Query 005675
Match_columns 684
No_of_seqs 344 out of 846
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.3E-28 4.6E-33 228.7 13.7 114 115-228 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 3.4E-17 1.2E-21 155.1 11.1 99 118-226 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 3.9E-14 1.3E-18 126.1 9.8 95 119-224 7-101 (104)
4 1wmh_B Partitioning defective- 95.3 0.071 2.4E-06 46.5 8.7 73 578-657 6-84 (86)
5 1vd2_A Protein kinase C, IOTA 95.1 0.053 1.8E-06 47.6 7.4 59 578-642 6-64 (89)
6 1na6_A Ecorii, restriction end 94.2 0.07 2.4E-06 57.9 7.0 93 119-212 17-123 (404)
7 1q1o_A Cell division control p 90.7 0.68 2.3E-05 41.3 7.4 74 578-651 5-85 (98)
8 2kkc_A Sequestosome-1; P62, PB 90.4 0.43 1.5E-05 42.8 6.0 64 578-647 5-83 (102)
9 2ktr_A Sequestosome-1; autopha 86.1 1.5 5.1E-05 40.3 6.7 64 576-647 18-98 (117)
10 1oey_A P67-PHOX, neutrophil cy 85.1 3.7 0.00012 35.5 8.3 70 580-657 7-79 (83)
11 2bkf_A Zinc-finger protein NBR 77.5 6 0.00021 34.6 6.9 65 580-651 8-73 (87)
12 1pqs_A Cell division control p 74.8 4 0.00014 34.7 5.0 58 593-651 5-64 (77)
13 1wj6_A KIAA0049 protein, RSGI 74.6 7.3 0.00025 34.9 6.8 59 580-647 16-74 (101)
14 1oey_J P40-PHOX, neutrophil cy 69.5 4.5 0.00015 36.4 4.3 51 595-654 28-78 (107)
15 3cgm_A SLYD, peptidyl-prolyl C 58.8 24 0.00083 33.2 7.5 98 201-314 3-110 (158)
16 3p8d_A Medulloblastoma antigen 46.4 31 0.0011 28.7 5.2 55 281-352 3-57 (67)
17 2kfw_A FKBP-type peptidyl-prol 39.7 30 0.001 33.8 5.0 100 201-314 3-114 (196)
18 1e8p_A Endoglucanase, dockerin 36.8 9.4 0.00032 29.7 0.6 14 625-638 19-32 (46)
19 2kr7_A FKBP-type peptidyl-prol 36.5 1.1E+02 0.0036 28.4 7.9 103 198-314 4-119 (151)
20 3o27_A Putative uncharacterize 36.4 32 0.0011 28.7 3.7 35 193-227 31-66 (68)
21 3qii_A PHD finger protein 20; 35.9 50 0.0017 28.7 5.1 55 282-353 19-73 (85)
22 1mhn_A SurviVal motor neuron p 35.2 37 0.0013 26.7 3.9 42 283-335 2-43 (59)
23 2k8i_A SLYD, peptidyl-prolyl C 34.8 1E+02 0.0034 29.4 7.6 100 201-314 3-114 (171)
24 3s6w_A Tudor domain-containing 32.2 39 0.0013 25.9 3.5 41 284-335 1-41 (54)
25 4a4f_A SurviVal of motor neuro 31.3 45 0.0015 26.7 3.9 43 282-335 6-48 (64)
26 2equ_A PHD finger protein 20-l 27.8 51 0.0017 27.6 3.7 40 282-334 7-46 (74)
27 1g5v_A SurviVal motor neuron p 25.3 64 0.0022 27.8 4.0 43 282-335 8-50 (88)
28 2e63_A KIAA1787 protein; struc 23.4 51 0.0017 31.6 3.3 24 199-222 116-139 (170)
29 4dt4_A FKBP-type 16 kDa peptid 23.1 2E+02 0.0068 27.4 7.4 103 200-314 24-138 (169)
30 2jng_A Cullin-7, CUL-7; P53 bi 22.5 81 0.0028 28.4 4.1 69 273-353 10-78 (105)
31 3pr9_A FKBP-type peptidyl-prol 20.4 4.4E+02 0.015 24.5 9.1 59 246-314 57-123 (157)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=1.3e-28 Score=228.68 Aligned_cols=114 Identities=30% Similarity=0.464 Sum_probs=104.5
Q ss_pred CCCCcceEEEEecccccCCCCCceeEecccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCcceeecccchh
Q 005675 115 SPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWST 194 (684)
Q Consensus 115 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~~rg~prr~lLTtGWs~ 194 (684)
..++..++|+|+||+|||+++++|+||+++|+.|||.++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 34567789999999999999999999999999999999987677889999999999999999999999999999999999
Q ss_pred hhcccCCCCCCEEEEEecCC--CcEEEEEEEccccC
Q 005675 195 FVTSKRLVAGDTFVFLRGEN--GELHVGVRCLARQQ 228 (684)
Q Consensus 195 FV~~K~L~aGD~VvF~R~~~--G~l~VgIRRa~~~~ 228 (684)
||++|+|++||+|+|++.++ +.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999754 57999999998765
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.70 E-value=3.4e-17 Score=155.13 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=86.7
Q ss_pred CcceEEEEecccccCCCCCceeEecccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCcceeecccchhhhc
Q 005675 118 PKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVT 197 (684)
Q Consensus 118 ~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~~rg~prr~lLTtGWs~FV~ 197 (684)
+..++|.|+||+||+.++..|.||+++++.+||..+ +.+.++|. |+.|.|+|+|++. ++.|++||..||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHH
Confidence 356899999999999887789999999999999753 36778887 6999999999974 6899999999999
Q ss_pred ccCCCCCCEEEEEecCCC--cEEEEEEEccc
Q 005675 198 SKRLVAGDTFVFLRGENG--ELHVGVRCLAR 226 (684)
Q Consensus 198 ~K~L~aGD~VvF~R~~~G--~l~VgIRRa~~ 226 (684)
+++|++||.|+|...++. .+.|.|.|+..
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 999999999999997665 58999999764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.51 E-value=3.9e-14 Score=126.15 Aligned_cols=95 Identities=20% Similarity=0.324 Sum_probs=82.3
Q ss_pred cceEEEEecccccCCCCCceeEecccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCcceeecccchhhhcc
Q 005675 119 KVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTS 198 (684)
Q Consensus 119 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~~rg~prr~lLTtGWs~FV~~ 198 (684)
..+.|.|+|+++|.. .++.||+++++.+.+.+. ..+.++|..|++|++++.+++ ++..|+.||..||++
T Consensus 7 ~~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHHT--TCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCcc--ceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHH
Confidence 346899999999943 489999999988665442 368889999999999999873 568999999999999
Q ss_pred cCCCCCCEEEEEecCCCcEEEEEEEc
Q 005675 199 KRLVAGDTFVFLRGENGELHVGVRCL 224 (684)
Q Consensus 199 K~L~aGD~VvF~R~~~G~l~VgIRRa 224 (684)
++|++||.|+|...++..+.|-|-|.
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECS
T ss_pred cCCCCCCEEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999999874
No 4
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.33 E-value=0.071 Score=46.55 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=55.4
Q ss_pred cceeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceeEEEecCCCCeEEccCCChHHHH---hcce--
Q 005675 578 RSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFC---NMVK-- 652 (684)
Q Consensus 578 ~~~vKV~m~G~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~---~~vk-- 652 (684)
.--||...+++--==++|-+...+|++|+..|+++|.+. .-.+.+.|+|.+||++-+-++ ++|. .++|
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----~~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~a~pl 78 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----GLDVLLGYTDAHGDLLPLTND--DSLHRALASGPPP 78 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----TCCCEEEEECTTSCEEECCSH--HHHHHHTTSSSSC
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----CCCEEEEEECCCCCEeeecCH--HHHHHHHHhCCCc
Confidence 345788888864333677677889999999999999853 335799999999999998877 6664 5555
Q ss_pred -eEEEe
Q 005675 653 -RIFIC 657 (684)
Q Consensus 653 -ri~I~ 657 (684)
||+|-
T Consensus 79 LRl~Iq 84 (86)
T 1wmh_B 79 LRLLVQ 84 (86)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 66653
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.14 E-value=0.053 Score=47.55 Aligned_cols=59 Identities=19% Similarity=0.373 Sum_probs=46.1
Q ss_pred cceeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceeEEEecCCCCeEEccCC
Q 005675 578 RSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 642 (684)
Q Consensus 578 ~~~vKV~m~G~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 642 (684)
..-||++.+|.-+-=.|+. --+|++|.++|.++|.+.. ...+++.|.|.|||+.-+-.+
T Consensus 6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~----~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN----EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS----SCCEEEEECCSSSCCEECCSH
T ss_pred eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC----CCeEEEEEECCCCCcccccCH
Confidence 4578999999754334554 5699999999999999752 455799999999998776554
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.16 E-value=0.07 Score=57.86 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=67.2
Q ss_pred cceEEEEecccccCCCCC----ceeEecccccccCCCCCC-CCCCCceEEEEE--eCCCCeEEEEEEEeC------CCcc
Q 005675 119 KVHSFSKVLTASDTSTHG----GFSVLRKHATECLPPLDM-NQSTPTQELVAK--DLHGYEWRFKHIFRG------QPRR 185 (684)
Q Consensus 119 ~~~~F~K~LT~SDv~~~g----rfsVPk~~Ae~~FP~Ld~-~~~~p~q~L~~~--D~~G~~W~Fr~~~rg------~prr 185 (684)
....|+|.|++.|++..| +|.+|+..+..+||.|+. ....+.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 457899999999998874 799999888999999984 344566655543 443455599999997 3446
Q ss_pred eeecccch-hhhcccCCCCCCEEEEEec
Q 005675 186 HLLTTGWS-TFVTSKRLVAGDTFVFLRG 212 (684)
Q Consensus 186 ~lLTtGWs-~FV~~K~L~aGD~VvF~R~ 212 (684)
|.||. |. .+.-.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 88873 32 3445577789999888743
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=90.67 E-value=0.68 Score=41.31 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=53.1
Q ss_pred cceeEEEecCce----ee--eeecCCCCCChHHHHHHHHHHhhcccccCCCCceeEEEecCCCCeEEccC-CChHHHHhc
Q 005675 578 RSRTKVQMQGVA----VG--RALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD-DPWHEFCNM 650 (684)
Q Consensus 578 ~~~vKV~m~G~~----vG--R~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~ 650 (684)
.--|||+-++.. ++ |.|=...--+|++|+.++.+=|.+...-.-.....+-|+|.|||+..+++ +=|++-+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 357888887431 23 67777788899999999999999861111023468999999999977665 567776666
Q ss_pred c
Q 005675 651 V 651 (684)
Q Consensus 651 v 651 (684)
+
T Consensus 85 ~ 85 (98)
T 1q1o_A 85 L 85 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=90.43 E-value=0.43 Score=42.78 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=46.1
Q ss_pred cceeEEEecCc----eeeeeecCCC-----------CCChHHHHHHHHHHhhcccccCCCCceeEEEecCCCCeEEccCC
Q 005675 578 RSRTKVQMQGV----AVGRALDLTT-----------LVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDD 642 (684)
Q Consensus 578 ~~~vKV~m~G~----~vGR~vDL~~-----------~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 642 (684)
..-||++..|. .-=|++-|.. ..+|++|...+.++|.--. ..++.+.|.|.|||+.-+.++
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~----~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR----PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----SSCEEEEEECTTCCEEEECSH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC----CCcEEEEEECCCCCEEEecCH
Confidence 45789999752 2335554432 2489999999999996221 345899999999999988877
Q ss_pred ChHHH
Q 005675 643 PWHEF 647 (684)
Q Consensus 643 PW~~F 647 (684)
+++
T Consensus 81 --eEL 83 (102)
T 2kkc_A 81 --EEL 83 (102)
T ss_dssp --HHH
T ss_pred --HHH
Confidence 555
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=86.12 E-value=1.5 Score=40.27 Aligned_cols=64 Identities=16% Similarity=0.344 Sum_probs=46.2
Q ss_pred CCcceeEEEecC-----ceeeeeecCC-----------CCCChHHHHHHHHHHhh-cccccCCCCceeEEEecCCCCeEE
Q 005675 576 SNRSRTKVQMQG-----VAVGRALDLT-----------TLVGYDHLIDELEEMFD-IKGQLHTRTKWEIVYTDDEGDMML 638 (684)
Q Consensus 576 s~~~~vKV~m~G-----~~vGR~vDL~-----------~~~sY~eL~~~L~~MF~-~~g~l~~~~~~~v~Y~D~eGD~ml 638 (684)
+...-||++..| ..| |++=|. ...+|++|...+.++|. +.+ .++.+.|.|.|||+.-
T Consensus 18 ~~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~-----~~f~l~YkDEdGDlIt 91 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRP-----GGFQAHYRAERGDLVA 91 (117)
T ss_dssp --CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS-----SCEEEEEECTTCCEEE
T ss_pred cccEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccccCC-----CcEEEEEECCCCCEEE
Confidence 345789999974 223 554443 24699999999999994 432 3589999999999988
Q ss_pred ccCCChHHH
Q 005675 639 VGDDPWHEF 647 (684)
Q Consensus 639 vGD~PW~~F 647 (684)
+-.+ +++
T Consensus 92 ISsD--eEL 98 (117)
T 2ktr_A 92 FSSD--EEL 98 (117)
T ss_dssp ECSH--HHH
T ss_pred ecCH--HHH
Confidence 8776 554
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.11 E-value=3.7 Score=35.53 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=56.6
Q ss_pred eeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceeEEEec-CCCCeEEccCCChHHHHhcce--eEEE
Q 005675 580 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTD-DEGDMMLVGDDPWHEFCNMVK--RIFI 656 (684)
Q Consensus 580 ~vKV~m~G~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--ri~I 656 (684)
-|||+-+ .--.|....=-+|.+|...|.+=+.+.++- -++-|.| .+|.+++.+|.=++.-..-|+ ||++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~-----~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH-----TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG-----CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce-----eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence 4788877 567788888889999999999999886432 2688999 688888999999998887755 6776
Q ss_pred e
Q 005675 657 C 657 (684)
Q Consensus 657 ~ 657 (684)
+
T Consensus 79 ~ 79 (83)
T 1oey_A 79 W 79 (83)
T ss_dssp E
T ss_pred E
Confidence 5
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=77.46 E-value=6 Score=34.57 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=45.9
Q ss_pred eeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceeEEEecCCCCeEEccC-CChHHHHhcc
Q 005675 580 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGD-DPWHEFCNMV 651 (684)
Q Consensus 580 ~vKV~m~G~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~v 651 (684)
-.||.-.|...-=-|.-..--++++|...+..+|++.. ++|.|.|.|||-.-|-- .=+++=++++
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~-------~~ikY~DEenD~v~i~Sq~E~eEAlkva 73 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------IQIKYLDEENEEVSINSQGEYEEALKMA 73 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS-------EEEEEECTTSCEEEECSHHHHHHHHHHH
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc-------eEEEEEcCCCCEEEEecHHHHHHHHHHh
Confidence 46889999753323533336789999999999999963 59999999999876643 3333434433
No 12
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=74.80 E-value=4 Score=34.74 Aligned_cols=58 Identities=22% Similarity=0.466 Sum_probs=41.7
Q ss_pred eecCCCCCChHHHHHHHHHHhhcccccCC-CCceeEEEecCCCCeEEcc-CCChHHHHhcc
Q 005675 593 ALDLTTLVGYDHLIDELEEMFDIKGQLHT-RTKWEIVYTDDEGDMMLVG-DDPWHEFCNMV 651 (684)
Q Consensus 593 ~vDL~~~~sY~eL~~~L~~MF~~~g~l~~-~~~~~v~Y~D~eGD~mlvG-D~PW~~F~~~v 651 (684)
.|=...--+|++|+.++.+=|.+. .... .....+-|+|.|||+...+ |+=|++-+.++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~-~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT-HNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT-TSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHccc-ccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 334445568999999999999975 1111 3456899999999987665 55677777765
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=74.55 E-value=7.3 Score=34.90 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=45.4
Q ss_pred eeEEEecCceeeeeecCCCCCChHHHHHHHHHHhhcccccCCCCceeEEEecCCCCeEEccCCChHHH
Q 005675 580 RTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEF 647 (684)
Q Consensus 580 ~vKV~m~G~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F 647 (684)
-.||.-.|...==-|.-..--++++|...+..+|++.. ++|.|.|.|||-.-| .-+.+|
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~-------~~IkY~DEenD~V~i--~Sq~E~ 74 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------IQIKYLDEENEEVSI--NSQGEY 74 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS-------BCCEEECTTSCEECC--CSHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc-------eEEEEecCCCCEEEE--ecHHHH
Confidence 47999999754334644446789999999999999963 589999999999877 334555
No 14
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=69.47 E-value=4.5 Score=36.42 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=39.0
Q ss_pred cCCCCCChHHHHHHHHHHhhcccccCCCCceeEEEecCCCCeEEccCCChHHHHhcceeE
Q 005675 595 DLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRI 654 (684)
Q Consensus 595 DL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~vkri 654 (684)
||+.--.|++|+....+-|.-+ +-.+-|+|.|||+.-+=|+ ++--=|+++-
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~-------DIaLNYrD~eGDLIrildd--eDv~lmi~~s 78 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE-------DIALNYRDAEGDLVRLLSD--EDVALMVRQA 78 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS-------SEEEEEECTTSCEEECCSH--HHHHHHHHHC
T ss_pred ccccCCCHHHHHHHHHHHhccc-------ceeeeeecCCCCEEEEcch--HHHHHHHHHh
Confidence 7888899999999999999843 3478899999999777665 4444444443
No 15
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=58.77 E-value=24 Score=33.25 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=62.1
Q ss_pred CCCCCEEEEE-ec-CCCcEEEEEEEccccCCCCCCccccCCcccchhHHHHHHHHHcCCeeEEEEecCC------C--cc
Q 005675 201 LVAGDTFVFL-RG-ENGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRT------S--QF 270 (684)
Q Consensus 201 L~aGD~VvF~-R~-~~G~l~VgIRRa~~~~~~~p~sv~~~~sm~~gvla~A~~a~~~~~~F~V~Y~Pr~------s--eF 270 (684)
.+.||.|.+. .. .+|+.+-.-+ .... +....+-.| +.+|..-...|..++|.--|.. . -+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f~-------~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSYL-------HGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEEE-------TTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEEE-------ECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5678888773 22 5777655433 1111 111122223 4666667778888998876643 1 67
Q ss_pred eeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 005675 271 IISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 314 (684)
Q Consensus 271 vV~~~~y~~A~~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~ 314 (684)
.|+++.+... ..|.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 8888887532 589999999854 4442 568899999986
No 16
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=46.41 E-value=31 Score=28.66 Aligned_cols=55 Identities=13% Similarity=0.284 Sum_probs=39.6
Q ss_pred HcCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCcceEEEeecCCCCCCCCCccccCcccccc
Q 005675 281 VNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFV 352 (684)
Q Consensus 281 ~~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 352 (684)
|-..|.+|+++-.++ +|- ++|-++|.+|.. + ....|..++.. .+.|..=+|.|+.
T Consensus 3 ~~~~~~vGd~vmArW-~D~---~yYpA~I~si~~-------~--~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDC---RFYPAKVTAVNK-------D--GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-TTS---CEEEEEEEEECT-------T--SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-CCC---CEeeEEEEEECC-------C--CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 556899999999999 333 899999999974 2 56899999933 4455555555543
No 17
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=39.67 E-value=30 Score=33.83 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=61.3
Q ss_pred CCCCCEEEE-Ee--cCCCcEEEEEEEccccCCCCCCccc-cCCcccchhHHHHHHHHHcCCeeEEEEecCC------C--
Q 005675 201 LVAGDTFVF-LR--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT------S-- 268 (684)
Q Consensus 201 L~aGD~VvF-~R--~~~G~l~VgIRRa~~~~~~~p~sv~-~~~sm~~gvla~A~~a~~~~~~F~V~Y~Pr~------s-- 268 (684)
.+.||.|.+ |. ..+|+.+-.-+. ..|...+ ....+-.| +.+|..-...|..++|..-|.. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568899877 33 357766543321 1233322 12222223 4666666778888998876643 1
Q ss_pred cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 005675 269 QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 314 (684)
Q Consensus 269 eFvV~~~~y~~A~~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~ 314 (684)
-+.|+++.|.. ...+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 57788887742 247899999964 44542 57889998864
No 18
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=36.80 E-value=9.4 Score=29.68 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=11.7
Q ss_pred eeEEEecCCCCeEE
Q 005675 625 WEIVYTDDEGDMML 638 (684)
Q Consensus 625 ~~v~Y~D~eGD~ml 638 (684)
-.|+|+|.+|+|=.
T Consensus 19 c~V~YtD~dG~WGV 32 (46)
T 1e8p_A 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred ceEEEEcCCCcccc
Confidence 35999999999954
No 19
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=36.45 E-value=1.1e+02 Score=28.42 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=64.2
Q ss_pred ccCCCCCCEEEEE-e--cC-CCcEEEEEEEccccCCCCCCccc-cCCcccchhHHHHHHHHHcCCeeEEEEecCC-----
Q 005675 198 SKRLVAGDTFVFL-R--GE-NGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT----- 267 (684)
Q Consensus 198 ~K~L~aGD~VvF~-R--~~-~G~l~VgIRRa~~~~~~~p~sv~-~~~sm~~gvla~A~~a~~~~~~F~V~Y~Pr~----- 267 (684)
.+..+.||.|.+. . .. +|+.+-.-+. ..|.... ....+-.| +.+|..-...|..++|.--|..
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 3456789998873 3 23 7776544321 1232222 11222223 4666666778888888876643
Q ss_pred -C--cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 005675 268 -S--QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 314 (684)
Q Consensus 268 -s--eFvV~~~~y~~A~~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~ 314 (684)
. -+.|+++.+ . ...+.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--GIELEKGMSVFGQ--TEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--TSCCCTTCEEEEE--ETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 1 678888888 1 3589999999854 4443 468899999975
No 20
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=36.35 E-value=32 Score=28.73 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=30.3
Q ss_pred hhhhcccCCCCCCEEEEEec-CCCcEEEEEEEcccc
Q 005675 193 STFVTSKRLVAGDTFVFLRG-ENGELHVGVRCLARQ 227 (684)
Q Consensus 193 s~FV~~K~L~aGD~VvF~R~-~~G~l~VgIRRa~~~ 227 (684)
.++++.-+|+.||.+...-+ .+|++.++.+|-++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 48999999999999999885 588999999996543
No 21
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=35.91 E-value=50 Score=28.71 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=39.8
Q ss_pred cCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCcceEEEeecCCCCCCCCCccccCccccccC
Q 005675 282 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVA 353 (684)
Q Consensus 282 ~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~~ 353 (684)
...|.+|+++-.++ ++- ++|-++|++|... ....|.+++.. .+-|.+=+|.|+..
T Consensus 19 ~~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~---------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDC---RFYPAKVTAVNKD---------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp --CCCTTCEEEEEC-TTS---CEEEEEEEEECTT---------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred CcccccCCEEEEEe-CCC---CEeeEEEEEECCC---------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 46899999999999 443 8999999999742 46999999933 44566666666543
No 22
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=35.25 E-value=37 Score=26.68 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=30.6
Q ss_pred CCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCcceEEEeecCCC
Q 005675 283 NKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 335 (684)
Q Consensus 283 ~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~ 335 (684)
..|.+|+.+..+|..|. .||-++|.++...+ ....|.-.+=.
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~~~--------~~~~V~f~DYG 43 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDFKR--------ETCVVVYTGYG 43 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEETTT--------TEEEEEETTTT
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEEcCC
Confidence 47999999999995343 89999999996311 34567775533
No 23
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=34.78 E-value=1e+02 Score=29.39 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=61.6
Q ss_pred CCCCCEEEE-Ee--cCCCcEEEEEEEccccCCCCCCccc-cCCcccchhHHHHHHHHHcCCeeEEEEecCC------C--
Q 005675 201 LVAGDTFVF-LR--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRT------S-- 268 (684)
Q Consensus 201 L~aGD~VvF-~R--~~~G~l~VgIRRa~~~~~~~p~sv~-~~~sm~~gvla~A~~a~~~~~~F~V~Y~Pr~------s-- 268 (684)
.+.||.|++ |. ..+|+.+-.-+.. .|.... ....+-.| +.+|..-...|..++|..-|-. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568898877 33 3477765443210 122221 12222223 4666666778888888876643 1
Q ss_pred cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 005675 269 QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 314 (684)
Q Consensus 269 eFvV~~~~y~~A~~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~ 314 (684)
-+.|+++.+.. ...+.+||+|.+ ++++- + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 56788888753 347999999985 44543 2 6899999975
No 24
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=32.17 E-value=39 Score=25.94 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=28.7
Q ss_pred CCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCcceEEEeecCCC
Q 005675 284 KFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 335 (684)
Q Consensus 284 ~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~ 335 (684)
.|.+|+.+-..|..|. .||-++|.++.... ....|...+=.
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~~~--------~~~~V~fvDYG 41 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHSSG--------MTAVVKFIDYG 41 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--CC--------SEEEEEETTTC
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeCCC--------CEEEEEEEccC
Confidence 4999999999995444 89999999995311 34556665543
No 25
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=31.27 E-value=45 Score=26.70 Aligned_cols=43 Identities=5% Similarity=0.224 Sum_probs=32.5
Q ss_pred cCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCcceEEEeecCCC
Q 005675 282 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 335 (684)
Q Consensus 282 ~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~ 335 (684)
...|.+|+.+.-+|..|. .||.++|.+|...+ ....|...+-.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~--------~~~~V~fvdYG 48 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN--------GTAAITFAGYG 48 (64)
T ss_dssp SSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT--------TEEEEEETTTT
T ss_pred CCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEEecC
Confidence 468999999999995443 89999999997311 25678777654
No 26
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.81 E-value=51 Score=27.64 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=32.0
Q ss_pred cCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCcceEEEeecCC
Q 005675 282 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEP 334 (684)
Q Consensus 282 ~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~ 334 (684)
...|.+|+++.-+|. |. .||-++|.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DC---RYYPAKIEAINK------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SS---SEEEEEEEEEST------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CC---CEEEEEEEEECC------C---CEEEEEEecC
Confidence 458999999999996 43 899999999963 1 3578988875
No 27
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=25.33 E-value=64 Score=27.84 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=31.6
Q ss_pred cCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCcceEEEeecCCC
Q 005675 282 NNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPA 335 (684)
Q Consensus 282 ~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~ 335 (684)
...|.+|+.+...|..|. .||-++|.+|.... ....|.-.+=.
T Consensus 8 ~~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~~--------~~~~V~fiDYG 50 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG---CIYPATIASIDFKR--------ETCVVVYTGYG 50 (88)
T ss_dssp -CCCCSSCEEEEECTTTC---CEEEEEEEEEETTT--------TEEEEEETTTC
T ss_pred cCCCCCCCEEEEEECCCC---CEEEEEEEEecCCC--------CEEEEEEecCC
Confidence 468999999999995343 89999999996311 34667775544
No 28
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.39 E-value=51 Score=31.59 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.0
Q ss_pred cCCCCCCEEEEEecCCCcEEEEEE
Q 005675 199 KRLVAGDTFVFLRGENGELHVGVR 222 (684)
Q Consensus 199 K~L~aGD~VvF~R~~~G~l~VgIR 222 (684)
..|.+||.|-|++..+|+|.+.|-
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEES
T ss_pred cccCCCCEEEEEEcCCcEEEEEEC
Confidence 457899999999999999998863
No 29
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=23.08 E-value=2e+02 Score=27.41 Aligned_cols=103 Identities=10% Similarity=0.155 Sum_probs=64.4
Q ss_pred CCCCCCEEEE-Ee--cCCCcEEEEEEEccccCCCCCCccc-cCCcccchhHHHHHHHHHcCCeeEEEEecCCC-------
Q 005675 200 RLVAGDTFVF-LR--GENGELHVGVRCLARQQSSMPSSVI-SSQSMHLGVLATASHAVATQTMFVVYYKPRTS------- 268 (684)
Q Consensus 200 ~L~aGD~VvF-~R--~~~G~l~VgIRRa~~~~~~~p~sv~-~~~sm~~gvla~A~~a~~~~~~F~V~Y~Pr~s------- 268 (684)
..+.||.|.+ |+ ..+|+.+-.-+-. +.|.... ....+- --+.+|..-...|..++|..-|...
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vi-pG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLS-EGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSC-HHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCcc-HHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5778999988 34 3578765432111 1122222 112222 2356777777889999998776431
Q ss_pred -cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 005675 269 -QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 314 (684)
Q Consensus 269 -eFvV~~~~y~~A~~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~ 314 (684)
=+.|+++.+.. ...+.+||+|.+ ++++- ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMD--AGEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTT--TCCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCC--cCCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 46788887753 346899999875 44442 468899999985
No 30
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=22.48 E-value=81 Score=28.39 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=43.9
Q ss_pred eHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeecCCCCCCCCCcceEEEeecCCCCCCCCCccccCcccccc
Q 005675 273 SLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFV 352 (684)
Q Consensus 273 ~~~~y~~A~~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 352 (684)
+.+.|-.-+..+.+||||+||.=.-|+.+. -=.|++. ++. + .-| ..||.|..... +-.|+-=.||.+.
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~-Gl~-----~vQv~W~~~G~---TyWV~~~~~Ellg 77 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N-GVP-----PVQVFWESTGR---TYWVHWHMLEILG 77 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T-TSS-----EEEEEETTTTE---EEEEEGGGEEECC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C-CCc-----cceeeehhcCc---eEEEEeehhhhcC
Confidence 456677888889999999999744443322 2367777 432 1 122 89999987662 4445555666654
Q ss_pred C
Q 005675 353 A 353 (684)
Q Consensus 353 ~ 353 (684)
.
T Consensus 78 ~ 78 (105)
T 2jng_A 78 F 78 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=20.38 E-value=4.4e+02 Score=24.52 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCeeEEEEecCC------C--cceeeHHHHHHHHcCCCccCCEEEEEEecCCCCCceeeeEEeeeec
Q 005675 246 LATASHAVATQTMFVVYYKPRT------S--QFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVED 314 (684)
Q Consensus 246 la~A~~a~~~~~~F~V~Y~Pr~------s--eFvV~~~~y~~A~~~~w~~GmRFkM~fE~eds~~~~~~GTI~~v~~ 314 (684)
+.+|..-...|..++|+--|.. . =..|+++.+.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 57 ~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 57 LDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 5677778889999999876532 2 467889888653 456788999965 321 589999975
Done!