Query 005677
Match_columns 683
No_of_seqs 290 out of 2241
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 04:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005677.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005677hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqza1 d.224.1.3 (A:242-329) 48.4 3.9 0.00028 31.6 2.1 63 278-350 14-78 (88)
2 d1x2ga1 d.224.1.3 (A:247-337) 47.4 12 0.00085 28.9 4.9 55 278-342 14-70 (91)
3 d1x2ga1 d.224.1.3 (A:247-337) 32.1 28 0.002 26.6 4.9 56 203-260 15-70 (91)
4 d1t16a_ f.4.3.4 (A:) Long-chai 28.0 2.3E+02 0.016 26.3 17.3 29 469-497 364-392 (427)
5 d1qjpa_ f.4.1.1 (A:) Outer mem 18.4 2.2E+02 0.016 22.7 11.4 25 471-495 120-144 (171)
6 d1vqza1 d.224.1.3 (A:242-329) 13.5 55 0.004 24.5 2.9 54 203-258 15-68 (88)
7 d1t6sa1 a.4.5.60 (A:1-85) Segr 10.0 1.6E+02 0.012 21.4 4.7 42 227-272 21-65 (85)
8 d2fnaa1 a.4.5.11 (A:284-356) H 9.7 83 0.0061 22.8 2.6 36 313-348 21-56 (73)
9 d1p4ta_ f.4.1.1 (A:) Outer mem 7.9 4.6E+02 0.033 20.4 12.2 27 471-497 107-133 (155)
10 d3etja1 b.84.2.1 (A:277-355) N 7.3 45 0.0033 24.7 0.1 18 62-79 22-39 (79)
No 1
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=48.42 E-value=3.9 Score=31.60 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=43.5
Q ss_pred eCcE--EEEEEEEEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCcccee
Q 005677 278 SGGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVS 350 (683)
Q Consensus 278 ~~g~--v~l~V~e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~V~ 350 (683)
+.|. +.+.|..++|.+|.|. |. -..+..|...-..-.|..|+.+.+.+.+..+.-..||.++.
T Consensus 14 ~~G~vev~l~V~~G~I~~iki~------GD----ff~~~~i~~le~~L~G~~y~~~~i~~~L~~~~~~~Yf~~i~ 78 (88)
T d1vqza1 14 TSGKVEVFANVTESKIQDIKIY------GD----FFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGIS 78 (88)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE------ES----CCCSSCTHHHHHHHTTCBSSHHHHHHHHTTSCGGGTSTTCC
T ss_pred CCcEEEEEEEEeCCEEEEEEEE------ec----CCCchhHHHHHHHHcCCCCCHHHHHHHHHhCCHHHHhCCCC
Confidence 4465 5567778999999999 65 33333344333344689999999998887776566776554
No 2
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.35 E-value=12 Score=28.91 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=41.2
Q ss_pred eCcE--EEEEEEEEEEeeEEEEEcccCCCCCCCCCCCHHHHHHHcccCCCCCCChHhHHHHHHHHHh
Q 005677 278 SGGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342 (683)
Q Consensus 278 ~~g~--v~l~V~e~~I~~I~I~~~~~~~Gn~~~~~t~~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~ 342 (683)
+-|. |.+.|..|+|.++.|. |. -..+..|...-..-.|-+|+.+.+.+.+..+..
T Consensus 14 ~~G~ve~~l~V~~G~I~~~~i~------gD----fl~~~~i~~le~~L~G~~y~~~~i~~~l~~~~~ 70 (91)
T d1x2ga1 14 TWGGVELHFDVEKGHITRAQVF------TD----SLNPAPLEALAGRLQGCLYRADMLQQECEALLV 70 (91)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE------EC----CSCCHHHHHHHHHHTTCBSSHHHHHHHHHHTGG
T ss_pred CCceEEEEEEEeCCEEEEEEEE------cC----CCCcHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Confidence 4465 5677779999999999 75 555566665555456999999999988887754
No 3
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.09 E-value=28 Score=26.58 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=40.6
Q ss_pred CCcEEEEEEEeeCCceEEEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHHHH
Q 005677 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSING 260 (683)
Q Consensus 203 ~~~v~v~~~V~eG~~~~~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~ 260 (683)
-+.+.+.++|+.|. |+++.|-|+-. ....+..+-..-.|.+|+.+.+.+..+.+..
T Consensus 15 ~G~ve~~l~V~~G~-I~~~~i~gDfl-~~~~i~~le~~L~G~~y~~~~i~~~l~~~~~ 70 (91)
T d1x2ga1 15 WGGVELHFDVEKGH-ITRAQVFTDSL-NPAPLEALAGRLQGCLYRADMLQQECEALLV 70 (91)
T ss_dssp TEEEEEEEEEETTE-EEEEEEEECCS-CCHHHHHHHHHHTTCBSSHHHHHHHHHHTGG
T ss_pred CceEEEEEEEeCCE-EEEEEEEcCCC-CcHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Confidence 46788999988775 77889998754 3355555444446889999998888776653
No 4
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=28.00 E-value=2.3e+02 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=23.2
Q ss_pred EEEEEEEEEEEeecCCCeEEEEEEEEEEE
Q 005677 469 IGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (683)
Q Consensus 469 ~~~~~~~~~~~~~l~~~~~~~~gl~~~~~ 497 (683)
..++.+++++++++.+++++.+++.|...
T Consensus 364 ~~~~~~s~G~~~~~~~~~~id~a~~y~~~ 392 (427)
T d1t16a_ 364 QDRFWLSAGTTYAFNKDASVDVGVSYMHG 392 (427)
T ss_dssp CCEEEEEEEEEEESSSSEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEcCCCeEEEEEEEEEEc
Confidence 34667788899999999999888887654
No 5
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=18.44 E-value=2.2e+02 Score=22.72 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=19.3
Q ss_pred EEEEEEEEEeecCCCeEEEEEEEEE
Q 005677 471 RVTAGMEFSRPIRPKWSGTVGLIFQ 495 (683)
Q Consensus 471 ~~~~~~~~~~~l~~~~~~~~gl~~~ 495 (683)
.+.+++++.|.++++|.+.+++++.
T Consensus 120 ~~~~G~G~~y~i~~~~~l~~ey~~~ 144 (171)
T d1qjpa_ 120 SPVFAGGVEYAITPEIATRLEYQWT 144 (171)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEeEEEEEeCCCEEEEEEEEEE
Confidence 4457778889999999888877653
No 6
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=13.54 E-value=55 Score=24.54 Aligned_cols=54 Identities=9% Similarity=0.021 Sum_probs=37.2
Q ss_pred CCcEEEEEEEeeCCceEEEEEecccCCChhHHHHhhccCCCccccHHHHHHHHHHH
Q 005677 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSI 258 (683)
Q Consensus 203 ~~~v~v~~~V~eG~~~~~I~~~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I 258 (683)
.+.+.+.++|+.| .+++++|.|+-. ....+.+.-..-.|.+|+.+.|.+..+.+
T Consensus 15 ~G~vev~l~V~~G-~I~~iki~GDff-~~~~i~~le~~L~G~~y~~~~i~~~L~~~ 68 (88)
T d1vqza1 15 SGKVEVFANVTES-KIQDIKIYGDFF-GIEDVAAVEDVLRGVKYEREDVLKALKTI 68 (88)
T ss_dssp TEEEEEEEEEETT-EEEEEEEEESCC-CSSCTHHHHHHHTTCBSSHHHHHHHHTTS
T ss_pred CcEEEEEEEEeCC-EEEEEEEEecCC-CchhHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 4678899998555 588899998743 33334444444468899998888766554
No 7
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=10.01 E-value=1.6e+02 Score=21.38 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=30.1
Q ss_pred cCCChhHHHHhhccCCCccccHHHHHHHHHHHHHHHHH--CCc-eeEee
Q 005677 227 NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYME--RGL-FGMVS 272 (683)
Q Consensus 227 ~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~--~GY-~a~V~ 272 (683)
..++.++|.+.+. +.++...+.+..+.|.+.|.+ +|+ +.++.
T Consensus 21 ~Pls~~~L~~~l~----~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~ 65 (85)
T d1t6sa1 21 EPVNLQTLSQITA----HKFTPSELQEAVDELNRDYEATGRTFRIHAIA 65 (85)
T ss_dssp SCBCHHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCCCHHHHHHHHc----cCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3456666666543 456788899999999999965 677 66654
No 8
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=9.72 E-value=83 Score=22.80 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=31.9
Q ss_pred HHHHHHHcccCCCCCCChHhHHHHHHHHHhCCCccc
Q 005677 313 PETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMED 348 (683)
Q Consensus 313 ~~vI~r~l~~~~G~~~~~~~l~~~~~~L~~lg~F~~ 348 (683)
=+.|++.+..+.|...+-..|...+++|..+|+.+.
T Consensus 21 Ws~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek 56 (73)
T d2fnaa1 21 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK 56 (73)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCceee
Confidence 457899999999999999999999999999998753
No 9
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=7.88 E-value=4.6e+02 Score=20.36 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=21.7
Q ss_pred EEEEEEEEEeecCCCeEEEEEEEEEEE
Q 005677 471 RVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (683)
Q Consensus 471 ~~~~~~~~~~~l~~~~~~~~gl~~~~~ 497 (683)
.+.+++++.|.++++|.+.++++|...
T Consensus 107 ~~~~g~G~~y~lt~n~~~~~eyry~~~ 133 (155)
T d1p4ta_ 107 GLGVLTGVSYAVTPNVDLDAGYRYNYI 133 (155)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeEEEEEEEEEecCCEEEEEEEEEEEc
Confidence 456778889999999999888877544
No 10
>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}
Probab=7.33 E-value=45 Score=24.70 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=12.4
Q ss_pred hhhhhhccccceeeeeee
Q 005677 62 QSFAEHLYGKSVRICSTC 79 (683)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~ 79 (683)
...-=|+|||++|..++-
T Consensus 22 p~~~~H~YGK~~RpgRKm 39 (79)
T d3etja1 22 PLVHLHWYDKEVRPGRKV 39 (79)
T ss_dssp TTCEEEECCCCCCTTCEE
T ss_pred CCcEEEecCCCCCCCCcE
Confidence 345579999988765443
Done!