Query 005673
Match_columns 684
No_of_seqs 265 out of 950
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 12:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2189 Vacuolar H+-ATPase V0 100.0 3E-192 6E-197 1583.1 56.9 629 52-682 170-826 (829)
2 PF01496 V_ATPase_I: V-type AT 100.0 2E-133 3E-138 1183.4 12.4 612 53-677 141-759 (759)
3 PRK05771 V-type ATP synthase s 100.0 4.1E-87 8.9E-92 776.3 51.4 500 53-681 143-645 (646)
4 COG1269 NtpI Archaeal/vacuolar 100.0 2.2E-87 4.8E-92 774.7 44.9 470 100-683 186-658 (660)
5 PF05767 Pox_A14: Poxvirus vir 68.6 25 0.00055 31.0 7.2 56 413-468 13-68 (92)
6 PF01496 V_ATPase_I: V-type AT 58.8 7.5 0.00016 47.2 3.2 67 208-274 146-219 (759)
7 KOG2189 Vacuolar H+-ATPase V0 48.8 2.4E+02 0.0052 34.3 13.0 129 142-274 91-251 (829)
8 PRK10692 hypothetical protein; 41.6 96 0.0021 27.3 6.2 48 414-471 13-60 (92)
9 PF10762 DUF2583: Protein of u 35.8 1.2E+02 0.0025 26.6 5.8 48 414-471 13-60 (89)
10 KOG4098 Molecular chaperone Pr 34.2 97 0.0021 29.3 5.5 40 185-226 46-86 (140)
11 PF06570 DUF1129: Protein of u 33.9 5E+02 0.011 26.1 12.7 19 276-294 83-101 (206)
12 PHA02898 virion envelope prote 32.7 1.9E+02 0.004 25.6 6.6 46 413-458 13-58 (92)
13 PF04518 Effector_1: Effector 32.4 95 0.0021 34.6 6.1 63 161-225 239-311 (379)
14 PF11348 DUF3150: Protein of u 32.0 1.7E+02 0.0036 31.0 7.7 64 114-183 55-118 (257)
15 PF06103 DUF948: Bacterial pro 31.0 3.5E+02 0.0075 23.3 8.7 30 145-174 35-64 (90)
16 PF11068 YlqD: YlqD protein; 30.6 3.5E+02 0.0075 25.7 8.8 50 140-189 17-70 (131)
17 PF12725 DUF3810: Protein of u 29.1 1.1E+02 0.0023 33.4 5.8 58 292-352 23-81 (318)
18 PF08946 Osmo_CC: Osmosensory 26.4 1.3E+02 0.0029 23.2 4.1 29 144-172 13-41 (46)
19 KOG2264 Exostosin EXT1L [Signa 25.9 1.3E+02 0.0028 35.0 5.8 55 118-172 82-136 (907)
20 COG2852 Very-short-patch-repai 25.5 2.7E+02 0.0059 26.3 6.9 66 67-136 26-102 (129)
21 KOG2391 Vacuolar sorting prote 25.0 1.9E+02 0.0041 31.7 6.6 19 208-226 306-324 (365)
22 PF11221 Med21: Subunit 21 of 25.0 2.7E+02 0.0059 26.5 7.2 37 138-174 99-135 (144)
23 PHA02148 hypothetical protein 24.3 3.1E+02 0.0067 24.4 6.6 36 140-175 34-69 (110)
24 PF01102 Glycophorin_A: Glycop 23.9 66 0.0014 30.1 2.6 13 286-298 67-79 (122)
25 PF14389 Lzipper-MIP1: Leucine 23.5 2.8E+02 0.006 24.3 6.4 55 118-172 28-83 (88)
26 TIGR01069 mutS2 MutS2 family p 23.4 1.4E+02 0.0031 36.5 6.1 10 62-71 439-448 (771)
27 PRK10884 SH3 domain-containing 23.1 4.2E+02 0.0092 27.0 8.5 35 143-177 93-127 (206)
28 PF14817 HAUS5: HAUS augmin-li 23.1 1.2E+02 0.0027 36.1 5.3 11 73-83 26-36 (632)
29 PF10198 Ada3: Histone acetylt 22.7 3.4E+02 0.0074 25.7 7.3 46 114-161 5-51 (131)
30 MTH00173 ATP6 ATP synthase F0 22.7 5.2E+02 0.011 26.7 9.3 74 570-652 143-216 (231)
31 TIGR03144 cytochr_II_ccsB cyto 21.9 8.9E+02 0.019 25.0 12.0 23 285-307 90-112 (243)
32 PF03670 UPF0184: Uncharacteri 21.8 5.3E+02 0.012 22.6 7.5 40 142-181 25-64 (83)
33 COG3630 OadG Na+-transporting 21.4 2.7E+02 0.0059 24.4 5.7 20 631-651 22-41 (84)
34 PF05377 FlaC_arch: Flagella a 21.3 4.5E+02 0.0097 21.3 7.3 45 146-194 3-47 (55)
35 PRK15028 cytochrome bd-II oxid 21.2 7.1E+02 0.015 27.9 10.5 67 283-354 72-142 (378)
36 PHA02680 ORF090 IMV phosphoryl 20.7 5.2E+02 0.011 22.8 7.2 44 413-456 13-57 (91)
37 PF04123 DUF373: Domain of unk 20.4 3.5E+02 0.0076 29.9 7.8 85 265-351 150-243 (344)
38 PF07889 DUF1664: Protein of u 20.3 5.3E+02 0.012 24.3 7.9 28 146-173 46-73 (126)
39 PF04111 APG6: Autophagy prote 20.2 3.8E+02 0.0083 29.1 8.0 27 145-171 52-78 (314)
No 1
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=100.00 E-value=2.7e-192 Score=1583.09 Aligned_cols=629 Identities=53% Similarity=0.925 Sum_probs=577.0
Q ss_pred CcceeEEEEEEeCCcHHHHHHHHHHHhcCceeeeecCCCcccccccccceeeeEEEEEEEeChhhHHHHHHHHhhcCCeE
Q 005673 52 QSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANC 131 (684)
Q Consensus 52 ~~~l~~v~G~I~~e~~~~fer~L~R~~rgn~~~~~~~i~~~~~d~~~~~~~~k~vfiv~~~g~~~~~kv~kI~~s~~~~~ 131 (684)
+.+++|++|+|+|||.++|||+|||+||||+|+|++++|+++.||+||++++|+|||||++|+++++||+|||++|+|+.
T Consensus 170 ~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~~Geql~~kIkKIcd~f~a~~ 249 (829)
T KOG2189|consen 170 GLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFFQGEQLKQKIKKICDGFGATL 249 (829)
T ss_pred cccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEeecHHHHHHHHHHHhccCcEe
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCceEEEEEe
Q 005673 132 YPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGW 211 (684)
Q Consensus 132 ~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~Ln~~~~~~t~~~~i~eGW 211 (684)
||||+++.+|++++.+++.||+||+.++++|+++|.++|..+++++..|..+++|||+|||+||+|++|+|+||+++|||
T Consensus 250 yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K~KaIyhtLN~fn~Dvt~KCLIaE~W 329 (829)
T KOG2189|consen 250 YPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRKEKAIYHTLNMFNFDVTQKCLIAEGW 329 (829)
T ss_pred ecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCccccCceEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHHHhhhccCCCceeeEEeecCCCCCCCcccccccchhHHHHHHHhhcCCCCCccCCchhHHHHHHHHHH
Q 005673 212 CPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFA 291 (684)
Q Consensus 212 vP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~~~pPT~~~nnkf~~~Fq~iv~~Yg~P~Y~EidPt~~~~itFpf~FG 291 (684)
||++|++++|++|++.++.+|++|+++++.+++++.||||+||||||++||+|||+||+++|+|+||+|+|+|||||+||
T Consensus 330 ~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTNKFT~~FQ~IvDaYGVa~YrEvNPa~yTiITFPFLFA 409 (829)
T KOG2189|consen 330 CPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTNKFTAGFQNIVDAYGVASYREVNPAPYTIITFPFLFA 409 (829)
T ss_pred cchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcchhhHHHHHHHHhcccccccccCCCceeEeehHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHhhccccch-hhHHHhhhhHHHHHHHHhHHHHHHHHHhcccccccccccCCccccccC
Q 005673 292 VMFGDWGHGICLLLGALVLIARERKLGNQKL-GSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRD 370 (684)
Q Consensus 292 ~MfGD~GhGlll~l~~l~l~~~~~~l~~~~~-~~~~~~~~~gryilllmGi~si~~G~lyg~~Fg~~~~~fg~s~~~~~~ 370 (684)
+||||+|||++|+++|+||+++|||+.+++. +||++|+|+||||+++||+|||||||||||+||+|+++|| |+|.++.
T Consensus 410 VMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRYIIlLMGlFSiYTGliYND~FSks~niFg-S~W~~~~ 488 (829)
T KOG2189|consen 410 VMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRYIILLMGLFSIYTGLIYNDFFSKSMNIFG-SSWSNPY 488 (829)
T ss_pred HHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHhhhhhhhccccccccc-CcccCcc
Confidence 9999999999999999999999999988874 6999999999999999999999999999999999999999 9999986
Q ss_pred CCC----CCccc---ccccccCCCCCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchh
Q 005673 371 TTC----SDAYT---AGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIR 443 (684)
Q Consensus 371 ~~~----~~~~~---~~~~~~~~~ypfgldp~w~~~~n~l~f~ns~kMklSiilGv~hm~~G~~l~~~n~~~~~~~~~~~ 443 (684)
+.. ++... .+.....+|||||+||+||.++|+|+|.||+|||||||+|++||+||+++++.|+++||++.|++
T Consensus 489 ~~~~~~~~e~~~~p~~~~~~~~gpYPfGvDPiW~~a~N~L~FLNS~KMKmSIIlGi~hM~fGv~lS~~N~~~Fk~~~~I~ 568 (829)
T KOG2189|consen 489 NVTAVLCSEALLTPEIGGAKFGGPYPFGVDPIWHLADNKLSFLNSMKMKMSIILGIIHMTFGVILSVFNHIYFKSKLDII 568 (829)
T ss_pred ccchhccccccccCCCCcccccCCCCCcCChhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhee
Confidence 532 22211 12122356999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh-----cC-CCchHHHHHHHHhcCCCCCCCccccccCchHHHHHHHHHHHHhhhh
Q 005673 444 YQFVPQLIFLNSLFGYLSLLIIIKWC-----TG-SQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPW 517 (684)
Q Consensus 444 ~~~ip~~lfl~~~fgyl~~lii~kw~-----~~-~~p~ll~~li~m~l~p~~~~~~~~l~~gq~~vq~~ll~ia~~~vp~ 517 (684)
++||||++||.|+||||+++|+|||| ++ |+||+|+++||||++|+...+ .++|+||..+|.+++++|++||||
T Consensus 569 ~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~~~~~aPslLi~lInMFl~~~~~~~-~~lyp~Q~~vQ~~ll~~Al~cVPw 647 (829)
T KOG2189|consen 569 LVFIPQLIFLLSLFGYLVFLIIYKWLVFWAKTSNCAPSLLIMLINMFLFPGTDAG-FQLYPGQKQVQLILLVLALVCVPW 647 (829)
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCchHHHHHHHHHhCCCCCCc-cccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 44 699999999999999987543 289999999999999999999999
Q ss_pred hccchhHHHhhhhhcc----ccCccccccCCCccccC-------CCCCccccCCCCCchhHHHHHHHHHHHHHhhhhhhh
Q 005673 518 MLFPKPFILRKLHTER----FQGRTYGILGTSEMDLE-------VEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSN 586 (684)
Q Consensus 518 ml~~kp~~l~~~~~~~----~~g~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~ge~~i~q~i~tiE~vlg~isn 586 (684)
||++||++++++|+++ ..++.++.....++... +..+.++++++++++||+||||+||||||||||+||
T Consensus 648 mLl~KPl~l~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fseI~iHQaIHTIEf~LgcVSh 727 (829)
T KOG2189|consen 648 MLLGKPLYLRRRHKNRLRERHQGQSAGRLDSTDGSVHGPTSDAEDGGGVGDGEEEEFEFSEIFIHQAIHTIEFVLGCVSH 727 (829)
T ss_pred HHhcchHHHHHHhhhccccccccchhcccccccccccCCccccccCCCCCCCCcCccchhhHHhhhhhhhhhhhhccccc
Confidence 9999999999888764 22223332222111100 011112246667899999999999999999999999
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhheecccCc
Q 005673 587 TASYLRLWALSLAHSELSTVFYEKVLLLAWGYD---NLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKF 663 (684)
Q Consensus 587 t~SYlRL~ALsLAha~La~v~~~m~~~~~~~~~---~~~~~~~g~~i~~~~~~~ill~me~LsaflHaLRLh~VEFfsKF 663 (684)
||||||||||||||||||+|+|+|++.++++.. |.+++++.+.+|+++|++||++||||||||||||||||||||||
T Consensus 728 TASYLRLWALSLAHAQLSeVLW~Mvl~~g~~~~~~~g~i~~~~if~~f~~lTv~ILv~MEGLSAfLHaLRLHWVEFqsKF 807 (829)
T KOG2189|consen 728 TASYLRLWALSLAHAQLSEVLWTMVLRIGLGLGGYVGVIGLVALFGVFAVLTVAILVLMEGLSAFLHALRLHWVEFQSKF 807 (829)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999998887633 33556667789999999999999999999999999999999999
Q ss_pred cccCCcccccccccccccc
Q 005673 664 YHGDGYKFRPFSFALINDE 682 (684)
Q Consensus 664 Y~G~G~~F~Pf~~~~~~~~ 682 (684)
|+|+||+|+||+|+.+.++
T Consensus 808 y~G~Gy~F~PFsF~~~~~~ 826 (829)
T KOG2189|consen 808 YEGTGYKFEPFSFKLILDE 826 (829)
T ss_pred cCCCCcccccceeehhhhh
Confidence 9999999999999988764
No 2
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=100.00 E-value=1.6e-133 Score=1183.36 Aligned_cols=612 Identities=43% Similarity=0.742 Sum_probs=156.8
Q ss_pred cceeEEEEEEeCCcHHHHHHHHHHHhcCceeeeecCCCcccccccccceeeeEEEEEEEeChhhHHHHHHHHhhcCCeEe
Q 005673 53 SGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCY 132 (684)
Q Consensus 53 ~~l~~v~G~I~~e~~~~fer~L~R~~rgn~~~~~~~i~~~~~d~~~~~~~~k~vfiv~~~g~~~~~kv~kI~~s~~~~~~ 132 (684)
.++++++|+|++++.++|+|.+||+++||+|++..++++...|+. +.++|++|+|++++++.+++++|||+++||++|
T Consensus 141 ~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~--e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~ 218 (759)
T PF01496_consen 141 LNLGFIAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPK--EEVEKEVFVVFFSGKELEEKVKKILRSFGFERY 218 (759)
T ss_dssp -----------HHHHHHHHHHHHHHHTT-----S------EEEE---EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B-
T ss_pred eeeeEEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeeccccccc--ceeeeeeEEEEEEchhhHHHHHHHhhccCceec
Confidence 456789999999999999999999999999999999998888876 677889999999999999999999999999999
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCceEEEEEee
Q 005673 133 PVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWC 212 (684)
Q Consensus 133 ~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~Ln~~~~~~t~~~~i~eGWv 212 (684)
++|+..+++++.++++++++++++++++++++++++.+++..+.+..|+..+++|+++|+++|++..+.+ ++++++|||
T Consensus 219 ~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~GWv 297 (759)
T PF01496_consen 219 DLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKFASTET-NVFILEGWV 297 (759)
T ss_dssp ---GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----SEEEEEEE
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cEEEEEEec
Confidence 9999888999999999999999999999999999999999999999999999999999999997765444 899999999
Q ss_pred ecccHHHHHHHHHhhhccCCCceeeEEeecCCCCCCCcccccccchhHHHHHHHhhcCCCCCccCCchhHHHHHHHHHHH
Q 005673 213 PIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAV 292 (684)
Q Consensus 213 P~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~~~pPT~~~nnkf~~~Fq~iv~~Yg~P~Y~EidPt~~~~itFpf~FG~ 292 (684)
|++++++++++|++.+......+....++++++++|||++|||+|++|||.||+|||+|+|+|+|||+++++||||||||
T Consensus 298 P~~~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~pPt~lknn~~~~pFe~iv~~Yg~P~Y~EiDPt~~~ai~fp~fFG~ 377 (759)
T PF01496_consen 298 PEKDVEELKKALEEATDGSEYSVPSIEEEPEEEEEPPTKLKNNKFTKPFEMIVDMYGLPKYREIDPTPFMAITFPFFFGM 377 (759)
T ss_dssp -TTTHHHHHHT--SS-EEEE------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhhccccccccccccccccccCCCCeeecCchhhhHHHHHHHhcCCCCCCccccchHHHHHHHHHHHH
Confidence 99999999999998776543333444555667889999999999999999999999999999999999999999999999
Q ss_pred HhcchhHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhHHHHHHHHhHHHHHHHHHhcccccccccccCCccccccCCC
Q 005673 293 MFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTT 372 (684)
Q Consensus 293 MfGD~GhGlll~l~~l~l~~~~~~l~~~~~~~~~~~~~~gryilllmGi~si~~G~lyg~~Fg~~~~~fg~s~~~~~~~~ 372 (684)
||||+|||++|+++|++++++.++.++++ +|+++|++.+||++++||++|||||+|||||||.++++|+ +.|.++...
T Consensus 378 MfGD~GyGlll~l~~l~l~~~~~~~~~~~-~e~~~~~~~~~~il~~~gi~si~~G~iyg~~FG~~~~~f~-~~~~~~~~~ 455 (759)
T PF01496_consen 378 MFGDAGYGLLLLLFGLLLIKKFKKLKKMK-NEIFNMLFKLRYILLLMGISSIIFGFIYGSFFGDSLNIFG-SGWNWPMNI 455 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHHHHhccccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCcchhcC-ccccccccc
Confidence 99999999999999999998887766655 8999999999999999999999999999999999999999 888775321
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHH
Q 005673 373 CSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIF 452 (684)
Q Consensus 373 ~~~~~~~~~~~~~~~ypfgldp~w~~~~n~l~f~ns~kMklSiilGv~hm~~G~~l~~~n~~~~~~~~~~~~~~ip~~lf 452 (684)
...... ...+..++||||+||.|+.+.|++.|.||++|++||++|++||++|++++++|++++|++.|++++++||++|
T Consensus 456 ~~~~~~-~~~~~~~~yp~g~dp~~~~~~n~l~f~ns~~m~~SiiiGvi~m~~G~~l~~~n~i~~~~~~d~~~~~~~~~~~ 534 (759)
T PF01496_consen 456 KEGESI-TLAPSVGPYPFGIDPIWNPATNELLFLNSFKMKLSIIIGVIHMLFGLILKIINNIRFKDKIDIFFAFIPQLLF 534 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCcee-eccCccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhcchHHHH
Confidence 111100 0011124899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC------CCchHHHHHHHHhcCCCCCCCccccccCchHHHHHHHHHHHHhhhhhccchhHHH
Q 005673 453 LNSLFGYLSLLIIIKWCTG------SQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFIL 526 (684)
Q Consensus 453 l~~~fgyl~~lii~kw~~~------~~p~ll~~li~m~l~p~~~~~~~~l~~gq~~vq~~ll~ia~~~vp~ml~~kp~~l 526 (684)
+.++||||+++|++||++. ++|++++++|+|++.|+.. .++|+||..+|.++++++++||||||+.||+++
T Consensus 535 ~~~l~Gyl~~li~~kw~~~~~~~~~~~p~il~~li~m~l~~~~~---~~~~~~q~~~~~~l~~~~~~~vp~~l~~~p~~~ 611 (759)
T PF01496_consen 535 LISLFGYLVFLIIYKWLTPWFADSICAPSILIGLINMFLFPGTV---QPLYPGQSTVQVILLLIALISVPWMLLPKPLIL 611 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCchHHHHHHHhhcCCCCh---hhhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999963 5799999999999999754 789999999999999999999999999999999
Q ss_pred hhhhhccccCccccccCCCccccCCCCCccccCCCCCchhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhHHHHHH
Q 005673 527 RKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTV 606 (684)
Q Consensus 527 ~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ge~~i~q~i~tiE~vlg~isnt~SYlRL~ALsLAha~La~v 606 (684)
++++++.... .+...+ ++.+... ..++++++++++||++|||+||+||+|+|++|||+||+|||||||||++||.|
T Consensus 612 ~~~~~~~~~~--~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~sy~Rl~a~~la~~~l~~~ 687 (759)
T PF01496_consen 612 KRKHKKKQEK--EDLLEE-EEEESES-QEDEEEHEEFDFGEIFIHQGIETIEFVLGCISNTLSYLRLWALSLAHAQLSEV 687 (759)
T ss_dssp -----------------------------------------------------SSSTTTTCHHHHHCHHHHCHHHHCCS-
T ss_pred HHHhhhhccc--cccccc-ccccccc-ccccccccchhHHHHHHHHHHHHHHHHHhhhcchHhHHHHHHHhhhHHHHHHH
Confidence 8777653211 111111 1111111 22223456779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhchh-HHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhheecccCccccCCccccccccc
Q 005673 607 FYEKVLLLAWGYDN-LVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFA 677 (684)
Q Consensus 607 ~~~m~~~~~~~~~~-~~~~~~g~~i~~~~~~~ill~me~LsaflHaLRLh~VEFfsKFY~G~G~~F~Pf~~~ 677 (684)
||.|+...+.+.++ +++.++++++|+++|++++++||+|+||||+|||||||||||||+|+||+|+||+++
T Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lRL~~~E~~~kfy~g~g~~f~p~~~~ 759 (759)
T PF01496_consen 688 FNEMALMLGLSSGGVPIAGIIGFIIIAILGHAILIGMEGLSAFLHALRLHWVEFFSKFYEGGGRPFEPFSFK 759 (759)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCeecCCCCCC
Confidence 99999877755554 555667778888889999999999999999999999999999999999999999985
No 3
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=100.00 E-value=4.1e-87 Score=776.32 Aligned_cols=500 Identities=22% Similarity=0.324 Sum_probs=380.5
Q ss_pred cceeEEEEEEeCCcHHHHHHHHHHHhcCceeeeecCCCcccccccccceeeeEEEEEEEeChhhHHHHHHHHhhcCCeEe
Q 005673 53 SGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCY 132 (684)
Q Consensus 53 ~~l~~v~G~I~~e~~~~fer~L~R~~rgn~~~~~~~i~~~~~d~~~~~~~~k~vfiv~~~g~~~~~kv~kI~~s~~~~~~ 132 (684)
..+.+..|++++++.++.+ ..... ....+. .+.+++++++++..++..+++.++|++++++++
T Consensus 143 ~~~~~~~G~i~~~~~~~~~-----~~~~~----------~~~~~~--~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~ 205 (646)
T PRK05771 143 KYVSVFVGTVPEDKLEELK-----LESDV----------ENVEYI--STDKGYVYVVVVVLKELSDEVEEELKKLGFERL 205 (646)
T ss_pred CcEEEEEEEecchhhhhHH-----hhccC----------ceEEEE--EecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEe
Confidence 4788999999998876521 10111 111111 123345667666777788999999999999999
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCceEEEEEee
Q 005673 133 PVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWC 212 (684)
Q Consensus 133 ~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~Ln~~~~~~t~~~~i~eGWv 212 (684)
++|+ .+.+++.++++++|+++++++++++++++++........+..|+..+..++..+++++++ ..|+++++++|||
T Consensus 206 ~~p~-~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~t~~~~~l~GWv 282 (646)
T PRK05771 206 ELEE-EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKF--LKTDKTFAIEGWV 282 (646)
T ss_pred cCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCcEEEEEEEe
Confidence 9999 889999999999999999999999999999999888888888999999999999999855 5689999999999
Q ss_pred ecccHHHHHHHHHhhhccCCCceeeEEeec-CCCCCCCcccccccchhHHHHHHHhhcCCCCCccCCchhHHHHHHHHHH
Q 005673 213 PIFAKAQIQEVLQRATFDSNSQVGTIFHVM-DSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFA 291 (684)
Q Consensus 213 P~~~~~~i~~~L~~~~~~~~~~v~~~~~~~-~~~~~pPT~~~nnkf~~~Fq~iv~~Yg~P~Y~EidPt~~~~itFpf~FG 291 (684)
|+++++++++++++...+ .+.....++ +++++|||++|||+|++|||.+|+|||+|+|+|+|||+++++|||+|||
T Consensus 283 P~~~~~~l~~~l~~~~~~---~~~v~~~~~~~~~~~~Pt~l~N~~~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFG 359 (646)
T PRK05771 283 PEDRVKKLKELIDKATGG---SAYVEFVEPDEEEEEVPTKLKNPKFIKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFG 359 (646)
T ss_pred ehhHHHHHHHHHHHhcCC---cEEEEEeCCCCcCCCCCEEeeCCchhhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHH
Confidence 999999999999986533 233344455 4568999999999999999999999999999999999999999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhHHHHHHHHhHHHHHHHHHhcccccccccccCCccccccCC
Q 005673 292 VMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDT 371 (684)
Q Consensus 292 ~MfGD~GhGlll~l~~l~l~~~~~~l~~~~~~~~~~~~~~gryilllmGi~si~~G~lyg~~Fg~~~~~fg~s~~~~~~~ 371 (684)
|||||+|||++++++|++++++.+|. + +++...++++++||++||+||++||||||.++..++ +.|.
T Consensus 360 mM~gD~GyGLil~l~~~~l~~~~~k~-----~---~~~~~~~~il~~~gi~sii~G~lyG~fFG~~~~~~~-~~~~---- 426 (646)
T PRK05771 360 MMLGDAGYGLLLLLIGLLLSFKLKKK-----S---EGLKRLLKILIYLGISTIIWGLLTGSFFGFSLPIFL-PGGY---- 426 (646)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcccc-----c---HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcccccc-cccc----
Confidence 99999999999999999887654321 1 123344789999999999999999999998776554 2111
Q ss_pred CCCCcccccccccCCCCCCC-CCCCCCCCCCCccccch-hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhH
Q 005673 372 TCSDAYTAGLVKYREPYPFG-VDPSWRGSRSELPFLNS-LKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQ 449 (684)
Q Consensus 372 ~~~~~~~~~~~~~~~~ypfg-ldp~w~~~~n~l~f~ns-~kMklSiilGv~hm~~G~~l~~~n~~~~~~~~~~~~~~ip~ 449 (684)
++.. .+|.|+ +.+ ++ .+|++|+++|++||++|++++++|++++|++.+++++.+||
T Consensus 427 ----------------~~~~~~~~~~~-~~~-----~~~~~l~lsl~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~~w 484 (646)
T PRK05771 427 ----------------LELPEGYPSLS-TEN-----DVMTILIISLLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGW 484 (646)
T ss_pred ----------------ccccCCccccC-CCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122 233333 222 22 26899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCCccccccCchHHHHHHHHHHHHhhhhhccchhHHHhhh
Q 005673 450 LIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKL 529 (684)
Q Consensus 450 ~lfl~~~fgyl~~lii~kw~~~~~p~ll~~li~m~l~p~~~~~~~~l~~gq~~vq~~ll~ia~~~vp~ml~~kp~~l~~~ 529 (684)
++|+.|++.++...+. ...+. .+. ..+...+++++++++ ++. ..+
T Consensus 485 ~l~~~g~~~~~~~~~~------------------~~~~~--------~~~-~~~~~~~~~~g~~~~---~~~-----~~~ 529 (646)
T PRK05771 485 LLILLGILLIVLGGFG------------------LVVGL--------GPL-GLIGKYLIIGGVVLI---ILG-----EGI 529 (646)
T ss_pred HHHHHHHHHHHHhhhh------------------hhccc--------hHH-HHHHHHHHHHHHHHH---HHh-----cch
Confidence 9998887544321100 00000 000 011112222222221 110 011
Q ss_pred hhccccCccccccCCCccccCCCCCccccCCCCCchhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhHHHHHHHHH
Q 005673 530 HTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYE 609 (684)
Q Consensus 530 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ge~~i~q~i~tiE~vlg~isnt~SYlRL~ALsLAha~La~v~~~ 609 (684)
+.+ +.+..+. +.+.+| +++++|||+||+||+|++|||+.||.|||.
T Consensus 530 ~~~-------------------------------~~~~~~~--~~~~~~-~~~~~~d~lSY~RL~AlgLa~~~ia~~~n~ 575 (646)
T PRK05771 530 DGK-------------------------------SLGGALG--GLGLYE-ITGYLGDVLSYARLMALGLAGAGIAMAFNL 575 (646)
T ss_pred hcc-------------------------------ccchhhh--hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0111112 455666 455999999999999999999999999999
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhheecccCccccCCccccccccccccc
Q 005673 610 KVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALIND 681 (684)
Q Consensus 610 m~~~~~~~~~~~~~~~~g~~i~~~~~~~ill~me~LsaflHaLRLh~VEFfsKFY~G~G~~F~Pf~~~~~~~ 681 (684)
|+.+++. ..++++.++++++++++|+ +|++||+|++|||+|||||||||||||+|+|++|+||+.++.+.
T Consensus 576 la~~~~~-~~~~~~~i~~ili~v~Gh~-~ni~L~~L~~~vh~lRL~yvEff~kfyeg~G~~f~Pf~~~~ky~ 645 (646)
T PRK05771 576 MAGLLPP-SIGVIGIIVGIIIFIFGHL-LNIALSILGAFVHGLRLHYVEFFGKFYEGGGKKFNPFKAIRKYT 645 (646)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhccCCCeecCCcccccccC
Confidence 9976643 2356666778888877776 58999999999999999999999999999999999999887654
No 4
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=100.00 E-value=2.2e-87 Score=774.69 Aligned_cols=470 Identities=30% Similarity=0.462 Sum_probs=406.4
Q ss_pred ceeeeEEEEEEEeChhhHHHHHHHHhhcCCeEeeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 100 EMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTK 179 (684)
Q Consensus 100 ~~~~k~vfiv~~~g~~~~~kv~kI~~s~~~~~~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~ 179 (684)
+..++.+++|+.++++...++++++++.+++++++|+.+..+.+.+.++++++++++.++++++++.+.+.++++..+..
T Consensus 186 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~ 265 (660)
T COG1269 186 ENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLA 265 (660)
T ss_pred hccccceEEEEEecccchHHHHHHHHhCCcEEeeccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999999999999998777999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCceEEEEEeeecccHHHHHHHHHhhhccCCCceeeEEeecCCC---CCCCccccccc
Q 005673 180 WMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSM---ESPPTYFRTNR 256 (684)
Q Consensus 180 ~~~~v~kekaiy~~Ln~~~~~~t~~~~i~eGWvP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~---~~pPT~~~nnk 256 (684)
|+..+..|+.+++.++.++ .|++++++|||||++++++++++++++++. ...++..+++ ++|||++|||+
T Consensus 266 ~~~~l~~e~~~~~~~~~~~--~t~~~~~~eGWvP~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~e~~Pt~l~n~~ 338 (660)
T COG1269 266 VREILEIEKALGDVLSKLA--RTEYTLAIEGWVPADEVEKLKKIINRATGG-----AAYFEVSETDEDKEEVPTKLRNPK 338 (660)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccceEEEEEEeccHHHHHHHHHHHHHhcCC-----ceEEEeecCCCccCCCCEeecCCc
Confidence 9999999999999998664 566899999999999999999999997652 2456666555 79999999999
Q ss_pred chhHHHHHHHhhcCCCCCccCCchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhHHHHH
Q 005673 257 FTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVL 336 (684)
Q Consensus 257 f~~~Fq~iv~~Yg~P~Y~EidPt~~~~itFpf~FG~MfGD~GhGlll~l~~l~l~~~~~~l~~~~~~~~~~~~~~gryil 336 (684)
|++|||.+|+|||+|+|+|+|||+++++|||+|||+||||+|||++++++|++++++.++...+..+++ -.++
T Consensus 339 ~i~~Fe~l~emY~iPkY~EidPt~~~a~~Fp~fFG~M~gD~gyGlll~l~sl~l~~~~~~~~~~~~~~l-------~~~~ 411 (660)
T COG1269 339 FISPFESLTEMYGIPKYGEIDPTPFLALFFPLFFGIMFGDLGYGLLLFLISLLLLRYFKKRLPEGLKKL-------GKIL 411 (660)
T ss_pred ccchHHHHHHHhcCCCCCCcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccccchhHHHH-------HHHH
Confidence 999999999999999999999999999999999999999999999999999999988664222333333 2478
Q ss_pred HHHhHHHHHHHHHhcccccccccccCCccccccCCCCCCcccccccccCCCCCCCCCCCCCCCCCCccccchhHHHHHHH
Q 005673 337 LLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSIL 416 (684)
Q Consensus 337 llmGi~si~~G~lyg~~Fg~~~~~fg~s~~~~~~~~~~~~~~~~~~~~~~~ypfgldp~w~~~~n~l~f~ns~kMklSii 416 (684)
+++|++|++||++||+|||.... ...+|++++..||...+.+.+ +++|++|++
T Consensus 412 ~~~~i~t~i~G~l~g~~fG~~~~-------------------------~~~~p~~~~~~~~~~~~~~~~--~~~m~~sl~ 464 (660)
T COG1269 412 LYLGISTIIWGFLYGEFFGPAVL-------------------------LSTLPIGLLFVYHGLDEGLLF--SNILILSLL 464 (660)
T ss_pred HHHHHHHHHHHHHhccccCCccc-------------------------cccCCcccccccccccchhhH--HHHHHHHHH
Confidence 99999999999999999985211 115788899999998887777 778999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCCcccc
Q 005673 417 LGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENEL 496 (684)
Q Consensus 417 lGv~hm~~G~~l~~~n~~~~~~~~~~~~~~ip~~lfl~~~fgyl~~lii~kw~~~~~p~ll~~li~m~l~p~~~~~~~~l 496 (684)
+|++||++|++++++|.++.+++.++ ++|+++++.+++|++.+++.++|+. |.++++.++|+..++..
T Consensus 465 iG~~hl~~G~~lg~~~~~~~~~~~~a---~~~~~~w~~~~~G~~~~~~~~~~~~---~~l~~~~~~~~~~~g~~------ 532 (660)
T COG1269 465 IGVLHLSLGLLLGFINRVRSGDIKGA---ILPQLLWLLIILGLLLLILGYKWSV---PELLGMVGAMFGAFGIL------ 532 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHH---hhhhHHHHHHHHHHHHHHHHhhhcc---cchhhHHHHHhhhccHH------
Confidence 99999999999999999996666555 6788888889999999999999986 79999998888766520
Q ss_pred ccCchHHHHHHHHHHHHhhhhhccchhHHHhhhhhccccCccccccCCCccccCCCCCccccCCCCCchhHHHHHHHHHH
Q 005673 497 FWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHS 576 (684)
Q Consensus 497 ~~gq~~vq~~ll~ia~~~vp~ml~~kp~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ge~~i~q~i~t 576 (684)
-+++++++|++ +.+.++|.+++
T Consensus 533 ---------~llvv~~i~~~-------------------------------------------------~~~~~~~~i~~ 554 (660)
T COG1269 533 ---------GLLVVGLILVP-------------------------------------------------GLVAIGQGILG 554 (660)
T ss_pred ---------HHHHHHHHHcc-------------------------------------------------hHHHHHhhHHH
Confidence 13334444432 23567889999
Q ss_pred HHHhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhh
Q 005673 577 IEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHW 656 (684)
Q Consensus 577 iE~vlg~isnt~SYlRL~ALsLAha~La~v~~~m~~~~~~~~~~~~~~~~g~~i~~~~~~~ill~me~LsaflHaLRLh~ 656 (684)
+++|++|+||++||+||||+||||++||.++|.|+.....+... +.++|+++++++|++ |++|++|+++||+|||||
T Consensus 555 ~~~~~~~~s~i~SY~RL~Al~La~~~ia~~~n~m~~~~~~~~~~--~~i~giii~i~Gh~~-n~~l~il~~~vH~lRLh~ 631 (660)
T COG1269 555 FEGVLSLLSDVLSYLRLLALGLAGASIASVVNLMTGLLIGSVPF--GIILGIIILIFGHLL-NIALSILGAGVHGLRLHY 631 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876543322 267788888888885 899999999999999999
Q ss_pred eecccCccccCCccccccccccccccC
Q 005673 657 VEFQNKFYHGDGYKFRPFSFALINDEE 683 (684)
Q Consensus 657 VEFfsKFY~G~G~~F~Pf~~~~~~~~~ 683 (684)
||||||||+|+|++|+||++++.++++
T Consensus 632 VEffskFyeG~G~~f~Pf~~~~~~~~~ 658 (660)
T COG1269 632 VEFFSKFYEGGGRKFEPFRAERNYTEI 658 (660)
T ss_pred HHHhcccccCCCcCCCccccccccccc
Confidence 999999999999999999999988765
No 5
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=68.61 E-value=25 Score=30.96 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005673 413 MSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKW 468 (684)
Q Consensus 413 lSiilGv~hm~~G~~l~~~n~~~~~~~~~~~~~~ip~~lfl~~~fgyl~~lii~kw 468 (684)
-.++.|++.+.++.++.+++.-+.++..+-....+.-+.|..|+.--+..+|.-.|
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSii~FI~giil~lG~~i~s~y 68 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSIICFILGIILTLGIVIFSMY 68 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999888877555666767777666444444444333
No 6
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=58.75 E-value=7.5 Score=47.18 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=32.4
Q ss_pred EEEeeecccHHHHHHHHHhhhccCC----CceeeEEeecC---CCCCCCcccccccchhHHHHHHHhhcCCCCC
Q 005673 208 GEGWCPIFAKAQIQEVLQRATFDSN----SQVGTIFHVMD---SMESPPTYFRTNRFTNAFQEIVDAYGVARYQ 274 (684)
Q Consensus 208 ~eGWvP~~~~~~i~~~L~~~~~~~~----~~v~~~~~~~~---~~~~pPT~~~nnkf~~~Fq~iv~~Yg~P~Y~ 274 (684)
.-|.+|.++.+++++.+.+.+...- ..+.....+.. .+..-=+++...+.-+-.+.+++.||.-.|.
T Consensus 146 ~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~ 219 (759)
T PF01496_consen 146 IAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFERYD 219 (759)
T ss_dssp ------HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B--
T ss_pred EEEEEehhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCceecC
Confidence 5899999999999999998775410 01111111111 1112223445566677888999999976664
No 7
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=48.85 E-value=2.4e+02 Score=34.26 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hc------ccc----ccc
Q 005673 142 RQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDT----------LN------MLN----FDV 201 (684)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~----------Ln------~~~----~~~ 201 (684)
...+.+++++++++++++.+..+..+++.++..+ +.+++..++|-..-... .+ ... -..
T Consensus 91 ~~~i~dle~~l~klE~el~eln~n~~~L~~n~~e-L~E~~~vl~~t~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (829)
T KOG2189|consen 91 PREIIDLEEQLEKLESELRELNANKEALKANYNE-LLELKYVLEKTDEFFSTSVQESFEDDETADLGEGPLESAEKGPFD 169 (829)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhhhhhcccchhhhhcchhhhhhcccccchhccCCCC
Confidence 3445677888888888887766555554444332 23333333322211111 00 000 011
Q ss_pred CCceEEEEEeeecccHHHHHHHHHhhhccCCCceeeEEeecCCC-CCCCc-----------ccccccchhHHHHHHHhhc
Q 005673 202 TKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSM-ESPPT-----------YFRTNRFTNAFQEIVDAYG 269 (684)
Q Consensus 202 t~~~~i~eGWvP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~-~~pPT-----------~~~nnkf~~~Fq~iv~~Yg 269 (684)
+.+.-.+.|=||.+++..+++.|-|++.+. +..-..++++. ++|-| ++.-...-+--..|+|.|+
T Consensus 170 ~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn---~f~r~~~ie~~l~dp~Tge~~~K~vFivF~~Geql~~kIkKIcd~f~ 246 (829)
T KOG2189|consen 170 GLKLGFVAGVINREKVFAFERMLWRACRGN---LFIRQSDIEEPLEDPKTGEPVEKNVFIVFFQGEQLKQKIKKICDGFG 246 (829)
T ss_pred cccceeEEeeechhHHHHHHHHHHHHhccc---eEEEeecccccccCCccCCcceeEEEEEEeecHHHHHHHHHHHhccC
Confidence 223445689999999999999999987653 22222223221 23333 2333334445567888877
Q ss_pred CCCCC
Q 005673 270 VARYQ 274 (684)
Q Consensus 270 ~P~Y~ 274 (684)
---|-
T Consensus 247 a~~yp 251 (829)
T KOG2189|consen 247 ATLYP 251 (829)
T ss_pred cEeec
Confidence 55554
No 8
>PRK10692 hypothetical protein; Provisional
Probab=41.63 E-value=96 Score=27.28 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 005673 414 SILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTG 471 (684)
Q Consensus 414 SiilGv~hm~~G~~l~~~n~~~~~~~~~~~~~~ip~~lfl~~~fgyl~~lii~kw~~~ 471 (684)
-..+|.+-|..|+..++.|++..=+ +||++.-.++|+-.+-. .-|++|
T Consensus 13 lMglGmv~Mv~gigysi~~~i~~L~--------Lp~~~~~gal~~IFiGA--llWL~G 60 (92)
T PRK10692 13 LMGLGLVVMVVGVGYSILNQLPQLN--------LPQFFAHGALLSIFVGA--LLWLAG 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC--------chHHHHhhHHHHHHHHH--HHHHhc
Confidence 3567899999999999999976433 47766555555533222 246654
No 9
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=35.84 E-value=1.2e+02 Score=26.62 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 005673 414 SILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTG 471 (684)
Q Consensus 414 SiilGv~hm~~G~~l~~~n~~~~~~~~~~~~~~ip~~lfl~~~fgyl~~lii~kw~~~ 471 (684)
-..+|.+-|..|+..++.|++..=+ +||++--.++++-.+-. .-|++|
T Consensus 13 lMglGmv~Mv~gigysi~~~~~~L~--------Lp~~~~~gal~~IFiGA--llWL~G 60 (89)
T PF10762_consen 13 LMGLGMVVMVGGIGYSILSQIPQLG--------LPQFLAHGALFSIFIGA--LLWLVG 60 (89)
T ss_pred HHHHhHHHHHHhHHHHHHHhcccCC--------CcHHHHhhHHHHHHHHH--HHHHhc
Confidence 3467899999999999999976443 47766545554432222 246654
No 10
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.24 E-value=97 Score=29.33 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcccccccCCceEEE-EEeeecccHHHHHHHHHh
Q 005673 185 RREKAVYDTLNMLNFDVTKKCLVG-EGWCPIFAKAQIQEVLQR 226 (684)
Q Consensus 185 ~kekaiy~~Ln~~~~~~t~~~~i~-eGWvP~~~~~~i~~~L~~ 226 (684)
+.-+.+.++|+ ..|.+++||.. -|=.-++.+..+--.|++
T Consensus 46 ~EH~lVi~tlk--~~dp~RKCfRmIgGvLVErTVkeVlP~L~~ 86 (140)
T KOG4098|consen 46 REHKLVIETLK--DLDPTRKCFRMIGGVLVERTVKEVLPILQT 86 (140)
T ss_pred HHHHHHHHHHH--hcChhhHHHHHhccchhhhhHHHHhHHHHh
Confidence 33345666776 45789999954 666666666666655553
No 11
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.90 E-value=5e+02 Score=26.10 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=13.2
Q ss_pred cCCchhHHHHHHHHHHHHh
Q 005673 276 ANPAVYAVITFPFLFAVMF 294 (684)
Q Consensus 276 idPt~~~~itFpf~FG~Mf 294 (684)
+|=+++..-.|.+++|+|.
T Consensus 83 ld~~L~~~~if~~~~gi~~ 101 (206)
T PF06570_consen 83 LDNSLLFFGIFSLLFGIMG 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666667888888876
No 12
>PHA02898 virion envelope protein; Provisional
Probab=32.73 E-value=1.9e+02 Score=25.59 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHH
Q 005673 413 MSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFG 458 (684)
Q Consensus 413 lSiilGv~hm~~G~~l~~~n~~~~~~~~~~~~~~ip~~lfl~~~fg 458 (684)
-.++.|++.+..+.++.++..-+.++..|-.+..+.-+.|..|+..
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgivl 58 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAIIL 58 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 4688999999999999999988888764544444555556555433
No 13
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=32.38 E-value=95 Score=34.60 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------ccCCceEEEEE----eeecccHHHHHHHHH
Q 005673 161 AGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNF------DVTKKCLVGEG----WCPIFAKAQIQEVLQ 225 (684)
Q Consensus 161 ~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~Ln~~~~------~~t~~~~i~eG----WvP~~~~~~i~~~L~ 225 (684)
-+.+++++++..+..........+.-...++..|+.+++ +..+..|-+.| |+|. +..++..+-
T Consensus 239 lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L~~L~~~~~~~~~~~~~~F~i~g~~~~Wi~~--L~~lE~~vv 311 (379)
T PF04518_consen 239 LTSEQKSELLDSLNNYKDNLNAISNQLSLLQSLLAPLSIQGVSDPDEVDGAFKITGGSDDWIPT--LQILESFVV 311 (379)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceeecCCCCCCcCCceEEEecchhHHHH--HHHHHHHHH
Confidence 344455555555554444444555555667777777766 22345777777 7665 444555443
No 14
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=31.96 E-value=1.7e+02 Score=30.96 Aligned_cols=64 Identities=9% Similarity=0.321 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHhhcCCeEeeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 114 EQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNM 183 (684)
Q Consensus 114 ~~~~~kv~kI~~s~~~~~~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~ 183 (684)
..++.+.++.|.+.|..- -.-..-|.+.+.++.+++++++.+-++. .++.+....+.++.|...
T Consensus 55 ~~lk~~A~r~~~~~G~rF---lgG~aVP~~~~~~l~~~L~~i~~eF~~~---k~~Fl~~Yd~~i~~w~~~ 118 (257)
T PF11348_consen 55 SKLKKRAERLCLKVGVRF---LGGYAVPEDKAEELAEELEDIKTEFEQE---KQDFLANYDQAIEEWIDR 118 (257)
T ss_pred HHHHHHHHHHHHHcCCcc---cceeEcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 567889999999988654 2233344566778888888887765543 444566666666666543
No 15
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=31.03 E-value=3.5e+02 Score=23.33 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 145 IREVLSRLSELEATLDAGIRHRNKALTSIG 174 (684)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~ 174 (684)
++.++++++++.++..++-++.+++++++.
T Consensus 35 i~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 35 IDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 16
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=30.56 E-value=3.5e+02 Score=25.67 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 005673 140 KQRQIIREVLSRLSELEATLDAGIRHRNKALTSIG----FHLTKWMNMVRREKA 189 (684)
Q Consensus 140 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~----~~l~~~~~~v~keka 189 (684)
...+..+++++++..++.++++.+-+.++.+...+ ..+.....++.+|++
T Consensus 17 ~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~ 70 (131)
T PF11068_consen 17 WKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQ 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 33456677777777777777777766666666654 344444444444443
No 17
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=29.15 E-value=1.1e+02 Score=33.43 Aligned_cols=58 Identities=26% Similarity=0.293 Sum_probs=35.5
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHhhccccchhh-HHHhhhhHHHHHHHHhHHHHHHHHHhcc
Q 005673 292 VMFGDWGHGICLLLGALVLIARERKLGNQKLGS-FMEMLFGGRYVLLLMSLFSIYCGLIYNE 352 (684)
Q Consensus 292 ~MfGD~GhGlll~l~~l~l~~~~~~l~~~~~~~-~~~~~~~gryilllmGi~si~~G~lyg~ 352 (684)
+-+||+-+-++.+.+..++++..+++.+++... +.+.+ -++..+.-+|.+.||+-|..
T Consensus 23 FSvgdi~~~~~il~ll~~~~~~~~~~~k~~~~~~l~~~~---~~~~~~y~~F~~~WGlNY~R 81 (318)
T PF12725_consen 23 FSVGDILYYLLILFLLYYLIRLIRKIFKKKKRFKLLNIL---FFLSVLYFLFYLLWGLNYYR 81 (318)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHhhhhcCC
Confidence 347999998877766666665544332222111 22222 23556778889999999875
No 18
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=26.39 E-value=1.3e+02 Score=23.18 Aligned_cols=29 Identities=3% Similarity=0.190 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 144 IIREVLSRLSELEATLDAGIRHRNKALTS 172 (684)
Q Consensus 144 ~~~~~~~~i~~l~~~l~~~~~~~~~~l~~ 172 (684)
....++++++++..++.+.++.|+.+..+
T Consensus 13 ~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 13 HYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666666655443
No 19
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.91 E-value=1.3e+02 Score=35.04 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCeEeeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 118 TKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTS 172 (684)
Q Consensus 118 ~kv~kI~~s~~~~~~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~ 172 (684)
.+..+|.++...+.-++...-++.+..+++++++|+++++.+.+.+.++.++...
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ 136 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGE 136 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 4555666665543332211112222235566666666666665555444444333
No 20
>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]
Probab=25.46 E-value=2.7e+02 Score=26.30 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCc-----eeeeecCCCcccccccccceeeeEEEEEEEeChhhH------HHHHHHHhhcCCeEeeCC
Q 005673 67 VLRFERMLFRATRGN-----MLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQAR------TKILKICEAFGANCYPVS 135 (684)
Q Consensus 67 ~~~fer~L~R~~rgn-----~~~~~~~i~~~~~d~~~~~~~~k~vfiv~~~g~~~~------~kv~kI~~s~~~~~~~~p 135 (684)
...+|+.||+.+|.+ -|-++..|...++|-.--+ .| .||=.-|.+-. ++=.+.+++.|++...++
T Consensus 26 ~t~aE~~LW~~lr~~rL~g~KFrRQ~~ig~yivDF~c~~--~k--lIvElDG~qH~~~~~~Da~Rd~~L~~~G~~VLRf~ 101 (129)
T COG2852 26 QTDAEKALWQHLRNRRLNGFKFRRQQPIGRYIVDFACRD--AK--LIVELDGGQHEEREEYDAERDAFLESQGFTVLRFW 101 (129)
T ss_pred CCHHHHHHHHHHHHhhhcCeeEEEeeeccCEEEEEEcCC--cc--EEEEecCccchhhhhhhHHHHHHHHhCCceEEEec
Confidence 456789999888764 3467777877777754322 12 23333332221 122368889999999998
Q ss_pred C
Q 005673 136 E 136 (684)
Q Consensus 136 ~ 136 (684)
.
T Consensus 102 N 102 (129)
T COG2852 102 N 102 (129)
T ss_pred c
Confidence 6
No 21
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.03 E-value=1.9e+02 Score=31.73 Aligned_cols=19 Identities=16% Similarity=-0.029 Sum_probs=9.6
Q ss_pred EEEeeecccHHHHHHHHHh
Q 005673 208 GEGWCPIFAKAQIQEVLQR 226 (684)
Q Consensus 208 ~eGWvP~~~~~~i~~~L~~ 226 (684)
++|+.-...++..-..|++
T Consensus 306 l~~~A~d~aieD~i~~L~~ 324 (365)
T KOG2391|consen 306 LECYALDLAIEDAIYSLGK 324 (365)
T ss_pred HHhhhhhhHHHHHHHHHHH
Confidence 4566555555544444444
No 22
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.98 E-value=2.7e+02 Score=26.53 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 138 LTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIG 174 (684)
Q Consensus 138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~ 174 (684)
.....+.+++++++.++.++++++..++.+.++..+.
T Consensus 99 ee~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 135 (144)
T PF11221_consen 99 EEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQ 135 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666555555555555555544443
No 23
>PHA02148 hypothetical protein
Probab=24.32 E-value=3.1e+02 Score=24.37 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 140 KQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGF 175 (684)
Q Consensus 140 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~ 175 (684)
..-|..+++++||..-++.|++....|+..|+....
T Consensus 34 ~A~E~FK~iE~RIA~D~~~L~~~A~~R~NEL~~HE~ 69 (110)
T PHA02148 34 EAFELFKKIEERIAHDQTRLEELAKSRENELRRHEA 69 (110)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 334567888889888888999888888887776543
No 24
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.87 E-value=66 Score=30.13 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.1
Q ss_pred HHHHHHHHhcchh
Q 005673 286 FPFLFAVMFGDWG 298 (684)
Q Consensus 286 Fpf~FG~MfGD~G 298 (684)
.-+.||+|.|=+|
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 5677888888776
No 25
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.51 E-value=2.8e+02 Score=24.32 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=33.2
Q ss_pred HHHHHHHhh-cCCeEeeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 118 TKILKICEA-FGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTS 172 (684)
Q Consensus 118 ~kv~kI~~s-~~~~~~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~ 172 (684)
.+++.++++ ++....+.|..+.......+++-.+|.-++.++...+++...+..+
T Consensus 28 ~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 28 QDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 5555555555544444556777777777777777766666555443
No 26
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.44 E-value=1.4e+02 Score=36.50 Aligned_cols=10 Identities=0% Similarity=0.145 Sum_probs=4.2
Q ss_pred EeCCcHHHHH
Q 005673 62 ICKSKVLRFE 71 (684)
Q Consensus 62 I~~e~~~~fe 71 (684)
|-......++
T Consensus 439 iitTH~~eL~ 448 (771)
T TIGR01069 439 LITTHYKELK 448 (771)
T ss_pred EEECChHHHH
Confidence 3344444443
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.12 E-value=4.2e+02 Score=27.02 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 143 QIIREVLSRLSELEATLDAGIRHRNKALTSIGFHL 177 (684)
Q Consensus 143 ~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l 177 (684)
+.+.++++++++++.++.+..+..++....+.+.+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~ 127 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKV 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44556666666666666666555555544444433
No 28
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=23.10 E-value=1.2e+02 Score=36.07 Aligned_cols=11 Identities=55% Similarity=0.661 Sum_probs=7.6
Q ss_pred HHHHHhcCcee
Q 005673 73 MLFRATRGNML 83 (684)
Q Consensus 73 ~L~R~~rgn~~ 83 (684)
.|.|.|+||.-
T Consensus 26 ~lrrlC~G~~~ 36 (632)
T PF14817_consen 26 YLRRLCRGNMA 36 (632)
T ss_pred HHHHHhccCCh
Confidence 45578899853
No 29
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=22.74 E-value=3.4e+02 Score=25.67 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHhhcCCeEe-eCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 114 EQARTKILKICEAFGANCY-PVSEDLTKQRQIIREVLSRLSELEATLDA 161 (684)
Q Consensus 114 ~~~~~kv~kI~~s~~~~~~-~~p~~~~~~~~~~~~~~~~i~~l~~~l~~ 161 (684)
..+++++++-|.+.|.-.. +-|+.. ....-.++.++|..++++|..
T Consensus 5 ~~lEeRlk~EL~~~Gll~~~d~~d~~--~~~eDDEI~aeLR~lQ~eLr~ 51 (131)
T PF10198_consen 5 LSLEERLKRELRYIGLLSEDDDPDWQ--DNREDDEISAELRRLQAELRE 51 (131)
T ss_pred hhHHHHHHHHHHHcCCcCCCCccccc--cCccchHHHHHHHHHHHHHHH
Confidence 4678899999999994311 222221 112234555556666655543
No 30
>MTH00173 ATP6 ATP synthase F0 subunit 6; Provisional
Probab=22.65 E-value=5.2e+02 Score=26.74 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 005673 570 VHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFL 649 (684)
Q Consensus 570 i~q~i~tiE~vlg~isnt~SYlRL~ALsLAha~La~v~~~m~~~~~~~~~~~~~~~~g~~i~~~~~~~ill~me~Lsafl 649 (684)
+.-.||+++.+..-+|-+ +||+|=-.|+-.+..++..+......+. +.. .+.+.+++. . ....+|.+.+++
T Consensus 143 ~l~~iE~is~~~RplsL~---lRLf~Nm~aGhill~l~~~~~~~~~~~~-~~~---~~~~~~~~~-~-~~~~lE~~V~~i 213 (231)
T MTH00173 143 FLVLIETVSILIRPLTLT---VRLLANISAGHIVLTLIGNYLSSSLFSS-SVV---SLLLVLLIQ-V-GYFIFEVAVMLI 213 (231)
T ss_pred HHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHH---HHHHHHHHH-H-HHHHHHHHHHHH
Confidence 344566666665555544 5999988888877766554322111110 111 011111111 1 235689999999
Q ss_pred hhh
Q 005673 650 HAL 652 (684)
Q Consensus 650 HaL 652 (684)
||-
T Consensus 214 QAy 216 (231)
T MTH00173 214 QAY 216 (231)
T ss_pred HHH
Confidence 884
No 31
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=21.93 E-value=8.9e+02 Score=24.99 Aligned_cols=23 Identities=9% Similarity=-0.140 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcchhHHHHHHHHH
Q 005673 285 TFPFLFAVMFGDWGHGICLLLGA 307 (684)
Q Consensus 285 tFpf~FG~MfGD~GhGlll~l~~ 307 (684)
...+..=+.+.-+|||++.+.+.
T Consensus 90 s~wl~iHv~~a~l~ya~~~la~~ 112 (243)
T TIGR03144 90 SNWLMMHVSVMILSYAALLVGSL 112 (243)
T ss_pred CChHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566778887665544
No 32
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.84 E-value=5.3e+02 Score=22.60 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 142 RQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWM 181 (684)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~ 181 (684)
.+.+..++..|..|...|...+++...+..++.+.++.-+
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3457888899999999888888888888777777666443
No 33
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=21.36 E-value=2.7e+02 Score=24.37 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhHhHHhh
Q 005673 631 FAFATAFILLMMETLSAFLHA 651 (684)
Q Consensus 631 ~~~~~~~ill~me~LsaflHa 651 (684)
|+++.+- ..+|.++|+++-.
T Consensus 22 flfL~iL-i~~~~~m~~~v~r 41 (84)
T COG3630 22 FLFLSIL-IYAMRGMGAVVRR 41 (84)
T ss_pred HHHHHHH-HHHHHHHHHHHHh
Confidence 3344442 3578999988753
No 34
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.31 E-value=4.5e+02 Score=21.28 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005673 146 REVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTL 194 (684)
Q Consensus 146 ~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~L 194 (684)
.+++.++.+++..+...+++.+ ++++.++.....+++--++|+..
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~----~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENE----EISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544443333 33344444455566666677654
No 35
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=21.22 E-value=7.1e+02 Score=27.87 Aligned_cols=67 Identities=10% Similarity=0.299 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHH--Hhh--ccccchhhHHHhhhhHHHHHHHHhHHHHHHHHHhcccc
Q 005673 283 VITFPFLFAVMFGDWGHGICLLLGALVLIAR--ERK--LGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFF 354 (684)
Q Consensus 283 ~itFpf~FG~MfGD~GhGlll~l~~l~l~~~--~~~--l~~~~~~~~~~~~~~gryilllmGi~si~~G~lyg~~F 354 (684)
.--||..||.+|...==-+++.++|+.++-- |-+ ......++.++..| ..-.-+.+..+|.+.|.+.
T Consensus 72 FAAFP~~Ya~lfS~lYlpl~l~L~~LIlRgvafEfR~k~~~~~wr~~Wd~~f-----~vgS~l~~f~~Gv~~g~~v 142 (378)
T PRK15028 72 FAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL-----VIGSLVPPVVFGIAFGNLL 142 (378)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccCCChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3469999999999887778888888776531 111 11112345555332 2223355666677777654
No 36
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=20.69 E-value=5.2e+02 Score=22.84 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC-CccchhhhhhhHHHHHHHH
Q 005673 413 MSILLGVTQMNLGIILSYFDARFFG-SSLDIRYQFVPQLIFLNSL 456 (684)
Q Consensus 413 lSiilGv~hm~~G~~l~~~n~~~~~-~~~~~~~~~ip~~lfl~~~ 456 (684)
-.++.|++.+..+.++.++..-+.+ +..+-....+.-+.|..|+
T Consensus 13 ~vli~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~ 57 (91)
T PHA02680 13 GVLICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGA 57 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHHHHH
Confidence 4678999999999999999987766 3333333334444555554
No 37
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=20.39 E-value=3.5e+02 Score=29.88 Aligned_cols=85 Identities=25% Similarity=0.453 Sum_probs=52.4
Q ss_pred HHhhcCCCCCcc---CCchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhccccchhhHHHhh----hhHHH--H
Q 005673 265 VDAYGVARYQEA---NPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEML----FGGRY--V 335 (684)
Q Consensus 265 v~~Yg~P~Y~Ei---dPt~~~~itFpf~FG~MfGD~GhGlll~l~~l~l~~~~~~l~~~~~~~~~~~~----~~gry--i 335 (684)
-++..=|+|+-. =| -+..+.||++--+-..-..-+.+++++|++++.|.-.+.. ...+.++.. +.||. +
T Consensus 150 Kk~l~Dp~~~~~~lGvP-G~~lLiy~i~~l~~~~~~a~~~i~~~iG~yll~kGfgld~-~~~~~~~~~~~~l~~g~it~i 227 (344)
T PF04123_consen 150 KKALSDPEYRRTFLGVP-GLILLIYAILALLGYPAYALGIILLLIGLYLLYKGFGLDD-YLREWLERFRESLYEGRITFI 227 (344)
T ss_pred HHhhcChhhhceeecch-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHhccccccceeehH
Confidence 345556777664 46 5666777877666666667799999999999976332211 112222222 22332 4
Q ss_pred HHHHhHHHHHHHHHhc
Q 005673 336 LLLMSLFSIYCGLIYN 351 (684)
Q Consensus 336 lllmGi~si~~G~lyg 351 (684)
..+.++..++.|.++|
T Consensus 228 tyvva~~l~iig~i~g 243 (344)
T PF04123_consen 228 TYVVALLLIIIGIIYG 243 (344)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777788888876
No 38
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.32 E-value=5.3e+02 Score=24.32 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 146 REVLSRLSELEATLDAGIRHRNKALTSI 173 (684)
Q Consensus 146 ~~~~~~i~~l~~~l~~~~~~~~~~l~~i 173 (684)
+.+.++++++.+.|..+++|+.+.++.+
T Consensus 46 ~~v~kql~~vs~~l~~tKkhLsqRId~v 73 (126)
T PF07889_consen 46 ASVSKQLEQVSESLSSTKKHLSQRIDRV 73 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333333
No 39
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.19 E-value=3.8e+02 Score=29.10 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 145 IREVLSRLSELEATLDAGIRHRNKALT 171 (684)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~l~ 171 (684)
+++++.+.+++.+++++.+++..++.+
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~ 78 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQ 78 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
Done!