Query 005673
Match_columns 684
No_of_seqs 265 out of 950
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 04:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005673.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005673hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ydxa1 d.287.1.2 (A:1-193) Bi 28.6 55 0.004 27.7 7.1 32 142-173 150-181 (193)
2 d1ykhb1 a.252.1.1 (B:2-130) RN 25.6 88 0.0064 26.0 7.4 39 138-176 86-124 (129)
3 d1h3oa_ a.22.1.3 (A:) TAF(II)- 22.7 38 0.0028 23.8 3.5 23 111-133 3-25 (50)
4 d1yf2a2 d.287.1.2 (A:221-425) 22.6 62 0.0045 27.2 6.2 6 131-136 152-157 (205)
5 d1wu9a1 a.245.1.1 (A:191-249) 18.2 88 0.0064 22.6 4.9 30 144-173 2-31 (59)
6 d1vcsa1 a.47.2.1 (A:8-96) Vesi 15.8 94 0.0069 24.1 5.0 29 139-167 27-55 (89)
7 d1ydxa2 d.287.1.2 (A:194-374) 15.7 1.3E+02 0.0097 24.8 6.7 31 142-172 145-175 (181)
8 d2ivya1 d.58.58.1 (A:2-89) Hyp 14.5 96 0.007 24.0 4.7 22 113-134 12-33 (88)
9 d1seta1 a.2.7.1 (A:1-110) Sery 14.3 1.1E+02 0.0081 24.1 5.3 15 114-128 45-59 (110)
10 d1yf2a1 d.287.1.2 (A:1-220) Bi 14.2 1.3E+02 0.0097 25.7 6.4 6 131-136 162-167 (220)
No 1
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=28.63 E-value=55 Score=27.69 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 142 RQIIREVLSRLSELEATLDAGIRHRNKALTSI 173 (684)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i 173 (684)
.+.+..++++++.+++.++..++.++.+++++
T Consensus 150 ~~~l~~ld~~i~~~~~~i~~l~~~~~~ll~~l 181 (193)
T d1ydxa1 150 ANTLSVFDERLENLASLIEINRKLRDEYAHKL 181 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777766666666554
No 2
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.63 E-value=88 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 138 LTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFH 176 (684)
Q Consensus 138 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~ 176 (684)
+....+.+++++++.++.++++++..++.+.+++++...
T Consensus 86 ee~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~ 124 (129)
T d1ykhb1 86 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666777777666666666655555555555433
No 3
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.74 E-value=38 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=18.2
Q ss_pred EeChhhHHHHHHHHhhcCCeEee
Q 005673 111 FSGEQARTKILKICEAFGANCYP 133 (684)
Q Consensus 111 ~~g~~~~~kv~kI~~s~~~~~~~ 133 (684)
.....+..++.+|++.+|.+...
T Consensus 3 L~~~~Lq~ri~~I~~k~Gl~e~~ 25 (50)
T d1h3oa_ 3 LLQAPLQRRILEIGKKHGITELH 25 (50)
T ss_dssp SCHHHHHHHHHHHHHTTTCCEEC
T ss_pred CChHHHHHHHHHHHHHcCCCccC
Confidence 34567789999999999977653
No 4
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=22.65 E-value=62 Score=27.22 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=3.3
Q ss_pred EeeCCC
Q 005673 131 CYPVSE 136 (684)
Q Consensus 131 ~~~~p~ 136 (684)
.+++|+
T Consensus 152 ~i~lP~ 157 (205)
T d1yf2a2 152 KIPLPP 157 (205)
T ss_dssp EEEECC
T ss_pred cccCCC
Confidence 456664
No 5
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.15 E-value=88 Score=22.56 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 144 IIREVLSRLSELEATLDAGIRHRNKALTSI 173 (684)
Q Consensus 144 ~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i 173 (684)
.++++++++.+++..++..+++|+-...++
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KL 31 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKL 31 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888887777655554
No 6
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.79 E-value=94 Score=24.06 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 139 TKQRQIIREVLSRLSELEATLDAGIRHRN 167 (684)
Q Consensus 139 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 167 (684)
..+.+.+.+++..+++.+..|++..-+.+
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr 55 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVR 55 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45677899999999999999988765543
No 7
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=15.72 E-value=1.3e+02 Score=24.79 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005673 142 RQIIREVLSRLSELEATLDAGIRHRNKALTS 172 (684)
Q Consensus 142 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~ 172 (684)
.+.+..++++++.+++.++++++.++.++++
T Consensus 145 ~~~l~~~d~~i~~~~~~i~~l~~lk~~Ll~~ 175 (181)
T d1ydxa2 145 GKIVFLLDQKLDQYKKELSSLTVIRDTLLKK 175 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666655555544
No 8
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=14.52 E-value=96 Score=23.97 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=17.3
Q ss_pred ChhhHHHHHHHHhhcCCeEeeC
Q 005673 113 GEQARTKILKICEAFGANCYPV 134 (684)
Q Consensus 113 g~~~~~kv~kI~~s~~~~~~~~ 134 (684)
.+.-+.|+.|+|+++|..++..
T Consensus 12 d~krr~kv~k~l~~yGl~rvQ~ 33 (88)
T d2ivya1 12 DDNLRNRVAEFLKKKGLDRIQY 33 (88)
T ss_dssp CHHHHHHHHHHHHHTTCEEEET
T ss_pred CcHHHHHHHHHHHHhCCcceEe
Confidence 3456789999999999876543
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=14.33 E-value=1.1e+02 Score=24.13 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHhhcC
Q 005673 114 EQARTKILKICEAFG 128 (684)
Q Consensus 114 ~~~~~kv~kI~~s~~ 128 (684)
++++++-+++.++.|
T Consensus 45 e~l~~~rN~~sk~i~ 59 (110)
T d1seta1 45 QEVQTERNQVAKRVP 59 (110)
T ss_dssp HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 10
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=14.21 E-value=1.3e+02 Score=25.70 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=3.3
Q ss_pred EeeCCC
Q 005673 131 CYPVSE 136 (684)
Q Consensus 131 ~~~~p~ 136 (684)
.+++|+
T Consensus 162 ~i~iPp 167 (220)
T d1yf2a1 162 KIPLPP 167 (220)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 455664
Done!