Query 005677
Match_columns 683
No_of_seqs 290 out of 2241
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 04:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 100.0 6.3E-39 2.2E-43 365.8 44.4 436 212-675 50-530 (554)
2 3mc9_A ALR2269 protein; polype 100.0 2.7E-28 9.3E-33 257.5 17.1 235 130-372 55-308 (316)
3 2x8x_X TLR1789 protein, OMP85; 100.0 6.7E-27 2.3E-31 236.4 24.7 231 134-373 2-235 (235)
4 2qdf_A OMP85, outer membrane p 99.9 5E-25 1.7E-29 235.1 24.8 233 130-375 69-332 (335)
5 3efc_A OMP85, outer membrane p 99.9 2.7E-24 9.3E-29 234.6 21.6 232 130-374 68-330 (395)
6 3efc_A OMP85, outer membrane p 99.9 8.6E-25 3E-29 238.6 12.4 211 130-356 151-388 (395)
7 2qdf_A OMP85, outer membrane p 99.8 2.9E-19 1E-23 190.4 23.3 220 135-375 6-251 (335)
8 3q6b_A Outer membrane protein 99.8 3E-19 1E-23 174.4 17.4 151 211-370 28-189 (189)
9 3q6b_A Outer membrane protein 99.5 1.4E-12 4.6E-17 127.2 18.2 132 130-272 28-168 (189)
10 2qdz_A TPSB transporter FHAC; 99.2 9.1E-10 3.1E-14 124.9 23.5 262 131-451 50-336 (554)
11 2x8x_X TLR1789 protein, OMP85; 99.2 3.7E-10 1.3E-14 113.2 15.7 147 131-289 71-233 (235)
12 3mc9_A ALR2269 protein; polype 99.0 5.7E-09 2E-13 109.7 15.1 155 211-378 55-226 (316)
13 2vh1_A FTSQ, cell division pro 69.2 14 0.00046 35.6 8.3 69 291-373 1-72 (220)
14 2vh2_A FTSQ, cell division pro 62.7 16 0.00054 36.1 7.5 71 289-373 26-98 (255)
15 2vh1_A FTSQ, cell division pro 31.0 1.2E+02 0.004 28.7 7.7 72 139-219 1-74 (220)
16 2vh2_A FTSQ, cell division pro 23.7 1.1E+02 0.0038 29.8 6.1 77 133-218 22-99 (255)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=100.00 E-value=6.3e-39 Score=365.81 Aligned_cols=436 Identities=12% Similarity=0.053 Sum_probs=316.4
Q ss_pred Eee---CCceE--EEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-eeEeec-EEEeeCcEEEE
Q 005677 212 VEP---NQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSG-VEILSGGIIRL 284 (683)
Q Consensus 212 V~e---G~~~~--~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~-~~~~~~g~v~l 284 (683)
..| |++++ +|.|+|+..+++++|++.+..++|++|+.+.|++++++|+++|+++|| +++|.. .+.+.++.|+|
T Consensus 50 ~~e~~~g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~i 129 (554)
T 2qdz_A 50 KPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKL 129 (554)
T ss_dssp ---CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEEE
T ss_pred CccccCCceEEEEEEEEECCccCCHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCCEEEE
Confidence 468 99875 999999999998999899999999999999999999999999999999 788764 44556789999
Q ss_pred EEEEEEEeeEEEEEcccCCCCCCCCCCCHHHHHH---HcccCCCCCCChHhHHHHHHHHHhCCCccceeeeeecCCCCCe
Q 005677 285 QVAEAEVNNISIRFLDRKTGEPTKGKTRPETILR---QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGK 361 (683)
Q Consensus 285 ~V~e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r---~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~ 361 (683)
.|.|++|++|.|. |+ .++++.+|++ .+++++|++|+.++|++++++|++++ ..|.+++.|+..++.
T Consensus 130 ~v~eG~i~~I~i~------G~---~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~~--~~v~~~~~p~~~~g~ 198 (554)
T 2qdz_A 130 KVEWGRIKGWLID------GK---PLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGG--KTGNITIVPADEYGY 198 (554)
T ss_dssp EEECCEEEEEEET------TE---ECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSS--EEEEEEEEECSSTTE
T ss_pred EEEeEEEEEEEEC------CC---CccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcCc--hhceEEEecCCCCCe
Confidence 9999999999998 98 7889999999 99999999999999999999999999 778888888767899
Q ss_pred EEEEEEEEEcCCeeEEEeeeecC--CCCCCCCcccEEEEEEEEccCCcCCcEEEEEEEecc-------eeeEEEEEEEcc
Q 005677 362 VDLIMNVVERPSGGFSAGGGISS--GITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ-------IDSIFRINYTDP 432 (683)
Q Consensus 362 v~l~i~V~E~~~~~~~~g~gy~s--~~~~~~~~G~~~~~~l~~~NlfG~g~~l~~~~~~~~-------~~~~~~l~y~~P 432 (683)
++|+|+|+|+++..+.++++... ... ..++.+.+.+.++|++|.|+++++++..+. ..+.+.++|+.|
T Consensus 199 ~~l~v~v~e~~~~~~~~g~~~~g~g~~~---tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P 275 (554)
T 2qdz_A 199 SYLDLQLQRRALPRVSLGMDNSGPGTPE---NGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVP 275 (554)
T ss_dssp EEEEEEEEECCSCEEEEEEEECSCSSSC---SSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEE
T ss_pred eEEEEEEeeCCcEEEEEEEcCCCCCCCC---ccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEE
Confidence 99999999988866655554422 110 234789999999999999999999999985 678999999999
Q ss_pred ccCCCCCceEEEEEEEeeecCCcccCCCCCCCCceEEEEEEEEEEEEeec--CCCeEEEEEEEEEEEEeecCCCC--c--
Q 005677 433 WIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPI--RPKWSGTVGLIFQHSGARDEKGN--P-- 506 (683)
Q Consensus 433 ~~~~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~gl~~~~~~~~~~~~~--~-- 506 (683)
|.. +.+.+++.+++....+ .+. .....|...+.++++.+++|+ ...+++++++++.+.+..+.... .
T Consensus 276 ~~~-----~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (554)
T 2qdz_A 276 LGR-----TRLDLQTGYSTYRNLL-KTR-YGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDV 348 (554)
T ss_dssp ETT-----EEEEEEEEEEEEECCC-SSS-SCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSCCC
T ss_pred Eec-----CeEEEEEEEeEEEEEc-cCC-cceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcCccc
Confidence 873 2444444434322211 110 122356777888899999998 44666666666666554321111 0
Q ss_pred eeccccCCceeeccccCCc--eeEEEeeEEEccCCCCCCceeEEeeeeccCcCCCcceEEEEEEEEEEEEEe---cCc-e
Q 005677 507 IIKDFYSSPLTASGKTNDE--MLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEI---GPA-R 580 (683)
Q Consensus 507 ~~~~~~~~~l~~~~d~rD~--~~~P~~G~~~~~~G~~G~~~~~~~~e~~~~~~~~~~~f~k~~~~~~~y~~l---~~~-~ 580 (683)
.......+.++++|++++. .++++.+... | .. +............++..|.|+.+++++|+++ ... .
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---G---~~-~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~ 421 (554)
T 2qdz_A 349 SSKHYSDVTVGMQYSTQRGANAYFGDLSFTR---G---VG-VNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQ 421 (554)
T ss_dssp EEEEEEEEEEEEEEEEECSSEEEEEEEEEEE---C---CC-C--------------CCCEEEEEEEEEEEEEEETTEEEE
T ss_pred cCceEEEEEEEEEEEEEecCeEEEEEEEEEe---c---CC-CCCCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEE
Confidence 1112334556777887765 5556544332 1 10 0100000000112467999999999999997 333 5
Q ss_pred EEEEEeeeeeccCCCccCccccCCCCccccccCCCccccceEEEEeEEEEEeccc------CCce------eEEEecCCC
Q 005677 581 LLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMVC------DDYQ------ISVLYGSKS 648 (683)
Q Consensus 581 l~lr~~~G~~~g~lP~~erF~lGG~~svRGy~~~~lgpG~~~~~~s~ElR~pl~~------~~~g------~g~~~g~~~ 648 (683)
+.+++.+|++.+++|++|+|++||.++||||++++++||+.++.+++|||||+.. ..+. +|.+|+...
T Consensus 422 ~~~~~~~q~~~~~lp~~e~f~lGG~~sVRGy~~~~l~pGd~g~~~~~El~~~~~~~~~~~~~~~~~~~F~D~G~v~~~~~ 501 (554)
T 2qdz_A 422 WASQLGFQYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHP 501 (554)
T ss_dssp EEEEEEEEECSSCSSSSEECCSCCCCCCTTCCCCCSCCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECSSS
T ss_pred EEEEEEeEecCCCCCcHHhEecCCCCeECCcccccccCCCccEEEEEEEEeeccccccCccceEEEEEEEEEEEEecCCC
Confidence 7777888888778999999999999999999999998899999999999999711 1222 677776543
Q ss_pred Ccc--cccccccceeeecccccccccccc
Q 005677 649 ENI--LKLYHCMFMMLKSACNCASHELAE 675 (683)
Q Consensus 649 ~~~--~k~~~~~~~~~~~~~~~~~~~~~~ 675 (683)
+.. .....+++++|.++...+++|+|-
T Consensus 502 ~~~~~~~~g~G~Glr~~~~~~~l~l~~a~ 530 (554)
T 2qdz_A 502 DARTIRMAGLAAGVRFDLPYARMSFTYSK 530 (554)
T ss_dssp SCCEEEEEEEEEEEEECCSSEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEecCcEEEEEEEEe
Confidence 311 222355667776655555555553
No 2
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.95 E-value=2.7e-28 Score=257.45 Aligned_cols=235 Identities=34% Similarity=0.589 Sum_probs=133.7
Q ss_pred ccCccccceEEEEEEEeCCC----CccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCCCceEeEEEE-eCCC
Q 005677 130 SRSDEERVLISEVLVRNKDG----EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAV-DTRD 204 (683)
Q Consensus 130 ~i~~~~~~~I~~V~~~G~~N----~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~V~~~~-~~~~ 204 (683)
..++|++++|++|.|.| | ..++++.|++ .| .+++|+.|+...+++|+++|++.|||. .|.+.. +.++
T Consensus 55 ~~~Eg~~~~I~~I~i~G--n~~~~~~~~~~~l~~----~l-~~k~G~~~~~~~l~~di~~L~~~GyF~-~V~v~~~~~~~ 126 (316)
T 3mc9_A 55 PETTEPRVLVSEVLVRP--QSGQLTPELETQVYN----VI-RTQPGRTTTRSQLQEDINAIFGTGFFS-NVQASPEDTPL 126 (316)
T ss_dssp ---CCCCEEEEEEEEEE--SSSCCCHHHHHHHHH----HC-CCCTTSEECHHHHHHHHHHHHHTSCEE-EEEEEEEEETT
T ss_pred CCCCCCceEEEEEEEEC--CcccccccCHHHHHh----hc-cCCCCCccCHHHHHHHHHHHHHCCCce-EEEEEEecCCC
Confidence 67899999999999999 8 6666666665 44 589999999999999999999999995 454443 3457
Q ss_pred cEEEEEEEeeCCceEEEEEecc------cCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-eeEeec-EEE
Q 005677 205 GIRLVFQVEPNQEFHGLVCEGA------NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSG-VEI 276 (683)
Q Consensus 205 ~v~v~~~V~eG~~~~~I~~~G~------~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~-~~~ 276 (683)
++.|+|.|+||+.+++|.|.|+ ..++.+.|++.+.++.|++|+...|++++++|+++|+++|| +++|.. .++
T Consensus 127 ~v~l~~~V~egp~I~~I~~~Gn~~~~~~~~~~~~~L~~~l~l~~G~~~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~~~ 206 (316)
T 3mc9_A 127 GVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQV 206 (316)
T ss_dssp EEEEEEEEEECCBCCEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEE
T ss_pred eEEEEEEEecCceEEEEEEeccccccccccCCHHHHHHHhcccCCCeeCHHHHHHHHHHHHHHHHHCCCeeEEeeeccEE
Confidence 8999999999999999999999 78888999999999999999999999999999999999999 899874 455
Q ss_pred eeCcEEEEEEEEEEEeeEEEEEcccC------CCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCcccee
Q 005677 277 LSGGIIRLQVAEAEVNNISIRFLDRK------TGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVS 350 (683)
Q Consensus 277 ~~~g~v~l~V~e~~I~~I~I~~~~~~------~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~ 350 (683)
..++.|+|.|+||+|++|.|...+-. .|++...++++.+|++++.+++|++|+..+|++++++|+++|+|+.|.
T Consensus 207 ~~~g~l~i~V~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~vI~r~l~~~~G~~yn~~~l~~~~~~L~~lg~F~~V~ 286 (316)
T 3mc9_A 207 SENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDVN 286 (316)
T ss_dssp CTTSEEEEEEECCEEC----------------------------------------------------------------
T ss_pred CCCCEEEEEEEcCccccEEEEEEeccccccccCCcccccccCHHHHHhhhccCCCCcCCHHHHHHHHHHHHcCCCcceee
Confidence 56788999999998877766521100 033111378999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEEEEEcC
Q 005677 351 IIPQPAGDTGKVDLIMNVVERP 372 (683)
Q Consensus 351 i~~~~~~~~g~v~l~i~V~E~~ 372 (683)
+.+.+...+++++|.|+|+|+.
T Consensus 287 v~~~p~~~~~~vdl~v~v~e~~ 308 (316)
T 3mc9_A 287 VSLDPGTDPTKVNVVVNVVERS 308 (316)
T ss_dssp ----------------------
T ss_pred EEeecCCCCCeEEEEEEEEEcc
Confidence 9998877789999999999975
No 3
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.95 E-value=6.7e-27 Score=236.44 Aligned_cols=231 Identities=32% Similarity=0.530 Sum_probs=193.3
Q ss_pred cccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCCC-ceEeEEEEeCCCcEEEEEEE
Q 005677 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYF-CSCMPVAVDTRDGIRLVFQV 212 (683)
Q Consensus 134 ~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf-~a~V~~~~~~~~~v~v~~~V 212 (683)
++++.|++|.|+| |+.+..+.|+. .+ .+++|+.|++..+++|+++|++.||| ++.|.... .++++.|+|.|
T Consensus 2 ~~~~~I~~I~i~G--~~~~~~~~i~~----~l-~~~~g~~~~~~~~~~~~~~L~~~Gyf~~~~v~~~~-~~~~~~l~~~v 73 (235)
T 2x8x_X 2 EPKVLIAEVVVEG--ATPELEQLVYQ----VI-STRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRD-TPLGVRITFVV 73 (235)
T ss_dssp CCCEEEEEEEEES--CCHHHHHHHHH----HC-CCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEE-ETTEEEEEEEE
T ss_pred CCccEEEEEEEEC--CCccCHHHHHH----hh-ccCCCCccCHHHHHHHHHHHHHCCCcEEEEEEEec-CCCcEEEEEEE
Confidence 6789999999999 77655555543 44 58999999999999999999999996 66665444 35678999999
Q ss_pred eeCCceEEEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-eeEeecE-EEeeCcEEEEEEEEEE
Q 005677 213 EPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EILSGGIIRLQVAEAE 290 (683)
Q Consensus 213 ~eG~~~~~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~-~~~~~g~v~l~V~e~~ 290 (683)
+|||.+.+|.|.|+..++.+.|.+.+.+++|++|+...+++++++|.++|+++|| +++|... +...++.|++.|.++.
T Consensus 74 ~eg~~i~~i~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~l~~~v~eG~ 153 (235)
T 2x8x_X 74 RPYPVLRAVQVAGNQVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGV 153 (235)
T ss_dssp EECCBCCEEEEESCSSSCHHHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTSEEEEEEECCB
T ss_pred EecceEEEEEEECCccCCHHHHHHHhCccCCCCcCHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCCcEEEEEEEeCc
Confidence 9999888999999999999999999999999999999999999999999999999 7888754 4445678999999876
Q ss_pred EeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCccceeeeeecCCCCCeEEEEEEEEE
Q 005677 291 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVE 370 (683)
Q Consensus 291 I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~v~l~i~V~E 370 (683)
+.+|.|.... -.|+....++++.+|++.+.+++|++|+..++++++++|+++|+|+.|.+.+.|+..++.++|.|.|+|
T Consensus 154 ~~~i~i~~i~-~~G~~~~~~~~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~~g~f~~v~i~~~~~~~~~~~~l~i~v~e 232 (235)
T 2x8x_X 154 VEQVTYRFLN-KEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQNPRRVNLILNIKE 232 (235)
T ss_dssp EEEEEEEEBC-TTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHHHHTCEEEEEEEEEECSSTTSEEEEEEEEE
T ss_pred eEEEEEEEec-ccCCcCCCccchhheeeeeecCCCCccCHHHHHHHHHHHHhcCCcccceEEeccCCCCCeeEEEEEEEe
Confidence 5555442100 017611128999999999999999999999999999999999999999998888656889999999999
Q ss_pred cCC
Q 005677 371 RPS 373 (683)
Q Consensus 371 ~~~ 373 (683)
+++
T Consensus 233 ~~t 235 (235)
T 2x8x_X 233 RNT 235 (235)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 4
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.93 E-value=5e-25 Score=235.08 Aligned_cols=233 Identities=13% Similarity=0.198 Sum_probs=195.9
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCCCceEeEEEEe--CC
Q 005677 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVD--TR 203 (683)
Q Consensus 130 ~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~~~~~--~~ 203 (683)
.+.+.|.|.|++|.|.| |+.+++++|++.+. ...+++|..|++..++++.++|. ++|||+|.|...+. .+
T Consensus 69 ~~~V~e~p~I~~i~~~G--n~~~~~~~l~~~l~--~~~l~~g~~~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~~ 144 (335)
T 2qdf_A 69 LVQVKERPTIASITFSG--NKSVKDDMLKQNLE--ASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR 144 (335)
T ss_dssp EEEEEECCEEEEEEEES--CCSSCHHHHHHHHH--TTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETT
T ss_pred EEEEEeccEEEEEEEEC--CccCCHHHHHHHHH--hcCCCCCcccCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCC
Confidence 55666777899999999 99999999998552 22356899999999999999996 69999999976552 56
Q ss_pred CcEEEEEEEeeCCceE--EEEEecccCCChhHHHHhhccCCC---------ccccHHHHHHHHHHHHHHHHHCCc-eeEe
Q 005677 204 DGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FGMV 271 (683)
Q Consensus 204 ~~v~v~~~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~G---------~~~~~~~l~~~~~~I~~~y~~~GY-~a~V 271 (683)
+.+.|+|.|+||++++ +|.|.|+..++++.|++.+.++.| ++|+...|++++++|.++|+++|| .++|
T Consensus 145 ~~~~v~~~i~eG~~~~i~~I~~~G~~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~~~v 224 (335)
T 2qdf_A 145 NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 224 (335)
T ss_dssp TEEEEEEEEECCCBCEEEEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCEE
T ss_pred CeEEEEEEEecCCEEEEEEEEEECCccCCHHHHHHHhccCCCccccccccCCeeCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 7899999999999965 999999999999999998888886 999999999999999999999999 6888
Q ss_pred ecEE-Eee--Cc--EEEEEEEEE---EEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHh-
Q 005677 272 SGVE-ILS--GG--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT- 342 (683)
Q Consensus 272 ~~~~-~~~--~g--~v~l~V~e~---~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~- 342 (683)
.... ..+ ++ .|++.|.|+ +|++|.|. |+ ..+++.+|++.+.+++|++|+..++++++++|.+
T Consensus 225 ~~~~~~~~~~~~~v~v~i~v~eG~~~~i~~I~i~------g~---~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~l~~~ 295 (335)
T 2qdf_A 225 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVS------GN---LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKL 295 (335)
T ss_dssp EEEEEEECTTSSEEEEEEEEECCCCCEEEEEEEE------EE---CTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHH
T ss_pred cCCEEEEcCCCCEEEEEEEEccCCcEEEEEEEEE------cc---ccCChHHHHHhcCCCCCCccCHHHHHHHHHHHHHH
Confidence 6533 332 33 477888876 89999999 98 7899999999999999999999999999999885
Q ss_pred ---CCC-ccceeeeeecCCCCCeEEEEEEEEEcCCee
Q 005677 343 ---MGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSGG 375 (683)
Q Consensus 343 ---lg~-F~~V~i~~~~~~~~g~v~l~i~V~E~~~~~ 375 (683)
+|| |.+|.+.+.++..+++++|.+.|+|+++..
T Consensus 296 ~~~~Gy~f~~v~~~~~~~~~~~~vdv~i~v~e~~~~~ 332 (335)
T 2qdf_A 296 LGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFY 332 (335)
T ss_dssp HHTTTBSSCEEEEEEEEETTTTEEEEEEEEECCCBCC
T ss_pred HHhCCCCceEEEEeeEecCCCCEEEEEEEEeeCCeEE
Confidence 597 888888887766788999999999998754
No 5
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.92 E-value=2.7e-24 Score=234.62 Aligned_cols=232 Identities=13% Similarity=0.199 Sum_probs=198.0
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHH----HHcCCCceEeEEEEe--CC
Q 005677 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD--TR 203 (683)
Q Consensus 130 ~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~V~~~~~--~~ 203 (683)
.+.+.|+|.|++|.|+| |+.+++++|++.+. .+ .+++|..|++..+++++++| .++|||+|.|...+. .+
T Consensus 68 ~~~v~e~p~I~~I~~~G--n~~~~~~~l~~~l~-~~-~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~ 143 (395)
T 3efc_A 68 LVQVKERPTIASITFSG--NKSVKDDMLKQNLE-AS-GVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR 143 (395)
T ss_dssp EEEEEECCEEEEEEEES--CTTSCHHHHHHHHH-HH-TCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTT
T ss_pred EEEEEEccEEEEEEEEC--CccCCHHHHHHHHH-hc-CCCCCCccCHHHHHHHHHHHHHHHHHcCccceEEEEEEEECCC
Confidence 67888899999999999 99999999997542 22 58999999999999999998 479999999987653 35
Q ss_pred CcEEEEEEEeeCCceE--EEEEecccCCChhHHHHhhccCCC---------ccccHHHHHHHHHHHHHHHHHCCc-eeEe
Q 005677 204 DGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FGMV 271 (683)
Q Consensus 204 ~~v~v~~~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~G---------~~~~~~~l~~~~~~I~~~y~~~GY-~a~V 271 (683)
+++.|+|+|+||++++ +|.|+||..+++++|.+.+.+++| ++|+.+.+++++++|.++|+++|| .++|
T Consensus 144 ~~v~l~~~V~eG~~~~I~~I~~~Gn~~~~~~~L~~~~~~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a~v 223 (395)
T 3efc_A 144 NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 223 (395)
T ss_dssp SEEEEEEEEECCCCCCCCCCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred CEEEEEEEEecCCeEEEEEEEEECCcccCHHHHHHHHhCCCCccchhhccCCccCHHHHHhHHHHHHHHHHhCCCceEEE
Confidence 6799999999999854 999999999999999999999999 999999999999999999999999 5888
Q ss_pred ecEEE--eeC-c--EEEEEEEEE---EEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHH----HH
Q 005677 272 SGVEI--LSG-G--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDV----ET 339 (683)
Q Consensus 272 ~~~~~--~~~-g--~v~l~V~e~---~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~----~~ 339 (683)
....+ ..+ + .|++.|.|| +|++|.|. |+ ..+++..|++.+.+++|++|+..+++++. +.
T Consensus 224 ~~~~~~~~~~~~~v~v~i~V~eG~~y~i~~I~i~------Gn---~~~~~~~l~~~~~l~~G~~y~~~~l~~~~~~l~~~ 294 (395)
T 3efc_A 224 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVS------GN---LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKL 294 (395)
T ss_dssp EECCCEECTTSCSEECEEEEECCCCCEEEEECCB------SC---CTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHH
T ss_pred eccEEEECCCCcEEEEEEEEecCCCEEEEEEEEE------CC---CCCCHHHHHHHhccCCCCCcCHHHHHHHHHHHHHH
Confidence 75432 222 2 478888864 89999999 98 78899999999999999999999999984 45
Q ss_pred HHhCCC-ccceeeeeecCCCCCeEEEEEEEEEcCCe
Q 005677 340 VLTMGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSG 374 (683)
Q Consensus 340 L~~lg~-F~~V~i~~~~~~~~g~v~l~i~V~E~~~~ 374 (683)
+.+.|| |..|.+.+.+...+++++|.+.|.|++..
T Consensus 295 ~~~~GY~~~~v~~~~~~~~~~~~v~l~~~v~eG~~~ 330 (395)
T 3efc_A 295 LGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRF 330 (395)
T ss_dssp HHHTTCSSCEEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred HHhCCCCccEEEEeeEecCCCCEEEEEEEEEeCCeE
Confidence 567899 45666555555568899999999998764
No 6
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.91 E-value=8.6e-25 Score=238.58 Aligned_cols=211 Identities=14% Similarity=0.224 Sum_probs=133.8
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCC---------CccCHHHHHHHHHHHH----HcCCCceEe
Q 005677 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRAN---------SALTVREVQEDVHRII----DSGYFCSCM 196 (683)
Q Consensus 130 ~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g---------~~~~~~~l~~d~~~L~----~~GYf~a~V 196 (683)
.|++|++++|.+|.|.| |+.+++++|++ .+ .+++| +.|++..+++|+++|. ++|||++.|
T Consensus 151 ~V~eG~~~~I~~I~~~G--n~~~~~~~L~~----~~-~~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a~v 223 (395)
T 3efc_A 151 VFQEGVSAEIQQINIVG--NHAFTTDELIS----HF-QLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 223 (395)
T ss_dssp EEECCCCCCCCCCEEES--CCSSCTTTTGG----GC-CCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred EEecCCeEEEEEEEEEC--CcccCHHHHHH----HH-hCCCCccchhhccCCccCHHHHHhHHHHHHHHHHhCCCceEEE
Confidence 78899999999999999 99999999986 34 47888 9999999999999985 899999999
Q ss_pred EEE---Ee-CCCcEEEEEEEeeCCceE--EEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-ee
Q 005677 197 PVA---VD-TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FG 269 (683)
Q Consensus 197 ~~~---~~-~~~~v~v~~~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a 269 (683)
... +. +++.+.|+|+|+||++|+ +|.|.|+..++++.|++.+.+++|++|+...|++++++|.++|.++|| ++
T Consensus 224 ~~~~~~~~~~~~~v~v~i~V~eG~~y~i~~I~i~Gn~~~~~~~l~~~~~l~~G~~y~~~~l~~~~~~l~~~~~~~GY~~~ 303 (395)
T 3efc_A 224 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 303 (395)
T ss_dssp EECCCEECTTSCSEECEEEEECCCCCEEEEECCBSCCTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred eccEEEECCCCcEEEEEEEEecCCCEEEEEEEEECCCCCCHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 643 22 456899999999999976 999999999899999999999999999999999999999999999999 78
Q ss_pred EeecEEEe--eCcE--EEEEEEEE---EEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHh
Q 005677 270 MVSGVEIL--SGGI--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342 (683)
Q Consensus 270 ~V~~~~~~--~~g~--v~l~V~e~---~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~ 342 (683)
+|.+.... .++. |++.|.|+ +|++|.|. |+ .++++.+|++++.+++|++|+..+++++.++|.+
T Consensus 304 ~v~~~~~~~~~~~~v~l~~~v~eG~~~~i~~I~i~------Gn---~~~~~~virr~~~~~~G~~y~~~~l~~~~~~L~~ 374 (395)
T 3efc_A 304 RVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNR 374 (395)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECCCCCCC---------------------------------------------------
T ss_pred EEEEeeEecCCCCEEEEEEEEEeCCeEEEEEEEEE------CC---CcCChHHHhhhcccCCCccCCHHHHHHHHHHHHh
Confidence 88854333 2355 66777764 79999999 99 7999999999999999999999999999999999
Q ss_pred CCCccceeeeeecC
Q 005677 343 MGIMEDVSIIPQPA 356 (683)
Q Consensus 343 lg~F~~V~i~~~~~ 356 (683)
+|+|+.|++++.+.
T Consensus 375 lg~F~~V~i~~~~~ 388 (395)
T 3efc_A 375 LGFFETVDTDTQRV 388 (395)
T ss_dssp --------------
T ss_pred CCCcceeeeeccCC
Confidence 99999999987653
No 7
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.83 E-value=2.9e-19 Score=190.36 Aligned_cols=220 Identities=14% Similarity=0.260 Sum_probs=177.6
Q ss_pred ccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCCCceEeEEEEeCCCcEEEEEEEee
Q 005677 135 ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEP 214 (683)
Q Consensus 135 ~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~V~~~~~~~~~v~v~~~V~e 214 (683)
+.+.|.+|.|+| ++.++.+.|++ .+ .+++|+.+++..+++++++|++.|||+. |.+..+ +..|+|+|+|
T Consensus 6 ~~~~i~~i~v~G--~~~~~~~~i~~----~l-~~~~g~~~~~~~i~~~i~~L~~~g~f~~-v~v~~~---~~~l~~~V~e 74 (335)
T 2qdf_A 6 EGFVVKDIHFEG--LQRVAVGAALL----SM-PVRTGDTVNDEDISNTIRALFATGNFED-VRVLRD---GDTLLVQVKE 74 (335)
T ss_dssp CCEECCEEEEES--CSSSCHHHHHH----TS-SCCTTCEECHHHHHHHHHHHHTTSCEEE-EEEEEE---TTEEEEEEEE
T ss_pred CCceEeEEEEEC--CEEcCHHHHHH----hc-CCCCCCccCHHHHHHHHHHHHhCCCcce-EEEEeC---CCEEEEEEEe
Confidence 458899999999 89899888886 34 5899999999999999999999999975 444322 3579999999
Q ss_pred CCceEEEEEecccCCChhHHHHhhccC---CCccccHHHHHHHHHHHHHHHHHCCc-eeEeecEEEe-eCc--EEEEEEE
Q 005677 215 NQEFHGLVCEGANVLPTKFVEDAFRDG---YGKVVNIRRLDEVITSINGWYMERGL-FGMVSGVEIL-SGG--IIRLQVA 287 (683)
Q Consensus 215 G~~~~~I~~~G~~~~~~~~L~~~~~~~---~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~~~~-~~g--~v~l~V~ 287 (683)
||++++|.|+|+..+++++|++.+..+ .|++|+...+++++++|+++|+++|| .|+|...... +++ .|++.|+
T Consensus 75 ~p~I~~i~~~Gn~~~~~~~l~~~l~~~~l~~g~~~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~~~i~ 154 (335)
T 2qdf_A 75 RPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQ 154 (335)
T ss_dssp CCEEEEEEEESCCSSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEE
T ss_pred ccEEEEEEEECCccCCHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCeEEEEEEEe
Confidence 999999999999999999999888544 89999999999999999999999999 5888865443 445 4788888
Q ss_pred EE---EEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCC---------CCCChHhHHHHHHHHH----hCCCccceee
Q 005677 288 EA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKG---------QVYSMLQGKRDVETVL----TMGIMEDVSI 351 (683)
Q Consensus 288 e~---~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G---------~~~~~~~l~~~~~~L~----~lg~F~~V~i 351 (683)
|+ +|++|.|. |+ ....+..|++.+.+++| ++|+..+++++.++|. +.||+. +.+
T Consensus 155 eG~~~~i~~I~~~------G~---~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~-~~v 224 (335)
T 2qdf_A 155 EGVSAEIQQINIV------GN---HAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYAR-FNI 224 (335)
T ss_dssp CCCBCEEEEEEEE------SC---CSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTT-CEE
T ss_pred cCCEEEEEEEEEE------CC---ccCCHHHHHHHhccCCCccccccccCCeeCHHHHHHHHHHHHHHHHHCCCeE-EEE
Confidence 65 69999999 99 78899999999988887 9999999998877665 458864 333
Q ss_pred ---eeecCCCCCeEEEEEEEEEcCCee
Q 005677 352 ---IPQPAGDTGKVDLIMNVVERPSGG 375 (683)
Q Consensus 352 ---~~~~~~~~g~v~l~i~V~E~~~~~ 375 (683)
.+....+++.++|.+.|.|++...
T Consensus 225 ~~~~~~~~~~~~~v~v~i~v~eG~~~~ 251 (335)
T 2qdf_A 225 DSTQVSLTPDKKGIYVTVNITEGDQYK 251 (335)
T ss_dssp EEEEEEECTTSSEEEEEEEEECCCCCE
T ss_pred cCCEEEEcCCCCEEEEEEEEccCCcEE
Confidence 233334567899999999998743
No 8
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.81 E-value=3e-19 Score=174.44 Aligned_cols=151 Identities=18% Similarity=0.244 Sum_probs=129.6
Q ss_pred EEeeCCceE--EEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCc-eeEeecE-EE-eeCc--EEE
Q 005677 211 QVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EI-LSGG--IIR 283 (683)
Q Consensus 211 ~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~-~~-~~~g--~v~ 283 (683)
..+||++|+ +|.|.|+..++.++|++.+.+++|++|+...+++++++|.++|+++|| +++|... +. ..++ .|+
T Consensus 28 ~~~~~~~y~i~~I~i~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~~~~v~l~ 107 (189)
T 3q6b_A 28 GGQQMGRYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLR 107 (189)
T ss_dssp -------CEEEEEEEEEECTTCHHHHHHHTCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEEEEEEEECCCcCCHHHHHHhhCCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCCCCEEEEE
Confidence 357888876 999999999999999999999999999999999999999999999999 7888763 22 2345 467
Q ss_pred EEEEEE---EEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCccceeeeeecC-CCC
Q 005677 284 LQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDT 359 (683)
Q Consensus 284 l~V~e~---~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~-~~~ 359 (683)
+.|+++ +|++|.|. |+ .++++.+|++.+.+++|++|+..++++++++|+++|+|+.|++.+.+. ..+
T Consensus 108 ~~V~eG~~~~i~~I~i~------Gn---~~~~~~~i~r~l~~~~G~~~n~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~ 178 (189)
T 3q6b_A 108 VNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSP 178 (189)
T ss_dssp EEEECCCCCEEEEEEEE------SC---SSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHHHHSCCSEEEEEEEEETTEE
T ss_pred EEECCCCeEEEEEEEEE------CC---ccCCHHHHHhhccCCCCCccCHHHHHHHHHHHHhCCCceeeEEEeccCCCCC
Confidence 788876 79999999 99 899999999999999999999999999999999999999999998875 367
Q ss_pred CeEEEEEEEEE
Q 005677 360 GKVDLIMNVVE 370 (683)
Q Consensus 360 g~v~l~i~V~E 370 (683)
+.++|.|+|+|
T Consensus 179 ~~vdv~v~V~E 189 (189)
T 3q6b_A 179 DQVDVVYKVKE 189 (189)
T ss_dssp EEEEEEEEEEC
T ss_pred CEEEEEEEEEC
Confidence 89999999986
No 9
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.47 E-value=1.4e-12 Score=127.18 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=106.9
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCCCceEeEEE--Ee-C
Q 005677 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVA--VD-T 202 (683)
Q Consensus 130 ~i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~~~--~~-~ 202 (683)
..+++++++|.+|.|.| |..++++.|++ .+ .+++|.+|+...++++.++|. ++||+.+.|... ++ .
T Consensus 28 ~~~~~~~y~i~~I~i~G--~~~~~~~~L~~----~~-~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~ 100 (189)
T 3q6b_A 28 GGQQMGRYKLSGVEVSG--NLAGHSAEIEQ----LT-KIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDA 100 (189)
T ss_dssp -------CEEEEEEEEE--ECTTCHHHHHH----HT-CCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETT
T ss_pred CCCCCCCEEEEEEEEEC--CCcCCHHHHHH----hh-CCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCC
Confidence 45688999999999999 88888888776 23 589999999999999999884 799999999653 33 3
Q ss_pred CCcEEEEEEEeeCCceE--EEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCceeEee
Q 005677 203 RDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVS 272 (683)
Q Consensus 203 ~~~v~v~~~V~eG~~~~--~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~a~V~ 272 (683)
.+.+.|+|.|+||++++ +|.|.|+....++.|++.+.+++|++|+...+++.+++|. +.|||..|.
T Consensus 101 ~~~v~l~~~V~eG~~~~i~~I~i~Gn~~~~~~~i~r~l~~~~G~~~n~~~l~~~~~~L~----~lg~F~~V~ 168 (189)
T 3q6b_A 101 DKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLN----RLGFFETVD 168 (189)
T ss_dssp TTEEEEEEEEECCCCCEEEEEEEESCSSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHH----HHSCCSEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEEEECCccCCHHHHHhhccCCCCCccCHHHHHHHHHHHH----hCCCceeeE
Confidence 56789999999999865 9999999988889999999999999999999999888865 479964443
No 10
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=99.21 E-value=9.1e-10 Score=124.89 Aligned_cols=262 Identities=18% Similarity=0.118 Sum_probs=167.6
Q ss_pred cCc---cccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCCCceEeEEEEeC-
Q 005677 131 RSD---EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVDT- 202 (683)
Q Consensus 131 i~~---~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~~~~~~- 202 (683)
-+| +++++|++|+|+| |..+++++|++ .+ ..++|..|+...+++++++|. ++||..+.|.....+
T Consensus 50 ~~e~~~g~~~~i~~I~~~G--~~~~~~~~l~~----~~-~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~ 122 (554)
T 2qdz_A 50 KPDATSGHTVTVHAVDLDF--GVEGRLFDPAP----LV-QDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGV 122 (554)
T ss_dssp ---CBCCCSSSSCCEEEEC--CSSSCCCSCST----TS-TTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEE
T ss_pred CccccCCceEEEEEEEEEC--CccCCHHHHHH----Hh-HhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccc
Confidence 357 8899999999999 89899988876 23 368899999999999999984 899999988543321
Q ss_pred CCcEEEEEEEeeCCceEEEEEecccCCChhHHHH---hhccCCCccccHHHHHHHHHHHHHHHHHCCceeEeecEEE--e
Q 005677 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVED---AFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEI--L 277 (683)
Q Consensus 203 ~~~v~v~~~V~eG~~~~~I~~~G~~~~~~~~L~~---~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~a~V~~~~~--~ 277 (683)
.++ .|+|.|.||+ +.+|.+.|+...++..|+. .+.+++|++|+..+|++.+++|.+. + ..|..... .
T Consensus 123 ~~g-~l~i~v~eG~-i~~I~i~G~~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~----~--~~v~~~~~p~~ 194 (554)
T 2qdz_A 123 VDG-VLKLKVEWGR-IKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNG----G--KTGNITIVPAD 194 (554)
T ss_dssp ETT-EEEEEEECCE-EEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSS----S--EEEEEEEEECS
T ss_pred cCC-EEEEEEEeEE-EEEEEECCCCccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcC----c--hhceEEEecCC
Confidence 223 5899999996 8899999998878888888 8899999999999999998887764 3 33333222 2
Q ss_pred eCcE--EEEEEEEEEEeeEEEEEcccCCC--CCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCC-Cccceeee
Q 005677 278 SGGI--IRLQVAEAEVNNISIRFLDRKTG--EPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMG-IMEDVSII 352 (683)
Q Consensus 278 ~~g~--v~l~V~e~~I~~I~I~~~~~~~G--n~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg-~F~~V~i~ 352 (683)
.++. |.+.|.|.+--.+.+..+.. | . +.+ | +--.+.+.
T Consensus 195 ~~g~~~l~v~v~e~~~~~~~~g~~~~--g~g~---~~t--------------------------------g~~~~~~~~~ 237 (554)
T 2qdz_A 195 EYGYSYLDLQLQRRALPRVSLGMDNS--GPGT---PEN--------------------------------GRYKYNASVT 237 (554)
T ss_dssp STTEEEEEEEEEECCSCEEEEEEEEC--SCSS---SCS--------------------------------SCEEEEEEEE
T ss_pred CCCeeEEEEEEeeCCcEEEEEEEcCC--CCCC---CCc--------------------------------cceEEEEEEE
Confidence 2344 56666664323344442110 2 2 111 1 11122222
Q ss_pred ee-cCCCCCeEEEEEEEEE----cCCeeEEEeeeecCCCCCCCCcccEEEEEEEEcc--CCcCCcEEEEEEEecceeeEE
Q 005677 353 PQ-PAGDTGKVDLIMNVVE----RPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRN--VFGRNQKLNISLERGQIDSIF 425 (683)
Q Consensus 353 ~~-~~~~~g~v~l~i~V~E----~~~~~~~~g~gy~s~~~~~~~~G~~~~~~l~~~N--lfG~g~~l~~~~~~~~~~~~~ 425 (683)
.. +-...+.+.+.+.+.+ .+.....++++|..... ..++.+.+.+.+.| +.+.+..+ .+......+
T Consensus 238 ~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~ 310 (554)
T 2qdz_A 238 ANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLG---RTRLDLQTGYSTYRNLLKTRYGQY----QSAGNSRSF 310 (554)
T ss_dssp EECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEECCCSSSSCCC----CCEEEEEEE
T ss_pred eCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEe---cCeEEEEEEEeEEEEEccCCcceE----EEEeeEEEE
Confidence 22 1234567777777776 33345566666664211 13455556655544 54444222 223344678
Q ss_pred EEEEEccccCCCCCceEEEEEEEeee
Q 005677 426 RINYTDPWIEGDDKRTSRTIMVQNSR 451 (683)
Q Consensus 426 ~l~y~~P~~~~~~~~~s~~~~~~~~~ 451 (683)
.+.+..|+.......+++++.+.+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (554)
T 2qdz_A 311 GLKATRLLYRDTRSQFSVYGGLKLRQ 336 (554)
T ss_dssp EEEEEEEEECCSSEEEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCeEEEEEEEEEEEE
Confidence 88888898765454556666665544
No 11
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.17 E-value=3.7e-10 Score=113.25 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=112.2
Q ss_pred cCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCCCceEeEEEE-eCCCc
Q 005677 131 RSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV-DTRDG 205 (683)
Q Consensus 131 i~~~~~~~I~~V~~~G~~N~~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~V~~~~-~~~~~ 205 (683)
+.+.|.+.|.+|.|.| |..++++.|++. + ..++|..|+...++++.++|. ++||+.+.|.... ...++
T Consensus 71 ~~v~eg~~i~~i~~~G--~~~~~~~~l~~~----~-~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~ 143 (235)
T 2x8x_X 71 FVVRPYPVLRAVQVAG--NQVLTQEKVNEI----F-APQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDG 143 (235)
T ss_dssp EEEEECCBCCEEEEES--CSSSCHHHHHHH----H-GGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTS
T ss_pred EEEEecceEEEEEEEC--CccCCHHHHHHH----h-CccCCCCcCHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCCc
Confidence 3334444999999999 898998888863 2 478999999999999999884 8999999996543 22333
Q ss_pred EEEEEEEeeCC--ceE--EEEEeccc---CCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCceeEeecEEEe-
Q 005677 206 IRLVFQVEPNQ--EFH--GLVCEGAN---VLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEIL- 277 (683)
Q Consensus 206 v~v~~~V~eG~--~~~--~I~~~G~~---~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~a~V~~~~~~- 277 (683)
.|+|.|.||+ +|+ .|.+.|+. .+.+..|.+.+.+++|++|+...+++.+++|. +.|||..|......
T Consensus 144 -~l~~~v~eG~~~~i~i~~i~~~G~~~~~~~~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~----~~g~f~~v~i~~~~~ 218 (235)
T 2x8x_X 144 -VVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLF----ELGLFEDVQVALEPG 218 (235)
T ss_dssp -EEEEEEECCBEEEEEEEEBCTTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHH----HHTCEEEEEEEEEEC
T ss_pred -EEEEEEEeCceEEEEEEEecccCCcCCCccchhheeeeeecCCCCccCHHHHHHHHHHHH----hcCCcccceEEeccC
Confidence 8999999999 444 77788987 67777788889999999999999999998877 67997544322222
Q ss_pred -eCc--EEEEEEEEE
Q 005677 278 -SGG--IIRLQVAEA 289 (683)
Q Consensus 278 -~~g--~v~l~V~e~ 289 (683)
.++ .|.+.|.|+
T Consensus 219 ~~~~~~~l~i~v~e~ 233 (235)
T 2x8x_X 219 QNPRRVNLILNIKER 233 (235)
T ss_dssp SSTTSEEEEEEEEEC
T ss_pred CCCCeeEEEEEEEeC
Confidence 234 366666653
No 12
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=98.97 E-value=5.7e-09 Score=109.67 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=112.0
Q ss_pred EEeeCCceE--EEEEecc----cCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHCCceeEeecEEEeeC-c-EE
Q 005677 211 QVEPNQEFH--GLVCEGA----NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSG-G-II 282 (683)
Q Consensus 211 ~V~eG~~~~--~I~~~G~----~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~a~V~~~~~~~~-g-~v 282 (683)
..+||++++ +|.|+|+ ..++++.|.+.+.+++|+.|+.+.|+++.++|. +.|||+.|.......+ + .|
T Consensus 55 ~~~Eg~~~~I~~I~i~Gn~~~~~~~~~~~l~~~l~~k~G~~~~~~~l~~di~~L~----~~GyF~~V~v~~~~~~~~v~l 130 (316)
T 3mc9_A 55 PETTEPRVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQEDINAIF----GTGFFSNVQASPEDTPLGVRV 130 (316)
T ss_dssp ---CCCCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHHHHHHH----HTSCEEEEEEEEEEETTEEEE
T ss_pred CCCCCCceEEEEEEEECCcccccccCHHHHHhhccCCCCCccCHHHHHHHHHHHH----HCCCceEEEEEEecCCCeEEE
Confidence 358999876 9999999 777888899999999999999999998877665 4799876654332233 3 47
Q ss_pred EEEEEEE-EEeeEEEEEcccCCCCCCC---CCCCHHHHHHHcccCCCCCCChHhHHHHHHHHH----hCCC-ccceeeee
Q 005677 283 RLQVAEA-EVNNISIRFLDRKTGEPTK---GKTRPETILRQLTTKKGQVYSMLQGKRDVETVL----TMGI-MEDVSIIP 353 (683)
Q Consensus 283 ~l~V~e~-~I~~I~I~~~~~~~Gn~~~---~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~----~lg~-F~~V~i~~ 353 (683)
++.|.++ +|++|.|. |++.. ....+..|++.+.+++|++|+...+++...+|. +.|| |..|.+.+
T Consensus 131 ~~~V~egp~I~~I~~~------Gn~~~~~~~~~~~~~L~~~l~l~~G~~~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~ 204 (316)
T 3mc9_A 131 SFIVQPNPVLSKVEIQ------ANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAP 204 (316)
T ss_dssp EEEEEECCBCCEEEEE------CCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSC
T ss_pred EEEEecCceEEEEEEe------ccccccccccCCHHHHHHHhcccCCCeeCHHHHHHHHHHHHHHHHHCCCeeEEeeecc
Confidence 8888886 79999999 86210 256678899999999999999999998777665 4698 45565444
Q ss_pred ecCCCCCeEEEEEEEEEcCCeeEEE
Q 005677 354 QPAGDTGKVDLIMNVVERPSGGFSA 378 (683)
Q Consensus 354 ~~~~~~g~v~l~i~V~E~~~~~~~~ 378 (683)
+.. .++. |.|.|.|++...+.+
T Consensus 205 ~~~-~~g~--l~i~V~eG~i~~i~v 226 (316)
T 3mc9_A 205 QVS-ENGV--VTLQVAEGVVENISV 226 (316)
T ss_dssp EEC-TTSE--EEEEEECCEEC----
T ss_pred EEC-CCCE--EEEEEEcCccccEEE
Confidence 433 2343 788888884333333
No 13
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=69.17 E-value=14 Score=35.56 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=52.9
Q ss_pred EeeEEEEEcccCCCCCCCC-CCCHHHHHHHc-ccCCCCCCChHhHHHHHHHHH-hCCCccceeeeeecCCCCCeEEEEEE
Q 005677 291 VNNISIRFLDRKTGEPTKG-KTRPETILRQL-TTKKGQVYSMLQGKRDVETVL-TMGIMEDVSIIPQPAGDTGKVDLIMN 367 (683)
Q Consensus 291 I~~I~I~~~~~~~Gn~~~~-~t~~~vI~r~l-~~~~G~~~~~~~l~~~~~~L~-~lg~F~~V~i~~~~~~~~g~v~l~i~ 367 (683)
|.+|.|. |+ . .+.+..|+..+ .+..|..+=.-++.+..++|. .+.+.++|.+.-.- +++ |.|.
T Consensus 1 v~~V~V~------G~---~~~~s~~~I~~~~~~~~~~~~~~~vd~~~i~~~l~~~~P~V~~a~V~r~~---P~~--l~I~ 66 (220)
T 2vh1_A 1 MSKLVLT------GE---RHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQW---PDE--LKIH 66 (220)
T ss_dssp -CEEEEE------SC---CSSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEEET---TTE--EEEE
T ss_pred CcEEEEe------CC---CccCCHHHHHHHHhhccCCCCeEEECHHHHHHHHHhcCCCEEEEEEEEeC---CCc--eEEE
Confidence 4688999 99 6 58888888888 677766655556777778898 99999999987543 344 6888
Q ss_pred EEEcCC
Q 005677 368 VVERPS 373 (683)
Q Consensus 368 V~E~~~ 373 (683)
|+|+.+
T Consensus 67 V~Er~p 72 (220)
T 2vh1_A 67 LVEYVP 72 (220)
T ss_dssp EEECCE
T ss_pred EEEecc
Confidence 999986
No 14
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=62.69 E-value=16 Score=36.14 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=54.4
Q ss_pred EEEeeEEEEEcccCCCCCCCC-CCCHHHHHHHc-ccCCCCCCChHhHHHHHHHHHhCCCccceeeeeecCCCCCeEEEEE
Q 005677 289 AEVNNISIRFLDRKTGEPTKG-KTRPETILRQL-TTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIM 366 (683)
Q Consensus 289 ~~I~~I~I~~~~~~~Gn~~~~-~t~~~vI~r~l-~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~v~l~i 366 (683)
..|.+|.|. |+ . .+.+..|+..+ .+..|..+-.-++.+..++|.++.++++|.|.-.- +++ |.|
T Consensus 26 f~v~~I~V~------G~---~~~vs~~eI~~~~~~~~~g~~~~~vd~~~i~~~l~~~PwV~~a~V~r~~---P~~--L~I 91 (255)
T 2vh2_A 26 LPLSKLVVT------GE---RHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQW---PDE--LKI 91 (255)
T ss_dssp -CCCEEEEE------SC---CSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEEET---TTE--EEE
T ss_pred ceEeEEEEE------CC---CcccCHHHHHHHHhcccCCCccEEEcHHHHHHHHHcCCCeeEEEEEEEC---CCe--EEE
Confidence 468899999 98 6 47888888887 67775655555677777889999999999987653 344 578
Q ss_pred EEEEcCC
Q 005677 367 NVVERPS 373 (683)
Q Consensus 367 ~V~E~~~ 373 (683)
.|+|+.+
T Consensus 92 ~V~Er~P 98 (255)
T 2vh2_A 92 HLVEYVP 98 (255)
T ss_dssp EEEECCC
T ss_pred EEEEeee
Confidence 8999976
No 15
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=30.98 E-value=1.2e+02 Score=28.73 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=40.4
Q ss_pred EEEEEEEeCCCC-ccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH-HcCCCceEeEEEEeCCCcEEEEEEEeeCC
Q 005677 139 ISEVLVRNKDGE-ELERKDLETEALTALKACRANSALTVREVQEDVHRII-DSGYFCSCMPVAVDTRDGIRLVFQVEPNQ 216 (683)
Q Consensus 139 I~~V~~~G~~N~-~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~-~~GYf~a~V~~~~~~~~~v~v~~~V~eG~ 216 (683)
|++|.|.| |. .++.++|++.+ .....|..+-.-.+.+-.++|. ..-|-... .+...-++ .|.++|.|-.
T Consensus 1 v~~V~V~G--~~~~~s~~~I~~~~----~~~~~~~~~~~vd~~~i~~~l~~~~P~V~~a-~V~r~~P~--~l~I~V~Er~ 71 (220)
T 2vh1_A 1 MSKLVLTG--ERHYTRNDDIRQSI----LALGEPGTFMTQDVNIIQTQIEQRLPWIKQV-SVRKQWPD--ELKIHLVEYV 71 (220)
T ss_dssp -CEEEEES--CCSSCCHHHHHHHH----HTTSCTTCGGGSCHHHHHHHHHHHCTTEEEE-EEEEETTT--EEEEEEEECC
T ss_pred CcEEEEeC--CCccCCHHHHHHHH----hhccCCCCeEEECHHHHHHHHHhcCCCEEEE-EEEEeCCC--ceEEEEEEec
Confidence 57899999 87 69999999743 1234434322223333334555 55554321 22222233 5677889988
Q ss_pred ceE
Q 005677 217 EFH 219 (683)
Q Consensus 217 ~~~ 219 (683)
++-
T Consensus 72 pvA 74 (220)
T 2vh1_A 72 PIA 74 (220)
T ss_dssp EEE
T ss_pred cEE
Confidence 853
No 16
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=23.73 E-value=1.1e+02 Score=29.84 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=40.5
Q ss_pred ccccceEEEEEEEeCCCC-ccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCCCceEeEEEEeCCCcEEEEEE
Q 005677 133 DEERVLISEVLVRNKDGE-ELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQ 211 (683)
Q Consensus 133 ~~~~~~I~~V~~~G~~N~-~~~~~~L~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~V~~~~~~~~~v~v~~~ 211 (683)
..+...|++|.|+| |. .++.++|++.+ .....|..+-.-.+.+-.++|...-|-.. +.+...-++ .|.++
T Consensus 22 ~sp~f~v~~I~V~G--~~~~vs~~eI~~~~----~~~~~g~~~~~vd~~~i~~~l~~~PwV~~-a~V~r~~P~--~L~I~ 92 (255)
T 2vh2_A 22 ASSRLPLSKLVVTG--ERHYTTNDDIRQAI----LSLGAPGTFMTQDVNIIQQQIERLPWIQQ-ASVRKQWPD--ELKIH 92 (255)
T ss_dssp -----CCCEEEEES--CCSSCCHHHHHHHH----TTSCCSSTTTSCHHHHHHHHTSCCSSEEE-EEEEEETTT--EEEEE
T ss_pred cCCCceEeEEEEEC--CCcccCHHHHHHHH----hcccCCCccEEEcHHHHHHHHHcCCCeeE-EEEEEECCC--eEEEE
Confidence 44566789999999 77 58999999743 12344333322333333344434444322 122222233 56778
Q ss_pred EeeCCce
Q 005677 212 VEPNQEF 218 (683)
Q Consensus 212 V~eG~~~ 218 (683)
|.|-.++
T Consensus 93 V~Er~Pv 99 (255)
T 2vh2_A 93 LVEYVPF 99 (255)
T ss_dssp EEECCCC
T ss_pred EEEeeeE
Confidence 9999885
Done!