Query 005673
Match_columns 684
No_of_seqs 265 out of 950
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 100.0 9.1E-33 3.1E-37 298.6 16.5 208 51-277 144-357 (357)
2 2nvj_A 25MER peptide from vacu 99.2 1.7E-13 5.8E-18 88.4 -3.0 26 578-603 1-26 (26)
3 2jtw_A Transmembrane helix 7 o 98.9 4.4E-10 1.5E-14 72.1 2.6 21 584-604 2-22 (26)
4 3rrk_A V-type ATPase 116 kDa s 53.4 2.1E+02 0.0071 29.6 15.3 193 51-274 10-214 (357)
5 3ghg_A Fibrinogen alpha chain; 43.2 53 0.0018 36.4 7.9 83 140-229 107-190 (562)
6 1deq_A Fibrinogen (alpha chain 33.0 2.6E+02 0.0091 29.6 11.0 86 136-229 106-193 (390)
7 3a7p_A Autophagy protein 16; c 31.7 78 0.0027 29.4 6.0 45 145-189 98-142 (152)
8 2pnv_A Small conductance calci 28.8 1.3E+02 0.0044 22.0 5.5 32 141-172 7-38 (43)
9 2xv5_A Lamin-A/C; structural p 26.8 2.5E+02 0.0087 22.7 8.6 49 145-194 7-55 (74)
10 1ykh_B RNA polymerase II holoe 26.7 3E+02 0.01 24.7 9.0 37 138-174 87-123 (132)
11 1yke_B RNA polymerase II holoe 26.7 2.8E+02 0.0096 25.6 9.0 36 138-173 87-122 (151)
12 1gk6_A Vimentin; intermediate 24.3 2.3E+02 0.008 21.7 6.8 47 147-194 4-50 (59)
13 3lay_A Zinc resistance-associa 23.9 2.4E+02 0.0081 26.7 8.1 14 115-128 71-84 (175)
14 1m1j_A Fibrinogen alpha subuni 23.6 4E+02 0.014 29.0 10.5 85 138-229 106-191 (491)
15 2qyw_A Vesicle transport throu 23.3 2.1E+02 0.0073 24.4 7.1 49 138-186 44-96 (102)
16 3zym_A Phosphatidylinositol-bi 22.8 51 0.0017 34.2 3.5 41 122-162 259-299 (310)
17 3onj_A T-snare VTI1; helix, HA 22.8 3.4E+02 0.012 22.8 10.7 49 138-186 29-83 (97)
18 2bez_C E2 glycoprotein; coiled 22.6 3.2E+02 0.011 22.4 7.6 51 142-195 22-72 (77)
19 3twe_A Alpha4H; unknown functi 21.9 1.4E+02 0.0049 18.9 4.0 15 147-161 5-19 (27)
20 3oja_B Anopheles plasmodium-re 21.0 4.5E+02 0.016 28.8 11.2 49 142-190 508-559 (597)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=100.00 E-value=9.1e-33 Score=298.58 Aligned_cols=208 Identities=13% Similarity=0.135 Sum_probs=145.2
Q ss_pred CCcceeEEEEEE-eCCcHHHHHHHHHHHhcCceeeeecCCCcccccccccceeeeEEEEEEEeChhhHHHHHHHHhhcCC
Q 005673 51 NQSGLRFISGII-CKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGA 129 (684)
Q Consensus 51 ~~~~l~~v~G~I-~~e~~~~fer~L~R~~rgn~~~~~~~i~~~~~d~~~~~~~~k~vfiv~~~g~~~~~kv~kI~~s~~~ 129 (684)
...++++++|+| ++++.++|++.|||+++|..+.. . ++...+++++|++ +++..+++++||+++||
T Consensus 144 ~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~-----------~-~~~~~~~~~vv~~-~~~~~~~v~~il~s~~f 210 (357)
T 3rrk_A 144 ESPRLGVIPFLVAKPEELEAVRKALQEALADRFVLE-----------A-EPLENQLAALVVV-KRSELEAARSSLSRLGL 210 (357)
T ss_dssp TCTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEE-----------E-EECSSSEEEEEEE-EGGGHHHHHHHHHTTTC
T ss_pred ccceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEE-----------e-ecCCCcEEEEEEE-EHHHHHHHHHHHHHCCC
Confidence 456899999999 79999999999999999943221 1 2233456677776 46678899999999999
Q ss_pred eEeeCCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCceEE
Q 005673 130 NCYPVSEDLT--KQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLV 207 (684)
Q Consensus 130 ~~~~~p~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~Ln~~~~~~t~~~~i 207 (684)
++|++|+..+ .+.+.++++++++++++++++++++++.++.......+..|...+++++++|+++|++ +.|++|++
T Consensus 211 ~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~ 288 (357)
T 3rrk_A 211 AELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADM--AAGKYGAA 288 (357)
T ss_dssp CBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCSEE
T ss_pred eeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCcEEE
Confidence 9999998877 9999999999999999999999999999999998899999999999999999999965 68999999
Q ss_pred EEEeeecccHHHHHHHHHhhhccCCCceeeEEeecCCC---CCCCcccccccchhHHHHHHHhhcCCCCCccC
Q 005673 208 GEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSM---ESPPTYFRTNRFTNAFQEIVDAYGVARYQEAN 277 (684)
Q Consensus 208 ~eGWvP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~---~~pPT~~~nnkf~~~Fq~iv~~Yg~P~Y~Eid 277 (684)
++||||++++++++++|++ ++ ..+.+.+++++++ ++|||+++||||++|||.||+|||+|+|+|+|
T Consensus 289 ~~gWvp~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~~Yg~p~Y~EiD 357 (357)
T 3rrk_A 289 LMGWVPQKAKGKVEEALGR-LR---DQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGSHD 357 (357)
T ss_dssp EEEEECTTTHHHHHHTCCS-SC---EEEEC-------------------------------------------
T ss_pred EEEEeeHHHHHHHHHHHHh-cC---CceEEEEecCCccccCCCcCEeccCCchhhHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999986 32 3566777777766 58999999999999999999999999999998
No 2
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic}
Probab=99.24 E-value=1.7e-13 Score=88.44 Aligned_cols=26 Identities=73% Similarity=1.120 Sum_probs=23.8
Q ss_pred HHhhhhhhhhHHHHHHHHHhhhhHHH
Q 005673 578 EFVLGAVSNTASYLRLWALSLAHSEL 603 (684)
Q Consensus 578 E~vlg~isnt~SYlRL~ALsLAha~L 603 (684)
|||+|++|||+||+|||||||||+||
T Consensus 1 e~~l~~is~tasylRlwaLsLah~~l 26 (26)
T 2nvj_A 1 EFCLNCVSHTASYLRLWALSLAHAQX 26 (26)
T ss_dssp CCSSSTTTTTCHHHHGGGSCSSCCC-
T ss_pred CeEEEEeCCchHHHHHHhhhcccccC
Confidence 57999999999999999999999985
No 3
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=98.92 E-value=4.4e-10 Score=72.08 Aligned_cols=21 Identities=81% Similarity=1.165 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHhhhhHHHH
Q 005673 584 VSNTASYLRLWALSLAHSELS 604 (684)
Q Consensus 584 isnt~SYlRL~ALsLAha~La 604 (684)
+|||+||+|||||||||++++
T Consensus 2 ~s~tasylRlwaLsLaH~~ls 22 (26)
T 2jtw_A 2 KSHTASYLRLWALSLAHAQLS 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHhhhhHHHHh
Confidence 799999999999999999987
No 4
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=53.42 E-value=2.1e+02 Score=29.58 Aligned_cols=193 Identities=13% Similarity=0.016 Sum_probs=92.8
Q ss_pred CCcceeEEEEEEeCCcHHHHHHHHHHHhcCceeeeecCCCccccccccc-----ceeeeEEEEEEEeChhhHHHHHHHHh
Q 005673 51 NQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTA-----EMVEKTIFVVFFSGEQARTKILKICE 125 (684)
Q Consensus 51 ~~~~l~~v~G~I~~e~~~~fer~L~R~~rgn~~~~~~~i~~~~~d~~~~-----~~~~k~vfiv~~~g~~~~~kv~kI~~ 125 (684)
++.+...+.=++++++....-+.|-+ .|.+-+....-+ ..+.... +... .-++...+++.+.+
T Consensus 10 ~pekM~kv~l~~~~~~~~~vl~~L~~--lg~vhi~d~~~~--~~~~~~l~~~~~~~~~--------~~~~~~~k~~~~~~ 77 (357)
T 3rrk_A 10 DDDKMEKLIVAGPKRLARELLAELQK--AGVVHIDPLRPD--ELGEYRLSPTEEAELK--------RWEAVVSQAEQSLT 77 (357)
T ss_dssp ----CEEEEEEECGGGHHHHHHHHHH--HTCEEEEEECGG--GGGGGCCCHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred ChhheEEEEEEeEHHHHHHHHHHHHH--cCcEEEEecccc--ccccccCCccchHHHh--------HHHHHHHHHHHHHH
Confidence 34567778888999999888777754 576655432211 1110000 0001 01345667778887
Q ss_pred hcCCeEee----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccc
Q 005673 126 AFGANCYP----VSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSI--GFHLTKWMNMVRREKAVYDTLNMLNF 199 (684)
Q Consensus 126 s~~~~~~~----~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i--~~~l~~~~~~v~kekaiy~~Ln~~~~ 199 (684)
.++-..-+ .+.......+.+.++.++++++++.+++.++++.++.+.. ...+..|. .++
T Consensus 78 ~L~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~---------------~~l 142 (357)
T 3rrk_A 78 VVGLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALA---------------HGL 142 (357)
T ss_dssp HHTCCCCCCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------TTT
T ss_pred HhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh---------------ccC
Confidence 77732111 1111122223344444444444444444443333322220 01111221 012
Q ss_pred ccCCceEEEEEee-ecccHHHHHHHHHhhhccCCCceeeEEeecCCCCCCCcccccccchhHHHHHHHhhcCCCCC
Q 005673 200 DVTKKCLVGEGWC-PIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQ 274 (684)
Q Consensus 200 ~~t~~~~i~eGWv-P~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~~~pPT~~~nnkf~~~Fq~iv~~Yg~P~Y~ 274 (684)
+.+...-+.-|-| |.+..+++++.|.+.+.+. .+. .+... .....=.++-......-...+++.+|.-+|.
T Consensus 143 d~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~--~~~-~~~~~-~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~ 214 (357)
T 3rrk_A 143 DESPRLGVIPFLVAKPEELEAVRKALQEALADR--FVL-EAEPL-ENQLAALVVVKRSELEAARSSLSRLGLAELR 214 (357)
T ss_dssp TTCTTEEEEEEEESCHHHHHHHHHHHHHHHTTS--CEE-EEEEC-SSSEEEEEEEEGGGHHHHHHHHHTTTCCBCC
T ss_pred CccceeeeeeEEecChhhHHHHHHHHHHhcCCe--EEE-EeecC-CCcEEEEEEEEHHHHHHHHHHHHHCCCeecc
Confidence 2344455667899 7888999999998875541 111 11111 1111112222234555677888888866664
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.16 E-value=53 Score=36.35 Aligned_cols=83 Identities=10% Similarity=0.039 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccccCCceEEEEEeeecccHH
Q 005673 140 KQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMV-RREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKA 218 (684)
Q Consensus 140 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v-~kekaiy~~Ln~~~~~~t~~~~i~eGWvP~~~~~ 218 (684)
...|...+|+.+|+.|+.+++...+.++.+. .+|+.-+..+ +-|..|--.+..|+-.-++.. +==|..++.+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQ----snLedq~~kIQRLEvDIdiqirsCKgsCsr~~---~~~vd~~sY~ 179 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ----KNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL---AREVDLKDYE 179 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCC---CCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccccccchh---eeecchHHHH
Confidence 3344455788888888888776554443333 2333323222 335666666666643223222 1226778889
Q ss_pred HHHHHHHhhhc
Q 005673 219 QIQEVLQRATF 229 (684)
Q Consensus 219 ~i~~~L~~~~~ 229 (684)
.+|+.|+++..
T Consensus 180 ~~QKQLeQv~a 190 (562)
T 3ghg_A 180 DQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999988643
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.03 E-value=2.6e+02 Score=29.65 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccccCCceEEEEEe-ee
Q 005673 136 EDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMV-RREKAVYDTLNMLNFDVTKKCLVGEGW-CP 213 (684)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v-~kekaiy~~Ln~~~~~~t~~~~i~eGW-vP 213 (684)
+......+...+++++|+.|++.+......++.+... ++.-+..+ +-|.+|.-....| +..|-+.--+ |.
T Consensus 106 dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~----l~~q~~kiqRLE~~Id~c~~~C----~~sC~~~l~~~vD 177 (390)
T 1deq_A 106 NNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN----VRDQLVDMKRLEVDIDIKIRSC----KGSCSRALEHKVD 177 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccc----ccccchhhhhhcc
Confidence 4455666777888888888888877655544433333 33222222 3355554333333 2334433222 36
Q ss_pred cccHHHHHHHHHhhhc
Q 005673 214 IFAKAQIQEVLQRATF 229 (684)
Q Consensus 214 ~~~~~~i~~~L~~~~~ 229 (684)
.++.++.++.|..+..
T Consensus 178 ~e~ye~qqKQL~qv~a 193 (390)
T 1deq_A 178 LEDYKNQQKQLEQVIA 193 (390)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 6677777777776543
No 7
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=31.70 E-value=78 Score=29.41 Aligned_cols=45 Identities=7% Similarity=0.075 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 145 IREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKA 189 (684)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~keka 189 (684)
++.++.++..++-.+...++..+++-+.....++.|..+..+|..
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe 142 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETE 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555556678888877666553
No 8
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.78 E-value=1.3e+02 Score=21.99 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 141 QRQIIREVLSRLSELEATLDAGIRHRNKALTS 172 (684)
Q Consensus 141 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~ 172 (684)
.-+...++++|-+++++.+...+.++..+.+.
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888777776666555444
No 9
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.84 E-value=2.5e+02 Score=22.71 Aligned_cols=49 Identities=16% Similarity=0.033 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005673 145 IREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTL 194 (684)
Q Consensus 145 ~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~L 194 (684)
.++.+..|.+++.++.+.+.+....+......+ ..+..+..|-+.|..|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Ll-niKl~Le~EIatYRkL 55 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELL-DIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 455566666666666666655555554443222 2344556777888765
No 10
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.67 E-value=3e+02 Score=24.67 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 138 LTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIG 174 (684)
Q Consensus 138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~ 174 (684)
.....+.+++++++.++.++++++..++.+.+++.+.
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666555555555554443
No 11
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.66 E-value=2.8e+02 Score=25.56 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 138 LTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSI 173 (684)
Q Consensus 138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i 173 (684)
.....+.+++++++.++.++++++..++.+.+++++
T Consensus 87 eeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555655555555555555444444444443
No 12
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=24.33 E-value=2.3e+02 Score=21.73 Aligned_cols=47 Identities=17% Similarity=0.072 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005673 147 EVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTL 194 (684)
Q Consensus 147 ~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~L 194 (684)
+.+..|.+++..+.+++......+......+ ..+..+..|-+.|..|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Ll-niK~~Le~EIatYRkL 50 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLL-NVKMALDIEIATYRKL 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHH
Confidence 3444555555555555554444444432222 2234456677777655
No 13
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.87 E-value=2.4e+02 Score=26.73 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=7.7
Q ss_pred hhHHHHHHHHhhcC
Q 005673 115 QARTKILKICEAFG 128 (684)
Q Consensus 115 ~~~~kv~kI~~s~~ 128 (684)
+-++++++|.+++.
T Consensus 71 EQq~ql~~I~~e~r 84 (175)
T 3lay_A 71 EQQATAQKIYDDYY 84 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33556666665554
No 14
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.65 E-value=4e+02 Score=29.04 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccccCCceEEEEEeeeccc
Q 005673 138 LTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMV-RREKAVYDTLNMLNFDVTKKCLVGEGWCPIFA 216 (684)
Q Consensus 138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v-~kekaiy~~Ln~~~~~~t~~~~i~eGWvP~~~ 216 (684)
.....+...+++.+|..|+..+...-+.++. ++.+++..+..+ +-|.+|-..+..|.-.-++.. +==|..++
T Consensus 106 dn~~~e~S~eLe~ri~yIK~kVd~qi~~Irv----Lq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~---~y~VD~~~ 178 (491)
T 1m1j_A 106 DENYGHVSTELRRRIVTLKQRVATQVNRIKA----LQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSF---DYQVDKEG 178 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCC---CCCCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhH---HhhhcHHH
Confidence 3444566677777777777777665533333 233333333323 346777777776653333322 22377888
Q ss_pred HHHHHHHHHhhhc
Q 005673 217 KAQIQEVLQRATF 229 (684)
Q Consensus 217 ~~~i~~~L~~~~~ 229 (684)
.+.+|+.|+++..
T Consensus 179 Ye~~QKqLeQv~a 191 (491)
T 1m1j_A 179 YDNIQKHLTQASS 191 (491)
T ss_dssp THHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998743
No 15
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.33 E-value=2.1e+02 Score=24.39 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 005673 138 LTKQRQIIREVLSRLSELEATLDAGIRHRNKA----LTSIGFHLTKWMNMVRR 186 (684)
Q Consensus 138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~----l~~i~~~l~~~~~~v~k 186 (684)
.+++.+.+.+++..+++.++.|++..-+.+.+ ...+...++.|+..+.+
T Consensus 44 ~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~ 96 (102)
T 2qyw_A 44 TEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAK 96 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 36777889999999999999998876655433 22223344455544433
No 16
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=22.78 E-value=51 Score=34.17 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=18.2
Q ss_pred HHHhhcCCeEeeCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 122 KICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAG 162 (684)
Q Consensus 122 kI~~s~~~~~~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~ 162 (684)
+.|+++|....++|+.+..+.+.++++++++++.+.++.+.
T Consensus 259 ~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~n 299 (310)
T 3zym_A 259 KVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQN 299 (310)
T ss_dssp HHHHHTC------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 78999998888999888888888888888888887776443
No 17
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.76 E-value=3.4e+02 Score=22.81 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 005673 138 LTKQRQIIREVLSRLSELEATLDAGIRHRNKA------LTSIGFHLTKWMNMVRR 186 (684)
Q Consensus 138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~------l~~i~~~l~~~~~~v~k 186 (684)
.+.+.+.+.+++..+++.+..|++..-+.+.+ ...+...++.|+..+.+
T Consensus 29 ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~ 83 (97)
T 3onj_A 29 LSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQS 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34677789999999999999988877766655 22333455566555554
No 18
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=22.61 E-value=3.2e+02 Score=22.36 Aligned_cols=51 Identities=8% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005673 142 RQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLN 195 (684)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~Ln 195 (684)
.+-...+..-+.+++.++.+-...+.++..++..+......-+ +.||..|.
T Consensus 22 ~~g~~tts~AL~kiQdVVN~q~~aL~~L~~qL~~NFgAISssi---~dIy~RLd 72 (77)
T 2bez_C 22 QESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL---NDILSRLD 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHH
Confidence 4556667777777888887777777777777776655544332 44666554
No 19
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.88 E-value=1.4e+02 Score=18.88 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 005673 147 EVLSRLSELEATLDA 161 (684)
Q Consensus 147 ~~~~~i~~l~~~l~~ 161 (684)
++-.+++|+++.+..
T Consensus 5 elykeledlqerlrk 19 (27)
T 3twe_A 5 ELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555554443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.98 E-value=4.5e+02 Score=28.77 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 142 RQIIREVLSRLSELEATLDAGIRHR---NKALTSIGFHLTKWMNMVRREKAV 190 (684)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~~~~~~~---~~~l~~i~~~l~~~~~~v~kekai 190 (684)
.+..++++++.++++.++++.++.. ++.++.+.+..+.+..+++++|..
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 559 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhH
Confidence 3344444444444444444333322 223333334444555444444443
Done!