Query 005676
Match_columns 683
No_of_seqs 174 out of 227
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 04:18:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005676.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005676hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ogqa1 d.223.1.2 (A:371-494) 54.5 2.2 0.00016 37.1 1.8 33 637-675 35-67 (124)
2 d1su0b_ d.224.1.2 (B:) IscU ho 25.9 21 0.0015 30.4 3.4 48 364-411 70-119 (136)
3 d1wj2a_ g.79.1.1 (A:) WRKY DNA 22.3 27 0.002 27.3 3.0 52 574-635 10-61 (71)
4 d1wu9a1 a.245.1.1 (A:191-249) 20.1 1E+02 0.0075 22.9 5.9 13 311-323 23-39 (59)
5 d1r9pa_ d.224.1.2 (A:) NifU-li 17.3 82 0.006 26.5 5.4 55 356-411 65-124 (134)
6 d2fo3a1 d.20.1.1 (A:9-117) Put 16.4 75 0.0055 25.7 4.8 28 616-643 15-44 (109)
7 d1oywa1 a.4.5.43 (A:407-516) D 16.1 22 0.0016 29.2 1.2 46 362-407 27-72 (110)
8 d1sxjb2 c.37.1.20 (B:7-230) Re 15.0 15 0.0011 32.8 -0.2 10 559-568 5-14 (224)
9 d1jb0j_ f.23.18.1 (J:) Subunit 14.8 9.8 0.00072 26.8 -1.2 9 603-611 29-37 (41)
10 d1sxja2 c.37.1.20 (A:295-547) 13.3 18 0.0013 32.4 -0.2 10 558-567 3-12 (253)
No 1
>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.47 E-value=2.2 Score=37.08 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.9
Q ss_pred cCCCCcceeeeeecccccccCCCccccccccceeEEEEe
Q 005676 637 AGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFN 675 (683)
Q Consensus 637 AGPPYEDIAFrIVnrEWeyS~KrGFr~~FdrGILqL~Fn 675 (683)
|-||+ .|-|=||||.|.||=-+..+|..+++||
T Consensus 35 ~~P~~------~V~KWvDYS~KyGlgY~LSdgtvGV~FN 67 (124)
T d2ogqa1 35 CIPIF------WVSKWVDYSDKYGLGYQLCDNSVGVLFN 67 (124)
T ss_dssp GCCSC------CEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred cCCCE------EeEeeeecCCCceEEEEEcCCcEEEEEe
Confidence 55665 7899999999999999999999999997
No 2
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=25.93 E-value=21 Score=30.42 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=35.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhCCcccHHHHHHH--HHHHHHHHHH
Q 005676 364 VRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAI--LKRLHIYKAK 411 (683)
Q Consensus 364 I~~il~gKS~eELeeLE~qI~~KL~Sge~iDVeYWE~L--Lk~L~v~kAk 411 (683)
+..++.|||++++..|-.++...|.+++....+-|+.+ |.-++-|.+|
T Consensus 70 l~e~i~gk~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~v~~~p~R 119 (136)
T d1su0b_ 70 MTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQR 119 (136)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhcccCCchhhhhHHHHhhCCCcCcch
Confidence 46789999999999999999999987766566667643 3333444444
No 3
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.33 E-value=27 Score=27.29 Aligned_cols=52 Identities=21% Similarity=0.492 Sum_probs=27.5
Q ss_pred ccccccccccccccCCCCCCCCccccceeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEEE
Q 005676 574 VHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRF 635 (683)
Q Consensus 574 VhTGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIRF 635 (683)
+--||-|-||=| |.|+|=+|-=+|=-.....-.-+=.|+++.+++.+.++-.
T Consensus 10 ~dDGy~WRKYGQ----------K~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY 61 (71)
T d1wj2a_ 10 LDDGYRWRKYGQ----------KVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61 (71)
T ss_dssp CCSSSCBCCCEE----------ECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEE
T ss_pred CCCCcEecccCc----------eeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEE
Confidence 456999999999 4455544333332222222233344666665555544443
No 4
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.15 E-value=1e+02 Score=22.93 Aligned_cols=13 Identities=8% Similarity=0.731 Sum_probs=10.4
Q ss_pred hHHHH----HHHHHHhH
Q 005676 311 HVEYW----EALMVVCD 323 (683)
Q Consensus 311 n~~fW----~~m~vic~ 323 (683)
-++|| .++-++|+
T Consensus 23 ERdFYF~KLRdIEilcQ 39 (59)
T d1wu9a1 23 ERDFYFGKLRNIELICQ 39 (59)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 36887 78889997
No 5
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}
Probab=17.28 E-value=82 Score=26.53 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=33.9
Q ss_pred cchhHHHHHHHhcCCCCHHHHHHHH-HHHHHHHhhCCcccHHH----HHHHHHHHHHHHHH
Q 005676 356 LHSSIEADVRNLLDGKTHKELEALQ-TKIELQMRAGTAKVVEY----WEAILKRLHIYKAK 411 (683)
Q Consensus 356 i~~sV~~DI~~il~gKS~eELeeLE-~qI~~KL~Sge~iDVeY----WE~LLk~L~v~kAk 411 (683)
|..+.++=+..++.|||.++...|. ..|..-| +-.|.-+.. |++|.+-|.-|.++
T Consensus 65 is~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~l-~~~p~r~~Ca~L~~~al~~al~~y~~k 124 (134)
T d1r9pa_ 65 SAIASSSLITEWVKGKSLEEAGAIKNSQIAEEL-ELPPVKVHCSILAEDAIKAAIADYKAK 124 (134)
T ss_dssp SHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHHH-TCCSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHhCCHHHHHHhcchHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3334444456799999999999985 4465555 344444444 66666655555443
No 6
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Probab=16.37 E-value=75 Score=25.68 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=15.7
Q ss_pred CCcEEEEeCCCCCC--eEEEEEecCCCCcc
Q 005676 616 APTYTIEKDGSNGE--TCIIRFHAGPPYED 643 (683)
Q Consensus 616 aPty~ie~~~~~~d--tciIRF~AGPPYED 643 (683)
.|-+.+.+++++-- .|+|..-.|.|||+
T Consensus 15 ~~g~~~~~~~~~~~~w~~~i~gp~~tpy~g 44 (109)
T d2fo3a1 15 PINCTLDVHPNNIRIWIVKYVGLENTIYAN 44 (109)
T ss_dssp CTTEEEEECTTCTTEEEEEEECCTTSTTTT
T ss_pred CCCEEEEEcCCcccEEEEEEecCchhhhcC
Confidence 34566666554432 24444467778886
No 7
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=16.13 E-value=22 Score=29.22 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Q 005676 362 ADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHI 407 (683)
Q Consensus 362 ~DI~~il~gKS~eELeeLE~qI~~KL~Sge~iDVeYWE~LLk~L~v 407 (683)
.-|..||.|.+-..+.+..-+--.---.|...+..+|.+|+.+|.+
T Consensus 27 ~~ivdiL~Gs~~~kI~~~~h~~l~~yG~gk~~~~~~w~~li~qLv~ 72 (110)
T d1oywa1 27 GYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIH 72 (110)
T ss_dssp HHHHHHHHTCCCHHHHHHTGGGSTTTTTTTTSCHHHHHHHHHHHHH
T ss_pred ceehhhHhcCccHHHHHhCCCcCCcccCcCCCCHHHHHHHHHHHHH
Confidence 3577899998877776654322111225677899999999987763
No 8
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.01 E-value=15 Score=32.81 Aligned_cols=10 Identities=50% Similarity=1.188 Sum_probs=8.5
Q ss_pred ccccCCCCCC
Q 005676 559 WHDKYRPRKP 568 (683)
Q Consensus 559 W~dKYRPRKP 568 (683)
|.+||||++-
T Consensus 5 w~eKyrP~~~ 14 (224)
T d1sxjb2 5 WVEKYRPQVL 14 (224)
T ss_dssp HHHHTCCSSG
T ss_pred hHhHhCCCCH
Confidence 9999998764
No 9
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=14.85 E-value=9.8 Score=26.83 Aligned_cols=9 Identities=78% Similarity=1.527 Sum_probs=5.9
Q ss_pred EEeeccccC
Q 005676 603 FNIFYPDLV 611 (683)
Q Consensus 603 FNIFYPDLI 611 (683)
||=||||++
T Consensus 29 iNRFfPD~L 37 (41)
T d1jb0j_ 29 FNRFYPDLL 37 (41)
T ss_dssp HHHHSCCCS
T ss_pred HHhhCchhh
Confidence 566777764
No 10
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.34 E-value=18 Score=32.43 Aligned_cols=10 Identities=40% Similarity=0.963 Sum_probs=8.7
Q ss_pred cccccCCCCC
Q 005676 558 WWHDKYRPRK 567 (683)
Q Consensus 558 ~W~dKYRPRK 567 (683)
+|.|||||+.
T Consensus 3 lW~eky~P~~ 12 (253)
T d1sxja2 3 LWTVKYAPTN 12 (253)
T ss_dssp CHHHHTCCSS
T ss_pred ccccCcCCCC
Confidence 7999999875
Done!