Query 005674
Match_columns 684
No_of_seqs 29 out of 31
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 12:01:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 96.5 1.5 3.2E-05 53.2 27.2 198 357-581 825-1029(1163)
2 PF12128 DUF3584: Protein of u 95.1 12 0.00026 45.9 29.7 39 407-445 772-810 (1201)
3 TIGR02169 SMC_prok_A chromosom 94.4 14 0.0003 43.4 30.7 6 177-182 654-659 (1164)
4 TIGR02168 SMC_prok_B chromosom 94.1 15 0.00032 42.8 29.6 33 362-394 861-893 (1179)
5 COG1196 Smc Chromosome segrega 92.9 12 0.00026 45.7 21.3 68 178-248 248-315 (1163)
6 PRK11637 AmiB activator; Provi 92.3 16 0.00035 39.6 19.4 38 359-396 81-118 (428)
7 COG3883 Uncharacterized protei 92.0 13 0.00028 39.5 17.7 189 180-401 20-217 (265)
8 KOG0161 Myosin class II heavy 91.6 52 0.0011 43.2 25.2 246 217-499 827-1090(1930)
9 PRK02224 chromosome segregatio 91.3 35 0.00075 39.9 33.7 21 156-176 141-161 (880)
10 PF05667 DUF812: Protein of un 91.2 27 0.00058 40.6 20.5 79 485-581 488-566 (594)
11 PHA02562 46 endonuclease subun 90.5 16 0.00034 40.0 17.4 71 354-428 207-277 (562)
12 TIGR03185 DNA_S_dndD DNA sulfu 89.9 42 0.00091 38.5 21.3 40 468-507 378-417 (650)
13 TIGR03185 DNA_S_dndD DNA sulfu 88.4 53 0.0012 37.7 23.4 76 349-424 205-280 (650)
14 PRK02224 chromosome segregatio 87.6 64 0.0014 37.8 28.3 48 447-495 641-688 (880)
15 KOG0996 Structural maintenance 86.7 65 0.0014 40.6 20.2 311 170-501 747-1109(1293)
16 KOG0250 DNA repair protein RAD 86.6 62 0.0013 40.3 20.0 106 358-472 370-481 (1074)
17 PRK09039 hypothetical protein; 86.3 25 0.00055 37.8 15.2 60 358-420 135-194 (343)
18 TIGR00606 rad50 rad50. This fa 85.0 1.1E+02 0.0025 38.1 27.9 91 361-452 837-928 (1311)
19 PRK03918 chromosome segregatio 84.7 86 0.0019 36.5 35.6 133 354-499 301-433 (880)
20 PRK11637 AmiB activator; Provi 84.5 11 0.00024 40.8 11.7 81 360-442 68-148 (428)
21 COG0419 SbcC ATPase involved i 83.0 1.1E+02 0.0024 36.6 28.8 71 353-423 593-671 (908)
22 PHA02562 46 endonuclease subun 81.3 92 0.002 34.3 27.4 19 159-177 145-163 (562)
23 PF10146 zf-C4H2: Zinc finger- 80.3 12 0.00025 38.7 9.4 69 353-421 32-103 (230)
24 KOG1853 LIS1-interacting prote 79.1 49 0.0011 35.7 13.6 101 365-494 50-153 (333)
25 PF05667 DUF812: Protein of un 79.0 1.4E+02 0.003 35.0 23.6 259 168-453 251-536 (594)
26 PF12128 DUF3584: Protein of u 78.2 1.9E+02 0.0041 36.1 31.6 138 306-443 728-878 (1201)
27 PF11932 DUF3450: Protein of u 78.0 42 0.00092 34.0 12.5 73 350-422 46-118 (251)
28 PF14362 DUF4407: Domain of un 74.6 81 0.0017 32.6 13.7 50 327-378 111-160 (301)
29 PF06428 Sec2p: GDP/GTP exchan 72.0 18 0.00039 33.3 7.4 53 362-414 10-63 (100)
30 PF10211 Ax_dynein_light: Axon 71.2 39 0.00084 33.7 10.1 95 270-392 65-159 (189)
31 KOG1655 Protein involved in va 70.9 64 0.0014 33.6 11.6 105 328-438 72-183 (218)
32 PF09726 Macoilin: Transmembra 70.3 2.4E+02 0.0052 33.7 18.6 102 394-497 544-659 (697)
33 PRK11281 hypothetical protein; 70.3 3E+02 0.0065 34.8 19.1 97 308-405 74-177 (1113)
34 PF08317 Spc7: Spc7 kinetochor 70.1 1.4E+02 0.003 31.8 14.5 53 151-217 57-109 (325)
35 TIGR02169 SMC_prok_A chromosom 70.0 2.4E+02 0.0052 33.5 31.6 10 134-143 113-122 (1164)
36 PF11068 YlqD: YlqD protein; 68.4 43 0.00092 32.2 9.3 61 353-413 20-85 (131)
37 PRK04863 mukB cell division pr 68.1 2.1E+02 0.0046 37.0 17.5 19 165-183 192-210 (1486)
38 PF04111 APG6: Autophagy prote 67.6 28 0.00062 37.1 8.8 34 351-384 55-88 (314)
39 TIGR02680 conserved hypothetic 67.5 3.5E+02 0.0076 34.5 22.7 30 217-248 747-776 (1353)
40 PF00038 Filament: Intermediat 66.6 1.6E+02 0.0035 30.2 18.0 80 315-394 167-250 (312)
41 KOG0963 Transcription factor/C 65.4 3E+02 0.0065 32.9 24.7 268 228-539 100-392 (629)
42 TIGR00606 rad50 rad50. This fa 64.1 3.8E+02 0.0083 33.8 32.8 64 349-412 898-965 (1311)
43 PF10458 Val_tRNA-synt_C: Valy 63.8 34 0.00074 28.6 6.9 50 357-406 1-54 (66)
44 PF07798 DUF1640: Protein of u 63.3 1.5E+02 0.0033 28.9 12.7 68 360-427 73-152 (177)
45 PRK10884 SH3 domain-containing 62.8 60 0.0013 33.1 9.7 75 356-437 89-163 (206)
46 PF12718 Tropomyosin_1: Tropom 62.3 97 0.0021 29.8 10.5 85 356-441 31-122 (143)
47 smart00787 Spc7 Spc7 kinetocho 61.3 2.4E+02 0.0052 30.5 14.3 39 170-215 64-102 (312)
48 PF10455 BAR_2: Bin/amphiphysi 60.8 54 0.0012 35.3 9.3 77 372-486 179-256 (289)
49 KOG0994 Extracellular matrix g 60.6 2E+02 0.0043 36.9 14.8 75 147-223 1494-1588(1758)
50 PF05911 DUF869: Plant protein 60.3 3.9E+02 0.0085 32.6 18.9 213 216-497 11-226 (769)
51 PF13166 AAA_13: AAA domain 60.1 3.1E+02 0.0068 31.4 19.9 47 361-411 425-471 (712)
52 KOG4674 Uncharacterized conser 57.4 6.2E+02 0.013 33.9 27.0 223 188-440 634-871 (1822)
53 PF04111 APG6: Autophagy prote 56.8 79 0.0017 33.8 9.8 41 353-393 43-83 (314)
54 PRK03918 chromosome segregatio 56.3 3.9E+02 0.0085 31.3 24.8 48 356-403 196-243 (880)
55 PF07106 TBPIP: Tat binding pr 56.1 59 0.0013 31.1 8.0 29 417-445 113-141 (169)
56 KOG0161 Myosin class II heavy 56.0 6.6E+02 0.014 33.9 27.3 73 351-423 1046-1118(1930)
57 PF09304 Cortex-I_coil: Cortex 55.6 59 0.0013 30.8 7.6 48 360-425 30-77 (107)
58 PF03962 Mnd1: Mnd1 family; I 55.6 2.3E+02 0.0049 28.4 12.3 88 311-406 66-153 (188)
59 PF13514 AAA_27: AAA domain 55.4 4.9E+02 0.011 32.2 24.7 156 409-575 899-1080(1111)
60 PF07111 HCR: Alpha helical co 54.7 4.1E+02 0.0089 32.3 15.7 104 474-581 155-261 (739)
61 PRK00409 recombination and DNA 53.2 1E+02 0.0022 36.8 10.9 56 360-415 520-575 (782)
62 smart00338 BRLZ basic region l 53.0 40 0.00086 27.7 5.5 44 337-380 14-60 (65)
63 PF15444 TMEM247: Transmembran 52.2 30 0.00066 35.6 5.5 74 579-653 32-115 (218)
64 PF13600 DUF4140: N-terminal d 51.3 31 0.00066 30.4 4.9 35 358-392 68-102 (104)
65 PRK03947 prefoldin subunit alp 51.3 2.1E+02 0.0045 26.6 10.7 91 304-395 10-136 (140)
66 TIGR01069 mutS2 MutS2 family p 51.2 93 0.002 37.2 10.1 69 354-422 509-577 (771)
67 PRK14127 cell division protein 51.1 20 0.00043 33.6 3.8 61 337-397 14-74 (109)
68 TIGR01000 bacteriocin_acc bact 50.1 1.4E+02 0.0031 32.7 10.7 24 136-161 15-38 (457)
69 PF09177 Syntaxin-6_N: Syntaxi 49.8 1.5E+02 0.0032 26.2 8.9 88 316-412 7-97 (97)
70 KOG1029 Endocytic adaptor prot 49.0 4.5E+02 0.0097 32.8 14.8 66 368-440 508-576 (1118)
71 PF10168 Nup88: Nuclear pore c 48.4 3E+02 0.0066 33.0 13.6 73 318-391 590-670 (717)
72 PF11559 ADIP: Afadin- and alp 46.2 2.3E+02 0.0051 26.6 10.1 46 351-396 57-102 (151)
73 PRK14143 heat shock protein Gr 45.8 1.4E+02 0.0031 31.3 9.3 79 349-427 56-139 (238)
74 KOG0244 Kinesin-like protein [ 45.5 7.1E+02 0.015 31.2 16.6 93 357-456 513-609 (913)
75 KOG0977 Nuclear envelope prote 44.9 2.4E+02 0.0052 33.1 11.7 20 475-494 239-258 (546)
76 PF11932 DUF3450: Protein of u 44.8 1.2E+02 0.0026 30.8 8.6 54 359-412 62-115 (251)
77 PF04012 PspA_IM30: PspA/IM30 44.6 3.2E+02 0.007 27.0 13.7 79 322-400 59-138 (221)
78 PRK00409 recombination and DNA 44.5 1.3E+02 0.0028 36.0 10.0 75 350-424 517-595 (782)
79 PF09304 Cortex-I_coil: Cortex 44.4 67 0.0015 30.4 6.1 64 361-428 3-66 (107)
80 COG1579 Zn-ribbon protein, pos 44.3 3.8E+02 0.0082 28.4 12.1 20 462-481 198-217 (239)
81 PF12889 DUF3829: Protein of u 43.4 1.1E+02 0.0023 30.6 7.8 75 178-252 109-209 (276)
82 PF15188 CCDC-167: Coiled-coil 42.9 68 0.0015 29.1 5.7 59 358-420 3-61 (85)
83 PF09787 Golgin_A5: Golgin sub 41.6 5.8E+02 0.013 29.0 16.3 91 358-456 107-203 (511)
84 PF12455 Dynactin: Dynein asso 40.4 96 0.0021 32.5 7.3 70 400-477 120-204 (274)
85 KOG0709 CREB/ATF family transc 40.0 62 0.0013 37.1 6.1 77 287-382 225-315 (472)
86 PRK14151 heat shock protein Gr 39.9 2.8E+02 0.006 27.8 10.0 77 356-434 23-99 (176)
87 PF03114 BAR: BAR domain; Int 39.4 3.2E+02 0.007 25.5 15.1 161 233-412 24-189 (229)
88 COG4942 Membrane-bound metallo 39.3 6.4E+02 0.014 28.9 14.6 48 350-397 207-254 (420)
89 TIGR01069 mutS2 MutS2 family p 39.1 2.3E+02 0.005 34.0 10.9 75 350-424 512-590 (771)
90 PF03961 DUF342: Protein of un 39.0 1.4E+02 0.003 33.0 8.5 69 353-421 326-408 (451)
91 PF09730 BicD: Microtubule-ass 38.6 7.7E+02 0.017 30.0 14.8 66 351-416 255-321 (717)
92 PF05103 DivIVA: DivIVA protei 38.6 20 0.00043 32.1 1.8 58 337-394 9-66 (131)
93 PF15186 TEX13: Testis-express 38.1 76 0.0016 31.7 5.7 105 293-400 20-143 (152)
94 PF06637 PV-1: PV-1 protein (P 37.4 1.9E+02 0.0041 32.9 9.2 79 308-386 279-375 (442)
95 COG0419 SbcC ATPase involved i 37.3 8.3E+02 0.018 29.6 37.2 60 141-200 131-195 (908)
96 PRK14158 heat shock protein Gr 37.1 2.7E+02 0.006 28.4 9.6 91 336-426 10-111 (194)
97 PRK09039 hypothetical protein; 36.7 5.9E+02 0.013 27.7 14.6 67 341-407 69-139 (343)
98 PF04871 Uso1_p115_C: Uso1 / p 36.0 3.3E+02 0.0072 26.1 9.5 60 354-413 9-69 (136)
99 PF03836 RasGAP_C: RasGAP C-te 35.8 12 0.00026 35.3 0.0 73 344-416 21-93 (142)
100 PRK14162 heat shock protein Gr 35.5 2.1E+02 0.0046 29.2 8.6 71 355-425 34-109 (194)
101 KOG3759 Uncharacterized RUN do 35.5 50 0.0011 38.2 4.5 49 364-415 178-226 (621)
102 smart00787 Spc7 Spc7 kinetocho 35.4 3.2E+02 0.0069 29.6 10.3 11 269-279 141-151 (312)
103 PRK04863 mukB cell division pr 34.2 1.2E+03 0.026 30.6 22.8 63 161-230 147-213 (1486)
104 PF01025 GrpE: GrpE; InterPro 34.0 81 0.0018 29.6 5.1 36 359-394 10-45 (165)
105 PRK12704 phosphodiesterase; Pr 33.9 4.5E+02 0.0098 30.3 11.7 23 454-476 179-201 (520)
106 TIGR02231 conserved hypothetic 33.9 2.6E+02 0.0056 31.4 9.7 36 358-393 69-104 (525)
107 KOG0963 Transcription factor/C 33.8 7.2E+02 0.016 30.0 13.3 49 347-395 290-338 (629)
108 TIGR02680 conserved hypothetic 33.4 1.2E+03 0.025 30.1 18.2 49 355-403 923-971 (1353)
109 PF06008 Laminin_I: Laminin Do 33.2 5.5E+02 0.012 26.3 24.2 108 173-298 6-115 (264)
110 TIGR03319 YmdA_YtgF conserved 33.2 4.7E+02 0.01 30.1 11.7 10 565-574 358-367 (514)
111 PF05700 BCAS2: Breast carcino 33.1 4.3E+02 0.0092 26.9 10.3 54 243-297 77-131 (221)
112 PF05615 THOC7: Tho complex su 33.1 2.6E+02 0.0055 26.1 8.1 74 339-427 56-129 (139)
113 PRK06800 fliH flagellar assemb 33.0 4E+02 0.0087 28.0 10.0 82 353-441 31-113 (228)
114 TIGR02168 SMC_prok_B chromosom 32.7 9.1E+02 0.02 28.7 31.8 9 135-143 116-124 (1179)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.7 4.2E+02 0.0091 24.8 12.7 111 309-420 9-119 (132)
116 TIGR00237 xseA exodeoxyribonuc 32.4 7.5E+02 0.016 27.6 13.2 29 458-486 351-379 (432)
117 KOG0018 Structural maintenance 32.3 6.7E+02 0.015 32.0 13.3 35 185-220 264-298 (1141)
118 PRK11578 macrolide transporter 32.1 2.4E+02 0.0053 29.8 8.8 31 358-388 97-127 (370)
119 PRK14154 heat shock protein Gr 31.6 4.7E+02 0.01 27.2 10.3 67 358-426 57-123 (208)
120 PF11559 ADIP: Afadin- and alp 31.2 4.5E+02 0.0098 24.7 9.7 64 357-420 56-119 (151)
121 PRK09465 tolC outer membrane c 31.2 4.5E+02 0.0098 27.8 10.5 84 351-437 333-416 (446)
122 PF08614 ATG16: Autophagy prot 31.2 1.7E+02 0.0037 28.9 7.0 44 356-399 133-176 (194)
123 PF10186 Atg14: UV radiation r 31.0 5.5E+02 0.012 25.7 11.0 36 539-574 262-298 (302)
124 PRK14147 heat shock protein Gr 30.9 4.8E+02 0.01 26.1 10.0 67 358-426 23-89 (172)
125 PRK13042 superantigen-like pro 30.7 86 0.0019 34.0 5.2 23 614-636 74-96 (291)
126 PF05082 Rop-like: Rop-like; 30.5 74 0.0016 27.9 3.8 28 369-396 4-31 (66)
127 PRK06569 F0F1 ATP synthase sub 30.0 4E+02 0.0087 26.5 9.2 66 356-424 44-110 (155)
128 COG4942 Membrane-bound metallo 29.9 1.9E+02 0.004 33.0 7.7 38 358-395 71-108 (420)
129 PF10168 Nup88: Nuclear pore c 29.8 1.1E+03 0.023 28.6 14.9 78 415-500 634-711 (717)
130 PF05266 DUF724: Protein of un 29.3 4.6E+02 0.0099 26.6 9.7 26 286-311 52-77 (190)
131 PF03962 Mnd1: Mnd1 family; I 29.3 6E+02 0.013 25.5 12.5 37 286-322 17-53 (188)
132 PRK01156 chromosome segregatio 29.1 1.1E+03 0.023 28.3 24.9 38 364-401 519-556 (895)
133 PRK14139 heat shock protein Gr 29.0 5.8E+02 0.013 26.0 10.4 66 358-425 37-102 (185)
134 KOG0964 Structural maintenance 28.4 1.4E+03 0.03 29.5 19.3 115 326-444 312-442 (1200)
135 cd07596 BAR_SNX The Bin/Amphip 28.4 5.1E+02 0.011 24.4 11.5 11 430-440 207-217 (218)
136 PF10376 Mei5: Double-strand r 28.3 3.2E+02 0.0069 28.4 8.6 94 339-432 113-218 (221)
137 PF07106 TBPIP: Tat binding pr 28.1 2.1E+02 0.0045 27.5 6.8 31 357-387 83-113 (169)
138 KOG2273 Membrane coat complex 28.0 8.9E+02 0.019 27.1 21.0 64 360-440 431-496 (503)
139 PF01920 Prefoldin_2: Prefoldi 28.0 1.6E+02 0.0034 25.4 5.5 36 353-388 62-97 (106)
140 PF05276 SH3BP5: SH3 domain-bi 27.7 7E+02 0.015 26.4 11.0 59 366-428 134-206 (239)
141 PRK14145 heat shock protein Gr 27.7 4.3E+02 0.0092 27.2 9.2 69 356-424 41-114 (196)
142 COG5509 Uncharacterized small 27.1 1.1E+02 0.0023 26.9 4.2 34 357-390 29-62 (65)
143 PHA03093 EEV glycoprotein; Pro 27.0 28 0.00061 35.5 0.9 22 423-444 125-153 (185)
144 PF05130 FlgN: FlgN protein; 26.9 4.3E+02 0.0093 23.1 8.5 91 332-422 22-125 (143)
145 KOG0995 Centromere-associated 26.9 1.2E+03 0.025 28.1 22.3 253 195-499 292-560 (581)
146 PF07426 Dynactin_p22: Dynacti 26.8 1.7E+02 0.0037 29.2 6.2 44 359-402 4-58 (174)
147 PF12325 TMF_TATA_bd: TATA ele 26.6 4.4E+02 0.0096 25.1 8.5 21 360-380 37-57 (120)
148 TIGR01843 type_I_hlyD type I s 26.4 7.7E+02 0.017 25.8 16.8 38 358-395 142-179 (423)
149 PF10473 CENP-F_leu_zip: Leuci 26.3 6.2E+02 0.014 24.8 9.7 51 372-426 57-107 (140)
150 PF11471 Sugarporin_N: Maltopo 26.2 1.1E+02 0.0024 26.0 4.1 28 365-392 30-57 (60)
151 PRK00286 xseA exodeoxyribonucl 25.9 9.1E+02 0.02 26.5 12.7 30 461-490 359-388 (438)
152 cd00890 Prefoldin Prefoldin is 25.6 2.3E+02 0.0051 25.2 6.3 36 355-390 89-124 (129)
153 cd03407 Band_7_4 A subgroup of 25.5 2.4E+02 0.0052 28.8 7.2 60 26-94 178-239 (262)
154 cd09238 V_Alix_like_1 Protein- 25.4 8.8E+02 0.019 26.1 15.0 73 351-424 193-272 (339)
155 PF06657 Cep57_MT_bd: Centroso 24.9 2.9E+02 0.0063 24.4 6.6 62 350-420 14-75 (79)
156 PRK12705 hypothetical protein; 24.9 1.2E+03 0.025 27.4 14.7 26 452-477 165-190 (508)
157 KOG4302 Microtubule-associated 24.7 9E+02 0.02 29.3 12.3 111 303-413 50-192 (660)
158 COG4026 Uncharacterized protei 24.5 4.2E+02 0.0091 28.6 8.7 39 364-402 146-184 (290)
159 PF10473 CENP-F_leu_zip: Leuci 24.4 6.9E+02 0.015 24.6 15.4 134 347-499 4-137 (140)
160 PRK14155 heat shock protein Gr 23.9 6.1E+02 0.013 26.2 9.6 69 356-426 16-84 (208)
161 PF05546 She9_MDM33: She9 / Md 23.8 8.7E+02 0.019 25.5 13.4 115 360-493 32-153 (207)
162 PF04156 IncA: IncA protein; 23.6 6.7E+02 0.014 24.1 13.6 31 357-387 92-122 (191)
163 cd07624 BAR_SNX7_30 The Bin/Am 23.5 7.4E+02 0.016 24.6 17.8 156 307-484 18-192 (200)
164 cd07639 BAR_ACAP1 The Bin/Amph 23.4 8.3E+02 0.018 25.2 12.2 115 433-580 37-151 (200)
165 COG1579 Zn-ribbon protein, pos 23.4 9.1E+02 0.02 25.7 16.2 171 361-581 18-190 (239)
166 PF00170 bZIP_1: bZIP transcri 22.8 3.8E+02 0.0083 22.0 6.6 42 325-373 5-46 (64)
167 PF07028 DUF1319: Protein of u 22.6 3.2E+02 0.0069 26.7 6.9 43 354-396 40-82 (126)
168 PF06920 Ded_cyto: Dedicator o 22.5 42 0.0009 32.6 1.1 54 129-191 100-156 (178)
169 PF01920 Prefoldin_2: Prefoldi 22.4 3.1E+02 0.0068 23.5 6.3 30 356-385 72-101 (106)
170 PLN03229 acetyl-coenzyme A car 22.2 1.6E+03 0.034 27.9 16.3 185 233-423 434-683 (762)
171 KOG1924 RhoA GTPase effector D 22.1 8.5E+02 0.018 30.6 11.4 30 462-491 398-436 (1102)
172 cd07666 BAR_SNX7 The Bin/Amphi 22.0 3.7E+02 0.008 28.3 7.8 97 147-247 88-196 (243)
173 PRK14150 heat shock protein Gr 21.9 6E+02 0.013 25.8 9.0 64 361-427 42-110 (193)
174 PF13166 AAA_13: AAA domain 21.8 1.3E+03 0.027 26.7 18.0 58 357-414 414-471 (712)
175 PF00038 Filament: Intermediat 21.7 8.9E+02 0.019 24.9 14.0 98 343-440 37-137 (312)
176 PF03670 UPF0184: Uncharacteri 21.5 3.1E+02 0.0068 25.1 6.2 43 360-402 26-72 (83)
177 KOG1656 Protein involved in gl 21.4 3.2E+02 0.007 28.8 7.1 123 438-585 25-151 (221)
178 cd07605 I-BAR_IMD Inverse (I)- 21.4 6.9E+02 0.015 26.0 9.5 137 173-314 65-221 (223)
179 PF10458 Val_tRNA-synt_C: Valy 21.4 2.8E+02 0.0062 23.2 5.6 28 365-392 2-29 (66)
180 PF15112 DUF4559: Domain of un 21.3 4.5E+02 0.0098 29.0 8.4 87 186-279 166-268 (307)
181 TIGR03752 conj_TIGR03752 integ 21.3 4.6E+02 0.01 30.4 8.9 76 310-385 59-134 (472)
182 KOG0980 Actin-binding protein 21.2 1.8E+03 0.038 28.1 21.8 132 131-281 286-437 (980)
183 COG2433 Uncharacterized conser 21.2 5.9E+02 0.013 30.7 9.8 87 354-448 430-516 (652)
184 PF09744 Jnk-SapK_ap_N: JNK_SA 21.2 5.5E+02 0.012 25.5 8.3 50 344-393 73-122 (158)
185 COG5185 HEC1 Protein involved 21.1 2.4E+02 0.0053 33.0 6.7 63 360-430 344-406 (622)
186 PF04136 Sec34: Sec34-like fam 21.1 7.8E+02 0.017 24.0 9.5 129 359-496 6-144 (157)
187 PF05278 PEARLI-4: Arabidopsis 21.0 3.6E+02 0.0077 29.2 7.5 53 360-416 207-259 (269)
188 PF08647 BRE1: BRE1 E3 ubiquit 20.9 3.1E+02 0.0068 24.6 6.2 34 361-394 46-79 (96)
189 PRK14140 heat shock protein Gr 20.7 8.8E+02 0.019 24.9 9.9 35 360-394 37-71 (191)
190 KOG0994 Extracellular matrix g 20.6 2.1E+03 0.045 28.8 29.7 67 367-433 1577-1646(1758)
191 KOG2751 Beclin-like protein [S 20.4 6.1E+02 0.013 29.3 9.5 27 556-582 363-389 (447)
192 PF09730 BicD: Microtubule-ass 20.1 1.6E+03 0.036 27.4 17.4 56 356-411 401-463 (717)
193 PRK11377 dihydroxyacetone kina 20.1 5.6E+02 0.012 29.3 9.3 30 427-456 311-340 (473)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.47 E-value=1.5 Score=53.19 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHhhhchHHHHHHhhhhhcchhhHH
Q 005674 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQI---VEHLKTKEDELLKSIAACRVESDVLS 433 (684)
Q Consensus 357 El~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqi---v~hLK~KEdELskSIasc~vEA~vv~ 433 (684)
.+..+|..++.+.+++++++.-+...+.....++.++.++.+.....-.++ +..++.+.++|-+.|..+..+..-++
T Consensus 825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777777666665555444443333 33344555566666666665555555
Q ss_pred HHHHhhchhhhHHHhHH---HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhcccCCCccCCCC
Q 005674 434 TWINFLEDSWVLQCSQM---ELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEGSENASSG 510 (684)
Q Consensus 434 tWInFLEdTW~LQss~~---e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk~l~~~~e~~~~~ 510 (684)
.=|..+..-+..-.... +..-.....++.....+++.. ++..-|.+|..-.+.|...+- .+
T Consensus 905 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~le~~i~~lg~VN~------~A 968 (1163)
T COG1196 905 EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLET----------ELEREIERLEEEIEALGPVNL------RA 968 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhH----------HHHHHHHHHHHHHHhccCCCh------hH
Confidence 44444443332111111 000111111111111111111 444555555555555544331 11
Q ss_pred CCccccccCcccchHHHHHhHhHHHHHHHHhhhhhHHHHHhhhcCCCCCCchHHHHHHHHHHH-HHHHhccc
Q 005674 511 DDEHSKELNPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRVKELFDDIEK-LRLEFESI 581 (684)
Q Consensus 511 d~e~Sk~~npRk~LEeeYLe~E~Kii~~fSivD~mk~~fy~~q~~~sRkdd~~vkeLf~~IeK-lR~efEsI 581 (684)
-++-.....-...|..+|=+.+...-+....+..|++ +-..++++.|+.|.+ ++.=|..+
T Consensus 969 iee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~-----------~~~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 969 IEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK-----------EKRERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222333345555555666655555555555555 334567777777754 44444444
No 2
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.05 E-value=12 Score=45.94 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=37.6
Q ss_pred HHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhchhhhH
Q 005674 407 IVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVL 445 (684)
Q Consensus 407 iv~hLK~KEdELskSIasc~vEA~vv~tWInFLEdTW~L 445 (684)
.|.-|+.+-..|-+.|..|.....-|..|=.|+...|.-
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999975
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.35 E-value=14 Score=43.37 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=4.0
Q ss_pred hccCch
Q 005674 177 CLTGGK 182 (684)
Q Consensus 177 CL~Ggk 182 (684)
+++||.
T Consensus 654 ~~tgG~ 659 (1164)
T TIGR02169 654 AMTGGS 659 (1164)
T ss_pred CccCCC
Confidence 567774
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.08 E-value=15 Score=42.77 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=12.5
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005674 362 ISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ 394 (684)
Q Consensus 362 I~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~r 394 (684)
+..++++.++|..++......+.....++..++
T Consensus 861 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 893 (1179)
T TIGR02168 861 IEELEELIEELESELEALLNERASLEEALALLR 893 (1179)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.86 E-value=12 Score=45.71 Aligned_cols=68 Identities=28% Similarity=0.409 Sum_probs=47.8
Q ss_pred ccCchhHHHHHHHhHHHHHHHhhcchhhhccChHHHHHHHHHhhhhccccchhhhhhHHHHHHHHHHhhhh
Q 005674 178 LTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMK 248 (684)
Q Consensus 178 L~GgkevH~aivssiqdLA~afs~y~DEVLvKReELLqfaQ~AIsGLK~nadi~riD~Ea~~L~~kl~~~~ 248 (684)
+....+-|..+...++...+....++.++--.++++..+ |.....++. .+..++.++..++.+++...
T Consensus 248 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~-~~~~~~~~~--~~~~le~~~~~~~~~~~~~~ 315 (1163)
T COG1196 248 LSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL-QEELLELKE--EIEELEGEISLLRERLEELE 315 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777666666777777 777666665 77788888888887777665
No 6
>PRK11637 AmiB activator; Provisional
Probab=92.27 E-value=16 Score=39.58 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005674 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE 396 (684)
Q Consensus 359 ~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEE 396 (684)
..+|..++.+.++++++|+.++..++....++..++++
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 7
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.00 E-value=13 Score=39.48 Aligned_cols=189 Identities=19% Similarity=0.276 Sum_probs=111.2
Q ss_pred CchhHHHHHHHhHHHHHHHhhcchhhhccChHHHHHHHHHhhhhccccchhhhhhHHHHHHHHHHhhhhhhccCCchhhh
Q 005674 180 GGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLE 259 (684)
Q Consensus 180 GgkevH~aivssiqdLA~afs~y~DEVLvKReELLqfaQ~AIsGLK~nadi~riD~Ea~~L~~kl~~~~~~~~~~~~~~~ 259 (684)
++--||.++.+.. ++. -+-=+.-+|...++ |-.+|.+||+.+..+.+|++..+.--.++...-.
T Consensus 20 ~~t~V~a~~~~~~--i~~------------~ds~l~~~~~~~~~--~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik 83 (265)
T COG3883 20 FLTTVFAALLSDK--IQN------------QDSKLSELQKEKKN--IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIK 83 (265)
T ss_pred hcchhhhhhhhhH--HHh------------hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556788877763 222 22222333444433 4578999999999999999887743222111111
Q ss_pred hhhhhh--hHHHHHHHHHHHHH----HHHHHHH---HHHHHhhhhccCCCChhhhhhhhhhHHHHHHhhhcchHHHhhhH
Q 005674 260 QASEKT--TKATIEALKEALAQ----IRVCTRL---EGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRI 330 (684)
Q Consensus 260 k~~~~~--~~a~~ea~keal~q----irlCSrl---E~LlLkKksl~~GDS~e~haqkVDKLKvLseSLanSssKAEkRI 330 (684)
+....+ ....|..-.+.|.. +..-..- =+.+|.-|+|+ ..|+|+-++ |.+..|.+-|
T Consensus 84 ~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfs---------D~IsRvtAi-----~~iv~aDk~i 149 (265)
T COG3883 84 KLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFS---------DLISRVTAI-----SVIVDADKKI 149 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHH---------HHHHHHHHH-----HHHHHHhHHH
Confidence 111000 00112211111111 1111110 12334444444 667777763 5678999999
Q ss_pred hhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 005674 331 SDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFD 401 (684)
Q Consensus 331 ~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFd 401 (684)
+++--..+..|.- |-.-+...-..|.+=+.+||.+.+.|+.+....|.-+.++.++...+..|...-.
T Consensus 150 le~qk~dk~~Le~---kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 150 LEQQKEDKKSLEE---KQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9987766666653 3334444555677888888999999999999999999999999888888775543
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.55 E-value=52 Score=43.19 Aligned_cols=246 Identities=23% Similarity=0.288 Sum_probs=124.6
Q ss_pred HHHhhhhccccchhhhhhHHHHHHHHHHhhhhhhccCCchhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhh
Q 005674 217 AQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQ-IRVCTRLEGLLLKKKL 295 (684)
Q Consensus 217 aQ~AIsGLK~nadi~riD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~a~~ea~keal~q-irlCSrlE~LlLkKks 295 (684)
+.--|...+....+...|.|+..|+.++..+...+..-.....+...... .+..-|.+ -.+|.-.|.++
T Consensus 827 vkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~-----~l~~~l~~e~~~~~~aee~~----- 896 (1930)
T KOG0161|consen 827 VKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKN-----DLQEQLQAEKENLAEAEELL----- 896 (1930)
T ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-----
Confidence 44556677778888999999999999999988766533332222221111 11111111 12222222211
Q ss_pred ccCCCChhhhhhhhhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHH
Q 005674 296 LSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAE 375 (684)
Q Consensus 296 l~~GDS~e~haqkVDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAe 375 (684)
++++ .....+|+-+.+-..|-++.-. +...+...=+++-.||.+|.++.+++|..
T Consensus 897 --------------~~~~-------~~k~~le~~l~~~~~~~e~~ee----~~~~le~~~~~~~~e~~~l~~~~~~~E~~ 951 (1930)
T KOG0161|consen 897 --------------ERLR-------AEKQELEKELKELKERLEEEEE----KNAELERKKRKLEQEVQELKEQLEELELT 951 (1930)
T ss_pred --------------HHHH-------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1112222222222222222111 11122222334458899999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhch---HHHHHHhhhhhcchhhHHHHHHhhch-hhhHHHhHHH
Q 005674 376 LKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKE---DELLKSIAACRVESDVLSTWINFLED-SWVLQCSQME 451 (684)
Q Consensus 376 LKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KE---dELskSIasc~vEA~vv~tWInFLEd-TW~LQss~~e 451 (684)
+.|+..-.+++..++++++++=.++||.++-..--=|..| .+|.--+..-.-++.-++.=.+=|+- -=.|+..+.
T Consensus 952 ~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le- 1030 (1930)
T KOG0161|consen 952 LQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLE- 1030 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999988888887766544333222 22222333333333333333332322 223444444
Q ss_pred HHHhhhhHHHHhhHHHH-------------HHHHHHHHHHHHHhhchhhHHHHHHHHhhhc
Q 005674 452 LKEKQVSEELVKHEDYF-------------VNLAISLLSAYKKELGPSISRIGKFVENLKN 499 (684)
Q Consensus 452 ~kekq~~dELer~~d~F-------------v~La~~~Ls~~keeL~psI~rI~~~V~nLk~ 499 (684)
++++.+.|+|+...-| .+.-+++|....+-...-+.++..-+++++.
T Consensus 1031 -~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~ 1090 (1930)
T KOG0161|consen 1031 -REKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQA 1090 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5666666666433322 2334444444444444444444444444443
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=91.29 E-value=35 Score=39.87 Aligned_cols=21 Identities=10% Similarity=0.344 Sum_probs=14.6
Q ss_pred HhhccCCChhHHHHHHHHHhh
Q 005674 156 SMILEAPNEEEISLLLEMFGL 176 (684)
Q Consensus 156 SmIleaP~eEEvsLLlEiFgl 176 (684)
..++..+..+=..++=+|||+
T Consensus 141 ~~~l~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 141 NKLINATPSDRQDMIDDLLQL 161 (880)
T ss_pred HHHHcCCHHHHHHHHHHHhCC
Confidence 455666666666778888887
No 10
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.16 E-value=27 Score=40.58 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHhhhcccCCCccCCCCCCccccccCcccchHHHHHhHhHHHHHHHHhhhhhHHHHHhhhcCCCCCCchHH
Q 005674 485 PSISRIGKFVENLKNLSEGSENASSGDDEHSKELNPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRV 564 (684)
Q Consensus 485 psI~rI~~~V~nLk~l~~~~e~~~~~d~e~Sk~~npRk~LEeeYLe~E~Kii~~fSivD~mk~~fy~~q~~~sRkdd~~v 564 (684)
-++.||.-+|.|++. -+++..|.++-=|.|+.|-=...-|.-.||.++|.+ +|-.- |.|+-+
T Consensus 488 ~Yt~RIlEIv~NI~K----------Qk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEl---ifrdA-----KkDe~~ 549 (594)
T PF05667_consen 488 AYTRRILEIVKNIRK----------QKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDEL---IFRDA-----KKDEAA 549 (594)
T ss_pred HHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHh-----hcCHHH
Confidence 367899999999987 234556666667899999989999999999999986 55444 478899
Q ss_pred HHHHHHHHHHHHHhccc
Q 005674 565 KELFDDIEKLRLEFESI 581 (684)
Q Consensus 565 keLf~~IeKlR~efEsI 581 (684)
|..+--+..|+..|+.|
T Consensus 550 rkaYK~La~lh~~c~~L 566 (594)
T PF05667_consen 550 RKAYKLLASLHENCSQL 566 (594)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888764
No 11
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.54 E-value=16 Score=40.04 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcc
Q 005674 354 KEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVE 428 (684)
Q Consensus 354 ~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vE 428 (684)
.++.....|..++++.++|..+.+.....++..+..+.+++.+.+-++++.+ .++.+-..+.+.+..+..+
T Consensus 207 ~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~----~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 207 QRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALN----KLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3334445566677777777777777766776667777777766665655533 3333333344444444443
No 12
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.92 E-value=42 Score=38.55 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHhhhcccCCCccC
Q 005674 468 FVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEGSENA 507 (684)
Q Consensus 468 Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk~l~~~~e~~ 507 (684)
|.++.-+....++..+.-++.+|...-+.|..+......+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444555666666666666666666665554333
No 13
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.38 E-value=53 Score=37.72 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=47.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhh
Q 005674 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAA 424 (684)
Q Consensus 349 nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIas 424 (684)
+....-..++..+|..++.+.+.++.++..+...+..+..++..++++..+-.-.-.+-...|+.+.+++-+....
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e 280 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKA 280 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667777888888888888888888888888888888777655543322222222555555555444443
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=87.60 E-value=64 Score=37.76 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=23.1
Q ss_pred HhHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 005674 447 CSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVE 495 (684)
Q Consensus 447 ss~~e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~ 495 (684)
..|....-.++.++++++....-.+-.. |..-...+.-+..+|..+-.
T Consensus 641 ~~~~~~~~e~l~~~~~~~~~~~~~l~~~-l~~~~~~~~~l~~~i~~~~~ 688 (880)
T PRK02224 641 AEFDEARIEEAREDKERAEEYLEQVEEK-LDELREERDDLQAEIGAVEN 688 (880)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666665555444333 44444444444444444333
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.74 E-value=65 Score=40.60 Aligned_cols=311 Identities=23% Similarity=0.317 Sum_probs=154.2
Q ss_pred HHHHHhhhccCchhHHH-----HH-H-----HhHHHHHHHhhcchhhhccChHHHHHH------HHHhhhhccc-----c
Q 005674 170 LLEMFGLCLTGGKEVHH-----AI-T-----SSIQDLATAISKYQDEVLVKREELLQF------AQTAITGLKM-----N 227 (684)
Q Consensus 170 LlEiFglCL~GgkevH~-----ai-v-----ssiqdLA~afs~y~DEVLvKReELLqf------aQ~AIsGLK~-----n 227 (684)
|+|+-|.--+||+-|-. .+ | .++++|..+++.-.+..=+.++++.+. .-..|--|++ -
T Consensus 747 lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~ 826 (1293)
T KOG0996|consen 747 LIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLT 826 (1293)
T ss_pred eecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHH
Confidence 56667766677666543 33 2 278899999999998877777777443 2223333333 5
Q ss_pred chhhhhhHHHHHHHHHHhhhhhhccCCchhhhhhhhhhhHHHHHHHHHHHHHHH---H-HHHHHHHHHhhhhccCCCChh
Q 005674 228 SDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIR---V-CTRLEGLLLKKKLLSYGDSPE 303 (684)
Q Consensus 228 adi~riD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~a~~ea~keal~qir---l-CSrlE~LlLkKksl~~GDS~e 303 (684)
+++-|++.+...|++.|-+..+-......+.....+. ...++.++.-+.++. . -.+.++|=-+=-.|. |-...
T Consensus 827 ~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~--~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~-~e~~q 903 (1293)
T KOG0996|consen 827 ASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKEL--EEQIEELKKEVEELQEKAAKKARIKELQNKIDEIG-GEKVQ 903 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh-chhhH
Confidence 6777777777788888777775422222221111111 124556655555442 0 112222222222222 66667
Q ss_pred hhhhhhhhHHHHHHhhhcchHHHhhhHhhh--hhhhHHhhhhhhcccchhhHHH-HHHHHHHHHHHHhhhHHHHHHHHHh
Q 005674 304 VHAQKVDKLKVLSESLSNSSVKAEKRISDH--RSQKEEALKVRVVKANESSEKE-KEIGAEISELVKQRDHLEAELKKVN 380 (684)
Q Consensus 304 ~haqkVDKLKvLseSLanSssKAEkRI~d~--R~QKEeAL~fRv~K~nEvs~~E-KEl~aEI~~LekqrdeLEAeLKkVN 380 (684)
.|-.||+|+.-=-+-|+.-+.|..-+|.-+ +.||=....-|..+.-+-...| +.|.++..+++....+++.++++-.
T Consensus 904 ~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~ 983 (1293)
T KOG0996|consen 904 AQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAE 983 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 777777766554444555555555544333 3444333333332222211111 2455555566666666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHH-------HhhhhhcchhhHHHHHHhhchhhhHHHhH----
Q 005674 381 LSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK-------SIAACRVESDVLSTWINFLEDSWVLQCSQ---- 449 (684)
Q Consensus 381 ~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELsk-------SIasc~vEA~vv~tWInFLEdTW~LQss~---- 449 (684)
.+|--+..-+.+++.+ +.-++..+++|-+ -+-+|+-+-+ .++--|+.+-.+
T Consensus 984 ~~~~E~k~~~~~~k~~-----------~e~i~k~~~~lk~~rId~~~K~e~~~~~l~-------e~~~~~~~~~k~~~~l 1045 (1293)
T KOG0996|consen 984 ESLKEIKKELRDLKSE-----------LENIKKSENELKAERIDIENKLEAINGELN-------EIESKIKQPEKELKKL 1045 (1293)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhccHHHHHHHHHHHHH-------HHHhhhhhHHHhhCcc
Confidence 5554444444444332 2223344444444 2333443333 333333322111
Q ss_pred ----H-HHHHh-----hhhHHHHhhH-HHHHHHHHHHHHHHHHhh-chhhHHHHHHHHhhhccc
Q 005674 450 ----M-ELKEK-----QVSEELVKHE-DYFVNLAISLLSAYKKEL-GPSISRIGKFVENLKNLS 501 (684)
Q Consensus 450 ----~-e~kek-----q~~dELer~~-d~Fv~La~~~Ls~~keeL-~psI~rI~~~V~nLk~l~ 501 (684)
. |.-+. --.+||+--- +.=++--+-+|-...++| .|=|..|.-|+.-...+.
T Consensus 1046 ~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~ 1109 (1293)
T KOG0996|consen 1046 SLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREVDLGVIAEYAKKVELYL 1109 (1293)
T ss_pred ccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 1 11000 0012222211 111222456778888888 899999999987766544
No 16
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.63 E-value=62 Score=40.28 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhhhHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHH
Q 005674 358 IGAEISELVKQRDHLEAEL-KKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWI 436 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeL-KkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWI 436 (684)
+-.++..|+||...+++++ +.++..+......+.++..|.+-+.+ ++..|..+.+++-..+..-.=|.+-+..-|
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~----~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i 445 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE----QINSLREELNEVKEKAKEEEEEKEHIEGEI 445 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455666777777777888 77888888888899999999988888 777889999999999998888888888887
Q ss_pred Hhhch-----hhhHHHhHHHHHHhhhhHHHHhhHHHHHHHH
Q 005674 437 NFLED-----SWVLQCSQMELKEKQVSEELVKHEDYFVNLA 472 (684)
Q Consensus 437 nFLEd-----TW~LQss~~e~kekq~~dELer~~d~Fv~La 472 (684)
.=|.- +|.|+.. |.-|+ |-+-..+++|..|.
T Consensus 446 ~~l~k~i~~~~~~l~~l----k~~k~-dkvs~FG~~m~~lL 481 (1074)
T KOG0250|consen 446 LQLRKKIENISEELKDL----KKTKT-DKVSAFGPNMPQLL 481 (1074)
T ss_pred HHHHHHHHHHHHHHHHH----Hhccc-chhhhcchhhHHHH
Confidence 77764 4555432 33332 34566777776664
No 17
>PRK09039 hypothetical protein; Validated
Probab=86.25 E-value=25 Score=37.79 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHH
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELsk 420 (684)
.-..|.-|..|.+.|++||..++..|+++..|.+.. +.|+++--..|=.+|..|..+|.+
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~---~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRES---QAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788888888888888888888888888444 444444444444444444555554
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.98 E-value=1.1e+02 Score=38.13 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=71.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhc
Q 005674 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLE 440 (684)
Q Consensus 361 EI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLE 440 (684)
++..|.+..+.+-.+..+.+..++..+.++.+++.++.+..++.. ....|+..-++|...+..|..+-.-+..=|.=|.
T Consensus 837 el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~ 915 (1311)
T TIGR00606 837 ELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE 915 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444444444888889999999999999999999999999555 8889999999999999999888887887777776
Q ss_pred hhh-hHHHhHHHH
Q 005674 441 DSW-VLQCSQMEL 452 (684)
Q Consensus 441 dTW-~LQss~~e~ 452 (684)
..| .+|+.|.++
T Consensus 916 ~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 916 TFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHH
Confidence 654 466666543
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=84.72 E-value=86 Score=36.53 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHH
Q 005674 354 KEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLS 433 (684)
Q Consensus 354 ~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~ 433 (684)
....+...+..|+++++.++.++.++...+......+..+.+....+ +.-...+.-|+...+++..-..-.+ +...+.
T Consensus 301 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~-~l~~l~ 378 (880)
T PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL-KELEKRLEELEERHELYEEAKAKKE-ELERLK 378 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 33356666677777777777777777777776666666666666666 3444555556666665554444433 444445
Q ss_pred HHHHhhchhhhHHHhHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhc
Q 005674 434 TWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKN 499 (684)
Q Consensus 434 tWInFLEdTW~LQss~~e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk~ 499 (684)
.+|+-++- =.|...+.++..+. ++ +.--+..|..-...+.-.|..+....+.|+.
T Consensus 379 ~~l~~~~~-~~l~~~l~~l~~~~---------~~-l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~ 433 (880)
T PRK03918 379 KRLTGLTP-EKLEKELEELEKAK---------EE-IEEEISKITARIGELKKEIKELKKAIEELKK 433 (880)
T ss_pred HHhcccCH-HHHHHHHHHHHHhH---------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44442210 01122222221111 11 2222344445555555566666666666663
No 20
>PRK11637 AmiB activator; Provisional
Probab=84.49 E-value=11 Score=40.81 Aligned_cols=81 Identities=11% Similarity=0.191 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhh
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFL 439 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFL 439 (684)
.++..++++.+.|+.+|..++..|+.....+..+..+-++-...-.+.=..|..+.+.|.+-+.+--.--+ +. ++.||
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~-~~-~l~vL 145 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGE-HT-GLQLI 145 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Cc-HHHHH
Confidence 44445555555555555555556666666666665555555555555555555666666655554433222 22 45555
Q ss_pred chh
Q 005674 440 EDS 442 (684)
Q Consensus 440 EdT 442 (684)
=..
T Consensus 146 l~a 148 (428)
T PRK11637 146 LSG 148 (428)
T ss_pred hcC
Confidence 443
No 21
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.03 E-value=1.1e+02 Score=36.56 Aligned_cols=71 Identities=27% Similarity=0.368 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH-----hHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHhhhchHHHHHHhh
Q 005674 353 EKEKEIGAEISELVKQRDHLEAELKKV-----NLSLAAAQARLRNAQEERE---QFDEANDQIVEHLKTKEDELLKSIA 423 (684)
Q Consensus 353 ~~EKEl~aEI~~LekqrdeLEAeLKkV-----N~sL~aA~aRl~n~rEERd---QFdEA~nqiv~hLK~KEdELskSIa 423 (684)
..++++.+-...++.+...++..+... ...+..+..+|++.++..+ .|+++--.-+.+++.+...+...+.
T Consensus 593 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 671 (908)
T COG0419 593 ERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIR 671 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554555555555555555555 4444445555555555444 3333333334444444444444433
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.25 E-value=92 Score=34.30 Aligned_cols=19 Identities=5% Similarity=0.256 Sum_probs=13.5
Q ss_pred ccCCChhHHHHHHHHHhhh
Q 005674 159 LEAPNEEEISLLLEMFGLC 177 (684)
Q Consensus 159 leaP~eEEvsLLlEiFglC 177 (684)
+.++..+=...|-++||+-
T Consensus 145 ~~~~~~er~~il~~l~~~~ 163 (562)
T PHA02562 145 MQLSAPARRKLVEDLLDIS 163 (562)
T ss_pred hcCChHhHHHHHHHHhCCH
Confidence 4456667788888888854
No 23
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.25 E-value=12 Score=38.72 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HhhhchHHHHHH
Q 005674 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVE---HLKTKEDELLKS 421 (684)
Q Consensus 353 ~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~---hLK~KEdELskS 421 (684)
..-.|+..|+..|...|.....+|..+|.-+|.-.+=++.++.||++..+..++... -||...|++-++
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999999999999999999999999988877644 455555555544
No 24
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=79.13 E-value=49 Score=35.72 Aligned_cols=101 Identities=21% Similarity=0.251 Sum_probs=63.8
Q ss_pred HHHhhhHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhch
Q 005674 365 LVKQRDHLEAELKKVNLS---LAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLED 441 (684)
Q Consensus 365 LekqrdeLEAeLKkVN~s---L~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLEd 441 (684)
|+.|.++||-+++++.+- |.--+-|++. .|+---.|.-.....-||+||..++-|-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Ke------k~e~q~~q~y~q~s~Leddlsqt~aike--------------- 108 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKE------KQEDQRVQFYQQESQLEDDLSQTHAIKE--------------- 108 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 566666666666665333 3333333332 3333333333333344899999888874
Q ss_pred hhhHHHhHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 005674 442 SWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFV 494 (684)
Q Consensus 442 TW~LQss~~e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V 494 (684)
+||--.+ +=.|.||.|||+.-. ++..|+.|---|...|+|+-++-
T Consensus 109 --ql~kyiR--eLEQaNDdLErakRa----ti~sleDfeqrLnqAIErnAfLE 153 (333)
T KOG1853|consen 109 --QLRKYIR--ELEQANDDLERAKRA----TIYSLEDFEQRLNQAIERNAFLE 153 (333)
T ss_pred --HHHHHHH--HHHHhccHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHH
Confidence 2333333 446899999998754 67889999999999999987653
No 25
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.96 E-value=1.4e+02 Score=35.01 Aligned_cols=259 Identities=23% Similarity=0.263 Sum_probs=134.2
Q ss_pred HHHHHHHhhhccCchhHHHHHHHhHHHHHHHhhcchhhhccCh------HHHHHHHHHhhhhc--ccc---chhhhhhHH
Q 005674 168 SLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKR------EELLQFAQTAITGL--KMN---SDIERIDAE 236 (684)
Q Consensus 168 sLLlEiFglCL~GgkevH~aivssiqdLA~afs~y~DEVLvKR------eELLqfaQ~AIsGL--K~n---adi~riD~E 236 (684)
+.+.+.|--+...|-.-|-.- ++.+||+.....|..+...|. +..-+.++.+-... +.. .....-..|
T Consensus 251 ~~l~e~lr~~~~~~~~~~~~~-~s~~dl~~~l~~~~~~~~~k~s~f~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 329 (594)
T PF05667_consen 251 KRLAEQLRQAASASSDNHFRA-SSSDDLADVLHKFSGEAWDKGSRFTHSEKPQEAAPAAAVVPPKEKETEEDEQEEQEQE 329 (594)
T ss_pred HHHHHHHHHhhcccccccccc-cchhHHHHHHHhccccccccccccccccchhhhhhccccCCcccccchhhhHHHHHHH
Confidence 577888877765322211111 777888888777766654222 22222222211111 111 112344567
Q ss_pred HHHHHHHHhhhhhhccCCchhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHH-HHHHHhhhhccCCCChhhhhhhhhhHHH
Q 005674 237 ASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQ-IRVCTRL-EGLLLKKKLLSYGDSPEVHAQKVDKLKV 314 (684)
Q Consensus 237 a~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~a~~ea~keal~q-irlCSrl-E~LlLkKksl~~GDS~e~haqkVDKLKv 314 (684)
..+|+++|+.....-..-.. .-..-+ ..+..+.+-+.+ -.-|.++ +.+-++++.+.-=..++- -|.||+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~---~~~~l~--~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~---ni~kL~~ 401 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEA---EIKMLK--SSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEE---NIAKLQA 401 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH---HHHHHHH
Confidence 77788777776632211000 000000 112222222222 2334445 667777777433222332 2467777
Q ss_pred HHHhhhcchHHHhhhHhhhhhhhHHh--------------hhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 005674 315 LSESLSNSSVKAEKRISDHRSQKEEA--------------LKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVN 380 (684)
Q Consensus 315 LseSLanSssKAEkRI~d~R~QKEeA--------------L~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN 380 (684)
+-++-++-...-...-..||.=..+- .+-...+-.++-..-|++..||..-+.+..+|.+++++.+
T Consensus 402 ~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 402 LVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66655544444333333343322111 1112333344555566666777666666666777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhchhhhHHHhHHHHH
Q 005674 381 LSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELK 453 (684)
Q Consensus 381 ~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLEdTW~LQss~~e~k 453 (684)
-..+ |..|-.=--.||--++.|.+|+.|-+.- --.|+.=||-|.| +|..+|+..-
T Consensus 482 k~~~------------Rs~Yt~RIlEIv~NI~KQk~eI~KIl~D----Tr~lQkeiN~l~g--kL~RtF~v~d 536 (594)
T PF05667_consen 482 KDVN------------RSAYTRRILEIVKNIRKQKEEIEKILSD----TRELQKEINSLTG--KLDRTFTVTD 536 (594)
T ss_pred CCCC------------HHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHhHHHHHH
Confidence 5532 6667777788999999999999887653 3357777888866 4555555433
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=78.23 E-value=1.9e+02 Score=36.12 Aligned_cols=138 Identities=14% Similarity=0.257 Sum_probs=92.5
Q ss_pred hhhhhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHH---HHHHHHHHhhhHHHHHHH---H-
Q 005674 306 AQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIG---AEISELVKQRDHLEAELK---K- 378 (684)
Q Consensus 306 aqkVDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~---aEI~~LekqrdeLEAeLK---k- 378 (684)
++.=.++..+...+++-.+.++.++.+...|....|+=++.=++.+.+++++|. .+|...+..+..+..=-+ .
T Consensus 728 ~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~ 807 (1201)
T PF12128_consen 728 AELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEE 807 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344446677777788888888888888888888888888877766665555332 333333333332211111 1
Q ss_pred ------HhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhchhh
Q 005674 379 ------VNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSW 443 (684)
Q Consensus 379 ------VN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLEdTW 443 (684)
....-.....++...+.++.++++.-+.....++++-.+|-+.+...+-...-+..-++-|.+.|
T Consensus 808 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~ 878 (1201)
T PF12128_consen 808 WDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLL 878 (1201)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123455667788888888888888888888898888888888888887777777766665544
No 27
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.98 E-value=42 Score=34.03 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHh
Q 005674 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422 (684)
Q Consensus 350 Evs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSI 422 (684)
....--.++.+||..|.+|.+.|+.+.+++...+++.+.++..+.+.-++.++...+|.-.|..-.+.|-.-|
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446788999999999999999999999999999999999999999999999999988888777775533
No 28
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=74.57 E-value=81 Score=32.64 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=26.9
Q ss_pred hhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005674 327 EKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKK 378 (684)
Q Consensus 327 EkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKk 378 (684)
+++|.+++.++..+..-.+.. ......+++..+|..|+.+.+++++++.+
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 160 (301)
T PF14362_consen 111 DQKLDEIRQEKQDAIQAQVQA--SFDAQIARLDAEIAALQAEIDQLEKEIDR 160 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554433333 34445555566666666666666665554
No 29
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=72.00 E-value=18 Score=33.29 Aligned_cols=53 Identities=30% Similarity=0.507 Sum_probs=44.8
Q ss_pred HHHHHHhhhHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhc
Q 005674 362 ISELVKQRDHLEAELKKVNLSL-AAAQARLRNAQEEREQFDEANDQIVEHLKTK 414 (684)
Q Consensus 362 I~~LekqrdeLEAeLKkVN~sL-~aA~aRl~n~rEERdQFdEA~nqiv~hLK~K 414 (684)
-..+++.++.++.+|..+..+| ..|+.-..++|-+|..+..-+.+.-..|+-+
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999 8999999999999999999887765555443
No 30
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.18 E-value=39 Score=33.66 Aligned_cols=95 Identities=21% Similarity=0.304 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCChhhhhhhhhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccc
Q 005674 270 IEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKAN 349 (684)
Q Consensus 270 ~ea~keal~qirlCSrlE~LlLkKksl~~GDS~e~haqkVDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv~K~n 349 (684)
...|.|-+-||-+.-.=-|+||-+=-=. ...-+++..-|.+| +..|=+.|.-
T Consensus 65 ~~~F~ELIRQVTi~C~ERGlLL~rvrde-------~~~~l~~y~~l~~s---------------------~~~f~~rk~l 116 (189)
T PF10211_consen 65 SQCFDELIRQVTIDCPERGLLLLRVRDE-------YRMTLDAYQTLYES---------------------SIAFGMRKAL 116 (189)
T ss_pred HHHHHHHHHHHHhCcHHHhHHHHHHHHH-------HHHHHHHHHHHHHH---------------------HHHHHHHHHH
Confidence 5589999999999555566666542211 11223344443333 3333333433
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 005674 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRN 392 (684)
Q Consensus 350 Evs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n 392 (684)
+....-.++..+|+.|++.+.+|+.++..+...+.+...+...
T Consensus 117 ~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 117 QAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335667777777777777777777777776666655544
No 31
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.88 E-value=64 Score=33.61 Aligned_cols=105 Identities=23% Similarity=0.342 Sum_probs=77.8
Q ss_pred hhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005674 328 KRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQI 407 (684)
Q Consensus 328 kRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqi 407 (684)
||+-++-++-=.-..|-..-+|=..+..|.--+=|..|.---.++.++-|+|||. .+.+++-|=.-.=+.++.|
T Consensus 72 KK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId------~IedlQDem~Dlmd~a~Ei 145 (218)
T KOG1655|consen 72 KKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNID------KIEDLQDEMEDLMDQADEI 145 (218)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH------HHHHHHHHHHHHHHHHHHH
Confidence 5566665555566788888888888999999999999999999999999999997 6777777765555666677
Q ss_pred HHHhh-------hchHHHHHHhhhhhcchhhHHHHHHh
Q 005674 408 VEHLK-------TKEDELLKSIAACRVESDVLSTWINF 438 (684)
Q Consensus 408 v~hLK-------~KEdELskSIasc~vEA~vv~tWInF 438 (684)
=+.|- .-|++|-..+..---|++...+-=++
T Consensus 146 QE~Lgr~y~~peide~dL~aELdaL~~E~d~~~~~~~~ 183 (218)
T KOG1655|consen 146 QEVLGRNYNTPDIDEADLDAELDALGQELDMLEEDENY 183 (218)
T ss_pred HHHHhhccCCCCcCHHHHHHHHHHHHhHhhcccccccc
Confidence 66664 35677777777766666655443333
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.30 E-value=2.4e+02 Score=33.71 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=50.7
Q ss_pred HHHHHHhhHHHHHHHHHhhhchHHHHHHhh---------hh-hcchhhHHHHHHhhch-hhhHHHhHHHHHHhhhhHHHH
Q 005674 394 QEEREQFDEANDQIVEHLKTKEDELLKSIA---------AC-RVESDVLSTWINFLED-SWVLQCSQMELKEKQVSEELV 462 (684)
Q Consensus 394 rEERdQFdEA~nqiv~hLK~KEdELskSIa---------sc-~vEA~vv~tWInFLEd-TW~LQss~~e~kekq~~dELe 462 (684)
|..|.|.+.=-.+.-.-||.|||.+..--. .+ ..|+.++-.|+..+-| +=.|-.+-. -|..+.-||=
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs--aEtriKldLf 621 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS--AETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHH
Confidence 334444544445555555555554432222 22 4578899999988877 434433333 2333332322
Q ss_pred hhHH---HHHHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 005674 463 KHED---YFVNLAISLLSAYKKELGPSISRIGKFVENL 497 (684)
Q Consensus 463 r~~d---~Fv~La~~~Ls~~keeL~psI~rI~~~V~nL 497 (684)
.|-. .=+.++-.+|...-.|+.-+=.+|-.++.=+
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2111 1134455556666666655555555554433
No 33
>PRK11281 hypothetical protein; Provisional
Probab=70.27 E-value=3e+02 Score=34.77 Aligned_cols=97 Identities=19% Similarity=0.287 Sum_probs=47.1
Q ss_pred hhhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhh---cccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Q 005674 308 KVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRV---VKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLA 384 (684)
Q Consensus 308 kVDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv---~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~ 384 (684)
+.++.+-=++.|......|.+++.+.+.+-+ +++-.. .+......-..+|...+..++.+..+.+++|...|+.|.
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le-~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELE-ALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444455555555555554444 333111 001112222244555556666666667777777777776
Q ss_pred HHHHHHHHHHHH----HHHhhHHHH
Q 005674 385 AAQARLRNAQEE----REQFDEAND 405 (684)
Q Consensus 385 aA~aRl~n~rEE----RdQFdEA~n 405 (684)
.++.|...++.. |.+-.|.++
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHH
Confidence 666655544433 444444444
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.13 E-value=1.4e+02 Score=31.75 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=33.7
Q ss_pred hhhHHHhhccCCChhHHHHHHHHHhhhccCchhHHHHHHHhHHHHHHHhhcchhhhccChHHHHHHH
Q 005674 151 EAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFA 217 (684)
Q Consensus 151 EgI~lSmIleaP~eEEvsLLlEiFglCL~GgkevH~aivssiqdLA~afs~y~DEVLvKReELLqfa 217 (684)
+..+..+....| +||++.-|. +-+-+.|.+-=..|.....|+..-.=.|.+--
T Consensus 57 ~~~~~A~~~~~P-------~Lely~~~c-------~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY 109 (325)
T PF08317_consen 57 EDYVVAGYCTVP-------MLELYQFSC-------RELKKYISEGRQIFEEIEEETYESNPPLFREY 109 (325)
T ss_pred HHHHHHhccCCh-------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 334445555666 456666221 34556666777788888888888777787443
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=70.02 E-value=2.4e+02 Score=33.53 Aligned_cols=10 Identities=10% Similarity=0.584 Sum_probs=6.5
Q ss_pred CCCCcchhhh
Q 005674 134 GGEPLNFRDV 143 (684)
Q Consensus 134 ggePmnFrdV 143 (684)
.|.|++..+|
T Consensus 113 n~~~~~~~~~ 122 (1164)
T TIGR02169 113 NGQRVRLSEI 122 (1164)
T ss_pred CCccccHHHH
Confidence 4677776665
No 36
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=68.41 E-value=43 Score=32.16 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH----HHHHHH-HHHHHHHHHhhHHHHHHHHHhhh
Q 005674 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLA----AAQARL-RNAQEEREQFDEANDQIVEHLKT 413 (684)
Q Consensus 353 ~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~----aA~aRl-~n~rEERdQFdEA~nqiv~hLK~ 413 (684)
.+.+++.+-|..++.+-.+|+-|+||+-.... .....+ .....||+.+.|.-+++.+.|+.
T Consensus 20 ~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~q 85 (131)
T PF11068_consen 20 ELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQ 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888899999999999999999888765 444444 66788999999999999998864
No 37
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.08 E-value=2.1e+02 Score=37.04 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhhhccCchh
Q 005674 165 EEISLLLEMFGLCLTGGKE 183 (684)
Q Consensus 165 EEvsLLlEiFglCL~Ggke 183 (684)
++.+-+-.||+-.++|+-.
T Consensus 192 ~dR~kF~kLf~taiy~~i~ 210 (1486)
T PRK04863 192 SDRSKFYRLIEASLYGGIS 210 (1486)
T ss_pred chHHHHHHHHHHHHHhhHH
Confidence 6677789999999988765
No 38
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.59 E-value=28 Score=37.06 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Q 005674 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLA 384 (684)
Q Consensus 351 vs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~ 384 (684)
+..-|+++..|+.+||+++++|.+||+++...+.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666554433
No 39
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=67.46 E-value=3.5e+02 Score=34.49 Aligned_cols=30 Identities=10% Similarity=0.298 Sum_probs=18.2
Q ss_pred HHHhhhhccccchhhhhhHHHHHHHHHHhhhh
Q 005674 217 AQTAITGLKMNSDIERIDAEASDLKKRLEGMK 248 (684)
Q Consensus 217 aQ~AIsGLK~nadi~riD~Ea~~L~~kl~~~~ 248 (684)
-+..|..| -+.|..+|+++..|...+....
T Consensus 747 l~~~IaeL--~~~i~~l~~~l~~l~~r~~~L~ 776 (1353)
T TIGR02680 747 LDARLAAV--DDELAELARELRALGARQRALA 776 (1353)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 3566777777777777766665
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=66.63 E-value=1.6e+02 Score=30.25 Aligned_cols=80 Identities=25% Similarity=0.317 Sum_probs=45.6
Q ss_pred HHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccchhhH----HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH
Q 005674 315 LSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSE----KEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARL 390 (684)
Q Consensus 315 LseSLanSssKAEkRI~d~R~QKEeAL~fRv~K~nEvs~----~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl 390 (684)
|+..|..--..=|..+..+|.+=+...+.++......+. .-..+-.|+..+.++.+.|.++|..+.....+-..++
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 444444433344555666665544444444443332222 2235567788888888888888777766666666666
Q ss_pred HHHH
Q 005674 391 RNAQ 394 (684)
Q Consensus 391 ~n~r 394 (684)
..++
T Consensus 247 ~~le 250 (312)
T PF00038_consen 247 RELE 250 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 41
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=65.39 E-value=3e+02 Score=32.92 Aligned_cols=268 Identities=24% Similarity=0.227 Sum_probs=137.5
Q ss_pred chhhhhhHHHHHHHHHHhh----hhhhccCCchhhhhhhh-hhhHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhccCCC
Q 005674 228 SDIERIDAEASDLKKRLEG----MKALQNSSNEDLEQASE-KTTKATIEALKEALAQ--IRVCTRLEGLLLKKKLLSYGD 300 (684)
Q Consensus 228 adi~riD~Ea~~L~~kl~~----~~~~~~~~~~~~~k~~~-~~~~a~~ea~keal~q--irlCSrlE~LlLkKksl~~GD 300 (684)
.|=.-+++.+..+..+++. ...+.....+.+.+-++ .+-..++..+++.+.+ .++|-..|..++-+..-- |
T Consensus 100 PDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~-~- 177 (629)
T KOG0963|consen 100 PDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKL-E- 177 (629)
T ss_pred CCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-
Confidence 3444445555555555544 11112222333333333 3444578899999988 899999973333222211 1
Q ss_pred ChhhhhhhhhhHHHHHHhhhcchHHHhhhHh-------hhhhhhHHhhhh----hhcccchhhHHHHHHH---HHHHHHH
Q 005674 301 SPEVHAQKVDKLKVLSESLSNSSVKAEKRIS-------DHRSQKEEALKV----RVVKANESSEKEKEIG---AEISELV 366 (684)
Q Consensus 301 S~e~haqkVDKLKvLseSLanSssKAEkRI~-------d~R~QKEeAL~f----Rv~K~nEvs~~EKEl~---aEI~~Le 366 (684)
.=.+.+.-.|+---..++.-...+|+.|. ++..|-.+.-.. =..|..||+-+-.+|. .=|-.||
T Consensus 178 --q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE 255 (629)
T KOG0963|consen 178 --QEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLE 255 (629)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112222233223333333444444444 344333333322 2357778888777775 3578899
Q ss_pred HhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHH---HHHhhhhhcchhhHHHHHHhhchhh
Q 005674 367 KQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDEL---LKSIAACRVESDVLSTWINFLEDSW 443 (684)
Q Consensus 367 kqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdEL---skSIasc~vEA~vv~tWInFLEdTW 443 (684)
.....|.-||+++|.+...+.+-.-++. ++ -|-.|+++. +..|- +++++.+. +.-+|
T Consensus 256 ~e~e~L~~ql~~~N~~~~~~~~~~i~~~----------~~---~L~~kd~~i~~L~~di~--~~~~S~~~-----e~e~~ 315 (629)
T KOG0963|consen 256 REVEQLREQLAKANSSKKLAKIDDIDAL----------GS---VLNQKDSEIAQLSNDIE--RLEASLVE-----EREKH 315 (629)
T ss_pred HHHHHHHHHHHhhhhhhhhccCCchHHH----------HH---HHhHHHHHHHHHHHHHH--HHHHHHHH-----HHHHH
Confidence 9999999999999999877733222221 22 222255443 33332 33444333 45577
Q ss_pred hHHHhHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhcccCC-CccCCCCCCccccccCccc
Q 005674 444 VLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEG-SENASSGDDEHSKELNPRK 522 (684)
Q Consensus 444 ~LQss~~e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk~l~~~-~e~~~~~d~e~Sk~~npRk 522 (684)
..|-+--|.+=+....+|+....- |-.| --.+.|++=+-=|+.+-=+ ++-+.+.| +. -+
T Consensus 316 ~~qI~~le~~l~~~~~~leel~~k--------L~~~-----sDYeeIK~ELsiLk~ief~~se~a~~~~-~~------~~ 375 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEELKEK--------LNSR-----SDYEEIKKELSILKAIEFGDSEEANDED-ET------AK 375 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------Hhhh-----ccHHHHHHHHHHHHHhhcCCcccccccc-cc------cc
Confidence 777666655555555555544321 1111 1123455555556654433 32222222 11 16
Q ss_pred chHHHHHhHhHHHHHHH
Q 005674 523 NLEEEYLDYEAKIITTF 539 (684)
Q Consensus 523 ~LEeeYLe~E~Kii~~f 539 (684)
.||---|+.+++.=+..
T Consensus 376 ~leslLl~knr~lq~e~ 392 (629)
T KOG0963|consen 376 TLESLLLEKNRKLQNEN 392 (629)
T ss_pred hHHHHHHHHHhhhhHHH
Confidence 78888888888876554
No 42
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.11 E-value=3.8e+02 Score=33.75 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 005674 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVN----LSLAAAQARLRNAQEEREQFDEANDQIVEHLK 412 (684)
Q Consensus 349 nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN----~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK 412 (684)
++...-.+++-.+|..|...++.+++++..+. ..+..++..+...+..-+||...+.+|-..+.
T Consensus 898 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~ 965 (1311)
T TIGR00606 898 QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965 (1311)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555555555554432 33445556666666777788888888865433
No 43
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=63.78 E-value=34 Score=28.57 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHhhHHHHH
Q 005674 357 EIGAEISELVKQRDHLEAELKKVNLSLAA----AQARLRNAQEEREQFDEANDQ 406 (684)
Q Consensus 357 El~aEI~~LekqrdeLEAeLKkVN~sL~a----A~aRl~n~rEERdQFdEA~nq 406 (684)
++.+||.-|+|+.+.++.++.+++..|+. +.|--.-...+|+.+.+...+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~ 54 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEE 54 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999998888763 233333344455555444443
No 44
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=63.26 E-value=1.5e+02 Score=28.87 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhc
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRN------------AQEEREQFDEANDQIVEHLKTKEDELLKSIAACRV 427 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n------------~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~v 427 (684)
.+++.|..+.+.|..++.+++..|+.-..+++. .|++-..-+--..++=..+.+.-..|-..|.+-|.
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666554444433 33333333333333333344444556666665444
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.80 E-value=60 Score=33.09 Aligned_cols=75 Identities=13% Similarity=0.287 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHH
Q 005674 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTW 435 (684)
Q Consensus 356 KEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tW 435 (684)
..+..-+..|++|..+|.++|...+.++++-.+.+.+.-. .+++.+..|+.+-++|.+.+..-+.|.+.+.+=
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~-------~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVA-------QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777777777777777777666644444433322 255666778888888888888766666555544
Q ss_pred HH
Q 005674 436 IN 437 (684)
Q Consensus 436 In 437 (684)
+.
T Consensus 162 ~~ 163 (206)
T PRK10884 162 LD 163 (206)
T ss_pred HH
Confidence 33
No 46
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.26 E-value=97 Score=29.78 Aligned_cols=85 Identities=22% Similarity=0.362 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------hhchHHHHHHhhhhhcc
Q 005674 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHL-------KTKEDELLKSIAACRVE 428 (684)
Q Consensus 356 KEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hL-------K~KEdELskSIasc~vE 428 (684)
..+-.||..|.++...||.+|-+++..|..+...+.....-.-+.+-.+. =|.-| ..+-.+...-+..-.+-
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~r-riq~LEeele~ae~~L~e~~ekl~e~d~~ 109 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNR-RIQLLEEELEEAEKKLKETTEKLREADVK 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998888777554444442111 11111 11222223334444566
Q ss_pred hhhHHHHHHhhch
Q 005674 429 SDVLSTWINFLED 441 (684)
Q Consensus 429 A~vv~tWInFLEd 441 (684)
|+-+-.++.+|+.
T Consensus 110 ae~~eRkv~~le~ 122 (143)
T PF12718_consen 110 AEHFERKVKALEQ 122 (143)
T ss_pred hHHHHHHHHHHHh
Confidence 7777777777775
No 47
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.25 E-value=2.4e+02 Score=30.47 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=24.5
Q ss_pred HHHHHhhhccCchhHHHHHHHhHHHHHHHhhcchhhhccChHHHHH
Q 005674 170 LLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQ 215 (684)
Q Consensus 170 LlEiFglCL~GgkevH~aivssiqdLA~afs~y~DEVLvKReELLq 215 (684)
+||++--|. +|+..-|-.+ =..|..+..|+.+--=.|.+
T Consensus 64 ~LElY~~sC---~EL~~~I~eg----r~~~~~~E~et~~~nPpLF~ 102 (312)
T smart00787 64 LLELYQFSC---KELKKYISEG----RDLFKEIEEETLINNPPLFK 102 (312)
T ss_pred HHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHhhcCcHHHH
Confidence 577777442 5666665554 34788888888765444543
No 48
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=60.75 E-value=54 Score=35.25 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=55.8
Q ss_pred HHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhchhhhHHHhHH
Q 005674 372 LEAELK-KVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQM 450 (684)
Q Consensus 372 LEAeLK-kVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLEdTW~LQss~~ 450 (684)
+-+.|. .+|..+..|+.-+++.+.-|=+||-|-..+=. | -.
T Consensus 179 Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~---------------~-----------------------~~ 220 (289)
T PF10455_consen 179 FNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKN---------------K-----------------------AK 220 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------c-----------------------CC
Confidence 344453 47788888888888888888888877654221 1 11
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchh
Q 005674 451 ELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPS 486 (684)
Q Consensus 451 e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~ps 486 (684)
..|+.+...+||.++|.||.-+-.-+...++.|.++
T Consensus 221 pekee~~r~~lE~aEDeFv~aTeeAv~~Mk~vl~~~ 256 (289)
T PF10455_consen 221 PEKEEQLRVELEQAEDEFVSATEEAVEVMKEVLDNS 256 (289)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 223447778899999999999999888888888874
No 49
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=60.60 E-value=2e+02 Score=36.94 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=37.6
Q ss_pred hhhhhhhHHHhhccCC-ChhHHHHHHHHHhhhccCchhH---------HHHHHHhHHHHHHHhhcchhhhccChHHHH--
Q 005674 147 SQALEAITVSMILEAP-NEEEISLLLEMFGLCLTGGKEV---------HHAITSSIQDLATAISKYQDEVLVKREELL-- 214 (684)
Q Consensus 147 SqALEgI~lSmIleaP-~eEEvsLLlEiFglCL~Ggkev---------H~aivssiqdLA~afs~y~DEVLvKReELL-- 214 (684)
+++|-.-||.| |-| ++++|.-|-+-.-=-+.-=+.| .-++...+|.-|..-+++-+-|..+-|+..
T Consensus 1494 i~~vA~~vL~l--~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~ea 1571 (1758)
T KOG0994|consen 1494 IEEVAEEVLAL--ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEA 1571 (1758)
T ss_pred HHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44444444443 555 6666665543222111111222 224455566666666777666666655442
Q ss_pred --------HHHHHhhhh
Q 005674 215 --------QFAQTAITG 223 (684)
Q Consensus 215 --------qfaQ~AIsG 223 (684)
..||+||.|
T Consensus 1572 L~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1572 LEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 236666666
No 50
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.25 E-value=3.9e+02 Score=32.57 Aligned_cols=213 Identities=24% Similarity=0.289 Sum_probs=131.4
Q ss_pred HHHHhhhhccccchhhhhhHHHHHHHHHHhhhhhhccCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005674 216 FAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKL 295 (684)
Q Consensus 216 faQ~AIsGLK~nadi~riD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~a~~ea~keal~qirlCSrlE~LlLkKks 295 (684)
.|+.||+|.- +-++|+..||+.|+.-..... .-.+..+| +=.|||+.|-|+|.-.-
T Consensus 11 vaeeav~gwe------kae~e~~~lk~~l~~~~~~~~---~~e~r~~h-----ld~aLkec~~qlr~~re---------- 66 (769)
T PF05911_consen 11 VAEEAVSGWE------KAEAEAASLKQQLEAATQQKL---ALEDRVSH-----LDGALKECMRQLRQVRE---------- 66 (769)
T ss_pred HHHHHHhhHH------HHHHHHHHHHHHHHHHHHHhH---HHHHHhhh-----hhHHHHHHHHHHHHhhH----------
Confidence 4899999984 568999999999997653221 11222222 45699999999886431
Q ss_pred ccCCCChhhhhhhhhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHH
Q 005674 296 LSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAE 375 (684)
Q Consensus 296 l~~GDS~e~haqkVDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAe 375 (684)
.-|+||-|.- +.|+.|....-.||-+.|.++.++...+.|+
T Consensus 67 -----------------------------e~eq~i~~~~----------~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e 107 (769)
T PF05911_consen 67 -----------------------------EQEQKIHEAV----------AKKSKEWEKIKSELEAKLAELSKRLAESAAE 107 (769)
T ss_pred -----------------------------HHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2245554432 2345555555567888888888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhchhhhHHHhHHHHHHh
Q 005674 376 LKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEK 455 (684)
Q Consensus 376 LKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLEdTW~LQss~~e~kek 455 (684)
-..+..+|..=-.-+..+++++.+-+ .-+..|+.+-+-+-|.+++-+.|.-|+..=+.+----+-+=.-..+.--|
T Consensus 108 ~~~l~~~l~~~~~~i~~l~~~~~~~e----~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~k 183 (769)
T PF05911_consen 108 NSALSKALQEKEKLIAELSEEKSQAE----AEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASK 183 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88888888766666777777776644 34567788888888999999999988887755544333322222222333
Q ss_pred hhhHHHHhhHHHHHHHHHHHHH--HHHHhhchh-hHHHHHHHHhh
Q 005674 456 QVSEELVKHEDYFVNLAISLLS--AYKKELGPS-ISRIGKFVENL 497 (684)
Q Consensus 456 q~~dELer~~d~Fv~La~~~Ls--~~keeL~ps-I~rI~~~V~nL 497 (684)
|--+-.-+.+- +--=|+-|. ..|+-=+|. |-+++.=|+.|
T Consensus 184 qhle~vkkiak--LEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 184 QHLESVKKIAK--LEAECQRLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence 32211111000 000122222 234445553 67788888887
No 51
>PF13166 AAA_13: AAA domain
Probab=60.06 E-value=3.1e+02 Score=31.38 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=23.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 005674 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHL 411 (684)
Q Consensus 361 EI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hL 411 (684)
+|..+++....+..++++.+..++..++.+.++. .|-+--|..+..|
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~----~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTE----PAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHh
Confidence 4444445555555555555555555555555544 3444445555554
No 52
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=57.36 E-value=6.2e+02 Score=33.94 Aligned_cols=223 Identities=24% Similarity=0.304 Sum_probs=106.3
Q ss_pred HHHhHHHHHHHhhcchhhhccChHHHHHHHHHhhhhccccchhhhhhHHHHHHHHHHhhhhhhccCCchhhhhhhhhhhH
Q 005674 188 ITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTK 267 (684)
Q Consensus 188 ivssiqdLA~afs~y~DEVLvKReELLqfaQ~AIsGLK~nadi~riD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~ 267 (684)
+-+.+.||-..|+.|+.| +| +-+...|- ++..+=-++..++..+...+-.+. =+.+....
T Consensus 634 ~e~~l~qLe~~le~~~~E---~~-~~~~~l~e---------~~~~l~~ev~~ir~~l~k~~~~~~-------fA~ekle~ 693 (1822)
T KOG4674|consen 634 KEKRLRQLENELESYKKE---KR-ENLKKLQE---------DFDSLQKEVTAIRSQLEKLKNELN-------LAKEKLEN 693 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH---HH-HHHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHH
Confidence 678899999999999987 33 22333333 333444566666666666552211 12222211
Q ss_pred --HHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCCCChhhhhhhhhhHHHHHHhhhcchHHHhhhHhhh---hhhh-HHh
Q 005674 268 --ATIEALKEALAQIR-VCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDH---RSQK-EEA 340 (684)
Q Consensus 268 --a~~ea~keal~qir-lCSrlE~LlLkKksl~~GDS~e~haqkVDKLKvLseSLanSssKAEkRI~d~---R~QK-EeA 340 (684)
-+++.+|.-+..++ --..|...+.+.+...+-=|-++|+-. -|+++|.--+ +..|.|++++-+ |.+- -+.
T Consensus 694 L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~-~k~~~le~ev--~~LKqE~~ll~~t~~rL~~e~~~ 770 (1822)
T KOG4674|consen 694 LEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSAN-EKLEKLEAEL--SNLKQEKLLLKETEERLSQELEK 770 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 25777777766544 122235555555544333333333321 1222222111 223444444322 1111 112
Q ss_pred hhhhhcccc-------hh-hHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 005674 341 LKVRVVKAN-------ES-SEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLK 412 (684)
Q Consensus 341 L~fRv~K~n-------Ev-s~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK 412 (684)
|.-+....+ -. ...|....+ -|+.++.+++.+...|..+.-.+..-.++.-.|-.-+++-+.-.+
T Consensus 771 l~~e~~~L~~~l~~lQt~~~~~e~s~~~-------~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~ 843 (1822)
T KOG4674|consen 771 LSAEQESLQLLLDNLQTQKNELEESEMA-------TKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQ 843 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 211111111 00 111112222 233344444555555555555555555555555555666666666
Q ss_pred hchHHHHHHhhhhhcchhhHHHHHHhhc
Q 005674 413 TKEDELLKSIAACRVESDVLSTWINFLE 440 (684)
Q Consensus 413 ~KEdELskSIasc~vEA~vv~tWInFLE 440 (684)
.+.|++-.-+.+-.-+-+.+.+=|.-|+
T Consensus 844 ~~i~~~~~~~~~~~~~l~~~~~~~~~le 871 (1822)
T KOG4674|consen 844 NLVDELESELKSLLTSLDSVSTNIAKLE 871 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766666666666666655443
No 53
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.79 E-value=79 Score=33.79 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 005674 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA 393 (684)
Q Consensus 353 ~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~ 393 (684)
.-.+++..|+..|+++..+|.++|+++...-......+...
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555544444433333333333
No 54
>PRK03918 chromosome segregation protein; Provisional
Probab=56.33 E-value=3.9e+02 Score=31.35 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Q 005674 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEA 403 (684)
Q Consensus 356 KEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA 403 (684)
+++-.+++.+.++..+++++++.+...+..+...+...++.+..+++.
T Consensus 196 ~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l 243 (880)
T PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL 243 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666666555554
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.07 E-value=59 Score=31.13 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=14.2
Q ss_pred HHHHHhhhhhcchhhHHHHHHhhchhhhH
Q 005674 417 ELLKSIAACRVESDVLSTWINFLEDSWVL 445 (684)
Q Consensus 417 ELskSIasc~vEA~vv~tWInFLEdTW~L 445 (684)
||...|.....|-..+..=+..|.+.|..
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444444444444455555555555544
No 56
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=55.99 E-value=6.6e+02 Score=33.87 Aligned_cols=73 Identities=29% Similarity=0.387 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhh
Q 005674 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIA 423 (684)
Q Consensus 351 vs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIa 423 (684)
..+-.+.+...|..+..++.+|..+|++....|.+...|+.+-..+..||-.-..+.-.+++--.++|....+
T Consensus 1046 le~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1046 LEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333477888899999999999999999999999999999999999999999888888888777777765544
No 57
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.63 E-value=59 Score=30.78 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhh
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAAC 425 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc 425 (684)
..+.+|-+|||+|++.+..++.+.++..- =+.-|+++.+|+-+.+.+-
T Consensus 30 ~S~~eL~kqkd~L~~~l~~L~~q~~s~~q------------------r~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 30 TSQGELAKQKDQLRNALQSLQAQNASRNQ------------------RIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Confidence 45777788888877777666665444433 3455666666666665543
No 58
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.63 E-value=2.3e+02 Score=28.41 Aligned_cols=88 Identities=31% Similarity=0.333 Sum_probs=49.3
Q ss_pred hHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH
Q 005674 311 KLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARL 390 (684)
Q Consensus 311 KLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl 390 (684)
+++--.+.|-......+.+|.+....=+++..-| +.+.--.++.+++..|+++..+|.++|++....- -.++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-----~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D---p~~i 137 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-----EESEEREELLEELEELKKELKELKKELEKYSEND---PEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHH
Confidence 3333334466666667777777766666653333 2223444577888888888888888887443321 1244
Q ss_pred HHHHHHHHHhhHHHHH
Q 005674 391 RNAQEEREQFDEANDQ 406 (684)
Q Consensus 391 ~n~rEERdQFdEA~nq 406 (684)
...+++-...-+|.|.
T Consensus 138 ~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 138 EKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 59
>PF13514 AAA_27: AAA domain
Probab=55.38 E-value=4.9e+02 Score=32.19 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=72.9
Q ss_pred HHhhhchHHHHHHhhhhhcchhhHHHHHHhhchhhhHHHhHHHHHHhhhhHHHHhhHHHH--HHHH----HHHHHHHHHh
Q 005674 409 EHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYF--VNLA----ISLLSAYKKE 482 (684)
Q Consensus 409 ~hLK~KEdELskSIasc~vEA~vv~tWInFLEdTW~LQss~~e~kekq~~dELer~~d~F--v~La----~~~Ls~~kee 482 (684)
..|+.+-++|...+..|..+-..++.=|.-|++.-.+-.. ...-.....+|.+....+ +.++ ...+..|+++
T Consensus 899 ~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l--~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~ 976 (1111)
T PF13514_consen 899 EELEEELEELEEELEELQEERAELEQELEALEGDDDAAEL--EQEREEAEAELEELAEEWAALRLAAELLEEAIERYREE 976 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555556666653222111 112223344444444333 2333 3445557765
Q ss_pred -hchhhHHHHHHHHhhhcccCCCccCCCCCCcc----ccc---cCcccc--------hHHHHHhHhHHHHHHHHhhhhhH
Q 005674 483 -LGPSISRIGKFVENLKNLSEGSENASSGDDEH----SKE---LNPRKN--------LEEEYLDYEAKIITTFSVVDNMK 546 (684)
Q Consensus 483 -L~psI~rI~~~V~nLk~l~~~~e~~~~~d~e~----Sk~---~npRk~--------LEeeYLe~E~Kii~~fSivD~mk 546 (684)
..|.+.+...|...|-. |.-..-..|.+. -.+ .+-+.. -++=|| -..|++++.+-
T Consensus 977 ~~p~vl~~As~~f~~LT~---G~Y~~l~~d~d~~~~~l~~~~~~G~~~~~~~LS~GT~dQLYL------ALRLA~~e~~~ 1047 (1111)
T PF13514_consen 977 RQPPVLARASEYFSRLTG---GRYSRLRVDEDGDKPVLVVVRADGERVPVEELSRGTRDQLYL------ALRLALAELLA 1047 (1111)
T ss_pred hhHHHHHHHHHHHHHHhC---CCCceeeeccccCcccceEEecCCeEeeHHHhCHHHHHHHHH------HHHHHHHHHHH
Confidence 56777888877776633 321111111111 111 111221 233344 23556665551
Q ss_pred HH---H-HhhhcCCCCCCchHHHHHHHHHHHHH
Q 005674 547 EQ---F-YAQRGANSRKDDPRVKELFDDIEKLR 575 (684)
Q Consensus 547 ~~---f-y~~q~~~sRkdd~~vkeLf~~IeKlR 575 (684)
.. + ++--...-.-||.+.+..+..+.+|-
T Consensus 1048 ~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls 1080 (1111)
T PF13514_consen 1048 EQGEPLPFILDDIFVNFDDERARAALELLAELS 1080 (1111)
T ss_pred hCCCCCcEEeeCCccccCHHHHHHHHHHHHHhc
Confidence 11 1 22244455678888888888877764
No 60
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=54.73 E-value=4.1e+02 Score=32.33 Aligned_cols=104 Identities=14% Similarity=0.278 Sum_probs=67.2
Q ss_pred HHHHHHHHhhchhhHHHHHHHHhhhcccCCCccCCCCCCccccccCcccchHHHHHhHhHHHHHHHHhhhhhHHHHHhhh
Q 005674 474 SLLSAYKKELGPSISRIGKFVENLKNLSEGSENASSGDDEHSKELNPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQR 553 (684)
Q Consensus 474 ~~Ls~~keeL~psI~rI~~~V~nLk~l~~~~e~~~~~d~e~Sk~~npRk~LEeeYLe~E~Kii~~fSivD~mk~~fy~~q 553 (684)
++--.|+++|..+=.++..+.+.|+++-.+-... +.+--....-+.-|.+.+=.+=..+-+--++|+++|+ |-.++
T Consensus 155 ~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e---~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~-YvGeq 230 (739)
T PF07111_consen 155 SLTQAHQEALASLTSKAEELEKSLESLETRRAGE---AKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRK-YVGEQ 230 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHhhh
Confidence 4445678888888899999999888876542111 1111112223345666666666667777789999999 55455
Q ss_pred cCCCCC---CchHHHHHHHHHHHHHHHhccc
Q 005674 554 GANSRK---DDPRVKELFDDIEKLRLEFESI 581 (684)
Q Consensus 554 ~~~sRk---dd~~vkeLf~~IeKlR~efEsI 581 (684)
.....+ -.++=.+|.+.+.+|+++=.++
T Consensus 231 ~p~~~~~~~we~Er~~L~~tVq~L~edR~~L 261 (739)
T PF07111_consen 231 VPPEVHSQAWEPEREELLETVQHLQEDRDAL 261 (739)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432222 2466688999999998765544
No 61
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.17 E-value=1e+02 Score=36.82 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhch
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKE 415 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KE 415 (684)
.=|..|+.+|.++|.+..++...+..+.......++++++|++.-..++..++.+-
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a 575 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA 575 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444455555555555555555555554444433
No 62
>smart00338 BRLZ basic region leucin zipper.
Probab=52.97 E-value=40 Score=27.68 Aligned_cols=44 Identities=34% Similarity=0.416 Sum_probs=29.1
Q ss_pred hHHhhhhhhcccchhhHHHHH---HHHHHHHHHHhhhHHHHHHHHHh
Q 005674 337 KEEALKVRVVKANESSEKEKE---IGAEISELVKQRDHLEAELKKVN 380 (684)
Q Consensus 337 KEeAL~fRv~K~nEvs~~EKE---l~aEI~~LekqrdeLEAeLKkVN 380 (684)
++=|..+|..|-..+.++|.+ |..|...|..+.+.|+.++..+.
T Consensus 14 R~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 14 REAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999988888764 34455555555555555554443
No 63
>PF15444 TMEM247: Transmembrane protein 247
Probab=52.18 E-value=30 Score=35.59 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=38.4
Q ss_pred cccCCCcccccCCCCCCCCC--------CCCCCCCCCCCCCCCCccccCCCCCccCCCCCCCCC--CCCCChHHHHhhhh
Q 005674 579 ESIERPNLELENPSPKTGTS--------SSEMSPKSPSSPPPTQRTTTQKPDISEHREKPVHKG--EQALDPEAELAKLE 648 (684)
Q Consensus 579 EsIeRP~LeiE~~~~~~~~~--------~~~~~~~s~~~~~~~~~~~t~~~~~~~~p~~~~~~~--~~~~d~~~eLakl~ 648 (684)
|+-+|..|+.|+|+|.|+-. ..-.-++.|.+.+|-.+++ .|-...|.|+.....+ ...-.++-||+|+-
T Consensus 32 egkpra~leaes~kpdSSyd~LEe~etced~gcpGppksLs~K~gp~-tkGqAGDgPe~~elp~~~~~e~~~emELEKvR 110 (218)
T PF15444_consen 32 EGKPRASLEAESPKPDSSYDYLEEMETCEDGGCPGPPKSLSPKAGPT-TKGQAGDGPEPAELPPTPGTEHNTEMELEKVR 110 (218)
T ss_pred CCCcccccccCCCCCcchhhHHHhccccccCCCCCCCCCCCccCCCC-CCCCCCCCCChhhcCCCCCcCcchhhHHHHHH
Confidence 56789999999998854410 0002223333333333333 3334444666533322 22334556888887
Q ss_pred hhccc
Q 005674 649 SEFGK 653 (684)
Q Consensus 649 ~E~gk 653 (684)
-||--
T Consensus 111 MEFEL 115 (218)
T PF15444_consen 111 MEFEL 115 (218)
T ss_pred HHHHH
Confidence 77643
No 64
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=51.32 E-value=31 Score=30.35 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRN 392 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n 392 (684)
...++..|+.+.+.|++++..++..++++.+++.-
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34588888889999999999999998888888753
No 65
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.30 E-value=2.1e+02 Score=26.61 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=57.9
Q ss_pred hhhhhhhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcc----------c------------c------------
Q 005674 304 VHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVK----------A------------N------------ 349 (684)
Q Consensus 304 ~haqkVDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv~K----------~------------n------------ 349 (684)
-..+...+|+-.-+.|..+....+..|.+++.=+ ++|++=-.+ + +
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~-e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~v 88 (140)
T PRK03947 10 ELAAQLQALQAQIEALQQQLEELQASINELDTAK-ETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSA 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEE
Confidence 3445667778888888888888888999887776 344332111 1 1
Q ss_pred --hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005674 350 --ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQE 395 (684)
Q Consensus 350 --Evs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rE 395 (684)
.+.+..+.|-.-|..|+++.+.|+.+|.+++..++.-...+..+..
T Consensus 89 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 89 EKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666665555443
No 66
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.21 E-value=93 Score=37.17 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHh
Q 005674 354 KEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422 (684)
Q Consensus 354 ~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSI 422 (684)
...++..-|..|+.++.++|.+...+...+..+.......++++++|.+.-..++..++.+-.++.+..
T Consensus 509 ~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a 577 (771)
T TIGR01069 509 FKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL 577 (771)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677788888888888888888888888888888888888888888888877776655554443
No 67
>PRK14127 cell division protein GpsB; Provisional
Probab=51.10 E-value=20 Score=33.58 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=53.7
Q ss_pred hHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005674 337 KEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEER 397 (684)
Q Consensus 337 KEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEER 397 (684)
|+=.-.||+=...||.+-.-+|..++..|.++..+|..++..++..|...+.|+...++.-
T Consensus 14 KeF~~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~ 74 (109)
T PRK14127 14 KEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSS 74 (109)
T ss_pred CccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3333468999999999999999999999999999999999999999999999998776553
No 68
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=50.05 E-value=1.4e+02 Score=32.74 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=10.7
Q ss_pred CCcchhhhhhhhhhhhhhHHHhhccC
Q 005674 136 EPLNFRDVFLQSQALEAITVSMILEA 161 (684)
Q Consensus 136 ePmnFrdVFL~SqALEgI~lSmIlea 161 (684)
-|=.|--+|+|. +=+.++++++||
T Consensus 15 ~~~~~~~~~~~~--~~~~~~~~~~WA 38 (457)
T TIGR01000 15 RYHNFSTLVIVP--IFLLLVFLVLFS 38 (457)
T ss_pred cCCCcchhHHHH--HHHHHHHHHHHH
Confidence 344455555553 223444444443
No 69
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=49.79 E-value=1.5e+02 Score=26.25 Aligned_cols=88 Identities=14% Similarity=0.218 Sum_probs=60.9
Q ss_pred HHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH---HH
Q 005674 316 SESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARL---RN 392 (684)
Q Consensus 316 seSLanSssKAEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl---~n 392 (684)
.+-+.+|..+++..+...+.....+- +..|....-+||...|..++.+.++|+.-..-|... ..|. ..
T Consensus 7 ~~ev~~sl~~l~~~~~~~~~~~~~~~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n----p~kF~l~~~ 77 (97)
T PF09177_consen 7 KDEVQSSLDRLESLYRRWQRLRSDTS-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN----PSKFNLSEE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHT-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccccCCCHH
Confidence 34456677777777777765554443 666888899999999999999999999877665444 2232 23
Q ss_pred HHHHHHHhhHHHHHHHHHhh
Q 005674 393 AQEEREQFDEANDQIVEHLK 412 (684)
Q Consensus 393 ~rEERdQFdEA~nqiv~hLK 412 (684)
.-..|.+|=.+..+-|.++|
T Consensus 78 Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 78 EISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 33567888888777776654
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.02 E-value=4.5e+02 Score=32.75 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhc
Q 005674 368 QRDHLEAELKKVNLSLAAA---QARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLE 440 (684)
Q Consensus 368 qrdeLEAeLKkVN~sL~aA---~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLE 440 (684)
.|.+|.++||.+...+.-- ..-|+.++..|+ -|..|||.+-|+|+|.+.|-.-|-+++++=+.=|.
T Consensus 508 Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke-------~irq~ikdqldelskE~esk~~eidi~n~qlkelk 576 (1118)
T KOG1029|consen 508 EKQELNHQLKQKQSAHKETTQRKSELEAARRKKE-------LIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK 576 (1118)
T ss_pred HHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3556666666665544322 334555555554 58899999999999999999999999888765553
No 71
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.36 E-value=3e+02 Score=32.96 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=50.0
Q ss_pred hhhcchHHHhhhHhhhhhhhHHhhhhhhcc--------cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHH
Q 005674 318 SLSNSSVKAEKRISDHRSQKEEALKVRVVK--------ANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQAR 389 (684)
Q Consensus 318 SLanSssKAEkRI~d~R~QKEeAL~fRv~K--------~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aR 389 (684)
+|...+.+...||.+-+ +|-+.|.-|+.+ .-..|..||+...|+..+..+.+.|-+.+++++..++..+..
T Consensus 590 ~l~~~ae~LaeR~e~a~-d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~ 668 (717)
T PF10168_consen 590 SLRESAEKLAERYEEAK-DKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQ 668 (717)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444654432 344455555442 345899999999999999999999999999999988875544
Q ss_pred HH
Q 005674 390 LR 391 (684)
Q Consensus 390 l~ 391 (684)
+.
T Consensus 669 i~ 670 (717)
T PF10168_consen 669 IE 670 (717)
T ss_pred Hh
Confidence 43
No 72
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.17 E-value=2.3e+02 Score=26.56 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005674 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE 396 (684)
Q Consensus 351 vs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEE 396 (684)
.+..-+.+..+|..|......|+.++......++.+..+...++..
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888888888888888777777777777665543
No 73
>PRK14143 heat shock protein GrpE; Provisional
Probab=45.79 E-value=1.4e+02 Score=31.27 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=49.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHhhhchHHHHHHhh
Q 005674 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ-----EEREQFDEANDQIVEHLKTKEDELLKSIA 423 (684)
Q Consensus 349 nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~r-----EERdQFdEA~nqiv~hLK~KEdELskSIa 423 (684)
.+.+....+...++..|+.+.+.|+++++..+..+..++|-+.|.| |--+..+-|...++..|=-=-|.|-+.+.
T Consensus 56 ~~~~~~~~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~ 135 (238)
T PRK14143 56 SAASETAADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQ 135 (238)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3344444455566667777777777777777777777766666554 33344556666666666666677777766
Q ss_pred hhhc
Q 005674 424 ACRV 427 (684)
Q Consensus 424 sc~v 427 (684)
+++-
T Consensus 136 ~~~~ 139 (238)
T PRK14143 136 QLKP 139 (238)
T ss_pred cccc
Confidence 5543
No 74
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=45.49 E-value=7.1e+02 Score=31.19 Aligned_cols=93 Identities=30% Similarity=0.213 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhh---HH
Q 005674 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDV---LS 433 (684)
Q Consensus 357 El~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~v---v~ 433 (684)
+|.+|++.|+..++.|-.||.++|. +++ .| .|+|-|=.-.--.-+.-||.+-.+-.+-|....++.++ ++
T Consensus 513 ~le~e~~~le~E~~~l~~el~~~~~-~~~---kl---~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~ 585 (913)
T KOG0244|consen 513 TLEAEKSPLESERSRLRNELNVFNR-LAA---KL---GEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLL 585 (913)
T ss_pred hHHHHhcccccccHHHHHHHHhhhH-HHH---Hh---hhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHH
Confidence 5667899999999999999999999 322 23 34444444444556777888888888888887777766 45
Q ss_pred HHHHhhch-hhhHHHhHHHHHHhh
Q 005674 434 TWINFLED-SWVLQCSQMELKEKQ 456 (684)
Q Consensus 434 tWInFLEd-TW~LQss~~e~kekq 456 (684)
+||--++. +=.|++...+-.++.
T Consensus 586 ~ei~~~k~~kv~l~~~~~~d~ekf 609 (913)
T KOG0244|consen 586 QEIHIAKGQKVQLLRVMKEDAEKF 609 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 78877777 666777776666553
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.87 E-value=2.4e+02 Score=33.14 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=14.5
Q ss_pred HHHHHHHhhchhhHHHHHHH
Q 005674 475 LLSAYKKELGPSISRIGKFV 494 (684)
Q Consensus 475 ~Ls~~keeL~psI~rI~~~V 494 (684)
.=.+|+-+|..+|..|+-=-
T Consensus 239 ~r~~F~~eL~~Ai~eiRaqy 258 (546)
T KOG0977|consen 239 NREYFKNELALAIREIRAQY 258 (546)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34578888888888887533
No 76
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.79 E-value=1.2e+02 Score=30.84 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 005674 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLK 412 (684)
Q Consensus 359 ~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK 412 (684)
..||..|+.+.+.|++++...+..++.-..++.+...-|.+-.----+++..|+
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444443
No 77
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=44.59 E-value=3.2e+02 Score=26.97 Aligned_cols=79 Identities=25% Similarity=0.333 Sum_probs=49.9
Q ss_pred chHHHhhhHhhhhhhhHHhhhh-hhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 005674 322 SSVKAEKRISDHRSQKEEALKV-RVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQF 400 (684)
Q Consensus 322 SssKAEkRI~d~R~QKEeAL~f-Rv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQF 400 (684)
-...+++.|.+...|=+.||.- |-.-+-+.-.--+++...+..|+.+.+.+..+..++..+|.....++..++.+|+.+
T Consensus 59 ~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 59 KLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555542 111222233333566677777888888888888888888888888888888777654
No 78
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.45 E-value=1.3e+02 Score=36.00 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHhhhchHHHHHHhhh
Q 005674 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEERE----QFDEANDQIVEHLKTKEDELLKSIAA 424 (684)
Q Consensus 350 Evs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERd----QFdEA~nqiv~hLK~KEdELskSIas 424 (684)
+++.+-..|.++...++..+++++..++++....+....++...+++|+ +..+--++++...+.+-+++-+.+..
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555444443 33444567888888877777777653
No 79
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=44.37 E-value=67 Score=30.43 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcc
Q 005674 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVE 428 (684)
Q Consensus 361 EI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vE 428 (684)
|-..|+.++.+++.+|..++.+|.....-....--+||+...++++ |+++-+.+.+-|+.-..+
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~----L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQS----LQAQNASRNQRIAELQAK 66 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999988877777778888886655554 455555555555544433
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.28 E-value=3.8e+02 Score=28.43 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=17.3
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 005674 462 VKHEDYFVNLAISLLSAYKK 481 (684)
Q Consensus 462 er~~d~Fv~La~~~Ls~~ke 481 (684)
.+|+.||+.|-..+++--.+
T Consensus 198 ~~C~GC~m~l~~~~~~~V~~ 217 (239)
T COG1579 198 RVCGGCHMKLPSQTLSKVRK 217 (239)
T ss_pred CcccCCeeeecHHHHHHHhc
Confidence 68999999999999887665
No 81
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=43.37 E-value=1.1e+02 Score=30.64 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=45.9
Q ss_pred ccCchhHHHHHHHhHHHHHHHhhcchhhhccCh----------------------HHHHHHHHHhhhhc----cccchhh
Q 005674 178 LTGGKEVHHAITSSIQDLATAISKYQDEVLVKR----------------------EELLQFAQTAITGL----KMNSDIE 231 (684)
Q Consensus 178 L~GgkevH~aivssiqdLA~afs~y~DEVLvKR----------------------eELLqfaQ~AIsGL----K~nadi~ 231 (684)
+.+|+++|..++..++....++..|...+-..- .+++.-++..|..| --+.|++
T Consensus 109 ~ak~kelh~~l~~~~~~~~~a~~~~~~~l~~~~~~~~~~~l~~lk~~g~~~~y~~~~~~~~a~~i~~~l~~~~~~~~d~~ 188 (276)
T PF12889_consen 109 FAKAKELHAKLLAAYEEFKAAYDAFDAALEKINDERRKEQLEALKKEGKMIIYYMLKLMIDAEQIIDELQSDDNQKFDMA 188 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTTTTHHHHHHHHHHHHHHHHHHHHHT-TTS--HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHH
Confidence 568999999999999888777766655322111 12344477777777 2346777
Q ss_pred hhhHHHHHHHHHHhhhhhhcc
Q 005674 232 RIDAEASDLKKRLEGMKALQN 252 (684)
Q Consensus 232 riD~Ea~~L~~kl~~~~~~~~ 252 (684)
.+++.+..+.+-+...+....
T Consensus 189 ~~~~~l~~~~~~~~~~~~~~~ 209 (276)
T PF12889_consen 189 ALDAALAELEKLLKDLKKLTK 209 (276)
T ss_dssp HHH--HHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 777666666666666664443
No 82
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.86 E-value=68 Score=29.14 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHH
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELsk 420 (684)
++-||.+||...-+..-+|..||..|.... -.-|.|...++=-+-|-.+|+.-|.+|..
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~e----Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRE----LSPEARRSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccC----CChHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 466788888777777777777777665432 34577888888888899999999999864
No 83
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=41.60 E-value=5.8e+02 Score=29.03 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhhHHHHHH-----HHHhhhchHHHHHHhhhhhcchhh
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAA-QARLRNAQEEREQFDEANDQI-----VEHLKTKEDELLKSIAACRVESDV 431 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA-~aRl~n~rEERdQFdEA~nqi-----v~hLK~KEdELskSIasc~vEA~v 431 (684)
|..|++.|--..+++.+++++.+..|..+ +.+.... =+++-.+- +..|+.|-.+|=..|..+.-.+
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~------~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~-- 178 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRIL------SDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNA-- 178 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccH--
Confidence 34466666666677777777776666655 2221111 12222222 3888888888888888775444
Q ss_pred HHHHHHhhchhhhHHHhHHHHHHhh
Q 005674 432 LSTWINFLEDSWVLQCSQMELKEKQ 456 (684)
Q Consensus 432 v~tWInFLEdTW~LQss~~e~kekq 456 (684)
+.+=.-||.-|=.+...+.++.++.
T Consensus 179 ~~~~~~fl~rtl~~e~~~~~L~~~~ 203 (511)
T PF09787_consen 179 ITAVVEFLKRTLKKEIERQELEERP 203 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333778887766665555544433
No 84
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=40.36 E-value=96 Score=32.53 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHhhhchHHHHHHhhhhhcchh---------------hHHHHHHhhchhhhHHHhHHHHHHhhhhHHHHhh
Q 005674 400 FDEANDQIVEHLKTKEDELLKSIAACRVESD---------------VLSTWINFLEDSWVLQCSQMELKEKQVSEELVKH 464 (684)
Q Consensus 400 FdEA~nqiv~hLK~KEdELskSIasc~vEA~---------------vv~tWInFLEdTW~LQss~~e~kekq~~dELer~ 464 (684)
|-=..-..+.+|.+=-+-+...|.+|.+|.= +|+.||.-|. -.+++|+.-.++|+|+
T Consensus 120 ~~~~~~~~L~~l~~~~~rf~~~l~~Cs~E~f~k~g~~~~Em~~~Er~lD~~IdlLk--------~d~LdE~~~~~~L~r~ 191 (274)
T PF12455_consen 120 FACRLIYKLSWLQALCHRFESALSRCSVEQFLKMGGLYPEMEPVERALDSWIDLLK--------KDQLDENTCADELERS 191 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hccccccccHHHHHHH
Confidence 3334445677777778888888999998841 3455555554 4788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005674 465 EDYFVNLAISLLS 477 (684)
Q Consensus 465 ~d~Fv~La~~~Ls 477 (684)
..||-+|+--|+.
T Consensus 192 i~~~~~l~~~~~~ 204 (274)
T PF12455_consen 192 IAYFSHLAEVHLP 204 (274)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988865
No 85
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=40.03 E-value=62 Score=37.09 Aligned_cols=77 Identities=36% Similarity=0.352 Sum_probs=51.1
Q ss_pred HHHHHhhhhccCCCChhhhhhhhhhHHHHHHhhhcchHHHhhhHhhh-h---hhhHHhhhhhhcccchhhHHHHHHH---
Q 005674 287 EGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDH-R---SQKEEALKVRVVKANESSEKEKEIG--- 359 (684)
Q Consensus 287 E~LlLkKksl~~GDS~e~haqkVDKLKvLseSLanSssKAEkRI~d~-R---~QKEeAL~fRv~K~nEvs~~EKEl~--- 359 (684)
|.+||+|-.++.= +||+. .|||.||+-. | +-|+=|.-=|=+|-.-+.++|.-+.
T Consensus 225 EkrLL~kEG~slP----------s~lPL---------TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~t 285 (472)
T KOG0709|consen 225 EKRLLTKEGYSLP----------SKLPL---------TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFT 285 (472)
T ss_pred HHHHHHhccCcCc----------ccCCc---------hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcc
Confidence 7788888877743 45554 7888888765 3 3577888888888888888887553
Q ss_pred HHHHHHHHhhh-------HHHHHHHHHhHH
Q 005674 360 AEISELVKQRD-------HLEAELKKVNLS 382 (684)
Q Consensus 360 aEI~~Lekqrd-------eLEAeLKkVN~s 382 (684)
+|=.+|.||-. .|-+||+|+.+.
T Consensus 286 aeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 286 AENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred cCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34445555544 445566665443
No 86
>PRK14151 heat shock protein GrpE; Provisional
Probab=39.89 E-value=2.8e+02 Score=27.83 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHH
Q 005674 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLST 434 (684)
Q Consensus 356 KEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~t 434 (684)
.++.++|..|+++.++|..++.+...-..-.+.| ..||--+..+-|...++..|=-=-|.|-+.+.+...+.+.++.
T Consensus 23 ~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR--~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~ 99 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVRRR--AEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKP 99 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHH
Confidence 3455667777777777777666555554444333 3344445566677777777777788888887765544433333
No 87
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=39.44 E-value=3.2e+02 Score=25.48 Aligned_cols=161 Identities=20% Similarity=0.228 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHhhhhhhccCCchhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhccCCCChhhh-hhhhh
Q 005674 233 IDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQ-IRVCTRLEGLLLKKKLLSYGDSPEVH-AQKVD 310 (684)
Q Consensus 233 iD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~a~~ea~keal~q-irlCSrlE~LlLkKksl~~GDS~e~h-aqkVD 310 (684)
+|.+...+.++++.+...-..-. ......+.+++....- +.+|+.++.|..-=..+..-.+++.+ ..-+.
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~ 95 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQ--------KSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALE 95 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHH
Confidence 68888888888887763221000 1111223333333333 44555555554322222222222222 22222
Q ss_pred hHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhh-cccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH--HHH
Q 005674 311 KLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRV-VKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLA--AAQ 387 (684)
Q Consensus 311 KLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv-~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~--aA~ 387 (684)
+ ...+..+|...+.+-...+.-+| ....++-..=+++...|..+++.+-+.++-..++...-. ...
T Consensus 96 ~-----------~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~ 164 (229)
T PF03114_consen 96 K-----------FGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKS 164 (229)
T ss_dssp H-----------HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBT
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 2 34455555444444444444444 223333344444555555555555555544444443210 000
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhh
Q 005674 388 ARLRNAQEEREQFDEANDQIVEHLK 412 (684)
Q Consensus 388 aRl~n~rEERdQFdEA~nqiv~hLK 412 (684)
..-..+++-+..|+..|++.+..|.
T Consensus 165 ~~~~~l~~a~~~f~~~~~~l~~~l~ 189 (229)
T PF03114_consen 165 SKEEKLEEAKEEFEALNEELKEELP 189 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0145566778888888888877665
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.31 E-value=6.4e+02 Score=28.90 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005674 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEER 397 (684)
Q Consensus 350 Evs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEER 397 (684)
|--.+++.+..++++.+++..+|-+.=..+-..++.+.+....+||.|
T Consensus 207 E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~ 254 (420)
T COG4942 207 ERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAA 254 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666554443333333333333333344433
No 89
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.06 E-value=2.3e+02 Score=34.00 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHhhhchHHHHHHhhh
Q 005674 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFD----EANDQIVEHLKTKEDELLKSIAA 424 (684)
Q Consensus 350 Evs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFd----EA~nqiv~hLK~KEdELskSIas 424 (684)
++..+-.+|..+..++++++++++..++++.........++..++++|+..- +--++++...+.+-+++-+.+..
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555556666665555555555555555555555555554432 22346777777776776666653
No 90
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.03 E-value=1.4e+02 Score=33.03 Aligned_cols=69 Identities=25% Similarity=0.437 Sum_probs=46.7
Q ss_pred HHH-HHHHHHHHHHHHhhhHHHHHHHHHhHHHHH-------------HHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHH
Q 005674 353 EKE-KEIGAEISELVKQRDHLEAELKKVNLSLAA-------------AQARLRNAQEEREQFDEANDQIVEHLKTKEDEL 418 (684)
Q Consensus 353 ~~E-KEl~aEI~~LekqrdeLEAeLKkVN~sL~a-------------A~aRl~n~rEERdQFdEA~nqiv~hLK~KEdEL 418 (684)
+.. .++-.++..|.++..++..+|.+++..|.. ...++..+++.+.+..+.-+++-..|+.-+++|
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 677777777777777777777666666432 345667777777777777777777777666666
Q ss_pred HHH
Q 005674 419 LKS 421 (684)
Q Consensus 419 skS 421 (684)
.++
T Consensus 406 ~~~ 408 (451)
T PF03961_consen 406 ERS 408 (451)
T ss_pred Hhh
Confidence 665
No 91
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=38.65 E-value=7.7e+02 Score=30.03 Aligned_cols=66 Identities=24% Similarity=0.244 Sum_probs=57.5
Q ss_pred hhHHHHHH-HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchH
Q 005674 351 SSEKEKEI-GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKED 416 (684)
Q Consensus 351 vs~~EKEl-~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEd 416 (684)
|+-+--|| ..||..|++|.-++|.|=.-+...|--++.-|..++.+=..|.+-.+....||++--.
T Consensus 255 v~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 255 VSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred cchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666776 5899999999999999999999999999999999999999999999998888876443
No 92
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=38.59 E-value=20 Score=32.15 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.5
Q ss_pred hHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005674 337 KEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ 394 (684)
Q Consensus 337 KEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~r 394 (684)
|+=...+|+=..+||...--.|..++..|.++.++|..++..++..|..+..+...++
T Consensus 9 ~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~ 66 (131)
T PF05103_consen 9 KEFKKSMRGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ 66 (131)
T ss_dssp ----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred CccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3334567888899999999999999999999999999999999999888766554444
No 93
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=38.08 E-value=76 Score=31.68 Aligned_cols=105 Identities=29% Similarity=0.349 Sum_probs=63.8
Q ss_pred hhhccCCCChhhhhhh--------hhhHHHHH-HhhhcchHHH---------hhhHhhhhhhhHHhhhhhhcccchhhHH
Q 005674 293 KKLLSYGDSPEVHAQK--------VDKLKVLS-ESLSNSSVKA---------EKRISDHRSQKEEALKVRVVKANESSEK 354 (684)
Q Consensus 293 Kksl~~GDS~e~haqk--------VDKLKvLs-eSLanSssKA---------EkRI~d~R~QKEeAL~fRv~K~nEvs~~ 354 (684)
.+-+.||-+|+.|-.- =|||+.+- .|-.-++.|- =-|. -.+|.+. ...||....+--+.
T Consensus 20 ee~~~n~~GpeFYl~~~S~sW~eVEdkLraIl~d~~Vp~~~K~ACaWsaLALgVR~--A~RQ~q~-q~~rV~~Lqd~~~~ 96 (152)
T PF15186_consen 20 EEMLRNGGGPEFYLENRSLSWEEVEDKLRAILEDSQVPREAKRACAWSALALGVRF--AARQRQL-QARRVQWLQDQAEE 96 (152)
T ss_pred HHHHhcCCCchHHHHhccCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHH
Confidence 3445788888888643 47887642 2222222110 0011 1223221 33455555543322
Q ss_pred HH-HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 005674 355 EK-EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQF 400 (684)
Q Consensus 355 EK-El~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQF 400 (684)
=| ---+=.++|.+.|++-|-|-|++-.+|-.+++.|+.++.|||..
T Consensus 97 hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD~L 143 (152)
T PF15186_consen 97 HKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKERDLL 143 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22244677888888899999999999999999999999999964
No 94
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=37.44 E-value=1.9e+02 Score=32.94 Aligned_cols=79 Identities=27% Similarity=0.284 Sum_probs=46.0
Q ss_pred hhhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhh-hhcc------cchhhHHHHH-----------HHHHHHHHHHhh
Q 005674 308 KVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKV-RVVK------ANESSEKEKE-----------IGAEISELVKQR 369 (684)
Q Consensus 308 kVDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~f-Rv~K------~nEvs~~EKE-----------l~aEI~~Lekqr 369 (684)
+-+|..+|+.||-..+.--=+-=.|-++||.++=.- |... ..|.-+-|-- ...|-..|.|+|
T Consensus 279 m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrker 358 (442)
T PF06637_consen 279 MTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKER 358 (442)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888899999877766555566778999887432 2211 1111111111 123556777777
Q ss_pred hHHHHHHHHHhHHHHHH
Q 005674 370 DHLEAELKKVNLSLAAA 386 (684)
Q Consensus 370 deLEAeLKkVN~sL~aA 386 (684)
|.|+.||..-...|.+.
T Consensus 359 d~L~keLeekkreleql 375 (442)
T PF06637_consen 359 DSLAKELEEKKRELEQL 375 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776555444433
No 95
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.34 E-value=8.3e+02 Score=29.60 Aligned_cols=60 Identities=28% Similarity=0.338 Sum_probs=37.9
Q ss_pred hhhhhhhhhhhhhHHHhhccCCChhHHHHHHHHHhhhccC-----chhHHHHHHHhHHHHHHHhh
Q 005674 141 RDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTG-----GKEVHHAITSSIQDLATAIS 200 (684)
Q Consensus 141 rdVFL~SqALEgI~lSmIleaP~eEEvsLLlEiFglCL~G-----gkevH~aivssiqdLA~afs 200 (684)
.|+|.++=-|--=-..-+|.++..|=-..|-+|||+-... =++++..+--.+.+|-...+
T Consensus 131 ~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 131 KDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777666555667778888777778889999976621 13444444444444444444
No 96
>PRK14158 heat shock protein GrpE; Provisional
Probab=37.10 E-value=2.7e+02 Score=28.43 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=51.6
Q ss_pred hhHHhhhhhhcccchhhHH------HHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHhhHHH
Q 005674 336 QKEEALKVRVVKANESSEK------EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ-----EEREQFDEAN 404 (684)
Q Consensus 336 QKEeAL~fRv~K~nEvs~~------EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~r-----EERdQFdEA~ 404 (684)
|=-|||+....|.-+.-+. .-+...++..|+.+.++|+++++..+..+-.++|-+.|.| |--+...-|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~ 89 (194)
T PRK14158 10 QIAEALKAKAAKEAEAAQGKPEAAQPVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGN 89 (194)
T ss_pred hhHHHHHHhhcccccccCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777666665443221 1123445556666666666666666665555555554433 3334445577
Q ss_pred HHHHHHhhhchHHHHHHhhhhh
Q 005674 405 DQIVEHLKTKEDELLKSIAACR 426 (684)
Q Consensus 405 nqiv~hLK~KEdELskSIasc~ 426 (684)
..++..|=-=-|.|-+.+..+.
T Consensus 90 ~~~~~~lLpV~DnLerAl~~~~ 111 (194)
T PRK14158 90 ESLILEILPAVDNMERALDHAD 111 (194)
T ss_pred HHHHHHHHhHHhHHHHHHhccC
Confidence 7777777667777777776543
No 97
>PRK09039 hypothetical protein; Validated
Probab=36.75 E-value=5.9e+02 Score=27.71 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=34.2
Q ss_pred hhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHhhHHHHHH
Q 005674 341 LKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARL----RNAQEEREQFDEANDQI 407 (684)
Q Consensus 341 L~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl----~n~rEERdQFdEA~nqi 407 (684)
|.++-.+.....+.-.+|.+++..++++|+.|+++++......+.+.+|+ ..+.+++..+.|+..+|
T Consensus 69 L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V 139 (343)
T PRK09039 69 LSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQV 139 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33444444444444444555555666666666666664433233333333 23455666777765544
No 98
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=35.97 E-value=3.3e+02 Score=26.09 Aligned_cols=60 Identities=28% Similarity=0.336 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 005674 354 KEKEIGAEISELVKQR-DHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKT 413 (684)
Q Consensus 354 ~EKEl~aEI~~Lekqr-deLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~ 413 (684)
..+.+.+.|..++-+- .++.+.|.+.|..|.+....|...+....+.-++.+..+..|+.
T Consensus 9 ~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~ 69 (136)
T PF04871_consen 9 EEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEA 69 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777555 67778888888888887766666555555544444444444443
No 99
>PF03836 RasGAP_C: RasGAP C-terminus; InterPro: IPR000593 Ras GTPase-activating protein (rasGAP) is a major contributor to the down-regulation of ras by facilitating GTP hydrolysis of activated ras. In addition, GAP participates in the down-stream effector system of the ras signalling pathway. Abnormal signal transduction involving activated ras genes plays a major role in the development of a variety of tumours. Depending on the precise genetic alteration, its location within the gene and the effects it exerts on protein function, rasGAP can theoretically function as either an oncogene or as a tumour suppressor gene [].; GO: 0005099 Ras GTPase activator activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3ISU_A 3IEZ_A 4EZA_B 1X0H_A.
Probab=35.78 E-value=12 Score=35.25 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchH
Q 005674 344 RVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKED 416 (684)
Q Consensus 344 Rv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEd 416 (684)
.|+..|--..+-.+|+.+|......|..-.+||+.+...|+.-...-.-.++..+++++-.++++..+..+-.
T Consensus 21 ~v~~~n~yQ~lln~IA~dI~~~~~~r~~r~~El~~l~~tl~~L~~k~~~l~~ql~~Y~~Yi~~~l~~~~~~~~ 93 (142)
T PF03836_consen 21 IVSRSNNYQDLLNDIAKDIRNKRRYREQRKQELEKLRQTLKNLNEKNKFLEEQLDSYNEYIKNCLSNLQSKKK 93 (142)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCCCcccHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3666788888999999999999999999999999999999999999999999999999999999998887644
No 100
>PRK14162 heat shock protein GrpE; Provisional
Probab=35.55 E-value=2.1e+02 Score=29.20 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHhhhchHHHHHHhhhh
Q 005674 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ-----EEREQFDEANDQIVEHLKTKEDELLKSIAAC 425 (684)
Q Consensus 355 EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~r-----EERdQFdEA~nqiv~hLK~KEdELskSIasc 425 (684)
+.+...||..|+.+..+|+++++..+..+-.++|-+.|.| |--+-.+-|...++..|=-=-|.|-+.+.++
T Consensus 34 ~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~ 109 (194)
T PRK14162 34 DQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVK 109 (194)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcc
Confidence 4455666666666666666666666666666666555543 3334455566666666666677777777654
No 101
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=35.51 E-value=50 Score=38.15 Aligned_cols=49 Identities=35% Similarity=0.391 Sum_probs=33.6
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhch
Q 005674 364 ELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKE 415 (684)
Q Consensus 364 ~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KE 415 (684)
-|||||-=|-.=-+|+|-.|+ ----++.|=|-|-|.|..|+|--+|-||
T Consensus 178 iLekQk~ilDeLr~Kl~lnl~---i~~lsteelr~qVD~A~~q~VnP~k~Ke 226 (621)
T KOG3759|consen 178 ILEKQKAILDELREKLELNLD---IDKLSTEELRRQVDDALKQLVNPFKEKE 226 (621)
T ss_pred HHHHHHHHHHHHHHHhhccCC---cccccHHHHHHHHHHHHHHHhChHHHHH
Confidence 477887655555566666666 1223688899999999988776555554
No 102
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.41 E-value=3.2e+02 Score=29.60 Aligned_cols=11 Identities=45% Similarity=0.676 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q 005674 269 TIEALKEALAQ 279 (684)
Q Consensus 269 ~~ea~keal~q 279 (684)
.++++++.|..
T Consensus 141 llegLk~~L~~ 151 (312)
T smart00787 141 LLEGLKEGLDE 151 (312)
T ss_pred HHHHHHHHHHH
Confidence 36667666665
No 103
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.23 E-value=1.2e+03 Score=30.62 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=37.9
Q ss_pred CCChhHHHHH-HHHHhhhc---cCchhHHHHHHHhHHHHHHHhhcchhhhccChHHHHHHHHHhhhhccccchh
Q 005674 161 APNEEEISLL-LEMFGLCL---TGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDI 230 (684)
Q Consensus 161 aP~eEEvsLL-lEiFglCL---~GgkevH~aivssiqdLA~afs~y~DEVLvKReELLqfaQ~AIsGLK~nadi 230 (684)
+.+..|+.-. -+++|+.. +...+.|.+++.- -.+++.+.+ .+ .|+.+.+.-..||.| +++.+|
T Consensus 147 ~~ti~Elk~~i~e~~Gl~~~qF~ri~~Y~~~Ll~q-G~f~~~L~a-~~----dR~kF~kLf~taiy~-~i~~~i 213 (1486)
T PRK04863 147 VLTLNELKDKAAALEGVQFKQFNSITDYHSLMFDL-GIIPRRLRS-SS----DRSKFYRLIEASLYG-GISSAI 213 (1486)
T ss_pred cCCHHHHHHHHHHhcCCceeeeccHHHHHHHHHHC-CCchhhhhc-cc----hHHHHHHHHHHHHHh-hHHHhH
Confidence 3466677664 46778765 6666677666633 444444444 22 377787778888775 444444
No 104
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=33.98 E-value=81 Score=29.65 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005674 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ 394 (684)
Q Consensus 359 ~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~r 394 (684)
..++..++.+...|++++++.+..+..+.+-+.|.+
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~ 45 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYR 45 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555554444444443
No 105
>PRK12704 phosphodiesterase; Provisional
Probab=33.91 E-value=4.5e+02 Score=30.30 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=11.5
Q ss_pred HhhhhHHHHhhHHHHHHHHHHHH
Q 005674 454 EKQVSEELVKHEDYFVNLAISLL 476 (684)
Q Consensus 454 ekq~~dELer~~d~Fv~La~~~L 476 (684)
+++++.+-++-+.+-+-.|++-.
T Consensus 179 ~~~~~~~a~~~a~~i~~~a~qr~ 201 (520)
T PRK12704 179 EEEAKEEADKKAKEILAQAIQRC 201 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555555555443
No 106
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.85 E-value=2.6e+02 Score=31.40 Aligned_cols=36 Identities=31% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA 393 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~ 393 (684)
...+|.+|++|.++|++++.+++..++++.++++-+
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999998888887544
No 107
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=33.76 E-value=7.2e+02 Score=29.96 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=23.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005674 347 KANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQE 395 (684)
Q Consensus 347 K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rE 395 (684)
|..+..++=.++-..=+.|.+-++..-+|++.|+..|++...-|...++
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~ 338 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKE 338 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555555555555554444443
No 108
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=33.43 E-value=1.2e+03 Score=30.14 Aligned_cols=49 Identities=27% Similarity=0.264 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Q 005674 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEA 403 (684)
Q Consensus 355 EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA 403 (684)
..+|.++|.++..+.+++..++..++..+.+|+.++..+++.+.+.++-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~ 971 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADAT 971 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888888888888887777777544443
No 109
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.21 E-value=5.5e+02 Score=26.33 Aligned_cols=108 Identities=17% Similarity=0.269 Sum_probs=62.2
Q ss_pred HHhhh-ccCchhHHHHHHHhHHHHHHHhhcchhhhccChHHHHHHHHHhhhhccccchhhhhhHHHHHHHHHHhhhhhhc
Q 005674 173 MFGLC-LTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQ 251 (684)
Q Consensus 173 iFglC-L~GgkevH~aivssiqdLA~afs~y~DEVLvKReELLqfaQ~AIsGLK~nadi~riD~Ea~~L~~kl~~~~~~~ 251 (684)
|.++- +||.-.....|.++|.|++.-+..|.-- +-...-.++-.... +..|+.++..|++|........
T Consensus 6 l~~~n~~t~~~~~~~~l~~~~e~~~~~L~~~~~~-~~~~~~~~~~~e~~---------l~~L~~d~~~L~~k~~~~~~~~ 75 (264)
T PF06008_consen 6 LQSVNALTGAWPAPYKLLSSIEDLTNQLRSYRSK-LNPQKQQLDPLEKE---------LESLEQDVENLQEKATKVSRKA 75 (264)
T ss_pred HhcCcchhhhhhhHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 7777778888999999999999999873 22233333333333 4456677778888877665322
Q ss_pred cCCchhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhccC
Q 005674 252 NSSNEDLEQASEKTTKATIEALKEALAQ-IRVCTRLEGLLLKKKLLSY 298 (684)
Q Consensus 252 ~~~~~~~~k~~~~~~~a~~ea~keal~q-irlCSrlE~LlLkKksl~~ 298 (684)
..-. ...+ .|..--++.... -.+...+.+++.+=..+..
T Consensus 76 ~~l~----~~t~----~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 76 QQLN----NNTE----RTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHH----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2111 1111 122222222222 3456666777777666665
No 110
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=33.19 E-value=4.7e+02 Score=30.11 Aligned_cols=10 Identities=40% Similarity=0.504 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q 005674 565 KELFDDIEKL 574 (684)
Q Consensus 565 keLf~~IeKl 574 (684)
--|+-+|-|+
T Consensus 358 AGLLHDIGK~ 367 (514)
T TIGR03319 358 AGLLHDIGKA 367 (514)
T ss_pred HHHHHhcCcc
Confidence 4456666664
No 111
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=33.08 E-value=4.3e+02 Score=26.88 Aligned_cols=54 Identities=28% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHhhhhhhccCCchhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcc
Q 005674 243 RLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQ-IRVCTRLEGLLLKKKLLS 297 (684)
Q Consensus 243 kl~~~~~~~~~~~~~~~k~~~~~~~a~~ea~keal~q-irlCSrlE~LlLkKksl~ 297 (684)
++..++.++..-........ .+..+--++++.+-++ -+.|.|++-|=|..+.-.
T Consensus 77 ~~~~lD~sRY~l~~p~~~~~-~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~ 131 (221)
T PF05700_consen 77 PMQGLDMSRYELPPPPSGKS-NDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGE 131 (221)
T ss_pred CCCccCHHhcCCCCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35555555543332221111 1222456777777777 788999987777666443
No 112
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=33.06 E-value=2.6e+02 Score=26.09 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=46.4
Q ss_pred HhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHH
Q 005674 339 EALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDEL 418 (684)
Q Consensus 339 eAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdEL 418 (684)
++..|...|..-+.++-+ .|...-+....+++++...+...+.....+|..++..|.+ |.+-|.|
T Consensus 56 ~~~e~~~~k~q~~~~~n~---~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~------------k~eyd~L 120 (139)
T PF05615_consen 56 AQFEFSILKSQLILEMNK---RERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN------------KEEYDAL 120 (139)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Confidence 445666666666555533 3555666666667777777777777777777776666654 2356777
Q ss_pred HHHhhhhhc
Q 005674 419 LKSIAACRV 427 (684)
Q Consensus 419 skSIasc~v 427 (684)
++.|.+-.+
T Consensus 121 a~~I~~~p~ 129 (139)
T PF05615_consen 121 AKKINSQPT 129 (139)
T ss_pred HHHHhcCCC
Confidence 777776543
No 113
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=33.03 E-value=4e+02 Score=28.01 Aligned_cols=82 Identities=24% Similarity=0.390 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhh-hcchhh
Q 005674 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAAC-RVESDV 431 (684)
Q Consensus 353 ~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc-~vEA~v 431 (684)
++|-++..+..+|..|-..|+-++.++.+. -.....||.||----.||-.|.+..+.++-..-... +---.+
T Consensus 31 e~e~~~~~d~~~L~~~Q~~L~~e~~~l~~e-------qQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~ 103 (228)
T PRK06800 31 EVEEEIQKDHEELLAQQKSLHKELNQLRQE-------QQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQET 103 (228)
T ss_pred hhcchhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666555443 334445566655555555555554444432221111 112357
Q ss_pred HHHHHHhhch
Q 005674 432 LSTWINFLED 441 (684)
Q Consensus 432 v~tWInFLEd 441 (684)
.-||-.||=|
T Consensus 104 ~~~~t~~Lwd 113 (228)
T PRK06800 104 AYEWTELLWD 113 (228)
T ss_pred HHHHHHHHHH
Confidence 7899999966
No 114
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=32.68 E-value=9.1e+02 Score=28.68 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=4.4
Q ss_pred CCCcchhhh
Q 005674 135 GEPLNFRDV 143 (684)
Q Consensus 135 gePmnFrdV 143 (684)
|.|.+..+|
T Consensus 116 ~~~~~~~~~ 124 (1179)
T TIGR02168 116 GQPCRLKDI 124 (1179)
T ss_pred CCcccHHHH
Confidence 455554443
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=32.65 E-value=4.2e+02 Score=24.78 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH
Q 005674 309 VDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQA 388 (684)
Q Consensus 309 VDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~a 388 (684)
..+++-+-+.......+...-..|.+.|.+-+-...-.=..|+..---. +.+|..|..+-..+..++..+.....+|..
T Consensus 9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhchHHHHH
Q 005674 389 RLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420 (684)
Q Consensus 389 Rl~n~rEERdQFdEA~nqiv~hLK~KEdELsk 420 (684)
.|...+..=..=...-..=|.-++.+-+||..
T Consensus 88 ~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 88 ELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 116
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=32.42 E-value=7.5e+02 Score=27.64 Aligned_cols=29 Identities=7% Similarity=-0.026 Sum_probs=17.7
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhhchh
Q 005674 458 SEELVKHEDYFVNLAISLLSAYKKELGPS 486 (684)
Q Consensus 458 ~dELer~~d~Fv~La~~~Ls~~keeL~ps 486 (684)
...|+.........+.++|...+..|...
T Consensus 351 ~~~l~~~~~~l~~~~~~~l~~~~~~l~~~ 379 (432)
T TIGR00237 351 QTRTEQLNRRLNALKNAQANLKLPQFGTL 379 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666776666666553
No 117
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.29 E-value=6.7e+02 Score=32.02 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=27.2
Q ss_pred HHHHHHhHHHHHHHhhcchhhhccChHHHHHHHHHh
Q 005674 185 HHAITSSIQDLATAISKYQDEVLVKREELLQFAQTA 220 (684)
Q Consensus 185 H~aivssiqdLA~afs~y~DEVLvKReELLqfaQ~A 220 (684)
|.-|+..++-+-+-++ |+++-|.+|-+|+++++.+
T Consensus 264 ~~ki~re~~~~Dk~i~-~ke~~l~erp~li~~ke~~ 298 (1141)
T KOG0018|consen 264 RGKIRRELQKVDKKIS-EKEEKLAERPELIKVKENA 298 (1141)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhhHHhhcchhh
Confidence 4456777777776665 6777899999999999986
No 118
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=32.14 E-value=2.4e+02 Score=29.81 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQA 388 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~a 388 (684)
+.+++..++.+..+++++|......+..|+.
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~ 127 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARV 127 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 119
>PRK14154 heat shock protein GrpE; Provisional
Probab=31.55 E-value=4.7e+02 Score=27.17 Aligned_cols=67 Identities=10% Similarity=0.266 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhh
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~ 426 (684)
|.++|..|+++.++|..++.+...-..-.+.| ..||--+..+-|+..++..|=-=-|.|-+.+.++.
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR--~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~ 123 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKR--IEREKADIIKFGSKQLITDLLPVADSLIHGLESPA 123 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc
Confidence 55677788888888887776665555444333 44455556677777777777777788888877654
No 120
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.25 E-value=4.5e+02 Score=24.71 Aligned_cols=64 Identities=19% Similarity=0.382 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHH
Q 005674 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420 (684)
Q Consensus 357 El~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELsk 420 (684)
.+...+..|+...+.|.....++...++.+.-.+..+.+.-.+...........+|...||+.|
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333333333333333344444444444
No 121
>PRK09465 tolC outer membrane channel protein; Reviewed
Probab=31.21 E-value=4.5e+02 Score=27.79 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchh
Q 005674 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESD 430 (684)
Q Consensus 351 vs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~ 430 (684)
......++..++...--+...+..+++-....+..|...++.+ +.+|..+..-+++.|.++.+-+..-..--++..+
T Consensus 333 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~y~~G~~~~~dvl~a~~~l~~a~~~~~~a~~~ 409 (446)
T PRK09465 333 LESAHRSVVQTVRSSFNNINASISSINAYEQAVVSAQSSLDAT---EAGYEVGTRTIVDVLDATTTLYDAKQQLSNARYN 409 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655555566666666666666555555543 6789999999999999998887777777777788
Q ss_pred hHHHHHH
Q 005674 431 VLSTWIN 437 (684)
Q Consensus 431 vv~tWIn 437 (684)
...+++.
T Consensus 410 ~~~a~~~ 416 (446)
T PRK09465 410 YLINQLN 416 (446)
T ss_pred HHHHHHH
Confidence 8777733
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.19 E-value=1.7e+02 Score=28.88 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005674 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQ 399 (684)
Q Consensus 356 KEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQ 399 (684)
+.+..+|.++.+--+.|-+|+--+|+.++.+..++..+++|-++
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999988543
No 123
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=31.02 E-value=5.5e+02 Score=25.67 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=15.7
Q ss_pred HHhhhhhHHHHHhhhcCCC-CCCchHHHHHHHHHHHH
Q 005674 539 FSVVDNMKEQFYAQRGANS-RKDDPRVKELFDDIEKL 574 (684)
Q Consensus 539 fSivD~mk~~fy~~q~~~s-Rkdd~~vkeLf~~IeKl 574 (684)
|=+-.||-...+++.=.+. ....+.+.+|...+..+
T Consensus 262 ~lLn~nI~~L~~~q~~~~~~l~~~~~l~nl~~~l~~l 298 (302)
T PF10186_consen 262 FLLNKNIAQLCFSQGIDVPLLDPRDTLGNLLNLLWSL 298 (302)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCchhhHHHHHHHHhhh
Confidence 3344455555553322222 23344555555554433
No 124
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.90 E-value=4.8e+02 Score=26.08 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhh
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~ 426 (684)
+..+|..|+++.++|..++.+...-+.-.+ .+..||--+..+-|+..++..|=-=-|.|-+.+.++.
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~r--kR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~ 89 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQR--KRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAG 89 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccc
Confidence 555666777777766666654444433333 3334444455666777777777777788888776654
No 125
>PRK13042 superantigen-like protein; Reviewed
Probab=30.73 E-value=86 Score=34.04 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=12.5
Q ss_pred CccccCCCCCccCCCCCCCCCCC
Q 005674 614 QRTTTQKPDISEHREKPVHKGEQ 636 (684)
Q Consensus 614 ~~~~t~~~~~~~~p~~~~~~~~~ 636 (684)
..+.||......+|.||..+.-+
T Consensus 74 p~~~tp~~~~~~~pq~~~~~~~~ 96 (291)
T PRK13042 74 PNATTPSSTKVETPQSPTTKQVP 96 (291)
T ss_pred CCCCCCCccCcCCCCCCchhhhh
Confidence 33455555555667765555443
No 126
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=30.45 E-value=74 Score=27.88 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005674 369 RDHLEAELKKVNLSLAAAQARLRNAQEE 396 (684)
Q Consensus 369 rdeLEAeLKkVN~sL~aA~aRl~n~rEE 396 (684)
.++|.+++||+|..-..+.+.||++-|+
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEd 31 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAED 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688999999999999999999998775
No 127
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=29.99 E-value=4e+02 Score=26.51 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhhhchHHHHHHhhh
Q 005674 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE-REQFDEANDQIVEHLKTKEDELLKSIAA 424 (684)
Q Consensus 356 KEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEE-RdQFdEA~nqiv~hLK~KEdELskSIas 424 (684)
..+...|..-++.+.+.++-.+..+..|..|+.+....+.| |+ .+.......-+.-|.+|-.+|-.
T Consensus 44 ~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~---~~~a~~~~~~~~~ea~L~~~~~~ 110 (155)
T PRK06569 44 TNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKID---SLESEFLIKKKNLEQDLKNSINQ 110 (155)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888889999999999999999999999888887 64 45555555556666666665543
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.87 E-value=1.9e+02 Score=32.98 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQE 395 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rE 395 (684)
+-.||+.++.|+-+.++.|++++..+.....+|..++.
T Consensus 71 ~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 71 LETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444444444455555554444444444443
No 129
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.83 E-value=1.1e+03 Score=28.61 Aligned_cols=78 Identities=22% Similarity=0.210 Sum_probs=35.3
Q ss_pred hHHHHHHhhhhhcchhhHHHHHHhhchhhhHHHhHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 005674 415 EDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFV 494 (684)
Q Consensus 415 EdELskSIasc~vEA~vv~tWInFLEdTW~LQss~~e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V 494 (684)
|-++.+.+..++..-..++.+|.=+..+|.-|-...+..++... .- +.|.-.+...-++.|..-=..|...|
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~-------~s-~~L~~~Q~~~I~~iL~~~~~~I~~~v 705 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKK-------KS-IVLSESQKRTIKEILKQQGEEIDELV 705 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-------CC-ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555566555443331111100 00 12344444444555555555566666
Q ss_pred Hhhhcc
Q 005674 495 ENLKNL 500 (684)
Q Consensus 495 ~nLk~l 500 (684)
..+|.+
T Consensus 706 ~~ik~i 711 (717)
T PF10168_consen 706 KQIKNI 711 (717)
T ss_pred HHHHHH
Confidence 655554
No 130
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.26 E-value=4.6e+02 Score=26.60 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=12.1
Q ss_pred HHHHHHhhhhccCCCChhhhhhhhhh
Q 005674 286 LEGLLLKKKLLSYGDSPEVHAQKVDK 311 (684)
Q Consensus 286 lE~LlLkKksl~~GDS~e~haqkVDK 311 (684)
.-.|+-+=+.+.--||...-..+-..
T Consensus 52 f~~l~e~v~~l~idd~~~~f~~~~~t 77 (190)
T PF05266_consen 52 FANLAEKVKKLQIDDSRSSFESLMKT 77 (190)
T ss_pred HHHHHHHHHHcccCCcHHHHHHHHHH
Confidence 34444444555555554444443333
No 131
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.25 E-value=6e+02 Score=25.52 Aligned_cols=37 Identities=30% Similarity=0.184 Sum_probs=19.3
Q ss_pred HHHHHHhhhhccCCCChhhhhhhhhhHHHHHHhhhcc
Q 005674 286 LEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNS 322 (684)
Q Consensus 286 lE~LlLkKksl~~GDS~e~haqkVDKLKvLseSLanS 322 (684)
||.++=|.+.|..=-.-++--.-||=..|=.|-..+|
T Consensus 17 LEK~~pK~~gI~~~~VKdvlq~LvDDglV~~EKiGss 53 (188)
T PF03962_consen 17 LEKLAPKEKGIVSMSVKDVLQSLVDDGLVHVEKIGSS 53 (188)
T ss_pred HHHHcccccCCchhhHHHHHHHHhccccchhhhccCe
Confidence 3555555566664444455555555555544444443
No 132
>PRK01156 chromosome segregation protein; Provisional
Probab=29.11 E-value=1.1e+03 Score=28.33 Aligned_cols=38 Identities=8% Similarity=0.274 Sum_probs=18.8
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 005674 364 ELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFD 401 (684)
Q Consensus 364 ~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFd 401 (684)
...++..+|+.+|++++..|+.-...+....+-+..+.
T Consensus 519 ~~~~~~~~l~~~l~~~~~~l~~le~~~~~~~~l~~~~~ 556 (895)
T PRK01156 519 NEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYK 556 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666555554444444444444443
No 133
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.98 E-value=5.8e+02 Score=25.97 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhh
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAAC 425 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc 425 (684)
+..+|..|+++.++|..++.+...-.--.+.|. .+|--+..+-|...++..|=-=-|.|-+.+.++
T Consensus 37 l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~--~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~ 102 (185)
T PRK14139 37 LEAELAEAEAKAAELQDSFLRAKAETENVRRRA--QEDVAKAHKFAIESFAESLLPVKDSLEAALADE 102 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcc
Confidence 445677777777777777766655555444433 344445556677777777766677777777543
No 134
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.44 E-value=1.4e+03 Score=29.46 Aligned_cols=115 Identities=25% Similarity=0.276 Sum_probs=80.8
Q ss_pred HhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH------------H
Q 005674 326 AEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRN------------A 393 (684)
Q Consensus 326 AEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n------------~ 393 (684)
--.+|.-|+.|+-.+|+.+-.=..++.+.++ |++..+.....|-.+=+..+..|+...-+.+. .
T Consensus 312 lq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~----EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFss 387 (1200)
T KOG0964|consen 312 LQDQITGNEQQRNLALHVLQKVKDKIEEKKD----ELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSS 387 (1200)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCc
Confidence 3468899999999999988666666665555 44556666666666666666666665554443 3
Q ss_pred HHHHHHhh----HHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhchhhh
Q 005674 394 QEEREQFD----EANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWV 444 (684)
Q Consensus 394 rEERdQFd----EA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLEdTW~ 444 (684)
.+|||-|= +--++.|...+-+++-|.+.|..-+.+-.-...-|+=|+++--
T Consensus 388 k~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 388 KEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 48888884 3345667778888888888888888887777777777777544
No 135
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.44 E-value=5.1e+02 Score=24.45 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=6.5
Q ss_pred hhHHHHHHhhc
Q 005674 430 DVLSTWINFLE 440 (684)
Q Consensus 430 ~vv~tWInFLE 440 (684)
.++..|-+|+.
T Consensus 207 ~~~~~W~~~~~ 217 (218)
T cd07596 207 KIAEAWESLLP 217 (218)
T ss_pred HHHHHHHhhCC
Confidence 34666766654
No 136
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=28.35 E-value=3.2e+02 Score=28.41 Aligned_cols=94 Identities=21% Similarity=0.266 Sum_probs=61.3
Q ss_pred Hhhhhhhcccchhh----HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 005674 339 EALKVRVVKANESS----EKEKEIGAEISELVKQRDHLEAELKKVNLSLAA-AQARLRNAQEEREQFDEANDQIVEHLKT 413 (684)
Q Consensus 339 eAL~fRv~K~nEvs----~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~a-A~aRl~n~rEERdQFdEA~nqiv~hLK~ 413 (684)
--+++...|.+.++ -..++|.+|-..|++|.++.+.+|.++..--.- ..-.+.+++.-.+....+.-+.+.-|..
T Consensus 113 ~~~ns~~~k~~~~g~~~~~~~~el~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~ 192 (221)
T PF10376_consen 113 YLLNSSSPKIQKMGGYEELKQQELEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQS 192 (221)
T ss_pred hhhhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666553 346899999999999999999999887654222 1222334555566666666676776666
Q ss_pred chHH-------HHHHhhhhhcchhhH
Q 005674 414 KEDE-------LLKSIAACRVESDVL 432 (684)
Q Consensus 414 KEdE-------LskSIasc~vEA~vv 432 (684)
.-.+ |.--|..++++-++|
T Consensus 193 ~~~~~e~~~~TM~eL~~~l~ID~~LI 218 (221)
T PF10376_consen 193 EMSEEEGEKFTMGELIKRLGIDYDLI 218 (221)
T ss_pred HHhhccccCccHHHHHHHhCCCcccc
Confidence 5444 666677777766654
No 137
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.10 E-value=2.1e+02 Score=27.49 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH
Q 005674 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQ 387 (684)
Q Consensus 357 El~aEI~~LekqrdeLEAeLKkVN~sL~aA~ 387 (684)
+|..|+..|.+....|+++|+.++.++....
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e 113 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEE 113 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4445555555555555555555555554443
No 138
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.02 E-value=8.9e+02 Score=27.09 Aligned_cols=64 Identities=30% Similarity=0.481 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcch--hhHHHHHH
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVES--DVLSTWIN 437 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA--~vv~tWIn 437 (684)
..|..++.+...=+-+++.|+..+.+-..|+.. ..+.+|.++ .+..+-|.|+- ..++.|..
T Consensus 431 ~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~--~~~~d~~~~---------------~~~~~d~~i~~~~~~l~~W~~ 493 (503)
T KOG2273|consen 431 EKVNELEELLALKELELDEISERIRAELERFEE--SRRQDFKES---------------LKKYADLHVEYAEQILKAWEK 493 (503)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333334444666666666555544 445555555 33333344332 34999999
Q ss_pred hhc
Q 005674 438 FLE 440 (684)
Q Consensus 438 FLE 440 (684)
|++
T Consensus 494 ~~~ 496 (503)
T KOG2273|consen 494 FLP 496 (503)
T ss_pred hcc
Confidence 987
No 139
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.02 E-value=1.6e+02 Score=25.36 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH
Q 005674 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQA 388 (684)
Q Consensus 353 ~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~a 388 (684)
.+..+|...+..+++..+.|+.+++.+...+.....
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333
No 140
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.71 E-value=7e+02 Score=26.38 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=38.6
Q ss_pred HHhhhHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcc
Q 005674 366 VKQRDHLEAELKKVNLSLAAAQARLRNAQ--------------EEREQFDEANDQIVEHLKTKEDELLKSIAACRVE 428 (684)
Q Consensus 366 ekqrdeLEAeLKkVN~sL~aA~aRl~n~r--------------EERdQFdEA~nqiv~hLK~KEdELskSIasc~vE 428 (684)
|.+|.+.+.+-.++-...+.|.++++.++ |.+.+| ++++...|.+.++|-+.|..|+..
T Consensus 134 E~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~----~~~l~~~k~~v~~Le~~v~~aK~~ 206 (239)
T PF05276_consen 134 EQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKF----NQQLEEQKEKVEELEAKVKQAKSR 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555444 555665 567788899999999999999865
No 141
>PRK14145 heat shock protein GrpE; Provisional
Probab=27.66 E-value=4.3e+02 Score=27.22 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhh
Q 005674 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLR-----NAQEEREQFDEANDQIVEHLKTKEDELLKSIAA 424 (684)
Q Consensus 356 KEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~-----n~rEERdQFdEA~nqiv~hLK~KEdELskSIas 424 (684)
+....+|..|+.+.++|+++++.....+-.+.|-+. ..||--+..+-|...++..|=-=-|.|-+.+.+
T Consensus 41 ~~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~ 114 (196)
T PRK14145 41 QQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS 114 (196)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc
Confidence 344555555666666666666665555555554443 345555667778877777777777888877765
No 142
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=27.14 E-value=1.1e+02 Score=26.87 Aligned_cols=34 Identities=35% Similarity=0.381 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH
Q 005674 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARL 390 (684)
Q Consensus 357 El~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl 390 (684)
||.+-|+-|+....-|+|||+|-..+-.||.+=+
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~~srsAAeaLF 62 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKKASRSAAEALF 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 5667788899999999999999999988887744
No 143
>PHA03093 EEV glycoprotein; Provisional
Probab=26.99 E-value=28 Score=35.50 Aligned_cols=22 Identities=41% Similarity=1.058 Sum_probs=15.4
Q ss_pred hhhhcch------hhHHHH-HHhhchhhh
Q 005674 423 AACRVES------DVLSTW-INFLEDSWV 444 (684)
Q Consensus 423 asc~vEA------~vv~tW-InFLEdTW~ 444 (684)
+.|.... +++++| ..||+|||-
T Consensus 125 ~~C~~~g~~LPs~~l~~~WL~dYLegTWg 153 (185)
T PHA03093 125 ADCAKKSSTLPNSNLMTTWLSDYLEDTWG 153 (185)
T ss_pred HHHHhcCCcCCCcchHHHHHHHHhhcccc
Confidence 4566553 677889 468899984
No 144
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=26.94 E-value=4.3e+02 Score=23.11 Aligned_cols=91 Identities=30% Similarity=0.342 Sum_probs=51.8
Q ss_pred hhhhhhHHhhhh-hhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHH--h----------HHHHHHHHHHHHHHHHHH
Q 005674 332 DHRSQKEEALKV-RVVKANESSEKEKEIGAEISELVKQRDHLEAELKKV--N----------LSLAAAQARLRNAQEERE 398 (684)
Q Consensus 332 d~R~QKEeAL~f-Rv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkV--N----------~sL~aA~aRl~n~rEERd 398 (684)
+--.++.+||.- .+..-.++......+..+|..++++|..+.+.++.. . ..|.+...+|...-++=.
T Consensus 22 ~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~ 101 (143)
T PF05130_consen 22 ELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIEEREELQALWRELRELLEELQ 101 (143)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 333444455543 344556667778889999999999999998887655 2 233334444444444444
Q ss_pred HhhHHHHHHHHHhhhchHHHHHHh
Q 005674 399 QFDEANDQIVEHLKTKEDELLKSI 422 (684)
Q Consensus 399 QFdEA~nqiv~hLK~KEdELskSI 422 (684)
.-.+.|.+++.+...--+.+...|
T Consensus 102 ~~n~~N~~ll~~~~~~~~~~l~~l 125 (143)
T PF05130_consen 102 ELNERNQQLLEQALEFVQQLLNLL 125 (143)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444444433
No 145
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.87 E-value=1.2e+03 Score=28.07 Aligned_cols=253 Identities=21% Similarity=0.216 Sum_probs=117.2
Q ss_pred HHHHhhcchhhhccChHHHHHHHHHhhhhccc--------cchhhhhhHHHHHHHHHHhhhhhhccCCchhhhhhhhhhh
Q 005674 195 LATAISKYQDEVLVKREELLQFAQTAITGLKM--------NSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTT 266 (684)
Q Consensus 195 LA~afs~y~DEVLvKReELLqfaQ~AIsGLK~--------nadi~riD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~ 266 (684)
+-+..+.-+.|.- .-||=.+-.|.-+++||- -+|+.|+..|--.|++.|+.+..-. ..-..+.-+ ..
T Consensus 292 ~~~~l~~l~~Eie-~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~---d~l~k~vw~-~~ 366 (581)
T KOG0995|consen 292 MEKKLEMLKSEIE-EKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSEL---DRLSKEVWE-LK 366 (581)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh-HH
Confidence 3344444444432 233334556666777763 2577777777777777777776211 111111111 11
Q ss_pred HHHHHH-HHHHHHH-HHHHHHHHHHHHh--hhhccCCCChhhhhhhhh----hHHHHHHhhhcchHHHhhhHhhhhhhhH
Q 005674 267 KATIEA-LKEALAQ-IRVCTRLEGLLLK--KKLLSYGDSPEVHAQKVD----KLKVLSESLSNSSVKAEKRISDHRSQKE 338 (684)
Q Consensus 267 ~a~~ea-~keal~q-irlCSrlE~LlLk--Kksl~~GDS~e~haqkVD----KLKvLseSLanSssKAEkRI~d~R~QKE 338 (684)
.-+++ |++...+ +.+-+.+-.|.|. +-+..-|=+|+--+-++= +.+++-..|.+++ .
T Consensus 367 -l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei--------------~ 431 (581)
T KOG0995|consen 367 -LEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEI--------------S 431 (581)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHH--------------H
Confidence 12333 4444444 4444444555555 111112345555555443 3334333444433 3
Q ss_pred HhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHH
Q 005674 339 EALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDEL 418 (684)
Q Consensus 339 eAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdEL 418 (684)
+-++=++.+.--...-=.++.+=|+++....-.++-+|++++..-. ...++++|+
T Consensus 432 ~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~---~~k~e~eee---------------------- 486 (581)
T KOG0995|consen 432 EELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE---LKKEEAEEE---------------------- 486 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----------------------
Confidence 3332222221111112223444455555555555555555554321 111223332
Q ss_pred HHHhhhhhcchhhHHHHHHhhchhhhHHHhHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhh
Q 005674 419 LKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLK 498 (684)
Q Consensus 419 skSIasc~vEA~vv~tWInFLEdTW~LQss~~e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk 498 (684)
-..|+.|+..+-.=++=|.=+-.-+-+-.++..+.++.||+|. ++-.-.+-...-++|.-.|+.|-+|+.+..
T Consensus 487 ---~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~----~~~~~eer~ki~~ql~~~i~~i~~~k~~iq 559 (581)
T KOG0995|consen 487 ---WKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRM----VATGEEERQKIAKQLFAVIDQISDFKVSIQ 559 (581)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666665555544444333333334455667777777664 334445555555566666666666665544
Q ss_pred c
Q 005674 499 N 499 (684)
Q Consensus 499 ~ 499 (684)
+
T Consensus 560 s 560 (581)
T KOG0995|consen 560 S 560 (581)
T ss_pred H
Confidence 3
No 146
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=26.80 E-value=1.7e+02 Score=29.18 Aligned_cols=44 Identities=32% Similarity=0.373 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHhhH
Q 005674 359 GAEISELVKQRDHLEAEL-----------KKVNLSLAAAQARLRNAQEEREQFDE 402 (684)
Q Consensus 359 ~aEI~~LekqrdeLEAeL-----------KkVN~sL~aA~aRl~n~rEERdQFdE 402 (684)
.++|..||++.++||.++ .+|=.+|..++..|.++...|+.+.+
T Consensus 4 ~~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~ 58 (174)
T PF07426_consen 4 MSALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKE 58 (174)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 467888999999999988 23446788888888888888887764
No 147
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.64 E-value=4.4e+02 Score=25.11 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHh
Q 005674 360 AEISELVKQRDHLEAELKKVN 380 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN 380 (684)
.||+.|+++||.|.+|+-+.-
T Consensus 37 ~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 37 EELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666665543
No 148
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=26.38 E-value=7.7e+02 Score=25.84 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005674 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQE 395 (684)
Q Consensus 358 l~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rE 395 (684)
+.+++..++.+.+.++++++..+.++..++.++..+++
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555544444
No 149
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.32 E-value=6.2e+02 Score=24.84 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=40.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhh
Q 005674 372 LEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (684)
Q Consensus 372 LEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~ 426 (684)
|++++-.|...|+.-++-|.+++.|++- -++.+...|-|..+|-.+..+|.
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~----L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKEN----LDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHH
Confidence 6677777777777777888888888854 56888889999999988887765
No 150
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.22 E-value=1.1e+02 Score=25.99 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=15.1
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 005674 365 LVKQRDHLEAELKKVNLSLAAAQARLRN 392 (684)
Q Consensus 365 LekqrdeLEAeLKkVN~sL~aA~aRl~n 392 (684)
+|.+...||.+|...+..+.+|..|++.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555543
No 151
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=25.94 E-value=9.1e+02 Score=26.54 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=16.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhchhhHHH
Q 005674 461 LVKHEDYFVNLAISLLSAYKKELGPSISRI 490 (684)
Q Consensus 461 Ler~~d~Fv~La~~~Ls~~keeL~psI~rI 490 (684)
|+.....+...+.+.|..++..|..+..++
T Consensus 359 L~~L~~rL~~a~~~~L~~~~~rL~~l~~rL 388 (438)
T PRK00286 359 LEQLEQRLRRAMRRQLKRKRQRLEALAQQL 388 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666666544444
No 152
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.63 E-value=2.3e+02 Score=25.19 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH
Q 005674 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARL 390 (684)
Q Consensus 355 EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl 390 (684)
++-+..-|..|+++.+.|+.++++++..++.-...+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666665555555444
No 153
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=25.48 E-value=2.4e+02 Score=28.78 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=35.4
Q ss_pred hhhhhhHHHhhchhhhhhhhhhhhcccccccccHHHHHHHHHHhh--hhccchhHHHHHHHHHHHHHHHHh
Q 005674 26 KNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAA--LSCRGPERVMLLRRWLTVLKEVEK 94 (684)
Q Consensus 26 ~~YadsVv~hAGqAVaeGAKilqdRig~rnykS~k~TvkRLEeaa--vs~rG~ERvqlLRRWl~~Lkeier 94 (684)
+++|++.+.- |++-|+-.+++.+ +....+..|.++. .+-.+.-|..+.|.|+.+|+++=+
T Consensus 178 ~~ea~a~~~~-Aeg~a~a~~~~A~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~ 239 (262)
T cd03407 178 EADAEAKRLQ-GVGAAEQRQAIAD--------GLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239 (262)
T ss_pred HHHHHHHHHh-hhhHHHHHHHHHH--------HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 4555555544 4555554443332 3333333344333 445666788999999999999865
No 154
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=25.36 E-value=8.8e+02 Score=26.15 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHhH------HHHHHHHHHHH-HHHHHHHhhHHHHHHHHHhhhchHHHHHHhh
Q 005674 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNL------SLAAAQARLRN-AQEEREQFDEANDQIVEHLKTKEDELLKSIA 423 (684)
Q Consensus 351 vs~~EKEl~aEI~~LekqrdeLEAeLKkVN~------sL~aA~aRl~n-~rEERdQFdEA~nqiv~hLK~KEdELskSIa 423 (684)
+...-+++..++..|.++|..++.+||.... .|=++.+.+.. ..+|-..||--.++|-..+..|+ .|-+.|.
T Consensus 193 ~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll~~~~~~e~lF~~eL~kf~~~~~~v~~~~~~Q~-~ll~~i~ 271 (339)
T cd09238 193 IVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGSYDALFKEELKKYDSVREAVSKNISSQD-DLLSRLR 271 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHH
Confidence 4456788999999999999999999965321 22223333333 45677788888888887766654 4444455
Q ss_pred h
Q 005674 424 A 424 (684)
Q Consensus 424 s 424 (684)
.
T Consensus 272 ~ 272 (339)
T cd09238 272 A 272 (339)
T ss_pred H
Confidence 4
No 155
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.90 E-value=2.9e+02 Score=24.39 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHH
Q 005674 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420 (684)
Q Consensus 350 Evs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELsk 420 (684)
..+.+-|+|-.|+..|..+-.+|.+++++.+.+++. ..|.-...--...|..|-.|-|.+++
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~---------~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGR---------RKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCh---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999988643 34444555555666666666665544
No 156
>PRK12705 hypothetical protein; Provisional
Probab=24.89 E-value=1.2e+03 Score=27.37 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=17.1
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHH
Q 005674 452 LKEKQVSEELVKHEDYFVNLAISLLS 477 (684)
Q Consensus 452 ~kekq~~dELer~~d~Fv~La~~~Ls 477 (684)
..+.++..+-++-+..++-.|++-..
T Consensus 165 ~~e~~~~~~a~~~A~~ii~~aiqr~a 190 (508)
T PRK12705 165 KIEEEADLEAERKAQNILAQAMQRIA 190 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666777777777777776543
No 157
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.70 E-value=9e+02 Score=29.26 Aligned_cols=111 Identities=21% Similarity=0.195 Sum_probs=81.0
Q ss_pred hhhhhhhhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhh---cccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005674 303 EVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRV---VKANESSEKEKEIGAEISELVKQRDHLEAELKKV 379 (684)
Q Consensus 303 e~haqkVDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv---~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkV 379 (684)
+++..|||.....-.-|.++++.+|+.+.+-.++=-+...+=. ....-.-+...-|.--+.+|.+|+++=-+|++.|
T Consensus 50 ~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el 129 (660)
T KOG4302|consen 50 EIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKEL 129 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555788888888788999999999999998887666655544 4455555666667778888888888888877764
Q ss_pred h-----------------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 005674 380 N-----------------------------LSLAAAQARLRNAQEEREQFDEANDQIVEHLKT 413 (684)
Q Consensus 380 N-----------------------------~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~ 413 (684)
- ..|..=+++|..+++|+..==+=++.++..++.
T Consensus 130 ~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~ 192 (660)
T KOG4302|consen 130 YHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKS 192 (660)
T ss_pred HHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 567788889999998887655555555544443
No 158
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.48 E-value=4.2e+02 Score=28.58 Aligned_cols=39 Identities=28% Similarity=0.482 Sum_probs=19.0
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Q 005674 364 ELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDE 402 (684)
Q Consensus 364 ~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdE 402 (684)
++.+.+.+|-.+|......+++-+-||+..+-|..|..|
T Consensus 146 E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 146 ELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555555555555444
No 159
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=24.35 E-value=6.9e+02 Score=24.56 Aligned_cols=134 Identities=24% Similarity=0.189 Sum_probs=94.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhh
Q 005674 347 KANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (684)
Q Consensus 347 K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~ 426 (684)
|--.|.+.-|+...+-.-|+.+..-||++|.-+...+..+..-.-|.+.+ |..|+++-..++.....-.
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e-----------ie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE-----------IETLEEELEELTSELNQLE 72 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 34467788899999999999999999999999999888887776666554 7788999999888888888
Q ss_pred cchhhHHHHHHhhchhhhHHHhHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhc
Q 005674 427 VESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKN 499 (684)
Q Consensus 427 vEA~vv~tWInFLEdTW~LQss~~e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk~ 499 (684)
.|-+.+..=-.=|. =+|| +.+.--.||+.+...|.++....=.......+.+=..+..+-..|+.
T Consensus 73 ~EL~~l~sEk~~L~--k~lq------~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 73 LELDTLRSEKENLD--KELQ------KKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHHHH--HHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88777764321111 1222 33334468999999999888776666555555544444444444443
No 160
>PRK14155 heat shock protein GrpE; Provisional
Probab=23.89 E-value=6.1e+02 Score=26.23 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhh
Q 005674 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (684)
Q Consensus 356 KEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~ 426 (684)
.++..+|..|+++.++|..++.+...-+.-.+-|.. ||--+...-|...++..|=-=-|.|-+.+.+..
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~--kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~ 84 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAE--REMNDARAYAIQKFARDLLGAADNLGRATAASP 84 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHHhhHHHHHhccc
Confidence 566667777777777777777666665554444433 333344556666677666666777777766543
No 161
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=23.75 E-value=8.7e+02 Score=25.53 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-chHHHHHHhhhhhcchhhHHHHHHh
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKT-KEDELLKSIAACRVESDVLSTWINF 438 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~-KEdELskSIasc~vEA~vv~tWInF 438 (684)
.+|..|.++..++|.+|+..-..+..|.....++-..|.+=--=.|..+..=.+ --.+|.+--.-|+-|..
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~-------- 103 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHE-------- 103 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhh--------
Confidence 567788888888888887776666666666666666665433333333222111 23355554444444432
Q ss_pred hchhhhHHHhHHHHHHhhhhHHHHhh----HHHHHHHHHHHHHHHHHhh--chhhHHHHHH
Q 005674 439 LEDSWVLQCSQMELKEKQVSEELVKH----EDYFVNLAISLLSAYKKEL--GPSISRIGKF 493 (684)
Q Consensus 439 LEdTW~LQss~~e~kekq~~dELer~----~d~Fv~La~~~Ls~~keeL--~psI~rI~~~ 493 (684)
++..+.++...|+.+ ...|-+|....|.-|-||- +.-|+|.-||
T Consensus 104 -----------~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr~STw 153 (207)
T PF05546_consen 104 -----------NEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIRRASTW 153 (207)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 233444444444433 3578999999999999884 4445555554
No 162
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.55 E-value=6.7e+02 Score=24.13 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH
Q 005674 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQ 387 (684)
Q Consensus 357 El~aEI~~LekqrdeLEAeLKkVN~sL~aA~ 387 (684)
++-.|+..++.+..+++.++.+.+......+
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444444444444444443333
No 163
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.51 E-value=7.4e+02 Score=24.65 Aligned_cols=156 Identities=18% Similarity=0.228 Sum_probs=94.0
Q ss_pred hhhhhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH--
Q 005674 307 QKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLA-- 384 (684)
Q Consensus 307 qkVDKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~-- 384 (684)
+.-+++..|.+.| +.+.|.=.||..+|+-=..++.-=..--+..+..|.+|+.-++.+=.--|.+.+.++.....+.
T Consensus 18 e~~eyi~~L~~~l-~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~ 96 (200)
T cd07624 18 KMNEYLTLFGEKL-GTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLLSDHEFV 96 (200)
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555 4555666677766654444443333444456666777777776665444444444444433332
Q ss_pred ---------HHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhchhhhHHHhHHHHHHh
Q 005674 385 ---------AAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEK 455 (684)
Q Consensus 385 ---------aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLEdTW~LQss~~e~kek 455 (684)
.-..-++.+=-.|+|+--.-..-.+.|..|..+|.+.|..|.-+...++.
T Consensus 97 f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~--------------------- 155 (200)
T cd07624 97 FLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANA--------------------- 155 (200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 23344666777888877777777788888888877777766555444333
Q ss_pred hhhHHHHh--------hHHHHHHHHHHHHHHHHHhhc
Q 005674 456 QVSEELVK--------HEDYFVNLAISLLSAYKKELG 484 (684)
Q Consensus 456 q~~dELer--------~~d~Fv~La~~~Ls~~keeL~ 484 (684)
.+..|++| ..+-|.++|..|+.+|++.+.
T Consensus 156 ~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~ 192 (200)
T cd07624 156 DLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLA 192 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333 457899999999999988654
No 164
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.43 E-value=8.3e+02 Score=25.17 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=59.9
Q ss_pred HHHHHhhchhhhHHHhHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhcccCCCccCCCCCC
Q 005674 433 STWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEGSENASSGDD 512 (684)
Q Consensus 433 ~tWInFLEdTW~LQss~~e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk~l~~~~e~~~~~d~ 512 (684)
++=.+|..+=|.|+.-+. .+. .+..|-.-|.....++..+|+..+... .+ .+...|.+|-. +
T Consensus 37 ~a~~~F~~~L~~f~~~~~--~D~----~i~~~l~kFs~~l~ei~~~~~~Ll~~~-~~--~l~~~L~~F~k---------~ 98 (200)
T cd07639 37 AASRAFVDGLCDLAHHGP--KDP----MMAECLEKFSDGLNHILDSHAELLEAT-QF--SFKQQLQLLVK---------E 98 (200)
T ss_pred HHHHHHHHHHHHHhccCC--CCc----hhHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH---------h
Confidence 334566666666665332 111 255666667777666666666655442 11 23333333331 1
Q ss_pred ccccccCcccchHHHHHhHhHHHHHHHHhhhhhHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHHhcc
Q 005674 513 EHSKELNPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRVKELFDDIEKLRLEFES 580 (684)
Q Consensus 513 e~Sk~~npRk~LEeeYLe~E~Kii~~fSivD~mk~~fy~~q~~~sRkdd~~vkeLf~~IeKlR~efEs 580 (684)
+-.++-.-||..+..--+++.+..- ....+|+-..+|.+.-++++..|..|+.
T Consensus 99 dl~~vKe~kK~FdK~s~~~d~al~K---------------~~~~~k~k~~e~~Ea~~~l~~~R~~F~~ 151 (200)
T cd07639 99 DLRGFRDARKEFERGAESLEAALQH---------------NAETPRRKAQEVEEAAAALLGARATFRD 151 (200)
T ss_pred hhHHHHHHhhhHhhcchhHHHHHHH---------------HhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 1122335567777776676665211 1123345555677777777777776653
No 165
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.42 E-value=9.1e+02 Score=25.67 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=84.6
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHHHHHHhhc
Q 005674 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLE 440 (684)
Q Consensus 361 EI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~tWInFLE 440 (684)
|+..|+..++.-...|+|+-..+.+++.++-+++.+-+-|+.=..++=.++ +++.+-|..=..=-+.+++==- +
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei----~~~r~r~~~~e~kl~~v~~~~e-~- 91 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEI----QEIRERIKRAEEKLSAVKDERE-L- 91 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccccHHH-H-
Confidence 334444444444455666777777777777777777666655444433332 2333332222111122222100 0
Q ss_pred hhhhHHHhHHHH--HHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhcccCCCccCCCCCCcccccc
Q 005674 441 DSWVLQCSQMEL--KEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEGSENASSGDDEHSKEL 518 (684)
Q Consensus 441 dTW~LQss~~e~--kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk~l~~~~e~~~~~d~e~Sk~~ 518 (684)
=.|+.-.... .....+|||.+. .=..++|+.+.+.+.+.|.+++..+..+..
T Consensus 92 --~aL~~E~~~ak~r~~~le~el~~l-----~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~------------------- 145 (239)
T COG1579 92 --RALNIEIQIAKERINSLEDELAEL-----MEEIEKLEKEIEDLKERLERLEKNLAEAEA------------------- 145 (239)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 0111111111 333444444442 224566777777777766666555444332
Q ss_pred CcccchHHHHHhHhHHHHHHHHhhhhhHHHHHhhhcCCCCCCchHHHHHHHHHHHHHHHhccc
Q 005674 519 NPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRVKELFDDIEKLRLEFESI 581 (684)
Q Consensus 519 npRk~LEeeYLe~E~Kii~~fSivD~mk~~fy~~q~~~sRkdd~~vkeLf~~IeKlR~efEsI 581 (684)
.++.+......+....++--+.++. +=||+ ||.-.+.+|..+.+.
T Consensus 146 ----~~e~e~~~i~e~~~~~~~~~~~L~~-----------~l~~e---ll~~yeri~~~~kg~ 190 (239)
T COG1579 146 ----RLEEEVAEIREEGQELSSKREELKE-----------KLDPE---LLSEYERIRKNKKGV 190 (239)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCHH---HHHHHHHHHhcCCCc
Confidence 3555555555555555555555554 66665 566667777777554
No 166
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.84 E-value=3.8e+02 Score=21.95 Aligned_cols=42 Identities=31% Similarity=0.397 Sum_probs=26.9
Q ss_pred HHhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHH
Q 005674 325 KAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLE 373 (684)
Q Consensus 325 KAEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLE 373 (684)
+.++|..-|| .=|-.||..|-..+..+|..+ ..|+...+.|.
T Consensus 5 k~~~rr~rNR---~AAr~~R~RKk~~~~~Le~~~----~~L~~en~~L~ 46 (64)
T PF00170_consen 5 KRERRRERNR---EAARRSRQRKKQYIEELEEKV----EELESENEELK 46 (64)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHH
Confidence 4455666555 568899999999888877643 34444444443
No 167
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=22.61 E-value=3.2e+02 Score=26.75 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005674 354 KEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE 396 (684)
Q Consensus 354 ~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEE 396 (684)
-.|++..+|..+.+=.....+.|++++.+|..-...|++.|.+
T Consensus 40 ~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~ 82 (126)
T PF07028_consen 40 SQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKE 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999988889999999999999999999888875
No 168
>PF06920 Ded_cyto: Dedicator of cytokinesis; InterPro: IPR010703 This family represents a conserved region of approximately 200 residues within a number of eukaryotic dedicator of cytokinesis (DOCK) proteins. These proteins are potential guanine nucleotide exchange factors that activate some small GTPases, such as Rac, by exchanging bound GDP for free GTP []. DOCK proteins are required during several cellular processes, such as cell motility and phagocytosis. For instance, DOCK2 is specifically expressed in haemopoietic cells, and plays a critical role in lymphocyte migration [].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0005525 GTP binding, 0051020 GTPase binding; PDB: 2WMO_A 2WM9_A 2WMN_A 3VHL_A 3B13_A 2YIN_B.
Probab=22.46 E-value=42 Score=32.60 Aligned_cols=54 Identities=24% Similarity=0.373 Sum_probs=30.7
Q ss_pred eecCCCCCCcchhhhhhhhhhhhhhHHHhhccCCChhHHHHH---HHHHhhhccCchhHHHHHHHh
Q 005674 129 YDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLL---LEMFGLCLTGGKEVHHAITSS 191 (684)
Q Consensus 129 yD~d~ggePmnFrdVFL~SqALEgI~lSmIleaP~eEEvsLL---lEiFglCL~GgkevH~aivss 191 (684)
+||-+.|+|+.+.++||-...+ .+-+.+-+..| +.=|--|+.=|-.+|..+++.
T Consensus 100 v~a~VngG~~~y~~~Fl~~~~~---------~~~~~~~~~~L~~~~~~~~~~~~~~L~~h~~~~~~ 156 (178)
T PF06920_consen 100 VDAAVNGGPSKYAEAFLSPEYL---------HPEDKELVEKLKEAFIDQLIVLERALELHKKLCSP 156 (178)
T ss_dssp HS-SSS-TTHHHHHHHSSCHHC---------SHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--G
T ss_pred ccccccCchHHHHHHHcCcccc---------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 4667789999999999987665 22233333333 333334555556667666664
No 169
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.36 E-value=3.1e+02 Score=23.54 Aligned_cols=30 Identities=33% Similarity=0.403 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHH
Q 005674 356 KEIGAEISELVKQRDHLEAELKKVNLSLAA 385 (684)
Q Consensus 356 KEl~aEI~~LekqrdeLEAeLKkVN~sL~a 385 (684)
+.+..+|..|+++...++.+++++...|.+
T Consensus 72 ~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 72 EKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777666666543
No 170
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.16 E-value=1.6e+03 Score=27.91 Aligned_cols=185 Identities=25% Similarity=0.300 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhh-hhhccCCc------------hhhhhhhhhhhHHHHHHHHHHHHHHH-HHHH-----------H-
Q 005674 233 IDAEASDLKKRLEGM-KALQNSSN------------EDLEQASEKTTKATIEALKEALAQIR-VCTR-----------L- 286 (684)
Q Consensus 233 iD~Ea~~L~~kl~~~-~~~~~~~~------------~~~~k~~~~~~~a~~ea~keal~qir-lCSr-----------l- 286 (684)
|-.|...|+++|.+- ..+..+.+ +++..-++.. ...+|++.|.-+| =||+ |
T Consensus 434 Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~---~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~ 510 (762)
T PLN03229 434 LEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAV---IAMGLQERLENLREEFSKANSQDQLMHPVLM 510 (762)
T ss_pred HHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHhcccccccccHHHH
Q ss_pred HHHH-----HhhhhccCCCChhhhhhhhhhHHHHHH--hhhcchHHHh-------hhHhh-----hhhhhHHhhhhhhcc
Q 005674 287 EGLL-----LKKKLLSYGDSPEVHAQKVDKLKVLSE--SLSNSSVKAE-------KRISD-----HRSQKEEALKVRVVK 347 (684)
Q Consensus 287 E~Ll-----LkKksl~~GDS~e~haqkVDKLKvLse--SLanSssKAE-------kRI~d-----~R~QKEeAL~fRv~K 347 (684)
|... ..++--..+|.|++- +|+|.||..+. +|..-.++|+ +||.+ .=.-|=||+.-=|.|
T Consensus 511 eK~~kLk~Efnkkl~ea~n~p~lk-~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~ 589 (762)
T PLN03229 511 EKIEKLKDEFNKRLSRAPNYLSLK-YKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVAS 589 (762)
T ss_pred HHHHHHHHHHHHhhhcccccHHHH-HHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Q ss_pred cc-------------hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH------HHHHHHHHHHHHH-hhHHHHHH
Q 005674 348 AN-------------ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAA------QARLRNAQEEREQ-FDEANDQI 407 (684)
Q Consensus 348 ~n-------------Evs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA------~aRl~n~rEERdQ-FdEA~nqi 407 (684)
.+ +|..+=||+..||...-+--+-=-.+++|++..++.. ..++..+.+|=.| -.+|.|
T Consensus 590 ~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~-- 667 (762)
T PLN03229 590 SGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIR-- 667 (762)
T ss_pred cCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhc--
Q ss_pred HHHhhhchHHHHHHhh
Q 005674 408 VEHLKTKEDELLKSIA 423 (684)
Q Consensus 408 v~hLK~KEdELskSIa 423 (684)
..-||.|-++|-..++
T Consensus 668 ss~LK~k~E~Lk~Eva 683 (762)
T PLN03229 668 SSDLKSKIELLKLEVA 683 (762)
T ss_pred chhHHHHHHHHHHHHH
No 171
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.06 E-value=8.5e+02 Score=30.60 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=24.2
Q ss_pred HhhHHHHHHHHHHHHH---------HHHHhhchhhHHHH
Q 005674 462 VKHEDYFVNLAISLLS---------AYKKELGPSISRIG 491 (684)
Q Consensus 462 er~~d~Fv~La~~~Ls---------~~keeL~psI~rI~ 491 (684)
.+.+.||+.+.-|+|. .|-+.++.||+.|-
T Consensus 398 T~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIv 436 (1102)
T KOG1924|consen 398 TGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIV 436 (1102)
T ss_pred ccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4677899999988885 47778888888884
No 172
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.97 E-value=3.7e+02 Score=28.34 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=69.9
Q ss_pred hhhhhhhHHHhhccCCChhHHHHHHHHHhhhcc--------CchhHHHHHHHhHHHHHHHhhcchhhhccChHHHHHH--
Q 005674 147 SQALEAITVSMILEAPNEEEISLLLEMFGLCLT--------GGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQF-- 216 (684)
Q Consensus 147 SqALEgI~lSmIleaP~eEEvsLLlEiFglCL~--------GgkevH~aivssiqdLA~afs~y~DEVLvKReELLqf-- 216 (684)
++-+...--.+.+|.-.|.++.-=|.-||-|+- +.+.+-..++..|.|.-....+.+. |+-+|+ .+|.
T Consensus 88 ~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~-vlk~R~-~~Q~~l 165 (243)
T cd07666 88 FEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMG-VIKRRD-QIQAEL 165 (243)
T ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHH
Confidence 555555556667788888888888888888876 5666677899999999999999998 888886 3333
Q ss_pred --HHHhhhhccccchhhhhhHHHHHHHHHHhhh
Q 005674 217 --AQTAITGLKMNSDIERIDAEASDLKKRLEGM 247 (684)
Q Consensus 217 --aQ~AIsGLK~nadi~riD~Ea~~L~~kl~~~ 247 (684)
.-.+.... .+|-.++..|+..+..|+++-
T Consensus 166 e~k~e~l~k~--~~dr~~~~~ev~~~e~kve~a 196 (243)
T cd07666 166 DSKVEALANK--KADRDLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHH
Confidence 33334443 466667777777777777765
No 173
>PRK14150 heat shock protein GrpE; Provisional
Probab=21.88 E-value=6e+02 Score=25.81 Aligned_cols=64 Identities=25% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhc
Q 005674 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRN-----AQEEREQFDEANDQIVEHLKTKEDELLKSIAACRV 427 (684)
Q Consensus 361 EI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n-----~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~v 427 (684)
+|.+|+++..+|+++| +..+-.++|-+.| .||--+..+-|...++..|=-=-|.|-+.+.+.+.
T Consensus 42 ~i~~l~~~l~~~~~~~---kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~ 110 (193)
T PRK14150 42 RIAELEAQLAEAQAEE---RDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADK 110 (193)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccc
Confidence 4444554444444432 3344444444433 33444555667777777776667777777765443
No 174
>PF13166 AAA_13: AAA domain
Probab=21.78 E-value=1.3e+03 Score=26.68 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhc
Q 005674 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTK 414 (684)
Q Consensus 357 El~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~K 414 (684)
.+..++..+++....++.++++.+..+..-...+..++.+--.-+.+.+.|=..|+.=
T Consensus 414 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 414 EYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3456667777777777777777777777777777776666666677777776666654
No 175
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.68 E-value=8.9e+02 Score=24.93 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=41.9
Q ss_pred hhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHhhhchHHHH
Q 005674 343 VRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQ---IVEHLKTKEDELL 419 (684)
Q Consensus 343 fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nq---iv~hLK~KEdELs 419 (684)
++.++..+++..-.-.-.||..|.++.|.+-.+-.++...+..+...+..++..-+..-..... =+..|+..-|+.+
T Consensus 37 ~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~ 116 (312)
T PF00038_consen 37 LREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEET 116 (312)
T ss_dssp ---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 4444455555555555566666666666655555555555555544444443322222111111 1334444444444
Q ss_pred HHhhhhhcchhhHHHHHHhhc
Q 005674 420 KSIAACRVESDVLSTWINFLE 440 (684)
Q Consensus 420 kSIasc~vEA~vv~tWInFLE 440 (684)
........+...++.=|+||.
T Consensus 117 ~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 117 LARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHH
Confidence 444444444444444455553
No 176
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.45 E-value=3.1e+02 Score=25.07 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHhhH
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRN----AQEEREQFDE 402 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n----~rEERdQFdE 402 (684)
+|+..+..+.|+|..-|-.+......-++||+. -|+.|.+|-+
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655555555444444444443 4666666644
No 177
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.38 E-value=3.2e+02 Score=28.82 Aligned_cols=123 Identities=21% Similarity=0.231 Sum_probs=61.7
Q ss_pred hhchhhhHHHhHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhhcccCCCccCCCCCCccccc
Q 005674 438 FLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEGSENASSGDDEHSKE 517 (684)
Q Consensus 438 FLEdTW~LQss~~e~kekq~~dELer~~d~Fv~La~~~Ls~~keeL~psI~rI~~~V~nLk~l~~~~e~~~~~d~e~Sk~ 517 (684)
=|-+|=-+=..-.|-=++++.+|++.. |..+.+..|.-.-.|+.|=+.|=.-|..+. +--+.-
T Consensus 25 kLrEteemL~KKqe~Le~ki~~e~e~~-------A~k~~tkNKR~AlqaLkrKK~~E~qL~qid----------G~l~ti 87 (221)
T KOG1656|consen 25 KLRETEEMLEKKQEFLEKKIEQEVENN-------ARKYGTKNKRMALQALKRKKRYEKQLAQID----------GTLSTI 87 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHh----------hHHHHH
Confidence 333443333333344456666666543 444455555555555555555555554422 111111
Q ss_pred cCcccchHHHHHhHhHHHHHHHHhhhhhHHHHHhhhcCCCCCCchHHHHHHHHHHHHH----HHhcccCCCc
Q 005674 518 LNPRKNLEEEYLDYEAKIITTFSVVDNMKEQFYAQRGANSRKDDPRVKELFDDIEKLR----LEFESIERPN 585 (684)
Q Consensus 518 ~npRk~LEeeYLe~E~Kii~~fSivD~mk~~fy~~q~~~sRkdd~~vkeLf~~IeKlR----~efEsIeRP~ 585 (684)
--+|-.||---+ .+-++|+|+..-.+-.....--|-..|-+|.++|..=. +==+.|-+|+
T Consensus 88 e~Qr~alEnA~~--------n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pv 151 (221)
T KOG1656|consen 88 EFQREALENANT--------NTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPV 151 (221)
T ss_pred HHHHHHHHcccc--------cHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 223444443333 33456666655444444444567788888888775432 2235566776
No 178
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=21.38 E-value=6.9e+02 Score=25.99 Aligned_cols=137 Identities=18% Similarity=0.252 Sum_probs=67.8
Q ss_pred HHhhhccCchhHHHHHHHhHHHHHHHhhcchhhhccChHHHHHHHHHhhh--------hcc-ccchhhhhhHHHHHHHHH
Q 005674 173 MFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAIT--------GLK-MNSDIERIDAEASDLKKR 243 (684)
Q Consensus 173 iFglCL~GgkevH~aivssiqdLA~afs~y~DEVLvKReELLqfaQ~AIs--------GLK-~nadi~riD~Ea~~L~~k 243 (684)
-+|-||+.=-++|..|-+.++...++|- +|+++-=+.=+.-=.-.|+ ..| ..++|-+-..+...|++|
T Consensus 65 ~lG~~L~~i~~~~r~ie~~l~~~~~~~~---~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KK 141 (223)
T cd07605 65 ELGEALKQIVDTHKSIEASLEQVAKAFH---GELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKK 141 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777899999999888877763 2332211110110001111 111 234555666666666666
Q ss_pred HhhhhhhccCCchhhhhhhhhh-------hHHHHHHHHHHHHH--HHHHHHHHHHHH-hhhhcc-CCCChhhhhhhhhhH
Q 005674 244 LEGMKALQNSSNEDLEQASEKT-------TKATIEALKEALAQ--IRVCTRLEGLLL-KKKLLS-YGDSPEVHAQKVDKL 312 (684)
Q Consensus 244 l~~~~~~~~~~~~~~~k~~~~~-------~~a~~ea~keal~q--irlCSrlE~LlL-kKksl~-~GDS~e~haqkVDKL 312 (684)
-.+. .......+..+ .-+.. ..-...++++||-+ -|.|.-++.+-. -+..++ +++.-....++++.+
T Consensus 142 s~~~-~~~k~~~~l~~-~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w 219 (223)
T cd07605 142 SQKS-GTGKYQEKLDQ-ALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLW 219 (223)
T ss_pred Hccc-CCCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4332 00000011100 00000 00135689999988 678988876532 222333 455666666666655
Q ss_pred HH
Q 005674 313 KV 314 (684)
Q Consensus 313 Kv 314 (684)
+.
T Consensus 220 ~~ 221 (223)
T cd07605 220 QE 221 (223)
T ss_pred hh
Confidence 43
No 179
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.37 E-value=2.8e+02 Score=23.16 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=16.8
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 005674 365 LVKQRDHLEAELKKVNLSLAAAQARLRN 392 (684)
Q Consensus 365 LekqrdeLEAeLKkVN~sL~aA~aRl~n 392 (684)
+++.+.-|+.+|.+++..+.....+|.|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555666666666666666666654
No 180
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=21.31 E-value=4.5e+02 Score=29.00 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=49.9
Q ss_pred HHHHHhHHHHHHHhhcchhhhccCh---HHHH--HH---HH--Hhhhhccccchh-----hhhhHHHHHHHHHHhhhh-h
Q 005674 186 HAITSSIQDLATAISKYQDEVLVKR---EELL--QF---AQ--TAITGLKMNSDI-----ERIDAEASDLKKRLEGMK-A 249 (684)
Q Consensus 186 ~aivssiqdLA~afs~y~DEVLvKR---eELL--qf---aQ--~AIsGLK~nadi-----~riD~Ea~~L~~kl~~~~-~ 249 (684)
+..+++||.|...|+.--+ +-.-. |.|| .| ++ +...|.+...++ ..++.|+..|+.+|.++- .
T Consensus 166 ~~~~~~i~nll~~f~~ipe-~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~ 244 (307)
T PF15112_consen 166 RDFQMKIQNLLNEFRNIPE-IVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQ 244 (307)
T ss_pred HHHHHHHHHHHHHhccChH-HHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888777766544 21112 2333 12 22 455688877777 467889999999999883 3
Q ss_pred hccCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 005674 250 LQNSSNEDLEQASEKTTKATIEALKEALAQ 279 (684)
Q Consensus 250 ~~~~~~~~~~k~~~~~~~a~~ea~keal~q 279 (684)
...+.... +.+. -.++++++.|..
T Consensus 245 ~e~~~~~~-----ee~~-~~l~~~~~fL~~ 268 (307)
T PF15112_consen 245 AEEQEVLP-----EEDS-KRLEVLKEFLRN 268 (307)
T ss_pred Hhhccccc-----hhhh-HHHHHHHHHHHh
Confidence 22222111 1111 257777777764
No 181
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.28 E-value=4.6e+02 Score=30.41 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=34.0
Q ss_pred hhHHHHHHhhhcchHHHhhhHhhhhhhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH
Q 005674 310 DKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAA 385 (684)
Q Consensus 310 DKLKvLseSLanSssKAEkRI~d~R~QKEeAL~fRv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~a 385 (684)
|-|+-|.-.+-.--.+-.+=+.+|+.+|+|=-..|-+-.+--.++...|..|=.+|++++++|..++.+....|..
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333333444445555555443333333333334444445455555555555555444444444333
No 182
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=21.20 E-value=1.8e+03 Score=28.15 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=72.0
Q ss_pred cCCCCCCcchhhhhhhhhhh-hhhHHHhhccCCC--h------hHHHHHHHHHhhhccCchhHHHHHHHhHHHHHHHhhc
Q 005674 131 ADFGGEPLNFRDVFLQSQAL-EAITVSMILEAPN--E------EEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISK 201 (684)
Q Consensus 131 ~d~ggePmnFrdVFL~SqAL-EgI~lSmIleaP~--e------EEvsLLlEiFglCL~GgkevH~aivssiqdLA~afs~ 201 (684)
|+...+||||-|.=--..|. .+..+..+-+-|. + ....+..+ ..+--+++|+....+
T Consensus 286 p~se~~~~n~~~~s~~~pa~~~~~~~~~~~~~~~~~~~~~sqkd~~~~~~~--------------~~~~e~~~~~~~l~~ 351 (980)
T KOG0980|consen 286 PVSEDEEMNLPDTSASTPAGHDPEPLDLFEAEPASDPPNASQKDPRELQIE--------------QLSREVAQLKAQLEN 351 (980)
T ss_pred CCCCccccccccccccccccCCCCCccccccCcccCCcccccCChhhHHHH--------------HHHHHHHHHhhhhhh
Confidence 34455889999987777776 3333333333332 1 12222221 122333444444443
Q ss_pred chhhhccChHHHHHH------HHHhhhhccccchhhhhhHHHHHHHHHHhhhhhhccCCchhhhhhhh--hhhHH---HH
Q 005674 202 YQDEVLVKREELLQF------AQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASE--KTTKA---TI 270 (684)
Q Consensus 202 y~DEVLvKReELLqf------aQ~AIsGLK~nadi~riD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~--~~~~a---~~ 270 (684)
-.. --|.=+.|| -+++.---++-++=+|.|.| +|+..+.+..+.+.+-.+-+....+ ...-+ -.
T Consensus 352 ~~~---ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e--qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry 426 (980)
T KOG0980|consen 352 LKE---EARRRIEQYENQLLALEGELQEQQREAQENREEQE--QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRY 426 (980)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333 345555555 34444445667777888888 8999999888888766655533222 22112 26
Q ss_pred HHHHHHHHHHH
Q 005674 271 EALKEALAQIR 281 (684)
Q Consensus 271 ea~keal~qir 281 (684)
+.+|++..+.|
T Consensus 427 ~klkek~t~l~ 437 (980)
T KOG0980|consen 427 EKLKEKYTELR 437 (980)
T ss_pred HHHHHHHHHHH
Confidence 67777777643
No 183
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.19 E-value=5.9e+02 Score=30.71 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchhhHH
Q 005674 354 KEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLS 433 (684)
Q Consensus 354 ~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~vv~ 433 (684)
+-+.|..||+.|+...++|.+++-++...|..++.+.+ ++.--+-=+.++.-.-+.|-+.+.--+-+.+-+.
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--------~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVR--------DKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457788888888888888888888888777776654 2222223344444555556666666666666677
Q ss_pred HHHHhhchhhhHHHh
Q 005674 434 TWINFLEDSWVLQCS 448 (684)
Q Consensus 434 tWInFLEdTW~LQss 448 (684)
.=++.|..-|.|-.+
T Consensus 502 ~~l~~l~k~~~lE~s 516 (652)
T COG2433 502 RKLAELRKMRKLELS 516 (652)
T ss_pred HHHHHHHHHHhhhhc
Confidence 777777777776544
No 184
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=21.16 E-value=5.5e+02 Score=25.54 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=37.5
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 005674 344 RVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA 393 (684)
Q Consensus 344 Rv~K~nEvs~~EKEl~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~ 393 (684)
|=....+..+.|-.+-.|..+|..|-+.|+++-+++...+.........+
T Consensus 73 r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rl 122 (158)
T PF09744_consen 73 RKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRL 122 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 44445677788888999999999999999999999886665544443333
No 185
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.13 E-value=2.4e+02 Score=33.02 Aligned_cols=63 Identities=25% Similarity=0.446 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhhcchh
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESD 430 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~vEA~ 430 (684)
.||..|..++|+|-+|+.|--|+... ....--||.|.+-- ++..+.|-|+|.|++-+...||.
T Consensus 344 eei~~L~~~~d~L~~q~~kq~Is~e~----fe~mn~Ere~L~re----L~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 344 EEIKALQSNIDELHKQLRKQGISTEQ----FELMNQEREKLTRE----LDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred HHHHHHHhhHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHH----HHHhcchHHHHHHHHHhHHHHHH
Confidence 58899999999999999987776432 33444566665543 45668889999999988888764
No 186
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=21.10 E-value=7.8e+02 Score=24.00 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchHHHHHHhhhhh---cchhhHHHH
Q 005674 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR---VESDVLSTW 435 (684)
Q Consensus 359 ~aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEdELskSIasc~---vEA~vv~tW 435 (684)
...+..+...-|.+..++..++..|+.-........+.=..|.++.++++.. +++-.+++.+|.+.= -+-+.+..=
T Consensus 6 ~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~e-q~~L~~~ae~I~~~L~yF~~Ld~itr~ 84 (157)
T PF04136_consen 6 LDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEE-QTRLEELAEEISEKLQYFEELDPITRR 84 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHhhHHHHHHH
Confidence 4556667777788888888888888888888888888889999999988865 445556666665431 222222222
Q ss_pred HHhhchhh--hHHHhHHHHHHhhhhHHHHhhHHHHHH-----HHHHHHHHHHHhhchhhHHHHHHHHh
Q 005674 436 INFLEDSW--VLQCSQMELKEKQVSEELVKHEDYFVN-----LAISLLSAYKKELGPSISRIGKFVEN 496 (684)
Q Consensus 436 InFLEdTW--~LQss~~e~kekq~~dELer~~d~Fv~-----La~~~Ls~~keeL~psI~rI~~~V~n 496 (684)
+| .+. +-..+| +.+-..|+.|-+++-. =+-.-+.-|+--+.-++.-|+.||-|
T Consensus 85 Ln---~p~~sV~~~~F-----~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~ 144 (157)
T PF04136_consen 85 LN---SPGSSVNSDSF-----KPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVN 144 (157)
T ss_pred Hc---CCCCcccchHH-----HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 110 111112 2234455666554432 12223455666666777777776655
No 187
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.00 E-value=3.6e+02 Score=29.22 Aligned_cols=53 Identities=21% Similarity=0.392 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhchH
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKED 416 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hLK~KEd 416 (684)
.|+..++....+.|++++.+...+...++||.++..+|-.- +..|..++.|.+
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l----~k~~~~~~sKV~ 259 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRL----SKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34444455556678899999999999999999999988643 344555555554
No 188
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.89 E-value=3.1e+02 Score=24.61 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=25.9
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005674 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ 394 (684)
Q Consensus 361 EI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~r 394 (684)
++-.+.+.+|.|..+++++|..++-...-..++.
T Consensus 46 kyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 46 KYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5667888999999999999999876554444433
No 189
>PRK14140 heat shock protein GrpE; Provisional
Probab=20.70 E-value=8.8e+02 Score=24.86 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 005674 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ 394 (684)
Q Consensus 360 aEI~~LekqrdeLEAeLKkVN~sL~aA~aRl~n~r 394 (684)
.+|.+|+.+.++|+++++.....+..+.|-+.|.|
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~r 71 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYK 71 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666554
No 190
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.60 E-value=2.1e+03 Score=28.75 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=45.4
Q ss_pred HhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHhhhchHHHHHHhhhhhcchhhHH
Q 005674 367 KQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEA---NDQIVEHLKTKEDELLKSIAACRVESDVLS 433 (684)
Q Consensus 367 kqrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA---~nqiv~hLK~KEdELskSIasc~vEA~vv~ 433 (684)
+--.+-+.-++..+..+-.|+-.|.+++|+-.--++. .+|-|..|-++.++|-.-++-=-.||.-+.
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~ 1646 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAE 1646 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3334444557777788888888888888776555443 356677888888888777776666665443
No 191
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.40 E-value=6.1e+02 Score=29.33 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=21.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhcccC
Q 005674 556 NSRKDDPRVKELFDDIEKLRLEFESIE 582 (684)
Q Consensus 556 ~sRkdd~~vkeLf~~IeKlR~efEsIe 582 (684)
-++|=|+-..-.++-|..+..+.+...
T Consensus 363 ~~tkfD~amvafLd~L~qf~~e~~~k~ 389 (447)
T KOG2751|consen 363 WSTKFDKAMVAFLDCLKQFADELEKKD 389 (447)
T ss_pred eccccCHHHHHHHHHHHHHHHHHHhcC
Confidence 467778888888888888888877653
No 192
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.15 E-value=1.6e+03 Score=27.41 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHH-------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 005674 356 KEIGAEISELVK-------QRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHL 411 (684)
Q Consensus 356 KEl~aEI~~Lek-------qrdeLEAeLKkVN~sL~aA~aRl~n~rEERdQFdEA~nqiv~hL 411 (684)
..|...+..+++ +...||++|+.+...-.-+++.|..+++|=-.|-|--.|+--|+
T Consensus 401 q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 401 QNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666 78889999998888888888888888888888888777766554
No 193
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=20.10 E-value=5.6e+02 Score=29.31 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=21.2
Q ss_pred cchhhHHHHHHhhchhhhHHHhHHHHHHhh
Q 005674 427 VESDVLSTWINFLEDSWVLQCSQMELKEKQ 456 (684)
Q Consensus 427 vEA~vv~tWInFLEdTW~LQss~~e~kekq 456 (684)
-++.++.+-+-+|+|+=.++..+..+...+
T Consensus 311 ~~a~If~ah~~lL~D~~l~~~v~~~I~~~~ 340 (473)
T PRK11377 311 DIAAIFSGHHTLLDDPELLAAASERLQHEH 340 (473)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 456778888888888777777776665544
Done!