
T 1l8q_A 111 SGKE------------RTQIEFFHIFNTL--------------------YLLEKQIILASDRHP---------------- 142 (324)
T ss_dssp TTCH------------HHHHHHHHHHHHH--------------------HHTTCEEEEEESSCG----------------
T ss_pred cCCh------------HHHHHHHHHHHHH--------------------HHCCCeEEEEecCCh----------------
Confidence 7531 1677777777511 001123444444110
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc--eEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
.++ ..+.+.|++|++ .++.+++ +.+++.+|+...+.
T Consensus 143 ----------------------------~~l--~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~----------- 180 (324)
T 1l8q_A 143 ----------------------------QKL--DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK----------- 180 (324)
T ss_dssp ----------------------------GGC--TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH-----------
T ss_pred ----------------------------HHH--HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH-----------
Confidence 000 025577888986 6899999 99999998876321
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
.. .+.++++++++|+++. +++|+|.+++++++..
T Consensus 181 ~~--~~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 181 EF--NLELRKEVIDYLLENT----KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HT--TCCCCHHHHHHHHHHC----SSHHHHHHHHHHHHHH
T ss_pred hc--CCCCCHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 11 4678999999999973 7789999999988765
No 58
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1.5e-14 Score=150.26 Aligned_cols=186 Identities=24% Similarity=0.315 Sum_probs=128.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~- 356 (684)
.++||+++++.|...+... ...++||+||||||||++|+++++.+..
T Consensus 26 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTG--------------------------------SMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------------------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred HhhCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 3799999999999887521 0146999999999999999999998742
Q ss_pred ----CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHH
Q 005670 357 ----PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ----pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
.++.+++++..... .....+.......+ +..+.+.||+|||+|.+... .++.|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~ 133 (327)
T 1iqp_A 74 NWRHNFLELNASDERGIN----VIREKVKEFARTKP--IGGASFKIIFLDEADALTQD--------------AQQALRRT 133 (327)
T ss_dssp GHHHHEEEEETTCHHHHH----TTHHHHHHHHHSCC--GGGCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred cccCceEEeeccccCchH----HHHHHHHHHHhhCC--cCCCCCeEEEEeCCCcCCHH--------------HHHHHHHH
Confidence 47778876542100 11122222222211 22246789999999999776 89999999
Q ss_pred HcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhh
Q 005670 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~ 512 (684)
|+.. ..+++||++++...
T Consensus 134 le~~---------------------~~~~~~i~~~~~~~----------------------------------------- 151 (327)
T 1iqp_A 134 MEMF---------------------SSNVRFILSCNYSS----------------------------------------- 151 (327)
T ss_dssp HHHT---------------------TTTEEEEEEESCGG-----------------------------------------
T ss_pred HHhc---------------------CCCCeEEEEeCCcc-----------------------------------------
Confidence 9820 12466777766210
Q ss_pred ccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCH
Q 005670 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GA 592 (684)
.+.+.+.+|+. ++.|.+++.+++.+++...+ ... .+.++++++++|++.+ +++.
T Consensus 152 ---------~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~-----------~~~--~~~~~~~~~~~l~~~~---~g~~ 205 (327)
T 1iqp_A 152 ---------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIA-----------ENE--GLELTEEGLQAILYIA---EGDM 205 (327)
T ss_dssp ---------GSCHHHHHTEE-EEECCCCCHHHHHHHHHHHH-----------HTT--TCEECHHHHHHHHHHH---TTCH
T ss_pred ---------ccCHHHHhhCc-EEEecCCCHHHHHHHHHHHH-----------Hhc--CCCCCHHHHHHHHHHC---CCCH
Confidence 13466777876 78999999999988876521 112 4568999999999973 6678
Q ss_pred HHHHHHHHHHH
Q 005670 593 RGLRSLLENIL 603 (684)
Q Consensus 593 R~Lr~iIe~~l 603 (684)
|.+.++++...
T Consensus 206 r~~~~~l~~~~ 216 (327)
T 1iqp_A 206 RRAINILQAAA 216 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888654
No 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.56 E-value=8.1e-15 Score=151.72 Aligned_cols=186 Identities=23% Similarity=0.303 Sum_probs=130.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (684)
++|++++++.|...+... ...++||+||||||||++|+++++.+
T Consensus 19 ~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~ 66 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGEN 66 (319)
T ss_dssp SCSCHHHHHHHHTTTTTT--------------------------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHhCC--------------------------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc
Confidence 799999999887766310 01459999999999999999999987
Q ss_pred -CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHH
Q 005670 355 -NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (684)
Q Consensus 355 -~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~L 433 (684)
+.+++.+++++..... .....+.......+ +....+.||+|||+|.+... .++.|++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~l 126 (319)
T 2chq_A 67 WRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRTM 126 (319)
T ss_dssp HHHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTGGGT
T ss_pred ccCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHHHHH
Confidence 2358888887643111 11222333221211 11235789999999999776 788899999
Q ss_pred cCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhc
Q 005670 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (684)
Q Consensus 434 Eg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v 513 (684)
+. ...+++||+++|...
T Consensus 127 e~---------------------~~~~~~~i~~~~~~~------------------------------------------ 143 (319)
T 2chq_A 127 EM---------------------YSKSCRFILSCNYVS------------------------------------------ 143 (319)
T ss_dssp SS---------------------SSSSEEEEEEESCGG------------------------------------------
T ss_pred Hh---------------------cCCCCeEEEEeCChh------------------------------------------
Confidence 82 112467777766210
Q ss_pred cchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHH
Q 005670 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGAR 593 (684)
Q Consensus 514 ~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR 593 (684)
.+.|.+.+|+. ++.|.+++.+++.+++... +... .+.+++++++.|+.. ++++.|
T Consensus 144 --------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~-----------~~~~--~~~i~~~~l~~l~~~---~~G~~r 198 (319)
T 2chq_A 144 --------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEI-----------CEKE--GVKITEDGLEALIYI---SGGDFR 198 (319)
T ss_dssp --------GSCHHHHTTCE-EEECCCCCHHHHHHHHHHH-----------HHTT--CCCBCHHHHHHHHHT---TTTCHH
T ss_pred --------hcchHHHhhCe-EEEecCCCHHHHHHHHHHH-----------HHHc--CCCCCHHHHHHHHHH---cCCCHH
Confidence 24577888886 8999999999998887652 1112 456899999999974 467889
Q ss_pred HHHHHHHHHHH
Q 005670 594 GLRSLLENILM 604 (684)
Q Consensus 594 ~Lr~iIe~~l~ 604 (684)
.+.+.++.+..
T Consensus 199 ~~~~~l~~~~~ 209 (319)
T 2chq_A 199 KAINALQGAAA 209 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 60
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.55 E-value=1.3e-15 Score=142.60 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=73.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.++|++++++.+.+.+..... ...++||+||||||||++|+++++... +
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~------------------------------~~~~vll~G~~GtGKt~lA~~i~~~~~-~ 53 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK------------------------------RTSPVFLTGEAGSPFETVARYFHKNGT-P 53 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT------------------------------CSSCEEEEEETTCCHHHHHGGGCCTTS-C
T ss_pred CceeCCHHHHHHHHHHHHHhC------------------------------CCCcEEEECCCCccHHHHHHHHHHhCC-C
Confidence 379999999998888852100 126899999999999999999999988 9
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
|+.++|+++.. .+ ....+. .+.+++|||||||.+... .|+.|+++|+
T Consensus 54 ~~~~~~~~~~~-~~--------~~~~~~-------~a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~ 100 (143)
T 3co5_A 54 WVSPARVEYLI-DM--------PMELLQ-------KAEGGVLYVGDIAQYSRN--------------IQTGITFIIG 100 (143)
T ss_dssp EECCSSTTHHH-HC--------HHHHHH-------HTTTSEEEEEECTTCCHH--------------HHHHHHHHHH
T ss_pred eEEechhhCCh-Hh--------hhhHHH-------hCCCCeEEEeChHHCCHH--------------HHHHHHHHHH
Confidence 99999988752 11 222332 345689999999999876 8999999998
No 61
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.53 E-value=1.3e-13 Score=146.10 Aligned_cols=186 Identities=26% Similarity=0.298 Sum_probs=125.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.++|++++++.|..++.... .++.+||+||||||||++|+++|+.+++.
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~-------------------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR-------------------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC-------------------------------CCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred hccCcHHHHHHHHHHHHhCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37999999999998884110 02578999999999999999999998542
Q ss_pred ------------------------EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 358 ------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 358 ------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
++.++... ..+.+ .++.++...........+.||+|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~--- 134 (373)
T 1jr3_A 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTKVE---DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--- 134 (373)
T ss_dssp TCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCCSS---CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH---
T ss_pred CCCCCCCCcccHHHHHHhccCCCceEEecccc-----cCCHH---HHHHHHHHHhhccccCCeEEEEEECcchhcHH---
Confidence 22222211 11111 12333332211111234689999999999765
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
.++.|++.++. ...+++||++++...
T Consensus 135 -----------~~~~Ll~~le~---------------------~~~~~~~Il~~~~~~---------------------- 160 (373)
T 1jr3_A 135 -----------SFNALLKTLEE---------------------PPEHVKFLLATTDPQ---------------------- 160 (373)
T ss_dssp -----------HHHHHHHHHHS---------------------CCSSEEEEEEESCGG----------------------
T ss_pred -----------HHHHHHHHHhc---------------------CCCceEEEEEeCChH----------------------
Confidence 88999999982 112467777665110
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccc
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHF 573 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~ 573 (684)
.+.+.+.+|+ .++.|.+++.+++.+++...+.. . .+.+
T Consensus 161 ----------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~-----------~--~~~~ 198 (373)
T 1jr3_A 161 ----------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-----------E--HIAH 198 (373)
T ss_dssp ----------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-----------H--TCCB
T ss_pred ----------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH-----------c--CCCC
Confidence 1345566776 48999999999999888653211 1 4578
Q ss_pred cHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 574 TENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 574 s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
++++++.|++.+ +++.|.+.++++.++.
T Consensus 199 ~~~a~~~l~~~~---~G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 199 EPRALQLLARAA---EGSLRDALSLTDQAIA 226 (373)
T ss_dssp CHHHHHHHHHHS---SSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC---CCCHHHHHHHHHHHHH
Confidence 999999999973 5678999999988753
No 62
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=1.7e-14 Score=151.78 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=128.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.++|++++++.|..++... ...++||+||||||||++|+++|+.++
T Consensus 38 ~i~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~ 85 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSA--------------------------------NLPHMLFYGPPGTGKTSTILALTKELYGP 85 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCT--------------------------------TCCCEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcC--------------------------------CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4799999999888777310 014699999999999999999999874
Q ss_pred ----CCEEEEecccccccccccchhHHHHHHHHhcccc--------hHhhhcCcEEEEecccccccccccccCCCCCcch
Q 005670 356 ----VPFVIADATTLTQARYVGEDVESILYKLLTVSDY--------NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (684)
Q Consensus 356 ----~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~--------~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e 423 (684)
..++.+++++......+. ..+......... ........||||||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~------------- 148 (353)
T 1sxj_D 86 DLMKSRILELNASDERGISIVR----EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD------------- 148 (353)
T ss_dssp HHHTTSEEEECSSSCCCHHHHT----THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------
T ss_pred cccccceEEEccccccchHHHH----HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------
Confidence 358888887643111111 111111111000 000124569999999999876
Q ss_pred HHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchh
Q 005670 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (684)
Q Consensus 424 ~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~ 503 (684)
.++.|++.|+.. ..+..||+++|...
T Consensus 149 -~~~~Ll~~le~~---------------------~~~~~~il~~~~~~-------------------------------- 174 (353)
T 1sxj_D 149 -AQSALRRTMETY---------------------SGVTRFCLICNYVT-------------------------------- 174 (353)
T ss_dssp -HHHHHHHHHHHT---------------------TTTEEEEEEESCGG--------------------------------
T ss_pred -HHHHHHHHHHhc---------------------CCCceEEEEeCchh--------------------------------
Confidence 889999999821 12355666655211
Q ss_pred hhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHH
Q 005670 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAK 583 (684)
Q Consensus 504 ~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~ 583 (684)
.+.|.+.+|+. .+.|.+++.+++.+++...+ ... .+.++++++++|++
T Consensus 175 ------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~-----------~~~--~~~i~~~~l~~l~~ 222 (353)
T 1sxj_D 175 ------------------RIIDPLASQCS-KFRFKALDASNAIDRLRFIS-----------EQE--NVKCDDGVLERILD 222 (353)
T ss_dssp ------------------GSCHHHHHHSE-EEECCCCCHHHHHHHHHHHH-----------HTT--TCCCCHHHHHHHHH
T ss_pred ------------------hCcchhhccCc-eEEeCCCCHHHHHHHHHHHH-----------HHh--CCCCCHHHHHHHHH
Confidence 13466778886 78999999999988876521 112 45789999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHH
Q 005670 584 KAISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 584 ~a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
.+. ++.|.+.++++.....
T Consensus 223 ~~~---G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 223 ISA---GDLRRGITLLQSASKG 241 (353)
T ss_dssp HTS---SCHHHHHHHHHHTHHH
T ss_pred HcC---CCHHHHHHHHHHHHHh
Confidence 742 5689999999876654
No 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.1e-14 Score=148.13 Aligned_cols=223 Identities=14% Similarity=0.126 Sum_probs=141.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.+.|.++..+.|...+...... ..+.+++|+||||||||++++.+++.+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~----------------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS----------------------------SQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHhcC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3678888888888888633220 013799999999999999999999998
Q ss_pred -------CCCEEEEeccccccc---------ccccc-----hhHHHHHHHHhcccchHhhhcCcEEEEeccccccccccc
Q 005670 355 -------NVPFVIADATTLTQA---------RYVGE-----DVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (684)
Q Consensus 355 -------~~pfv~i~~s~l~~s---------~yvG~-----~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~ 413 (684)
...++.+||..+..+ .+.|. .....+...|..... ....+.||+|||+|.+. .
T Consensus 73 ~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~--- 146 (318)
T 3te6_A 73 SARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S--- 146 (318)
T ss_dssp TTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C---
T ss_pred hhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c---
Confidence 235889999876521 11121 113445555554211 12356899999999996 2
Q ss_pred ccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCccccc
Q 005670 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (684)
Q Consensus 414 ~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~ 493 (684)
+.++..|+++.+ .+.+++++|+.+|..++.
T Consensus 147 ---------q~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~-------------------- 176 (318)
T 3te6_A 147 ---------EKILQYFEKWIS---------------------SKNSKLSIICVGGHNVTI-------------------- 176 (318)
T ss_dssp ---------THHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCC--------------------
T ss_pred ---------chHHHHHHhccc---------------------ccCCcEEEEEEecCcccc--------------------
Confidence 114444444332 123458888888743210
Q ss_pred ccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc-eEEEccccCHHHHHHHHhchHHHHHHHH------------
Q 005670 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQY------------ 560 (684)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d-~iI~f~pLseeel~~Il~~~l~~L~kq~------------ 560 (684)
.+.+.+.+.+|+. .+|.|+||+.+++.+|++..+..+.+.+
T Consensus 177 --------------------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~ 230 (318)
T 3te6_A 177 --------------------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTI 230 (318)
T ss_dssp --------------------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEE
T ss_pred --------------------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccc
Confidence 0012345667776 5799999999999999987443321100
Q ss_pred --------HHHH--HhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 005670 561 --------RKMF--QMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEI 610 (684)
Q Consensus 561 --------~~~~--~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~ 610 (684)
.... ....+...++++|++.++++.....+++|-.-+++++++..+-.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~ 290 (318)
T 3te6_A 231 YNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDF 290 (318)
T ss_dssp CCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Confidence 0000 0001134689999999999765667889999999999888775543
No 64
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=9.9e-14 Score=143.77 Aligned_cols=185 Identities=17% Similarity=0.232 Sum_probs=128.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhC--
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~-- 355 (684)
.++|++++++.|...+... + ..++||+||||+|||++|+++++.+.
T Consensus 22 ~~~g~~~~~~~l~~~l~~~--------------------~------------~~~~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDG--------------------N------------MPHMIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSC--------------------C------------CCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHHCCHHHHHHHHHHHHcC--------------------C------------CCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 3789999999998887410 0 13599999999999999999999872
Q ss_pred ---CCEEEEecccccccccccchhHHHHHHHHhccc---chHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHH
Q 005670 356 ---VPFVIADATTLTQARYVGEDVESILYKLLTVSD---YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (684)
Q Consensus 356 ---~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~---~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~L 429 (684)
.+++.+++++.. + ...++..+.... .......+.||+|||+|.+... .++.|
T Consensus 70 ~~~~~~~~~~~~~~~-----~---~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L 127 (323)
T 1sxj_B 70 SYADGVLELNASDDR-----G---IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQAL 127 (323)
T ss_dssp GHHHHEEEECTTSCC-----S---HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHHTT
T ss_pred cccCCEEEecCcccc-----C---hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHHHH
Confidence 357888876532 1 122222222110 0011224689999999999776 78899
Q ss_pred HHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHH
Q 005670 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (684)
Q Consensus 430 L~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~L 509 (684)
++.++. ...+++||++++...
T Consensus 128 ~~~le~---------------------~~~~~~~il~~~~~~-------------------------------------- 148 (323)
T 1sxj_B 128 RRTMEL---------------------YSNSTRFAFACNQSN-------------------------------------- 148 (323)
T ss_dssp HHHHHH---------------------TTTTEEEEEEESCGG--------------------------------------
T ss_pred HHHHhc---------------------cCCCceEEEEeCChh--------------------------------------
Confidence 999982 012466777665210
Q ss_pred HhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCC
Q 005670 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKN 589 (684)
Q Consensus 510 l~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~ 589 (684)
.+.|.+.+|+. ++.|.+++.+++.+++...+.. . .+.+++++++.|++.+ +
T Consensus 149 ------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~~~~~~~l~~~~---~ 199 (323)
T 1sxj_B 149 ------------KIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKL-----------E--DVKYTNDGLEAIIFTA---E 199 (323)
T ss_dssp ------------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-----------H--TCCBCHHHHHHHHHHH---T
T ss_pred ------------hchhHHHhhce-EEeecCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---C
Confidence 23466777876 8999999999999988753211 1 4568999999999974 6
Q ss_pred CCHHHHHHHHHHHHH
Q 005670 590 TGARGLRSLLENILM 604 (684)
Q Consensus 590 ~GAR~Lr~iIe~~l~ 604 (684)
++.|.+.++++....
T Consensus 200 G~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 200 GDMRQAINNLQSTVA 214 (323)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 678999999887663
No 65
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=1.1e-13 Score=147.28 Aligned_cols=204 Identities=20% Similarity=0.214 Sum_probs=134.9
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (684)
+.++|+++.++.+...+..... . ..+.+++|+||||||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~------------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----N------------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----T------------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999988852211 0 012689999999999999999999988
Q ss_pred ---------CCCEEEEeccccc-cc----------------ccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccc
Q 005670 355 ---------NVPFVIADATTLT-QA----------------RYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 355 ---------~~pfv~i~~s~l~-~s----------------~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 408 (684)
+.+++.++|.... .. ...|......+..+..... ..+.||||||+|.+.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~vlilDEi~~l~ 146 (384)
T 2qby_B 72 VKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-----NIRAIIYLDEVDTLV 146 (384)
T ss_dssp HHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-----SSCEEEEEETTHHHH
T ss_pred HhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-----cCCCEEEEECHHHhc
Confidence 8899999987543 10 0112211222222222111 122399999999997
Q ss_pred cccccccCCCCCcchHHHHH-HHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 409 KKAESLNISRDVSGEGVQQA-LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 409 ~~r~~~~~~~d~~~e~vq~~-LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
... .++. |..+++- . .++.+|++++..++
T Consensus 147 ~~~-------------~~~~~l~~l~~~--------------------~--~~~~iI~~t~~~~~--------------- 176 (384)
T 2qby_B 147 KRR-------------GGDIVLYQLLRS--------------------D--ANISVIMISNDINV--------------- 176 (384)
T ss_dssp HST-------------TSHHHHHHHHTS--------------------S--SCEEEEEECSSTTT---------------
T ss_pred cCC-------------CCceeHHHHhcC--------------------C--cceEEEEEECCCch---------------
Confidence 541 1333 4444441 0 35788888772210
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhc
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~ 567 (684)
...+.+.+.+|+..++.|++++.+++.+|+...+. ..
T Consensus 177 --------------------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~-----------~~ 213 (384)
T 2qby_B 177 --------------------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE-----------YG 213 (384)
T ss_dssp --------------------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH-----------HT
T ss_pred --------------------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH-----------hh
Confidence 01245667788877999999999999999876321 00
Q ss_pred CccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 005670 568 GVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 568 gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~a 606 (684)
-....+++++++.+++.+....+++|.+.++++.++..+
T Consensus 214 ~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 214 LIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp SCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred cccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 013568999999999986555677999999988876544
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=4.8e-13 Score=142.20 Aligned_cols=211 Identities=16% Similarity=0.180 Sum_probs=137.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccc--eEEEEccCCCcHHHHHHHHHHHh-
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS--NILLMGPTGSGKTLLAKTLARYV- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~vLL~GPPGTGKT~LAraLA~~l- 354 (684)
.++|+++.++.|...+..... +. .+. +++|+||||||||++++++++.+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~----~~------------------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLR----NP------------------------GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHH----ST------------------------TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHc----CC------------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 479999999999988853211 00 013 89999999999999999999998
Q ss_pred ---CCCEEEEeccccccc-c--------------cccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccC
Q 005670 355 ---NVPFVIADATTLTQA-R--------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 355 ---~~pfv~i~~s~l~~s-~--------------yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~ 416 (684)
+.+++.++|...... . ..|......+..+.... .....+.||+|||++.+...
T Consensus 70 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l~~~------ 140 (389)
T 1fnn_A 70 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RERDLYMFLVLDDAFNLAPD------ 140 (389)
T ss_dssp TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGSCHH------
T ss_pred hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hhcCCeEEEEEECccccchH------
Confidence 567899998754310 0 01111111111111100 01124679999999999544
Q ss_pred CCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccc
Q 005670 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~ 496 (684)
.+..|+++++...- ....++.+|++++..++
T Consensus 141 --------~~~~L~~~~~~~~~-----------------~~~~~~~iI~~~~~~~~------------------------ 171 (389)
T 1fnn_A 141 --------ILSTFIRLGQEADK-----------------LGAFRIALVIVGHNDAV------------------------ 171 (389)
T ss_dssp --------HHHHHHHHTTCHHH-----------------HSSCCEEEEEEESSTHH------------------------
T ss_pred --------HHHHHHHHHHhCCC-----------------CCcCCEEEEEEECCchH------------------------
Confidence 88899999872100 00135777777663211
Q ss_pred cCCCchhhhhHHHHhhccchhhhhhcCccccccccce-EEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccH
Q 005670 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 497 ~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~ 575 (684)
. ..+.+.+.+|+.. ++.|+|++.+++.+++...+.. .+....+++
T Consensus 172 -------------~----------~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~-----------~~~~~~~~~ 217 (389)
T 1fnn_A 172 -------------L----------NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA-----------GLAEGSYSE 217 (389)
T ss_dssp -------------H----------HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHH-----------HBCTTSSCH
T ss_pred -------------H----------HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHh-----------hcCCCCCCH
Confidence 0 1134556677765 7999999999999988753211 011346899
Q ss_pred HHHHHHHHhcCCC------CCCHHHHHHHHHHHHHHHHh
Q 005670 576 NALRLIAKKAISK------NTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 576 eAl~~La~~a~~~------~~GAR~Lr~iIe~~l~~al~ 608 (684)
++++.+++.++.. ++++|.+.++++.++..+..
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999986544 67799999999988766543
No 67
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.51 E-value=9.4e-14 Score=147.11 Aligned_cols=213 Identities=19% Similarity=0.149 Sum_probs=136.0
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh--
Q 005670 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l-- 354 (684)
+.++|+++.++.+...+..... ...+.+++|+||||||||++|+++++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~----------------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR----------------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS----------------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc----------------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999998887741100 0113789999999999999999999998
Q ss_pred -------CCCEEEEecccccccc---------------cccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccc
Q 005670 355 -------NVPFVIADATTLTQAR---------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 355 -------~~pfv~i~~s~l~~s~---------------yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~ 412 (684)
+.+++.++|....... ..|......+..++.... ....+.||||||+|.+...+
T Consensus 71 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~- 146 (387)
T 2v1u_A 71 RASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRP- 146 (387)
T ss_dssp HHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHST-
T ss_pred HHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccC-
Confidence 7789999987643110 112222222333222211 01235699999999997541
Q ss_pred cccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEe-ccceEEEeccCcccHHHHHHhccccCCCCCCccc
Q 005670 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQID-TKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (684)
Q Consensus 413 ~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id-~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~ 491 (684)
. .++.|..+++... . .. ..++++|+++|..++
T Consensus 147 --------~---~~~~l~~l~~~~~-----~------------~~~~~~~~~I~~t~~~~~------------------- 179 (387)
T 2v1u_A 147 --------G---GQDLLYRITRINQ-----E------------LGDRVWVSLVGITNSLGF------------------- 179 (387)
T ss_dssp --------T---HHHHHHHHHHGGG-----C------------C-----CEEEEECSCSTT-------------------
T ss_pred --------C---CChHHHhHhhchh-----h------------cCCCceEEEEEEECCCch-------------------
Confidence 0 2344444443100 0 00 235777888773210
Q ss_pred ccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccce-EEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCcc
Q 005670 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV-LVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVK 570 (684)
Q Consensus 492 ~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~-iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~ 570 (684)
...+.+.+.+|+.. ++.|++++.+++.+|+...+.. ....
T Consensus 180 ----------------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~-----------~~~~ 220 (387)
T 2v1u_A 180 ----------------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE-----------AFNP 220 (387)
T ss_dssp ----------------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH-----------HBCT
T ss_pred ----------------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh-----------hccC
Confidence 01245677888875 8999999999999998763211 0114
Q ss_pred ccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 005670 571 LHFTENALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 571 l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
..+++++++.+++++....+++|.+.++++.++..+.
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 5689999999999866556789999999998876554
No 68
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.51 E-value=1.9e-13 Score=135.08 Aligned_cols=169 Identities=19% Similarity=0.255 Sum_probs=115.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
.+++|+||||||||++|+++++.+. .+++.+++.++.. .+. . .+.. ...+.+|+|||++.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~-----~----~~~~------~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS-IST-----A----LLEG------LEQFDLICIDDVDAV 116 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG-SCG-----G----GGTT------GGGSSEEEEETGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH-HHH-----H----HHHh------ccCCCEEEEeccccc
Confidence 7899999999999999999999884 6788888877652 110 0 1111 135689999999998
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
.... ..++.|+.+++.. .+...+.+|++++... ..
T Consensus 117 ~~~~------------~~~~~l~~~l~~~-------------------~~~~~~~ii~~~~~~~-----------~~--- 151 (242)
T 3bos_A 117 AGHP------------LWEEAIFDLYNRV-------------------AEQKRGSLIVSASASP-----------ME--- 151 (242)
T ss_dssp TTCH------------HHHHHHHHHHHHH-------------------HHHCSCEEEEEESSCT-----------TT---
T ss_pred cCCH------------HHHHHHHHHHHHH-------------------HHcCCCeEEEEcCCCH-----------HH---
Confidence 7641 1377788887621 0111232455554210 00
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc--eEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
. ..+.+.+.+|+. .++.|++++.+++.+++...+.
T Consensus 152 -------------------------~-------~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~----------- 188 (242)
T 3bos_A 152 -------------------------A-------GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA----------- 188 (242)
T ss_dssp -------------------------T-------TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH-----------
T ss_pred -------------------------H-------HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH-----------
Confidence 0 012356777875 7899999999999998865321
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
.. .+.++++++++|++. .+++.|.|.+++++++..+..
T Consensus 189 ~~--~~~~~~~~~~~l~~~---~~g~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 189 MR--GLQLPEDVGRFLLNR---MARDLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp HT--TCCCCHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHH
T ss_pred Hc--CCCCCHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHH
Confidence 12 457899999999996 366899999999998877643
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.51 E-value=1.3e-12 Score=138.92 Aligned_cols=205 Identities=24% Similarity=0.354 Sum_probs=131.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
++||+.+++.|...+.....+ . .++.+++|+||||+|||++|+++|..++.++
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~-------~--------------------~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMR-------G--------------------EVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH-------T--------------------CCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred ccCcHHHHHHHHHHHHHHHhc-------C--------------------CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 589999999988877522111 0 0136899999999999999999999999988
Q ss_pred EEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCcee
Q 005670 359 VIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (684)
Q Consensus 359 v~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v 438 (684)
...++..+.. ...+...+... ....|+||||++.+.+. +++.|+..++....
T Consensus 80 ~~~sg~~~~~--------~~~l~~~~~~~------~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~~~~~ 131 (334)
T 1in4_A 80 HVTSGPVLVK--------QGDMAAILTSL------ERGDVLFIDEIHRLNKA--------------VEELLYSAIEDFQI 131 (334)
T ss_dssp EEEETTTCCS--------HHHHHHHHHHC------CTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCC
T ss_pred EEEechHhcC--------HHHHHHHHHHc------cCCCEEEEcchhhcCHH--------------HHHHHHHHHHhccc
Confidence 7666544321 12222222211 24579999999999764 78888888863211
Q ss_pred eccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhh
Q 005670 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDL 518 (684)
Q Consensus 439 ~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dl 518 (684)
.+-. + .....+.+......+.++.+++..
T Consensus 132 ~i~~-~--~~~~~~~i~~~l~~~~li~at~~~------------------------------------------------ 160 (334)
T 1in4_A 132 DIMI-G--KGPSAKSIRIDIQPFTLVGATTRS------------------------------------------------ 160 (334)
T ss_dssp CC------------------CCCEEEEEESCG------------------------------------------------
T ss_pred ceee-c--cCcccccccccCCCeEEEEecCCc------------------------------------------------
Confidence 1000 0 000001111222334444433210
Q ss_pred hhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHH
Q 005670 519 IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSL 598 (684)
Q Consensus 519 l~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~i 598 (684)
..+.+.+++|+...+.|++++.+++.+|+++.... ..+.++++++++|++.+ .+++|.+.++
T Consensus 161 --~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-------------~~~~~~~~~~~~ia~~~---~G~~R~a~~l 222 (334)
T 1in4_A 161 --GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-------------MDVEIEDAAAEMIAKRS---RGTPRIAIRL 222 (334)
T ss_dssp --GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------------TTCCBCHHHHHHHHHTS---TTCHHHHHHH
T ss_pred --ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-------------cCCCcCHHHHHHHHHhc---CCChHHHHHH
Confidence 12567788999988999999999999998763211 14678999999999963 4668999999
Q ss_pred HHHHHHHHH
Q 005670 599 LENILMDAM 607 (684)
Q Consensus 599 Ie~~l~~al 607 (684)
++++...+.
T Consensus 223 l~~~~~~a~ 231 (334)
T 1in4_A 223 TKRVRDMLT 231 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988766554
No 70
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.51 E-value=9.8e-14 Score=159.01 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=91.2
Q ss_pred cchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCC---CCCeEEEeccceEEE
Q 005670 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP---RGDNIQIDTKDILFI 464 (684)
Q Consensus 388 ~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~---~g~~i~id~~niIfI 464 (684)
.+.+..+.+++|||||++.+.+. +|+.|+++|+...+.+......... ....+ ..++.+|
T Consensus 194 ~g~~~~a~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~---p~~~~vI 256 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV---PCDFVLV 256 (604)
T ss_dssp CCHHHHTTTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE---ECCCEEE
T ss_pred CceeeecCCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCcc---ceeEEEE
Confidence 34456778899999999999876 9999999998555543211100000 01111 2357788
Q ss_pred eccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc---eEEEccccC
Q 005670 465 CGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP---VLVSLLALT 541 (684)
Q Consensus 465 ~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d---~iI~f~pLs 541 (684)
+++|.. ....|+|+|++||+ ..+.|++..
T Consensus 257 ~atn~~------------------------------------------------~~~~l~~~l~~R~~v~~i~i~l~~~~ 288 (604)
T 3k1j_A 257 AAGNLD------------------------------------------------TVDKMHPALRSRIRGYGYEVYMRTTM 288 (604)
T ss_dssp EEECHH------------------------------------------------HHHHSCHHHHHHHHHHSEEEECCSEE
T ss_pred EecCHH------------------------------------------------HHhhcCHHHHHHhhccceEeeccccc
Confidence 888721 01136799999997 567776554
Q ss_pred H---HHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCC-------CHHHHHHHHHHHHHHH
Q 005670 542 E---NQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT-------GARGLRSLLENILMDA 606 (684)
Q Consensus 542 e---eel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~-------GAR~Lr~iIe~~l~~a 606 (684)
+ +.+..++.. +.+++ ...+....+++++++.|+++.+.+.. ..|+|.++++.+..-+
T Consensus 289 ~~~~~~~~~~l~~----~~~~~----~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A 355 (604)
T 3k1j_A 289 PDTIENRRKLVQF----VAQEV----KRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIA 355 (604)
T ss_dssp ECCHHHHHHHHHH----HHHHH----HHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH----HHHHH----hhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHH
Confidence 3 334444432 32222 22234568999999999998653333 5899999998765433
No 71
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=5e-13 Score=150.31 Aligned_cols=211 Identities=18% Similarity=0.206 Sum_probs=128.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.++|++++++.|...+.........+.+. .+... ..++.++||+||||||||++|+++|+.++.+
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~---~g~~~------------~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKH---AGKDG------------SGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCC---CCTTS------------TTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccc---cCccC------------CCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 37999999999999986422211011110 00000 0123799999999999999999999999999
Q ss_pred EEEEecccccccccccch-hHH-----HHHHHHhccc-chHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHH
Q 005670 358 FVIADATTLTQARYVGED-VES-----ILYKLLTVSD-YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~-~~~-----~l~~l~~~a~-~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL 430 (684)
++.++++++.. ...... ... .+...+..+. .......++||||||+|.+.... +...+.|+
T Consensus 105 ~i~in~s~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~ 172 (516)
T 1sxj_A 105 ILEQNASDVRS-KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLA 172 (516)
T ss_dssp EEEECTTSCCC-HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHH
T ss_pred EEEEeCCCcch-HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHH
Confidence 99999988752 111100 000 0001111100 00012467899999999997641 11567788
Q ss_pred HHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHH
Q 005670 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (684)
Q Consensus 431 ~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll 510 (684)
++++.. ...+++|++....
T Consensus 173 ~~l~~~---------------------~~~iIli~~~~~~---------------------------------------- 191 (516)
T 1sxj_A 173 QFCRKT---------------------STPLILICNERNL---------------------------------------- 191 (516)
T ss_dssp HHHHHC---------------------SSCEEEEESCTTS----------------------------------------
T ss_pred HHHHhc---------------------CCCEEEEEcCCCC----------------------------------------
Confidence 888710 0113444332100
Q ss_pred hhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCC
Q 005670 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNT 590 (684)
Q Consensus 511 ~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~ 590 (684)
...+++. |....+.|.+++.+++.+++...+.. . .+.+++++++.|++.+ ++
T Consensus 192 -----------~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i~~~-----------~--~~~i~~~~l~~la~~s---~G 243 (516)
T 1sxj_A 192 -----------PKMRPFD-RVCLDIQFRRPDANSIKSRLMTIAIR-----------E--KFKLDPNVIDRLIQTT---RG 243 (516)
T ss_dssp -----------STTGGGT-TTSEEEECCCCCHHHHHHHHHHHHHH-----------H--TCCCCTTHHHHHHHHT---TT
T ss_pred -----------ccchhhH-hceEEEEeCCCCHHHHHHHHHHHHHH-----------c--CCCCCHHHHHHHHHHc---CC
Confidence 0012343 44458999999999999887652211 1 4568999999999873 56
Q ss_pred CHHHHHHHHHHHHH
Q 005670 591 GARGLRSLLENILM 604 (684)
Q Consensus 591 GAR~Lr~iIe~~l~ 604 (684)
+.|.+.++++.+..
T Consensus 244 diR~~i~~L~~~~~ 257 (516)
T 1sxj_A 244 DIRQVINLLSTIST 257 (516)
T ss_dssp CHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 68999999887643
No 72
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.49 E-value=1.7e-13 Score=151.46 Aligned_cols=175 Identities=18% Similarity=0.259 Sum_probs=116.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccccccccchhHHHHHHHHhcccchHh--hh-cCcEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVA--AA-QQGIVYID 402 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~--~a-~~gILfID 402 (684)
.+++|+||||||||+||+++++.+ +.+++.+++.++. ..+.+ .+.......+. .. .+.|||||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~vL~ID 201 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVD--------SMKEGKLNEFREKYRKKVDILLID 201 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH-HHHHH--------HHHTTCHHHHHHHHTTTCSEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHH--------HHHcccHHHHHHHhcCCCCEEEEe
Confidence 689999999999999999999998 7889999987764 11111 11110000011 12 56899999
Q ss_pred cccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcccc
Q 005670 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (684)
Q Consensus 403 EIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~ 482 (684)
|++.+.... ..++.|+..++... + .+..+|++++...
T Consensus 202 Ei~~l~~~~------------~~q~~l~~~l~~l~-------------------~-~~~~iIitt~~~~----------- 238 (440)
T 2z4s_A 202 DVQFLIGKT------------GVQTELFHTFNELH-------------------D-SGKQIVICSDREP----------- 238 (440)
T ss_dssp CGGGGSSCH------------HHHHHHHHHHHHHH-------------------T-TTCEEEEEESSCG-----------
T ss_pred CcccccCCh------------HHHHHHHHHHHHHH-------------------H-CCCeEEEEECCCH-----------
Confidence 999987531 16777888876210 0 1123344444110
Q ss_pred CCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccc--eEEEccccCHHHHHHHHhchHHHHHHHH
Q 005670 483 SSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP--VLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 483 ~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d--~iI~f~pLseeel~~Il~~~l~~L~kq~ 560 (684)
. ++ ..+.+.+++|+. .++.+.+++.+++.+|+...+..
T Consensus 239 --------------------~-------------~l--~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~----- 278 (440)
T 2z4s_A 239 --------------------Q-------------KL--SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI----- 278 (440)
T ss_dssp --------------------G-------------GC--SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH-----
T ss_pred --------------------H-------------HH--HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH-----
Confidence 0 00 024567778885 68999999999999988763221
Q ss_pred HHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Q 005670 561 RKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMY 608 (684)
Q Consensus 561 ~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~ 608 (684)
. .+.++++++++|+.. .++++|.|.+++++++..+..
T Consensus 279 ------~--~~~i~~e~l~~la~~---~~gn~R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 279 ------E--HGELPEEVLNFVAEN---VDDNLRRLRGAIIKLLVYKET 315 (440)
T ss_dssp ------H--TCCCCTTHHHHHHHH---CCSCHHHHHHHHHHHHHHHHH
T ss_pred ------c--CCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence 1 467899999999986 357899999999998876643
No 73
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.49 E-value=4.7e-14 Score=133.47 Aligned_cols=161 Identities=20% Similarity=0.247 Sum_probs=105.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|+++.++.+...+.. ..+.+++|+||||||||++|+++++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 70 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR--------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIING 70 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHhc--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 479999999988887731 012689999999999999999999997
Q ss_pred -------CCCEEEEecccccc-cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 355 -------NVPFVIADATTLTQ-ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~i~~s~l~~-s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
+.+++.+++..+.. ..+.|.. ...+..++.... ....+.||+|||+|.+...+.. .....++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~------~~~~~~~ 140 (195)
T 1jbk_A 71 EVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA------DGAMDAG 140 (195)
T ss_dssp CSCGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHH---HSTTTEEEEEETGGGGTT------------CCCCH
T ss_pred CCchhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCcc------cchHHHH
Confidence 67888888876642 2333332 344445444221 1124569999999999754211 0111267
Q ss_pred HHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhh
Q 005670 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~ 506 (684)
+.|..+++. .++.+|++++..++...
T Consensus 141 ~~l~~~~~~-----------------------~~~~~i~~~~~~~~~~~------------------------------- 166 (195)
T 1jbk_A 141 NMLKPALAR-----------------------GELHCVGATTLDEYRQY------------------------------- 166 (195)
T ss_dssp HHHHHHHHT-----------------------TSCCEEEEECHHHHHHH-------------------------------
T ss_pred HHHHHhhcc-----------------------CCeEEEEeCCHHHHHHH-------------------------------
Confidence 777777761 13566777662211100
Q ss_pred HHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHH
Q 005670 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVL 549 (684)
Q Consensus 507 ~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il 549 (684)
..+.+.+++|++ .+.+.+++.+++.+|+
T Consensus 167 --------------~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 --------------IEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --------------TTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred --------------HhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 013577888998 6899999999988775
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.47 E-value=1.8e-13 Score=161.76 Aligned_cols=218 Identities=21% Similarity=0.294 Sum_probs=146.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.|+|++++++.|.+.+..+......... . . ..++.++||+||||||||++|+++|..++.+
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~----l---~------------i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKA----I---G------------VKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTS----S---C------------CCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHh----c---C------------CCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 4899999999999999754332110000 0 0 1124789999999999999999999999999
Q ss_pred EEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCce
Q 005670 358 FVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (684)
Q Consensus 358 fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~ 437 (684)
|+.+++.++. ..+.|.. +..++.+|+.+. ...++++||||||.+...++. ........+++.|+.+|+|..
T Consensus 266 ~i~v~~~~l~-~~~~g~~-~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp EEEEEHHHHS-SSSTTHH-HHHHHHHHHHHH----HHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSC
T ss_pred EEEEEchHhh-hhhhhhH-HHHHHHHHHHHH----hcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhc
Confidence 9999999887 5777765 667777777653 346799999999999876432 122233558889999998521
Q ss_pred eeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchh
Q 005670 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSD 517 (684)
Q Consensus 438 v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~d 517 (684)
. ..++++|+++|..+
T Consensus 337 ~-------------------~~~v~vI~atn~~~---------------------------------------------- 351 (806)
T 1ypw_A 337 Q-------------------RAHVIVMAATNRPN---------------------------------------------- 351 (806)
T ss_dssp T-------------------TSCCEEEEECSCTT----------------------------------------------
T ss_pred c-------------------cccEEEecccCCch----------------------------------------------
Confidence 1 12477788877321
Q ss_pred hhhhcCccccc--cccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHH
Q 005670 518 LIAYGLIPEFV--GRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGL 595 (684)
Q Consensus 518 ll~~~f~PeLl--~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~L 595 (684)
.+.|.+. +||+..+.+..++.++..+|++..+. .+.+ ..+..+..++.. ..++..+.+
T Consensus 352 ----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~-------------~~~l-~~~~~l~~la~~--t~g~~g~dl 411 (806)
T 1ypw_A 352 ----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK-------------NMKL-ADDVDLEQVANE--THGHVGADL 411 (806)
T ss_dssp ----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT-------------TSCC-CTTCCTHHHHHS--CSSCCHHHH
T ss_pred ----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHh-------------cCCC-cccchhHHHHHh--hcCcchHHH
Confidence 1224444 48998999999999999888864211 1111 122234556653 445556777
Q ss_pred HHHHHHHHHHHHh
Q 005670 596 RSLLENILMDAMY 608 (684)
Q Consensus 596 r~iIe~~l~~al~ 608 (684)
..++......++.
T Consensus 412 ~~l~~ea~~~a~r 424 (806)
T 1ypw_A 412 AALCSEAALQAIR 424 (806)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777666655543
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=6.5e-13 Score=140.40 Aligned_cols=186 Identities=21% Similarity=0.309 Sum_probs=120.3
Q ss_pred ccChHHHHHHHHHHH-HhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 279 VIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 279 VvGQe~ak~~L~~aV-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
++||+++++.|..++ .. .+ ..+++|+||+|+|||++++++++.+..+
T Consensus 16 ~vg~~~~~~~l~~~~~~~--------------------~~------------~~~~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 16 LSHNEELTNFLKSLSDQP--------------------RD------------LPHLLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp CCSCHHHHHHHHTTTTCT--------------------TC------------CCCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred hcCCHHHHHHHHHHHhhC--------------------CC------------CCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 789999998877665 20 00 1349999999999999999999965211
Q ss_pred -----------------------------EEEEecccccccccccchhHHHHHHHHhcccc--hHh--------hhcCcE
Q 005670 358 -----------------------------FVIADATTLTQARYVGEDVESILYKLLTVSDY--NVA--------AAQQGI 398 (684)
Q Consensus 358 -----------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~--~v~--------~a~~gI 398 (684)
++.++.+.. +......+++.+..... .+. ...+.|
T Consensus 64 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~v 137 (354)
T 1sxj_E 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM------GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKC 137 (354)
T ss_dssp TCCC------------------CCEECSSEEEECCC----------CCHHHHHHHHHHHTTTTC------------CCEE
T ss_pred CCCeEEecceeecccccccceeeeecccceEEecHhhc------CCcchHHHHHHHHHHHHhccccccccccccCCCCeE
Confidence 222222111 11101123333322110 010 235679
Q ss_pred EEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHh
Q 005670 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (684)
Q Consensus 399 LfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~ 478 (684)
|+|||++.+... .++.|++.|+.. ..++.||++++..+
T Consensus 138 lilDE~~~L~~~--------------~~~~L~~~le~~---------------------~~~~~~Il~t~~~~------- 175 (354)
T 1sxj_E 138 VIINEANSLTKD--------------AQAALRRTMEKY---------------------SKNIRLIMVCDSMS------- 175 (354)
T ss_dssp EEEECTTSSCHH--------------HHHHHHHHHHHS---------------------TTTEEEEEEESCSC-------
T ss_pred EEEeCccccCHH--------------HHHHHHHHHHhh---------------------cCCCEEEEEeCCHH-------
Confidence 999999998765 899999999820 12356666665211
Q ss_pred ccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHH
Q 005670 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (684)
Q Consensus 479 r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~k 558 (684)
.+.|.+.+|+ .++.|.+++.+++.+++...+..
T Consensus 176 -------------------------------------------~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~--- 208 (354)
T 1sxj_E 176 -------------------------------------------PIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTN--- 208 (354)
T ss_dssp -------------------------------------------SSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH---
T ss_pred -------------------------------------------HHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHH---
Confidence 1346678888 58999999999999988763211
Q ss_pred HHHHHHHhcCcccccc-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 559 QYRKMFQMNGVKLHFT-ENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 559 q~~~~~~~~gi~l~~s-~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
. .+.++ +++++.|++.+ +++.|.+.++++.+..
T Consensus 209 --------~--~~~~~~~~~l~~i~~~~---~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 209 --------E--RIQLETKDILKRIAQAS---NGNLRVSLLMLESMAL 242 (354)
T ss_dssp --------H--TCEECCSHHHHHHHHHH---TTCHHHHHHHHTHHHH
T ss_pred --------c--CCCCCcHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 1 45688 99999999874 6678999999997664
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=5.3e-13 Score=141.49 Aligned_cols=183 Identities=21% Similarity=0.305 Sum_probs=122.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCC--
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~-- 356 (684)
++||+++++.|...+... ...+++|+||||||||++|+++|+.+..
T Consensus 27 ~~g~~~~~~~L~~~i~~g--------------------------------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEG--------------------------------KLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 689999999998888511 0135999999999999999999999743
Q ss_pred ---CEEEEecccccccccccch-hHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHH
Q 005670 357 ---PFVIADATTLTQARYVGED-VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (684)
Q Consensus 357 ---pfv~i~~s~l~~s~yvG~~-~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~ 432 (684)
.+..+++++.. |.+ ....+......... ......|++|||+|.+... .++.|++.
T Consensus 75 ~~~~~~~~~~~~~~-----~~~~ir~~i~~~~~~~~~--~~~~~~viiiDe~~~l~~~--------------~~~~L~~~ 133 (340)
T 1sxj_C 75 YSNMVLELNASDDR-----GIDVVRNQIKDFASTRQI--FSKGFKLIILDEADAMTNA--------------AQNALRRV 133 (340)
T ss_dssp HHHHEEEECTTSCC-----SHHHHHTHHHHHHHBCCS--SSCSCEEEEETTGGGSCHH--------------HHHHHHHH
T ss_pred ccceEEEEcCcccc-----cHHHHHHHHHHHHhhccc--CCCCceEEEEeCCCCCCHH--------------HHHHHHHH
Confidence 26666665432 211 11112222211100 0123689999999999765 89999999
Q ss_pred HcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhh
Q 005670 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (684)
Q Consensus 433 LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~ 512 (684)
||.. ..++.||+++|..
T Consensus 134 le~~---------------------~~~~~~il~~n~~------------------------------------------ 150 (340)
T 1sxj_C 134 IERY---------------------TKNTRFCVLANYA------------------------------------------ 150 (340)
T ss_dssp HHHT---------------------TTTEEEEEEESCG------------------------------------------
T ss_pred HhcC---------------------CCCeEEEEEecCc------------------------------------------
Confidence 9820 1235566666621
Q ss_pred ccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCH
Q 005670 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGA 592 (684)
Q Consensus 513 v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GA 592 (684)
..+.|.+.+|+. ++.|.+++.+++.+++... +... .+.+++++++.++..+ ++..
T Consensus 151 --------~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~-----------~~~~--~~~i~~~~~~~i~~~s---~G~~ 205 (340)
T 1sxj_C 151 --------HKLTPALLSQCT-RFRFQPLPQEAIERRIANV-----------LVHE--KLKLSPNAEKALIELS---NGDM 205 (340)
T ss_dssp --------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHH-----------HHTT--TCCBCHHHHHHHHHHH---TTCH
T ss_pred --------cccchhHHhhce-eEeccCCCHHHHHHHHHHH-----------HHHc--CCCCCHHHHHHHHHHc---CCCH
Confidence 024577888886 7899999999988877642 1112 4568999999999974 4556
Q ss_pred HHHHHHHHHH
Q 005670 593 RGLRSLLENI 602 (684)
Q Consensus 593 R~Lr~iIe~~ 602 (684)
|.+.++++.+
T Consensus 206 r~~~~~l~~~ 215 (340)
T 1sxj_C 206 RRVLNVLQSC 215 (340)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 7666666543
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.44 E-value=1.1e-12 Score=155.80 Aligned_cols=207 Identities=19% Similarity=0.253 Sum_probs=121.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh----
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---- 354 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l---- 354 (684)
|+|+++.++.+...+... .+.++||+||||||||++|+++|+.+
T Consensus 172 viGr~~~i~~l~~~l~~~--------------------------------~~~~vlL~G~pG~GKT~la~~la~~l~~~~ 219 (854)
T 1qvr_A 172 VIGRDEEIRRVIQILLRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGD 219 (854)
T ss_dssp CCSCHHHHHHHHHHHHCS--------------------------------SCCCCEEEECTTSCHHHHHHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHhcC--------------------------------CCCceEEEcCCCCCHHHHHHHHHHHHhcCC
Confidence 799999999988877411 12689999999999999999999998
Q ss_pred ------CCCEEEEecccccc-cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHH
Q 005670 355 ------NVPFVIADATTLTQ-ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 355 ------~~pfv~i~~s~l~~-s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~ 427 (684)
+.+++.++++.+.. ..|.|.. +..+..++..... ...++||||||+|.+...... .....+++
T Consensus 220 ~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~------~g~~~~~~ 289 (854)
T 1qvr_A 220 VPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQ---SQGEVILFIDELHTVVGAGKA------EGAVDAGN 289 (854)
T ss_dssp SCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHT---TCSSEEEEECCC-----------------------
T ss_pred CchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHh---cCCCeEEEEecHHHHhccCCc------cchHHHHH
Confidence 77899999988762 4566754 5566666654321 124679999999999764221 11123777
Q ss_pred HHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhH
Q 005670 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~ 507 (684)
.|+.+++. ..+.+|+++|.....+
T Consensus 290 ~L~~~l~~-----------------------~~i~~I~at~~~~~~~--------------------------------- 313 (854)
T 1qvr_A 290 MLKPALAR-----------------------GELRLIGATTLDEYRE--------------------------------- 313 (854)
T ss_dssp --HHHHHT-----------------------TCCCEEEEECHHHHHH---------------------------------
T ss_pred HHHHHHhC-----------------------CCeEEEEecCchHHhh---------------------------------
Confidence 88888871 1255666666221100
Q ss_pred HHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcC-
Q 005670 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI- 586 (684)
Q Consensus 508 ~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~- 586 (684)
....|.|.+||+. |.+++++.++..+|++. +..+|.. ...+.++++++..+++.+.
T Consensus 314 -------------~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~----~~~~~~~-----~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 314 -------------IEKDPALERRFQP-VYVDEPTVEETISILRG----LKEKYEV-----HHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp -------------HTTCTTTCSCCCC-EEECCCCHHHHHHHHHH----HHHHHHH-----HTTCEECHHHHHHHHHHHHH
T ss_pred -------------hccCHHHHhCCce-EEeCCCCHHHHHHHHHh----hhhhhhh-----hcCCCCCHHHHHHHHHHHhh
Confidence 1245789999985 89999999999999975 3333332 1256788999998887641
Q ss_pred --CCCCCHHHHHHHHHHHHHHH
Q 005670 587 --SKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 587 --~~~~GAR~Lr~iIe~~l~~a 606 (684)
...+-.+....++.......
T Consensus 371 ~i~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 371 YITERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp HCCSSCTHHHHHHHHHHHHHHH
T ss_pred hcccccChHHHHHHHHHHHHHH
Confidence 22222344444444444433
No 78
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.41 E-value=8.1e-13 Score=147.02 Aligned_cols=170 Identities=23% Similarity=0.315 Sum_probs=105.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.|+|+++.++.+...+.+. .+.++||+||||||||++|+++|+.+
T Consensus 181 ~iiGr~~~i~~l~~~l~r~--------------------------------~~~~~LL~G~pG~GKT~la~~la~~l~~~ 228 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR--------------------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS--------------------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred CccCcHHHHHHHHHHHhcc--------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3899999999998887510 12689999999999999999999997
Q ss_pred -------CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHH
Q 005670 355 -------NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 355 -------~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~ 427 (684)
+.+|+.++++ ..|.|.. +..+..++.... ...++||||| ... + +++
T Consensus 229 ~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~----~~~~~iLfiD----~~~---------~-----a~~ 281 (468)
T 3pxg_A 229 EVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI---------D-----ASN 281 (468)
T ss_dssp CSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C--------------------
T ss_pred CCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHH----hcCCeEEEEe----Cch---------h-----HHH
Confidence 6789988887 3556653 334555554432 2367899999 111 1 778
Q ss_pred HHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhH
Q 005670 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~ 507 (684)
.|++.|+. .++.+|+++|..+..+.+
T Consensus 282 ~L~~~L~~-----------------------g~v~vI~at~~~e~~~~~------------------------------- 307 (468)
T 3pxg_A 282 ILKPSLAR-----------------------GELQCIGATTLDEYRKYI------------------------------- 307 (468)
T ss_dssp --CCCTTS-----------------------SSCEEEEECCTTTTHHHH-------------------------------
T ss_pred HHHHhhcC-----------------------CCEEEEecCCHHHHHHHh-------------------------------
Confidence 88888861 136778887743211111
Q ss_pred HHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHh
Q 005670 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 508 ~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~ 584 (684)
.+.|.|.+||. +|.|++++.+++.+|++..+. +|.. ...+.+++++++.++..
T Consensus 308 --------------~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~----~~~~-----~~~~~i~~~al~~l~~~ 360 (468)
T 3pxg_A 308 --------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLRD----RYEA-----HHRVSITDDAIEAAVKL 360 (468)
T ss_dssp --------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTT----TSGG-----GSSCSCCHHHHHHHHHH
T ss_pred --------------hcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHH----HHHH-----hcCCCCCHHHHHHHHHH
Confidence 24578889998 599999999999999875321 1111 12345666666666654
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.41 E-value=2e-12 Score=151.46 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=135.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.|+|+++.++.+...+... .+.++||+||||||||++|+++|+.+
T Consensus 187 ~~iGr~~~i~~l~~~l~~~--------------------------------~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSS--------------------------------SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CccCCHHHHHHHHHHHhcc--------------------------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 4799999999988877410 13789999999999999999999987
Q ss_pred -------CCCEEEEecccccc-cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 355 -------NVPFVIADATTLTQ-ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~i~~s~l~~-s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
+..++.+++..+.. ..|.|.. +..+..++.... .+.++||||||+|.+...... +.....++
T Consensus 235 ~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~----~~~~~iL~IDEi~~l~~~~~~-----~~~~~~~~ 304 (758)
T 1r6b_X 235 DVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAA-----SGGQVDAA 304 (758)
T ss_dssp CSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHS----SSSCEEEEETTTTTTTTSCCS-----SSCHHHHH
T ss_pred CCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHH----hcCCeEEEEechHHHhhcCCC-----CcchHHHH
Confidence 55688888877662 4567754 666777776543 235799999999999764211 11122355
Q ss_pred HHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhh
Q 005670 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (684)
Q Consensus 427 ~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~ 506 (684)
+.|..+++. .++.+|++++..+
T Consensus 305 ~~L~~~l~~-----------------------~~~~~I~at~~~~----------------------------------- 326 (758)
T 1r6b_X 305 NLIKPLLSS-----------------------GKIRVIGSTTYQE----------------------------------- 326 (758)
T ss_dssp HHHSSCSSS-----------------------CCCEEEEEECHHH-----------------------------------
T ss_pred HHHHHHHhC-----------------------CCeEEEEEeCchH-----------------------------------
Confidence 555555541 1366777766221
Q ss_pred HHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcC
Q 005670 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAI 586 (684)
Q Consensus 507 ~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~ 586 (684)
+...+ ...|.|.+||+ ++.+++++.++..+|+.. +.++|... ..+.+++++++.++..+.
T Consensus 327 --~~~~~--------~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~----l~~~~~~~-----~~v~~~~~al~~~~~~s~ 386 (758)
T 1r6b_X 327 --FSNIF--------EKDRALARRFQ-KIDITEPSIEETVQIING----LKPKYEAH-----HDVRYTAKAVRAAVELAV 386 (758)
T ss_dssp --HHCCC--------CCTTSSGGGEE-EEECCCCCHHHHHHHHHH----HHHHHHHH-----HTCCCCHHHHHHHHHHHH
T ss_pred --Hhhhh--------hcCHHHHhCce-EEEcCCCCHHHHHHHHHH----HHHHHHHh-----cCCCCCHHHHHHHHHHhh
Confidence 01111 13477889998 799999999999999876 33333321 156789999988887532
Q ss_pred ---CCCCCHHHHHHHHHHHHHHH
Q 005670 587 ---SKNTGARGLRSLLENILMDA 606 (684)
Q Consensus 587 ---~~~~GAR~Lr~iIe~~l~~a 606 (684)
....-...+..+++.+....
T Consensus 387 ~~i~~~~lp~~~i~lld~a~~~~ 409 (758)
T 1r6b_X 387 KYINDRHLPDKAIDVIDEAGARA 409 (758)
T ss_dssp HHCTTSCTTHHHHHHHHHHHHHH
T ss_pred hhcccccCchHHHHHHHHHHHHH
Confidence 12222234555666555433
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.40 E-value=3e-12 Score=136.07 Aligned_cols=158 Identities=17% Similarity=0.223 Sum_probs=106.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC------------------------EEEEecccccccccccchhHHHHHHHHhc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQARYVGEDVESILYKLLTV 386 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p------------------------fv~i~~s~l~~s~yvG~~~~~~l~~l~~~ 386 (684)
+.+||+||||+|||++|+++|+.+.++ +..++..+- +...+ ...++++++.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~---i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLG---VDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBC---HHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCC---HHHHHHHHHH
Confidence 679999999999999999999998542 222322100 11222 2334555544
Q ss_pred ccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEec
Q 005670 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (684)
Q Consensus 387 a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~t 466 (684)
...........|++|||+|.+... .+++||+.||+ ...+++||++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEe---------------------p~~~~~~Il~ 144 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEE---------------------PPAETWFFLA 144 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTS---------------------CCTTEEEEEE
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 322112345789999999999876 89999999983 1234777777
Q ss_pred cCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHH
Q 005670 467 GAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (684)
Q Consensus 467 gn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~ 546 (684)
++.. ..+.|.+++|+. ++.|.+++++++.
T Consensus 145 t~~~--------------------------------------------------~~l~~ti~SRc~-~~~~~~~~~~~~~ 173 (334)
T 1a5t_A 145 TREP--------------------------------------------------ERLLATLRSRCR-LHYLAPPPEQYAV 173 (334)
T ss_dssp ESCG--------------------------------------------------GGSCHHHHTTSE-EEECCCCCHHHHH
T ss_pred eCCh--------------------------------------------------HhCcHHHhhcce-eeeCCCCCHHHHH
Confidence 6621 024567788875 7999999999998
Q ss_pred HHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 005670 547 QVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLE 600 (684)
Q Consensus 547 ~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe 600 (684)
+++.. ...+++++++.++..+ +++.|.+.++++
T Consensus 174 ~~L~~------------------~~~~~~~~~~~l~~~s---~G~~r~a~~~l~ 206 (334)
T 1a5t_A 174 TWLSR------------------EVTMSQDALLAALRLS---AGSPGAALALFQ 206 (334)
T ss_dssp HHHHH------------------HCCCCHHHHHHHHHHT---TTCHHHHHHTTS
T ss_pred HHHHH------------------hcCCCHHHHHHHHHHc---CCCHHHHHHHhc
Confidence 88754 1257889988888863 445565555443
No 81
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=2.9e-12 Score=135.38 Aligned_cols=211 Identities=19% Similarity=0.214 Sum_probs=134.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|+++.++.|...+..... . ..+.+++|+||||||||++++++++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~----~------------------------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYR----E------------------------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGG----T------------------------CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHc----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999999988877641110 0 012689999999999999999999998
Q ss_pred ---CCCEEEEeccccccc---------------ccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccC
Q 005670 355 ---NVPFVIADATTLTQA---------------RYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (684)
Q Consensus 355 ---~~pfv~i~~s~l~~s---------------~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~ 416 (684)
+.+++.++|...... ...|......+..+..... ....+.||+|||++.+.....
T Consensus 73 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~~~---- 145 (386)
T 2qby_A 73 FLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DYGSQVVIVLDEIDAFVKKYN---- 145 (386)
T ss_dssp TCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TCCSCEEEEEETHHHHHHSSC----
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEcChhhhhccCc----
Confidence 788999997643210 0112222222222222110 012368999999999875310
Q ss_pred CCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccc
Q 005670 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (684)
Q Consensus 417 ~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~ 496 (684)
..++..|++.++.. ...++.+|++++..++
T Consensus 146 ------~~~l~~l~~~~~~~--------------------~~~~~~~I~~~~~~~~------------------------ 175 (386)
T 2qby_A 146 ------DDILYKLSRINSEV--------------------NKSKISFIGITNDVKF------------------------ 175 (386)
T ss_dssp ------STHHHHHHHHHHSC--------------------CC--EEEEEEESCGGG------------------------
T ss_pred ------CHHHHHHhhchhhc--------------------CCCeEEEEEEECCCCh------------------------
Confidence 11777788888620 1234777777763210
Q ss_pred cCCCchhhhhHHHHhhccchhhhhhcCccccccccc-eEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccH
Q 005670 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTE 575 (684)
Q Consensus 497 ~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d-~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~ 575 (684)
. ..+.+.+.+|+. ..+.|++++.+++.+++...+.. ......+++
T Consensus 176 -------------~----------~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~-----------~~~~~~~~~ 221 (386)
T 2qby_A 176 -------------V----------DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM-----------AFKPGVLPD 221 (386)
T ss_dssp -------------G----------GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH-----------HBCSSCSCH
T ss_pred -------------H----------hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh-----------hccCCCCCH
Confidence 0 012345556665 37999999999999998763211 111457899
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 005670 576 NALRLIAKKAISKNTGARGLRSLLENILMDAM 607 (684)
Q Consensus 576 eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al 607 (684)
++++++++.+....++.|.+.++++.++..+.
T Consensus 222 ~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 222 NVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999754334678988888887765543
No 82
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=1.8e-12 Score=136.86 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh------
Q 005670 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV------ 354 (684)
Q Consensus 281 GQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l------ 354 (684)
||+++++.|..++.+.. .+++||+||||+|||++|+++|+.+
T Consensus 1 g~~~~~~~L~~~i~~~~--------------------------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~ 48 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--------------------------------GISILINGEDLSYPREVSLELPEYVEKFPPK 48 (305)
T ss_dssp ---CHHHHHHHHHHTCS--------------------------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCC
T ss_pred ChHHHHHHHHHHHHCCC--------------------------------CcEEEEECCCCCCHHHHHHHHHHhCchhhcc
Confidence 78889998888885110 1689999999999999999999874
Q ss_pred CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 355 NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 355 ~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
...|+.++++. ...|.+ .++++++.+..........|++|||+|.+... .+++||+.||
T Consensus 49 ~~d~~~l~~~~----~~~~id---~ir~li~~~~~~p~~~~~kvviIdead~lt~~--------------a~naLLk~LE 107 (305)
T 2gno_A 49 ASDVLEIDPEG----ENIGID---DIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ--------------AANAFLKALE 107 (305)
T ss_dssp TTTEEEECCSS----SCBCHH---HHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH--------------HHHHTHHHHH
T ss_pred CCCEEEEcCCc----CCCCHH---HHHHHHHHHhhccccCCceEEEeccHHHhCHH--------------HHHHHHHHHh
Confidence 33577777542 123322 34444443322111235689999999999876 8999999998
Q ss_pred CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhHHHHhhcc
Q 005670 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (684)
Q Consensus 435 g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~ 514 (684)
. ...+++||++++..
T Consensus 108 e---------------------p~~~t~fIl~t~~~-------------------------------------------- 122 (305)
T 2gno_A 108 E---------------------PPEYAVIVLNTRRW-------------------------------------------- 122 (305)
T ss_dssp S---------------------CCTTEEEEEEESCG--------------------------------------------
T ss_pred C---------------------CCCCeEEEEEECCh--------------------------------------------
Confidence 3 12357777776521
Q ss_pred chhhhhhcCccccccccceEEEccccCHHHHHHHHhc
Q 005670 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (684)
Q Consensus 515 ~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~ 551 (684)
..+.|.+++| ++.|.+++++++.+++..
T Consensus 123 ------~kl~~tI~SR---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 123 ------HYLLPTIKSR---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp ------GGSCHHHHTT---SEEEECCCCHHHHHHHHH
T ss_pred ------HhChHHHHce---eEeCCCCCHHHHHHHHHH
Confidence 1256888999 899999999999998865
No 83
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.36 E-value=1e-12 Score=124.45 Aligned_cols=116 Identities=26% Similarity=0.321 Sum_probs=77.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.++|++++++.+...+.. ....++||+||||||||++|+++++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~ 70 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSR--------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQG 70 (187)
T ss_dssp CCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTT
T ss_pred hhhcchHHHHHHHHHHhC--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999999888877631 012689999999999999999999997
Q ss_pred -------CCCEEEEecccccc-cccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHH
Q 005670 355 -------NVPFVIADATTLTQ-ARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (684)
Q Consensus 355 -------~~pfv~i~~s~l~~-s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq 426 (684)
+.+++.+++..+.. ..+.|.. ...+..++..... ...+.||||||+|.+...+..... ...++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~-----~~~~~ 141 (187)
T 2p65_A 71 DVPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQD---AEGQVVMFIDEIHTVVGAGAVAEG-----ALDAG 141 (187)
T ss_dssp CSCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHHH---TTTSEEEEETTGGGGSSSSSSCTT-----SCCTH
T ss_pred CCcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHHh---cCCceEEEEeCHHHhccccccccc-----chHHH
Confidence 67788888776542 2233332 3344444433211 124579999999999754221111 12277
Q ss_pred HHHHHHHc
Q 005670 427 QALLKMLE 434 (684)
Q Consensus 427 ~~LL~~LE 434 (684)
+.|+.+++
T Consensus 142 ~~l~~~~~ 149 (187)
T 2p65_A 142 NILKPMLA 149 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 78888876
No 84
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.36 E-value=3.4e-12 Score=141.42 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=144.8
Q ss_pred HHHHhhhccccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHH
Q 005670 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 270 el~~~L~~~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAra 349 (684)
.+.+.+.. |+||+.+|+.|.-++.....+ .....|+||.|+||| ||++|++
T Consensus 207 ~l~~sIap-I~G~e~vK~aLll~L~GG~~k---------------------------~rgdihVLL~G~PGt-KS~Lar~ 257 (506)
T 3f8t_A 207 TFARAIAP-LPGAEEVGKMLALQLFSCVGK---------------------------NSERLHVLLAGYPVV-CSEILHH 257 (506)
T ss_dssp HHHHHHCC-STTCHHHHHHHHHHHTTCCSS---------------------------GGGCCCEEEESCHHH-HHHHHHH
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHcCCccc---------------------------cCCceeEEEECCCCh-HHHHHHH
Confidence 47778888 999999999988877421110 001259999999999 9999999
Q ss_pred H-HHHhCCCEEEEe-cc---cccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchH
Q 005670 350 L-ARYVNVPFVIAD-AT---TLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (684)
Q Consensus 350 L-A~~l~~pfv~i~-~s---~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~ 424 (684)
+ ++.+....+... ++ .+..+ .. + . .. +.-.+|.+..+.+||+|||||+++.++
T Consensus 258 i~~~i~pR~~ft~g~~ss~~gLt~s-~r--~--~--tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~-------------- 315 (506)
T 3f8t_A 258 VLDHLAPRGVYVDLRRTELTDLTAV-LK--E--D--RG-WALRAGAAVLADGGILAVDHLEGAPEP-------------- 315 (506)
T ss_dssp HHHHTCSSEEEEEGGGCCHHHHSEE-EE--E--S--SS-EEEEECHHHHTTTSEEEEECCTTCCHH--------------
T ss_pred HHHHhCCCeEEecCCCCCccCceEE-EE--c--C--CC-cccCCCeeEEcCCCeeehHhhhhCCHH--------------
Confidence 9 888744322211 11 12211 11 1 0 12 334466677888999999999999887
Q ss_pred HHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhh
Q 005670 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (684)
Q Consensus 425 vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~ 504 (684)
+|.+|++.||...+.|. | . .+ ..++.+|+|+|... .|...
T Consensus 316 ~qsaLlEaMEe~~VtI~--G-------~--~l-parf~VIAA~NP~~--------------~yd~~-------------- 355 (506)
T 3f8t_A 316 HRWALMEAMDKGTVTVD--G-------I--AL-NARCAVLAAINPGE--------------QWPSD-------------- 355 (506)
T ss_dssp HHHHHHHHHHHSEEEET--T-------E--EE-ECCCEEEEEECCCC----------------CCS--------------
T ss_pred HHHHHHHHHhCCcEEEC--C-------E--Ec-CCCeEEEEEeCccc--------------ccCCC--------------
Confidence 99999999996666662 2 1 22 34578888988432 01000
Q ss_pred hhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHH-----HHHHhchHHHHHHHHHHHHHhcCccccccHHHHH
Q 005670 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQL-----VQVLTEPKNALGKQYRKMFQMNGVKLHFTENALR 579 (684)
Q Consensus 505 ~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel-----~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~ 579 (684)
..+ + ...+++++++|||.++.+.++..++. ..++. ....++|....+...+...+++++.+
T Consensus 356 --~s~-~--------~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~~ar~~~~~p~ls~ea~~ 421 (506)
T 3f8t_A 356 --PPI-A--------RIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLLYAIREHPAPELTEEARK 421 (506)
T ss_dssp --CGG-G--------GCCSCHHHHTTCSEEEETTC--------------CC---HHHHHHHHHHHHHHCSCCEECHHHHH
T ss_pred --CCc-c--------ccCCChHHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHHHHHhcCCCceeCHHHHH
Confidence 000 1 12478999999998776655543222 11121 23445555544323556789999988
Q ss_pred HHHHhc---------------CCCCCCHHHHHHHHHHHHHHHHhc
Q 005670 580 LIAKKA---------------ISKNTGARGLRSLLENILMDAMYE 609 (684)
Q Consensus 580 ~La~~a---------------~~~~~GAR~Lr~iIe~~l~~al~e 609 (684)
+|.+.- ...+...|.+..++.-.-..|..+
T Consensus 422 yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~ 466 (506)
T 3f8t_A 422 RLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMR 466 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHc
Confidence 887541 234566899999997544444443
No 85
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.34 E-value=1.5e-12 Score=152.60 Aligned_cols=170 Identities=23% Similarity=0.312 Sum_probs=109.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHh---
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l--- 354 (684)
.|+|+++.++.+...+... .+.++||+||||||||++|+++|+.+
T Consensus 181 ~iiG~~~~i~~l~~~l~~~--------------------------------~~~~vLL~G~pGtGKT~la~~la~~l~~~ 228 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRR--------------------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCS--------------------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred CccCchHHHHHHHHHHhCC--------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHhcC
Confidence 3899999999999888511 12689999999999999999999997
Q ss_pred -------CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccccccccCCCCCcchHHHH
Q 005670 355 -------NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (684)
Q Consensus 355 -------~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~r~~~~~~~d~~~e~vq~ 427 (684)
+.+++.+++ ...|.|.. +..++.++..+. ...++||||| ... + +++
T Consensus 229 ~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~----~~~~~iLfiD----~~~---------~-----~~~ 281 (758)
T 3pxi_A 229 EVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI---------D-----ASN 281 (758)
T ss_dssp CSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C--------------------
T ss_pred CCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHH----hcCCEEEEEc----Cch---------h-----HHH
Confidence 678888887 24566754 455666665433 2467999999 111 1 778
Q ss_pred HHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCCCCCcccccccccCCCchhhhhH
Q 005670 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (684)
Q Consensus 428 ~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~ 507 (684)
.|+..|+. ..+.+|+++|..+..+.+
T Consensus 282 ~L~~~l~~-----------------------~~v~~I~at~~~~~~~~~------------------------------- 307 (758)
T 3pxi_A 282 ILKPSLAR-----------------------GELQCIGATTLDEYRKYI------------------------------- 307 (758)
T ss_dssp --CCCTTS-----------------------SSCEEEEECCTTTTHHHH-------------------------------
T ss_pred HHHHHHhc-----------------------CCEEEEeCCChHHHHHHh-------------------------------
Confidence 78888771 136778887744321111
Q ss_pred HHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHh
Q 005670 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKK 584 (684)
Q Consensus 508 ~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~ 584 (684)
.+.|.|++||. +|.|++++.+++.+|++..+ .+|.. ...+.+++++++.++..
T Consensus 308 --------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~----~~~~~-----~~~~~i~~~al~~~~~~ 360 (758)
T 3pxi_A 308 --------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLR----DRYEA-----HHRVSITDDAIEAAVKL 360 (758)
T ss_dssp --------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTT----TTSGG-----GSSCSCCHHHHHHHHHH
T ss_pred --------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHHHH----HHHHH-----hcCCCCCHHHHHHHHHH
Confidence 14578889995 69999999999999987522 22211 12456888888887765
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.08 E-value=1.7e-09 Score=115.79 Aligned_cols=220 Identities=19% Similarity=0.143 Sum_probs=126.4
Q ss_pred ccccChHHHHHHHHHHH-HhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEE--EccCCCcHHHHHHHHHHH
Q 005670 277 KFVIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILL--MGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 277 ~~VvGQe~ak~~L~~aV-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL--~GPPGTGKT~LAraLA~~ 353 (684)
..++|.++.++.|...+ ..... +. ...+.++++ +||||+|||++++.+++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~----~~----------------------~~~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS----GA----------------------GLSDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT----SS----------------------CBCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhc----CC----------------------CCCCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 35799999999888877 42110 00 001268899 999999999999999988
Q ss_pred h---------CCCEEEEeccccccc-c--------------cccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 354 V---------NVPFVIADATTLTQA-R--------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 354 l---------~~pfv~i~~s~l~~s-~--------------yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
+ +.+++.++|...... . ..|......+..+...- .....+.||+|||++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 76 VSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL---YVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp HHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH---HHHTCEEEEEEESTHHHHS
T ss_pred HHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEEeCHHHHhh
Confidence 7 346778887532200 0 00111111111111110 0112467999999999864
Q ss_pred ccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEec--cceEEEeccCcccHHHHHHhccccCCCCC
Q 005670 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDT--KDILFICGGAFVDIEKTISERRQDSSIGF 487 (684)
Q Consensus 410 ~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~--~niIfI~tgn~~dLe~~i~~r~~~~~lgf 487 (684)
... ....++..|++.++.. ..+. .++.+|++++..++.+.+..
T Consensus 153 ~~~--------~~~~~l~~l~~~~~~~------------------~~~~~~~~v~lI~~~~~~~~~~~l~~--------- 197 (412)
T 1w5s_A 153 SPR--------IAAEDLYTLLRVHEEI------------------PSRDGVNRIGFLLVASDVRALSYMRE--------- 197 (412)
T ss_dssp CTT--------SCHHHHHHHHTHHHHS------------------CCTTSCCBEEEEEEEEETHHHHHHHH---------
T ss_pred ccC--------cchHHHHHHHHHHHhc------------------ccCCCCceEEEEEEeccccHHHHHhh---------
Confidence 200 0122666677776510 0011 35777777653322111100
Q ss_pred CcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHHhc
Q 005670 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMN 567 (684)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~~~ 567 (684)
..+.+.+|+...+.|++++.+++.+++...+.. .
T Consensus 198 -----------------------------------~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~-----------~ 231 (412)
T 1w5s_A 198 -----------------------------------KIPQVESQIGFKLHLPAYKSRELYTILEQRAEL-----------G 231 (412)
T ss_dssp -----------------------------------HCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-----------H
T ss_pred -----------------------------------hcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHh-----------c
Confidence 003344455445999999999999988652211 1
Q ss_pred CccccccHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHH
Q 005670 568 GVKLHFTENALRLIAKKAISKN---TGARGLRSLLENILMDA 606 (684)
Q Consensus 568 gi~l~~s~eAl~~La~~a~~~~---~GAR~Lr~iIe~~l~~a 606 (684)
+....+++++++.+++.+.... +..|.+..+++.++..+
T Consensus 232 ~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 232 LRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp BCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 1234588999999999754222 66888888887765544
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.74 E-value=2.6e-08 Score=129.58 Aligned_cols=205 Identities=15% Similarity=0.122 Sum_probs=115.5
Q ss_pred cceEEEEccCCCcHHHHHHH-HHHHhCCCEEEEecccccccccccchhHHHHHHHHhccc---chH----hhhcCcEEEE
Q 005670 330 KSNILLMGPTGSGKTLLAKT-LARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSD---YNV----AAAQQGIVYI 401 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAra-LA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~---~~v----~~a~~gILfI 401 (684)
.+++||+||||||||++|+. +++..+.+++.++++..+.+. ...+.+...+.... +.+ ....++||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~----~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTE----HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHH----HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHH----HHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 47999999999999999954 555446778888888766321 11122222221110 100 0234579999
Q ss_pred ecccccccccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhcc
Q 005670 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (684)
Q Consensus 402 DEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~ 480 (684)
||++....++. ..+.++..|.++|| |... +.+.. ..+...++.||+|+|..+
T Consensus 1343 DEinmp~~d~y--------g~q~~lelLRq~le~gg~y---------d~~~~-~~~~~~~i~lIaA~Npp~--------- 1395 (2695)
T 4akg_A 1343 DEINLPKLDKY--------GSQNVVLFLRQLMEKQGFW---------KTPEN-KWVTIERIHIVGACNPPT--------- 1395 (2695)
T ss_dssp ETTTCSCCCSS--------SCCHHHHHHHHHHHTSSEE---------CTTTC-CEEEEESEEEEEEECCTT---------
T ss_pred ccccccccccc--------CchhHHHHHHHHHhcCCEE---------EcCCC-cEEEecCEEEEEecCCCc---------
Confidence 99997543311 12347777888888 3322 11111 123447899999988431
Q ss_pred ccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHH
Q 005670 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (684)
Q Consensus 481 ~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~ 560 (684)
+-| +..+.|.|++|| .++.++.++.+++.+|+...+....+..
T Consensus 1396 ---~gG---------------------------------R~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~~l~~~ 1438 (2695)
T 4akg_A 1396 ---DPG---------------------------------RIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKAIFKLV 1438 (2695)
T ss_dssp ---STT---------------------------------CCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHHHTTSS
T ss_pred ---cCC---------------------------------CccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHHHhccC
Confidence 000 012567888999 5899999999999999987543331100
Q ss_pred HHHHHhcCcc---ccccHHHHHHHHHh-----cCCCCCCHHHHHHHHHHHHHH
Q 005670 561 RKMFQMNGVK---LHFTENALRLIAKK-----AISKNTGARGLRSLLENILMD 605 (684)
Q Consensus 561 ~~~~~~~gi~---l~~s~eAl~~La~~-----a~~~~~GAR~Lr~iIe~~l~~ 605 (684)
.. ..++. ...+-++...+.+. ...-.++.|.|-++++.++..
T Consensus 1439 ~~---v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~ 1488 (2695)
T 4akg_A 1439 PE---FRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTA 1488 (2695)
T ss_dssp GG---GGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhc
Confidence 00 00000 00111222222221 013356889999999987764
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.66 E-value=9.7e-07 Score=91.76 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=42.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.++|.++.++.|..++.. ...++++||+|+|||++++.+++..+
T Consensus 13 ~~~gR~~el~~L~~~l~~----------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~-- 56 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN----------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP-- 56 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH----------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--
T ss_pred hcCChHHHHHHHHHHHhc----------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--
Confidence 369999999998887741 05899999999999999999999875
Q ss_pred EEEEeccc
Q 005670 358 FVIADATT 365 (684)
Q Consensus 358 fv~i~~s~ 365 (684)
.+.+++..
T Consensus 57 ~~~~~~~~ 64 (350)
T 2qen_A 57 GILIDCRE 64 (350)
T ss_dssp EEEEEHHH
T ss_pred cEEEEeec
Confidence 66677653
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.63 E-value=1.8e-08 Score=96.62 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=50.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccccccccccchhHHHHHHHHhcccc---hHhhhcCcEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTLTQARYVGEDVESILYKLLTVSDY---NVAAAQQGIVYIDE 403 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~---~v~~a~~gILfIDE 403 (684)
.+++|+||||||||+++++++..+ +..++.+++.++.. .+...+..... .-....+.+|+|||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF----------RLKHLMDEGKDTKFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH----------HHHHHHHHTCCSHHHHHHHTCSEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH----------HHHHHhcCchHHHHHHHhcCCCEEEEeC
Confidence 689999999999999999999887 44555666655431 11111111000 00123568999999
Q ss_pred ccccccccccccCCCCCcchHHHHHHHHHHc
Q 005670 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
++..... ...+..|+.+++
T Consensus 109 ~~~~~~~------------~~~~~~l~~ll~ 127 (180)
T 3ec2_A 109 LGSERLS------------DWQRELISYIIT 127 (180)
T ss_dssp CSSSCCC------------HHHHHHHHHHHH
T ss_pred CCCCcCC------------HHHHHHHHHHHH
Confidence 9854221 115566777775
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.46 E-value=4.4e-08 Score=95.29 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=32.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~ 367 (684)
.+++|+||||||||++|+++++.+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 689999999999999999999988 5678888887654
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.44 E-value=2e-06 Score=112.31 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=52.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
.+.++.||+|||||++++++|+.+|.+++.++|++-.. ...+...+..+ ...++++++||++++.++
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld--------~~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD--------YQVLSRLLVGI-----TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC--------HHHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC--------hhHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence 57899999999999999999999999999999997552 12223333221 124589999999999876
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.42 E-value=5.1e-06 Score=86.37 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=31.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
..++++||+|+|||++++.+++.++..++.+++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 378999999999999999999998777788887643
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.39 E-value=9.4e-07 Score=93.39 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=105.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---C-CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN---V-PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~-pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDk 406 (684)
+.+||+||+|+||++.++.+++.+. . ++..+. +. . ..+... +.+.....+. .+...||+|||++.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~-~---~~~~~~-l~~~~~~~pl---f~~~kvvii~~~~~ 87 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---ID-P---NTDWNA-IFSLCQAMSL---FASRQTLLLLLPEN 87 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---CC-T---TCCHHH-HHHHHHHHHH---CCSCEEEEEECCSS
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---ec-C---CCCHHH-HHHHhcCcCC---ccCCeEEEEECCCC
Confidence 6899999999999999999988762 1 221111 11 0 012222 2222222111 23567999999999
Q ss_pred -cccccccccCCCCCcchHHHHHHHHHHcCceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHHHhccccCCC
Q 005670 407 -ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (684)
Q Consensus 407 -l~~~r~~~~~~~d~~~e~vq~~LL~~LEg~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i~~r~~~~~l 485 (684)
+... .+++|++.+|. ...+++||++++..+
T Consensus 88 kl~~~--------------~~~aLl~~le~---------------------p~~~~~~il~~~~~~-------------- 118 (343)
T 1jr3_D 88 GPNAA--------------INEQLLTLTGL---------------------LHDDLLLIVRGNKLS-------------- 118 (343)
T ss_dssp CCCTT--------------HHHHHHHHHTT---------------------CBTTEEEEEEESCCC--------------
T ss_pred CCChH--------------HHHHHHHHHhc---------------------CCCCeEEEEEcCCCC--------------
Confidence 8765 89999999983 012355555543111
Q ss_pred CCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchHHHHHHHHHHHHH
Q 005670 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (684)
Q Consensus 486 gf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l~~L~kq~~~~~~ 565 (684)
...... .+.+.+.+|.. ++.|.+++.+++.+.+...+ .
T Consensus 119 ----------------~~~~~~--------------k~~~~i~sr~~-~~~~~~l~~~~l~~~l~~~~-----------~ 156 (343)
T 1jr3_D 119 ----------------KAQENA--------------AWFTALANRSV-QVTCQTPEQAQLPRWVAARA-----------K 156 (343)
T ss_dssp ----------------TTTTTS--------------HHHHHHTTTCE-EEEECCCCTTHHHHHHHHHH-----------H
T ss_pred ----------------hhhHhh--------------HHHHHHHhCce-EEEeeCCCHHHHHHHHHHHH-----------H
Confidence 000000 12244555653 89999999999988776522 1
Q ss_pred hcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 005670 566 MNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILM 604 (684)
Q Consensus 566 ~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~ 604 (684)
.. .+.+++++++.|++. -+++.|.+.+.++.+..
T Consensus 157 ~~--g~~i~~~a~~~l~~~---~~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 157 QL--NLELDDAANQVLCYC---YEGNLLALAQALERLSL 190 (343)
T ss_dssp HT--TCEECHHHHHHHHHS---STTCHHHHHHHHHHHHH
T ss_pred Hc--CCCCCHHHHHHHHHH---hchHHHHHHHHHHHHHH
Confidence 22 567999999999996 35678999999998765
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.35 E-value=4.9e-07 Score=85.26 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=52.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl 407 (684)
..++|+||+|+|||+|+++++..+ +...+.+++.++... .+ ...+.+|+|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------~~---------~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------DA---------AFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------GG---------GGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------HH---------HhCCCEEEEeCcccc
Confidence 689999999999999999999988 566788888776521 00 124579999999987
Q ss_pred ccccccccCCCCCcchHHHHHHHHHHc
Q 005670 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (684)
Q Consensus 408 ~~~r~~~~~~~d~~~e~vq~~LL~~LE 434 (684)
... .+..|+.+++
T Consensus 96 ~~~--------------~~~~l~~li~ 108 (149)
T 2kjq_A 96 GNE--------------EQALLFSIFN 108 (149)
T ss_dssp CSH--------------HHHHHHHHHH
T ss_pred ChH--------------HHHHHHHHHH
Confidence 654 4666777775
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.24 E-value=2.5e-06 Score=88.42 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.+++|+||||||||++|++||+.+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 6899999999999999999999763
No 96
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.22 E-value=2.2e-06 Score=107.77 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=86.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhh-------hcccc-----ccCCCCCCCCCCCCCcc---ccccc--ceEEEEccCCC
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNE-------SSQKR-----SAGESSSCTTDGVDDDT---VELEK--SNILLMGPTGS 341 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~---v~~~~--~~vLL~GPPGT 341 (684)
|-|.+++|+.+.+++.++...-+.. ...+. +.|.. ..+. ..-.| +.+|++|||||
T Consensus 1022 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~--------glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1022 MSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSL--------SLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCH--------HHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCch--------hHHHHhccCCCCCCCEEEEEcCCCC
Confidence 7789999999999998766432211 00000 01100 0000 01112 45999999999
Q ss_pred cHHHHHHHHHHHh---CCCEEEEeccccc-----------ccccccc----hhHHHHHHHHhcccchHhhhcCcEEEEec
Q 005670 342 GKTLLAKTLARYV---NVPFVIADATTLT-----------QARYVGE----DVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (684)
Q Consensus 342 GKT~LAraLA~~l---~~pfv~i~~s~l~-----------~s~yvG~----~~~~~l~~l~~~a~~~v~~a~~gILfIDE 403 (684)
|||++|++++.+. +.|-+.++..+.. -+.|+++ . ++.++.++..++ ...+++||+||
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~-e~~l~~~~~~ar----~~~~~~i~~d~ 1168 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEICDALAR----SGAVDVIVVDS 1168 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHHH----HTCCSEEEESC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccch-HHHHHHHHHHHH----hcCCeEEEeCc
Confidence 9999999998876 4566666665533 1456666 4 566777765443 45789999999
Q ss_pred ccccccccccccCCCC--C-cchHHHHHHHHHHcC
Q 005670 404 VDKITKKAESLNISRD--V-SGEGVQQALLKMLEG 435 (684)
Q Consensus 404 IDkl~~~r~~~~~~~d--~-~~e~vq~~LL~~LEg 435 (684)
++.+.+.++..+...+ . -.+++.+++|.-|++
T Consensus 1169 ~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1169 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp GGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 9999998553221222 1 223467777777764
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.22 E-value=2.4e-07 Score=97.61 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=31.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~i~~s~l~ 367 (684)
.+++|+||||||||+||+++|+.+. .+++.+++.++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 6999999999999999999998764 677777776554
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.18 E-value=4.5e-06 Score=109.81 Aligned_cols=151 Identities=20% Similarity=0.270 Sum_probs=94.2
Q ss_pred ceEEEEccCCCcHHHHHHH-HHHHhCCCEEEEecccccccccccchhHHHHHHHHhc----cc----chHh----hhcCc
Q 005670 331 SNILLMGPTGSGKTLLAKT-LARYVNVPFVIADATTLTQARYVGEDVESILYKLLTV----SD----YNVA----AAQQG 397 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAra-LA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~----a~----~~v~----~a~~g 397 (684)
.++||+||||||||.+++. +++..+.+++.++++.-+.+ ..+...+.. .. +.+- ..+..
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 6899999999999977654 44444667888998876632 222222221 11 1111 12346
Q ss_pred EEEEecccccccccccccCCCCCcchHHHHHHHHHHc-CceeeccCCCCccCCCCCeEEEeccceEEEeccCcccHHHHH
Q 005670 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (684)
Q Consensus 398 ILfIDEIDkl~~~r~~~~~~~d~~~e~vq~~LL~~LE-g~~v~Ip~~g~~~~~~g~~i~id~~niIfI~tgn~~dLe~~i 476 (684)
||||||++....+. -..+.+...|.++|| |+... +. .+. .+...++.||+|.|..+
T Consensus 1377 VlFiDDiNmp~~D~--------yGtQ~~ielLrqlld~~g~yd-~~-------~~~--~~~i~d~~~vaamnPp~----- 1433 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDK--------YGTQRVITFIRQMVEKGGFWR-TS-------DHT--WIKLDKIQFVGACNPPT----- 1433 (3245)
T ss_dssp EEEETTTTCCCCCT--------TSCCHHHHHHHHHHHHSEEEE-TT-------TTE--EEEESSEEEEEEECCTT-----
T ss_pred EEEecccCCCCccc--------cccccHHHHHHHHHHcCCeEE-CC-------CCe--EEEecCeEEEEEcCCCC-----
Confidence 99999999854431 112347888888888 44432 11 111 34457899999887331
Q ss_pred HhccccCCCCCCcccccccccCCCchhhhhHHHHhhccchhhhhhcCccccccccceEEEccccCHHHHHHHHhchH
Q 005670 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (684)
Q Consensus 477 ~~r~~~~~lgf~~~~~~~~~~~~~~~~~~~~~Ll~~v~~~dll~~~f~PeLl~R~d~iI~f~pLseeel~~Il~~~l 553 (684)
.-| ++.+.|.|++||. ++.++.++.+++..|....+
T Consensus 1434 -------~gG---------------------------------r~~l~~Rf~r~F~-vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1434 -------DAG---------------------------------RVQLTHRFLRHAP-ILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp -------STT---------------------------------CCCCCHHHHTTCC-EEECCCCCHHHHHHHHHHHH
T ss_pred -------CCC---------------------------------CccCCHHHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence 000 0125677888888 58999999999999976543
No 99
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.99 E-value=4.1e-06 Score=83.81 Aligned_cols=77 Identities=12% Similarity=0.306 Sum_probs=49.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
.++||+||||||||++|.++|+.+....+....+. +.+ . +.. .....||+|||+|....
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f-~----------l~~------l~~~kIiiLDEad~~~~- 117 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF-W----------LEP------LTDTKVAMLDDATTTCW- 117 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG-G----------GGG------GTTCSSEEEEEECHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh-h----------hcc------cCCCCEEEEECCCchhH-
Confidence 57999999999999999999999865432211110 000 0 000 01235999999985421
Q ss_pred cccccCCCCCcchHHHHHHHHHHcCceeec
Q 005670 411 AESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (684)
Q Consensus 411 r~~~~~~~d~~~e~vq~~LL~~LEg~~v~I 440 (684)
+.+...+..+|||..+.+
T Consensus 118 ------------~~~d~~lrn~ldG~~~~i 135 (212)
T 1tue_A 118 ------------TYFDTYMRNALDGNPISI 135 (212)
T ss_dssp ------------HHHHHHCHHHHHTCCEEE
T ss_pred ------------HHHHHHHHHHhCCCcccH
Confidence 125667888899876554
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.94 E-value=8.8e-05 Score=97.94 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=50.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
.+..+.||+|||||++++.+|+.+|.+++.++|++-... ..+...+... ...++..++|||+++..+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~--------~~~g~i~~G~-----~~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL--------QAMSRIFVGL-----CQCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH--------HHHHHHHhhH-----hhcCcEEEehhhhcCCHH
Confidence 455789999999999999999999999999999875421 2222333221 124688999999999876
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.75 E-value=2.7e-05 Score=82.88 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=43.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEecccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~ 408 (684)
..++|+||||||||+||.++|...+. .|+.....+.. ..+. .+.+..+..+.+. +.. .+ +|||||++.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v-~~~~-~~le~~l~~i~~~----l~~-~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL-SGYN-TDFNVFVDDIARA----MLQ-HR-VIVIDSLKNVI 195 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSS-TTCB-CCHHHHHHHHHHH----HHH-CS-EEEEECCTTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhh-hhhh-cCHHHHHHHHHHH----Hhh-CC-EEEEecccccc
Confidence 56799999999999999999886543 46665323322 1122 2223333333322 112 23 99999999996
Q ss_pred cc
Q 005670 409 KK 410 (684)
Q Consensus 409 ~~ 410 (684)
..
T Consensus 196 ~~ 197 (331)
T 2vhj_A 196 GA 197 (331)
T ss_dssp --
T ss_pred cc
Confidence 64
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.75 E-value=3.5e-05 Score=76.27 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=45.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--------C-CCEEEEecccccccccc-------------cch-hHHHHHHHHhcc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV--------N-VPFVIADATTLTQARYV-------------GED-VESILYKLLTVS 387 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l--------~-~pfv~i~~s~l~~s~yv-------------G~~-~~~~l~~l~~~a 387 (684)
...|++|+||||||++|..++... + .+++..++.++.. ++. ++. ....+...+..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI-PHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS-CCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc-cccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 578999999999999998864432 3 6666666665542 111 100 01122222111
Q ss_pred cchHhhhcCcEEEEecccccccc
Q 005670 388 DYNVAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 388 ~~~v~~a~~gILfIDEIDkl~~~ 410 (684)
....++||+|||++.+.+.
T Consensus 84 ----~~~~~~vliIDEAq~l~~~ 102 (199)
T 2r2a_A 84 ----PENIGSIVIVDEAQDVWPA 102 (199)
T ss_dssp ----GGGTTCEEEETTGGGTSBC
T ss_pred ----cccCceEEEEEChhhhccC
Confidence 1234789999999999654
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.38 E-value=0.00018 Score=91.80 Aligned_cols=77 Identities=23% Similarity=0.234 Sum_probs=48.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---cccccc-----------hhHHHHHHHHhcccchHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---ARYVGE-----------DVESILYKLLTVSDYNVA 392 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~---s~yvG~-----------~~~~~l~~l~~~a~~~v~ 392 (684)
..+++|+||||||||+||.+++... +...+.++...... ....|. ..+..++.+. ..+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~----~lvr 1502 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD----ALAR 1502 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH----HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHH----HHHh
Confidence 4799999999999999999997775 44566666654321 111120 0112222222 2233
Q ss_pred hhcCcEEEEecccccccc
Q 005670 393 AAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 393 ~a~~gILfIDEIDkl~~~ 410 (684)
...+.+|||||++.+.+.
T Consensus 1503 ~~~~~lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPK 1520 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred cCCCCEEEEcChhHhccc
Confidence 457899999999988764
No 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.20 E-value=0.00023 Score=67.23 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=30.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
..++|+|+||+|||++|+.|++.++.+|+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 5789999999999999999999999888876654
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.18 E-value=0.00021 Score=67.99 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=29.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..++|+|+||+|||++|+.+|+.++.+|+..|
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 68999999999999999999999999987554
No 106
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.14 E-value=0.0014 Score=72.16 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.++++.|+||||||+++.+++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998887
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.03 E-value=0.0033 Score=60.70 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
.+.|+||+|+|||+|++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999986443
No 108
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.97 E-value=0.00044 Score=67.15 Aligned_cols=32 Identities=50% Similarity=0.750 Sum_probs=28.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..++|.||||+|||++++.||+.++.+|+..|
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 58999999999999999999999999886544
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.94 E-value=0.00054 Score=63.78 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.++|.|+||+|||++|+.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 6899999999999999999999998886554
No 110
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.90 E-value=0.00053 Score=64.33 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=28.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.+++|.|+||+|||++|+.||+.++.+++..|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 68999999999999999999999999886543
No 111
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.85 E-value=0.00059 Score=64.89 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..|+|+|+||+|||++|+.|++.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 46899999999999999999999998886544
No 112
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.84 E-value=0.00052 Score=64.98 Aligned_cols=30 Identities=40% Similarity=0.669 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..++|.|+||+|||++|+.||+.++.+|+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 368999999999999999999999987764
No 113
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.81 E-value=0.00063 Score=64.56 Aligned_cols=31 Identities=42% Similarity=0.611 Sum_probs=27.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|+|+||+|||++++.+++.++.+++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 6799999999999999999999998777543
No 114
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.81 E-value=0.00069 Score=64.48 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=27.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|.|+||+|||++++.+++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 6789999999999999999999998887654
No 115
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.77 E-value=0.0016 Score=63.21 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.-++++||+|+|||+++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999986555443
No 116
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=96.76 E-value=0.003 Score=55.39 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=61.0
Q ss_pred cccCHHHHHHHHhchHHHHHHHHHHHHHhcCccccccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCccCCC
Q 005670 538 LALTENQLVQVLTEPKNALGKQYRKMFQMNGVKLHFTENALRLIAKKAISKNTGARGLRSLLENILMDAMYEIPDVRAGD 617 (684)
Q Consensus 538 ~pLseeel~~Il~~~l~~L~kq~~~~~~~~gi~l~~s~eAl~~La~~a~~~~~GAR~Lr~iIe~~l~~al~e~~~~~~~~ 617 (684)
+.++++|..+|.++++ ..+..+......-.+.++++|+..|.+. |+...|+|+|++.|..++..+..++....
T Consensus 1 sGYt~~EK~~IAk~~L---iPkql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~~~~--- 73 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHL---LPKQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLLLDK--- 73 (94)
T ss_dssp CCCCHHHHHHHHHHTH---HHHHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHTCT---
T ss_pred CCCCHHHHHHHHHHhc---cHHHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHHHcC---
Confidence 3578999999998853 3332222222233688999999999997 99999999999999999999888776411
Q ss_pred CccceEEeccccc
Q 005670 618 EVIDAVVVDEEAV 630 (684)
Q Consensus 618 ~~i~~~~id~e~v 630 (684)
....+.||.+.+
T Consensus 74 -~~~~v~v~~~~l 85 (94)
T 1qzm_A 74 -SLKHIEINGDNL 85 (94)
T ss_dssp -TCCCEEECTTTT
T ss_pred -CCCCeeECHHHH
Confidence 113456665543
No 117
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.75 E-value=0.00098 Score=64.48 Aligned_cols=32 Identities=34% Similarity=0.609 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..|+|.|+||+|||++|+.|++.++.+++..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 57999999999999999999999998876543
No 118
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.71 E-value=0.0008 Score=63.81 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=26.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..|+|.|+||+|||++|+.+++.++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 679999999999999999999999876654
No 119
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.71 E-value=0.00079 Score=63.12 Aligned_cols=30 Identities=40% Similarity=0.750 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..+.|+||+|+|||++++.+|..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 579999999999999999999999876553
No 120
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.70 E-value=0.0053 Score=61.65 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
..++++||+|+|||.+|.+++..++.+.+.+-.+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589999999999999999988887666555443
No 121
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.68 E-value=0.024 Score=57.23 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
.++++.|+||||||++|-.+|..+ |...+.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 689999999999999999998876 556555554
No 122
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.67 E-value=0.0011 Score=67.49 Aligned_cols=33 Identities=39% Similarity=0.453 Sum_probs=29.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
.++|+||||+|||++|+.||+.++.+++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 578999999999999999999999988776653
No 123
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.66 E-value=0.00083 Score=64.45 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=26.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH-hCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY-VNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~-l~~pfv~i 361 (684)
..++|+|+||+|||++++.+|+. ++.+++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 57999999999999999999999 67666543
No 124
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.62 E-value=0.0033 Score=62.01 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
..+.|.||+|+|||+|++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 578899999999999999998
No 125
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.61 E-value=0.0011 Score=63.34 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..++|.|+||+|||++|+.||+.++.+++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 57999999999999999999999988765443
No 126
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.58 E-value=0.001 Score=62.20 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|.|+||+|||++|+.|++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4689999999999999999999998877643
No 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.57 E-value=0.0038 Score=62.82 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=23.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i 361 (684)
.-++++||+|+|||+++..++..+ +...+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 578889999999999988887666 3444444
No 128
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.57 E-value=0.0011 Score=61.25 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|.||||+|||++|+.+ +.++.+++..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 46899999999999999999 8888777553
No 129
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.57 E-value=0.0038 Score=71.14 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+++.|+||||||+++.+++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 688999999999999999998876
No 130
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.56 E-value=0.0014 Score=63.45 Aligned_cols=32 Identities=34% Similarity=0.672 Sum_probs=28.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..++|.|++|+|||++|+.|++.++.+++..|
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 57999999999999999999999987776543
No 131
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.56 E-value=0.0012 Score=64.87 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|.|+||+|||++|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 6899999999999999999999998877554
No 132
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.52 E-value=0.0014 Score=61.04 Aligned_cols=31 Identities=39% Similarity=0.596 Sum_probs=27.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.|+|.|+||+|||++|+.+++.++.+++..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999998886543
No 133
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.48 E-value=0.0014 Score=62.66 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..|+|.|+||+|||++|+.|++.++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5799999999999999999999998665443
No 134
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.47 E-value=0.0015 Score=62.29 Aligned_cols=36 Identities=39% Similarity=0.522 Sum_probs=30.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
..+.|.||+|+||||+++.|+...+.+.+.++..++
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 578999999999999999999987777777776543
No 135
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.46 E-value=0.0014 Score=61.94 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|.|+||+|||++|+.+++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5789999999999999999999998766544
No 136
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.45 E-value=0.0016 Score=63.69 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=26.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
.++|+||||+|||++|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998877655
No 137
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.45 E-value=0.00095 Score=62.58 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH-HhCCCE
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR-YVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~-~l~~pf 358 (684)
..++|.|+||+|||++|+.|++ .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 5789999999999999999998 454333
No 138
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.45 E-value=0.0012 Score=62.61 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=26.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..++|.|+||+|||++++.|++.++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 578999999999999999999999876643
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.44 E-value=0.0012 Score=62.38 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..++|.|+||+|||++++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999886
No 140
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.41 E-value=0.0018 Score=63.18 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=27.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.|+|.||||+|||++|+.|++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4789999999999999999999988776553
No 141
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.40 E-value=0.0016 Score=61.56 Aligned_cols=29 Identities=41% Similarity=0.505 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
..++|.|+||+|||++|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 57999999999999999999999998876
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.40 E-value=0.015 Score=64.28 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=30.2
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l 366 (684)
++..++++|++|+|||+++..||..+ +.....+++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 35789999999999999999999887 455666665443
No 143
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.39 E-value=0.0021 Score=60.44 Aligned_cols=34 Identities=35% Similarity=0.570 Sum_probs=27.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
..++|+||+|+|||++++.+++.++..++ +..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 57899999999999999999999876554 44443
No 144
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.38 E-value=0.016 Score=63.93 Aligned_cols=36 Identities=33% Similarity=0.346 Sum_probs=28.7
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
++..++++||+|+|||+++..+|..+ +.....+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 35789999999999999999999887 4555555544
No 145
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.36 E-value=0.0018 Score=64.38 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|.|+||+|||++|+.||+.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999998777654
No 146
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.33 E-value=0.0054 Score=60.28 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH--h-------CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY--V-------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~--l-------~~pfv~i~~s~ 365 (684)
..++|+||||+|||++++.++.. + +...+.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 57899999999999999999984 3 34566666544
No 147
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.32 E-value=0.0018 Score=64.06 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|.|+||+|||++|+.||+.++.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 6799999999999999999999998776544
No 148
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.32 E-value=0.006 Score=61.95 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=30.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH---hCCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~---l~~pfv~i~~s~l 366 (684)
..|+|.|+||+|||++|+.|++. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 57999999999999999999998 6778876665443
No 149
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.30 E-value=0.002 Score=62.10 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..|+|.|+||+|||++++.|++.++.+++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 57899999999999999999999987665443
No 150
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.23 E-value=0.0023 Score=62.96 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..++|.|+||+|||++|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5789999999999999999999998777654
No 151
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.22 E-value=0.0016 Score=64.11 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..++|.|+||+|||++++.||+.++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 579999999999999999999999876543
No 152
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.22 E-value=0.0024 Score=64.36 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..|+|.||||+|||++|+.|++.++.+++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 6899999999999999999999998766544
No 153
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.0024 Score=64.60 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=31.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~ 367 (684)
+..++|.|+||+|||++|+.|++.++.+++.++...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 36899999999999999999999997666667766553
No 154
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.21 E-value=0.011 Score=57.09 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~ 365 (684)
..++|+||||+|||++++.++...+.+.+.++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 57899999999999999999984456666676543
No 155
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.17 E-value=0.0027 Score=62.10 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
.++|.|+||+|||++|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 479999999999999999999998877655
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.16 E-value=0.0096 Score=63.63 Aligned_cols=79 Identities=25% Similarity=0.285 Sum_probs=44.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccccccc---ccccchhHH-------HHHHHHhcccchHhhhcCc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---RYVGEDVES-------ILYKLLTVSDYNVAAAQQG 397 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s---~yvG~~~~~-------~l~~l~~~a~~~v~~a~~g 397 (684)
..++|+||||+|||++|..++..+ +.+.+.++...-... ...|.+... .+.+++......+....+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 568999999999999999998655 456666665432110 011111000 0111111111111223578
Q ss_pred EEEEeccccccc
Q 005670 398 IVYIDEVDKITK 409 (684)
Q Consensus 398 ILfIDEIDkl~~ 409 (684)
+|+||++..+..
T Consensus 142 lIVIDsl~~l~~ 153 (349)
T 2zr9_A 142 IIVIDSVAALVP 153 (349)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcChHhhcc
Confidence 999999999874
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.15 E-value=0.0031 Score=61.13 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
..+.|.||+|+|||++++.|++.++..+ ++...+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 6789999999999999999999997654 444443
No 158
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.14 E-value=0.003 Score=67.10 Aligned_cols=34 Identities=41% Similarity=0.596 Sum_probs=30.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
..++|+||||+|||++|+.||+.++.+++.+|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 5789999999999999999999999888877754
No 159
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.13 E-value=0.0044 Score=58.66 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=27.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~ 362 (684)
.+.|.|+||+|||++++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88887665
No 160
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.12 E-value=0.02 Score=61.47 Aligned_cols=35 Identities=26% Similarity=0.196 Sum_probs=28.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~ 365 (684)
..++|+||||+|||+|+..++..+ +.+.+.++...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 578899999999999999998875 45666777654
No 161
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.11 E-value=0.0052 Score=58.19 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=31.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l 366 (684)
..+.|+|++|+|||++++.+++.+ +.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 678899999999999999999998 889988875443
No 162
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.04 E-value=0.0091 Score=57.88 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=25.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~ 362 (684)
..++|+||+|+|||++++.++..+ +.+.+.++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578899999999999999998665 44555444
No 163
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.03 E-value=0.0042 Score=61.53 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=27.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
.++|.||||+||+|.|+.||+.++.+. ++..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 478999999999999999999997655 444443
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.01 E-value=0.0042 Score=67.28 Aligned_cols=61 Identities=26% Similarity=0.265 Sum_probs=40.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccccccccccchhHHHHHHHHhcccchHhhhcCcEEEEeccccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQARYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l~~s~yvG~~~~~~l~~l~~~a~~~v~~a~~gILfIDEIDkl~~ 409 (684)
..++|+||||+|||+++++++..++..++.++... .. ... .+... .+..++++||++.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~---~~------~~~---~lg~~------~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL---DR------LNF---ELGVA------IDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT---TT------HHH---HHGGG------TTCSCEEETTCCCSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc---hh------HHH---HHHHh------cchhHHHHHHHHHHHH
Confidence 68899999999999999999999876654432211 00 010 11111 1346789999998865
No 165
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.00 E-value=0.0042 Score=64.38 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
..++|.||||+|||++|+.+++.++..++.+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 689999999999999999999988545666766433
No 166
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.98 E-value=0.0044 Score=59.21 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=25.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
.++|.|++|+||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999987654
No 167
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.96 E-value=0.0049 Score=60.26 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=26.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
..+.|+||+|+||||+++.+++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 47899999999999999999999987664
No 168
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.95 E-value=0.0042 Score=62.17 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~ 365 (684)
..|+|.||||+||+|.|+.|++.++.+. ++..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGd 62 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGD 62 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHH
Confidence 6788999999999999999999997654 44433
No 169
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.86 E-value=0.004 Score=61.65 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=25.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
.++|.|+||+|||++|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998665443
No 170
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.86 E-value=0.0035 Score=66.94 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=30.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
..++|.||+|+|||+||..||+.++.+++..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4789999999999999999999998888776654
No 171
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.85 E-value=0.004 Score=60.08 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=25.9
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.+.|+|++|+|||++++.|++ ++.+++..|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887765544
No 172
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.84 E-value=0.0052 Score=59.01 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=27.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
.+.|.|++|+|||++++.+|+.++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 7889999999999999999999998876443
No 173
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.84 E-value=0.0033 Score=59.39 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=22.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.|+|.|+||+|||++|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999885
No 174
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.81 E-value=0.014 Score=74.82 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=49.6
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccc---ccc--------------chhHHHHHHHHhccc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAR---YVG--------------EDVESILYKLLTVSD 388 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~---yvG--------------~~~~~~l~~l~~~a~ 388 (684)
+..+++|+||||||||++|.+++... +.+.+.++..+..+.- ..| +........+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l----- 1154 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL----- 1154 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHH-----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHH-----
Confidence 44789999999999999999987654 5677777777654211 111 1111111111
Q ss_pred chHhhhcCcEEEEecccccccccc
Q 005670 389 YNVAAAQQGIVYIDEVDKITKKAE 412 (684)
Q Consensus 389 ~~v~~a~~gILfIDEIDkl~~~r~ 412 (684)
.....+.+|+|||+..+.+.+.
T Consensus 1155 --~~~~~~dlvVIDsl~~L~~~~e 1176 (2050)
T 3cmu_A 1155 --ARSGAVDVIVVDSVAALTPKAE 1176 (2050)
T ss_dssp --HHHTCCSEEEESCGGGCCCHHH
T ss_pred --HHhCCCCEEEECCccccccccc
Confidence 1134578999999999976543
No 175
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.81 E-value=0.0051 Score=58.87 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..|.|.|++|+|||++++.|++. +.+++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 67999999999999999999998 7777543
No 176
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.80 E-value=0.006 Score=58.52 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~~pfv~i~ 362 (684)
..|+|.|++|+|||++++.|++.+ +.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 578999999999999999999998 46776654
No 177
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.79 E-value=0.027 Score=60.43 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=45.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccc---cccch----------hHHHHHHHHhcccchHhhh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAR---YVGED----------VESILYKLLTVSDYNVAAA 394 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~---yvG~~----------~~~~l~~l~~~a~~~v~~a 394 (684)
..++++|+||+|||++|..++..+ +.+.+.++...-.... -.|.+ ....+...+. ..+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~---~l~~~~ 140 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---ALARSG 140 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH---HHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHH---HHHhcc
Confidence 578999999999999999988765 5567777764321100 01110 0111122211 111234
Q ss_pred cCcEEEEeccccccc
Q 005670 395 QQGIVYIDEVDKITK 409 (684)
Q Consensus 395 ~~gILfIDEIDkl~~ 409 (684)
...+|+||.+..+..
T Consensus 141 ~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 141 AVDVIVVDSVAALTP 155 (356)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcCHHHhcc
Confidence 568999999999875
No 178
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.77 E-value=0.0077 Score=57.31 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=26.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005670 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~ 362 (684)
-|.|.|++|+||||+++.+++.+ +.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999999 88876543
No 179
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.76 E-value=0.0069 Score=58.66 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=28.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l 366 (684)
..+.|.||+|+|||++++.|+..+ +...+.++...+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 678899999999999999999998 444345565444
No 180
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.71 E-value=0.11 Score=58.27 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=34.5
Q ss_pred cChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005670 280 IGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 280 vGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
+|.+..++.|...+...- . .....+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-------~----------------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-------D----------------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-------T----------------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-------C----------------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999988884110 0 0126889999999999999999996
No 181
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.69 E-value=0.01 Score=57.02 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
..|+|.|+||+|||++|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999998763
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.66 E-value=0.0053 Score=59.39 Aligned_cols=30 Identities=40% Similarity=0.510 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..+.|+|++|+||||+++.+++ ++.+++..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 3688999999999999999998 78877643
No 183
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.64 E-value=0.0053 Score=66.02 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=27.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
.+++|+|+||+|||+++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999999887744
No 184
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.62 E-value=0.0037 Score=60.34 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..|+|.|+||+|||++++.|++.++.+++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 6799999999999999999999886554433
No 185
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.57 E-value=0.04 Score=54.39 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=25.6
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEE
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i 361 (684)
+..+++++.+|.|||++|-++|-.. |..+..+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4789999999999999999887665 5555444
No 186
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.56 E-value=0.0061 Score=62.22 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..+.|+|++|+|||++++.||+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5899999999999999999999999887654
No 187
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.52 E-value=0.014 Score=55.57 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=27.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEecc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s 364 (684)
...++|.|+||+|||++++.+++.++ .++..++..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 36789999999999999999999883 345555543
No 188
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.49 E-value=0.0072 Score=59.12 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~ 362 (684)
..+.|+|++|+|||++++.+++.++.+++..|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 46789999999999999999999888775443
No 189
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.46 E-value=0.026 Score=60.55 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+++.||+|+|||++.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 579999999999999999999887
No 190
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.44 E-value=0.014 Score=61.95 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=45.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh-----CCCEEEEecccccc---cccccc-----------hhHHHHHHHHhcccch
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQ---ARYVGE-----------DVESILYKLLTVSDYN 390 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l-----~~pfv~i~~s~l~~---s~yvG~-----------~~~~~l~~l~~~a~~~ 390 (684)
+..++++||||+|||+|+..++..+ +...+.+|..+-.. +.-.|. ..+.....+.+.. ..
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l-~~ 106 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL-DA 106 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH-HT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH-HH
Confidence 3568999999999999987765443 45677777653210 011111 1122201111110 00
Q ss_pred HhhhcCcEEEEecccccccc
Q 005670 391 VAAAQQGIVYIDEVDKITKK 410 (684)
Q Consensus 391 v~~a~~gILfIDEIDkl~~~ 410 (684)
+....+.+|+||-|..+.+.
T Consensus 107 i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp CCTTCCEEEEEECSTTCBCC
T ss_pred hhccCceEEEEecccccccc
Confidence 12346789999999999753
No 191
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.43 E-value=0.027 Score=60.64 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=45.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccccc---cccc-----------hhHHHHHHHHhcccchHhh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAR---YVGE-----------DVESILYKLLTVSDYNVAA 393 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~s~---yvG~-----------~~~~~l~~l~~~a~~~v~~ 393 (684)
..++|+||||+|||++|..++..+ +.+.+.++...-.... ..|. ..+..+ ..+. ..+..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l-~~l~---~l~~~ 150 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL-EIME---LLVRS 150 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHHH---HHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH-HHHH---HHHhc
Confidence 578899999999999999887765 4567777754321100 0111 111111 1111 11122
Q ss_pred hcCcEEEEeccccccc
Q 005670 394 AQQGIVYIDEVDKITK 409 (684)
Q Consensus 394 a~~gILfIDEIDkl~~ 409 (684)
....+|+||.+..+..
T Consensus 151 ~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTP 166 (366)
T ss_dssp TCCSEEEEECTTTCCC
T ss_pred CCCCEEEEeChHHhcc
Confidence 3568999999999975
No 192
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.43 E-value=0.0085 Score=59.64 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=27.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
...+.|.|++|+|||++++.|++.++.+++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3689999999999999999999999877653
No 193
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.43 E-value=0.0046 Score=59.70 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
..|+|.|+||+|||++++.|++.++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999875443
No 194
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.39 E-value=0.011 Score=59.25 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=25.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
..+.|.||+|+||||+++.|++.++...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 6899999999999999999999987654
No 195
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.39 E-value=0.0087 Score=63.28 Aligned_cols=35 Identities=43% Similarity=0.634 Sum_probs=30.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~ 365 (684)
..+++.||+|+|||+||..+|+.++.+++..|.-.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 57889999999999999999999988777766543
No 196
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.39 E-value=0.0082 Score=58.52 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..+.|+|++|+|||++++.+++.++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 5789999999999999999999998777543
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.36 E-value=0.021 Score=59.90 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---------~~pfv~i~~s~ 365 (684)
..++|+||||+|||++|..++..+ +.+.+.++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 578999999999999999998765 34566666554
No 198
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.35 E-value=0.011 Score=59.79 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=26.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..+.|.||+|+|||++++.||+.++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 579999999999999999999999876643
No 199
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.32 E-value=0.015 Score=73.67 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=48.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccccc---cccccchh-------HHHHHHHHhcccchHhhhcC
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---ARYVGEDV-------ESILYKLLTVSDYNVAAAQQ 396 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l~~---s~yvG~~~-------~~~l~~l~~~a~~~v~~a~~ 396 (684)
...++|+||||+|||+||..+|..+ +.+++.++..+... +...|.+. ...+..++......+....+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~ 811 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 811 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCC
Confidence 4689999999999999999998776 44677777654321 11112100 00112222222222334567
Q ss_pred cEEEEeccccccc
Q 005670 397 GIVYIDEVDKITK 409 (684)
Q Consensus 397 gILfIDEIDkl~~ 409 (684)
.+|+||++..+.+
T Consensus 812 ~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 812 DVIVVDSVAALTP 824 (1706)
T ss_dssp SEEEESCSTTCCC
T ss_pred CEEEEechhhhcc
Confidence 8999999999974
No 200
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.29 E-value=0.009 Score=58.36 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
..+.|.|++|+|||++++.|++ ++.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5789999999999999999998 77766544
No 201
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.19 E-value=0.01 Score=62.92 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=28.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
..+++.||+|+|||+||..+|+.++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 5688999999999999999999998766665543
No 202
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.15 E-value=0.011 Score=57.35 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..++|.||||+|||++++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 6789999999999999999999884
No 203
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.12 E-value=0.012 Score=59.24 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=30.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC--------EEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP--------FVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p--------fv~i~~s~l~ 367 (684)
..|.|.|++|+|||++|+.|++.++.+ .+.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 578999999999999999999999876 3356665554
No 204
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.10 E-value=0.016 Score=58.55 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
..+.|.||+|+|||++++.||+.++.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 57889999999999999999999987654
No 205
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.08 E-value=0.0079 Score=61.68 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=25.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~~pfv~i 361 (684)
..++|.|+||+|||++|+.|++.+ +.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 578999999999999999999964 5444433
No 206
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.07 E-value=0.0085 Score=58.04 Aligned_cols=30 Identities=40% Similarity=0.424 Sum_probs=25.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-CCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~~pfv~ 360 (684)
..+.++|++|+|||++++.|++.+ +.+++.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 578899999999999999999987 444443
No 207
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.07 E-value=0.062 Score=58.51 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=25.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---------~~pfv~i~~s~ 365 (684)
..++|+||||+|||+|++.++-.. +...+.++...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 578899999999999999776433 12366666554
No 208
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.05 E-value=0.012 Score=62.95 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=28.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
..+++.||+|+|||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 478999999999999999999999866655543
No 209
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.02 E-value=0.032 Score=59.45 Aligned_cols=35 Identities=37% Similarity=0.410 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---------CCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN---------VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---------~pfv~i~~s~ 365 (684)
..+.|+||||+|||+|++.++..+. ...+.++..+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 5778999999999999999998872 3446676643
No 210
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.00 E-value=0.041 Score=62.93 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999888776655
No 211
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.85 E-value=0.059 Score=56.97 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=42.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC--CEEEEecc-cccc------cccc---cchhHHHHHHHHhcccchHhhhcCcE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADAT-TLTQ------ARYV---GEDVESILYKLLTVSDYNVAAAQQGI 398 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~--pfv~i~~s-~l~~------s~yv---G~~~~~~l~~l~~~a~~~v~~a~~gI 398 (684)
..+++.||+|+|||+++++++..+.. -.+.++.. ++.. -.++ |......+...+ ...+.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL--------~~~p~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCL--------RMRPDR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHT--------TSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHh--------hhCCCE
Confidence 68999999999999999999998842 34555543 2210 0122 222222222222 136789
Q ss_pred EEEecccc
Q 005670 399 VYIDEVDK 406 (684)
Q Consensus 399 LfIDEIDk 406 (684)
|++||+-.
T Consensus 244 lildE~~~ 251 (330)
T 2pt7_A 244 IILGELRS 251 (330)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 99999765
No 212
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.83 E-value=0.014 Score=63.80 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=28.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
..+++.||+|+|||+||..||+.++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 578899999999999999999999876655544
No 213
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.76 E-value=0.013 Score=58.28 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=30.4
Q ss_pred ccccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 327 ~~~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
......++|.||||+|||++|..+++..+ +++..|...+
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 34457899999999999999999999876 6665554433
No 214
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.73 E-value=0.016 Score=55.48 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|+||+|+|||++++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578999999999999999999987
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.72 E-value=0.019 Score=54.76 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||+|++.|++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 216
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.70 E-value=0.022 Score=55.47 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=28.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~i~~s~ 365 (684)
..++|.|++|+|||++++.+++.++ .+++.++...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 5788999999999999999999874 4577776543
No 217
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.66 E-value=0.092 Score=51.78 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.6
Q ss_pred ceEEEEccCCCcHH-HHHHHHHHHh--CCCEEEEec
Q 005670 331 SNILLMGPTGSGKT-LLAKTLARYV--NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT-~LAraLA~~l--~~pfv~i~~ 363 (684)
.-.+++||.|+||| .|.+++.+.. +...+.+..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 56788999999999 8999988766 455555553
No 218
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.61 E-value=0.018 Score=59.31 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=25.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
+..|.|+|++|+|||++|+.|+ .++.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3579999999999999999999 577766443
No 219
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.59 E-value=0.051 Score=57.57 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=27.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---------CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---------~~pfv~i~~s~ 365 (684)
..++|+||||+|||++|..++... +.+.+.++...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 577899999999999999998863 34566666544
No 220
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.57 E-value=0.023 Score=54.09 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=24.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
..++|.||+|+|||++++.|++..+. .+.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~ 34 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEG 34 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcc
Confidence 46789999999999999999986643 233444
No 221
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.52 E-value=0.019 Score=56.03 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||++++.|++.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999999874
No 222
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.48 E-value=0.027 Score=55.15 Aligned_cols=30 Identities=37% Similarity=0.405 Sum_probs=27.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..|.|.|++|+|||++++.||+.++.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 578999999999999999999999999873
No 223
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.46 E-value=0.018 Score=55.79 Aligned_cols=25 Identities=48% Similarity=0.505 Sum_probs=23.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999986
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.46 E-value=0.046 Score=60.11 Aligned_cols=35 Identities=43% Similarity=0.595 Sum_probs=28.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
+..++++|++|+|||+++..+|..+ +.....+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4689999999999999999999877 3455666654
No 225
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.43 E-value=0.023 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 568899999999999999999986
No 226
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.41 E-value=0.012 Score=64.07 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=26.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCCCEE
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~pfv 359 (684)
+.-|+|+|+||+|||++|+.+++.++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 467899999999999999999999876554
No 227
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.27 E-value=0.049 Score=61.26 Aligned_cols=36 Identities=33% Similarity=0.600 Sum_probs=28.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~ 365 (684)
+..|+|+|.||+|||++|+.||+.++ .+...++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 46789999999999999999999984 3444455443
No 228
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.27 E-value=0.036 Score=53.10 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.++++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999987776543
No 229
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.25 E-value=0.05 Score=56.69 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..++|+||||+|||++|..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999875
No 230
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.10 E-value=0.027 Score=54.87 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6788999999999999999999984
No 231
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.09 E-value=0.14 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.168 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.-.+++||.|+|||+.+..++..+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 567899999999999887777665
No 232
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.03 E-value=0.029 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||++++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999998874
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.90 E-value=0.059 Score=52.19 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=27.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
..+.|.|++|+|||++++.++..+ +.+++..+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 578899999999999999999987 4555555433
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.84 E-value=0.042 Score=53.56 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=23.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pf 358 (684)
+.|+|.||+|+|||+|++.|.+.....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4689999999999999999988764444
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.80 E-value=0.033 Score=54.03 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|+||+|+|||+|++.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999998774
No 236
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.72 E-value=0.049 Score=62.67 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=31.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~l 366 (684)
..|+|+|.||+|||++|++|++.+ +.+++.+|...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 679999999999999999999999 889988875433
No 237
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.71 E-value=0.2 Score=56.22 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=27.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
+..|+|+|+||+|||+++..||..+ +.....+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4789999999999999999999776 555666665
No 238
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.63 E-value=0.036 Score=61.70 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 568999999999999999887665
No 239
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.44 E-value=0.023 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.0
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
-+.|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999985
No 240
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.33 E-value=0.081 Score=51.78 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=25.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
..++++||||+|||+++..++..+ +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 578999999999999998886654 445665554
No 241
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.24 E-value=0.096 Score=54.70 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+..+.|.||+|+||||+++.+|..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999987
No 242
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.18 E-value=0.1 Score=57.59 Aligned_cols=27 Identities=37% Similarity=0.680 Sum_probs=24.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
+..|+|+|.||+|||++++.|++.++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 368999999999999999999998753
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.10 E-value=0.057 Score=53.22 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=23.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
...+.|.||+|+|||+|++.|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 36788999999999999999998864
No 244
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.05 E-value=0.2 Score=52.75 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=28.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
+..++++|++|+|||+++..+|..+ +.....+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4688999999999999999999887 4556656654
No 245
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.02 E-value=0.056 Score=52.36 Aligned_cols=24 Identities=50% Similarity=0.540 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|+||+|+|||++++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999855
No 246
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.01 E-value=0.094 Score=59.34 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~ 365 (684)
..++|+|++|+|||++|+.|++.++ .++..++...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 5789999999999999999999874 4566666543
No 247
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.94 E-value=0.13 Score=54.52 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=23.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+..+.|.||+|+||||+++.||..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4788999999999999999999887
No 248
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.94 E-value=0.067 Score=53.56 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=27.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
..|.+.|++|||||++|+.||+.++.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 578899999999999999999999998854
No 249
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.91 E-value=0.14 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.+.||+|+|||++|+.|++.++
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6788999999999999999999885
No 250
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.91 E-value=0.061 Score=54.34 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=26.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhCCCEEEE
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~~pfv~i 361 (684)
.+-|.|+||+|||++|+.|++.++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 567899999999999999999998877543
No 251
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.91 E-value=0.25 Score=59.65 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=35.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHHH
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.++|.++.++.|.+.+...- .....+.|+|+.|+|||+||+.+++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~------------------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLN------------------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTT------------------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhcc------------------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 36999999999998884110 01267889999999999999988654
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.90 E-value=0.062 Score=52.20 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||+|+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999999874
No 253
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.81 E-value=0.17 Score=55.54 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~ 363 (684)
.-+++.|+||+|||+++..+|..+ +.+.+.++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 578899999999999999988765 446666553
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.79 E-value=0.062 Score=52.99 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|+||+|+|||+|++.|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999999999987
No 255
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.58 E-value=0.1 Score=58.56 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=34.3
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005670 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 279 VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
+||.+..++.|...+... ......++++||+|+|||+||+.+++
T Consensus 126 ~vGR~~~l~~L~~~L~~~------------------------------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKL------------------------------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHHTTS------------------------------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHHhcc------------------------------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 699999999998887310 00126789999999999999998864
No 256
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.57 E-value=0.085 Score=49.63 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=25.2
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 326 VELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 326 v~~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
+...+.-.+|+||.|+|||+++++|+-.++
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 344456788999999999999999998875
No 257
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.54 E-value=0.29 Score=53.49 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..++++||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5789999999999999999999885
No 258
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.53 E-value=0.068 Score=53.34 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.-++|.|+||+||||+++.|++.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999986
No 259
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.36 E-value=0.082 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
..+-|.||+|+||||+++.|+..++..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 467799999999999999999988643
No 260
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.36 E-value=0.34 Score=52.57 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=27.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s 364 (684)
..+++.+|+|+|||.++-.++..++.+.+.+-.+
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 4589999999999999988888777666555444
No 261
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.36 E-value=0.079 Score=54.13 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++++||+|+|||+++++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 578999999999999999999887
No 262
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.18 E-value=0.091 Score=49.63 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=17.9
Q ss_pred ceEEEEccCCCcHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTL 350 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraL 350 (684)
.-+.|+||+|+|||++++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57889999999999999964
No 263
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.18 E-value=0.49 Score=47.26 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEe
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~ 362 (684)
.-.+++||.|+|||+.+..++..+ +...+.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 455689999999999887776655 44555444
No 264
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.17 E-value=0.092 Score=49.62 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||.|+|||+|++.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999999987
No 265
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.11 E-value=0.064 Score=55.62 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC---CCEEEEeccccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLT 367 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~---~pfv~i~~s~l~ 367 (684)
..|.|.||+|+|||++|+.+++.++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4688999999999999999999875 335556665543
No 266
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.96 E-value=0.11 Score=59.14 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=30.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~i~~s~ 365 (684)
..|+|.|+||+|||++|++|++.++ .+++.+|...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 6789999999999999999999986 7788877544
No 267
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.95 E-value=0.13 Score=59.01 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=17.5
Q ss_pred ceEEEEccCCCcHHHHH-HHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLA-KTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LA-raLA~~l 354 (684)
.-.|+.||||||||+++ ..|+..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 36799999999999754 4444444
No 268
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.89 E-value=0.061 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=15.6
Q ss_pred ceEEEEccCCCcHHHHHHHHH-HHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLA-RYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA-~~l 354 (684)
..+.|+||+|+|||++++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467899999999999999999 876
No 269
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.86 E-value=0.27 Score=54.25 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
...++.|+||+|||++...+++
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 6778999999999999877764
No 270
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.84 E-value=0.099 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||+|.++|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5788999999999999999999874
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.74 E-value=0.15 Score=53.38 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=27.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
+..++++||+|+|||+++..+|..+ +.....+++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4688999999999999999999887 3455555543
No 272
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.67 E-value=0.14 Score=57.36 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+..++|+||+|+||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3678899999999999999999887
No 273
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.66 E-value=0.19 Score=49.13 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=24.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~ 363 (684)
..++++|+||+|||++|..+|... +.+.+.++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 578899999999999998875432 456655554
No 274
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.56 E-value=0.11 Score=54.72 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|+||+|+|||+|++.|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 578899999999999999999998
No 275
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.53 E-value=0.3 Score=53.60 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=28.7
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEecc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s 364 (684)
++..+++.|++|+|||+++..+|..+ +.....+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 45788899999999999999999887 4455555553
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.50 E-value=0.1 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh
Q 005670 332 NILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.+.|+||+|+|||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999887
No 277
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.42 E-value=0.11 Score=54.50 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||++.|+..+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 5788999999999999999999883
No 278
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.41 E-value=0.12 Score=50.15 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=27.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCCEEEEeccc
Q 005670 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~ 365 (684)
+|++|++|+|||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999987 77877776543
No 279
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.40 E-value=0.11 Score=54.23 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=23.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+..+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4688999999999999999999887
No 280
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.37 E-value=0.11 Score=52.76 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|+||+|+|||+|++.++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578899999999999999998755
No 281
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.32 E-value=0.1 Score=54.27 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=23.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999875
No 282
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.23 E-value=0.12 Score=52.94 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|.||||+|||++++.++..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998876
No 283
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.04 E-value=0.12 Score=55.42 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++++||+|+|||+++++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 678999999999999999999887
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.90 E-value=0.13 Score=53.48 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=28.5
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEeccc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATT 365 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~s~ 365 (684)
++..++|+||+|+|||+++..+|..+ |..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 34689999999999999999999776 33555555543
No 285
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.89 E-value=0.22 Score=48.07 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+++.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999988763
No 286
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.82 E-value=0.14 Score=54.09 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+||||+++.|+..+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5788999999999999999999985
No 287
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=90.80 E-value=1.1 Score=51.06 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh-C------CCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV-N------VPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l-~------~pfv~i~~s~ 365 (684)
.|+|+.|.||+|||.+++.+...+ . ..|+.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 699999999999999999876544 1 3488888763
No 288
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.73 E-value=0.27 Score=51.20 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEeccc
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~s~ 365 (684)
+..+++.|++|+|||+++..+|..+ +.....+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5788899999999999999999887 55666666543
No 289
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.61 E-value=0.14 Score=50.70 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.|++|+|||++++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999999984
No 290
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.56 E-value=0.07 Score=53.80 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.-|+|.|++|+|||++++.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6789999999999999999999983
No 291
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.50 E-value=0.32 Score=51.58 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
..+.|+|+||+|||+++..++..+ +..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 688999999999999999998876 444444443
No 292
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.47 E-value=0.16 Score=45.70 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...+++.|++|+|||+|..++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998764
No 293
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.28 E-value=0.31 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++++||+|+|||+|++.|++.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 688999999999999999999876
No 294
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.26 E-value=0.18 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.|++|+|||+++..+++.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999999887
No 295
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.19 E-value=0.17 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999888754
No 296
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.15 E-value=0.82 Score=52.65 Aligned_cols=18 Identities=61% Similarity=0.853 Sum_probs=16.5
Q ss_pred ceEEEEccCCCcHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAr 348 (684)
.++++.+|+|+|||+.+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 689999999999999874
No 297
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.04 E-value=0.18 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||++...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 298
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.01 E-value=0.17 Score=49.29 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=26.1
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
.-..+||.|++|+|||++|.++.+. +..++.=|.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~ 48 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDDV 48 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCE
Confidence 3479999999999999999999874 444444333
No 299
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.00 E-value=0.17 Score=45.74 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
-.+++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988754
No 300
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.96 E-value=0.18 Score=45.21 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999764
No 301
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.89 E-value=0.19 Score=48.25 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|+|++|+|||+|..++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998754
No 302
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.86 E-value=0.24 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...+++.|++|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999998754
No 303
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.85 E-value=0.15 Score=57.21 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=24.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
..++|.|.+|+|||++|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999974
No 304
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.78 E-value=0.19 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=23.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+..+.|.||+|+||||+++.||..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4688899999999999999999987
No 305
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.73 E-value=0.27 Score=56.27 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
...++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999877665544
No 306
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.70 E-value=0.12 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.|++|+|||+|++.|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999883
No 307
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.67 E-value=0.19 Score=47.81 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|.|++|+|||+|.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 578999999999999999998763
No 308
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.67 E-value=1.5 Score=50.53 Aligned_cols=18 Identities=56% Similarity=0.732 Sum_probs=16.4
Q ss_pred ceEEEEccCCCcHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAr 348 (684)
.++++.||+|+|||+++.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 689999999999999873
No 309
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.59 E-value=0.18 Score=47.94 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 578999999999999999998765
No 310
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.54 E-value=0.19 Score=49.98 Aligned_cols=32 Identities=38% Similarity=0.385 Sum_probs=27.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~ 363 (684)
..|-|+|..|||||++++.+++ +|.+++..|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 5788999999999999999998 8888865553
No 311
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.52 E-value=0.19 Score=49.66 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.-|.|.|++|+|||++++.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999884
No 312
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.51 E-value=0.18 Score=53.58 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
..+.|+||+|+|||||++.|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999998854
No 313
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.48 E-value=0.21 Score=45.18 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 314
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.43 E-value=0.21 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 578899999999999999998876
No 315
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.42 E-value=0.15 Score=54.44 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=23.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..++|.||+|+||||++++++..+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999999874
No 316
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.35 E-value=0.26 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
...|++.|++|+|||+|..++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999998865
No 317
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.10 E-value=0.16 Score=57.55 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=28.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC----CCEEEEecccc
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~----~pfv~i~~s~l 366 (684)
..+.|+|++|+||||++++|+..++ ..+..++...+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5788999999999999999999984 23444565443
No 318
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.10 E-value=0.24 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998763
No 319
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.09 E-value=0.22 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..++|.|++|+|||+|.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999753
No 320
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.03 E-value=0.16 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.|+..+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4677999999999999999998773
No 321
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.98 E-value=0.25 Score=46.66 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.3
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHH
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
+.-.++|.|++|+|||+|...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999877654
No 322
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.98 E-value=0.25 Score=46.25 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++++|++|+|||+|..++...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999987653
No 323
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.94 E-value=0.16 Score=57.00 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=26.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC--CCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~--~pfv~i~~ 363 (684)
.++++.||+|+||||++++++..+. ...+.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 5799999999999999999999884 23555543
No 324
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.84 E-value=0.22 Score=51.01 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
-++.|.||+|+|||||.++|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999887
No 325
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.84 E-value=0.24 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|++.|++|+|||+|...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998653
No 326
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.84 E-value=0.16 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||.|+|||||++.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467799999999999999999876
No 327
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.80 E-value=1.3 Score=43.57 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|+|+|++|+|||+|..+|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999998754
No 328
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.73 E-value=0.18 Score=49.69 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+.|.||.|+|||||+++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999976
No 329
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.70 E-value=0.23 Score=50.00 Aligned_cols=28 Identities=32% Similarity=0.681 Sum_probs=23.4
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 328 LEKSNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 328 ~~~~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.++..+.|.||.|+|||||.++++..+.
T Consensus 22 i~~e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGRDYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECSSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3335677999999999999999998763
No 330
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.69 E-value=1 Score=46.93 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.2
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
.++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 579999999999998764443
No 331
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.69 E-value=0.22 Score=46.46 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=20.9
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...+++.|++|+|||+|...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999888653
No 332
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.68 E-value=0.25 Score=45.15 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|...+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 6899999999999999988854
No 333
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.67 E-value=0.2 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.++++..+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4677999999999999999998763
No 334
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.65 E-value=0.26 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
-.+++.|++|+|||+|.+++...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 689999999999999999987653
No 335
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.56 E-value=0.4 Score=51.19 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=27.7
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
..|+++.||+|+|||++++.++..+ +..++.+|.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4799999999999999999987665 556666664
No 336
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.51 E-value=0.2 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.-|+|.|++|+|||++++.|++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999988
No 337
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.50 E-value=0.28 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..++|.|++|+|||+|.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999763
No 338
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.48 E-value=0.26 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|++.|++|+|||+|...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 468999999999999999998764
No 339
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.46 E-value=0.25 Score=46.10 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.8
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHH
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
+...|++.|++|+|||+|+..+...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999864
No 340
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.37 E-value=0.2 Score=46.96 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=19.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..++|.|++|+|||+|.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999876
No 341
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.34 E-value=0.27 Score=44.55 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999998753
No 342
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.34 E-value=0.28 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 343
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.32 E-value=0.28 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 344
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.18 E-value=0.28 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999988764
No 345
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.17 E-value=0.39 Score=47.75 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
.-+.|.|++|+|||++++.+++.++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 578899999999999999999999764
No 346
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.16 E-value=0.43 Score=49.77 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
.-+++.|+||+|||++|..+|..+ +.+.+.++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 578899999999999999998654 345555543
No 347
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.11 E-value=0.28 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 68999999999999999888754
No 348
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.11 E-value=0.28 Score=46.45 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|.+.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999886
No 349
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.07 E-value=0.3 Score=49.25 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.-|.|.|++|+|||++++.+++.+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999883
No 350
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.07 E-value=0.3 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998753
No 351
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.00 E-value=0.3 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|..++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998763
No 352
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.98 E-value=0.31 Score=44.08 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHH
Q 005670 332 NILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.+++.|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998654
No 353
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.95 E-value=0.29 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999875
No 354
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.90 E-value=0.2 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.++|+..+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4677999999999999999998773
No 355
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.90 E-value=0.2 Score=50.36 Aligned_cols=29 Identities=34% Similarity=0.596 Sum_probs=23.6
Q ss_pred ccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 326 VELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 326 v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+.+++ ..+.|.||.|+|||||.++|+..+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444 467799999999999999999876
No 356
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.89 E-value=0.29 Score=44.45 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999853
No 357
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.85 E-value=0.34 Score=44.04 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|..++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999865
No 358
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.74 E-value=0.43 Score=56.41 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
...++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999877665554
No 359
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.73 E-value=0.21 Score=50.46 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.|+..+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4677999999999999999998763
No 360
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.71 E-value=0.87 Score=48.09 Aligned_cols=32 Identities=38% Similarity=0.541 Sum_probs=23.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHh----CCCEEEEec
Q 005670 332 NILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~ 363 (684)
++++..|+|+|||..+-.++... +.+.+.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 78999999999999987776554 445444443
No 361
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.71 E-value=0.21 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.728 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.++..+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677999999999999999998763
No 362
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.66 E-value=0.57 Score=45.19 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+++.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 678999999999999999998876
No 363
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.62 E-value=0.3 Score=44.63 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998753
No 364
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.62 E-value=0.34 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998765
No 365
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.60 E-value=0.31 Score=49.24 Aligned_cols=23 Identities=48% Similarity=0.653 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+.|.||.|+|||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46779999999999999999986
No 366
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.59 E-value=0.22 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.++..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4677999999999999999998873
No 367
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.58 E-value=0.21 Score=49.52 Aligned_cols=24 Identities=42% Similarity=0.719 Sum_probs=21.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||.|+|||||.++++..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467799999999999999999876
No 368
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.53 E-value=0.31 Score=44.12 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.0
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
-.+++.|++|+|||+|.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 478999999999999998874
No 369
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.47 E-value=0.34 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+++.|++|+|||+|..++...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 689999999999999999987643
No 370
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.45 E-value=0.55 Score=48.63 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=27.8
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
++..+.++|++|+|||+++..+|..+ +.....+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 45688899999999999999999887 445555554
No 371
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=87.43 E-value=0.32 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|..++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 372
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.41 E-value=0.25 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|++.|++|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999888654
No 373
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.41 E-value=0.34 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
-.+++.|++|+|||+|..++...-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 689999999999999999997643
No 374
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.40 E-value=0.38 Score=45.01 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|..++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998764
No 375
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.39 E-value=0.23 Score=50.62 Aligned_cols=30 Identities=37% Similarity=0.543 Sum_probs=24.0
Q ss_pred cccccc-ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 325 ~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.+..++ ..+.|.||.|+|||||.++|+..+
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 334444 467799999999999999999876
No 376
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.31 E-value=0.23 Score=50.94 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||++.|+..+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4677999999999999999998763
No 377
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.27 E-value=0.62 Score=46.15 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=26.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh--CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV--NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l--~~pfv~i~~ 363 (684)
..+++.|.+|+|||+++..+|..+ +.....+|+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 678899999999999999999776 445555553
No 378
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.25 E-value=0.31 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
...|++.|++|+|||+|...+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999888753
No 379
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.23 E-value=0.23 Score=51.17 Aligned_cols=31 Identities=16% Similarity=0.419 Sum_probs=24.5
Q ss_pred cccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 325 ~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.+..++ ..+.|.||.|+|||||+++|+..+.
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 333444 4678999999999999999998773
No 380
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.22 E-value=1 Score=53.16 Aligned_cols=21 Identities=48% Similarity=0.607 Sum_probs=17.7
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
.++|+.||+|+|||.++-..+
T Consensus 390 ~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999875543
No 381
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.21 E-value=0.33 Score=49.59 Aligned_cols=24 Identities=46% Similarity=0.613 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||.|+|||||.+.|+...
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999999999999999864
No 382
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.20 E-value=0.23 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.|+..+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4677999999999999999998763
No 383
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.19 E-value=0.28 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||.++|+....
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4677999999999999999999873
No 384
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.19 E-value=0.32 Score=44.53 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..|++.|++|+|||+|..++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999988753
No 385
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.12 E-value=1.2 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.||+|+|||+++..+..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999996666543
No 386
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.11 E-value=0.33 Score=44.51 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999998643
No 387
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.10 E-value=0.38 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...+++.|++|+|||+|..++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998754
No 388
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.09 E-value=0.29 Score=49.08 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.|+..+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677999999999999999998763
No 389
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.02 E-value=0.24 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.++..+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4677999999999999999998763
No 390
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=87.02 E-value=0.35 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|.+.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 391
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.00 E-value=0.34 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
.-|.|.|++|+|||++++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999988
No 392
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.95 E-value=0.41 Score=47.93 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=23.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
.-|.|.|++|+|||++++.+++.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 67889999999999999999998743
No 393
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.95 E-value=0.5 Score=43.80 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=24.1
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHh
Q 005670 326 VELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 326 v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+...+.-.+|+||.|+|||++..||.-.+
T Consensus 19 i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34445678999999999999999998766
No 394
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=86.92 E-value=1.6 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..++|+||.|+|||++.+.++..
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHH
Confidence 57889999999999999998754
No 395
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.92 E-value=0.37 Score=44.75 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+++.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999998887654
No 396
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.90 E-value=0.4 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998765
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.88 E-value=0.37 Score=45.14 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 398
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.86 E-value=0.58 Score=51.34 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=30.4
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEecccc
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~s~l 366 (684)
++..++++|++|+|||+++-.||..+ +.....+++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35789999999999999999998776 556777776543
No 399
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.86 E-value=0.37 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
...+++.|++|+|||+|..++..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999988864
No 400
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.81 E-value=0.31 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.764 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||.|+|||||+++|+..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 467799999999999999999876
No 401
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.80 E-value=0.37 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 402
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.72 E-value=0.26 Score=50.86 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.|+..+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4677999999999999999998773
No 403
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.69 E-value=1.7 Score=52.13 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..++|+||.|+|||++.+.++-.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999544
No 404
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.60 E-value=0.41 Score=45.09 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|++.|++|+|||+|...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998754
No 405
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=86.59 E-value=0.52 Score=57.38 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=34.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhccccccCCCCCCCCCCCCCcccccccceEEEEccCCCcHHHHHHHHHH
Q 005670 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 278 ~VvGQe~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+|.++.++.|.+.+... . ..+.+.++|+.|+|||+||+.+++
T Consensus 129 ~~VGRe~eLeeL~elL~~~--------d-----------------------~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL--------R-----------------------PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC--------C-----------------------SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc--------C-----------------------CCeEEEEEcCCCccHHHHHHHHHH
Confidence 3589999999998887410 0 026789999999999999999885
No 406
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.59 E-value=0.37 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..++|.|+||+|||+|..++...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 407
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.58 E-value=0.4 Score=43.98 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999998754
No 408
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.57 E-value=0.32 Score=52.05 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=24.7
Q ss_pred cccccc-ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 325 ~v~~~~-~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
.+.+++ ..+.|.||+|+|||||.+.||....
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344444 4667999999999999999998873
No 409
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=86.54 E-value=0.41 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988753
No 410
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.54 E-value=0.26 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.++..+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677999999999999999998873
No 411
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.53 E-value=0.36 Score=44.73 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999988864
No 412
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=86.49 E-value=0.37 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|.+++..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999998853
No 413
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.27 E-value=0.34 Score=51.92 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||.+.||....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4677999999999999999998873
No 414
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.27 E-value=0.34 Score=51.98 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||.+.||....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4667999999999999999998873
No 415
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.26 E-value=0.34 Score=49.29 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.++|+..+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4677999999999999999998763
No 416
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.25 E-value=0.34 Score=49.40 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||.|+|||||.+.|+..+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4677999999999999999998763
No 417
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.23 E-value=0.34 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=22.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||.+.|+....
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4677999999999999999999873
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.19 E-value=0.43 Score=43.85 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999888753
No 419
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.16 E-value=0.66 Score=50.67 Aligned_cols=33 Identities=27% Similarity=0.219 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh----CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l----~~pfv~i~~ 363 (684)
.-+++.|+||+|||++|..+|... +.+.+.++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 578899999999999999987754 346666654
No 420
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=86.14 E-value=0.4 Score=44.65 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|++.|++|+|||+|..++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998764
No 421
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=86.13 E-value=0.43 Score=44.52 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|..++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998764
No 422
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.12 E-value=0.35 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||.+.||....
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4677999999999999999998873
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.04 E-value=0.46 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998764
No 424
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.01 E-value=0.41 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999888654
No 425
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=86.00 E-value=0.94 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|+|+||+|||+|..++...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998865
No 426
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.98 E-value=0.6 Score=50.41 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=27.0
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
..|++++|+||+|||++++.+...+ +.+++.+|.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4799999999999999987765543 566777775
No 427
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.98 E-value=0.4 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998654
No 428
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=85.95 E-value=1 Score=45.06 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHH-HHHHHHHHh--CCCEEEE
Q 005670 331 SNILLMGPTGSGKTL-LAKTLARYV--NVPFVIA 361 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~-LAraLA~~l--~~pfv~i 361 (684)
.-.+++||-|+|||+ |.+.+.+.. +...+.+
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 466889999999999 555554443 3444333
No 429
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.94 E-value=0.36 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||.+.||....
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4677999999999999999998873
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=85.89 E-value=0.34 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998764
No 431
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.79 E-value=0.45 Score=43.91 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 6899999999999999999874
No 432
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.73 E-value=0.34 Score=44.77 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.1
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
..+++.|++|+|||+|...+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999987765
No 433
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.72 E-value=0.48 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|++.|++|+|||+|...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 378999999999999999998754
No 434
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.68 E-value=0.46 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..|++.|++|+|||+|...+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 689999999999999999987643
No 435
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=85.51 E-value=0.31 Score=52.06 Aligned_cols=25 Identities=36% Similarity=0.716 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||.+.||....
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 4677999999999999999998873
No 436
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.44 E-value=0.47 Score=44.07 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|...+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998864
No 437
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.42 E-value=0.48 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|++.|++|+|||+|...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998753
No 438
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=85.41 E-value=0.49 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+++.|++|+|||+|...+...-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 689999999999999999987643
No 439
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.39 E-value=0.47 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
-.|+|.|++|+|||+|...+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 589999999999999999987654
No 440
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=85.34 E-value=0.68 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|++.|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999998764
No 441
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.32 E-value=0.48 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999998754
No 442
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.29 E-value=0.51 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|..++...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 68999999999999999998763
No 443
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.27 E-value=0.36 Score=49.33 Aligned_cols=24 Identities=33% Similarity=0.803 Sum_probs=21.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||.|+|||||.+.|+..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999876
No 444
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=85.26 E-value=0.78 Score=45.35 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=28.8
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhCC-CEEEEeccc
Q 005670 328 LEKSNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATT 365 (684)
Q Consensus 328 ~~~~~vLL~GPPGTGKT~LAraLA~~l~~-pfv~i~~s~ 365 (684)
.|+.-++|+|.||+||+++|+.+.+.++. .+..+.+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 35678999999999999999999987753 243445443
No 445
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=85.18 E-value=0.28 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+.|.|++|+|||+|.++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999988764
No 446
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=85.14 E-value=0.49 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998754
No 447
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.11 E-value=0.41 Score=52.93 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=22.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||.|+|||+|++.|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 578999999999999999999886
No 448
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.09 E-value=0.52 Score=49.74 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=22.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||||+|||+|.++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999999876
No 449
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.06 E-value=0.7 Score=48.66 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.+.|+||+|||+++..++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 678899999999999999998776
No 450
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=85.02 E-value=5.3 Score=48.37 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.7
Q ss_pred ceEEEEccCCCcHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKT 349 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAra 349 (684)
.++|+.+|+|+|||.++..
T Consensus 102 ~~vLV~apTGSGKTlva~l 120 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEY 120 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHH
Confidence 5899999999999998743
No 451
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=85.02 E-value=0.5 Score=44.83 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.8
Q ss_pred cceEEEEccCCCcHHHHHHHHHHHh
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
...|+|.|++|+|||+|..++...-
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3689999999999999999987643
No 452
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=84.98 E-value=0.5 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988653
No 453
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.83 E-value=0.5 Score=44.21 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=20.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|.+.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999887643
No 454
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.69 E-value=0.43 Score=51.70 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||+|+|||+|.+.|+..+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 467899999999999999999875
No 455
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.66 E-value=0.39 Score=47.38 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+.|.|+.|+||||+++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 57889999999999999999987
No 456
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.63 E-value=0.56 Score=44.76 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+++.|++|+|||+|...+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999987643
No 457
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.55 E-value=0.81 Score=48.62 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=26.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
.-++|.|+||+|||++|..+|..+ +.+...++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 578899999999999999998775 455555543
No 458
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.50 E-value=0.57 Score=44.43 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|+++|++|+|||+|..++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998753
No 459
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.41 E-value=0.55 Score=45.25 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999874
No 460
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=84.40 E-value=2.1 Score=52.63 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=17.5
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
..+|++||+|+|||.+|-..+
T Consensus 625 ~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 625 MDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CEEEEECCCCTTTHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 589999999999999875443
No 461
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.24 E-value=0.59 Score=43.57 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|...+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998874
No 462
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=84.22 E-value=0.77 Score=48.82 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
..+.|.||+|+|||+|.+.|+..+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 578899999999999999999998643
No 463
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=84.17 E-value=0.31 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.759 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|+||+|+|||+|++.|+..+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 5788999999999999999998773
No 464
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.13 E-value=0.57 Score=45.03 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..++|.|++|+|||+|...+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999998764
No 465
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=84.12 E-value=0.31 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
..+.|.||+|+|||||.+.||....
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4677999999999999999998873
No 466
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.11 E-value=0.56 Score=49.46 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=24.9
Q ss_pred ccceEEEEccCCCcHHHHHHHHHHHhCCCEEE
Q 005670 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (684)
Q Consensus 329 ~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~ 360 (684)
....++|.|++|+|||++|.++.+. +..++.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 3478999999999999999999875 444543
No 467
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.11 E-value=0.57 Score=52.31 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=21.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..++|.||+|+|||+|++.++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578899999999999999998765
No 468
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=84.10 E-value=0.58 Score=55.34 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=18.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
...+|+.||||||||+++..+..
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999987665543
No 469
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=84.02 E-value=0.4 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
..+.|.||.|+|||+|.+.|+..+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 467799999999999999999886
No 470
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=83.97 E-value=0.8 Score=44.56 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=25.7
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHhCC
Q 005670 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (684)
Q Consensus 326 v~~~~~~vLL~GPPGTGKT~LAraLA~~l~~ 356 (684)
+...+.-.+|+||.|+|||++..+|.-.++.
T Consensus 19 i~f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEeCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4445578899999999999999999887744
No 471
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.94 E-value=0.6 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.9
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998865
No 472
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=83.89 E-value=0.64 Score=48.96 Aligned_cols=38 Identities=34% Similarity=0.371 Sum_probs=28.2
Q ss_pred cccceEEEEccCCCcHHHHHHHHHHHhCCCEEEEecccc
Q 005670 328 LEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (684)
Q Consensus 328 ~~~~~vLL~GPPGTGKT~LAraLA~~l~~pfv~i~~s~l 366 (684)
.....+||.|++|+|||++|..+.+ -|..++.=|...+
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i 182 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEI 182 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEE
Confidence 3347899999999999999988765 3556665555444
No 473
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.87 E-value=0.79 Score=50.34 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
..+.|.||+|+|||+|++.|+......
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 578899999999999999999998543
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.82 E-value=0.59 Score=52.18 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=25.9
Q ss_pred ceEEEEccCCCcHHHHHHH--HHHHh--CCCEEEEeccc
Q 005670 331 SNILLMGPTGSGKTLLAKT--LARYV--NVPFVIADATT 365 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAra--LA~~l--~~pfv~i~~s~ 365 (684)
..++|.||+|+|||+|++. ++... +..-+.++..+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 6789999999999999999 45554 33455555443
No 475
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=83.77 E-value=0.62 Score=44.06 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
..+++.|++|+|||+|...+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998874
No 476
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=83.66 E-value=0.99 Score=43.83 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=23.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCCEEEE
Q 005670 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (684)
Q Consensus 333 vLL~GPPGTGKT~LAraLA~~l---~~pfv~i 361 (684)
|.|-|+-|+||||.++.|++.+ +.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788999999999999999988 4555443
No 477
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=83.65 E-value=0.38 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=10.3
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..+++.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999988864
No 478
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=83.64 E-value=1.6 Score=50.52 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.4
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHhCCC
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l~~p 357 (684)
...+|+|+.|.|||+++-.++..+...
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~~~ 219 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIAGR 219 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSSSC
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 467999999999999998887777443
No 479
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.55 E-value=0.61 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.1
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...|++.|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999988763
No 480
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=83.46 E-value=0.64 Score=44.13 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.1
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..++|.|+||+|||+|...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 481
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=83.43 E-value=0.6 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..|++.|++|+|||+|..++..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998853
No 482
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=83.43 E-value=0.61 Score=44.93 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
...|++.|++|+|||+|...+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 36899999999999999988864
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=83.37 E-value=0.66 Score=43.68 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
...|++.|++|+|||+|...+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999988864
No 484
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=83.14 E-value=0.63 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.8
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..|++.|++|+|||+|...+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 6899999999999999998853
No 485
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=83.12 E-value=0.67 Score=44.15 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..+++.|++|+|||+|...+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988753
No 486
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=82.99 E-value=0.51 Score=44.91 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
..|++.|++|+|||+|...+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999885
No 487
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=82.95 E-value=0.68 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.5
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|++.|++|+|||+|...+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 68999999999999999998653
No 488
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=82.91 E-value=0.68 Score=44.29 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred ceEEEEccCCCcHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~ 352 (684)
..|+|+|++|+|||+|..++..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 5899999999999999998874
No 489
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=82.91 E-value=0.65 Score=43.89 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=20.4
Q ss_pred cceEEEEccCCCcHHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
...+++.|++|+|||+|.+.+...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999876553
No 490
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=82.72 E-value=0.73 Score=45.15 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.8
Q ss_pred eEEEEccCCCcHHHHHHHHHHHhC
Q 005670 332 NILLMGPTGSGKTLLAKTLARYVN 355 (684)
Q Consensus 332 ~vLL~GPPGTGKT~LAraLA~~l~ 355 (684)
=|.|-|+.|+||||.++.|++.+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478899999999999999999983
No 491
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=82.71 E-value=0.97 Score=49.62 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.2
Q ss_pred ceEEEEccCCCcHHHHHHHHHHHh---CCCEEEEec
Q 005670 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~l---~~pfv~i~~ 363 (684)
.-+++.|+||+|||++|..+|... +.+.+.++.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 578999999999999999887765 456655554
No 492
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=82.68 E-value=1.4 Score=51.13 Aligned_cols=19 Identities=47% Similarity=0.574 Sum_probs=16.1
Q ss_pred cceEEEEccCCCcHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAK 348 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAr 348 (684)
...+++.||+|+|||+.|-
T Consensus 155 rk~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4689999999999999543
No 493
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.58 E-value=0.62 Score=49.71 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=23.9
Q ss_pred cccccceEEEEccCCCcHHHHHHHHHHHh
Q 005670 326 VELEKSNILLMGPTGSGKTLLAKTLARYV 354 (684)
Q Consensus 326 v~~~~~~vLL~GPPGTGKT~LAraLA~~l 354 (684)
+..++.-.+|+||.|+|||++..+|+-.+
T Consensus 19 i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 19 IEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44445678899999999999999998665
No 494
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=82.55 E-value=0.76 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.2
Q ss_pred cceEEEEccCCCcHHHHHHHHHH
Q 005670 330 KSNILLMGPTGSGKTLLAKTLAR 352 (684)
Q Consensus 330 ~~~vLL~GPPGTGKT~LAraLA~ 352 (684)
...|++.|++|+|||+|..++..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999988754
No 495
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=82.54 E-value=1.3 Score=53.88 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.2
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
..++|+||.|+|||++.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 578899999999999999984
No 496
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=82.39 E-value=1.1 Score=51.11 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=19.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
.++|+.+|+|+|||..+...+..
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~ 45 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKD 45 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH
Confidence 57999999999999988776654
No 497
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=82.36 E-value=0.57 Score=43.72 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.0
Q ss_pred ceEEEEccCCCcHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLA 351 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA 351 (684)
..+++.|++|+|||+|..++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999988873
No 498
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=82.21 E-value=0.63 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
-.++|.||+|+|||+|.+.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46799999999999999998753
No 499
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=82.19 E-value=0.78 Score=44.37 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.7
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
..|+|.|++|+|||+|...+...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 500
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=82.12 E-value=0.79 Score=43.74 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred ceEEEEccCCCcHHHHHHHHHHH
Q 005670 331 SNILLMGPTGSGKTLLAKTLARY 353 (684)
Q Consensus 331 ~~vLL~GPPGTGKT~LAraLA~~ 353 (684)
-.|++.|++|+|||+|...+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999888753
Done!