BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005674
         (684 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From
           Colwellia Psychrerythraea 34h.
 pdb|3IC9|B Chain B, The Structure Of Dihydrolipoamide Dehydrogenase From
           Colwellia Psychrerythraea 34h.
 pdb|3IC9|C Chain C, The Structure Of Dihydrolipoamide Dehydrogenase From
           Colwellia Psychrerythraea 34h.
 pdb|3IC9|D Chain D, The Structure Of Dihydrolipoamide Dehydrogenase From
           Colwellia Psychrerythraea 34h
          Length = 492

 Score = 29.3 bits (64), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 482 ELGPSISRIGKFVENLKNLSEGSENASSGDDEHSKELNPRKNLEEEYLDYEAKIITTFSV 541
           ELG ++SR+G  V+        S + ++  DE  K    +   EE Y D +A++I+T   
Sbjct: 188 ELGQALSRLGVIVKVFGR----SGSVANLQDEEXKRYAEKTFNEEFYFDAKARVISTIEK 243

Query: 542 VDNMKEQFYAQRGANSRKDDPRVKELFD---DIEKLRLEFESIE 582
            D ++  ++ + G  + +    V        +++KL LE  SIE
Sbjct: 244 EDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIE 287


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.128    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,533,990
Number of Sequences: 62578
Number of extensions: 658858
Number of successful extensions: 1758
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1746
Number of HSP's gapped (non-prelim): 25
length of query: 684
length of database: 14,973,337
effective HSP length: 105
effective length of query: 579
effective length of database: 8,402,647
effective search space: 4865132613
effective search space used: 4865132613
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)