Query 005676
Match_columns 683
No_of_seqs 174 out of 227
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2370 Cactin [Signal transdu 100.0 1E-183 3E-188 1450.1 42.1 558 102-683 39-623 (623)
2 PF09732 CactinC_cactus: Cactu 100.0 6.2E-84 1.4E-88 591.6 11.9 125 559-683 1-125 (125)
3 PF10312 Cactin_mid: Conserved 100.0 1.1E-60 2.4E-65 473.2 18.3 186 220-419 1-191 (191)
4 KOG2370 Cactin [Signal transdu 97.7 0.0011 2.4E-08 73.8 16.5 239 99-425 32-283 (623)
5 KOG0227 Splicing factor 3a, su 96.2 0.0061 1.3E-07 61.2 4.6 77 598-678 129-214 (222)
6 TIGR01642 U2AF_lg U2 snRNP aux 95.8 0.0057 1.2E-07 68.8 3.2 21 590-612 404-425 (509)
7 COG5246 PRP11 Splicing factor 95.8 0.014 3E-07 58.3 5.2 73 599-677 136-217 (222)
8 KOG4676 Splicing factor, argin 95.6 0.0075 1.6E-07 66.1 2.6 22 67-88 344-365 (479)
9 KOG2888 Putative RNA binding p 95.1 0.01 2.2E-07 63.9 1.7 24 60-83 370-393 (453)
10 KOG1029 Endocytic adaptor prot 93.8 20 0.00044 43.4 25.5 46 373-418 548-601 (1118)
11 TIGR01642 U2AF_lg U2 snRNP aux 92.6 0.1 2.2E-06 58.8 3.7 11 287-297 188-198 (509)
12 TIGR01622 SF-CC1 splicing fact 92.4 0.082 1.8E-06 58.8 2.6 11 286-296 198-208 (457)
13 KOG1847 mRNA splicing factor [ 90.4 0.17 3.8E-06 58.7 2.6 19 57-75 762-780 (878)
14 PF10312 Cactin_mid: Conserved 87.8 1.1 2.4E-05 45.5 6.1 44 363-406 64-108 (191)
15 KOG2888 Putative RNA binding p 86.7 0.29 6.3E-06 53.1 1.2 11 64-74 356-366 (453)
16 KOG0147 Transcriptional coacti 86.7 0.91 2E-05 52.2 5.1 12 257-268 276-288 (549)
17 KOG3263 Nucleic acid binding p 84.4 0.39 8.5E-06 47.8 0.8 12 150-161 162-173 (196)
18 KOG1847 mRNA splicing factor [ 83.0 0.57 1.2E-05 54.7 1.4 12 41-52 726-737 (878)
19 KOG2985 Uncharacterized conser 77.8 3 6.4E-05 44.1 4.4 16 67-82 211-226 (306)
20 KOG0670 U4/U6-associated splic 76.6 4.7 0.0001 47.0 6.0 52 585-650 666-720 (752)
21 PF08648 DUF1777: Protein of u 76.3 3 6.6E-05 41.3 4.0 18 140-157 134-152 (180)
22 PF06495 Transformer: Fruit fl 72.8 2.6 5.7E-05 42.2 2.5 14 49-62 34-47 (182)
23 KOG0670 U4/U6-associated splic 49.3 13 0.00029 43.4 3.0 14 381-394 479-492 (752)
24 PF06465 DUF1087: Domain of Un 48.0 24 0.00052 30.4 3.6 13 391-403 20-32 (66)
25 PTZ00266 NIMA-related protein 44.8 1.2E+02 0.0026 38.5 10.3 24 147-170 401-434 (1021)
26 KOG4246 Predicted DNA-binding 42.9 11 0.00025 45.6 1.2 31 558-591 1007-1037(1194)
27 KOG4661 Hsp27-ERE-TATA-binding 42.8 4.2E+02 0.0092 31.7 13.3 8 311-318 727-734 (940)
28 KOG1029 Endocytic adaptor prot 39.8 3.3E+02 0.0072 33.7 12.2 18 286-303 483-500 (1118)
29 smart00774 WRKY DNA binding do 37.1 46 0.001 28.0 3.6 50 576-634 3-52 (59)
30 KOG0132 RNA polymerase II C-te 36.0 32 0.0007 41.7 3.4 32 159-200 422-453 (894)
31 PF01701 PSI_PsaJ: Photosystem 34.5 9.1 0.0002 29.4 -0.8 10 602-611 28-37 (37)
32 PF13983 YsaB: YsaB-like lipop 33.7 23 0.0005 30.8 1.3 17 656-672 56-74 (77)
33 KOG3088 Secretory carrier memb 33.4 90 0.002 34.1 5.9 14 147-160 5-18 (313)
34 KOG4246 Predicted DNA-binding 33.2 30 0.00065 42.2 2.6 11 314-324 581-591 (1194)
35 PF00659 POLO_box: POLO box du 32.6 22 0.00048 29.7 1.0 21 655-675 1-21 (68)
36 KOG0120 Splicing factor U2AF, 31.6 40 0.00087 39.2 3.2 9 556-564 487-495 (500)
37 KOG0120 Splicing factor U2AF, 30.8 41 0.0009 39.1 3.2 10 287-296 302-311 (500)
38 KOG1882 Transcriptional regula 29.6 33 0.00072 36.5 2.0 9 41-49 33-41 (293)
39 KOG0333 U5 snRNP-like RNA heli 28.4 64 0.0014 38.0 4.1 52 145-209 138-189 (673)
40 smart00061 MATH meprin and TRA 27.5 65 0.0014 27.0 3.1 70 589-668 16-86 (95)
41 PRK02733 photosystem I reactio 26.5 12 0.00025 29.5 -1.4 9 603-611 29-37 (42)
42 TIGR01994 SUF_scaf_2 SUF syste 26.2 1.2E+02 0.0025 29.2 4.9 50 363-412 70-122 (137)
43 CHL00105 psaJ photosystem I su 25.5 13 0.00028 29.3 -1.3 9 603-611 29-37 (42)
44 PTZ00121 MAEBL; Provisional 25.3 3.5E+02 0.0076 35.9 9.7 8 629-636 1980-1987(2084)
45 PF04889 Cwf_Cwc_15: Cwf15/Cwc 25.3 1.3E+02 0.0029 31.9 5.5 20 189-208 149-168 (244)
46 PF11861 DUF3381: Domain of un 23.5 80 0.0017 31.4 3.3 40 256-301 34-75 (159)
47 KOG4661 Hsp27-ERE-TATA-binding 22.8 1.1E+03 0.023 28.6 12.3 7 564-570 927-933 (940)
48 PTZ00121 MAEBL; Provisional 22.5 8.8E+02 0.019 32.6 12.3 18 220-237 1254-1271(2084)
49 KOG3869 Uncharacterized conser 21.6 57 0.0012 37.1 2.1 6 174-179 361-366 (450)
50 KOG0132 RNA polymerase II C-te 20.7 77 0.0017 38.7 3.0 6 590-595 708-713 (894)
51 PF10984 DUF2794: Protein of u 20.7 1.2E+02 0.0026 27.4 3.5 21 602-626 37-57 (85)
52 PRK14082 hypothetical protein; 20.6 1.1E+02 0.0023 26.5 3.0 47 356-402 14-65 (65)
No 1
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-183 Score=1450.07 Aligned_cols=558 Identities=51% Similarity=0.893 Sum_probs=489.8
Q ss_pred hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCcccccchhhhhhhcCCChhhhhH
Q 005676 102 DHRKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSV 181 (683)
Q Consensus 102 ~~~~~~~~~~~~ee~~~~~~~kk~~k~a~~~~~~l~~~~~~gYTn~dNPFGD~nL~e~FVW~KK~Eke~~~gls~~e~~~ 181 (683)
..+..++...++||+.+++|.||++|+|.+.+++++++++.||||++|||||+|||+||||+||+|+++..|+|+.++++
T Consensus 39 r~Kee~k~~e~~EEKrarrm~kK~~K~a~R~~~~~~d~~~~~YsN~~npF~DSnLT~tFvw~kklere~~rgls~~ef~~ 118 (623)
T KOG2370|consen 39 RSKEESKSKEYSEEKRARRMSKKAQKKALRAAKKLKDQSVSGYSNDSNPFGDSNLTRTFVWGKKLEREGSRGLSPREFRV 118 (623)
T ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhhcccccccCccCCCCCcccccchhheeccchhhhhcccCCChhhccH
Confidence 33566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhHhhhhccCCCCchh
Q 005676 182 KAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARER-ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPID 260 (683)
Q Consensus 182 k~~~~r~~e~~~EiEkvKkRReeRE~Ek~~~Eee~~~l~Rer-e~~~~~eW~~kEd~FhL~Qak~RS~IRIregRAKPID 260 (683)
.....|+.+|+.|+++||++|++|+.|++++|+++.|+||.+ ++++|.+|..+| |||+|+|+||.|||++|||||||
T Consensus 119 ~~~qrr~renl~evekvkk~reer~~eka~~Ede~mmlqrar~aa~qf~d~~~ke--Fh~dq~KlrseIrl~~Grak~id 196 (623)
T KOG2370|consen 119 SNQQRRARENLPEVEKVKKRREERREEKAMQEDEFMMLQRARRAAIQFKDWRSKE--FHFDQDKLRSEIRLRPGRAKPID 196 (623)
T ss_pred hhHHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhccccccc--chhhhHhhhheeeecCCccchhh
Confidence 888888999999999999999999999999999999999999 999999999999 99999999999999999999999
Q ss_pred HHhhhccCCCCCcccccchhhhhccCCHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHhhHHHHhhh
Q 005676 261 VLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARV 340 (683)
Q Consensus 261 ~Lak~l~~~d~~die~~ePy~i~~GLt~~dLeeL~~DIk~yl~Le~~~~~n~~fW~~m~vic~deL~~~rk~e~~~~~~~ 340 (683)
+|++||.+.+.++++|++||.||+||+++|||+|..||++|++||+ ++++++||.+|++||+|+|+..+ ++..
T Consensus 197 ll~~~~dfgdeldmel~eP~~vlkg~~vedlEel~~dIk~y~ele~-~~kr~tyW~~v~~iv~delq~~~--~aqn---- 269 (623)
T KOG2370|consen 197 LLKNYIDFGDELDMELSEPYSVLKGLKVEDLEELSRDIKDYQELET-NQKRLTYWKDVIMIVNDELQHNK--VAQN---- 269 (623)
T ss_pred HHHhhhcccchhhhhccChHHHHccCCHhHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH--hhhh----
Confidence 9999999999999999999999999999999999999999999998 68999999999999999998762 2211
Q ss_pred cCCCCchhhhhhhhccchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005676 341 RGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAK 420 (683)
Q Consensus 341 ~G~~~~~~~~~~~~gi~~sV~~DI~~il~gKS~eELeeLE~qI~~KL~Sge~iDVeYWE~LLk~L~v~kAka~L~~~h~~ 420 (683)
.++.+||++|..||..||.|||++||++|+.||++||+||.++|++||+.||++|++|||+|+|+++|+.
T Consensus 270 ----------sRgd~~haave~dv~~il~~Ks~~qL~eLe~qieaklrsns~~d~~YWedll~qLk~ykAra~Lke~h~e 339 (623)
T KOG2370|consen 270 ----------SRGDKLHAAVEVDVRKILAGKSFEQLEELEAQIEAKLRSNSPLDTDYWEDLLNQLKSYKARARLKETHNE 339 (623)
T ss_pred ----------ccccceehhhhhhHHHHhCCcCHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccchhcccc---ccCCC--------------chh-hccccCCCCCcccc---hhHHhhhcCCC--CCCC
Q 005676 421 MLRKHLQRLEQPSEVAKFET---DLDSM--------------PEA-EVIEHDDNEPVLED---TQEAEKEAGSF--SPEL 477 (683)
Q Consensus 421 ~l~~~l~~l~~~q~~~~~~~---~~~~~--------------~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~--sp~~ 477 (683)
+|+.+|..|++.+.++++.. ++... ++. .......+.|..++ ...+.+.+|+| ||.+
T Consensus 340 ~Lr~~l~~Lk~e~~~e~~qevapqlkeemed~eee~~~~~~Dpel~e~e~a~~~r~l~~e~~d~~rel~~~gny~~S~~y 419 (623)
T KOG2370|consen 340 ELRIRLNKLKNEEWDEAFQEVAPQLKEEMEDREEELYIVPIDPELIEREQAIPRRPLPEELADYERELYDAGNYVKSPTY 419 (623)
T ss_pred HHHHHHHHhhhhhhhhhhhhhChhhhhhhhcchhhcccCCCCCCccccccccCCCCCchHHHHHHHHHHHccccccCccc
Confidence 99999999998887664431 11100 000 11112222333321 13457889999 9999
Q ss_pred cCCCCCCcCCCh-hHHHH-HHHHHHHHHHHHHHH-HHHHhhhCCCCCCChHHHHHHHHHhcccccccccccCccccccCC
Q 005676 478 LHGDDDEEAIDP-DEDRA-LLERKRIAVLEDQQR-RIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDS 554 (683)
Q Consensus 478 ~~~~~~~~~i~~-~~d~~-~l~~~r~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~a~~~m~~~E~~F~~~~Ev~l~~ 554 (683)
|+.++.+..++| +.+.. +|......+..++.. ++-..+.+.++|. .+++.|+ +..||+.++++|+ +|++|++
T Consensus 420 i~~~~ptqa~dp~~p~~e~Ll~e~e~~~~~tqr~~R~~~~~ds~~aPq--e~em~a~-a~eGMq~~eaifg--aE~~Lda 494 (623)
T KOG2370|consen 420 IPESDPTQAQDPTEPKNENLLNEDEDSIANTQRLERLYLQSDSAEAPQ--ELEMLAD-AVEGMQTDEAIFG--AEVNLDA 494 (623)
T ss_pred ccCCCcccccCCCCcchhhhhhhhHHHHHHHHHHHHHhhcCCCcCCcH--HHHHHHH-HHhcccccchhcc--chhcccc
Confidence 998777676666 33333 444445555444332 3333444444555 4555554 4456999999998 5999999
Q ss_pred ccccccccCCCCCCcccccccccccccccccccCCCCCCCCccccceeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEE
Q 005676 555 QVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIR 634 (683)
Q Consensus 555 ~~y~W~dKYRPRKPrYFNRVhTGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIR 634 (683)
++|||+||||||||+||||||||||||||||||||+|||||||||||||||||||||||++||||+|++|.+++||||||
T Consensus 495 ~~~lw~DkyrprKP~YfNRVhtGfeWNkYNQtHyd~dnPPPKiVQGYkFNIFYPDLidk~~aP~y~ie~~~d~~d~ciIR 574 (623)
T KOG2370|consen 495 EVYLWHDKYRPRKPHYFNRVHTGFEWNKYNQTHYDEDNPPPKIVQGYKFNIFYPDLIDKGRAPTYRIERCRDKNDFCIIR 574 (623)
T ss_pred hhhhhccCcCcCCcchhhhhccccccccccccccccCCCCchhhcceeecccchhhhccccCCeeeeeecCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EecCCCCcceeeeeecccccccCCCccccccccceeEEEEeeccccccC
Q 005676 635 FHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 683 (683)
Q Consensus 635 F~AGPPYEDIAFrIVnrEWeyS~KrGFr~~FdrGILqL~FnFKr~rYRR 683 (683)
||||||||||||+|||||||||||+||||+|+||||||||+||||||||
T Consensus 575 F~aGpPYeDIAFkIVnkeWeyshKrGfKcqF~ngvlqL~F~FKk~ryRR 623 (623)
T KOG2370|consen 575 FHAGPPYEDIAFKIVNKEWEYSHKRGFKCQFDNGVLQLWFRFKKYRYRR 623 (623)
T ss_pred eccCCcchhhhhhhhcchhhhhhhcCccceeeCCeeeeeehhhhhhccC
Confidence 9999999999999999999999999999999999999999999999998
No 2
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=100.00 E-value=6.2e-84 Score=591.56 Aligned_cols=125 Identities=82% Similarity=1.605 Sum_probs=124.0
Q ss_pred ccccCCCCCCcccccccccccccccccccCCCCCCCCccccceeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEEEecC
Q 005676 559 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAG 638 (683)
Q Consensus 559 W~dKYRPRKPrYFNRVhTGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIRF~AG 638 (683)
|+|||+||||+||||||||||||||||||||+|||||||||||||||||||||||++||+|+|++++++++||||+||||
T Consensus 1 w~~~~~~~kP~~fnrv~tg~~WnkyN~thYd~dnpPPK~vqGYkFnIfYPdL~d~~~~P~y~i~~~~~~~~~~~L~F~Ag 80 (125)
T PF09732_consen 1 WSDKYRPRKPRYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLIDKSKTPRYRIEPDEDNPDFCILRFHAG 80 (125)
T ss_pred CCccCcccCCcEEEEEEecccccccchhccCCCCCCCceeeeeEEEEECCcccCCCCCCcEEEEECCCCCCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred CCCcceeeeeecccccccCCCccccccccceeEEEEeeccccccC
Q 005676 639 PPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 683 (683)
Q Consensus 639 PPYEDIAFrIVnrEWeyS~KrGFr~~FdrGILqL~FnFKr~rYRR 683 (683)
||||||||||||||||||+++||+|+|++|||||||+|||++|||
T Consensus 81 pPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~gilqL~F~FKr~~Yrr 125 (125)
T PF09732_consen 81 PPYEDIAFKIVNREWDYSHKRGFRCSFDRGILQLYFNFKRYRYRR 125 (125)
T ss_pred CCCcCEEEEEecCeeecCCCCCceEEeeCCEEEEEEEEEhhhccC
Confidence 999999999999999999999999999999999999999999998
No 3
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=100.00 E-value=1.1e-60 Score=473.20 Aligned_cols=186 Identities=53% Similarity=0.940 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHhhhhccCCCCchhHHhhhccC-----CCCCcccccchhhhhccCCHHHHHHH
Q 005676 220 ARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSG-----SDDLDIEINEPYMVFKGLTVKEMEEL 294 (683)
Q Consensus 220 ~Rere~~~~~eW~~kEd~FhL~Qak~RS~IRIregRAKPID~Lak~l~~-----~d~~die~~ePy~i~~GLt~~dLeeL 294 (683)
||++++++|.+|++||++|||+||++||.|||++|||||||+||+||++ .++++++|++||+||+|||++||++|
T Consensus 1 qR~~e~~~~~ew~~kE~~F~L~Qak~rs~iRi~egRaKpID~La~~l~~~~~~~~~~~~~~~~eP~~i~~gL~~~dleeL 80 (191)
T PF10312_consen 1 QREREAEQFEEWEAKEEEFHLEQAKKRSEIRIREGRAKPIDLLAKNLRIIDGEREDDLEIELHEPYTIFEGLSLEDLEEL 80 (191)
T ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHhhccccccccccCcccCHHHHHhhCCHHHHHHH
Confidence 5889999999999999999999999999999999999999999999998 56789999999999999999999999
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHhhHHHHhhhcCCCCchhhhhhhhccchhHHHHHHHhcCCCCHH
Q 005676 295 RDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHK 374 (683)
Q Consensus 295 ~~DIk~yl~Le~~~~~n~~fW~~m~vic~deL~~~rk~e~~~~~~~~G~~~~~~~~~~~~gi~~sV~~DI~~il~gKS~e 374 (683)
.+||++|++||+++ .|.+||++|++||+|+|.++++.++.. .+.+.|||+||.+||+.||+|||++
T Consensus 81 ~~dIk~y~~Le~~~-~n~~fW~~~~~v~~del~~~~~~~~~~-------------~~~~~~ih~sV~~dI~~il~gKs~~ 146 (191)
T PF10312_consen 81 LEDIKVYLELERDN-KNREFWEAMLVVCEDELAKLRKKEPEG-------------RAVRSGIHSSVAADIQKILSGKSYE 146 (191)
T ss_pred HHHHHHHHHHcccc-cHHHHHHHHHHHHHHHHHHhhcccccc-------------cchhhcccHHHHHHHHHHHccCCHH
Confidence 99999999999864 499999999999999999987643211 1125899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005676 375 ELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHA 419 (683)
Q Consensus 375 ELeeLE~qI~~KL~Sge~iDVeYWE~LLk~L~v~kAka~L~~~h~ 419 (683)
||++||.||++||.||+++||+|||+||++|+||||||+|+++|+
T Consensus 147 eL~~Le~qI~~KL~s~~~~Dv~YWE~lL~~L~v~kAka~L~~~h~ 191 (191)
T PF10312_consen 147 ELEELEQQIKAKLRSGEAIDVEYWESLLKQLKVFKAKARLREIHQ 191 (191)
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999995
No 4
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=97.71 E-value=0.0011 Score=73.80 Aligned_cols=239 Identities=22% Similarity=0.232 Sum_probs=134.8
Q ss_pred chhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCcccccchhhhhhhcCCChhh
Q 005676 99 SDHDHRKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEE 178 (683)
Q Consensus 99 s~~~~~~~~~~~~~~ee~~~~~~~kk~~k~a~~~~~~l~~~~~~gYTn~dNPFGD~nL~e~FVW~KK~Eke~~~gls~~e 178 (683)
++...+++++...++-|-..++.+..+.||+.+.+..... .+-++.-- |-+|++.||-= ++|+.+=
T Consensus 32 ~~~d~~rr~Kee~k~~e~~EEKrarrm~kK~~K~a~R~~~---~~~d~~~~--~YsN~~npF~D---------SnLT~tF 97 (623)
T KOG2370|consen 32 SDSDGGRRSKEESKSKEYSEEKRARRMSKKAQKKALRAAK---KLKDQSVS--GYSNDSNPFGD---------SNLTRTF 97 (623)
T ss_pred cccccchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHh---hccccccc--CccCCCCCccc---------ccchhhe
Confidence 3455677777777788888899999999998887776553 33333322 88999999953 3332221
Q ss_pred hh-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhhhccCCC
Q 005676 179 FS-VKAEKKR-QRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRL 256 (683)
Q Consensus 179 ~~-~k~~~~r-~~e~~~EiEkvKkRReeRE~Ek~~~Eee~~~l~Rere~~~~~eW~~kEd~FhL~Qak~RS~IRIregRA 256 (683)
.= .+.++.- .---..|+......|-.|+.- .|-+.-+-.|+.-+ .+=..+|++|.+.|--.++.|++++-+.
T Consensus 98 vw~kklere~~rgls~~ef~~~~~qrr~renl---~evekvkk~reer~---~eka~~Ede~mmlqrar~aa~qf~d~~~ 171 (623)
T KOG2370|consen 98 VWGKKLEREGSRGLSPREFRVSNQQRRARENL---PEVEKVKKRREERR---EEKAMQEDEFMMLQRARRAAIQFKDWRS 171 (623)
T ss_pred eccchhhhhcccCCChhhccHhhHHHHHHhcc---hHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHhhhhccccc
Confidence 10 0100000 011235666666555444421 11111111111111 1225689999999998899999999999
Q ss_pred Cc----hhHHhhhccCCCCCcccccchhhhhccCCHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHh
Q 005676 257 KP----IDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKK 332 (683)
Q Consensus 257 KP----ID~Lak~l~~~d~~die~~ePy~i~~GLt~~dLeeL~~DIk~yl~Le~~~~~n~~fW~~m~vic~deL~~~rk~ 332 (683)
|| +|-|..-|++.++- ..-+++| +.|+ +|=..| +-+|
T Consensus 172 keFh~dq~KlrseIrl~~Gr-------ak~idll------------~~~~----------dfgdel----dmel------ 212 (623)
T KOG2370|consen 172 KEFHFDQDKLRSEIRLRPGR-------AKPIDLL------------KNYI----------DFGDEL----DMEL------ 212 (623)
T ss_pred ccchhhhHhhhheeeecCCc-------cchhhHH------------Hhhh----------cccchh----hhhc------
Confidence 99 44444433332211 0000000 0111 111000 1111
Q ss_pred hHHHHhhhcCCCCchhhhhhhhccchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hCCcccHHHHHHHHHHHHHHHHH
Q 005676 333 DALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMR-AGTAKVVEYWEAILKRLHIYKAK 411 (683)
Q Consensus 333 e~~~~~~~~G~~~~~~~~~~~~gi~~sV~~DI~~il~gKS~eELeeLE~qI~~KL~-Sge~iDVeYWE~LLk~L~v~kAk 411 (683)
.+=-.+|+|++.++|++|-..|+.-.. .+.+..+.||+.|.--.---+++
T Consensus 213 -----------------------------~eP~~vlkg~~vedlEel~~dIk~y~ele~~~kr~tyW~~v~~iv~delq~ 263 (623)
T KOG2370|consen 213 -----------------------------SEPYSVLKGLKVEDLEELSRDIKDYQELETNQKRLTYWKDVIMIVNDELQH 263 (623)
T ss_pred -----------------------------cChHHHHccCCHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 112367899999999999999988776 45778899999987755555555
Q ss_pred HHHH------HHHHHHHHHH
Q 005676 412 ACLK------EIHAKMLRKH 425 (683)
Q Consensus 412 a~L~------~~h~~~l~~~ 425 (683)
++.- .+|+.|-...
T Consensus 264 ~~~aqnsRgd~~haave~dv 283 (623)
T KOG2370|consen 264 NKVAQNSRGDKLHAAVEVDV 283 (623)
T ss_pred HHhhhhccccceehhhhhhH
Confidence 5222 3576665444
No 5
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=96.16 E-value=0.0061 Score=61.17 Aligned_cols=77 Identities=26% Similarity=0.392 Sum_probs=58.5
Q ss_pred ccceeEEeeccccCCCCCCCcEEEEeCC------CCCCeEEEEEecCCCCcceeeeeecccccccCCCcccccc-c--cc
Q 005676 598 VQGYKFNIFYPDLVDKTKAPTYTIEKDG------SNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTF-E--RG 668 (683)
Q Consensus 598 VQGYKFNIFYPDLIDKtkaPty~ie~~~------~~~dtciIRF~AGPPYEDIAFrIVnrEWeyS~KrGFr~~F-d--rG 668 (683)
-||--|-|=||+..+ ...|.|.+.... -+..+--|.|- --|||-|||+|-++|-+.|.- =.|+| | -+
T Consensus 129 q~~L~fQv~Yp~i~~-~~~Pr~rfmssyeq~ve~~dk~~qyLvfa-aePyE~Iafk~p~~Eid~se~--Kf~t~wd~~tk 204 (222)
T KOG0227|consen 129 QQGLLFQVNYPEIEE-GIMPRHRFMSSYEQKVEPPDKSWQYLVFA-AEPYENIAFKVPSREIDKSEG--KFWTHWDAETK 204 (222)
T ss_pred ceeeEEEecchhhhh-ccCCcchhhhhhHhhcCCccccceEEEEE-eccccceeeecCchhhhhccC--ceeeeecCCCc
Confidence 389999999999875 557888766431 13457778775 468999999999999998863 34565 3 46
Q ss_pred eeEEEEeecc
Q 005676 669 ILHVYFNFKR 678 (683)
Q Consensus 669 ILqL~FnFKr 678 (683)
.+.|+|.||.
T Consensus 205 ~y~lqF~fk~ 214 (222)
T KOG0227|consen 205 QYTLQFFFKQ 214 (222)
T ss_pred eEEEEEEecc
Confidence 7999999985
No 6
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=95.85 E-value=0.0057 Score=68.78 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=13.9
Q ss_pred CCCCCCccccceeEEeeccc-cCC
Q 005676 590 HDNPPPKIVQGYKFNIFYPD-LVD 612 (683)
Q Consensus 590 ~DNPPPKiVQGYKFNIFYPD-LID 612 (683)
..++|.+||+- .|+|+|+ |+|
T Consensus 404 ~~~~~s~v~~l--~N~~~~~~l~~ 425 (509)
T TIGR01642 404 IGGKPTKVVQL--TNLVTGDDLMD 425 (509)
T ss_pred ccCCCceEEEe--ccCCchhHhcC
Confidence 45677788776 4888774 443
No 7
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=95.80 E-value=0.014 Score=58.34 Aligned_cols=73 Identities=29% Similarity=0.405 Sum_probs=54.7
Q ss_pred cceeEEeeccccCCCCCCCcEEEEeCC------CCCCeEEEEEecCCCCcceeeeeecccccccCCCccccccc---cce
Q 005676 599 QGYKFNIFYPDLVDKTKAPTYTIEKDG------SNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFE---RGI 669 (683)
Q Consensus 599 QGYKFNIFYPDLIDKtkaPty~ie~~~------~~~dtciIRF~AGPPYEDIAFrIVnrEWeyS~KrGFr~~Fd---rGI 669 (683)
-|--|-|=|||-. ....|.|.|...- -+..|--|.| |--|||-|||+|-|+|-+++- .|.|= -|.
T Consensus 136 ~Gl~iqvnY~Dd~-a~~~P~yRivs~lEq~ve~~d~~f~yLV~-a~ePyEnIafk~~~~ei~f~s----~~~~wDa~~~t 209 (222)
T COG5246 136 RGLGIQVNYEDDL-AEEMPQYRIVSSLEQNVEEYDESFRYLVF-ACEPYENIAFKFENKEIDFLS----IYEDWDAETGT 209 (222)
T ss_pred eeeEEEEeccchh-hccCcceehhhhhhhcchhhcccceEEEE-EeccccceeeecCCCccchhh----hcccccccCce
Confidence 4788999999743 3467999997541 1235777777 557899999999999988876 78873 567
Q ss_pred eEEEEeec
Q 005676 670 LHVYFNFK 677 (683)
Q Consensus 670 LqL~FnFK 677 (683)
..|.|-|+
T Consensus 210 Yt~qFff~ 217 (222)
T COG5246 210 YTLQFFFL 217 (222)
T ss_pred EEEEEeee
Confidence 77888775
No 8
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.56 E-value=0.0075 Score=66.13 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=10.0
Q ss_pred CCCCCCcccccccCCCCCCCCC
Q 005676 67 DRESDSSEDDGRRSKSNRRSRD 88 (683)
Q Consensus 67 ~~~~r~~~~~~rr~~s~~~~r~ 88 (683)
+++||+.+++++|.+|++++|+
T Consensus 344 SrRSRs~srerrrRRSrSrsRs 365 (479)
T KOG4676|consen 344 SRRSRSSSRERRRRRSRSRSRS 365 (479)
T ss_pred hhccccchhhhhhhhccccccC
Confidence 3445554444444444444443
No 9
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=95.05 E-value=0.01 Score=63.86 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=12.0
Q ss_pred hcccccCCCCCCCcccccccCCCC
Q 005676 60 KSKRNRHDRESDSSEDDGRRSKSN 83 (683)
Q Consensus 60 ~~~~~r~~~~~r~~~~~~rr~~s~ 83 (683)
+.|+.+|+|||||++|.+.|++|+
T Consensus 370 sk~~kkH~hRsrSRSR~~sRSrsr 393 (453)
T KOG2888|consen 370 SKDRKKHDHRSRSRSRSRSRSRSR 393 (453)
T ss_pred hhhhhhhchhhhhhhccccccccc
Confidence 344555566555555544433333
No 10
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=20 Score=43.41 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhCCc-------ccHHHHHHHHHHHHHHHH-HHHHHHHH
Q 005676 373 HKELEALQTKIELQMRAGTA-------KVVEYWEAILKRLHIYKA-KACLKEIH 418 (683)
Q Consensus 373 ~eELeeLE~qI~~KL~Sge~-------iDVeYWE~LLk~L~v~kA-ka~L~~~h 418 (683)
-++|++|++.+++||.-=+- +-.+|--.+|..=..|++ +-.|++.-
T Consensus 548 kdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~e 601 (1118)
T KOG1029|consen 548 KDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAE 601 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999963221 124555666666667773 34444433
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=92.58 E-value=0.1 Score=58.81 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=6.2
Q ss_pred CHHHHHHHHHH
Q 005676 287 TVKEMEELRDD 297 (683)
Q Consensus 287 t~~dLeeL~~D 297 (683)
|.++|.++..+
T Consensus 188 t~~~l~~~F~~ 198 (509)
T TIGR01642 188 VEEAVVDFFND 198 (509)
T ss_pred CHHHHHHHHHH
Confidence 55666665554
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=92.39 E-value=0.082 Score=58.82 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=6.5
Q ss_pred CCHHHHHHHHH
Q 005676 286 LTVKEMEELRD 296 (683)
Q Consensus 286 Lt~~dLeeL~~ 296 (683)
+|.++|.+|..
T Consensus 198 ~te~~l~~~f~ 208 (457)
T TIGR01622 198 ITEQELRQIFE 208 (457)
T ss_pred CCHHHHHHHHH
Confidence 45666666554
No 13
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.37 E-value=0.17 Score=58.66 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=7.8
Q ss_pred hhhhcccccCCCCCCCccc
Q 005676 57 ERTKSKRNRHDRESDSSED 75 (683)
Q Consensus 57 ~~~~~~~~r~~~~~r~~~~ 75 (683)
|.|+.+-+-+.|||+.++|
T Consensus 762 e~~s~~k~~rhhRS~~~~r 780 (878)
T KOG1847|consen 762 EDYSKDKRSRHHRSRKHER 780 (878)
T ss_pred hhhccccccccccCccccc
Confidence 4444443333344444433
No 14
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=87.84 E-value=1.1 Score=45.48 Aligned_cols=44 Identities=25% Similarity=0.473 Sum_probs=35.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHh-hCCcccHHHHHHHHHHHH
Q 005676 363 DVRNLLDGKTHKELEALQTKIELQMR-AGTAKVVEYWEAILKRLH 406 (683)
Q Consensus 363 DI~~il~gKS~eELeeLE~qI~~KL~-Sge~iDVeYWE~LLk~L~ 406 (683)
+=-.||.|-|.++|++|..+|+.-+. -+.+...+||++|+.-..
T Consensus 64 eP~~i~~gL~~~dleeL~~dIk~y~~Le~~~~n~~fW~~~~~v~~ 108 (191)
T PF10312_consen 64 EPYTIFEGLSLEDLEELLEDIKVYLELERDNKNREFWEAMLVVCE 108 (191)
T ss_pred CHHHHHhhCCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 33489999999999999999998886 233338999999987333
No 15
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=86.69 E-value=0.29 Score=53.14 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=4.3
Q ss_pred ccCCCCCCCcc
Q 005676 64 NRHDRESDSSE 74 (683)
Q Consensus 64 ~r~~~~~r~~~ 74 (683)
+|.+--+|+|+
T Consensus 356 sR~dkD~rrhR 366 (453)
T KOG2888|consen 356 SRRDKDSRRHR 366 (453)
T ss_pred hhcccchhhhc
Confidence 33333334443
No 16
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=86.67 E-value=0.91 Score=52.20 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=6.3
Q ss_pred Cchh-HHhhhccC
Q 005676 257 KPID-VLCKHLSG 268 (683)
Q Consensus 257 KPID-~Lak~l~~ 268 (683)
-|.. ++.-||.+
T Consensus 276 ~p~~rl~vgnLHf 288 (549)
T KOG0147|consen 276 GPMRRLYVGNLHF 288 (549)
T ss_pred cchhhhhhccccc
Confidence 3444 56666654
No 17
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=84.37 E-value=0.39 Score=47.85 Aligned_cols=12 Identities=17% Similarity=0.374 Sum_probs=5.2
Q ss_pred CCCCCCCCCccc
Q 005676 150 PFGDSNLNERFV 161 (683)
Q Consensus 150 PFGD~nL~e~FV 161 (683)
|.++++..+-.+
T Consensus 162 kv~g~dV~~v~~ 173 (196)
T KOG3263|consen 162 KVGGSDVGGVYK 173 (196)
T ss_pred cccCcccchhhh
Confidence 444444444333
No 18
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.05 E-value=0.57 Score=54.66 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=5.4
Q ss_pred cCCCCCCcccch
Q 005676 41 YNSSDESPERSS 52 (683)
Q Consensus 41 ~~~rd~~~~R~~ 52 (683)
++-|.|++.||+
T Consensus 726 ~rhrkRhrkrSr 737 (878)
T KOG1847|consen 726 SRHRKRHRKRSR 737 (878)
T ss_pred HhHhhhhccccc
Confidence 444444444444
No 19
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.77 E-value=3 Score=44.14 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=6.0
Q ss_pred CCCCCCcccccccCCC
Q 005676 67 DRESDSSEDDGRRSKS 82 (683)
Q Consensus 67 ~~~~r~~~~~~rr~~s 82 (683)
++.+++.+.+...++|
T Consensus 211 s~~~rs~s~sssddrs 226 (306)
T KOG2985|consen 211 SHKRRSLSESSSDDRS 226 (306)
T ss_pred cccccccccccccccc
Confidence 3333333333333333
No 20
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=76.61 E-value=4.7 Score=46.95 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=29.0
Q ss_pred cccCCCCCCCCccccceeEEeeccccCCCCCCCcEEEEeCCC-CC--CeEEEEEecCCCCcceeeeeec
Q 005676 585 QTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGS-NG--ETCIIRFHAGPPYEDIAFKIVN 650 (683)
Q Consensus 585 QTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~-~~--dtciIRF~AGPPYEDIAFrIVn 650 (683)
-+|||+| ||..|-+. || .|-.=++..... .| |+ .-..+|+|-|.|=-|+||-
T Consensus 666 dqHFD~d-----------~nf~~~e~-D~-vT~r~~~~vm~~vkPtkdl-~s~l~~~q~~~deq~~~~~ 720 (752)
T KOG0670|consen 666 DQHFDQD-----------LNFLYIEV-DK-VTEREKRTVMVNVKPTKDL-GSELIAVQRLPDEQPKIVQ 720 (752)
T ss_pred hhhcccc-----------cceEEEec-cc-cccceeEEEecccCcchhH-HHHHhccCCCCchhHHHHH
Confidence 4799987 88888774 33 222222222211 11 11 1124588888888888774
No 21
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=76.29 E-value=3 Score=41.32 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=8.1
Q ss_pred cccccCCCCC-CCCCCCCC
Q 005676 140 KVSGYSNDSN-PFGDSNLN 157 (683)
Q Consensus 140 ~~~gYTn~dN-PFGD~nL~ 157 (683)
...|+..|-| .-.++|+.
T Consensus 134 Gf~gF~TTKgK~v~gn~~~ 152 (180)
T PF08648_consen 134 GFGGFGTTKGKKVPGNNVG 152 (180)
T ss_pred cccccccCCCCccCCCCcc
Confidence 4455544444 33444443
No 22
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=72.84 E-value=2.6 Score=42.25 Aligned_cols=14 Identities=50% Similarity=0.650 Sum_probs=5.6
Q ss_pred ccchhhhhhhhhcc
Q 005676 49 ERSSRKRQERTKSK 62 (683)
Q Consensus 49 ~R~~~~~~~~~~~~ 62 (683)
||-+++++..+.+.
T Consensus 34 DR~r~~r~~k~~s~ 47 (182)
T PF06495_consen 34 DRVRRLRQRKTKST 47 (182)
T ss_pred HhhhhhccccCcCC
Confidence 33333344444433
No 23
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=49.34 E-value=13 Score=43.41 Aligned_cols=14 Identities=7% Similarity=0.060 Sum_probs=8.5
Q ss_pred HHHHHHHhhCCccc
Q 005676 381 TKIELQMRAGTAKV 394 (683)
Q Consensus 381 ~qI~~KL~Sge~iD 394 (683)
-+|-.||..-.+-|
T Consensus 479 leiLkKL~~AD~Ed 492 (752)
T KOG0670|consen 479 LEILKKLNDADPED 492 (752)
T ss_pred HHHHHHhhccCchh
Confidence 34777887545544
No 24
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=48.03 E-value=24 Score=30.38 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=11.0
Q ss_pred CcccHHHHHHHHH
Q 005676 391 TAKVVEYWEAILK 403 (683)
Q Consensus 391 e~iDVeYWE~LLk 403 (683)
+..|.+||+.||+
T Consensus 20 ~~~~~~yWe~LLr 32 (66)
T PF06465_consen 20 ESTDPNYWEKLLR 32 (66)
T ss_pred cccchHHHHHHHH
Confidence 4579999999995
No 25
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=44.83 E-value=1.2e+02 Score=38.50 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=14.6
Q ss_pred CCCCCCCCCCC----------Ccccccchhhhhh
Q 005676 147 DSNPFGDSNLN----------ERFVWRKKIERDV 170 (683)
Q Consensus 147 ~dNPFGD~nL~----------e~FVW~KK~Eke~ 170 (683)
..+|..|..+. -+=.|++.++++.
T Consensus 401 ~s~p~~d~~~~~s~~~~~~~~~~g~~g~r~eke~ 434 (1021)
T PTZ00266 401 ASVPSKDDRKYPQDGATHCHAVNGHYGGRVDKDH 434 (1021)
T ss_pred ccCCcccccccccccccccccccCccccccchhH
Confidence 34677777542 2345777777754
No 26
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=42.92 E-value=11 Score=45.59 Aligned_cols=31 Identities=13% Similarity=-0.041 Sum_probs=14.8
Q ss_pred cccccCCCCCCcccccccccccccccccccCCCC
Q 005676 558 WWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHD 591 (683)
Q Consensus 558 ~W~dKYRPRKPrYFNRVhTGyEWNKYNQTHYD~D 591 (683)
.-.++.--++-.++|-|. .-.+-||.|=+-|
T Consensus 1007 a~~~~vv~~~~~~v~~~~---~m~~~~q~eee~d 1037 (1194)
T KOG4246|consen 1007 AKTKEVVGSKEVTVGEAV---NMEVENQDEEEDD 1037 (1194)
T ss_pred Hhhcceeeecchhhhhhh---hhhhhhcchhhcc
Confidence 334444455555555442 1234466665543
No 27
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=42.83 E-value=4.2e+02 Score=31.72 Aligned_cols=8 Identities=25% Similarity=0.704 Sum_probs=4.5
Q ss_pred hHHHHHHH
Q 005676 311 HVEYWEAL 318 (683)
Q Consensus 311 n~~fW~~m 318 (683)
+-.||-.-
T Consensus 727 dDaYwpe~ 734 (940)
T KOG4661|consen 727 DDAYWPES 734 (940)
T ss_pred ccccCchh
Confidence 44688443
No 28
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.80 E-value=3.3e+02 Score=33.73 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 005676 286 LTVKEMEELRDDIKMYLD 303 (683)
Q Consensus 286 Lt~~dLeeL~~DIk~yl~ 303 (683)
|.+.++..|...|+.|.+
T Consensus 483 ~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 483 LMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778888888887644
No 29
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=37.06 E-value=46 Score=27.96 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=29.0
Q ss_pred ccccccccccccCCCCCCCCccccceeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEE
Q 005676 576 TGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIR 634 (683)
Q Consensus 576 TGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIR 634 (683)
-||-|-||.|-+.. .||.|.- | |--=+ ++.-.-+=.|+++.+++.+.+|.
T Consensus 3 DGy~WRKYGQK~ik-gs~~pRs---Y-YrCt~----~~~C~a~K~Vq~~~~d~~~~~vt 52 (59)
T smart00774 3 DGYQWRKYGQKVIK-GSPFPRS---Y-YRCTY----SQGCPAKKQVQRSDDDPSVVEVT 52 (59)
T ss_pred CcccccccCcEecC-CCcCcce---E-Eeccc----cCCCCCcccEEEECCCCCEEEEE
Confidence 59999999998775 5566643 3 22222 23344444567765455444443
No 30
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=36.00 E-value=32 Score=41.70 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=17.1
Q ss_pred cccccchhhhhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 005676 159 RFVWRKKIERDVSQGVPLEEFSVKAEKKRQRERMAEIEKVKK 200 (683)
Q Consensus 159 ~FVW~KK~Eke~~~gls~~e~~~k~~~~r~~e~~~EiEkvKk 200 (683)
+=.|-+++.+.. ... +.....|..-||+.|+.
T Consensus 422 rTLwvG~i~k~v----~e~------dL~~~feefGeiqSi~l 453 (894)
T KOG0132|consen 422 RTLWVGGIPKNV----TEQ------DLANLFEEFGEIQSIIL 453 (894)
T ss_pred eeeeeccccchh----hHH------HHHHHHHhcccceeEee
Confidence 567877777632 111 12234566666766553
No 31
>PF01701 PSI_PsaJ: Photosystem I reaction centre subunit IX / PsaJ; InterPro: IPR002615 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. This family consists of the photosystem I reaction centre subunit IX or PsaJ from various organisms including Synechocystis sp. (strain PCC 6803), Pinus thunbergii (Green pine) and Zea mays (Maize). PsaJ (P19443 from SWISSPROT) is a small 4.4kDa, chloroplast encoded, hydrophobic subunit of the photosystem I reaction complex whose function is not yet fully understood []. PsaJ can be cross-linked to PsaF (P12356 from SWISSPROT) and has a single predicted transmembrane domain. It has a proposed role in maintaing PsaF in the correct orientation to allow for fast electron transfer from soluble donor proteins to P700+ [].; GO: 0015979 photosynthesis, 0009522 photosystem I; PDB: 2WSF_J 2WSC_J 2O01_J 2WSE_J 1JB0_J 3PCQ_J 3LW5_J.
Probab=34.51 E-value=9.1 Score=29.37 Aligned_cols=10 Identities=50% Similarity=1.125 Sum_probs=6.6
Q ss_pred eEEeeccccC
Q 005676 602 KFNIFYPDLV 611 (683)
Q Consensus 602 KFNIFYPDLI 611 (683)
.||-||||+.
T Consensus 28 EiNRffPD~L 37 (37)
T PF01701_consen 28 EINRFFPDLL 37 (37)
T ss_dssp SSTTTSTS-S
T ss_pred HHHHhCCCcC
Confidence 3788888874
No 32
>PF13983 YsaB: YsaB-like lipoprotein
Probab=33.74 E-value=23 Score=30.79 Aligned_cols=17 Identities=47% Similarity=1.171 Sum_probs=12.5
Q ss_pred cCCCccccccc-cc-eeEE
Q 005676 656 SHKKGFKCTFE-RG-ILHV 672 (683)
Q Consensus 656 S~KrGFr~~Fd-rG-ILqL 672 (683)
+.+-||-|+|| .| .|||
T Consensus 56 ~r~E~FvCSFD~dGqFLHL 74 (77)
T PF13983_consen 56 ARKEGFVCSFDADGQFLHL 74 (77)
T ss_pred ccccceEEeECCCCcEEEe
Confidence 45679999998 45 5565
No 33
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.44 E-value=90 Score=34.07 Aligned_cols=14 Identities=43% Similarity=0.876 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCcc
Q 005676 147 DSNPFGDSNLNERF 160 (683)
Q Consensus 147 ~dNPFGD~nL~e~F 160 (683)
+.|||.|++|..||
T Consensus 5 d~NPFadp~~~NPF 18 (313)
T KOG3088|consen 5 DPNPFAEPELVNPF 18 (313)
T ss_pred CCCCCCCcccCCCC
Confidence 45777777777666
No 34
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=33.16 E-value=30 Score=42.24 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.9
Q ss_pred HHHHHHHHhHH
Q 005676 314 YWEALMVVCDW 324 (683)
Q Consensus 314 fW~~m~vic~d 324 (683)
-|.++-...+|
T Consensus 581 v~~clp~~~ew 591 (1194)
T KOG4246|consen 581 VSECLPSFDEW 591 (1194)
T ss_pred hHhhccchhhH
Confidence 44444444444
No 35
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=32.56 E-value=22 Score=29.70 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=19.3
Q ss_pred ccCCCccccccccceeEEEEe
Q 005676 655 YSHKKGFKCTFERGILHVYFN 675 (683)
Q Consensus 655 yS~KrGFr~~FdrGILqL~Fn 675 (683)
|+.|.|+=-.+.+|.+|.+||
T Consensus 1 y~~k~gi~~~LSng~vqv~Fn 21 (68)
T PF00659_consen 1 YRTKYGIGYQLSNGTVQVNFN 21 (68)
T ss_dssp EEECSEEEEEETTSEEEEEET
T ss_pred CccceEEEEEEeCCCEEEEEe
Confidence 678999999999999999986
No 36
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=31.61 E-value=40 Score=39.25 Aligned_cols=9 Identities=44% Similarity=0.830 Sum_probs=4.6
Q ss_pred cccccccCC
Q 005676 556 VYWWHDKYR 564 (683)
Q Consensus 556 ~y~W~dKYR 564 (683)
.|.=.|||-
T Consensus 487 sYydeDkY~ 495 (500)
T KOG0120|consen 487 SYYDEDKYH 495 (500)
T ss_pred EecCHHHhh
Confidence 355555553
No 37
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=30.78 E-value=41 Score=39.14 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=4.0
Q ss_pred CHHHHHHHHH
Q 005676 287 TVKEMEELRD 296 (683)
Q Consensus 287 t~~dLeeL~~ 296 (683)
+..++.||++
T Consensus 302 ~~~q~~Ell~ 311 (500)
T KOG0120|consen 302 TEDQVKELLD 311 (500)
T ss_pred CHHHHHHHHH
Confidence 3344444443
No 38
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=29.65 E-value=33 Score=36.51 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=3.6
Q ss_pred cCCCCCCcc
Q 005676 41 YNSSDESPE 49 (683)
Q Consensus 41 ~~~rd~~~~ 49 (683)
|..+|+++.
T Consensus 33 ~~~r~~~~~ 41 (293)
T KOG1882|consen 33 SGRRDKSPR 41 (293)
T ss_pred ccccccCcc
Confidence 334444433
No 39
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=28.40 E-value=64 Score=38.02 Aligned_cols=52 Identities=31% Similarity=0.487 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCCCcccccchhhhhhhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005676 145 SNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKAEKKRQRERMAEIEKVKKRREERALEK 209 (683)
Q Consensus 145 Tn~dNPFGD~nL~e~FVW~KK~Eke~~~gls~~e~~~k~~~~r~~e~~~EiEkvKkRReeRE~Ek 209 (683)
+++-||--++--.-+|.|.-++ .|+...+. ++...+-.|| .-+||-+-+.|+
T Consensus 138 ~~d~~~l~~~~~~i~~fgrG~~-----ag~d~~~q------kk~~s~~~~~--~e~r~t~~~ke~ 189 (673)
T KOG0333|consen 138 SNDYNPLYSSRHDIQLFGRGFV-----AGIDVKEQ------KKEKSKYGEM--MEKRRTEDEKEQ 189 (673)
T ss_pred cccchhhhcCcccchhhccccc-----cccchHHH------HhhhhhhhhH--hhhhcchhhhhh
Confidence 5666888888888888886544 35544322 2334445555 344555555553
No 40
>smart00061 MATH meprin and TRAF homology.
Probab=27.49 E-value=65 Score=27.02 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=38.8
Q ss_pred CCCCCCCccccceeEEee-ccccCCCCCCCcEEEEeCCCCCCeEEEEEecCCCCcceeeeeecccccccCCCcccccccc
Q 005676 589 DHDNPPPKIVQGYKFNIF-YPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFER 667 (683)
Q Consensus 589 D~DNPPPKiVQGYKFNIF-YPDLIDKtkaPty~ie~~~~~~dtciIRF~AGPPYEDIAFrIVnrEWeyS~KrGFr~~Fdr 667 (683)
+.-.-||..|-||++-|- ||+ ..--..+|.-........ ..|..-.+.|+|||..-.- +.....+.|..
T Consensus 16 ~~~~S~~f~~~g~~W~i~~~p~----~~~lsl~L~~~~~~~~~~-----~w~v~a~~~~~l~~~~~~~-~~~~~~~~F~~ 85 (95)
T smart00061 16 ESYFSPSEEHFNIPWRLKIYRK----NGFLSLYLHCEKEECDSR-----KWSIEAEFTLKLVSQNGKS-LSKKDKHVFEK 85 (95)
T ss_pred ceEeCChhEEcCceeEEEEEEc----CCEEEEEEEeCCCcCCCC-----CeEEEEEEEEEEEeCCCCE-EeeeeeEEEcC
Confidence 444568888999999985 888 111223344322111110 2234557889999987432 23334566765
Q ss_pred c
Q 005676 668 G 668 (683)
Q Consensus 668 G 668 (683)
+
T Consensus 86 ~ 86 (95)
T smart00061 86 P 86 (95)
T ss_pred C
Confidence 3
No 41
>PRK02733 photosystem I reaction center subunit IX; Provisional
Probab=26.46 E-value=12 Score=29.52 Aligned_cols=9 Identities=67% Similarity=1.427 Sum_probs=6.6
Q ss_pred EEeeccccC
Q 005676 603 FNIFYPDLV 611 (683)
Q Consensus 603 FNIFYPDLI 611 (683)
||-|||||+
T Consensus 29 iNRffPD~L 37 (42)
T PRK02733 29 FNRFFPDLL 37 (42)
T ss_pred HHHhCchHh
Confidence 677888775
No 42
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.
Probab=26.19 E-value=1.2e+02 Score=29.19 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=35.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhCCcc-cHHHHHH--HHHHHHHHHHHH
Q 005676 363 DVRNLLDGKTHKELEALQTKIELQMRAGTAK-VVEYWEA--ILKRLHIYKAKA 412 (683)
Q Consensus 363 DI~~il~gKS~eELeeLE~qI~~KL~Sge~i-DVeYWE~--LLk~L~v~kAka 412 (683)
=+..++.|||.+|+..|-..+.+-|.+++.. +.+=|.. +|.-++.|.+|-
T Consensus 70 ~~~e~i~Gk~~~ea~~l~~~~~~ml~~~~~~~~~~~l~dl~~l~~v~~~p~R~ 122 (137)
T TIGR01994 70 MMTELIKGKTVEEALSLVEAFSEMIQGQETDEDEEKLGDAEALAGVAKFPARI 122 (137)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCccccccchHHHhhccccCcchH
Confidence 3457999999999999999999999877533 3345663 444444455553
No 43
>CHL00105 psaJ photosystem I subunit IX
Probab=25.54 E-value=13 Score=29.26 Aligned_cols=9 Identities=44% Similarity=1.014 Sum_probs=6.6
Q ss_pred EEeeccccC
Q 005676 603 FNIFYPDLV 611 (683)
Q Consensus 603 FNIFYPDLI 611 (683)
||-||||++
T Consensus 29 iNRffPD~L 37 (42)
T CHL00105 29 INRFFPDAL 37 (42)
T ss_pred HHHhCChhh
Confidence 677888875
No 44
>PTZ00121 MAEBL; Provisional
Probab=25.27 E-value=3.5e+02 Score=35.85 Aligned_cols=8 Identities=25% Similarity=0.762 Sum_probs=4.2
Q ss_pred CeEEEEEe
Q 005676 629 ETCIIRFH 636 (683)
Q Consensus 629 dtciIRF~ 636 (683)
|+||.=|.
T Consensus 1980 dYCLkYFn 1987 (2084)
T PTZ00121 1980 DFCLKYFD 1987 (2084)
T ss_pred HHHHHHcC
Confidence 55555543
No 45
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=25.26 E-value=1.3e+02 Score=31.89 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005676 189 RERMAEIEKVKKRREERALE 208 (683)
Q Consensus 189 ~e~~~EiEkvKkRReeRE~E 208 (683)
.+=|+||+|||+-|++-.+.
T Consensus 149 ~~Ll~ELekIKkER~ee~~~ 168 (244)
T PF04889_consen 149 AALLRELEKIKKERAEEKAR 168 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45679999999866665533
No 46
>PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3. Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ].
Probab=23.46 E-value=80 Score=31.36 Aligned_cols=40 Identities=30% Similarity=0.448 Sum_probs=26.5
Q ss_pred CCchhHHhhhccCCCCCcccccchhh-hhc-cCCHHHHHHHHHHHHHH
Q 005676 256 LKPIDVLCKHLSGSDDLDIEINEPYM-VFK-GLTVKEMEELRDDIKMY 301 (683)
Q Consensus 256 AKPID~Lak~l~~~d~~die~~ePy~-i~~-GLt~~dLeeL~~DIk~y 301 (683)
..|||+|+.+=. |.+.+-+. |++ -+|..++.+|.+||+|.
T Consensus 34 ~dpi~~L~~~~~------i~fdd~~~~i~~h~~TT~EIk~~c~DLKVL 75 (159)
T PF11861_consen 34 EDPIDLLGSANE------IVFDDASKEILKHPLTTEEIKECCKDLKVL 75 (159)
T ss_pred CcHHHHHHHcCe------eeecchHHHHHcCCCCcHHHHHHHHHHHhc
Confidence 378999887522 22222222 333 37999999999999986
No 47
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=22.85 E-value=1.1e+03 Score=28.59 Aligned_cols=7 Identities=57% Similarity=1.488 Sum_probs=3.1
Q ss_pred CCCCCcc
Q 005676 564 RPRKPKY 570 (683)
Q Consensus 564 RPRKPrY 570 (683)
+|--|+|
T Consensus 927 ~p~~p~y 933 (940)
T KOG4661|consen 927 RPAQPRY 933 (940)
T ss_pred CCCCCCC
Confidence 3444444
No 48
>PTZ00121 MAEBL; Provisional
Probab=22.46 E-value=8.8e+02 Score=32.56 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 005676 220 ARERARAEFQDWEKKEEE 237 (683)
Q Consensus 220 ~Rere~~~~~eW~~kEd~ 237 (683)
.|..|.+.+.+|.++++.
T Consensus 1254 ~Rk~Eear~a~~A~r~aa 1271 (2084)
T PTZ00121 1254 IRKFEEARMAHFARRQAA 1271 (2084)
T ss_pred HHHHHHHHHHHHHHHhHh
Confidence 344455566666666654
No 49
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=57 Score=37.07 Aligned_cols=6 Identities=17% Similarity=-0.009 Sum_probs=2.5
Q ss_pred CChhhh
Q 005676 174 VPLEEF 179 (683)
Q Consensus 174 ls~~e~ 179 (683)
|+.+|.
T Consensus 361 LSe~E~ 366 (450)
T KOG3869|consen 361 LSEAER 366 (450)
T ss_pred ccHHHH
Confidence 344443
No 50
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=20.72 E-value=77 Score=38.70 Aligned_cols=6 Identities=67% Similarity=1.447 Sum_probs=2.4
Q ss_pred CCCCCC
Q 005676 590 HDNPPP 595 (683)
Q Consensus 590 ~DNPPP 595 (683)
|--|||
T Consensus 708 ~~~PPP 713 (894)
T KOG0132|consen 708 HGIPPP 713 (894)
T ss_pred CCCCCC
Confidence 334444
No 51
>PF10984 DUF2794: Protein of unknown function (DUF2794); InterPro: IPR021252 This is a bacterial family of proteins with unknown function.
Probab=20.71 E-value=1.2e+02 Score=27.41 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=16.9
Q ss_pred eEEeeccccCCCCCCCcEEEEeCCC
Q 005676 602 KFNIFYPDLVDKTKAPTYTIEKDGS 626 (683)
Q Consensus 602 KFNIFYPDLIDKtkaPty~ie~~~~ 626 (683)
-|+|| --.+..|.|+|++.+.
T Consensus 37 ~Fsvf----rr~~E~PlYrIeK~p~ 57 (85)
T PF10984_consen 37 VFSVF----RRAAERPLYRIEKRPK 57 (85)
T ss_pred EEEEe----eccCCCccEEEEeCcc
Confidence 39999 5557789999999863
No 52
>PRK14082 hypothetical protein; Provisional
Probab=20.60 E-value=1.1e+02 Score=26.46 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=35.4
Q ss_pred cchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhC-----CcccHHHHHHHH
Q 005676 356 LHSSIEADVRNLLDGKTHKELEALQTKIELQMRAG-----TAKVVEYWEAIL 402 (683)
Q Consensus 356 i~~sV~~DI~~il~gKS~eELeeLE~qI~~KL~Sg-----e~iDVeYWE~LL 402 (683)
|-+...--|.+-|.+-+|.+=+.|++.|+-||-.- -.-..+||+-||
T Consensus 14 ii~~FepkIkKsL~~T~yqeREDLeQElk~Ki~eK~~~~~~~e~PGF~efi~ 65 (65)
T PRK14082 14 LIENFSPMIKKKLSNTSYQEREDLEQELKIKIIEKADMLLCQEVPGFWEFIT 65 (65)
T ss_pred HHHHccHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcccCCcHHHhhC
Confidence 44566778889999999999999999999888421 123468998764
Done!