Query 005677
Match_columns 683
No_of_seqs 290 out of 2241
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:04:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03138 Protein TOC75; Provis 100.0 3.4E-57 7.3E-62 510.1 57.5 510 122-647 133-740 (796)
2 TIGR00992 3a0901s03IAP75 chlor 100.0 4.4E-56 9.6E-61 515.0 55.4 514 137-676 108-706 (718)
3 COG4775 Outer membrane protein 100.0 5.7E-56 1.2E-60 510.3 53.3 510 130-674 165-744 (766)
4 PRK11067 outer membrane protei 100.0 1E-52 2.2E-57 500.8 58.0 505 130-676 168-783 (803)
5 TIGR03303 OM_YaeT outer membra 100.0 1.7E-50 3.6E-55 478.7 57.8 510 130-676 143-721 (741)
6 COG0729 Outer membrane protein 100.0 5.2E-32 1.1E-36 304.0 35.1 452 187-678 80-577 (594)
7 COG2831 FhaC Hemolysin activat 100.0 2E-29 4.4E-34 283.4 42.0 397 219-647 76-495 (554)
8 TIGR03303 OM_YaeT outer membra 99.9 6.3E-20 1.4E-24 217.7 42.7 229 129-373 61-321 (741)
9 PF01103 Bac_surface_Ag: Surfa 99.9 1.3E-20 2.7E-25 200.5 25.5 253 404-676 1-303 (323)
10 PRK11067 outer membrane protei 99.9 3.6E-20 7.9E-25 221.4 30.1 232 129-373 84-346 (803)
11 PF03865 ShlB: Haemolysin secr 99.9 3.8E-19 8.2E-24 195.1 33.0 332 319-679 10-381 (404)
12 COG4775 Outer membrane protein 99.9 1.4E-18 3.1E-23 201.2 35.6 232 129-376 84-346 (766)
13 KOG2602 Predicted cell surface 99.8 1.6E-19 3.5E-24 189.0 10.8 310 288-635 35-373 (457)
14 PF08479 POTRA_2: POTRA domain 98.7 6.7E-08 1.5E-12 80.3 8.8 72 218-289 3-76 (76)
15 PF07244 Surf_Ag_VNR: Surface 98.7 7.1E-08 1.5E-12 80.4 8.3 72 137-215 1-78 (78)
16 PF07244 Surf_Ag_VNR: Surface 98.6 3.8E-07 8.3E-12 75.9 9.7 73 217-289 2-78 (78)
17 PLN03138 Protein TOC75; Provis 98.5 7.6E-07 1.6E-11 102.8 12.7 150 130-288 220-425 (796)
18 TIGR00992 3a0901s03IAP75 chlor 98.2 1.1E-05 2.3E-10 95.1 13.9 155 130-294 173-353 (718)
19 COG2831 FhaC Hemolysin activat 98.1 0.00053 1.2E-08 78.3 22.7 156 133-299 69-230 (554)
20 COG0729 Outer membrane protein 97.0 0.0065 1.4E-07 69.7 12.8 129 135-272 114-252 (594)
21 PF08479 POTRA_2: POTRA domain 96.2 0.024 5.2E-07 46.9 8.0 70 138-215 2-76 (76)
22 PF08478 POTRA_1: POTRA domain 90.3 0.94 2E-05 36.3 6.3 68 290-371 2-69 (69)
23 PRK05529 cell division protein 81.8 7.7 0.00017 40.0 9.2 72 288-373 60-131 (255)
24 PF08478 POTRA_1: POTRA domain 61.6 16 0.00035 28.9 4.7 67 138-214 2-68 (69)
25 COG1589 FtsQ Cell division sep 60.9 25 0.00053 36.6 7.1 71 289-373 60-130 (269)
26 PF10082 DUF2320: Uncharacteri 53.5 3.2E+02 0.007 29.5 16.9 27 473-499 298-324 (381)
27 PF11854 DUF3374: Protein of u 49.7 2.1E+02 0.0045 33.7 12.9 39 463-501 562-600 (637)
28 PF10437 Lip_prot_lig_C: Bacte 49.4 14 0.00029 31.1 2.4 63 277-349 13-77 (86)
29 PRK05529 cell division protein 45.5 1.1E+02 0.0024 31.5 8.9 73 134-219 58-133 (255)
30 PF15603 Imm45: Immunity prote 40.6 52 0.0011 27.6 4.4 61 207-267 9-77 (82)
31 PRK10775 cell division protein 29.9 1.8E+02 0.0038 30.5 7.5 70 290-373 57-128 (276)
32 TIGR03509 OMP_MtrB_PioB decahe 29.8 6.9E+02 0.015 29.5 13.3 35 464-498 575-609 (649)
33 PF03349 Toluene_X: Outer memb 29.0 7.9E+02 0.017 26.8 13.4 127 375-519 210-374 (427)
34 PF10437 Lip_prot_lig_C: Bacte 28.9 1.3E+02 0.0028 25.1 5.2 54 203-258 15-68 (86)
35 COG1589 FtsQ Cell division sep 26.9 1.4E+02 0.0031 30.9 6.2 119 136-267 59-191 (269)
36 TIGR00545 lipoyltrans lipoyltr 24.4 2.7E+02 0.0059 29.8 7.9 53 279-341 257-311 (324)
37 TIGR02876 spore_yqfD sporulati 22.9 2.5E+02 0.0054 30.9 7.3 68 138-216 104-175 (382)
38 TIGR02876 spore_yqfD sporulati 22.2 3.4E+02 0.0074 29.8 8.3 68 288-372 102-175 (382)
39 PF04338 DUF481: Protein of un 21.9 7.1E+02 0.015 23.9 22.3 32 563-595 160-191 (210)
40 PF13505 OMP_b-brl: Outer memb 20.6 6.3E+02 0.014 22.7 12.7 30 468-497 127-156 (176)
No 1
>PLN03138 Protein TOC75; Provisional
Probab=100.00 E-value=3.4e-57 Score=510.09 Aligned_cols=510 Identities=19% Similarity=0.305 Sum_probs=406.7
Q ss_pred ccCCCCccccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCCCceEeEEEE-
Q 005677 122 KAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAV- 200 (683)
Q Consensus 122 ~~~~~~~~~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~V~~~~- 200 (683)
+.-+++.+...--++++|++|+|.|. +.-..-.+++.+.+.| .+++|..|+...|++|+++|++.|||+ .|.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~vs~v~~~~~--~~~~~~~~e~~l~~~i-~~kpG~v~trsqLq~dv~~I~~tG~F~-~V~~~v~ 208 (796)
T PLN03138 133 VNITVPLSKLSGFKRYKVSEIEFFDR--RRNTTVGTEDSFFEMV-TLRPGGVYTKAQLQKELETLASCGMFE-KVDLEGK 208 (796)
T ss_pred ccceEechhcCCcceEEEEEEEEecc--ccCCCcchHHHHHHHH-hcCCCCccCHHHHHHHHHHHHhcCCce-EEEEEEE
Confidence 34455666778889999999999882 1111112333333345 589999999999999999999999999 887654
Q ss_pred -eCCCcEEEEEEEeeCCc--eEEEE------------EecccCCChhHHHHhhccCC-----------------------
Q 005677 201 -DTRDGIRLVFQVEPNQE--FHGLV------------CEGANVLPTKFVEDAFRDGY----------------------- 242 (683)
Q Consensus 201 -~~~~~v~v~~~V~eG~~--~~~I~------------~~G~~~~~~~~L~~~~~~~~----------------------- 242 (683)
..++.+.|+|.|+||+. +++|+ |+||+.+++.+|.+.+..++
T Consensus 209 ~~~dg~v~V~~~i~Eg~~~~I~~I~~i~~~~~~~~~~~~GN~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~ 288 (796)
T PLN03138 209 TKPDGTLGLTISFTESTWQSADSFRCINVGLMSQSKPIEMDEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREV 288 (796)
T ss_pred eCCCCeEEEEEEEEeCCceeeeeeeecccccccccceeeCCcccCHHHHHHHhhccccccccccccccccccchHHHHHH
Confidence 35678999999999997 45888 99999988888777665433
Q ss_pred ------CccccHHHHHHHHHHHHHHHHHCCc-eeEeecEEEeeCcEEEEEEEEEEEeeEEEEEcccCCCCCCCCCCCHHH
Q 005677 243 ------GKVVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPET 315 (683)
Q Consensus 243 ------G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~~~~~~g~v~l~V~e~~I~~I~I~~~~~~~Gn~~~~~t~~~v 315 (683)
...|+.++|++++++|+++|.++|| +++|.+...++++.|+++|.|+.+..|+|++.++. |++.+.+|++++
T Consensus 289 f~~~~~~gklN~e~Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~dri-g~~i~GNTrD~V 367 (796)
T PLN03138 289 LGMLRDQGKVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQDKL-GNVVEGNTQLPI 367 (796)
T ss_pred HhhhccCCcCCHHHHHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEecccc-cccccCCccCeE
Confidence 1259999999999999999999999 89999877777788999999999999999865532 332334579999
Q ss_pred HHHHcc--cCCCCCCChHhHHHHHHHHHhCCCccceeeeeecC-CCCCeEEEEEEEEE--cCCeeEEEeeeecCCCCCC-
Q 005677 316 ILRQLT--TKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDTGKVDLIMNVVE--RPSGGFSAGGGISSGITSG- 389 (683)
Q Consensus 316 I~r~l~--~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~-~~~g~v~l~i~V~E--~~~~~~~~g~gy~s~~~~~- 389 (683)
|+|+|. +++|++||..++++++++|+++|+|++|++.+.|. ..++.++|+|+|+| +++..++++++|+...+..
T Consensus 368 IRREL~~~lkeGd~fN~~~l~~slqRL~~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~P 447 (796)
T PLN03138 368 IDRELPKQLRQGHIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRP 447 (796)
T ss_pred EeeecccccCCCcccCHHHHHHHHHHHHhCCCCceeEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCC
Confidence 999997 59999999999999999999999999999999885 46899999999999 5556666666665421100
Q ss_pred --CCcccEEEEEEEEccCCcCCcEEEEEEEe-----cceeeEEEEEEEccccCC--CCCceEEEEEEEeeecCCcccCCC
Q 005677 390 --PLSGLIGSFAYSHRNVFGRNQKLNISLER-----GQIDSIFRINYTDPWIEG--DDKRTSRTIMVQNSRTPGTHVHGN 460 (683)
Q Consensus 390 --~~~G~~~~~~l~~~NlfG~g~~l~~~~~~-----~~~~~~~~l~y~~P~~~~--~~~~~s~~~~~~~~~~~~~i~~~~ 460 (683)
...|+.+.++|+|+||+|+|+++.++++. ++....+.++|++||+.+ ++.++++++++|.++....+|.+.
T Consensus 448 sl~S~g~~Gtvs~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~ 527 (796)
T PLN03138 448 TLASIQPGGTVSFEHRNIQGLNRSILGSVTSSNLLNPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGG 527 (796)
T ss_pred ccccccceeEEEEeccccccccceEEEEEEeecccCCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCC
Confidence 13567889999999999999999999998 357889999999999988 555689999999888765555543
Q ss_pred C--CCCCceEEEEEEEEEEEEeecCCCeEEEEEEEEEEEEeecCCCCceec-------------------------cccC
Q 005677 461 Q--PDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIK-------------------------DFYS 513 (683)
Q Consensus 461 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gl~~~~~~~~~~~~~~~~~-------------------------~~~~ 513 (683)
. .........+.++++.+++|+...+.+++++.|+++...|..+..... +...
T Consensus 528 ~~~~~~~~~~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~ 607 (796)
T PLN03138 528 PGVDEVPPIWVDRAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAF 607 (796)
T ss_pred CCcccCCcceEeecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhh
Confidence 1 122344578899999999999888778999999999887766532210 1122
Q ss_pred CceeeccccCCceeEEEeeEEEccCCCCCCceeEEeeeeccCcCCCcceEEEEEEEEEEEEEec----------CceEEE
Q 005677 514 SPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIG----------PARLLL 583 (683)
Q Consensus 514 ~~l~~~~d~rD~~~~P~~G~~~~~~G~~G~~~~~~~~e~~~~~~~~~~~f~k~~~~~~~y~~l~----------~~~l~l 583 (683)
+.+.+++|++|++..|+.| .. +.+++||++|++.++..|+|+.+++++|+|+. +.+|++
T Consensus 608 ~~~~~trd~~~~~~~pt~G----------~~-~~~~~EQ~lpvg~~~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~ 676 (796)
T PLN03138 608 LQANITRDNTKFVNGAVVG----------DR-HIFQVDQGLGIGSKFPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVL 676 (796)
T ss_pred eeeeeEeccCCCCCCCCcc----------ce-EEEEeeeeccccCCCCceEEEEEEEEEEEeeccccccccCCCCcEEEE
Confidence 3446678888888888742 33 78899999999888899999999999999982 347999
Q ss_pred EEeeeeeccCCCccCccccCCCCccccccCCCccccceEEEEeEEEEEecccCCceeEEEecCC
Q 005677 584 SLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMVCDDYQISVLYGSK 647 (683)
Q Consensus 584 r~~~G~~~g~lP~~erF~lGG~~svRGy~~~~lgpG~~~~~~s~ElR~pl~~~~~g~g~~~g~~ 647 (683)
++++|++.|++|++|.|.|||++|||||.+++++.|++++.+++|||+|+......++++|+.+
T Consensus 677 ~~~aG~~~GdLPpYEAF~LGG~nSVRGY~eG~lg~gRs~l~asaEyRfPi~~~~g~~F~D~Gsd 740 (796)
T PLN03138 677 HGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILEVAAELRIPVRNTHVYAFAEHGTD 740 (796)
T ss_pred EEeccceecCCCcHHhcccCCCCcccCcccCcccccceeEEEEEEEEeeeccceEEEEEEeccc
Confidence 9999999999999999999999999999999999899999999999999954211244555444
No 2
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=100.00 E-value=4.4e-56 Score=514.96 Aligned_cols=514 Identities=23% Similarity=0.324 Sum_probs=409.2
Q ss_pred ceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCCCceEeEEEEeCCCcEEEEEEEeeCC
Q 005677 137 VLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQ 216 (683)
Q Consensus 137 ~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~V~~~~~~~~~v~v~~~V~eG~ 216 (683)
-+|++|.+.|. +.+|+..+.+.| .+++|..++...+++|+++|++.|||..+-....+.+.+++|+|+|.|+|
T Consensus 108 ~l~~e~~~~~~------~~~~~~~~~~~~-~~~~G~~~t~~~~~~d~~~i~~tG~F~~V~~~~~~~~~Gv~v~~~V~enP 180 (718)
T TIGR00992 108 QLQKELEVLAT------CGMFEKVDYEGK-TTQDGRLGTTISFAESVWAIADRFRCINVGLMPQSKPLEMDVDMEVKEKP 180 (718)
T ss_pred heeeeeeeecC------cHHHHHHHhhcc-ccCCCCcccHHHHHHHHHHHHHcEEeeeeEEeeccCCCceEEEEEEecCC
Confidence 48999999994 344777666666 58999999999999999999999999875555556778899999999999
Q ss_pred ceEE-EEEec--------ccCCChhHHHHhhccCCC-ccccHHHHHHHHHHHHHHHHHCCc-eeEeecEEEeeCcEEEEE
Q 005677 217 EFHG-LVCEG--------ANVLPTKFVEDAFRDGYG-KVVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQ 285 (683)
Q Consensus 217 ~~~~-I~~~G--------~~~~~~~~L~~~~~~~~G-~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~~~~~~g~v~l~ 285 (683)
.+++ |+++| +.+++.+.+++++..+.| ++++...|++++++|+++|+++|| +|+|.......++.|++.
T Consensus 181 ~~~~~v~~~g~~~~~~~~~~~lp~~~l~e~~~~~~G~~~ln~~~L~~~~~~I~~~Y~~~GY~~A~V~~~~~~~~~~V~l~ 260 (718)
T TIGR00992 181 EFTRRLEIRYKRRIAEARPCLLPQEVVDETFGMLYGQGIVSARLLQEIRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCE 260 (718)
T ss_pred EEEEEEEEeecccccccccccCCHHHHHHHhccccCCeecCHHHHHHHHHHHHHHHHHCCceeEEEeccCcCCCCEEEEE
Confidence 9997 99964 456788999999999999 999999999999999999999999 899876543444589999
Q ss_pred EEEEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcc--cCCCCCCChHhHHHHHHHHHhCCCccceeeeeecCC-CCCeE
Q 005677 286 VAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--TKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAG-DTGKV 362 (683)
Q Consensus 286 V~e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~--~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~-~~g~v 362 (683)
|.|++|++|.|...+. .|++...++++.+|+|++. +++|++|+.++|++++++|+++++|++|.+.+.|.. .++.+
T Consensus 261 V~EG~i~~I~V~~i~~-~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~Le~~~~rL~~lg~F~~V~V~~~p~~~~~g~v 339 (718)
T TIGR00992 261 VVEGDITNLQIQFFDK-LGNVVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNINSLGLFSNIEVNPRPDEMNEGEI 339 (718)
T ss_pred EeccceeEEEEEEecc-cCccccCccchHHHHHHHHhccCCCCcCCHHHHHHHHHHHHcCCCcccceeeccCCCCCCCeE
Confidence 9999999999863221 1663334789999999999 999999999999999999999999999999988865 78999
Q ss_pred EEEEEEEEcCCe--------eEEEeee---ecCCCCCCCCcccEEEEEEEEccCCcCCcEEEEEEEec-----ceeeEEE
Q 005677 363 DLIMNVVERPSG--------GFSAGGG---ISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERG-----QIDSIFR 426 (683)
Q Consensus 363 ~l~i~V~E~~~~--------~~~~g~g---y~s~~~~~~~~G~~~~~~l~~~NlfG~g~~l~~~~~~~-----~~~~~~~ 426 (683)
+|.|+|+|++++ .+.+|+| |++. .|+.+.++|+++||||.|++|.++++.+ +..+.+.
T Consensus 340 ~V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss~------~G~~g~i~~~~rNl~G~g~~l~~~~~~s~~~~~~~~~~~~ 413 (718)
T TIGR00992 340 IVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLAS------SQPGGTITFEHRNLQGLNRSLGGSVTTSNFLNPQDDLLFK 413 (718)
T ss_pred EEEEEEEECCCCceeeeccccccccCCCcccccc------cceeEEeeEEeccCcccCcEEEEEEEeccccCCCcceEEE
Confidence 999999999988 5566666 6654 7899999999999999999999999998 7889999
Q ss_pred EEEEccccCCC--CCceEEEEEEEeeecCCcccCCCC--CCCCceEEEEEEEEEEEEeecCCCeEEE------EEEEEEE
Q 005677 427 INYTDPWIEGD--DKRTSRTIMVQNSRTPGTHVHGNQ--PDNSSLTIGRVTAGMEFSRPIRPKWSGT------VGLIFQH 496 (683)
Q Consensus 427 l~y~~P~~~~~--~~~~s~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~gl~~~~ 496 (683)
++|++||+.++ +.+.++++++|+++.....+.... .....|...+.++++++++|+.+++++. .++.|+.
T Consensus 414 lsy~~P~i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~~r~G~~~~~~r~l~~~~~~~~~~~~~~~~~~~~ 493 (718)
T TIGR00992 414 VEYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWVDRAGVKANITENFARQSKFTYGLVMEEIFTRDE 493 (718)
T ss_pred EEEecCccCCCCCCccceEEEEEEEeccccccccCCcccccCCCceEEEEEEEEEEeeccCcccccccCeEEEEEeeeee
Confidence 99999999875 456788888877765432222111 1224588889999999999998665443 3334444
Q ss_pred EEeecCCCC-------------ce------eccccCCceeeccccCCceeEEEeeEEEccCCCCCCceeEEeeeeccCcC
Q 005677 497 SGARDEKGN-------------PI------IKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVW 557 (683)
Q Consensus 497 ~~~~~~~~~-------------~~------~~~~~~~~l~~~~d~rD~~~~P~~G~~~~~~G~~G~~~~~~~~e~~~~~~ 557 (683)
....+..+. +. ......+.++++||++|++++|+.| +. +.++.+++.+++
T Consensus 494 ~~~~~~~g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rDn~l~Pt~G----------~~-~~~~~e~~~~~g 562 (718)
T TIGR00992 494 SRHINANGQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTNFVNGPTVG----------SR-VRFQVDQGLGVG 562 (718)
T ss_pred eeeccccCccccccccccccCCcceecCCCccceEEEEEEEEEecCCCCCCCCcc----------cE-EEEEEEeccCcC
Confidence 332222111 00 0112345678889999999999964 33 677788887765
Q ss_pred CCcceEEEEEEEEEEEEEecC----------ceEEEEEeeeeeccCCCccCccccCCCCccccccCCCccccceEEEEeE
Q 005677 558 PEWLFFNRVNARARKGVEIGP----------ARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSG 627 (683)
Q Consensus 558 ~~~~~f~k~~~~~~~y~~l~~----------~~l~lr~~~G~~~g~lP~~erF~lGG~~svRGy~~~~lgpG~~~~~~s~ 627 (683)
.+...|.|+.+++++|+|+.. .+|++++.+|++.|++|++++|++||.+|||||.++++|||++++.+++
T Consensus 563 ~~~~~f~r~~~~~~~y~pl~~~~~~~~~~~~~vla~r~~~G~~~gdlP~~e~F~lGG~~SVRGY~~~~lGpGr~~~~~s~ 642 (718)
T TIGR00992 563 SGFPFFNRHQLTYTKFIQLNWVELGAGKSPPPVLVLHGHYGGCVGDLPSYDAFILGGPYSVRGYNMGELGAARNIFEATA 642 (718)
T ss_pred CCCceEEEEEEEEEEEEeccccccccccCCCcEEEEEEEeeeEcCCCCchhceecCCCCcccCccCCcccccceeeEEEE
Confidence 445579999999999999852 3789999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCce-----eEEEecCCCC---cc--------cccccccceeeeccccccccccccC
Q 005677 628 EISFPMVCDDYQ-----ISVLYGSKSE---NI--------LKLYHCMFMMLKSACNCASHELAEG 676 (683)
Q Consensus 628 ElR~pl~~~~~g-----~g~~~g~~~~---~~--------~k~~~~~~~~~~~~~~~~~~~~~~~ 676 (683)
|||+|+.. .++ +|++|+...+ +. ++.-.+++++|.++..-.++|+.+|
T Consensus 643 E~r~Pi~~-~~g~~F~D~G~~~~s~~~~~g~~~~~~~~~~~~~s~GvGvR~~sPiGPiRlD~~~~ 706 (718)
T TIGR00992 643 EIRIPIKA-THVYAFVEHGSDLGSSKDVKGNPTIVYRRPGQGSSYGAGVKLGLVRAEYAVDHNEG 706 (718)
T ss_pred EEEEEecC-ccEEEEEecccccCcccccCCCccccccCCCCccceeEEEEEecCcccEEEEecCC
Confidence 99999985 334 3444444221 11 1233566788999998888998554
No 3
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.7e-56 Score=510.31 Aligned_cols=510 Identities=22% Similarity=0.315 Sum_probs=418.8
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhh----ccCCCCccCHHHHHHHHHHHH----HcCCCceEeE-EEE
Q 005677 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALK----ACRANSALTVREVQEDVHRII----DSGYFCSCMP-VAV 200 (683)
Q Consensus 130 ~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~----~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~-~~~ 200 (683)
.|+||+..+|+.|.|.| |+.+++.+|+..+..+-. +....+.|++.+++.|+++|. ++||.++.|. ..+
T Consensus 165 ~i~eG~~~~i~~I~~~G--n~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~~v~s~~~ 242 (766)
T COG4775 165 VINEGPSAKIKQINFEG--NTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADFRVSSTQV 242 (766)
T ss_pred EeCCCCccceeeeEEec--cccccchhhhhheeeccceeEEEEecccccChhhhhccHHHHHHHHHhCceEEEEEeeeee
Confidence 78899999999999999 999999999986522111 234456899999999999995 8999999995 332
Q ss_pred ---eCCCcEEEEEEEeeCCceE--EEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-eeEeecE
Q 005677 201 ---DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV 274 (683)
Q Consensus 201 ---~~~~~v~v~~~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~ 274 (683)
++++.+.|+|.|+|||+|+ +|.++|+...+.++|++.+.+++|++|+.++|++..++|+++|.+.|| +++|.+.
T Consensus 243 ~~~~~k~~~~vt~~V~EG~~y~~~~i~i~g~~~~~~~el~~~~~~~~g~~fn~~~i~~~~~~I~~~~~~~GY~~a~V~p~ 322 (766)
T COG4775 243 SLDPDKKGVTVTYTVKEGPQYKFGSVLIEGNLAGVSEELEKLLKVKPGKLFNRKKIEDDADKIKERYARYGYAFANVSPQ 322 (766)
T ss_pred cccCCCccEEEEEEEccCCceEEEEEEEEcCccCcHHHHHHhhccCCCceEcHHHHHHHHHHHHHHHHhcCceeeEeeee
Confidence 3567899999999999987 999999998889999999999999999999999999999999999999 8999766
Q ss_pred EEeeC--cE--EEEEEE---EEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCcc
Q 005677 275 EILSG--GI--IRLQVA---EAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIME 347 (683)
Q Consensus 275 ~~~~~--g~--v~l~V~---e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~ 347 (683)
...++ .+ |.++|+ +.+|++|.|. || .+|++++|+|++.++||++||..+++++.++|+++|||+
T Consensus 323 ~~~n~~~~tv~v~~~V~~g~~~~V~~i~i~------gn---~rT~D~VIrRE~~~~eGd~fn~~~v~~~~~rL~~lgyF~ 393 (766)
T COG4775 323 PDANDENKTVDVVFRVDEGDRVYVRRIRIR------GN---TRTKDYVIRREMRLKEGDVFNRKLVQRGKRRLRRLGYFE 393 (766)
T ss_pred cccCCCCcEEEEEEEEEcCCceeeeeeeec------CC---CccccHHhhhhhhcCCcchhhHHHHHHHHHHHHhcCCce
Confidence 55543 33 566776 4689999999 99 899999999999999999999999999999999999999
Q ss_pred ceeeeeecCCCCCeEEEEEEEEEcCCeeEEEeeeecCCCCCCCCcccEEEEEEEEccCCcCCcEEEEEEEecceeeEEEE
Q 005677 348 DVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRI 427 (683)
Q Consensus 348 ~V~i~~~~~~~~g~v~l~i~V~E~~~~~~~~g~gy~s~~~~~~~~G~~~~~~l~~~NlfG~g~~l~~~~~~~~~~~~~~l 427 (683)
+|+|...|.+.++.+||+++|+|+.++++++|+||++. .|+.+.++|+.+|+||.|+.+++.++.++..+.+.+
T Consensus 394 ~V~i~~~~~~~~~~vdvvv~VkE~~Tgsi~~G~Gy~s~------~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~~~~~~l 467 (766)
T COG4775 394 SVNIDTAPGSGSDQVDVVVDVKERSTGSINFGLGYGSD------SGLSGFASLSERNFLGTGQSLSLNANLGDKQTSYSL 467 (766)
T ss_pred eeEEEeccCCCCCeEEEEEEEEecCceeEEecccccCC------CceEEEEEEEEeecCccccEEEEEEEeccceEEEEE
Confidence 99999998767779999999999999999999999986 889999999999999999999999999999999999
Q ss_pred EEEccccCCCCCceEEEEEEEeeecCCcccCCCCCCCCceEEEEEEEEEEEEeecCCCeEEEEEEEEEEEEeecCCCCc-
Q 005677 428 NYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNP- 506 (683)
Q Consensus 428 ~y~~P~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gl~~~~~~~~~~~~~~- 506 (683)
+|+.||+..++ +++++++++++... +.. ......|+..+.|+++++++|+++++++++++.+++.........+
T Consensus 468 ~ft~P~f~~~~--~slg~~~f~~~~~~--~~~-~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~ 542 (766)
T COG4775 468 SFTDPYFLDDR--VSLGFNLFSNRYDT--FDA-DTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPP 542 (766)
T ss_pred EEecccccCCC--ceeEEEeEeeeecc--ccc-ccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCcc
Confidence 99999988754 78999988776531 010 0111378999999999999999999999999999988775332111
Q ss_pred ------ee------ccccCCceeeccccCCceeEEEeeEEEccCCCCCCceeEEeeeeccCcCCCcceEEEEEEEEEEEE
Q 005677 507 ------II------KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGV 574 (683)
Q Consensus 507 ------~~------~~~~~~~l~~~~d~rD~~~~P~~G~~~~~~G~~G~~~~~~~~e~~~~~~~~~~~f~k~~~~~~~y~ 574 (683)
.. .....+.++++||++|+.++|++|+. +....+.+.++ ++..|+|+.+++++|+
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~s~~~tyD~rD~~~~Pt~G~~-----------~~~~~e~~~~G--gd~~~~K~~~~~~~Y~ 609 (766)
T COG4775 543 DEYASLGVKLQGGKSDLSSLSLGWTYDTRDNALFPTKGSY-----------LSLTQEVAGLG--GDIKYYKLELDGSKYY 609 (766)
T ss_pred ccccccccccccCcceeEEEEEeEEEcCCCCcCCCCCCeE-----------EeeeeEEeccC--CcceEEEEEEEEEEEE
Confidence 01 11233567788999999999997554 34445555543 6899999999999999
Q ss_pred EecCc--eEEEEEeeeeec--c--CCCccCccccCCCCccccccCCCccc---------cceEEEEeEEEEEeccc-CC-
Q 005677 575 EIGPA--RLLLSLSGGHVV--G--NFSPHEAFAIGGTNSVRGYEEGAVGS---------GRSYVVGSGEISFPMVC-DD- 637 (683)
Q Consensus 575 ~l~~~--~l~lr~~~G~~~--g--~lP~~erF~lGG~~svRGy~~~~lgp---------G~~~~~~s~ElR~pl~~-~~- 637 (683)
|+.+. ++.++..+|+.. | .+|.+|+|++||.++||||+.+.+|| |++++.+|+|||||++. ..
T Consensus 610 ~l~~~~~~l~~~~~~g~~~~~g~~~~p~~e~F~~GG~~svRGf~~~~igp~~~~~~~~GG~~~~~~S~El~fPl~~~~~~ 689 (766)
T COG4775 610 PLTDYIFTLSLRGEVGYGKGYGTKLLPIYERFYLGGSNSVRGFESGGLGPKDGYTDALGGTSYFVASAELRFPLPKVIGS 689 (766)
T ss_pred EcccccEEEEEEEEEEEeeccCCcccccccceeeCCCccccceecCCcCCccccccccCceEEEEEEEEEEeecCCCCCc
Confidence 99875 456666667664 3 58999999999999999999999999 99999999999999996 22
Q ss_pred --ce-----eEEEecCC-----CCccc------ccccccceeeeccccccccccc
Q 005677 638 --YQ-----ISVLYGSK-----SENIL------KLYHCMFMMLKSACNCASHELA 674 (683)
Q Consensus 638 --~g-----~g~~~g~~-----~~~~~------k~~~~~~~~~~~~~~~~~~~~~ 674 (683)
++ +|.+|+.+ ..+.. .-..++..+|.++..-..+|+|
T Consensus 690 ~~r~~lF~D~G~v~~~~~~~~~~~~~~~~~~~~r~S~Gvgl~w~sP~gPlr~d~a 744 (766)
T COG4775 690 GVRGALFFDAGSVWNTGTDPSTVRNFYGSGSELRASAGVGLRWASPLGPLRFDYA 744 (766)
T ss_pred ceEEEEEEEcccccccCcccccccCCcCcCcceeEEeeeeEEEecCCCcEEEEee
Confidence 12 45555533 01221 1123455667777766677666
No 4
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=100.00 E-value=1e-52 Score=500.77 Aligned_cols=505 Identities=16% Similarity=0.212 Sum_probs=406.4
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCC---------CCccCHHHHHHHHHHHH----HcCCCceEe
Q 005677 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRA---------NSALTVREVQEDVHRII----DSGYFCSCM 196 (683)
Q Consensus 130 ~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~---------g~~~~~~~l~~d~~~L~----~~GYf~a~V 196 (683)
.|+|+++++|++|+|+| |+.+++++|++.+ .+++ +..|++..+++|+++|. ++||++++|
T Consensus 168 ~i~EG~~~~I~~I~f~G--N~~~~~~~L~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a~V 240 (803)
T PRK11067 168 VFTEGVSAKIQQINIVG--NHAFSTDELISRF-----QLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240 (803)
T ss_pred EEecCCeEEEEEEEEEC--CCCcCHHHHHHHh-----cCCCCcchhhhccCCccCHHHHhhhHHHHHHHHHHCCCceEEe
Confidence 78899999999999999 9999999999854 2443 47899999999999985 799999999
Q ss_pred EE---EEe-CCCcEEEEEEEeeCCceE--EEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-ee
Q 005677 197 PV---AVD-TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FG 269 (683)
Q Consensus 197 ~~---~~~-~~~~v~v~~~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a 269 (683)
.. .+. +++.+.|+|.|+||++|+ +|.|.|+..+++++|++.+.+++|++|+...+++++++|.++|+++|| ++
T Consensus 241 ~~~~~~~~~~~~~v~i~~~I~eG~~~~i~~i~~~G~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~~~~~GY~~a 320 (803)
T PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320 (803)
T ss_pred cCcEEEEcCCCceEEEEEEEeeCCcEEEEEEEEEecCCCCHHHHHHhhcCCCCceeCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 53 222 345799999999999976 999999998888899999999999999999999999999999999999 78
Q ss_pred EeecEEE--eeCcE--EEEEEEE---EEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHh
Q 005677 270 MVSGVEI--LSGGI--IRLQVAE---AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342 (683)
Q Consensus 270 ~V~~~~~--~~~g~--v~l~V~e---~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~ 342 (683)
+|.+... .+++. |++.|+| ++|++|.|. |+ .++++.+|++.+.+++|++|+.+++++++++|++
T Consensus 321 ~v~~~~~~~~~~~~v~i~~~v~eG~~y~ig~I~i~------Gn---~~~~~~~l~r~l~~~~G~~~~~~~l~~~~~~L~~ 391 (803)
T PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNR 391 (803)
T ss_pred eeeeccccCCCCCEEEEEEEEeeCCeEEEEEEEEE------CC---ccccchhhhhheeccccccCCHHHHHHHHHHHHh
Confidence 8854322 23344 6677775 579999999 98 7899999999999999999999999999999999
Q ss_pred CCCccceeeeeecC-CCCCeEEEEEEEEEcCCeeEEEeeeecCCCCCCCCcccEEEEEEEEccCCcCCcEEEEEEEecce
Q 005677 343 MGIMEDVSIIPQPA-GDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQI 421 (683)
Q Consensus 343 lg~F~~V~i~~~~~-~~~g~v~l~i~V~E~~~~~~~~g~gy~s~~~~~~~~G~~~~~~l~~~NlfG~g~~l~~~~~~~~~ 421 (683)
+|+|+.|.+++.+. ..++.++|++.|+|++++.+++|+||+++ .|+.+.++|+++|+||.|++++++++.+..
T Consensus 392 ~g~F~~V~~~~~~~~~~~~~v~l~v~v~e~~~~~~~~g~gy~s~------~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~ 465 (803)
T PRK11067 392 LGFFETVDVDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTE------SGVSFQAGVQQDNWLGTGNSVGINGTKNDY 465 (803)
T ss_pred cCCcccCccccccCCCCCCeEEEEEEEEEccCCcEEEEeeecCc------CCEEEEEEEEecccCCcCcEEEEEEEeccc
Confidence 99999999988653 34579999999999999999999999986 789999999999999999999999999988
Q ss_pred eeEEEEEEEccccCCCCCceEEEEEEEeeecCCcccCCCCCCCCceEEEEEEEEEEEEeecCCCeEEEEEEEEEEEEeec
Q 005677 422 DSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARD 501 (683)
Q Consensus 422 ~~~~~l~y~~P~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gl~~~~~~~~~ 501 (683)
.+.+.++|..||+...+ ++++.++++...... ......|...+.++++.+++|+.+++++.+++.+++.+..+
T Consensus 466 ~~~~~l~~~~P~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 538 (803)
T PRK11067 466 QTYAELSVTDPYFTVDG--VSLGGRIFYNDFEAD-----DADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSN 538 (803)
T ss_pred eEEEEEEEeCCcCcCCC--ceEEEEEEEEecccc-----ccccccceeeEEEEEEEEEEEecCceEEEEEEEEEEEEeec
Confidence 88999999999987654 466666555543210 11234688888999999999999999999999998876643
Q ss_pred CCCCc-------------------ee-ccccCCceeeccccCCceeEEEeeEEEccCCCCCCceeEEeeeeccCcCCCcc
Q 005677 502 EKGNP-------------------II-KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWL 561 (683)
Q Consensus 502 ~~~~~-------------------~~-~~~~~~~l~~~~d~rD~~~~P~~G~~~~~~G~~G~~~~~~~~e~~~~~~~~~~ 561 (683)
..... .. .....+.++++||++|+.++|+.|..+ .++.+.+.+ .++.
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~~~~Pt~G~~~-----------~~~~~~~~~--gs~~ 605 (803)
T PRK11067 539 MQPQVAMWRYLYSMGENPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRV-----------NLTGKVTIP--GSDN 605 (803)
T ss_pred CCcchhHHHHHHHcCCccccccccccceEEEEEEEEEEEecCcCCCCCCCCeeE-----------EEEEEEEee--cccc
Confidence 21100 00 012245567889999999999975542 333333332 3578
Q ss_pred eEEEEEEEEEEEEEecC-c--eEEEEEeeeeecc----CCCccCccccCCCCccccccCCCccc----------------
Q 005677 562 FFNRVNARARKGVEIGP-A--RLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS---------------- 618 (683)
Q Consensus 562 ~f~k~~~~~~~y~~l~~-~--~l~lr~~~G~~~g----~lP~~erF~lGG~~svRGy~~~~lgp---------------- 618 (683)
+|.|+.+++++|+|++. + ++.+++.+|++.+ ++|++++|++||.++||||+++++||
T Consensus 606 ~f~k~~~~~~~y~~l~~~~~~~l~~r~~~G~~~~~~~~~lP~~erF~lGG~~svRGy~~~siGp~~~~~~~~~~~~~~~~ 685 (803)
T PRK11067 606 EYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNYTQDG 685 (803)
T ss_pred eEEEEEEEEEEEEEecCCCcEEEEEEEEeeeeecCCCCCCChhheeccCCCCcCCcccCCCcCCcccccccccccccccc
Confidence 99999999999999985 2 4666777776543 59999999999999999999887775
Q ss_pred ------------cceEEEEeEEEEEeccc------CCce------eEEEecCCCC--------------c--cccccccc
Q 005677 619 ------------GRSYVVGSGEISFPMVC------DDYQ------ISVLYGSKSE--------------N--ILKLYHCM 658 (683)
Q Consensus 619 ------------G~~~~~~s~ElR~pl~~------~~~g------~g~~~g~~~~--------------~--~~k~~~~~ 658 (683)
|+.++.+|+|||+|++. ..|+ +|++|+.... + -++.--++
T Consensus 686 ~~~~~~~~~~iGG~~~~~~s~E~~~p~~~~~~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~G~ 765 (803)
T PRK11067 686 AKDLCKSDDAVGGNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGI 765 (803)
T ss_pred ccccCCCCCCCCCeEEEEEeEEEEEeCCccccccCCCEEEEEEEEeeecccCCcccccccccccccCcCCCCcEEEEEeE
Confidence 77999999999999743 1344 5556654210 1 13444566
Q ss_pred ceeeeccccccccccccC
Q 005677 659 FMMLKSACNCASHELAEG 676 (683)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~ 676 (683)
+.+|.++..-+++|+|-+
T Consensus 766 G~r~~sPiGPirld~a~p 783 (803)
T PRK11067 766 ALQWMSPLGPLVFSYAQP 783 (803)
T ss_pred EEEEeCCCCCeEEEEEEe
Confidence 788999999999999875
No 5
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=1.7e-50 Score=478.66 Aligned_cols=510 Identities=20% Similarity=0.297 Sum_probs=411.1
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHh----hccCCCCccCHHHHHHHHHHHH----HcCCCceEeE-E--
Q 005677 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTAL----KACRANSALTVREVQEDVHRII----DSGYFCSCMP-V-- 198 (683)
Q Consensus 130 ~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l----~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~-~-- 198 (683)
.|+|+++++|.+|+|+| |+.+++++|++.+.... ...+.++.|+++.+++|+++|. ++||++++|. .
T Consensus 143 ~v~eg~~~~i~~i~~~G--n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~ 220 (741)
T TIGR03303 143 NIKEGKKAKIKKINFVG--NKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQV 220 (741)
T ss_pred EEecCCEEEEEEEEEEC--CCcCCHHHHHHHHhcCcchhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEEEEcCCEE
Confidence 78899999999999999 99999999998552110 0123468999999999999985 8999999985 2
Q ss_pred EE-eCCCcEEEEEEEeeCCceE--EEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-eeEeecE
Q 005677 199 AV-DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV 274 (683)
Q Consensus 199 ~~-~~~~~v~v~~~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~ 274 (683)
.+ .+++.+.|+|.|+||++|+ +|.|.|+..+++++|++.+.+++|++|+.+.+++++++|.++|+++|| +++|.+.
T Consensus 221 ~~~~~~~~~~i~~~v~eG~~~~i~~i~i~g~~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~l~~~y~~~Gy~~~~v~~~ 300 (741)
T TIGR03303 221 SITPDKKGVYITYNIKEGEQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPR 300 (741)
T ss_pred EECCCCCEEEEEEEeccCCCEEEEeEEEEeccCCcHHHHHHhhcCCCCCeeCHHHHHHHHHHHHHHHHhcCCceeEEEec
Confidence 33 2456799999999999976 999999999899999999999999999999999999999999999999 7888754
Q ss_pred EEe--eCcE--EEEEEEE---EEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCcc
Q 005677 275 EIL--SGGI--IRLQVAE---AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIME 347 (683)
Q Consensus 275 ~~~--~~g~--v~l~V~e---~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~ 347 (683)
... .++. |++.|+| ++|++|.|. |+ ..+++.+|++++.+++|++|+.+++++++++|+++|+|+
T Consensus 301 ~~~~~~~~~v~v~~~v~eg~~~~i~~i~i~------g~---~~t~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~lg~f~ 371 (741)
T TIGR03303 301 PQINDENKTVDLTFKVDPGKRVYVRRINIS------GN---TRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFE 371 (741)
T ss_pred ceECCCCCEEEEEEEEccCCeEEEEEEEEE------CC---CccccceeehhhccCcccccCHHHHHHHHHHHHhCCCCc
Confidence 332 2333 6788876 479999999 99 799999999999999999999999999999999999999
Q ss_pred ceeeeeecCCCCCeEEEEEEEEEcCCeeEEEeeeecCCCCCCCCcccEEEEEEEEccCCcCCcEEEEEEEecceeeEEEE
Q 005677 348 DVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRI 427 (683)
Q Consensus 348 ~V~i~~~~~~~~g~v~l~i~V~E~~~~~~~~g~gy~s~~~~~~~~G~~~~~~l~~~NlfG~g~~l~~~~~~~~~~~~~~l 427 (683)
.|.+.+.+...++.++|++.|+|++++.+.++++|++. .|+.+.+++.++|+||.|+.+++.+..+...+.+.+
T Consensus 372 ~v~~~~~~~~~~~~~~v~i~v~e~~~~~~~~~~g~~~~------~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~ 445 (741)
T TIGR03303 372 TVNIETVPVGSPDQVDLNVKVKEQPTGSISFGVGYGSS------SGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSL 445 (741)
T ss_pred eeeeeecCCCCCCEEEEEEEEEEccccEEEEeeeecCC------CceEEEEEEEEecccccccEEEEEEEeccceEEEEE
Confidence 99999888767899999999999999999999999875 789999999999999999999999999988889999
Q ss_pred EEEccccCCCCCceEEEEEEEeeecCCcccCCCCCCCCceEEEEEEEEEEEEeecCCCeEEEEEEEEEEEEeecCCCCc-
Q 005677 428 NYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNP- 506 (683)
Q Consensus 428 ~y~~P~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gl~~~~~~~~~~~~~~- 506 (683)
+|+.|++.+.+ +.+++++++++.+.. ......|...+.++++.+++++.+++++.+++++++.++.+.....
T Consensus 446 ~~~~P~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (741)
T TIGR03303 446 SFTDPYFTDDG--VSLGFSIFYSETDRN-----YKNFSDYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKNSSDSDS 518 (741)
T ss_pred EEECCCCcCCC--eEEEEEEEEEEcccc-----cccccCceeEEEEEEEEEEEEecCceEEEEEEEEEEEEEecCCCcch
Confidence 99999988755 466666665554221 0123457888889999999999999999999999887765422110
Q ss_pred ----ee------ccccCCceeeccccCCceeEEEeeEEEccCCCCCCceeEEeeeeccCcCCCcceEEEEEEEEEEEEEe
Q 005677 507 ----II------KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEI 576 (683)
Q Consensus 507 ----~~------~~~~~~~l~~~~d~rD~~~~P~~G~~~~~~G~~G~~~~~~~~e~~~~~~~~~~~f~k~~~~~~~y~~l 576 (683)
.+ ....++.++++||++|+.++|+.|..+ .+..+.+.+ .++.+|.|+.+++++|++|
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~d~rD~~~~P~~G~~~-----------~~~~~~~~~--g~~~~f~k~~~~~~~y~~l 585 (741)
T TIGR03303 519 SASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPTKGSIQ-----------RLSQEFAGP--GGDLKYYKLTYDSEYYIPL 585 (741)
T ss_pred hHHHHHHHhCCceEEEEEEEEEEEeCCcCCCCCCCCcEE-----------EEEEEEeee--cCCceEEEEEEEEEEEEEc
Confidence 00 012345667889999999999976543 333333322 3578999999999999999
Q ss_pred cC---ceEEEEEeeeeecc----CCCccCccccCCCCccccccCCCccc-----------cceEEEEeEEEEEecc---c
Q 005677 577 GP---ARLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS-----------GRSYVVGSGEISFPMV---C 635 (683)
Q Consensus 577 ~~---~~l~lr~~~G~~~g----~lP~~erF~lGG~~svRGy~~~~lgp-----------G~~~~~~s~ElR~pl~---~ 635 (683)
.+ .+|++++.+|++.+ ++|++|+|++||.++||||.+++++| |+.++.+++|||+|+. .
T Consensus 586 ~~~~~~~l~~~~~~g~~~~~~~~~~p~~e~f~lGG~~svRGy~~~~igp~~~~~~~~~~gG~~~~~~~~Elr~pl~~~~~ 665 (741)
T TIGR03303 586 SKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRDINDSGDSIGGNAMATANVELIFPLPFLPE 665 (741)
T ss_pred CCCCcEEEEEEEEeeEEEcCCCCccChhHeEecCCCCcCCCccCCCcCCCccCCCCCCCCceEEEEEEEEEEEcCCCCCc
Confidence 87 36888899988753 69999999999999999999999876 9999999999999995 1
Q ss_pred -CCce------eEEEecCCCC------cc--cccccccceeeeccccccccccccC
Q 005677 636 -DDYQ------ISVLYGSKSE------NI--LKLYHCMFMMLKSACNCASHELAEG 676 (683)
Q Consensus 636 -~~~g------~g~~~g~~~~------~~--~k~~~~~~~~~~~~~~~~~~~~~~~ 676 (683)
..+. +|++|+...+ .. +..--++++++.++-.-+++|+|-+
T Consensus 666 ~~~~~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~s~G~Glr~~tp~gpi~ld~a~~ 721 (741)
T TIGR03303 666 DNGLRGSVFFDAGNVWGTDQKKEGDYSDDSSLRASVGVGLRWISPMGPLRFSYAKP 721 (741)
T ss_pred cCcEEEEEEEEeeecccCCcccccccCCCCcEEEEEEEEEEEECCcCcEEEEEEEe
Confidence 1222 6777765421 12 2333455566677776677777653
No 6
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.2e-32 Score=303.97 Aligned_cols=452 Identities=17% Similarity=0.204 Sum_probs=320.2
Q ss_pred HHcCCCceEeEEEEe---CCCcEEEEEEEeeCCceE----EEEEecccCCChhHHHHh---hccCCCccccHHHHHHHHH
Q 005677 187 IDSGYFCSCMPVAVD---TRDGIRLVFQVEPNQEFH----GLVCEGANVLPTKFVEDA---FRDGYGKVVNIRRLDEVIT 256 (683)
Q Consensus 187 ~~~GYf~a~V~~~~~---~~~~v~v~~~V~eG~~~~----~I~~~G~~~~~~~~L~~~---~~~~~G~~~~~~~l~~~~~ 256 (683)
...||+.+.+.+.+. .+....+..+|++|++.+ .+.+.|... .+..++.. ...+.|.++++..++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~pg~~~~i~~~~~v~~G~a~-~d~~~~~~~~~~~~~~G~~~~~~~~~n~k~ 158 (594)
T COG0729 80 RALGYLQPKGRFGGKVSVTEKRGKLIAKVTPGEPTPIAVVIVVLPGPAF-TDGDYRLLGDAAGPKEGEDLNQGTYENAKS 158 (594)
T ss_pred hhhceecceeeecccccccccccceeeecCCCCCcccceeeeecccccc-cChhhhhhhhhhccccCCccccchhhhhHH
Confidence 368888888765442 224557778899998743 455677433 33333322 3566899999999999999
Q ss_pred HHHHHHHHCCc-eeEeecEEEeeC---cE--EEEEEE---EEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCC
Q 005677 257 SINGWYMERGL-FGMVSGVEILSG---GI--IRLQVA---EAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQV 327 (683)
Q Consensus 257 ~I~~~y~~~GY-~a~V~~~~~~~~---g~--v~l~V~---e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~ 327 (683)
.|.+...+.|| .+++...+...+ ++ +++.++ ++.++.|.|+ |. .++++..|++.+++++|++
T Consensus 159 ~i~~~~~~~gy~~a~~~~~r~~v~~~~~~a~~~~~~dsG~~y~~g~v~~~------g~---~r~~~~~~~~~~~~~~G~~ 229 (594)
T COG0729 159 SIVRALLRKGYFLARFTKSRLVVDPATHTADVDLNYDSGRRYRFGPVTVE------GS---QRIDEEYLQNLVPFKYGLP 229 (594)
T ss_pred HHHHHHHHcCcchhcccccccccccccceEEEEEeecccceEEeCcEEEc------cc---eecCHHHHhhccccCCCCc
Confidence 99999999999 587765443222 33 444444 6889999999 87 7899999999999999999
Q ss_pred CChHhHHHHHHHHHhCCCccceeeeeecC--CCCCeEEEEEEEEEcCCeeEEEeeeecCCCCCCCCcccEEEEEEEEccC
Q 005677 328 YSMLQGKRDVETVLTMGIMEDVSIIPQPA--GDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNV 405 (683)
Q Consensus 328 ~~~~~l~~~~~~L~~lg~F~~V~i~~~~~--~~~g~v~l~i~V~E~~~~~~~~g~gy~s~~~~~~~~G~~~~~~l~~~Nl 405 (683)
|+.+++.+..++|.++++|++|.+++... ..++.++|.|.+.|++...+.+|++|+++ .|..+++.|.++|+
T Consensus 230 Y~~~~l~~~~~rl~~~~~F~sv~v~~~~~~~~~~~~~pv~v~~~~rk~~~~~lG~gyst~------~G~~~~~~w~~~~~ 303 (594)
T COG0729 230 YDPEDLAELNQRLRQTGYFSSVVVQPADKQAGPDGLLPVKVSVSERKENTFELGVGYSTD------VGAGLEAGWEKRNL 303 (594)
T ss_pred CCHHHHHHHHHHHhhcCceeeEEEecCccccCcCceeceEEEecccccceEEeeeEEecc------ccccceEEeeeecc
Confidence 99999999999999999999999988654 45566899999999999999999999997 89999999999999
Q ss_pred CcCCcEEEEEEEecceeeEEEEEEEccccCCCCCceEEEEEEEeeecCCcccCCCCCCCCceEEEEEEEEEEEEeecCCC
Q 005677 406 FGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPK 485 (683)
Q Consensus 406 fG~g~~l~~~~~~~~~~~~~~l~y~~P~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 485 (683)
|++||++.....+++..+.....|..|.++.. ......++.++...+. +. .....+. ..+++.-.+.....
T Consensus 304 ~~~~~~l~~~~~is~~~~~~~~~y~~p~~~~~-~~~~~~~~~~~~~~~~--~~---t~~~~~~---~~l~~~~~~~~~~~ 374 (594)
T COG0729 304 FGRGHSLRIESEISAPLQTLEATYKAPLLFNP-LGQYNPVSAGFDRLDL--YD---TESDAYT---ESLSASRGWDASLG 374 (594)
T ss_pred cCcceeEeeeeeeccchhcCceEEEeecccCC-ccceeccccccccchh--hc---ccccccc---ceeeeeehhccccC
Confidence 99999999999999888889999999998764 2233333333332211 00 0111122 22333333333344
Q ss_pred eEEEEEE--EEEEEEeecCCCCceeccccCCceeeccccCCceeEEEeeEEEccCCCCCCceeEEeeeeccCcCCCcceE
Q 005677 486 WSGTVGL--IFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFF 563 (683)
Q Consensus 486 ~~~~~gl--~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~rD~~~~P~~G~~~~~~G~~G~~~~~~~~e~~~~~~~~~~~f 563 (683)
|...+++ .+++....+..+. ...-..+..+++.+|+ |+.++|+.|.. +.+....+.....++..|
T Consensus 375 ~~~~~~~r~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~-dd~~~Pt~G~~-----------~~~~~~~s~~~~~s~~~~ 441 (594)
T COG0729 375 WQRSLALRFSYDNFRQGDISGK-TSLLTPGVEFSYTRDT-DDGLFPTWGDR-----------LDLTIGPSYEALGSDVDF 441 (594)
T ss_pred ceeEEEEEEEccccccccccCC-ceEEecceEEEEEEcc-CCCCCCCccce-----------eeeeeeeccccccCchHH
Confidence 4444444 4444222222221 1111234556667777 99999996554 333444444433345544
Q ss_pred EEEEEEEEEEEEecC-c-eEEEEEeeeeecc----CCCccCccccCCCCccccccCCCccc---------cceEEEEeEE
Q 005677 564 NRVNARARKGVEIGP-A-RLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS---------GRSYVVGSGE 628 (683)
Q Consensus 564 ~k~~~~~~~y~~l~~-~-~l~lr~~~G~~~g----~lP~~erF~lGG~~svRGy~~~~lgp---------G~~~~~~s~E 628 (683)
.++ .....|++++. . .++.|+.+|++.+ ++|++.||++||..|||||.+++|+| |..++.+++|
T Consensus 442 ~~~-~~~~~~~~~~~~~~~~~~R~~~G~il~~~~~~vPps~rFfaGG~~svRGY~y~sI~p~~~~g~~~Gg~~l~~~s~E 520 (594)
T COG0729 442 RLV-QARSGYLRTGGADHRLAGRGELGAILTGDLDDVPPSLRFFAGGDRSVRGYGYQSIGPQDANGDLLGGRSLVTGSLE 520 (594)
T ss_pred hhh-hccceeeecCccceEEEEecccceEeeCccccCCccceeecCCCcceeccccccccCcCCCCCcccceEEEEeeEE
Confidence 334 44445555543 3 5777888998875 69999999999999999999999996 7799999999
Q ss_pred EEEecccCCceeEEEecCC--CCcc----ccccc--ccceeeeccccccccccccCcc
Q 005677 629 ISFPMVCDDYQISVLYGSK--SENI----LKLYH--CMFMMLKSACNCASHELAEGTD 678 (683)
Q Consensus 629 lR~pl~~~~~g~g~~~g~~--~~~~----~k~~~--~~~~~~~~~~~~~~~~~~~~~~ 678 (683)
|||++.. .|++++|++.+ .+|+ ..+++ +++.+|.|+..-..+|+|-+..
T Consensus 521 y~~~~t~-~~~~a~FvD~G~a~n~~~~~~~d~k~G~Gigvr~~SPvGPIr~DiA~pl~ 577 (594)
T COG0729 521 YQYLVTD-PWGLAVFVDAGSAGNNFTRLFSDLKKGAGIGVRWDSPVGPIRFDIAVPLE 577 (594)
T ss_pred EEEeccC-cEEEEEEEEccccccCCchhhhhhhccceeeEeecCCcCCeEEEeecccc
Confidence 9999996 78877777766 2333 23554 4557777888888899887643
No 7
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-29 Score=283.39 Aligned_cols=397 Identities=19% Similarity=0.232 Sum_probs=291.8
Q ss_pred EEEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-eeEee-cEEEeeCcEEEEEEEEEEEeeEEE
Q 005677 219 HGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVS-GVEILSGGIIRLQVAEAEVNNISI 296 (683)
Q Consensus 219 ~~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~-~~~~~~~g~v~l~V~e~~I~~I~I 296 (683)
+.|.++|+..++..+|++.+....|+++....|+.++.+|+++|.++|| .++|. +.+.+.+|+|.|+|.||+|++|.|
T Consensus 76 ~~i~l~g~~~~~~~~l~~~~~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G~l~l~VveG~i~~i~i 155 (554)
T COG2831 76 NRIELEGNTLLDALELQAILAPYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSGTLRLQVVEGRIEDIRI 155 (554)
T ss_pred EEEEEeCCcccChHHHHHhhHHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCCeEEEEEeceEeeeEEE
Confidence 3899999999999999999999999999999999999999999999999 77766 568889999999999999999999
Q ss_pred EEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCccceeeeeecCCCCCeEEEEEEEEEcCCeeE
Q 005677 297 RFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGF 376 (683)
Q Consensus 297 ~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~v~l~i~V~E~~~~~~ 376 (683)
. |+ ....+..++..++..+|++++..+||+.+..|+++.-.+ |.+++.|+..+|..+|+|++++.++..+
T Consensus 156 ~------g~---~~~~~~~~~~~~p~~~g~~Ln~~~lEq~l~~l~~~P~~q-a~~~l~pg~~~G~S~l~i~~~~~~~~~~ 225 (554)
T COG2831 156 T------GD---SDLRSVALRSLFPAHRGDPLNLRDLEQGLELLNRLPGVQ-ADAELVPGSEPGESDLVIKVQQGKPWRV 225 (554)
T ss_pred c------CC---CccchhhHHhhccccCCCCCCHHHHHHHHHHhhhCcccc-ceeEEccCCCCCccEEEEEeeeCCCeEE
Confidence 9 87 566668889999999999999999999999999998765 8889999889999999999999887666
Q ss_pred EEeeeecCCCCCCCCcccEEEEEEEEccCCcCCcEEEEEEEeccee---eEEEEEEEccccCCCCCceEEEEEEEeeecC
Q 005677 377 SAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQID---SIFRINYTDPWIEGDDKRTSRTIMVQNSRTP 453 (683)
Q Consensus 377 ~~g~gy~s~~~~~~~~G~~~~~~l~~~NlfG~g~~l~~~~~~~~~~---~~~~l~y~~P~~~~~~~~~s~~~~~~~~~~~ 453 (683)
.+++ ++..+ .....+++++++...|++|.|+++++++..+... ..++++|+.|+... .++++.+....+..
T Consensus 226 ~~~~--DN~G~-~~tG~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~~---~~~~~~s~~~y~~~ 299 (554)
T COG2831 226 SASA--DNYGS-KSTGRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGYW---TFSLGASYSEYRQV 299 (554)
T ss_pred EEEe--cCCCC-cCccceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEccc---eeEEEeeeeeeEee
Confidence 5554 33211 1123367999999999999999999999985332 48999999998753 23444444333211
Q ss_pred CcccCCCCCCCCceEEEEEEEEEEEEeecCCC--eEEEEEEEEEEEEeecCCCCcee----ccccCCceeeccc------
Q 005677 454 GTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPK--WSGTVGLIFQHSGARDEKGNPII----KDFYSSPLTASGK------ 521 (683)
Q Consensus 454 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~gl~~~~~~~~~~~~~~~~----~~~~~~~l~~~~d------ 521 (683)
+ .+ ......+..++...++.+++++.++ .++++++++.+.+..+......+ +......+.+++.
T Consensus 300 --~-~~-~~~~~~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~~q~r~~~~~~~gl~~~~~~~~~ 375 (554)
T COG2831 300 --L-EG-PFDVLDYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIEVQRRRLTAVELGLSGRRYLGGG 375 (554)
T ss_pred --c-cc-CCceEEEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhccccccccccccccEEecceEEEEeccc
Confidence 1 11 0122356666777888999999644 45666667766654332221111 1111111111111
Q ss_pred cCCceeEEEeeEEEccCCCCCCceeEEeeeeccCc-CCCcceEEEEEEEEEEEEEecC-c-eEEEEEeeeeeccCCCccC
Q 005677 522 TNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPV-WPEWLFFNRVNARARKGVEIGP-A-RLLLSLSGGHVVGNFSPHE 598 (683)
Q Consensus 522 ~rD~~~~P~~G~~~~~~G~~G~~~~~~~~e~~~~~-~~~~~~f~k~~~~~~~y~~l~~-~-~l~lr~~~G~~~g~lP~~e 598 (683)
..|..+.-..|.. +.|.. . ..... ...+..|.++++++++.+||.. . .+..++.+||+.+.|++.|
T Consensus 376 ~~~~~l~~~~G~~-----~lGa~-----~-~~~~~~~~~~~~f~~~~~~~~~~~~f~~~~~~~~~~~~~Q~s~~~L~s~e 444 (554)
T COG2831 376 TLDASLGYRRGLG-----ALGAS-----K-DDEETNGEPTSRFKKLNGNASLLQPFGLGPFLYATQFNAQYSGDPLLSSE 444 (554)
T ss_pred eecccchhhhCch-----hhcCC-----C-CchhhcCCCCcceEEEEEeeEEEeecccccEEEEEEEEEEEcCCCCCcHH
Confidence 1111111111111 11111 0 00001 1246799999999999999997 4 7888999999999999999
Q ss_pred ccccCCCCccccccCCCccccceEEEEeEEEEEecccCC-c--eeEEEecCC
Q 005677 599 AFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMVCDD-Y--QISVLYGSK 647 (683)
Q Consensus 599 rF~lGG~~svRGy~~~~lgpG~~~~~~s~ElR~pl~~~~-~--g~g~~~g~~ 647 (683)
+|.+||..+||||+.+.+. ||.+|.++.|+|+++.... + .+|.+||..
T Consensus 445 ~fsiGg~~sVRGf~~~~ls-gD~G~~~snel~~~~~~~~~~~~y~f~D~G~v 495 (554)
T COG2831 445 KFSIGGRYSVRGFDGGSLS-GDRGWYLSNELRWPLPPGGALQPYVFVDYGKV 495 (554)
T ss_pred HeecCCCceecccCCCCcc-ccceEEEEEEEEeeccCCCceeEEEEEEeEEE
Confidence 9999999999999999987 9999999999999998642 3 255555544
No 8
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=99.89 E-value=6.3e-20 Score=217.72 Aligned_cols=229 Identities=16% Similarity=0.277 Sum_probs=191.3
Q ss_pred cccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCCCceEeEEEEe--C
Q 005677 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVD--T 202 (683)
Q Consensus 129 ~~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~~~~~--~ 202 (683)
-.+.+.|++.|++|+|+| |+.+++++|++.+ ..+++|..|++..+++|+++|. ++|||++.|...+. .
T Consensus 61 l~~~v~e~~~i~~i~~~G--~~~~~~~~l~~~~----~~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~ 134 (741)
T TIGR03303 61 LVIKVKERPIINSIVFSG--NKEIKKDQLKKAL----VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLP 134 (741)
T ss_pred EEEEEEecceEEEEEEEC--CccCCHHHHHHHH----hhccCCCcCCHHHHHHHHHHHHHHHHHcCcceeEEEEEEEECC
Confidence 367788899999999999 9999999999743 2478999999999999999994 89999999976653 3
Q ss_pred CCcEEEEEEEeeCCceE--EEEEecccCCChhHHHHhhccCC---------CccccHHHHHHHHHHHHHHHHHCCc-eeE
Q 005677 203 RDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGY---------GKVVNIRRLDEVITSINGWYMERGL-FGM 270 (683)
Q Consensus 203 ~~~v~v~~~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~---------G~~~~~~~l~~~~~~I~~~y~~~GY-~a~ 270 (683)
++.+.|+|+|+||++++ +|.|+|+..+++++|++.+..++ |++|+.+.+++++++|.++|+++|| .++
T Consensus 135 ~~~~~v~~~v~eg~~~~i~~i~~~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a~ 214 (741)
T TIGR03303 135 RNRVDLEFNIKEGKKAKIKKINFVGNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFK 214 (741)
T ss_pred CCeEEEEEEEecCCEEEEEEEEEECCCcCCHHHHHHHHhcCcchhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEEE
Confidence 45689999999999765 99999999999999999887776 4899999999999999999999999 688
Q ss_pred eecEEEe--eC-c--EEEEEEEE---EEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHh
Q 005677 271 VSGVEIL--SG-G--IIRLQVAE---AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342 (683)
Q Consensus 271 V~~~~~~--~~-g--~v~l~V~e---~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~ 342 (683)
|....+. .+ + .|++.|+| ++|++|.|. |+ ..++++.|++.+.+++|++|+.++++++.++|.+
T Consensus 215 v~~~~~~~~~~~~~~~i~~~v~eG~~~~i~~i~i~------g~---~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~l~~ 285 (741)
T TIGR03303 215 VESTQVSITPDKKGVYITYNIKEGEQYKFGEVTIE------GD---LIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKD 285 (741)
T ss_pred EcCCEEEECCCCCEEEEEEEeccCCCEEEEeEEEE------ec---cCCcHHHHHHhhcCCCCCeeCHHHHHHHHHHHHH
Confidence 8754332 22 3 36788875 579999999 98 7888999999999999999999999999888765
Q ss_pred ----CCCccceeeeee--cCCCCCeEEEEEEEEEcCC
Q 005677 343 ----MGIMEDVSIIPQ--PAGDTGKVDLIMNVVERPS 373 (683)
Q Consensus 343 ----lg~F~~V~i~~~--~~~~~g~v~l~i~V~E~~~ 373 (683)
.||. .+.+.+. +..+.+.++|++.|.|+++
T Consensus 286 ~y~~~Gy~-~~~v~~~~~~~~~~~~v~v~~~v~eg~~ 321 (741)
T TIGR03303 286 LLGEKGYA-FANVNPRPQINDENKTVDLTFKVDPGKR 321 (741)
T ss_pred HHHhcCCc-eeEEEecceECCCCCEEEEEEEEccCCe
Confidence 5763 3444443 3345678999999999985
No 9
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=99.87 E-value=1.3e-20 Score=200.51 Aligned_cols=253 Identities=24% Similarity=0.329 Sum_probs=188.4
Q ss_pred cCCcCCcEEEEEEEecceeeEEEEEEEccccCCCCCceEEEEEEEeeecCCcccCCCCCCCCceEEEEEEEEEEEEeecC
Q 005677 404 NVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIR 483 (683)
Q Consensus 404 NlfG~g~~l~~~~~~~~~~~~~~l~y~~P~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 483 (683)
|+||.|+++++.+.++...+.+.++|..|++..++ +.+.+++++.+... .....|...+.++++++++++.
T Consensus 1 N~~G~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 71 (323)
T PF01103_consen 1 NLFGTGQSLSVSATYGSDSQSLSLSYTNPYFFGDR--LSLGFSLYYSSSDS-------DEFSSYDEQTFGFSLSLGYRIS 71 (323)
T ss_pred CCCCCCeEEEEEEEEcCceEEEEEEEEEcCCCCCC--EEEEEEEEEEEccc-------cccccceeeeccccccceeEcc
Confidence 89999999999999988889999999999988754 56777776553211 1334688888899999999999
Q ss_pred CCeEEEEEEEEEEEEeecCCCCce------------eccccCCceeeccccCCceeEEEeeEEEccCCCCCCceeEEeee
Q 005677 484 PKWSGTVGLIFQHSGARDEKGNPI------------IKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNME 551 (683)
Q Consensus 484 ~~~~~~~gl~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~d~rD~~~~P~~G~~~~~~G~~G~~~~~~~~e 551 (683)
+.+++++++.+.+.+......... ......+.++++||++|+.++|+.|.. +.+..+
T Consensus 72 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~-----------~~~~~~ 140 (323)
T PF01103_consen 72 PNWSLSLGYSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPTKGWY-----------LSFSLE 140 (323)
T ss_pred cceEEEEEEEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCccceE-----------EEEEEE
Confidence 999999999998887654432210 011344667888999999999997654 344444
Q ss_pred eccCcCCCcceEEEEEEEEEEEEEecC--c-eEEEEEeeeeecc-----CCCccCccccCCCCccccccCCCccc-----
Q 005677 552 QGLPVWPEWLFFNRVNARARKGVEIGP--A-RLLLSLSGGHVVG-----NFSPHEAFAIGGTNSVRGYEEGAVGS----- 618 (683)
Q Consensus 552 ~~~~~~~~~~~f~k~~~~~~~y~~l~~--~-~l~lr~~~G~~~g-----~lP~~erF~lGG~~svRGy~~~~lgp----- 618 (683)
.+.+...++..|.|+.+++++|+++.+ + ++++++.+|++.+ .+|..|+|++||.++||||..++++|
T Consensus 141 ~~~~~~~~~~~f~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~f~lGG~~svRGy~~~~~~~~~~~~ 220 (323)
T PF01103_consen 141 FSGKFLGSDSNFYKFELSARYYYPLGNNHKFVLALRLQGGYIFGYSNSDNLPFSERFYLGGPNSVRGYRYRSIGPRDGDG 220 (323)
T ss_pred EecccCCCcceEEEEEEEEEEEEECccCCceEEEEeeeeeEeeecccccccchhhhhccCCCCccccccCCccccccccC
Confidence 444334567889999999999999985 2 6788888888652 49999999999999999999999986
Q ss_pred ----cceEEEEeEEEEEecccC----Cce------eEEEecCCCCccc-----------ccccccceeeecccccccccc
Q 005677 619 ----GRSYVVGSGEISFPMVCD----DYQ------ISVLYGSKSENIL-----------KLYHCMFMMLKSACNCASHEL 673 (683)
Q Consensus 619 ----G~~~~~~s~ElR~pl~~~----~~g------~g~~~g~~~~~~~-----------k~~~~~~~~~~~~~~~~~~~~ 673 (683)
|+.++.+++|||+|+... .+. +|.+|+....... ..--++++++.++..-+++|+
T Consensus 221 ~~~gG~~~~~~~~E~r~~l~~~~~~~~~~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~~~~g~lr~d~ 300 (323)
T PF01103_consen 221 DSLGGDYYFTASAEYRFPLPKIPGSPNLYLVAFADAGNVWNDNDNFPLNSDSFTSKDNIRSSVGVGLRYDTPIGPLRFDY 300 (323)
T ss_pred cccCceEEEEEeeeeEeeccccccCCcEEEEEEEccccccccCCCcCcccccccccccccceEEEEEEEecCcEEEEEEE
Confidence 599999999999999531 232 4555554433221 223455566667766667777
Q ss_pred ccC
Q 005677 674 AEG 676 (683)
Q Consensus 674 ~~~ 676 (683)
|.+
T Consensus 301 a~~ 303 (323)
T PF01103_consen 301 AYP 303 (323)
T ss_pred EEE
Confidence 763
No 10
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=99.87 E-value=3.6e-20 Score=221.42 Aligned_cols=232 Identities=14% Similarity=0.212 Sum_probs=192.1
Q ss_pred cccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHH----HHcCCCceEeEEEEe--C
Q 005677 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD--T 202 (683)
Q Consensus 129 ~~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~V~~~~~--~ 202 (683)
-.+.+.|+|.|.+|.|+| |+.+++++|++.+. ...+++|+.|++..+++++++| .++|||++.|.+.+. .
T Consensus 84 l~~~v~e~p~I~~I~~~G--n~~~~~~~l~~~l~--~~~~~~g~~~~~~~~~~~~~~l~~~Y~~~Gy~~~~V~~~~~~~~ 159 (803)
T PRK11067 84 LLVQVKERPTIASITFSG--NKSVKDDMLKQNLE--ASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLP 159 (803)
T ss_pred EEEEEecCcEEEEEEEEC--cccCCHHHHHHHHH--hccccccccCCHHHHHHHHHHHHHHHHhcCccccEEEEEEEECC
Confidence 378999999999999999 99999999998552 1246899999999999999999 479999999976553 4
Q ss_pred CCcEEEEEEEeeCCce--EEEEEecccCCChhHHHHhhccCCC---------ccccHHHHHHHHHHHHHHHHHCCc-eeE
Q 005677 203 RDGIRLVFQVEPNQEF--HGLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FGM 270 (683)
Q Consensus 203 ~~~v~v~~~V~eG~~~--~~I~~~G~~~~~~~~L~~~~~~~~G---------~~~~~~~l~~~~~~I~~~y~~~GY-~a~ 270 (683)
++++.|+|.|+||+++ ++|.|+||..+++++|.+.+.+++| +.|+..++++++++|+++|+++|| .++
T Consensus 160 ~~~v~l~~~i~EG~~~~I~~I~f~GN~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a~ 239 (803)
T PRK11067 160 RNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFN 239 (803)
T ss_pred CCeEEEEEEEecCCeEEEEEEEEECCCCcCHHHHHHHhcCCCCcchhhhccCCccCHHHHhhhHHHHHHHHHHCCCceEE
Confidence 5678999999999875 4999999999999999999988876 679999999999999999999999 588
Q ss_pred eecEEE-e-eCc---EEEEEEEE---EEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHH--
Q 005677 271 VSGVEI-L-SGG---IIRLQVAE---AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETV-- 340 (683)
Q Consensus 271 V~~~~~-~-~~g---~v~l~V~e---~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L-- 340 (683)
|.+..+ . .+. .|++.|+| ++|++|.|. |+ ....+..+++.+.+++|++|+..++++...+|
T Consensus 240 V~~~~~~~~~~~~~v~i~~~I~eG~~~~i~~i~~~------G~---~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~ 310 (803)
T PRK11067 240 IDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVS------GN---LAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKK 310 (803)
T ss_pred ecCcEEEEcCCCceEEEEEEEeeCCcEEEEEEEEE------ec---CCCCHHHHHHhhcCCCCceeCHHHHHHHHHHHHH
Confidence 886443 2 232 37788885 689999999 98 67778889999999999999998887777655
Q ss_pred --HhCCCc-cceeeeeecCCCCCeEEEEEEEEEcCC
Q 005677 341 --LTMGIM-EDVSIIPQPAGDTGKVDLIMNVVERPS 373 (683)
Q Consensus 341 --~~lg~F-~~V~i~~~~~~~~g~v~l~i~V~E~~~ 373 (683)
.+.||+ ..|.+.+....+.+.++|++.|.|.+.
T Consensus 311 ~~~~~GY~~a~v~~~~~~~~~~~~v~i~~~v~eG~~ 346 (803)
T PRK11067 311 LLGRYGYAYPRVQTQPEINDADKTVKLHVNVDAGNR 346 (803)
T ss_pred HHHhCCCCcceeeeccccCCCCCEEEEEEEEeeCCe
Confidence 447884 344333333446788999999999985
No 11
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=99.86 E-value=3.8e-19 Score=195.12 Aligned_cols=332 Identities=18% Similarity=0.190 Sum_probs=167.3
Q ss_pred HcccCCCCCCChHhHHHHHHHHHhCCCccceeeeeecCCCCCeEEEEEEEEEcCCeeEEEee-eecCCCCCCCCcc-cEE
Q 005677 319 QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGG-GISSGITSGPLSG-LIG 396 (683)
Q Consensus 319 ~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~v~l~i~V~E~~~~~~~~g~-gy~s~~~~~~~~G-~~~ 396 (683)
.++..+|++++.++||+.+++|++++-. +|++++.|+..+|..+|.|++++.++..+.+++ ++++. ..| +.+
T Consensus 10 ~fP~~~G~~LnlrdlEQgle~lnrl~~~-~~~~~i~PG~~~G~S~i~i~~~~~~~~~~~~~~DN~Gs~-----~TG~~q~ 83 (404)
T PF03865_consen 10 AFPNRKGKPLNLRDLEQGLEQLNRLPSN-QAKIDILPGEEPGTSDIVIENQPSKPWSGSLSLDNSGSK-----STGRYQG 83 (404)
T ss_dssp -STT-TT-B--HHHHHHHHHHH-S-SSE-EEEEEEEE-SSTTEEEEEEEEEE-SS-EEEEEEEE-SSS------SS-EEE
T ss_pred cCCCCCCCCCCHHHHHHHHHHhccCCCC-cceEEEecCCCCCEEEEEEEecccCCEEEEEEEecCCcc-----ccceEEE
Confidence 4788999999999999999999999763 788889998889999999999988776554443 23332 244 678
Q ss_pred EEEEEEccCCcCCcEEEEEEEecc------eeeEEEEEEEccccCCCCCceEEEEEEEeeecCCcccCCCCCCCCceEEE
Q 005677 397 SFAYSHRNVFGRNQKLNISLERGQ------IDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIG 470 (683)
Q Consensus 397 ~~~l~~~NlfG~g~~l~~~~~~~~------~~~~~~l~y~~P~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 470 (683)
.+++...|+||.++.+++++..+. ....+.+.|+.|+.. +.+++..++..++..... . .....+...
T Consensus 84 ~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G~---~~ls~~~s~s~y~~~~~~---~-~~~~~~~G~ 156 (404)
T PF03865_consen 84 GATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYGY---WTLSLFASYSDYRYHQGL---S-YSTYDLSGD 156 (404)
T ss_dssp EEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEETT---EEEEEEEEEEEEE---SS---S-S-----EEE
T ss_pred EEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeeec---eEEEEEEEEeEEEEeecc---c-cceEEeeee
Confidence 999999999999999999997642 245788999999864 223333333322221110 0 112245666
Q ss_pred EEEEEEEEEeecCC--CeEEEEEEEEEEEEeecCCCC--c--eeccccCCceeeccccCCceeEEEeeEEEccCCCCCCc
Q 005677 471 RVTAGMEFSRPIRP--KWSGTVGLIFQHSGARDEKGN--P--IIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSS 544 (683)
Q Consensus 471 ~~~~~~~~~~~l~~--~~~~~~gl~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~d~rD~~~~P~~G~~~~~~G~~G~~ 544 (683)
....++.++|++.+ ..++++.+.+.+.+..+...+ . .-+......+.+++... ++. |..
T Consensus 157 s~~~~~~~~~~l~R~~~~k~~l~~~l~~k~~~n~i~d~~i~v~~~~lt~~~lgl~~~~~----~~~-----------g~~ 221 (404)
T PF03865_consen 157 SRSLGLRLSYVLYRSQNSKTSLSAGLSHKKSKNYINDIEIEVQSRRLTSLELGLNHSRY----LGG-----------GVL 221 (404)
T ss_dssp EEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEEE--TTS---EEEEEEEEEEEEEEEEE-----TT-----------EEE
T ss_pred EEEEEEEeeEEEEECCCceEEEEEEEEEEEcccccccceeeeccceeeEEEeccceEEE----ecC-----------cEE
Confidence 66778888888853 344555555555444332211 1 11222233333333211 110 011
Q ss_pred eeEEeeeeccCcC------------CCcceEEEEEEEEEEEEEe--cCc--eEEEEEeeeeeccCCCccCccccCCCCcc
Q 005677 545 MFVFNMEQGLPVW------------PEWLFFNRVNARARKGVEI--GPA--RLLLSLSGGHVVGNFSPHEAFAIGGTNSV 608 (683)
Q Consensus 545 ~~~~~~e~~~~~~------------~~~~~f~k~~~~~~~y~~l--~~~--~l~lr~~~G~~~g~lP~~erF~lGG~~sv 608 (683)
...+++++++++. ..+.+|.|+.+.+.++.++ .+. .+..++.+||+.+.|+.+|+|.+||.++|
T Consensus 222 ~~~l~~~~G~~~~ga~~~~~~~~~~~~~~~f~k~~l~~~~~~~~~~~~~~~~~~~~~~gQys~d~L~ssEq~siGG~~sV 301 (404)
T PF03865_consen 222 SANLSYSQGLPWFGAERDPEDADGNGPDSQFTKWSLNASLYQPFQLGNQPFSYNSSLSGQYSNDNLYSSEQFSIGGRYSV 301 (404)
T ss_dssp EEEEEEEEE-------------------EEEEEE---EEEEEEEEETTEEEEEEEEEEEEE-SS-SSSSEE--S------
T ss_pred EEeEEEEeccCccCCcCCchhccCCCcccceEEEEeehhhccceeecCccEEEEEEEEEEECCCCCChhheeccCCCceE
Confidence 1233333333221 1356899988877776665 344 46667889999899999999999999999
Q ss_pred ccccCCCccccceEEEEeEEEEEecccCCc------e--eEEEecCCCCcccc--cccccceeeeccccccccccccCcc
Q 005677 609 RGYEEGAVGSGRSYVVGSGEISFPMVCDDY------Q--ISVLYGSKSENILK--LYHCMFMMLKSACNCASHELAEGTD 678 (683)
Q Consensus 609 RGy~~~~lgpG~~~~~~s~ElR~pl~~~~~------g--~g~~~g~~~~~~~k--~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (683)
|||+.+++. ||.++.++.|+.+++..... | +|.+++.....-.. .-.+.+++++..-...++|++.|--
T Consensus 302 RGF~~~~ls-Gd~G~~~rNeLs~~~~~~~~~l~py~g~D~G~v~~~~~~~~~~~~~g~~~Gl~~~~~~~~~dl~vs~g~~ 380 (404)
T PF03865_consen 302 RGFDESSLS-GDSGWYLRNELSWPFPLGNFSLTPYLGLDYGRVRGNKNNQGWRSLAGLSAGLRLRYKQAQLDLEVSRGWP 380 (404)
T ss_dssp TT----S---SS-SS--EESEEEEEEE--SS-EEEEEEEEEEEEESSSS-EEEEEEEEEEEEEEESSSEEE---------
T ss_pred cccCCCcee-ecceEEEEEEEEeecCCCCceEEEEEEEEEEEEecCCCCCCCceEEEEEEEEEEEEcceeeeeccccccc
Confidence 999999997 99999999999988653221 1 55555433222111 1234455555555566667777776
Q ss_pred c
Q 005677 679 I 679 (683)
Q Consensus 679 ~ 679 (683)
+
T Consensus 381 l 381 (404)
T PF03865_consen 381 L 381 (404)
T ss_dssp -
T ss_pred c
Confidence 6
No 12
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.4e-18 Score=201.24 Aligned_cols=232 Identities=18% Similarity=0.301 Sum_probs=195.6
Q ss_pred cccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCCCceEeEEEE--eC
Q 005677 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV--DT 202 (683)
Q Consensus 129 ~~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~~~~--~~ 202 (683)
-.+.+.|+|.|++|.|.| |+.+++++|++.+ .+++|.+|+...+++++++|. ..|||++.|...+ ..
T Consensus 84 Lvv~V~e~p~I~~v~~~G--n~~i~~~~L~~~l-----~~~~g~~~~~~~l~~~~~~l~e~Y~~~G~~~~~v~~~~~~~~ 156 (766)
T COG4775 84 LVVTVKERPVINSVVFSG--NKSIKDDALKKNL-----KIKPGEVLNRAKLEADVEALKEAYLSRGYYSVKVTYKVTPLP 156 (766)
T ss_pred EEEEEecCCcEEEEEEeC--CccCChHHHHHhh-----ccCCCCcccHHHHHHHHHHHHHHHHhcCeecceeEEEEEECC
Confidence 378899999999999999 9999999999854 478999999999999999995 6999999997655 23
Q ss_pred CCcEEEEEEEeeCCc--eEEEEEecccCCChhHHHHhhccCC---------CccccHHHHHHHHHHHHHHHHHCCc-eeE
Q 005677 203 RDGIRLVFQVEPNQE--FHGLVCEGANVLPTKFVEDAFRDGY---------GKVVNIRRLDEVITSINGWYMERGL-FGM 270 (683)
Q Consensus 203 ~~~v~v~~~V~eG~~--~~~I~~~G~~~~~~~~L~~~~~~~~---------G~~~~~~~l~~~~~~I~~~y~~~GY-~a~ 270 (683)
++++.|.|.|+||+. +++|.|.||+.+++.+|++.+..++ ++.|+..+++.+++.|+++|.++|| -++
T Consensus 157 ~~~v~v~f~i~eG~~~~i~~I~~~Gn~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~~ 236 (766)
T COG4775 157 RNRVDVVFVINEGPSAKIKQINFEGNTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADFR 236 (766)
T ss_pred CCeEEEEEEeCCCCccceeeeEEeccccccchhhhhheeeccceeEEEEecccccChhhhhccHHHHHHHHHhCceEEEE
Confidence 689999999999987 4599999999999999988776554 3469999999999999999999999 588
Q ss_pred eecEEEee--C--c-EEEEEEEE---EEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHH-
Q 005677 271 VSGVEILS--G--G-IIRLQVAE---AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL- 341 (683)
Q Consensus 271 V~~~~~~~--~--g-~v~l~V~e---~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~- 341 (683)
|...++.. + + .|++.|.| +++++|.|+ |+ .....+.|.+.+.+++|++|+.++++++..+|.
T Consensus 237 v~s~~~~~~~~k~~~~vt~~V~EG~~y~~~~i~i~------g~---~~~~~~el~~~~~~~~g~~fn~~~i~~~~~~I~~ 307 (766)
T COG4775 237 VSSTQVSLDPDKKGVTVTYTVKEGPQYKFGSVLIE------GN---LAGVSEELEKLLKVKPGKLFNRKKIEDDADKIKE 307 (766)
T ss_pred EeeeeecccCCCccEEEEEEEccCCceEEEEEEEE------cC---ccCcHHHHHHhhccCCCceEcHHHHHHHHHHHHH
Confidence 87665533 2 1 47888885 689999999 98 566688999999999999999999999888775
Q ss_pred ---hCCC-ccceeeeeecCCCCCeEEEEEEEEEcCCeeE
Q 005677 342 ---TMGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSGGF 376 (683)
Q Consensus 342 ---~lg~-F~~V~i~~~~~~~~g~v~l~i~V~E~~~~~~ 376 (683)
+.|| |..|.+++.+..+...++|.+.|.+++...+
T Consensus 308 ~~~~~GY~~a~V~p~~~~n~~~~tv~v~~~V~~g~~~~V 346 (766)
T COG4775 308 RYARYGYAFANVSPQPDANDENKTVDVVFRVDEGDRVYV 346 (766)
T ss_pred HHHhcCceeeEeeeecccCCCCcEEEEEEEEEcCCceee
Confidence 4587 5666666666666788999999999986543
No 13
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=188.99 Aligned_cols=310 Identities=17% Similarity=0.231 Sum_probs=211.6
Q ss_pred EEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHccc-CCCCCCC--hHhHHHHHHHHHhCCCccceeeeeec----CCCCC
Q 005677 288 EAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTT-KKGQVYS--MLQGKRDVETVLTMGIMEDVSIIPQP----AGDTG 360 (683)
Q Consensus 288 e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~-~~G~~~~--~~~l~~~~~~L~~lg~F~~V~i~~~~----~~~~g 360 (683)
+.+|+.|.|. |+ .+|++.+|.+++.. .+...+. ......+..+|+++++|++|++.++. +..++
T Consensus 35 ~~~v~~V~v~------Gl---~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p~ 105 (457)
T KOG2602|consen 35 ESRVDHVIVS------GL---ERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALPG 105 (457)
T ss_pred cceeeEEEec------cc---cccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCCC
Confidence 4589999999 99 89999999999862 2222221 12334566789999999999998763 35678
Q ss_pred eEEEEEEEEEcCCeeEEEeeeecCCCCCCCCcccEEEEEEEEccCCcCCcEEEEEEEec-ceeeEEEEEEEccccCCCCC
Q 005677 361 KVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERG-QIDSIFRINYTDPWIEGDDK 439 (683)
Q Consensus 361 ~v~l~i~V~E~~~~~~~~g~gy~s~~~~~~~~G~~~~~~l~~~NlfG~g~~l~~~~~~~-~~~~~~~l~y~~P~~~~~~~ 439 (683)
..+|++.|.|.+. +....| ++.++ .--.+.+++..+|++|+|+.++.++.++ .....+.+++..|.+.+...
T Consensus 106 ~~~Vt~~v~E~kr--~tg~~G--T~~gn---~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~~ 178 (457)
T KOG2602|consen 106 GLVVTFLVTEPKR--LTGSTG--TDVGN---REGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLKT 178 (457)
T ss_pred ceeEEEEeeecch--heeecc--ccccC---CCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCCc
Confidence 8999999999887 333333 22111 1123456777899999999999999998 56789999999999876432
Q ss_pred ceEEEEEEEeeecCCcccCCCCCCCCceEEEEEEEEEEEEeecCCCeEEEEEEEEEEEEeec--CCCCceecccc-----
Q 005677 440 RTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARD--EKGNPIIKDFY----- 512 (683)
Q Consensus 440 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gl~~~~~~~~~--~~~~~~~~~~~----- 512 (683)
.+....++...+ ......++....++.+.+.++....+...+.++.-+.++.+ ......++...
T Consensus 179 --~~~~~~~~~~~d-------~~~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L~ 249 (457)
T KOG2602|consen 179 --PFSSFSIFRTQD-------WMKWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHSLK 249 (457)
T ss_pred --chhhhhhhhhhc-------ccccccccccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHHHhhHHHH
Confidence 233322222111 12445666666677777666442111111111111112211 11222233222
Q ss_pred -CCceeeccccCCceeEEEeeEEEccCCCCCCceeEEeeeeccCcCCCcceEEEEEEEEEEEEEecCc-eEEEEEeeeee
Q 005677 513 -SSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPA-RLLLSLSGGHV 590 (683)
Q Consensus 513 -~~~l~~~~d~rD~~~~P~~G~~~~~~G~~G~~~~~~~~e~~~~~~~~~~~f~k~~~~~~~y~~l~~~-~l~lr~~~G~~ 590 (683)
.+..++.+|+||..+.|++|.. +....|.+.- ..+..|.|-++++++..|+.-. ++.+++++|++
T Consensus 250 s~L~~tfv~D~Rd~~~~ptrG~~-----------~k~~~e~~g~--~~~~sf~k~e~~lq~avpl~~~~~~s~~~~~G~l 316 (457)
T KOG2602|consen 250 SSLSYTFVFDKRDSSIIPTRGIL-----------LKSTSELAGL--FGDVSFLKSELDLQKAVPLGFDATLSFSFSGGVL 316 (457)
T ss_pred HhhcceEEEeccCCcccccccce-----------eEeehhhcCc--ccchhhhhhhhhheeccccccceeeEeeEeeeee
Confidence 2445677899999999997543 3334443322 2358899999999999999877 78999999998
Q ss_pred cc----CCCccCccccCCCCccccccCCCccc--------cceEEEEeEEEEEeccc
Q 005677 591 VG----NFSPHEAFAIGGTNSVRGYEEGAVGS--------GRSYVVGSGEISFPMVC 635 (683)
Q Consensus 591 ~g----~lP~~erF~lGG~~svRGy~~~~lgp--------G~~~~~~s~ElR~pl~~ 635 (683)
.+ .++..||||+||+.+||||...+||| |++++.+.+.+-+|++.
T Consensus 317 ~~~~~~~v~I~dRFylGGps~lRGFk~~giGP~~~~~~lGG~a~~a~~~~L~~~lP~ 373 (457)
T KOG2602|consen 317 KPLGSRPVSIADRFYLGGPSDLRGFKTRGIGPKDEGDFLGGDAFVAAGAHLYFPLPF 373 (457)
T ss_pred ecCCCCccchhhhhccCCcccccccccCCcCCCCCCcccCCceeeEeeeEecccCCc
Confidence 64 46678999999999999999999997 99999999999998875
No 14
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=98.71 E-value=6.7e-08 Score=80.34 Aligned_cols=72 Identities=21% Similarity=0.457 Sum_probs=59.8
Q ss_pred eEEEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-eeEee-cEEEeeCcEEEEEEEEE
Q 005677 218 FHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVS-GVEILSGGIIRLQVAEA 289 (683)
Q Consensus 218 ~~~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~-~~~~~~~g~v~l~V~e~ 289 (683)
+++|+++|++.++.++|.+.+..+.|++++.+.|++..++|.++|+++|| .+++. +.+.+.+|.|++.|.||
T Consensus 3 i~~i~~~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G~l~i~V~eG 76 (76)
T PF08479_consen 3 IKGIRFEGNTLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDGVLTIRVVEG 76 (76)
T ss_dssp --EEEEES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTSEEEEEEE--
T ss_pred eEEEEEECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCCEEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999 77755 67778999999999875
No 15
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.69 E-value=7.1e-08 Score=80.37 Aligned_cols=72 Identities=19% Similarity=0.468 Sum_probs=62.0
Q ss_pred ceEEEEEEEeCCC-CccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCCCceEeEEEE-eCCCcEEEEE
Q 005677 137 VLISEVLVRNKDG-EELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV-DTRDGIRLVF 210 (683)
Q Consensus 137 ~~I~~V~~~G~~N-~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~~~~-~~~~~v~v~~ 210 (683)
++|.+|.|.| | +.++++.|++ .| .+++|..|++..+++++++|. +.||+++.|.... .+++.+.|+|
T Consensus 1 ~~i~~I~i~G--n~~~~~~~~l~~----~l-~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~ 73 (78)
T PF07244_consen 1 YRIGEINIEG--NLKKFSDEELRR----EL-GLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDDNTVDLTF 73 (78)
T ss_dssp CEEEEEEEES--E-SSSHHHHHHH----CH-SS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEEc--CceEeCHHHHHh----hc-CCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCEEEEEE
Confidence 5799999999 8 8899998886 34 589999999999999999998 8999999997654 3447899999
Q ss_pred EEeeC
Q 005677 211 QVEPN 215 (683)
Q Consensus 211 ~V~eG 215 (683)
.|+||
T Consensus 74 ~V~Eg 78 (78)
T PF07244_consen 74 NVDEG 78 (78)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99998
No 16
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.58 E-value=3.8e-07 Score=75.91 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=62.1
Q ss_pred ceEEEEEecc-cCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-eeEeecEEEeeCcE--EEEEEEEE
Q 005677 217 EFHGLVCEGA-NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGI--IRLQVAEA 289 (683)
Q Consensus 217 ~~~~I~~~G~-~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~~~~~~g~--v~l~V~e~ 289 (683)
++.+|.|.|+ +.++++.|++.+.+++|++|+...+++++++|.++|.++|| +++|.+....+++. |++.|+|+
T Consensus 2 ~i~~I~i~Gn~~~~~~~~l~~~l~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~~V~Eg 78 (78)
T PF07244_consen 2 RIGEINIEGNLKKFSDEELRRELGLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDDNTVDLTFNVDEG 78 (78)
T ss_dssp EEEEEEEESE-SSSHHHHHHHCHSS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEcCceEeCHHHHHhhcCCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCEEEEEEEEEeC
Confidence 4669999998 88999999998999999999999999999999999999999 89988765544453 66777764
No 17
>PLN03138 Protein TOC75; Provisional
Probab=98.50 E-value=7.6e-07 Score=102.76 Aligned_cols=150 Identities=17% Similarity=0.213 Sum_probs=109.3
Q ss_pred ccCccccceEEEEE------------EEeCCCCccChhhHHHHHHHHhh------------------------ccCCCCc
Q 005677 130 SRSDEERVLISEVL------------VRNKDGEELERKDLETEALTALK------------------------ACRANSA 173 (683)
Q Consensus 130 ~i~~~~~~~I~~V~------------~~G~~N~~~~~~~L~~~~~~~l~------------------------~~~~g~~ 173 (683)
.|+|++.+.|++|+ |+| |+.+++++|++.+....+ +++....
T Consensus 220 ~i~Eg~~~~I~~I~~i~~~~~~~~~~~~G--N~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gk 297 (796)
T PLN03138 220 SFTESTWQSADSFRCINVGLMSQSKPIEM--DEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGK 297 (796)
T ss_pred EEEeCCceeeeeeeecccccccccceeeC--CcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCCc
Confidence 78899999999999 999 999999998886643211 1112345
Q ss_pred cCHHHHHHHHHHHH----HcCCCceEeEEEEeCCCcEEEEEEEeeCCceE-EEE--------EecccCCChhHHHHhhc-
Q 005677 174 LTVREVQEDVHRII----DSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFH-GLV--------CEGANVLPTKFVEDAFR- 239 (683)
Q Consensus 174 ~~~~~l~~d~~~L~----~~GYf~a~V~~~~~~~~~v~v~~~V~eG~~~~-~I~--------~~G~~~~~~~~L~~~~~- 239 (683)
|+.+.|++|+++|. ++||..+.|..... .+.+.|+|+|.||.... +|+ ++|++ .+..|++.+.
T Consensus 298 lN~e~Lq~die~I~~~Y~d~GYafa~V~~~~~-id~g~Vtl~V~EG~i~~I~V~~~drig~~i~GNT--rD~VIRREL~~ 374 (796)
T PLN03138 298 VSARLLQRIRDRVQKWYHDEGYACAQVVNFGN-LNTNEVVCEVVEGDITKVVIQFQDKLGNVVEGNT--QLPIIDRELPK 374 (796)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCceEEEecccc-cCCceEEEEEecccEEEEEEEecccccccccCCc--cCeEEeeeccc
Confidence 99999999999984 89999998753221 22378899999999854 443 45555 4566777775
Q ss_pred -cCCCccccHHHHHHHHHHHHHHHHHCCceeEee--cEEEe-eCc--EEEEEEEE
Q 005677 240 -DGYGKVVNIRRLDEVITSINGWYMERGLFGMVS--GVEIL-SGG--IIRLQVAE 288 (683)
Q Consensus 240 -~~~G~~~~~~~l~~~~~~I~~~y~~~GY~a~V~--~~~~~-~~g--~v~l~V~e 288 (683)
+++|++|+...+++++++|. .-|||..|. +.+.. +.+ +|.+.|.|
T Consensus 375 ~lkeGd~fN~~~l~~slqRL~----~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE 425 (796)
T PLN03138 375 QLRQGHIFNIEAGKQALRNIN----SLALFSNIEVNPRPDEKNEGGIVVEIKLKE 425 (796)
T ss_pred ccCCCcccCHHHHHHHHHHHH----hCCCCceeEEEeccCCCCCCeEEEEEEEEE
Confidence 59999999999999988854 789975544 33322 223 35677776
No 18
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=98.23 E-value=1.1e-05 Score=95.11 Aligned_cols=155 Identities=18% Similarity=0.173 Sum_probs=107.1
Q ss_pred ccCccccceEEE-EEEEeCC------CCccChhhHHHHHHHHhhccCCC-CccCHHHHHHHHHHHH----HcCCCceEeE
Q 005677 130 SRSDEERVLISE-VLVRNKD------GEELERKDLETEALTALKACRAN-SALTVREVQEDVHRII----DSGYFCSCMP 197 (683)
Q Consensus 130 ~i~~~~~~~I~~-V~~~G~~------N~~~~~~~L~~~~~~~l~~~~~g-~~~~~~~l~~d~~~L~----~~GYf~a~V~ 197 (683)
.+++.|+|.|++ |+|+|.. |..++.+.|++. + ..+.| ..++...|++++++|. ++||..|.|.
T Consensus 173 ~~~V~enP~~~~~v~~~g~~~~~~~~~~~lp~~~l~e~----~-~~~~G~~~ln~~~L~~~~~~I~~~Y~~~GY~~A~V~ 247 (718)
T TIGR00992 173 DMEVKEKPEFTRRLEIRYKRRIAEARPCLLPQEVVDET----F-GMLYGQGIVSARLLQEIRDRVQEWYHNEGYACAQVV 247 (718)
T ss_pred EEEEecCCEEEEEEEEeecccccccccccCCHHHHHHH----h-ccccCCeecCHHHHHHHHHHHHHHHHHCCceeEEEe
Confidence 778889999999 9998731 234556666552 2 46788 9999999999999884 7999999885
Q ss_pred EEEeCCCcEEEEEEEeeCCc--eE--EEEEeccc---CCChhHHHHhhc--cCCCccccHHHHHHHHHHHHHHHHHCCce
Q 005677 198 VAVDTRDGIRLVFQVEPNQE--FH--GLVCEGAN---VLPTKFVEDAFR--DGYGKVVNIRRLDEVITSINGWYMERGLF 268 (683)
Q Consensus 198 ~~~~~~~~v~v~~~V~eG~~--~~--~I~~~G~~---~~~~~~L~~~~~--~~~G~~~~~~~l~~~~~~I~~~y~~~GY~ 268 (683)
........ .|+|.|.||+. ++ .|...|+. ...+..+++.+. +++|++|+..+|++.+++|. +-|||
T Consensus 248 ~~~~~~~~-~V~l~V~EG~i~~I~V~~i~~~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~Le~~~~rL~----~lg~F 322 (718)
T TIGR00992 248 NFGNLNTD-EVVCEVVEGDITNLQIQFFDKLGNVVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNIN----SLGLF 322 (718)
T ss_pred ccCcCCCC-EEEEEEeccceeEEEEEEecccCccccCccchHHHHHHHHhccCCCCcCCHHHHHHHHHHHH----cCCCc
Confidence 43222222 89999999993 22 23335654 334567888888 89999999999999888866 44564
Q ss_pred --eEeecEEEe-eCcE--EEEEEEEEEEeeE
Q 005677 269 --GMVSGVEIL-SGGI--IRLQVAEAEVNNI 294 (683)
Q Consensus 269 --a~V~~~~~~-~~g~--v~l~V~e~~I~~I 294 (683)
++|.+.+.. ..+. |.+.|.|..-..+
T Consensus 323 ~~V~V~~~p~~~~~g~v~V~V~V~E~~~~s~ 353 (718)
T TIGR00992 323 SNIEVNPRPDEMNEGEIIVEIKLKELEQKSA 353 (718)
T ss_pred ccceeeccCCCCCCCeEEEEEEEEECCCCce
Confidence 556544332 3343 5667777554433
No 19
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00053 Score=78.30 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=112.0
Q ss_pred ccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHH----HHcCCCceEeEEEEeCCCcEEE
Q 005677 133 DEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVDTRDGIRL 208 (683)
Q Consensus 133 ~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~V~~~~~~~~~v~v 208 (683)
|.++..|+.|.++| |..++..+|++.+ .-..|..+....|..-.++| +++||--+.+-...++-..-.|
T Consensus 69 E~~~f~I~~i~l~g--~~~~~~~~l~~~~-----~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G~l 141 (554)
T COG2831 69 ETPCFPINRIELEG--NTLLDALELQAIL-----APYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSGTL 141 (554)
T ss_pred CCceEEEEEEEEeC--CcccChHHHHHhh-----HHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCCeE
Confidence 33578999999999 8999999988733 23567888877777666655 3899998887655333333478
Q ss_pred EEEEeeCCceEEEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCceeEeecEEEeeCc--EEEEEE
Q 005677 209 VFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGG--IIRLQV 286 (683)
Q Consensus 209 ~~~V~eG~~~~~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~a~V~~~~~~~~g--~v~l~V 286 (683)
.++|.||. +.+|++.|........+...++...|++++..+|++..+.+...-..+ =-+.+.+-+ ..| .|.+.+
T Consensus 142 ~l~VveG~-i~~i~i~g~~~~~~~~~~~~~p~~~g~~Ln~~~lEq~l~~l~~~P~~q-a~~~l~pg~--~~G~S~l~i~~ 217 (554)
T COG2831 142 RLQVVEGR-IEDIRITGDSDLRSVALRSLFPAHRGDPLNLRDLEQGLELLNRLPGVQ-ADAELVPGS--EPGESDLVIKV 217 (554)
T ss_pred EEEEeceE-eeeEEEcCCCccchhhHHhhccccCCCCCCHHHHHHHHHHhhhCcccc-ceeEEccCC--CCCccEEEEEe
Confidence 88999996 778999999876667788888999999999999999988877655443 012222222 223 577888
Q ss_pred EEEEEeeEEEEEc
Q 005677 287 AEAEVNNISIRFL 299 (683)
Q Consensus 287 ~e~~I~~I~I~~~ 299 (683)
.+.+-=++.+..+
T Consensus 218 ~~~~~~~~~~~~D 230 (554)
T COG2831 218 QQGKPWRVSASAD 230 (554)
T ss_pred eeCCCeEEEEEec
Confidence 7765555666544
No 20
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=97.00 E-value=0.0065 Score=69.71 Aligned_cols=129 Identities=15% Similarity=0.257 Sum_probs=96.9
Q ss_pred ccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHH----HHcCCCceEeEE---EE-eCCCcE
Q 005677 135 ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPV---AV-DTRDGI 206 (683)
Q Consensus 135 ~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~V~~---~~-~~~~~v 206 (683)
.++.+..+.+.| ..+.+..++...... ..++|..++...+......+ .++||+++.+.. .+ ...+.+
T Consensus 114 ~~i~~~~~v~~G---~a~~d~~~~~~~~~~--~~~~G~~~~~~~~~n~k~~i~~~~~~~gy~~a~~~~~r~~v~~~~~~a 188 (594)
T COG0729 114 TPIAVVIVVLPG---PAFTDGDYRLLGDAA--GPKEGEDLNQGTYENAKSSIVRALLRKGYFLARFTKSRLVVDPATHTA 188 (594)
T ss_pred cccceeeeeccc---ccccChhhhhhhhhh--ccccCCccccchhhhhHHHHHHHHHHcCcchhcccccccccccccceE
Confidence 555556666677 444454555433211 24688888888887766655 489999999843 23 345789
Q ss_pred EEEEEEeeCCceE--EEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCceeEee
Q 005677 207 RLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVS 272 (683)
Q Consensus 207 ~v~~~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~a~V~ 272 (683)
.+.+.++.|++|. .|.++|...++++.++..+..+.|++|..+.|.+ +++.|++.+||..|.
T Consensus 189 ~~~~~~dsG~~y~~g~v~~~g~~r~~~~~~~~~~~~~~G~~Y~~~~l~~----~~~rl~~~~~F~sv~ 252 (594)
T COG0729 189 DVDLNYDSGRRYRFGPVTVEGSQRIDEEYLQNLVPFKYGLPYDPEDLAE----LNQRLRQTGYFSSVV 252 (594)
T ss_pred EEEEeecccceEEeCcEEEccceecCHHHHhhccccCCCCcCCHHHHHH----HHHHHhhcCceeeEE
Confidence 9999999999987 9999999988999999999999999999888876 556688999975433
No 21
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=96.24 E-value=0.024 Score=46.87 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=47.4
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCCCceEeEEEEeC-CCcEEEEEEE
Q 005677 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVDT-RDGIRLVFQV 212 (683)
Q Consensus 138 ~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~~~~~~-~~~v~v~~~V 212 (683)
.|++|.|+| |..++.++|.+.+ .-..|..++...+++..++|. ++||.-+.+.+...+ .++ .|++.|
T Consensus 2 ~i~~i~~~G--~~~~~~~~l~~~~-----~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G-~l~i~V 73 (76)
T PF08479_consen 2 PIKGIRFEG--NTLLPEEELQAIL-----APYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDG-VLTIRV 73 (76)
T ss_dssp ---EEEEES---TSSSCCHHHHHH-----GGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTS-EEEEEE
T ss_pred CeEEEEEEC--CCcCCHHHHHHHH-----HHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCC-EEEEEE
Confidence 589999999 8999999988743 346799999999998888773 899999988664432 333 578888
Q ss_pred eeC
Q 005677 213 EPN 215 (683)
Q Consensus 213 ~eG 215 (683)
.||
T Consensus 74 ~eG 76 (76)
T PF08479_consen 74 VEG 76 (76)
T ss_dssp E--
T ss_pred EcC
Confidence 887
No 22
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=90.31 E-value=0.94 Score=36.27 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=51.6
Q ss_pred EEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCccceeeeeecCCCCCeEEEEEEEE
Q 005677 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369 (683)
Q Consensus 290 ~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~v~l~i~V~ 369 (683)
.|.+|.|. |+ .......|...+.+..|+.+-.-+..+..++|..+++.+.|.+.-.- +++ |.|.|+
T Consensus 2 ~v~~I~V~------G~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~p~V~~v~V~r~~---P~~--l~I~V~ 67 (69)
T PF08478_consen 2 RVKKIEVS------GN---SYLSKEEILQALGIQKGKNLFSLDLKKIEQRLEKLPWVKSVSVSRRF---PNT--LEIKVK 67 (69)
T ss_dssp S--EEEEE------S----SSS-HHHHHHHHCTTSTTTCCCSHHHHHHHCCCCTTTEEEEEEEEET---TTE--EEEEEE
T ss_pred CccEEEEE------CC---CcCCHHHHHHHhCcCCCCeEEEECHHHHHHHHHcCCCEEEEEEEEeC---CCE--EEEEEE
Confidence 47789999 99 89999999999999988887777778888889899999999987653 454 566677
Q ss_pred Ec
Q 005677 370 ER 371 (683)
Q Consensus 370 E~ 371 (683)
|+
T Consensus 68 Er 69 (69)
T PF08478_consen 68 ER 69 (69)
T ss_dssp E-
T ss_pred eC
Confidence 64
No 23
>PRK05529 cell division protein FtsQ; Provisional
Probab=81.82 E-value=7.7 Score=40.02 Aligned_cols=72 Identities=18% Similarity=0.400 Sum_probs=58.7
Q ss_pred EEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCccceeeeeecCCCCCeEEEEEE
Q 005677 288 EAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMN 367 (683)
Q Consensus 288 e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~v~l~i~ 367 (683)
-..|.+|+|. |+ ..+..+.|...+....|+.+-.-++++..++|..+.+.++|.+.-.. +++ |.|+
T Consensus 60 ~~~v~~I~V~------Gn---~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~---P~t--l~I~ 125 (255)
T PRK05529 60 LLALRSIEVA------GN---MRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKP---PGT--IVVR 125 (255)
T ss_pred ceEEEEEEEE------CC---ccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeC---CCE--EEEE
Confidence 4678999999 99 78999999999988888877666667777888899999999987663 344 5788
Q ss_pred EEEcCC
Q 005677 368 VVERPS 373 (683)
Q Consensus 368 V~E~~~ 373 (683)
|+|+.+
T Consensus 126 V~Er~p 131 (255)
T PRK05529 126 VVERVP 131 (255)
T ss_pred EEEeee
Confidence 899876
No 24
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=61.62 E-value=16 Score=28.92 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=34.5
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCCCceEeEEEEeCCCcEEEEEEEee
Q 005677 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEP 214 (683)
Q Consensus 138 ~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~V~~~~~~~~~v~v~~~V~e 214 (683)
.|++|.|.| |+.+++++|.+.+ ....|..+-.-...+-.++|....|-+. +.+...-++ .|.+.|.|
T Consensus 2 ~v~~I~V~G--~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~l~~~p~V~~-v~V~r~~P~--~l~I~V~E 68 (69)
T PF08478_consen 2 RVKKIEVSG--NSYLSKEEILQAL-----GIQKGKNLFSLDLKKIEQRLEKLPWVKS-VSVSRRFPN--TLEIKVKE 68 (69)
T ss_dssp S--EEEEES---SSS-HHHHHHHH-----CTTSTTTCCCSHHHHHHHCCCCTTTEEE-EEEEEETTT--EEEEEEEE
T ss_pred CccEEEEEC--CCcCCHHHHHHHh-----CcCCCCeEEEECHHHHHHHHHcCCCEEE-EEEEEeCCC--EEEEEEEe
Confidence 588999999 9999999999744 3455655433333333334434444432 122222344 45555655
No 25
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=60.87 E-value=25 Score=36.60 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=59.0
Q ss_pred EEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCccceeeeeecCCCCCeEEEEEEE
Q 005677 289 AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNV 368 (683)
Q Consensus 289 ~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~v~l~i~V 368 (683)
..|..|.++ || ..+.+..|++.+.+..+..+=.-++++..++|..+...++|.+.-+- +++ +.|.|
T Consensus 60 ~~i~~v~v~------Gn---~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~~---Pnt--v~I~v 125 (269)
T COG1589 60 FPIRKVSVS------GN---NQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQF---PNT--LEIEV 125 (269)
T ss_pred ccceEEEEe------cC---cccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEeC---CCc--EEEEE
Confidence 368899999 99 67779999999999998887777888888999999999999987642 344 57888
Q ss_pred EEcCC
Q 005677 369 VERPS 373 (683)
Q Consensus 369 ~E~~~ 373 (683)
+|+.+
T Consensus 126 ~Er~p 130 (269)
T COG1589 126 VEREP 130 (269)
T ss_pred EEeee
Confidence 99876
No 26
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=53.50 E-value=3.2e+02 Score=29.51 Aligned_cols=27 Identities=7% Similarity=0.288 Sum_probs=13.8
Q ss_pred EEEEEEEeecCCCeEEEEEEEEEEEEe
Q 005677 473 TAGMEFSRPIRPKWSGTVGLIFQHSGA 499 (683)
Q Consensus 473 ~~~~~~~~~l~~~~~~~~gl~~~~~~~ 499 (683)
.+++.+.|.+.+++.+.+.+.|++.+.
T Consensus 298 ~~~~~~~h~~~~~l~~~~~~~~~~~~y 324 (381)
T PF10082_consen 298 SVSLGWTHQLTPRLSLSLSAGYENRDY 324 (381)
T ss_pred EEEEEEEEEeeeeEEEEEEEEEEEeEc
Confidence 344444555555555555555555444
No 27
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=49.70 E-value=2.1e+02 Score=33.75 Aligned_cols=39 Identities=5% Similarity=-0.015 Sum_probs=32.9
Q ss_pred CCCceEEEEEEEEEEEEeecCCCeEEEEEEEEEEEEeec
Q 005677 463 DNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARD 501 (683)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~gl~~~~~~~~~ 501 (683)
..+++......+.+...|++.+++.+.+.+.||+....|
T Consensus 562 ~~pd~~~~~h~l~~~~~y~ls~~~~lrl~y~yEr~~~~D 600 (637)
T PF11854_consen 562 PYPDYYSRQHNLNLYARYQLSKNMSLRLDYRYERYSDTD 600 (637)
T ss_pred CCCCceeeEEEEEEEEEEEeCCCeEEEEEEEEEeeeccc
Confidence 456777888888999999999999999999999886654
No 28
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=49.36 E-value=14 Score=31.14 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=41.9
Q ss_pred eeCcE--EEEEEEEEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCccce
Q 005677 277 LSGGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDV 349 (683)
Q Consensus 277 ~~~g~--v~l~V~e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V 349 (683)
.+.|. |.+.|..+.|.+|.|. |. -.....|...-..-.|.+|+.+.+.+.+..+.-..+|..+
T Consensus 13 f~~G~v~v~~~V~~G~I~~i~i~------gD----f~~~~~i~~le~~L~G~~~~~~~i~~~l~~~~~~~~~~~~ 77 (86)
T PF10437_consen 13 FPWGTVEVHLNVKNGIIKDIKIY------GD----FFGPEDIEELEEALIGCPYDREAIKEALNSVDLEDYFGNI 77 (86)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEE------EC----BS-CCCHHHHHHHHTTCBSSHHHHHHHHHHCHGGGTCCTH
T ss_pred cCCceEEEEEEEECCEEEEEEEE------CC----CCCchHHHHHHHHHHhcCCCHHHHHHHHHHhCHhhccccC
Confidence 34465 5567779999999999 65 2221223332233379999999999999888655666543
No 29
>PRK05529 cell division protein FtsQ; Provisional
Probab=45.47 E-value=1.1e+02 Score=31.45 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=43.4
Q ss_pred cccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCc---cCHHHHHHHHHHHHHcCCCceEeEEEEeCCCcEEEEE
Q 005677 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSA---LTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVF 210 (683)
Q Consensus 134 ~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~---~~~~~l~~d~~~L~~~GYf~a~V~~~~~~~~~v~v~~ 210 (683)
.+...|++|+|+| |+.++.++|++.+ ....|.. ++...+++. |.+.-+-+. +.+...-.-.|.+
T Consensus 58 Sp~~~v~~I~V~G--n~~vs~~eI~~~~-----~~~~g~~l~~vd~~~~~~~---l~~~P~V~s---a~V~r~~P~tl~I 124 (255)
T PRK05529 58 SPLLALRSIEVAG--NMRVKPQDIVAAL-----RDQFGKPLPLVDPETVRKK---LAAFPLIRS---YSVESKPPGTIVV 124 (255)
T ss_pred CCceEEEEEEEEC--CccCCHHHHHHHh-----cccCCCcceeECHHHHHHH---HhcCCCEeE---EEEEEeCCCEEEE
Confidence 4678899999999 8999999999743 2445544 344444333 333333321 2222112235667
Q ss_pred EEeeCCceE
Q 005677 211 QVEPNQEFH 219 (683)
Q Consensus 211 ~V~eG~~~~ 219 (683)
+|.|-+++-
T Consensus 125 ~V~Er~pvA 133 (255)
T PRK05529 125 RVVERVPLA 133 (255)
T ss_pred EEEEeeeEE
Confidence 788888753
No 30
>PF15603 Imm45: Immunity protein 45
Probab=40.56 E-value=52 Score=27.65 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=41.5
Q ss_pred EEEEEEeeCCceE---EEEEeccc-----CCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc
Q 005677 207 RLVFQVEPNQEFH---GLVCEGAN-----VLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL 267 (683)
Q Consensus 207 ~v~~~V~eG~~~~---~I~~~G~~-----~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY 267 (683)
.+.|.+.+|..++ +.-+.++. ++-...+...-++..+.+++...++...++|.+++.++|.
T Consensus 9 ~i~~el~~G~~~~~~GE~l~~~~~~~~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~ 77 (82)
T PF15603_consen 9 YITFELEEGARRKAQGEMLLTGNDNDGDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGM 77 (82)
T ss_pred ceEEEecCCEEEEEeeeEEEeccCCCcCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCce
Confidence 4566777776654 33333221 1112334445567788899999999999999999999986
No 31
>PRK10775 cell division protein FtsQ; Provisional
Probab=29.95 E-value=1.8e+02 Score=30.46 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=49.9
Q ss_pred EEeeEEEEEcccCCCCCCCCCCCHHHHHHHc-cc-CCCCCCChHhHHHHHHHHHhCCCccceeeeeecCCCCCeEEEEEE
Q 005677 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQL-TT-KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMN 367 (683)
Q Consensus 290 ~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l-~~-~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~v~l~i~ 367 (683)
.|.+|.|. |+. ..+....|+..+ .. .+|..|+ -+++...++|.+++...+|.|.-.- +++ |.|.
T Consensus 57 pl~~V~V~------G~~--~~~~~~~I~~~i~~~~~~g~f~~-~Dl~~i~~~l~~lPWV~~a~VrR~w---Pdt--L~V~ 122 (276)
T PRK10775 57 PLSKLVVT------GER--HYTTNDDIRQAILALGAPGTFMT-QDVNIIQQQIERLPWIKQVSVRKQW---PDE--LKIH 122 (276)
T ss_pred ceeEEEEe------CCe--eeCCHHHHHHHHhhccCCCCceE-EcHHHHHHHHHcCCCeeEEEEEEeC---CCc--EEEE
Confidence 56678999 882 346677777765 32 5677663 4677778888999999999887653 233 6788
Q ss_pred EEEcCC
Q 005677 368 VVERPS 373 (683)
Q Consensus 368 V~E~~~ 373 (683)
|+|+.+
T Consensus 123 V~Er~P 128 (276)
T PRK10775 123 LVEYVP 128 (276)
T ss_pred EEEeec
Confidence 899877
No 32
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=29.84 E-value=6.9e+02 Score=29.51 Aligned_cols=35 Identities=3% Similarity=-0.114 Sum_probs=27.4
Q ss_pred CCceEEEEEEEEEEEEeecCCCeEEEEEEEEEEEE
Q 005677 464 NSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSG 498 (683)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gl~~~~~~ 498 (683)
.+.|....+.+.+...|.+.+++.+.+.+.+++..
T Consensus 575 ~pdy~~~~~~l~l~a~Y~~~~~l~l~l~~~~eny~ 609 (649)
T TIGR03509 575 YPDYFSNQHRLKLYGKYQLSKSSSLRLDYRYERYS 609 (649)
T ss_pred CCcccceEEEEEEEEEEecCCCeEEEEEEEEEEEe
Confidence 45666667888999999999999988888766653
No 33
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=29.05 E-value=7.9e+02 Score=26.83 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=0.0
Q ss_pred eEEEeeeecCCCCCCCCcccEEEEEEEEccCCcCCcEEEEEEEecce--------eeEEEEEEEccccCC------CCCc
Q 005677 375 GFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQI--------DSIFRINYTDPWIEG------DDKR 440 (683)
Q Consensus 375 ~~~~g~gy~s~~~~~~~~G~~~~~~l~~~NlfG~g~~l~~~~~~~~~--------~~~~~l~y~~P~~~~------~~~~ 440 (683)
.+.+|+-|... ..+++++.|+.+--+............... .....+....|.... -..+
T Consensus 210 g~~lG~~y~~~------~~~~lG~sY~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~ 283 (427)
T PF03349_consen 210 GFNLGALYKPN------DNLRLGLSYRSPIWHDLDGDATFSISSSFAGPGAAGGSTADGEVDLDLPASLSLGVAYRFTDK 283 (427)
T ss_dssp EEEEEEEEECC------TTEEEEEEEE--BEEEEEEEEEEEEECTTCCCCH-TTSEEEEEEEEEB-EEEEEEEEEESSSS
T ss_pred EEEEEEEEEeC------CCeEEEEEEeeeeEEeeeceEEEecccccccccccccccccceeeeeeceeEEEEEEEecCCC
Q ss_pred eEEEEEEEeeecCCcccCCCCCCCCceEEE------------------------EEEEEEEEEeecCCCeEEEEEEEEEE
Q 005677 441 TSRTIMVQNSRTPGTHVHGNQPDNSSLTIG------------------------RVTAGMEFSRPIRPKWSGTVGLIFQH 496 (683)
Q Consensus 441 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~gl~~~~ 496 (683)
+.+.+.+.+.+ +..++.. .+.+.+++.|.+++.|.+.+|+.|+.
T Consensus 284 ~~l~~d~~~~~------------WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~~l~lr~G~~y~~ 351 (427)
T PF03349_consen 284 LLLSADYEWTD------------WSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFNDKLTLRAGYAYDS 351 (427)
T ss_dssp EEEEEEEEEEE------------GGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred EEEEEEEEEEE------------hhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCcCEEEEEEEEEec
Q ss_pred EEeecCCCCceeccccCCceeec
Q 005677 497 SGARDEKGNPIIKDFYSSPLTAS 519 (683)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~l~~~ 519 (683)
.-+.+...++.+.+.....+++.
T Consensus 352 sp~~~~~~~~~~p~~~~~~~s~G 374 (427)
T PF03349_consen 352 SPIPDETRDPLLPDTDRHWLSAG 374 (427)
T ss_dssp -SS-CCC-BSSS--SSEEEEEEE
T ss_pred cccCccccchhhccCCcEEEEEe
No 34
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=28.91 E-value=1.3e+02 Score=25.08 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=36.8
Q ss_pred CCcEEEEEEEeeCCceEEEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHH
Q 005677 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSI 258 (683)
Q Consensus 203 ~~~v~v~~~V~eG~~~~~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I 258 (683)
.+.+.|.++|+.| .+++|+|.|+-... ..+.++-..-.|.+|+.+.+.+..+.+
T Consensus 15 ~G~v~v~~~V~~G-~I~~i~i~gDf~~~-~~i~~le~~L~G~~~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 15 WGTVEVHLNVKNG-IIKDIKIYGDFFGP-EDIEELEEALIGCPYDREAIKEALNSV 68 (86)
T ss_dssp TEEEEEEEEEETT-EEEEEEEEECBS-C-CCHHHHHHHHTTCBSSHHHHHHHHHHC
T ss_pred CceEEEEEEEECC-EEEEEEEECCCCCc-hHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 3678899999644 58889999975432 223333333378999999988877665
No 35
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=26.89 E-value=1.4e+02 Score=30.91 Aligned_cols=119 Identities=11% Similarity=0.123 Sum_probs=63.2
Q ss_pred cceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCc---cCHHHHHHHHHHHHHcCCCceEeEEEEeCCCcEEEEEEE
Q 005677 136 RVLISEVLVRNKDGEELERKDLETEALTALKACRANSA---LTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQV 212 (683)
Q Consensus 136 ~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~---~~~~~l~~d~~~L~~~GYf~a~V~~~~~~~~~v~v~~~V 212 (683)
...|++|.++| |..+++++|++.+ ....+.. +|...+++.++.+ -+-.. +.+.-.-++ +|.+.|
T Consensus 59 ~~~i~~v~v~G--n~~~s~~~I~~~~-----~l~~~~~~~~ld~~~~~~~i~~~---PwVk~-a~V~r~~Pn--tv~I~v 125 (269)
T COG1589 59 YFPIRKVSVSG--NNQVSEEDILKAL-----GLDGGTSFLTLDLNAIRENIEKL---PWVKS-AEVRRQFPN--TLEIEV 125 (269)
T ss_pred CccceEEEEec--CcccCHHHHHHHh-----hhccCCceEEEcHHHHHHHHHhC---CCeEE-EEEEEeCCC--cEEEEE
Confidence 35799999999 9999999998754 2333333 5555555555543 33321 122112233 466678
Q ss_pred eeCCceE---------EEEEecccCCChhHHHH--hhccCCCccccHHHHHHHHHHHHHHHHHCCc
Q 005677 213 EPNQEFH---------GLVCEGANVLPTKFVED--AFRDGYGKVVNIRRLDEVITSINGWYMERGL 267 (683)
Q Consensus 213 ~eG~~~~---------~I~~~G~~~~~~~~L~~--~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY 267 (683)
.|-+++- -|.-.|........... .+..-.|-......+.+..+.+..+.+..++
T Consensus 126 ~Er~piA~w~~~~~~~~i~~~G~~~~~~~~~~~~~~lp~~~g~~~~~~~v~~~~~~~~~~~~~~~~ 191 (269)
T COG1589 126 VEREPIAYWQRNDDYHLIDENGNLFIVPSDRPKLPVLPLLVGPEGADPKVKALLEQLSALLALLGE 191 (269)
T ss_pred EEeeeEEEEecCCCcceEcCCCcEEeccCCcccccceeeccCCchhhHHHHHHHHHHHHHHHhhcc
Confidence 8888753 12224431111111111 1233345344455555556666667777777
No 36
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=24.39 E-value=2.7e+02 Score=29.75 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=36.9
Q ss_pred CcE--EEEEEEEEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHH
Q 005677 279 GGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 341 (683)
Q Consensus 279 ~g~--v~l~V~e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~ 341 (683)
.|. +.+.|..+.|.++.|. |. -..+..+......-.|.+|+.+.+.+.+..+.
T Consensus 257 ~G~v~i~l~v~~g~I~~~~i~------gD----f~~~~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 311 (324)
T TIGR00545 257 AGGFELHVQVEKGKIVDCKFF------GD----FLSVADITPVTNRLIGQKYDYDTFAKELENLD 311 (324)
T ss_pred CCcEEEEEEEeCCEEEEEEEE------CC----CCCcccHHHHHHHhCCCccCHHHHHHHHHhhh
Confidence 354 4566778999999999 75 33333343333333699999999998887764
No 37
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=22.92 E-value=2.5e+02 Score=30.87 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=45.2
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCc---cCHHHHHHHHHHHH-HcCCCceEeEEEEeCCCcEEEEEEEe
Q 005677 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSA---LTVREVQEDVHRII-DSGYFCSCMPVAVDTRDGIRLVFQVE 213 (683)
Q Consensus 138 ~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~---~~~~~l~~d~~~L~-~~GYf~a~V~~~~~~~~~v~v~~~V~ 213 (683)
.|=.|+|.| |...++.+|++.+. .+ ++++|.. +|...+++.+..-. +--| |.+.+ .+.++.++|.
T Consensus 104 fIW~IeI~G--n~~~t~~~i~~~L~-e~-Gi~~G~~k~~id~~~ie~~l~~~~~~i~W----V~v~i---~GTrl~i~v~ 172 (382)
T TIGR02876 104 FIWKIDITG--VKGETPYEIRKQLK-EM-GIKPGVWKFSVDVYKLERKLLDRVPEIMW----AGVRV---RGTTLVIKVV 172 (382)
T ss_pred eEEEEEEEC--CCCCCHHHHHHHHH-Hc-CCCcCeeeCCCCHHHHHHHHHhhCCCcEE----EEEEE---EeEEEEEEEE
Confidence 578999999 99999999998662 22 6788855 79888887555432 1111 23333 2456777777
Q ss_pred eCC
Q 005677 214 PNQ 216 (683)
Q Consensus 214 eG~ 216 (683)
|..
T Consensus 173 Ek~ 175 (382)
T TIGR02876 173 EKQ 175 (382)
T ss_pred ecC
Confidence 764
No 38
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=22.25 E-value=3.4e+02 Score=29.79 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=47.2
Q ss_pred EEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHc---ccCCCCC---CChHhHHHHHHHHHhCCCccceeeeeecCCCCCe
Q 005677 288 EAEVNNISIRFLDRKTGEPTKGKTRPETILRQL---TTKKGQV---YSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGK 361 (683)
Q Consensus 288 e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l---~~~~G~~---~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~ 361 (683)
-..|=+|.|. || ....+..|+..+ .+++|.. +|.+.|++.+. .+.+-+..|.++..-
T Consensus 102 S~fIW~IeI~------Gn---~~~t~~~i~~~L~e~Gi~~G~~k~~id~~~ie~~l~--~~~~~i~WV~v~i~G------ 164 (382)
T TIGR02876 102 SNFIWKIDIT------GV---KGETPYEIRKQLKEMGIKPGVWKFSVDVYKLERKLL--DRVPEIMWAGVRVRG------ 164 (382)
T ss_pred hheEEEEEEE------CC---CCCCHHHHHHHHHHcCCCcCeeeCCCCHHHHHHHHH--hhCCCcEEEEEEEEe------
Confidence 4466689999 99 777787777665 5889987 78888886543 455666777766541
Q ss_pred EEEEEEEEEcC
Q 005677 362 VDLIMNVVERP 372 (683)
Q Consensus 362 v~l~i~V~E~~ 372 (683)
..+.|+|.|+.
T Consensus 165 Trl~i~v~Ek~ 175 (382)
T TIGR02876 165 TTLVIKVVEKQ 175 (382)
T ss_pred EEEEEEEEecC
Confidence 45677777763
No 39
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=21.95 E-value=7.1e+02 Score=23.89 Aligned_cols=32 Identities=28% Similarity=0.128 Sum_probs=19.3
Q ss_pred EEEEEEEEEEEEEecCceEEEEEeeeeeccCCC
Q 005677 563 FNRVNARARKGVEIGPARLLLSLSGGHVVGNFS 595 (683)
Q Consensus 563 f~k~~~~~~~y~~l~~~~l~lr~~~G~~~g~lP 595 (683)
=+++......-++|.+. |.+++...+...+.|
T Consensus 160 ~~~~~~~~~l~~~l~~~-l~l~~~~~~~yds~p 191 (210)
T PF04338_consen 160 DYRVNSETGLKVKLTKN-LSLSLSYNYDYDSNP 191 (210)
T ss_pred CeEEEEEEEEEEEEecc-EEEEEEEEEEEecCC
Confidence 35566666777777665 666665555554434
No 40
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=20.59 E-value=6.3e+02 Score=22.72 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=22.7
Q ss_pred EEEEEEEEEEEEeecCCCeEEEEEEEEEEE
Q 005677 468 TIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (683)
Q Consensus 468 ~~~~~~~~~~~~~~l~~~~~~~~gl~~~~~ 497 (683)
....+.+++++.++++++|.+.+++++...
T Consensus 127 ~~~~~~~g~G~~y~~~~~~~l~~~y~~~~~ 156 (176)
T PF13505_consen 127 SGFGFGLGAGVEYNISDNFSLNAEYRYTFY 156 (176)
T ss_dssp EEEEEEEEEEEEEESSTTEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEEEECCCEEEEEEEEEEEE
Confidence 344556777888999999999888887544
Done!