Query 005676
Match_columns 683
No_of_seqs 174 out of 227
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgw_C PRE-mRNA-splicing facto 97.3 0.00044 1.5E-08 68.4 7.8 80 598-678 115-223 (231)
2 3pgw_S U1-70K; protein-RNA com 88.9 0.15 5.1E-06 55.8 2.2 7 143-149 422-428 (437)
3 1xjs_A NIFU-like protein; SR17 26.7 30 0.001 32.3 2.4 53 363-415 75-129 (147)
4 1su0_B NIFU like protein ISCU; 23.3 56 0.0019 30.9 3.6 63 364-426 75-139 (159)
5 1jb0_J Photosystem 1 reaction 21.4 12 0.00041 28.3 -1.2 9 603-611 29-37 (41)
6 2wsc_J PSAJ, PSI-J, photosyste 18.6 18 0.00062 27.7 -0.7 10 602-611 28-37 (44)
7 2ayd_A WRKY transcription fact 18.1 1.1E+02 0.0038 25.8 3.9 53 575-637 15-67 (76)
8 2f3o_A PFLD, PFL2, pyruvate fo 17.1 3.6E+02 0.012 31.6 9.3 46 628-676 669-727 (776)
9 1r9d_A Glycerol dehydratase; r 16.6 4.9E+02 0.017 30.6 10.2 48 627-676 678-738 (787)
10 1xcr_A Hypothetical protein PT 14.9 42 0.0014 35.4 0.6 29 608-641 40-68 (316)
No 1
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00044 Score=68.36 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=56.6
Q ss_pred ccceeEEeeccccC---------CCCCCCcEEEEeCC-----CCCCeEEEEEecCCCCcceeeeeecccccccCCC----
Q 005676 598 VQGYKFNIFYPDLV---------DKTKAPTYTIEKDG-----SNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKK---- 659 (683)
Q Consensus 598 VQGYKFNIFYPDLI---------DKtkaPty~ie~~~-----~~~dtciIRF~AGPPYEDIAFrIVnrEWeyS~Kr---- 659 (683)
-+|.=|.|-||+=| +....|.+.|...= ...++--|.| |.-|||=|||+|-|+|=+.+.+.
T Consensus 115 Q~GLLFQVdYPEeIk~~~~~~~~~egi~PrhRIMSAyEQrVE~PKd~QYLVI-AAEPYETIAFKIPNrEIDk~e~~~~~~ 193 (231)
T 4dgw_C 115 SVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVI-AYEPFENIAIELPPNEILFSENNDMDN 193 (231)
T ss_dssp BCCEEEEEECCCSSSTTSCCSCSSTTCCCEEEEEETTCCSSCCCCCCEEEEE-ECSSSCCBCCEECSSCSSCCSCCSCCC
T ss_pred CeeEEEEEECChhhhhcccccccCCCCCcCEEEECHHHhcccCCCCCEEEEE-EeCCCCCceeEcCChhhcccccccccc
Confidence 58999999999854 45678999998651 1234555544 88999999999999999987742
Q ss_pred --------c-cccccc--cceeEEEEeecc
Q 005676 660 --------G-FKCTFE--RGILHVYFNFKR 678 (683)
Q Consensus 660 --------G-Fr~~Fd--rGILqL~FnFKr 678 (683)
| |-|.+| ...|.|-|.||.
T Consensus 194 ~~~svDElgKfwTyWD~DsK~FyLQffFK~ 223 (231)
T 4dgw_C 194 NNDGVDELNKKCTFWDAISKLYYVQFFFKQ 223 (231)
T ss_dssp CCCSSCHHHHHTEEEETTTTEEEEC-----
T ss_pred ccccccccCCEEEEecCCCCEEEEEEEEee
Confidence 3 344445 689999999985
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=88.90 E-value=0.15 Score=55.78 Aligned_cols=7 Identities=43% Similarity=0.729 Sum_probs=2.8
Q ss_pred ccCCCCC
Q 005676 143 GYSNDSN 149 (683)
Q Consensus 143 gYTn~dN 149 (683)
||-...|
T Consensus 422 ~~~~~~~ 428 (437)
T 3pgw_S 422 GYLAPEN 428 (437)
T ss_pred cccCCCc
Confidence 4443333
No 3
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=26.70 E-value=30 Score=32.28 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=36.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhCCcccHHHHHH--HHHHHHHHHHHHHHH
Q 005676 363 DVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEA--ILKRLHIYKAKACLK 415 (683)
Q Consensus 363 DI~~il~gKS~eELeeLE~qI~~KL~Sge~iDVeYWE~--LLk~L~v~kAka~L~ 415 (683)
=+..++.|||.+|..+|-....+.|.+++..+.+.|+. +|.-++.|.+|-..-
T Consensus 75 ~mte~v~Gkt~~Ea~~i~~~~~~ml~~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca 129 (147)
T 1xjs_A 75 MMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCA 129 (147)
T ss_dssp HHHHHHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCCCCchhhhchhhhhcCcccCcchhHHH
Confidence 35678999999999999999999998764333456665 344444445544333
No 4
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=23.29 E-value=56 Score=30.89 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=41.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhCCcccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005676 364 VRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEA--ILKRLHIYKAKACLKEIHAKMLRKHL 426 (683)
Q Consensus 364 I~~il~gKS~eELeeLE~qI~~KL~Sge~iDVeYWE~--LLk~L~v~kAka~L~~~h~~~l~~~l 426 (683)
+..++.|||++|..+|-.+..+-|.+++..+.+.|+. +|.-++.|.+|-..--+--..|+.-|
T Consensus 75 mte~v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~l~~l~gv~~~p~R~~Ca~La~~Al~~Al 139 (159)
T 1su0_B 75 MTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAI 139 (159)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhcCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHH
Confidence 5678999999999999999999888654333466664 34444445555544444444444443
No 5
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=21.44 E-value=12 Score=28.29 Aligned_cols=9 Identities=78% Similarity=1.527 Sum_probs=6.4
Q ss_pred EEeeccccC
Q 005676 603 FNIFYPDLV 611 (683)
Q Consensus 603 FNIFYPDLI 611 (683)
||-||||++
T Consensus 29 iNRffPD~L 37 (41)
T 1jb0_J 29 FNRFYPDLL 37 (41)
T ss_dssp HHHHSCCCS
T ss_pred HHHhCcccc
Confidence 577777775
No 6
>2wsc_J PSAJ, PSI-J, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_J* 2wsf_J* 2o01_J* 3lw5_J*
Probab=18.55 E-value=18 Score=27.68 Aligned_cols=10 Identities=40% Similarity=0.952 Sum_probs=7.9
Q ss_pred eEEeeccccC
Q 005676 602 KFNIFYPDLV 611 (683)
Q Consensus 602 KFNIFYPDLI 611 (683)
.||-||||+.
T Consensus 28 EiNRfFPD~L 37 (44)
T 2wsc_J 28 EINRFFPDAL 37 (44)
T ss_dssp SSTTTSCCCS
T ss_pred HHHHhCchHh
Confidence 3788999986
No 7
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=18.08 E-value=1.1e+02 Score=25.84 Aligned_cols=53 Identities=23% Similarity=0.543 Sum_probs=33.3
Q ss_pred cccccccccccccCCCCCCCCccccceeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEEEec
Q 005676 575 HTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHA 637 (683)
Q Consensus 575 hTGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIRF~A 637 (683)
--||-|-||=|-+=. .||-|. +| |---+| .-.-+=.|+++.+++.+.+|-..+
T Consensus 15 ~DGy~WRKYGQK~ik-gs~~PR---sY-YrCt~~-----gC~a~K~Ver~~~d~~~~~~tY~G 67 (76)
T 2ayd_A 15 NDGYRWRKYGQKSVK-GSPYPR---SY-YRCSSP-----GCPVKKHVERSSHDTKLLITTYEG 67 (76)
T ss_dssp CCSSCEEEEEEECCT-TCSSCE---EE-EEECST-----TCCCEEEEEECSSSTTEEEEEEES
T ss_pred CCCchhhhCcccccC-CCCCce---eE-eEcCCC-----CCCceeeEEEECCCCCEEEEEEcc
Confidence 469999999997743 455554 44 444443 333445688877666666665543
No 8
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl R hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus}
Probab=17.15 E-value=3.6e+02 Score=31.63 Aligned_cols=46 Identities=30% Similarity=0.574 Sum_probs=31.1
Q ss_pred CCeEEEEEecCCCCccee------eeeecccccccCCCc-------cccccccceeEEEEee
Q 005676 628 GETCIIRFHAGPPYEDIA------FKIVNKEWEYSHKKG-------FKCTFERGILHVYFNF 676 (683)
Q Consensus 628 ~dtciIRF~AGPPYEDIA------FrIVnrEWeyS~KrG-------Fr~~FdrGILqL~FnF 676 (683)
|-|++|...|.-||+... |+|.-.-= ...| .|..|+.|..||.||-
T Consensus 669 GptA~l~Svakl~~~~~~~G~~~n~k~~p~~l---~~~~~~~l~~li~~~f~~gg~hiq~NV 727 (776)
T 2f3o_A 669 GVTAVINSASKLSYENLPNGASLTINLSSDVL---GEKGDAVIEALIKSSMELGVMHVQFNI 727 (776)
T ss_dssp CHHHHHHHHTTSCGGGCTTCBCCEEEEEHHHH---TTCHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CHHHHHHHHhccChhhccCCeEEeEEEChhhh---cchhHHHHHHHHHHHHhhccccceEee
Confidence 458899998999997543 66653222 1112 3456889999999984
No 9
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=16.63 E-value=4.9e+02 Score=30.63 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=32.9
Q ss_pred CCCeEEEEEecCCCCccee------eeeecccccccCCCc-------cccccccceeEEEEee
Q 005676 627 NGETCIIRFHAGPPYEDIA------FKIVNKEWEYSHKKG-------FKCTFERGILHVYFNF 676 (683)
Q Consensus 627 ~~dtciIRF~AGPPYEDIA------FrIVnrEWeyS~KrG-------Fr~~FdrGILqL~FnF 676 (683)
+|-|++|..-|--||..+. |+|+-.-=.-. .| .|..|+.|..||.||-
T Consensus 678 ~GptA~l~SvaKl~~~~~~~G~~~n~k~~P~~l~~~--~g~~~l~~llr~yf~~gg~hiq~NV 738 (787)
T 1r9d_A 678 SGPTAACNSVSKLDHFIASNGTLFNQKFHPSALKGD--NGLMNLSSLIRSYFDQKGFHVQFNV 738 (787)
T ss_dssp SCHHHHHHHHTTSCTTTCTTCBCCEEEECGGGGCHH--HHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCHHHHHHhhhcCChhhccCCeEEEEEEchhhcCCc--hhHHHHHHHHHHHHHhccccceeec
Confidence 4568999999999998754 77753211100 22 3467899999999984
No 10
>1xcr_A Hypothetical protein PTD012; structural genomics, zinc-containing fold, splice variant, A buffer, metal binding protein; 1.70A {Homo sapiens} SCOP: d.290.1.2
Probab=14.89 E-value=42 Score=35.37 Aligned_cols=29 Identities=48% Similarity=0.827 Sum_probs=0.0
Q ss_pred cccCCCCCCCcEEEEeCCCCCCeEEEEEecCCCC
Q 005676 608 PDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPY 641 (683)
Q Consensus 608 PDLIDKtkaPty~ie~~~~~~dtciIRF~AGPPY 641 (683)
||| +++| |.+...+-.+++.|+-+ |||||
T Consensus 40 PDL---~~~P-f~l~~~GL~G~~~i~dv-GG~py 68 (316)
T 1xcr_A 40 PDL---TKEP-FTFPVKGICGKTRIAEV-GGVPY 68 (316)
T ss_dssp CCT---TSTT-TCCSSSCCBSSCEEEEE-ECGGG
T ss_pred CCC---CCCC-ccCcccCCCCCCeEEEe-CCccc
Done!