BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005677
(683 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana
GN=OEP80 PE=1 SV=1
Length = 732
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/663 (73%), Positives = 542/663 (81%), Gaps = 35/663 (5%)
Query: 1 MPLRNDDVRFISSPLKIPPFRPEPPVPF----------FAQTLTKSKNSLSHLIYSLN-- 48
M NDDVRF SS ++I P+ F L+ ++NSL+ ++ SL
Sbjct: 1 MHCHNDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNR 60
Query: 49 -----ESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTG---------AVDTL--VNF 92
S R T+ L S + + GKS I + + T V+T+ ++
Sbjct: 61 HTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGLSS 120
Query: 93 PLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQP--HSVSRSDEERVLISEVLVRNKDGE 150
PLLC ASLSL + P +S S + + QQ HSVSR+ EERVLISEVLVR KDGE
Sbjct: 121 PLLCCASLSLTR-----PNESTQSVEGKDTVQQQKGHSVSRNAEERVLISEVLVRTKDGE 175
Query: 151 ELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVF 210
ELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCSC PVAVDTRDGIRL+F
Sbjct: 176 ELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIRLMF 235
Query: 211 QVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGM 270
QVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E ITSINGWYMERGLFG+
Sbjct: 236 QVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEAITSINGWYMERGLFGI 295
Query: 271 VSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSM 330
VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PETILRQLTTKKGQVYSM
Sbjct: 296 VSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPETILRQLTTKKGQVYSM 355
Query: 331 LQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGP 390
LQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERPSGGFSAGGGISSGITSGP
Sbjct: 356 LQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSGGFSAGGGISSGITSGP 415
Query: 391 LSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNS 450
LSGLIGSFAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWIEGDDKRTSR+IMVQNS
Sbjct: 416 LSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMVQNS 475
Query: 451 RTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKD 510
RTPG VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIFQH+GARDE+GNPIIKD
Sbjct: 476 RTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPIIKD 535
Query: 511 FYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARA 570
FYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGLPV PEWL FNRV RA
Sbjct: 536 FYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVTGRA 595
Query: 571 RKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEIS 630
RKG+ IGPAR L SLSGGHVVG FSPHEAF IGGTNSVRGYEEGAVGSGRSYVVGSGE+S
Sbjct: 596 RKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELS 655
Query: 631 FPM 633
FP+
Sbjct: 656 FPV 658
>sp|Q6H7M7|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
japonica GN=OEP80 PE=3 SV=2
Length = 665
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/501 (79%), Positives = 450/501 (89%), Gaps = 1/501 (0%)
Query: 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFC 193
EERVLISEV VR KDGE LER +LE A AL+ACR N+ALTVREVQEDVHR+++SG F
Sbjct: 91 EERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFR 150
Query: 194 SCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDE 253
SCMPVAVDTRDGIRLVF+VEPNQ+FHGLVCEGAN+LP+KF+EDAF D +GK++NIR LD+
Sbjct: 151 SCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDRHGKIINIRHLDQ 210
Query: 254 VITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRP 313
VI S+NGWY ERGL G+VS EILSGGI+RLQV+EAEVNNI+IRFLDR+TGEPT GKT+P
Sbjct: 211 VIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTVGKTQP 270
Query: 314 ETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPS 373
ETILR LTTKKGQ Y+ Q KRDVET+LTMGIMEDV+IIPQP GD+ KVDL+MN+VERPS
Sbjct: 271 ETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVMNLVERPS 330
Query: 374 GGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPW 433
GGFSAGGGISSGIT+GPLSGLIGSFAYSHRNVFGRN+KLN+SLERGQIDSIFR+NYTDPW
Sbjct: 331 GGFSAGGGISSGITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDPW 390
Query: 434 IEGDDKRTSRTIMVQNSRTPGTHVH-GNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGL 492
I+GD+KRTSRTIMVQNSRTPGT +H G+ PD+ +TIGRVTAG+E+SRP RPKWSGT+GL
Sbjct: 391 IDGDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGL 450
Query: 493 IFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQ 552
IFQH+GARD+KGNPII+DFY+S LTASG D+ L+AK ESVYT SGD+ S+MFVFN+EQ
Sbjct: 451 IFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQ 510
Query: 553 GLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYE 612
GLP+ PEWL FNRV AR R+G EIGPARLLLS SGGHV GNFSPHEAFAIGGTNSVRGYE
Sbjct: 511 GLPILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYE 570
Query: 613 EGAVGSGRSYVVGSGEISFPM 633
EGAVGSGRSY VGSGE+S M
Sbjct: 571 EGAVGSGRSYAVGSGEVSCRM 591
>sp|A2X208|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
indica GN=OEP80 PE=3 SV=1
Length = 665
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/501 (79%), Positives = 450/501 (89%), Gaps = 1/501 (0%)
Query: 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFC 193
EERVLISEV VR KDGE LER +LE A AL+ACR N+ALTVREVQEDVHR+++SG F
Sbjct: 91 EERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFR 150
Query: 194 SCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDE 253
SCMPVAVDTRDGIRLVF+VEPNQ+FHGLVCEGAN+LP+KF+EDAF D +GK++NIR LD+
Sbjct: 151 SCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDRHGKIINIRHLDQ 210
Query: 254 VITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRP 313
VI S+NGWY ERGL G+VS EILSGGI+RLQV+EAEVNNI+IRFLDR+TGEPT GKT+P
Sbjct: 211 VIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTVGKTQP 270
Query: 314 ETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPS 373
ETILR LTTKKGQ Y+ Q KRDVET+LTMGIMEDV+IIPQP GD+ KVDL+MN+VERPS
Sbjct: 271 ETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVMNLVERPS 330
Query: 374 GGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPW 433
GGFSAGGGISSGIT+GPLSGLIGSFAYSHRNVFGRN+KLN+SLERGQIDSIFR+NYTDPW
Sbjct: 331 GGFSAGGGISSGITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDPW 390
Query: 434 IEGDDKRTSRTIMVQNSRTPGTHVH-GNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGL 492
I+GD+KRTSRTIMVQNSRTPGT +H G+ PD+ +TIGRVTAG+E+SRP RPKWSGT+GL
Sbjct: 391 IDGDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGL 450
Query: 493 IFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQ 552
IFQH+GARD+KGNPII+DFY+S LTASG D+ L+AK ESVYT SGD+ S+MFVFN+EQ
Sbjct: 451 IFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQ 510
Query: 553 GLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYE 612
GLP+ PEWL FNRV AR R+G EIGPARLLLS SGGHV GNFSPHEAFAIGGTNSVRGYE
Sbjct: 511 GLPILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYE 570
Query: 613 EGAVGSGRSYVVGSGEISFPM 633
EGAVGSGRSY VGSGE+S M
Sbjct: 571 EGAVGSGRSYAVGSGEVSCRM 591
>sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1
Length = 809
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 121/504 (24%), Positives = 211/504 (41%), Gaps = 59/504 (11%)
Query: 182 DVHRIIDSGYFCSCMPVAVD--TRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFR 239
D R I+ G PV +D + ++ F +E+ + L V + +
Sbjct: 243 DRFRCINVGLMGQSKPVEMDPDMSEKEKIEFFRRQEREYKRRISSARPCLLPTSVHEEIK 302
Query: 240 DGYGKV--VNIRRLDEVITSINGWYMERGL-------FGMVSGVEILSGGIIRLQVAEAE 290
D + V+ R L ++ + WY E G FG ++ E++ +V E +
Sbjct: 303 DMLAEQGRVSARLLQKIRDRVQSWYHEEGYACAQVVNFGNLNTREVVC------EVVEGD 356
Query: 291 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTK--KGQVYSMLQGKRDVETVLTMGIMED 348
+ +SI++LD K G +G T + R+L + G +++ GK+ + + ++ + +
Sbjct: 357 ITKLSIQYLD-KLGNVVEGNTEGPVVQRELPKQLLPGHTFNIEAGKQALRNINSLALFSN 415
Query: 349 VSIIPQP-AGDTGK--VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFAYSH 402
+ + P+P + G V++ + +E+ S S I G P + G+ + H
Sbjct: 416 IEVNPRPDEMNEGSIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLASLQPGGTITFEH 475
Query: 403 RNVFGRNQKLNISLERG-----QIDSIFRINYTDPWIEGDDKRTSRTIMVQ--NSRTPGT 455
RN+ G N+ L S+ Q D F++ Y P+++G D +RT+ V NSR
Sbjct: 476 RNLQGLNRSLTGSVTTSNFLNPQDDLAFKMEYAHPYLDGVDNPRNRTLRVSCFNSRKLSP 535
Query: 456 HVHGNQ--PDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDE------KGNPI 507
G + S+ + R + + T GL+ + RDE G +
Sbjct: 536 VFTGGPGVDEVPSIWVDRAGVKANITENFSRQSKFTYGLVMEEIITRDESNHICSNGQRV 595
Query: 508 IKDFYSS----PLTASGKTNDEMLIAKF----ESVYTGSGDQGSSMFVFNMEQGLPVWPE 559
+ + S P T SG D M + ++ +G S +F ++QGL V
Sbjct: 596 LPNGAISADGPPTTLSGTGIDRMAFLQANITRDNTRFVNGTIVGSRNMFQVDQGLGVGSN 655
Query: 560 WLFFNRVNARARK-----GVEIG-----PARLLLSLSGGHVVGNFSPHEAFAIGGTNSVR 609
+ FFNR K VE G P L+L G VG+ ++AF +GG SVR
Sbjct: 656 FPFFNRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVR 715
Query: 610 GYEEGAVGSGRSYVVGSGEISFPM 633
GY G +G+ R+ + + EI P+
Sbjct: 716 GYNMGEIGAARNILELAAEIRIPI 739
>sp|P0C891|OEP80_PEA Outer envelope protein 80, chloroplastic (Fragments) OS=Pisum
sativum GN=OEP80 PE=1 SV=1
Length = 158
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 100/274 (36%), Gaps = 156/274 (56%)
Query: 283 RLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342
+LQV+EAEVNNISIRFLDRK
Sbjct: 11 KLQVSEAEVNNISIRFLDRK---------------------------------------- 30
Query: 343 MGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSH 402
SI+PQPA VDLI+ GLIGSFAYSH
Sbjct: 31 -------SIVPQPAQTA--VDLIVR-------------------------GLIGSFAYSH 56
Query: 403 RNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQP 462
R LN+SLER TPGT VHGNQ
Sbjct: 57 R--------LNLSLER---------------------------------TPGTLVHGNQD 75
Query: 463 DNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKT 522
NS+LTIGR WSGT GLIFQ Y+SPLTASG T
Sbjct: 76 GNSNLTIGR--------------WSGTAGLIFQR---------------YNSPLTASGNT 106
Query: 523 NDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPV 556
+ E L+AK S+ EQGLPV
Sbjct: 107 HTETLLAK------------SATLELTDEQGLPV 128
>sp|Q84Q83|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica
GN=TOC75 PE=2 SV=2
Length = 817
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 184/440 (41%), Gaps = 62/440 (14%)
Query: 246 VNIRRLDEVITSINGWYMERGL-------FGMVSGVEILSGGIIRLQVAEAEVNNISIRF 298
V+ R L + + WY G FG ++ E++ +V E ++ + +F
Sbjct: 318 VSARLLQRIRDHVQKWYHNEGFVCAQVVNFGNLNTSEVVC------EVVEGDITKVEYQF 371
Query: 299 LDRKTGEPTKGKTRPETILRQL--TTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA 356
D K G +G T+ I R+L + G ++++ GK+ ++ + ++ + ++ + P+P
Sbjct: 372 QD-KLGNFVEGNTQIPIIDRELPQQLRPGHIFNIGAGKQALKNINSLALFSNIEVNPRP- 429
Query: 357 GDTGK-----VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFAYSHRNVFGR 408
D K V++ + +E S S I G P I G+ ++ HRN++G
Sbjct: 430 -DETKEGGIVVEIKLKELEPKSAEVSTEWSIVPGREGRPTLASIQPGGTVSFEHRNIYGL 488
Query: 409 NQKL-----NISLERGQIDSIFRINYTDPWIEG-DDKRTSRTIMVQ--NSR--TPGTHVH 458
N+ + + +L Q D F++ Y P+++G DD+ +RT N+R +P
Sbjct: 489 NRSIVGSVTSSNLLNPQDDLSFKLEYVHPYLDGVDDRNKNRTFKTSCFNTRKLSPVFVAG 548
Query: 459 GNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIK--------- 509
N + + + RV + + T GL+ + RDE +
Sbjct: 549 PNMDEAPPVWVDRVGFKANITESFTRQSKFTYGLVVEEITTRDETNSICTHGSRAMPSGG 608
Query: 510 -DFYSSPLTASGKTNDEML-----IAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFF 563
P T SG D M I + + + G +F ++QGL + + FF
Sbjct: 609 LSMDGPPTTLSGTGIDRMAFLQANITRDNTEFVNGAVIGDRC-IFQLDQGLGIGSKNPFF 667
Query: 564 NRVNARARKGVEIG----------PARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEE 613
NR K V + PA L+L VG+ ++AF +GG SVRGY
Sbjct: 668 NRHQLTLTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGM 727
Query: 614 GAVGSGRSYVVGSGEISFPM 633
G +G+ R+ + + E+ P+
Sbjct: 728 GELGASRNVLEVASELRIPV 747
>sp|Q9STE8|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3
PE=1 SV=1
Length = 818
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/441 (24%), Positives = 181/441 (41%), Gaps = 65/441 (14%)
Query: 246 VNIRRLDEVITSINGWYMERGL-------FGMVSGVEILSGGIIRLQVAEAEVNNISIRF 298
V+ R L + + WY + G FG ++ E++ +V E ++ + I+F
Sbjct: 320 VSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTKEVVC------EVVEGDITQLVIQF 373
Query: 299 LDRKTGEPTKGKTRPETILRQLTT--KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA 356
D K G +G T+ + R+L ++G V+++ GK+ + + ++G+ ++ + P+P
Sbjct: 374 QD-KLGNVVEGNTQVPVVRRELPKQLRQGYVFNIEAGKKALSNINSLGLFSNIEVNPRPD 432
Query: 357 GDTGK---VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFAYSHRNVFGRNQ 410
V++ + +E+ S S I G P GS + HRN+ G N+
Sbjct: 433 EKNEGGIIVEIKLKELEQKSAEVSTEWSIVPGRGGAPTLASFQPGGSVTFEHRNLQGLNR 492
Query: 411 KLNISLERG-----QIDSIFRINYTDPWIEGDDKRTSRTIMVQ--NSR------TPGTHV 457
L S+ Q D F++ Y P+++G +RT NSR T G V
Sbjct: 493 SLMGSVTTSNFLNPQDDLSFKLEYVHPYLDGVYNPRNRTFKTSCFNSRKLSPVFTGGPGV 552
Query: 458 HGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDE------KGNPIIKDF 511
P + + R + + T GL+ + RDE G ++
Sbjct: 553 EEVPP----IWVDRAGVKANITENFTRQSKFTYGLVMEEITTRDESSHIAANGQRLLPSG 608
Query: 512 YSS----PLTASGKTNDEML-----IAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLF 562
S P T SG D M I + + + G VF ++QGL + ++ F
Sbjct: 609 GISADGPPTTLSGTGVDRMAFLQANITRDNTKFVNGAVVGQRT-VFQVDQGLGIGSKFPF 667
Query: 563 FNRVNARARKGVEI----------GPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYE 612
FNR K +++ P L+L G VG+ ++AF +GG SVRGY
Sbjct: 668 FNRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYN 727
Query: 613 EGAVGSGRSYVVGSGEISFPM 633
G +G+ R+ EI P+
Sbjct: 728 MGELGAARNIAEVGAEIRIPV 748
>sp|Q9K1H0|BAMA_NEIMB Outer membrane protein assembly factor BamA OS=Neisseria
meningitidis serogroup B (strain MC58) GN=bamA PE=1 SV=1
Length = 797
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 138/379 (36%), Gaps = 85/379 (22%)
Query: 310 KTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQP-AGDTGKVDLIMNV 368
KTR E + R+L + Y + +R E V +G ++V P AG KVDL M++
Sbjct: 359 KTRDEVVRRELRQMESAPYDTSKLQRSKERVELLGYFDNVQFDAVPLAGTPDKVDLNMSL 418
Query: 369 VERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRIN 428
ER +G +S+G +GL+ S S N+FG + + R + ++
Sbjct: 419 TERSTGSLD----LSAGWVQD--TGLVMSAGVSQDNLFGTGKSAALRASRSKTTLNGSLS 472
Query: 429 YTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGN--QPDNSSLTIGRVT-----AGMEFSRP 481
+TDP+ D + G V+G P +S +I + AG+ S P
Sbjct: 473 FTDPYFTAD------------GVSLGYDVYGKAFDPRKASTSIKQYKTTTAGAGIRMSVP 520
Query: 482 IRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQ 541
+ GL+ +H P Y+ + GKT+ + + G +
Sbjct: 521 VTEYDRVNFGLVAEHLTVNTYNKAP---KHYADFIKKYGKTDGT------DGSFKGWLYK 571
Query: 542 GSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIG-PARLLLSLSGGHVVGNFSP---- 596
G+ + N +WP + VNA EI P L S H F P
Sbjct: 572 GTVGWGRNKTDS-ALWPTRGYLTGVNA------EIALPGSKLQYYSATHNQTWFFPLSKT 624
Query: 597 -----------------------HEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPM 633
E F GG SVRGYE G +G P
Sbjct: 625 FTLMLGGEVGIAGGYGRTKEIPFFENFYGGGLGSVRGYESGTLG--------------PK 670
Query: 634 VCDDYQISVLY-GSKSENI 651
V D+Y + Y G+K N+
Sbjct: 671 VYDEYGEKISYGGNKKANV 689
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 280 GIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVET 339
GI L +A+ + +I + L R T P T+ L K G Y+ G +++
Sbjct: 14 GISPLALADFTIQDIRVEGLQR---------TEPSTVFNYLPVKVGDTYNDTHGSAIIKS 64
Query: 340 VLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGG 375
+ G +DV + +T L++ V+ERP+ G
Sbjct: 65 LYATGFFDDVRV------ETADGQLLLTVIERPTIG 94
>sp|Q5IZC8|TC754_ARATH Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4
PE=2 SV=1
Length = 396
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 547 VFNMEQGLPVWPEWLFFNR-----VNARARKGVEIG-----PARLLLSLSGGHVVGNFSP 596
+F ++QGL + + FNR + K VE G P L+L G +G+
Sbjct: 230 IFQVDQGLGIGNNFPLFNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCIGDLPS 289
Query: 597 HEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPM 633
++ FA+GG NSVRGY G +G+ ++ + EI P+
Sbjct: 290 YDVFALGGPNSVRGYSMGELGAAKNILELGAEIRIPV 326
>sp|C6V5K2|BAMA_NEORI Outer membrane protein assembly factor BamA OS=Neorickettsia
risticii (strain Illinois) GN=bamA PE=3 SV=1
Length = 738
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 301 RKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTG 360
RK +T+ I R++ + +Y + +L +G ++V I + D
Sbjct: 335 RKINISGNTRTKDTVIRREMLLSENDLYQPSKVADSRRRILNLGFFDEV-YIEEHKIDGQ 393
Query: 361 KVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ 420
+ L + V ERP+G + GG S + G G+F++ N+FG + +L + L++
Sbjct: 394 NLILEVRVKERPTGTLNLSGGYGSDV------GFFGNFSFVENNLFGTSDRLVVELQKAS 447
Query: 421 IDSIFRINY 429
+ S + + +
Sbjct: 448 LGSNYSMEF 456
>sp|P46278|CCNB2_MEDSV G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia PE=2
SV=1
Length = 434
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 150 EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCM-PVAVDTR 203
EE+E +D+E E + + +C AN++L V E ED+H + C+ P +D +
Sbjct: 147 EEVEMEDIEGEMILDIDSCDANNSLAVVEYIEDLHAYYRKIEYLGCVSPTYMDEQ 201
>sp|Q8K9S5|BAMA_BUCAP Outer membrane protein assembly factor BamA OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=bamA PE=3 SV=1
Length = 799
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 67/338 (19%), Positives = 128/338 (37%), Gaps = 53/338 (15%)
Query: 311 TRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGK-VDLIMNVV 369
T+ + R++ +G+ +++ + ++++ + + D+++ + + VD+ +
Sbjct: 360 TQDIVLRREMKQIEGEWFNLKLIELGIKSLEKLKFLSDITVQKEILFNKENGVDITYTLK 419
Query: 370 ERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINY 429
E+P+G + G G G SGL + + S N+FG L S+ + I+
Sbjct: 420 EQPTGTLNFGLG------YGRDSGLSFNASISQDNLFGSGNSLKASIIKNDNQKYADISI 473
Query: 430 TDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGME--FSRPIRPKWS 487
P+ D I + + NS I + T+G E S I
Sbjct: 474 MHPYFIDDGTNLDTRIFYNDFKYNI---------NSFYNIVKTTSGFESDLSFLINAFNR 524
Query: 488 GTVGLIFQHSGA--RDEK-----GNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTG-SG 539
+G + H+G ++EK GN F + L N + + Y SG
Sbjct: 525 VNIGFGYTHNGLLNKEEKFFSKNGNKSSDKFLKTSLVDDFTLNYSLTHDTLKYFYFPISG 584
Query: 540 DQ----------GSS----MFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSL 585
+Q GS F+F+ EQ +P+ E F + RA G + +L
Sbjct: 585 NQTYISGKNTIPGSDNKFYKFLFDSEQYIPLEEEKKFIFLTHIRAGIGNSLNKEKLPF-- 642
Query: 586 SGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYV 623
+E F +N++RG+ +G + Y+
Sbjct: 643 -----------YENFHAIDSNNIRGFRANTIGPKKIYI 669
>sp|Q729H8|BAMA_DESVH Outer membrane protein assembly factor BamA OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=bamA PE=3 SV=1
Length = 791
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 46/114 (40%)
Query: 155 KDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEP 214
K L+ + + + R + + +++ RI D GYF DG LV+ V
Sbjct: 70 KVLDPDVVLMRLSTRKGDPIDPAAINKEIKRIWDLGYFSDVQASVEQGGDGTVLVYTVTE 129
Query: 215 NQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLF 268
+V EG++ + + A G V+N + L + + + Y + G +
Sbjct: 130 KPRIDNIVIEGSDKVGHDDILAAMSSKTGSVLNDKLLAQDLQKVTELYRKEGFY 183
>sp|P30278|CCNB2_MEDSA G2/mitotic-specific cyclin-2 (Fragment) OS=Medicago sativa PE=2
SV=1
Length = 328
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 150 EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCM-PVAVDTR 203
EE+E +D+E E + + +C AN++L V E ED+H + C+ P +D +
Sbjct: 41 EEVEMEDIEGEMILDIDSCDANNSLAVVEYIEDLHAYYRKIEYLGCVSPTYMDEQ 95
>sp|P34616|CADH3_CAEEL Cadherin-3 OS=Caenorhabditis elegans GN=cdh-3 PE=2 SV=1
Length = 3343
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 251 LDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGK 310
LD + + ++ ++ +FG +EI G+I L E N +IR D + P K
Sbjct: 1390 LDAIASDVSFSIVDGDVFG---NLEIEDSGVISLNSIPNESFNATIRIYDNR--PPFKVH 1444
Query: 311 TRPETILRQLTTKKGQV------YSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDL 364
TI Q+T K V + M G DV ++ I+ I+PQ D+ K+D
Sbjct: 1445 FDDVTIEFQVTQKLRAVTCEDAEFWMFFGNEDVGMLIASEIVT-WRIVPQIGSDSFKIDP 1503
Query: 365 IMNVVE 370
I +++
Sbjct: 1504 ITGIIQ 1509
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,725,936
Number of Sequences: 539616
Number of extensions: 11184051
Number of successful extensions: 29481
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 29429
Number of HSP's gapped (non-prelim): 53
length of query: 683
length of database: 191,569,459
effective HSP length: 124
effective length of query: 559
effective length of database: 124,657,075
effective search space: 69683304925
effective search space used: 69683304925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)