Query 005679
Match_columns 683
No_of_seqs 427 out of 2744
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 12:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00653 GlnA glutamine synth 100.0 2.1E-60 4.5E-65 525.7 30.6 271 401-683 5-313 (460)
2 COG0174 GlnA Glutamine synthet 100.0 4.7E-59 1E-63 505.7 29.6 270 398-683 5-297 (443)
3 PRK09469 glnA glutamine synthe 100.0 1.4E-58 3E-63 511.7 31.1 270 400-683 7-321 (469)
4 TIGR03105 gln_synth_III glutam 100.0 2.4E-58 5.2E-63 506.5 31.2 269 402-683 4-291 (435)
5 PRK02925 glucuronate isomerase 100.0 2.6E-54 5.7E-59 462.8 26.9 361 5-381 18-466 (466)
6 COG1904 UxaC Glucuronate isome 100.0 5.5E-51 1.2E-55 424.1 22.2 359 5-379 17-462 (463)
7 PF02614 UxaC: Glucuronate iso 100.0 2.8E-48 6E-53 424.2 18.0 359 4-378 16-462 (462)
8 PLN02284 glutamine synthetase 100.0 6E-47 1.3E-51 405.9 26.4 254 410-683 25-290 (354)
9 PLN03036 glutamine synthetase; 100.0 4.2E-43 9.1E-48 380.6 25.1 254 410-683 80-350 (432)
10 PF00120 Gln-synt_C: Glutamine 100.0 3.6E-43 7.7E-48 364.0 13.7 178 503-683 1-201 (259)
11 COG2159 Predicted metal-depend 99.9 4E-22 8.7E-27 209.5 19.2 153 206-382 136-292 (293)
12 KOG0683 Glutamine synthetase [ 99.8 2.4E-20 5.2E-25 191.7 12.0 253 401-682 22-287 (380)
13 PF04909 Amidohydro_2: Amidohy 99.7 1.2E-18 2.7E-23 180.8 5.6 147 217-380 120-273 (273)
14 PF03951 Gln-synt_N: Glutamine 99.4 7.6E-13 1.7E-17 113.0 7.3 80 407-497 1-84 (84)
15 cd01311 PDC_hydrolase 2-pyrone 99.4 2.6E-12 5.5E-17 133.9 12.4 138 214-377 110-263 (263)
16 COG3618 Predicted metal-depend 99.2 1.8E-10 3.9E-15 117.5 14.0 139 216-380 126-278 (279)
17 cd01310 TatD_DNAse TatD like p 99.1 7.2E-10 1.6E-14 114.0 11.5 147 210-379 104-251 (251)
18 COG3968 Uncharacterized protei 99.0 3.2E-09 6.9E-14 112.0 14.7 111 524-635 215-339 (724)
19 TIGR00010 hydrolase, TatD fami 98.7 1.2E-07 2.6E-12 97.6 11.0 143 212-380 106-252 (252)
20 KOG4245 Predicted metal-depend 98.0 9.4E-06 2E-10 78.0 5.4 184 177-383 68-290 (297)
21 PRK10812 putative DNAse; Provi 98.0 8.3E-05 1.8E-09 77.6 12.6 142 215-381 112-257 (265)
22 cd00530 PTE Phosphotriesterase 97.9 0.00015 3.3E-09 76.6 14.5 146 216-378 138-293 (293)
23 COG0418 PyrC Dihydroorotase [N 97.8 0.00074 1.6E-08 69.6 16.7 213 145-383 47-306 (344)
24 PRK11449 putative deoxyribonuc 97.8 0.00017 3.6E-09 75.0 12.5 139 215-380 115-258 (258)
25 PF01026 TatD_DNase: TatD rela 97.7 0.00013 2.8E-09 75.7 8.9 140 212-379 109-255 (255)
26 COG0084 TatD Mg-dependent DNas 97.6 0.00058 1.3E-08 70.5 11.7 139 215-380 113-256 (256)
27 PRK09875 putative hydrolase; P 97.4 0.0047 1E-07 65.3 16.0 146 220-379 145-292 (292)
28 cd01294 DHOase Dihydroorotase 97.3 0.0042 9.2E-08 67.1 14.8 156 214-381 113-298 (335)
29 PRK10425 DNase TatD; Provision 97.2 0.0025 5.5E-08 66.2 11.4 141 215-380 109-258 (258)
30 COG1099 Predicted metal-depend 97.1 0.0048 1E-07 61.1 11.5 136 219-381 119-254 (254)
31 TIGR02050 gshA_cyan_rel unchar 96.5 0.02 4.3E-07 60.5 11.3 82 526-630 1-84 (287)
32 PRK05451 dihydroorotase; Provi 96.4 0.037 8E-07 60.1 13.1 80 212-296 116-200 (345)
33 PRK13516 gamma-glutamyl:cystei 96.4 0.024 5.2E-07 62.0 11.5 128 524-679 11-169 (373)
34 PRK13517 carboxylate-amine lig 96.4 0.024 5.3E-07 62.2 11.5 128 524-679 10-168 (373)
35 PF02126 PTE: Phosphotriestera 96.3 0.024 5.3E-07 60.3 10.5 148 219-378 147-307 (308)
36 cd01292 metallo-dependent_hydr 96.3 0.025 5.4E-07 57.8 10.3 104 213-328 132-237 (275)
37 PLN02599 dihydroorotase 96.0 0.093 2E-06 57.3 13.2 157 213-381 135-323 (364)
38 TIGR00856 pyrC_dimer dihydroor 95.7 0.16 3.4E-06 55.2 13.4 80 212-295 113-196 (341)
39 PRK13515 carboxylate-amine lig 95.7 0.077 1.7E-06 58.2 11.1 125 524-679 5-162 (371)
40 PLN02611 glutamate--cysteine l 95.1 0.068 1.5E-06 60.0 8.5 86 524-629 67-168 (482)
41 COG1831 Predicted metal-depend 95.1 0.14 2.9E-06 52.5 9.7 134 217-382 148-284 (285)
42 COG2355 Zn-dependent dipeptida 94.9 0.53 1.2E-05 49.9 14.0 136 219-379 154-308 (313)
43 PRK13518 carboxylate-amine lig 94.5 0.13 2.9E-06 55.8 8.6 81 526-628 14-95 (357)
44 TIGR01436 glu_cys_lig_pln glut 93.9 0.39 8.6E-06 53.7 10.8 100 512-629 7-125 (446)
45 TIGR02048 gshA_cyano glutamate 93.8 0.26 5.5E-06 54.1 9.1 122 526-679 2-151 (376)
46 cd01297 D-aminoacylase D-amino 93.7 1 2.2E-05 50.2 13.9 150 210-381 195-355 (415)
47 cd01302 Cyclic_amidohydrolases 93.6 1.3 2.8E-05 47.9 14.0 143 215-381 116-287 (337)
48 KOG3020 TatD-related DNase [Re 93.5 0.47 1E-05 49.9 10.0 94 216-328 137-231 (296)
49 cd01314 D-HYD D-hydantoinases 93.1 1.6 3.5E-05 49.0 14.3 115 259-383 227-378 (447)
50 PF04107 GCS2: Glutamate-cyste 92.2 0.16 3.4E-06 53.8 4.4 48 582-629 34-82 (288)
51 KOG2902 Dihydroorotase [Nucleo 92.1 0.5 1.1E-05 47.6 7.3 113 215-331 118-251 (344)
52 TIGR01975 isoAsp_dipep isoaspa 92.0 1.2 2.6E-05 49.3 11.1 141 227-381 188-344 (389)
53 cd01301 rDP_like renal dipepti 91.7 2.4 5.2E-05 45.3 12.7 69 300-377 239-309 (309)
54 PF01244 Peptidase_M19: Membra 91.0 1.1 2.5E-05 48.1 9.5 71 300-379 247-319 (320)
55 PRK09357 pyrC dihydroorotase; 89.5 3.5 7.7E-05 45.9 12.2 161 215-382 160-365 (423)
56 COG2170 Uncharacterized conser 89.1 0.86 1.9E-05 48.5 6.4 87 587-679 43-160 (369)
57 cd01307 Met_dep_hydrolase_B Me 89.1 5.2 0.00011 43.1 12.8 134 218-381 153-297 (338)
58 PLN02942 dihydropyrimidinase 88.5 9.5 0.00021 43.5 14.9 158 215-382 168-383 (486)
59 cd01309 Met_dep_hydrolase_C Me 88.3 5 0.00011 43.8 12.1 142 212-384 178-323 (359)
60 TIGR03444 gshA_related glutama 87.7 3 6.5E-05 45.7 9.6 44 584-628 63-107 (390)
61 COG1735 Php Predicted metal-de 87.4 3.7 8.1E-05 43.1 9.6 149 219-381 157-315 (316)
62 PLN02795 allantoinase 86.8 14 0.00029 42.5 14.9 157 214-381 212-428 (505)
63 cd01315 L-HYD_ALN L-Hydantoina 84.9 10 0.00022 42.5 12.6 162 213-381 161-373 (447)
64 TIGR00857 pyrC_multi dihydroor 84.3 15 0.00033 40.8 13.5 162 213-381 146-351 (411)
65 PRK07369 dihydroorotase; Provi 82.1 14 0.00031 41.2 12.1 161 215-381 163-367 (418)
66 cd01299 Met_dep_hydrolase_A Me 80.4 63 0.0014 34.5 16.2 23 213-235 159-181 (342)
67 PF06877 RraB: Regulator of ri 80.0 10 0.00022 33.4 8.1 95 506-627 2-98 (104)
68 cd01317 DHOase_IIa Dihydroorot 79.6 23 0.0005 38.8 12.6 34 344-381 292-325 (374)
69 TIGR02967 guan_deamin guanine 78.5 24 0.00051 39.0 12.3 108 215-328 187-299 (401)
70 PF04273 DUF442: Putative phos 78.3 2.9 6.2E-05 37.6 4.0 70 167-237 26-96 (110)
71 TIGR03121 one_C_dehyd_A formyl 76.3 25 0.00054 40.6 11.7 61 317-381 375-450 (556)
72 PRK08323 phenylhydantoinase; V 76.0 27 0.00058 39.3 12.1 33 345-381 344-376 (459)
73 PRK09228 guanine deaminase; Pr 75.1 51 0.0011 36.9 13.9 108 214-327 211-323 (433)
74 cd04869 ACT_GcvR_2 ACT domains 74.0 6.6 0.00014 32.5 5.0 65 566-632 11-81 (81)
75 cd01303 GDEase Guanine deamina 73.9 59 0.0013 36.3 14.0 105 215-327 209-320 (429)
76 PRK10657 isoaspartyl dipeptida 73.0 37 0.00081 37.1 12.0 141 229-382 192-344 (388)
77 cd01300 YtcJ_like YtcJ_like me 73.0 15 0.00033 41.5 9.2 68 211-282 292-359 (479)
78 PRK07213 chlorohydrolase; Prov 72.3 1.1E+02 0.0023 33.5 15.4 146 212-381 177-326 (375)
79 PRK08044 allantoinase; Provisi 72.2 43 0.00094 37.7 12.5 119 259-381 232-375 (449)
80 PRK09059 dihydroorotase; Valid 71.9 37 0.00079 38.1 11.7 161 214-381 166-370 (429)
81 TIGR02033 D-hydantoinase D-hyd 71.8 67 0.0014 35.9 13.9 35 344-382 345-379 (454)
82 COG3453 Uncharacterized protei 69.6 10 0.00022 34.4 5.2 71 167-237 27-97 (130)
83 PRK09061 D-glutamate deacylase 69.5 93 0.002 35.7 14.5 33 343-379 401-434 (509)
84 PF13740 ACT_6: ACT domain; PD 69.4 14 0.00031 30.5 5.9 62 566-630 14-75 (76)
85 PRK08204 hypothetical protein; 69.3 66 0.0014 36.0 13.2 101 216-327 203-303 (449)
86 PRK06189 allantoinase; Provisi 68.2 43 0.00094 37.7 11.4 117 259-381 229-373 (451)
87 PRK07583 cytosine deaminase-li 67.2 69 0.0015 35.9 12.7 56 213-272 211-266 (438)
88 TIGR03178 allantoinase allanto 66.7 51 0.0011 37.0 11.5 33 344-380 337-369 (443)
89 PRK08417 dihydroorotase; Provi 66.3 94 0.002 34.2 13.3 163 215-381 131-335 (386)
90 cd01295 AdeC Adenine deaminase 65.4 83 0.0018 35.1 12.8 126 219-380 126-254 (422)
91 PRK02382 dihydroorotase; Provi 65.0 62 0.0013 36.3 11.8 28 350-381 334-361 (443)
92 cd01306 PhnM PhnM is believed 64.6 1.9E+02 0.0041 31.2 14.8 151 185-381 141-293 (325)
93 PRK12394 putative metallo-depe 60.7 2.2E+02 0.0048 31.1 14.9 138 215-381 174-321 (379)
94 PRK09045 N-ethylammeline chlor 60.5 65 0.0014 36.1 11.0 108 215-328 203-312 (443)
95 cd01316 CAD_DHOase The eukaryo 60.2 70 0.0015 34.7 10.7 113 260-381 146-281 (344)
96 cd01308 Isoaspartyl-dipeptidas 59.6 1.3E+02 0.0027 33.0 12.8 72 305-381 263-342 (387)
97 PRK09237 dihydroorotase; Provi 58.8 2E+02 0.0043 31.4 14.2 18 364-381 299-316 (380)
98 PRK08203 hydroxydechloroatrazi 58.7 51 0.0011 37.0 9.7 106 215-328 215-324 (451)
99 cd01298 ATZ_TRZ_like TRZ/ATZ f 58.3 52 0.0011 36.0 9.6 106 215-328 195-304 (411)
100 PRK08418 chlorohydrolase; Prov 57.4 1.1E+02 0.0025 33.8 12.1 102 215-327 191-313 (408)
101 cd04872 ACT_1ZPV ACT domain pr 56.8 17 0.00038 30.7 4.3 67 566-633 13-79 (88)
102 PRK13404 dihydropyrimidinase; 56.8 1.2E+02 0.0026 34.5 12.3 34 344-381 352-385 (477)
103 PRK00194 hypothetical protein; 56.7 15 0.00033 31.1 3.9 67 566-633 15-81 (90)
104 PRK15493 5-methylthioadenosine 56.3 55 0.0012 36.7 9.4 105 215-327 198-306 (435)
105 KOG0558 Dihydrolipoamide trans 55.0 11 0.00023 40.2 3.1 54 564-633 248-302 (474)
106 cd01318 DHOase_IIb Dihydroorot 54.9 1.6E+02 0.0035 32.1 12.5 115 259-382 168-308 (361)
107 cd01304 FMDH_A Formylmethanofu 54.7 1.3E+02 0.0028 34.7 11.9 17 365-381 431-447 (541)
108 PF03102 NeuB: NeuB family; I 54.4 16 0.00035 37.6 4.3 77 204-295 93-180 (241)
109 cd04870 ACT_PSP_1 CT domains f 51.5 30 0.00066 28.3 4.8 65 566-632 11-75 (75)
110 TIGR01244 conserved hypothetic 51.2 32 0.00069 31.9 5.4 19 168-186 27-45 (135)
111 PRK06151 N-ethylammeline chlor 51.1 91 0.002 35.5 10.2 110 211-326 218-338 (488)
112 TIGR03583 EF_0837 probable ami 50.3 92 0.002 33.8 9.7 22 356-381 292-313 (365)
113 PRK08393 N-ethylammeline chlor 47.0 1.5E+02 0.0033 32.9 11.1 106 214-327 189-298 (424)
114 smart00874 B5 tRNA synthetase 46.8 35 0.00076 27.5 4.4 48 569-626 22-71 (71)
115 PRK06361 hypothetical protein; 46.4 1.4E+02 0.0029 29.7 9.6 96 265-380 115-210 (212)
116 PRK06038 N-ethylammeline chlor 45.3 1.4E+02 0.0031 33.2 10.5 107 213-327 189-299 (430)
117 cd04893 ACT_GcvR_1 ACT domains 43.7 66 0.0014 26.5 5.7 63 566-631 13-75 (77)
118 PRK07228 N-ethylammeline chlor 43.1 1.4E+02 0.0031 33.2 10.2 106 215-328 200-309 (445)
119 COG3364 Zn-ribbon containing p 41.6 19 0.00041 31.6 2.0 27 573-600 52-78 (112)
120 cd01312 Met_dep_hydrolase_D Me 41.5 1.6E+02 0.0034 32.4 9.9 106 215-328 164-291 (381)
121 COG0402 SsnA Cytosine deaminas 41.4 2.4E+02 0.0052 31.3 11.5 100 215-330 199-310 (421)
122 PF04468 PSP1: PSP1 C-terminal 40.2 37 0.0008 29.1 3.7 61 565-630 25-85 (88)
123 PRK06687 chlorohydrolase; Vali 40.2 1.9E+02 0.0041 32.1 10.4 105 215-327 197-305 (419)
124 PRK12393 amidohydrolase; Provi 39.1 3.2E+02 0.007 30.7 12.2 107 213-327 217-327 (457)
125 cd01313 Met_dep_hydrolase_E Me 39.0 2.8E+02 0.0061 30.8 11.5 104 215-327 208-315 (418)
126 PTZ00372 endonuclease 4-like p 38.4 4.9E+02 0.011 29.1 12.9 108 218-327 222-350 (413)
127 PRK06886 hypothetical protein; 38.4 5.4E+02 0.012 27.8 13.2 50 214-271 162-215 (329)
128 KOG4127 Renal dipeptidase [Pos 38.2 2E+02 0.0044 31.3 9.3 123 248-380 255-390 (419)
129 cd01296 Imidazolone-5PH Imidaz 38.2 4E+02 0.0086 28.7 12.4 24 213-236 192-215 (371)
130 PRK07627 dihydroorotase; Provi 37.8 2.7E+02 0.0059 31.1 11.2 81 215-295 162-260 (425)
131 PRK11191 RNase E inhibitor pro 37.6 2.2E+02 0.0047 26.7 8.6 92 508-626 12-106 (138)
132 TIGR01224 hutI imidazoloneprop 37.2 3.7E+02 0.008 29.1 12.0 22 215-236 198-219 (377)
133 PF03484 B5: tRNA synthetase B 37.0 54 0.0012 26.7 4.0 48 568-626 21-70 (70)
134 PTZ00124 adenosine deaminase; 36.2 1.4E+02 0.003 32.8 8.2 84 147-236 139-228 (362)
135 PRK14085 imidazolonepropionase 35.9 3.9E+02 0.0085 29.1 11.9 139 212-381 205-344 (382)
136 cd01305 archeal_chlorohydrolas 35.9 1.4E+02 0.003 30.7 7.9 98 216-328 127-224 (263)
137 COG3572 GshA Gamma-glutamylcys 34.9 68 0.0015 35.1 5.3 46 585-631 91-137 (456)
138 PRK09236 dihydroorotase; Revie 34.7 5.7E+02 0.012 28.6 13.2 28 350-381 341-368 (444)
139 cd04882 ACT_Bt0572_2 C-termina 33.4 1E+02 0.0022 23.7 5.1 52 566-628 11-64 (65)
140 PRK09356 imidazolonepropionase 32.6 4.5E+02 0.0098 28.7 11.8 23 214-236 222-244 (406)
141 cd04875 ACT_F4HF-DF N-terminal 32.4 91 0.002 25.2 4.8 60 566-627 11-73 (74)
142 PRK07203 putative chlorohydrol 32.3 76 0.0016 35.6 5.7 106 214-327 205-314 (442)
143 PRK13011 formyltetrahydrofolat 31.3 90 0.002 33.0 5.7 66 566-633 19-86 (286)
144 PRK06380 metal-dependent hydro 30.2 6.3E+02 0.014 27.8 12.5 106 215-327 187-296 (418)
145 PRK11589 gcvR glycine cleavage 29.0 1.6E+02 0.0034 29.2 6.5 63 565-633 106-178 (190)
146 cd01321 ADGF Adenosine deamina 27.6 1.8E+02 0.0038 31.7 7.3 85 147-237 105-204 (345)
147 cd01320 ADA Adenosine deaminas 27.2 7.6E+02 0.016 26.1 16.9 24 213-236 172-195 (325)
148 PRK07572 cytosine deaminase; V 26.3 2.9E+02 0.0064 30.7 9.0 23 215-237 192-214 (426)
149 COG3937 Uncharacterized conser 25.9 1.3E+02 0.0029 26.7 4.7 32 341-372 23-54 (108)
150 PRK09060 dihydroorotase; Valid 25.6 7.8E+02 0.017 27.6 12.3 30 348-381 335-364 (444)
151 PF06972 DUF1296: Protein of u 24.9 2.2E+02 0.0048 22.6 5.2 38 53-91 5-44 (60)
152 TIGR01178 ade adenine deaminas 24.2 4.1E+02 0.0089 30.9 9.8 129 220-381 168-296 (552)
153 cd04908 ACT_Bt0572_1 N-termina 22.9 2.7E+02 0.0059 21.8 5.8 22 567-588 14-35 (66)
154 PRK05985 cytosine deaminase; P 22.9 8.7E+02 0.019 26.4 11.9 24 214-237 191-214 (391)
155 COG0044 PyrC Dihydroorotase an 22.7 9.3E+02 0.02 27.0 12.0 160 211-382 155-363 (430)
156 PRK09230 cytosine deaminase; P 22.4 7.4E+02 0.016 27.6 11.3 57 213-273 194-250 (426)
157 PF09845 DUF2072: Zn-ribbon co 21.3 41 0.0009 31.0 0.7 21 578-599 82-102 (131)
158 PRK09229 N-formimino-L-glutama 21.1 9.3E+02 0.02 26.9 11.8 105 214-327 216-324 (456)
159 PRK02134 hypothetical protein; 20.8 4.6E+02 0.01 27.1 8.5 59 215-273 135-207 (249)
160 PRK06027 purU formyltetrahydro 20.5 2.1E+02 0.0044 30.3 5.9 66 566-633 18-86 (286)
No 1
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=2.1e-60 Score=525.66 Aligned_cols=271 Identities=28% Similarity=0.438 Sum_probs=238.0
Q ss_pred hhhccCCceEEEEEEecCCCCceeEEEechhhhHHHhhcCccccccccccccccCCCCCCCCCCCCccEEEEeecCCcee
Q 005679 401 SDAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWR 480 (683)
Q Consensus 401 ~~~~~~~i~~V~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~l~PD~~Tl~~ 480 (683)
..+++++|+||+++|+|++|++|+|.||+++|.+.+.++|++++.+++. +. ...+.+|++++||++|+++
T Consensus 5 ~~l~~~~i~~v~~~~~Dl~G~~rgk~vp~~~~~~~~~~~G~~~~~~~~~------~~----~~~~~~D~~l~PD~~Tl~~ 74 (460)
T TIGR00653 5 KLIKEENVKFVDLRFTDIKGKPQHVEIPASALDKEAFEEGIMFDGSSIR------GF----QGIEESDMLLKPDPSTAVI 74 (460)
T ss_pred HHHHhCCCcEEEEEEECCCCCEeeEEEeHHHhhHHHhcCCeeccccccc------cc----ccCCCCcEEEeccCCccee
Confidence 3456689999999999999999999999999975334689988876541 11 0135679999999999999
Q ss_pred ccCCC-CcceEEEEeecC-CCCcCCCChHHHHHHHHHHHHHhcCCeeeeeeeeEEEEEeecccC----------------
Q 005679 481 IPWQK-QEEMIMADMHLK-PGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLRE---------------- 542 (683)
Q Consensus 481 ~pw~~-~~a~v~~d~~~~-~g~p~~~cPR~~L~r~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~---------------- 542 (683)
+||.+ ++++|+||+++. ||+|++.|||++|+|++++++++.|+++++|+|+|||||+.....
T Consensus 75 ~pw~~~~~a~v~~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (460)
T TIGR00653 75 DPWRAEKTLRVICDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGR 154 (460)
T ss_pred ccCCCCCcEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeecccccc
Confidence 99965 589999999998 999999999999999999998678999999999999999852211
Q ss_pred -----CCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHH
Q 005679 543 -----GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVL 617 (683)
Q Consensus 543 -----~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~i 617 (683)
+...+.|.+.++||+..+++...+++++|++.|+++||+|+++|+|+|||||||++.|.++|+|||+++++|++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~i 234 (460)
T TIGR00653 155 WNEESGNRGYKPRDKGGYFPVAPTDTAVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVV 234 (460)
T ss_pred ccccCCcCCCcccCCccccCCCCcccHHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHHH
Confidence 112345666666888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEeeec---------------ccCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhcCCCCCC
Q 005679 618 RAVARKHGLLATFVPN---------------LWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNRL 682 (683)
Q Consensus 618 k~vA~~~G~~ATFmpK---------------l~~~g~N~f~~~~~~~~~~lS~~~~~fiaGiL~h~~al~a~~~Pt~NSY 682 (683)
|+||++||+.|||||| ||++|+|+|. +++++.+||+++++||||||+|++++++|++||+|||
T Consensus 235 k~vA~~~G~~ATFmpKP~~~~~GSG~H~H~Sl~d~g~n~F~--d~~~~~~lS~~~~~fiaGiL~h~~~l~a~~~PtvNSY 312 (460)
T TIGR00653 235 KNVARKHGKTATFMPKPLFGDNGSGMHCHQSLWKDGENLFA--GEEGYAGLSETALYYIGGILKHAKALAAFTNPTVNSY 312 (460)
T ss_pred HHHHHHhCCEEEEecccCCCCCcCceeEEECccCCCeeccC--CCCCCcccCHHHHHHHHHHHHHHHHhhhHhcCCCcch
Confidence 9999999999999999 7888999998 4445567999999999999999999999999999999
Q ss_pred C
Q 005679 683 L 683 (683)
Q Consensus 683 ~ 683 (683)
+
T Consensus 313 k 313 (460)
T TIGR00653 313 K 313 (460)
T ss_pred h
Confidence 6
No 2
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-59 Score=505.66 Aligned_cols=270 Identities=30% Similarity=0.487 Sum_probs=239.0
Q ss_pred hhhhhhccCCceEEEEEEecCCCCceeEEEech----hhhHHHhhcCcccccccc-ccccccCCCCCCCCCCCCccEEEE
Q 005679 398 LKKSDAFESDVSLIRVIWVDASGQHRCRVVPVK----RFNDIVTKYGVGLTFACM-GMTSAVDGPADGTNLSGTGEIRLM 472 (683)
Q Consensus 398 ~~~~~~~~~~i~~V~~~~~D~~G~~R~k~vp~~----~~~~~~~~~g~~~~~~~~-~~~~~~d~~~~~~~~~~~gd~~l~ 472 (683)
.+..++++++|++|+++|+|+.|++|+|++|++ .+... .+.|+.+++++. ++.. -+.+|++|+
T Consensus 5 ~~~~~~~~~~V~~v~~~f~D~~G~~r~k~ip~~~~~~~~~~~-~~~g~~fdgss~~g~~~-----------i~~sDm~l~ 72 (443)
T COG0174 5 DVLKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSVLAQL-FEGGVVFDGSSIAGFEG-----------IGESDMVLK 72 (443)
T ss_pred HHHHHHHhCCceEEEEEEECCCCCeeeEEEecccchhHHHhh-hccCcCcCCccccccCC-----------CCCCCEEEe
Confidence 345788999999999999999999999999999 34443 356777776653 2210 146899999
Q ss_pred eecCCceeccCCCC-cceEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCCe-eeeeeeeEEEEEeecccCCCCCcccC
Q 005679 473 PDLSTRWRIPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLV-LNAGFEIEFYLLKSVLREGKEEWVPI 550 (683)
Q Consensus 473 PD~~Tl~~~pw~~~-~a~v~~d~~~~~g~p~~~cPR~~L~r~~~~~~~~~G~~-~~~g~E~EF~l~~~~~~~~~~~~~p~ 550 (683)
||++|++++||.++ +|+|+||+++++|+|++.|||++|||++++++ +.|+. +.+|+|+|||||++.. .+.....|.
T Consensus 73 Pd~~T~~~~Pw~~~~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~-~~G~~~~~~g~E~EFfLfd~~~-~~~~~~~~~ 150 (443)
T COG0174 73 PDLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLK-DEGLAPAVVGPELEFFLFDRDG-RDPDGGRPA 150 (443)
T ss_pred eccCceeeCCCCCCCcEEEEEEEECCCCCcCCCChHHHHHHHHHHHH-hcCCccceeecceeEEEeeccc-CCcccCccC
Confidence 99999999999987 89999999999999999999999999999999 57997 5999999999999732 222114677
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEe
Q 005679 551 DFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (683)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATF 630 (683)
+.++||+..+++...+++++|+..|+++||+||++|||+|||||||++++.++|++||+++++|++||+||++||+.|||
T Consensus 151 ~~~~yf~~~~~~~~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTF 230 (443)
T COG0174 151 DKGGYFDVAPLDEAEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATF 230 (443)
T ss_pred CCCcccCccccccHHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec---------------ccC-CCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhcCCCCCCC
Q 005679 631 VPN---------------LWQ-NGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNRLL 683 (683)
Q Consensus 631 mpK---------------l~~-~g~N~f~~~~~~~~~~lS~~~~~fiaGiL~h~~al~a~~~Pt~NSY~ 683 (683)
||| ||+ +|+|+|+ ++++..+||++++|||||||+|+++++||+|||+|||+
T Consensus 231 MpKP~~g~~GSGMH~H~Sl~~~dg~nlF~--d~~~~~~lS~~~~~~igGilkha~~~~ai~~PtvNSYk 297 (443)
T COG0174 231 MPKPFFGDNGSGMHVHQSLWDKDGGNLFA--DEDGYAGLSETALHFIGGILKHAPALTAITAPTVNSYK 297 (443)
T ss_pred eCCCCCCCCCCceeEEEEEecCCCCcccc--CCCCcccHHHHHHHHHHHHHHHHHHHHhHhCCCcchhh
Confidence 999 774 5569999 45567789999999999999999999999999999996
No 3
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=1.4e-58 Score=511.74 Aligned_cols=270 Identities=23% Similarity=0.334 Sum_probs=235.3
Q ss_pred hhhhccCCceEEEEEEecCCCCceeEEEechhhhHHHhhcCccccccccccccccCCCCCCCCCCCCccEEEEeecCCce
Q 005679 400 KSDAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRW 479 (683)
Q Consensus 400 ~~~~~~~~i~~V~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~l~PD~~Tl~ 479 (683)
..++++++|++|+++|+|++|++|+|.||+++|.+...++|++++.+++. +. ...+.+|++++||++|++
T Consensus 7 ~~~l~~~~i~~v~~~~~Dl~G~~rgk~ip~~~~~~~~~~~G~~f~~~~~~------g~----~~~~~~D~~l~PD~~Tl~ 76 (469)
T PRK09469 7 LTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIG------GW----KGINESDMVLMPDASTAV 76 (469)
T ss_pred HHHHHhCCCCEEEEEEECCCCCEeEEEEEHHHhhHHHhcCCceecccccc------cc----CcCCCCCEEEEEcCCccE
Confidence 34566789999999999999999999999999985334689988877652 11 113678999999999999
Q ss_pred eccCC-CCcceEEEEeecCC-CCcCCCChHHHHHHHHHHHHHhcCC--eeeeeeeeEEEEEeecc---c-----------
Q 005679 480 RIPWQ-KQEEMIMADMHLKP-GEPWEYCPREALRKVSRLLKEEFNL--VLNAGFEIEFYLLKSVL---R----------- 541 (683)
Q Consensus 480 ~~pw~-~~~a~v~~d~~~~~-g~p~~~cPR~~L~r~~~~~~~~~G~--~~~~g~E~EF~l~~~~~---~----------- 541 (683)
++||. +++++|+||+++.+ |+|++.|||++|||++++++ +.|+ ++++|+|+|||||++.. .
T Consensus 77 ~~Pw~~~~~a~v~~d~~~~~~g~p~~~~PR~iLkr~~~~l~-~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~ 155 (469)
T PRK09469 77 LDPFFEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLR-STGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDI 155 (469)
T ss_pred ECCcCCCCcEEEEEEEEECCCCCcCCcCHHHHHHHHHHHHH-HcCCCcceeEecceEEEEEeccccccCccccccccccc
Confidence 99995 56899999999985 89999999999999999998 6799 99999999999998522 0
Q ss_pred -----------CCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCCceeEeeccCC-CCceEEecCcChHHHHHHH
Q 005679 542 -----------EGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAG-KGQFEIALGHTVAAKAADN 609 (683)
Q Consensus 542 -----------~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~~-pGQ~Ei~l~~~~~l~aaD~ 609 (683)
.+.....|.+.++||+..+.+...+++++|++.|+++||+|+++|+|+| ||||||++.|.++|+|||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~ 235 (469)
T PRK09469 156 EAAWNSGTKYEGGNKGHRPGVKGGYFPVPPVDSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADE 235 (469)
T ss_pred hhcccccccccCCCCCCccCCCccccCCCcccchHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHH
Confidence 0111234455555788888999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCeEEeeec---------------ccCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhh
Q 005679 610 LIFTREVLRAVARKHGLLATFVPN---------------LWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAF 674 (683)
Q Consensus 610 ~~~~k~~ik~vA~~~G~~ATFmpK---------------l~~~g~N~f~~~~~~~~~~lS~~~~~fiaGiL~h~~al~a~ 674 (683)
++++|++||+||++||+.|||||| ||++|+|+|.+ + +..+||+++++||||||+|++++++|
T Consensus 236 ~~~~k~~vk~va~~~g~~atFmpKP~~~~~GsG~H~H~Sl~~~g~N~F~~--~-~~~~ls~~~~~fiaGlL~h~~~l~a~ 312 (469)
T PRK09469 236 IQIYKYVVHNVAHAFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAG--D-KYAGLSEQALYYIGGIIKHAKAINAL 312 (469)
T ss_pred HHHHHHHHHHHHHHhCCEEEEeccccCCCCCceeEEEEeecCCCccccCC--C-CcCCcCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 78889999984 2 23679999999999999999999999
Q ss_pred hcCCCCCCC
Q 005679 675 TAPVPNRLL 683 (683)
Q Consensus 675 ~~Pt~NSY~ 683 (683)
++||+|||+
T Consensus 313 ~~PtvNSYk 321 (469)
T PRK09469 313 ANPTTNSYK 321 (469)
T ss_pred hcCCCchHh
Confidence 999999996
No 4
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=2.4e-58 Score=506.52 Aligned_cols=269 Identities=27% Similarity=0.465 Sum_probs=230.7
Q ss_pred hhccCCceEEEEEEecCCCCceeEEEechhhhHHHhhcCccccccccccccccCCCCCCCCCCCCccEEEEeecCCceec
Q 005679 402 DAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRI 481 (683)
Q Consensus 402 ~~~~~~i~~V~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~l~PD~~Tl~~~ 481 (683)
++++++|++|+++|+|++|++|+|.||+++|.+. .++|++++.+++.+.. . ..+.+|++|+||++|++++
T Consensus 4 ~l~~~~i~~v~~~~~D~~G~~r~k~vp~~~~~~~-~~~G~~~~~~~~~~~~----~-----~~~~~D~~l~PD~~Tl~~~ 73 (435)
T TIGR03105 4 LARDKGIKYFLASFVDLHGVQKAKLVPAEAIDHM-ATGGAGFAGFAAWGLG----Q-----SPADPDLMAIPDLDSLTQL 73 (435)
T ss_pred hHhhCCCCEEEEEEECCCCCeeEEEEeHHHHHHH-HcCCCcccchhhhccC----C-----CCCCCCEEEEeccccceeC
Confidence 3456789999999999999999999999999986 4689999877665311 0 1245899999999999999
Q ss_pred cCCCCcceEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCCeeeeeeeeEEEEEeecccCCCC---CcccCCCCCcccC
Q 005679 482 PWQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE---EWVPIDFTPYCST 558 (683)
Q Consensus 482 pw~~~~a~v~~d~~~~~g~p~~~cPR~~L~r~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~---~~~p~~~~~~~~~ 558 (683)
||.+++++|+|+++. +|+|++.|||++|+|++++++ +.|+++++|+|+|||||+.. .++.. ...+....++|+.
T Consensus 74 pw~~~~a~v~~d~~~-~G~p~~~~PR~vL~r~~~~~~-~~G~~~~~g~E~EF~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 150 (435)
T TIGR03105 74 PWQPGVAWVAADLHV-NGKPYPQAPRVVLKRQLAEAA-ELGLTLNTGVECEFFLLRRD-EDGSLSIADRADTLAKPCYDQ 150 (435)
T ss_pred CCCCCeEEEEEEEee-CCCcCCCCHHHHHHHHHHHHH-hcCCceeEEeceEEEEEecC-CCCCcccCCCCCCCCccCCCC
Confidence 999999999999976 899999999999999999998 68999999999999999863 22210 1111112335677
Q ss_pred CcccchHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeec-----
Q 005679 559 AAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN----- 633 (683)
Q Consensus 559 ~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpK----- 633 (683)
.+.+...+++++|++.|+++||+||++|+|+|||||||++.|.++|+|||+++++|++||+||++||++||||||
T Consensus 151 ~~~~~~~~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~~~ 230 (435)
T TIGR03105 151 RGLMRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFADL 230 (435)
T ss_pred cchhhhhHHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCCCC
Confidence 777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------cc-CCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhcCCCCCCC
Q 005679 634 ----------LW-QNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNRLL 683 (683)
Q Consensus 634 ----------l~-~~g~N~f~~~~~~~~~~lS~~~~~fiaGiL~h~~al~a~~~Pt~NSY~ 683 (683)
+| ++|+|+|.+.+..+..+||+++++||||||+|+|++++|++||+|||+
T Consensus 231 ~GsG~H~H~Sl~d~~g~n~f~d~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~PtvNSYk 291 (435)
T TIGR03105 231 TGNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVNSYK 291 (435)
T ss_pred CccceEEEEeeecCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHCCCCcccc
Confidence 67 478999984221112459999999999999999999999999999996
No 5
>PRK02925 glucuronate isomerase; Reviewed
Probab=100.00 E-value=2.6e-54 Score=462.78 Aligned_cols=361 Identities=16% Similarity=0.191 Sum_probs=303.1
Q ss_pred HHHHHhccCCcccccCCCccc---CC-----------------------CCcchhhccccccCCC----C-CCCCcchh-
Q 005679 5 ELREVVENIELVDGHAHNIVS---LD-----------------------SSFPFIQSFSEATGPA----L-SYAPYSLS- 52 (683)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~~---~~-----------------------~~~~~~~~~~ea~~~~----~-~~~~~~l~- 52 (683)
+|++..+++||||-|||---+ ++ .+.|.+.|+.+|++.. . +..|..+|
T Consensus 18 ~LY~~a~~lPIiDyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~ITg~as~~ekf~~~a~t~p~~~Gn 97 (466)
T PRK02925 18 RLYHDAKDLPIIDYHCHLDPKEIAENKPFKNITELWLKGDHYKWRAMRSNGVDEELITGDASDREKFRAWAKTVPLFIGN 97 (466)
T ss_pred HHHHHHhcCceeCCCCCCCHHHHhccCCCCCHHHHhccCccHHHHHHHHcCCCHHHccCCCCHHHHHHHHHHhhhhhcCC
Confidence 588789999999999998333 11 2357777777776432 1 24444444
Q ss_pred --HHHHHHHHHHHhCCCC-----CHHHHHHHHHH-c-ChhhHHHHHHhhCCcEEEEEecCCCCCCCCChHHHhhhcC---
Q 005679 53 --FKRNLKNIAELYGCDS-----SLQAVEEYRRA-A-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP--- 120 (683)
Q Consensus 53 --~~~~~~~l~~~fg~~~-----~~~~i~~~~~~-l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~--- 120 (683)
|.|+|+||+++|||++ ||++||++||+ | ++++++|.|++++||++||| ||||+|+|+||++++.
T Consensus 98 PlyhW~hlELkr~FGi~~~l~~~nA~~Iwd~~n~~L~~p~f~~r~Ll~~~nVe~icT----TDDP~DdL~~H~~l~~d~~ 173 (466)
T PRK02925 98 PLYHWTHLELRRVFGITELLSPETADEIWDEINELLATPEFRPRALIERFNVEVICT----TDDPLDDLEYHKAIAEDGS 173 (466)
T ss_pred HHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHHHHCCCCCCHHHHHHHCCceEEEe----cCCCCccHHHHHHHHhcCC
Confidence 7889999999999996 99999999998 5 89999999999999999999 9999999999998863
Q ss_pred ---------CCCeEEecchHHH-HHHHhhCC--CCCcccHHHHHHHHHHHHHhhcccceeeeeeecc--ccCCCCCCC--
Q 005679 121 ---------FVGRILRIERLAE-EILDQASP--DGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH-- 184 (683)
Q Consensus 121 ---------~~~~i~rie~~~~-~~~~~~~~--~~~~~~~~~~~~al~~~l~~~~~~~vgfksi~~y--~~gl~~~~~-- 184 (683)
|||+++.|+...+ +++++|.. +.+|.+|++|++||++|+++ |++.||. +|||+..++
T Consensus 174 f~~~VlPtfRPD~a~~i~~~~f~~~~~kL~~~~g~~i~~~~~ll~AL~~R~~~-------F~~~Gc~~sDHgl~~~~~~~ 246 (466)
T PRK02925 174 FDGRVLPTFRPDKAFNIEHEGFADYVEKLGEVTGTDITTFDGLLEALRKRRDY-------FAAHGCRSSDHGLDTVVTAE 246 (466)
T ss_pred CCceEecCcCCccccCCCchhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHcCCEEhhcCCCccCCCC
Confidence 7999999999876 68999864 45799999999999999985 6666666 699986555
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCC------------C-CCCCCCCC----CC
Q 005679 185 VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLRL----SN 247 (683)
Q Consensus 185 ~~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~l~e~a~e~glpvq~H~G~------------G-d~~~~~~~----~~ 247 (683)
.+.+|++++|+++++++.....+...+..+++..+.++++|.||+||+|.|+ | |.|.|... +.
T Consensus 247 ~~~~e~~~if~k~~~g~~lt~~E~~~f~~~~l~~la~~y~e~gwvmQlH~Ga~Rn~n~~~~~~lG~DtG~Dsi~d~~~a~ 326 (466)
T PRK02925 247 LSEAEADAIFAKALAGGTLTEEEIAQFRTAMLTELARMYAEDGWVMQLHIGALRNNNTRMFKKLGPDTGFDSIGDTPIAE 326 (466)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCeEEeecccccCCCHHHHHHhCCCCCcCCCCchhHHH
Confidence 6899999999999986544555667777888888889999999999999999 4 45655433 33
Q ss_pred cc--chHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCe------eEeccccccCCccHHHHHHHHHHHHhhCCCCc
Q 005679 248 PL--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ------VYLDFGLAIPKLSVQGMISSIKELLELAPTKK 319 (683)
Q Consensus 248 p~--~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pn------Vy~d~s~~~~~~~~~g~~~~l~~~le~~~~~k 319 (683)
++ +|+.+-+.+++|+++++.+++.+ ..+++.|+++||+ ||++.+|||++. ++||.+++..+.+.+++++
T Consensus 327 ~L~~lL~~l~~~~~LpktIly~Lnp~~--n~~lat~~g~F~~~~~~gkvq~Ga~WWFnD~-~~GM~~ql~~la~~glls~ 403 (466)
T PRK02925 327 ALSPLLDALGNENDLPKTILYTLNPTD--NEELATMAGNFQGLGIPGKMQFGAGWWFNDQ-KDGMERQMEQLAETGLLSN 403 (466)
T ss_pred HHHHHHHhcccCCCCCeEEEEecCccc--HHHHHHHHcccCCCCCCCccccccchhhccC-HHHHHHHHHHHHhccchhh
Confidence 33 46666666899999999999976 4578999999975 599999999875 8999999999999999999
Q ss_pred EE-EecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhH--HHHHHHHHHHHHHHHHhcCC
Q 005679 320 VM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGE--AIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 320 il-fgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~e--a~~~~~~I~~~NA~rly~l~ 381 (683)
++ |.||+|+|.+ |++|++|||+||++|++||++|++|.++ +++++++|||+||+++|++.
T Consensus 404 fvGmltDSRsflS--y~RHeyFRRilc~~lg~~Ve~G~~P~d~~~l~~iv~dI~y~Na~~yF~~~ 466 (466)
T PRK02925 404 FVGMLTDSRSFLS--YARHEYFRRILCNFLGRWVEEGELPADEELLGEMVKDICYNNAKRYFKLE 466 (466)
T ss_pred cccccccHHHHHh--hhHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhHHHhcCCC
Confidence 99 9999999995 6999999999999999999999998555 69999999999999999863
No 6
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-51 Score=424.08 Aligned_cols=359 Identities=18% Similarity=0.219 Sum_probs=298.6
Q ss_pred HHHHHhccCCcccccCCCcccC-----------------C---------CCcchhhccccccCCC----C-CCCCcchh-
Q 005679 5 ELREVVENIELVDGHAHNIVSL-----------------D---------SSFPFIQSFSEATGPA----L-SYAPYSLS- 52 (683)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~~~-----------------~---------~~~~~~~~~~ea~~~~----~-~~~~~~l~- 52 (683)
.|...+.++||||.|||--=.+ | .+.+-+.++.++++.. . +.++.+.|
T Consensus 17 ~l~~~vkdlPIidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itgd~sdrEkw~afa~~~~~~~Gn 96 (463)
T COG1904 17 RLHAYVKDLPIIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITGDTSDREKWRAFAKTVPLFIGN 96 (463)
T ss_pred HHHHhhcCCCeeCCcCCCCHHHHhhcCCCCCHHHHhhcccHHHHHHHHHcCCchhhcCCCCChHHHHHHHHHhhhhhcCC
Confidence 5677889999999999954321 0 1234444555444321 1 23444444
Q ss_pred --HHHHHHHHHHHhCCCC-----CHHHHHHHHHH-c-ChhhHHHHHHhhCCcEEEEEecCCCCCCCCChHHHhhhcC---
Q 005679 53 --FKRNLKNIAELYGCDS-----SLQAVEEYRRA-A-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP--- 120 (683)
Q Consensus 53 --~~~~~~~l~~~fg~~~-----~~~~i~~~~~~-l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~--- 120 (683)
+.|+|++|+++|||++ |+|+||+++|+ | ++++.+|.|++++||++||| ||||+++|+||++++.
T Consensus 97 P~y~W~hlel~r~FgI~e~ls~~tad~iwd~~n~~La~~~frpRaL~~~~NVevv~T----TDdP~dsL~~H~~l~~d~~ 172 (463)
T COG1904 97 PLYHWTHLELERVFGITELLSEETADEIWDEINDLLAQPDFRPRALIEQFNVEVVCT----TDDPIDSLEYHKELAEDGF 172 (463)
T ss_pred cchhhhHHHHhhhcCcccccCcccHHHHHHHHHHHhCCCCCCHHHHHHHcCeeEEec----CCCCcccHHHHHHHHhcCC
Confidence 6779999999999997 99999999999 5 88999999999999999999 9999999999999876
Q ss_pred --------CCCeEEecchHHH-HHHHhhCC--CCCcccHHHHHHHHHHHHHhhcccceeeeeeecc--ccCCCCCCC--C
Q 005679 121 --------FVGRILRIERLAE-EILDQASP--DGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH--V 185 (683)
Q Consensus 121 --------~~~~i~rie~~~~-~~~~~~~~--~~~~~~~~~~~~al~~~l~~~~~~~vgfksi~~y--~~gl~~~~~--~ 185 (683)
|||+++.||...+ ++++++.. +.++.+|++|++|+++|++ +||+.||. +|||+..+. .
T Consensus 173 ~~~VlPa~RPD~~~~i~~~gf~~~~~kL~~~ag~~~~~~~~~l~Al~~R~~-------~F~~~G~~sSDH~l~t~~~a~~ 245 (463)
T COG1904 173 HGRVLPAWRPDAAVDIERAGFADYVEKLGEVAGTDISTWDGYLDALRKRRE-------YFKSHGATSSDHGLDTADTAEL 245 (463)
T ss_pred CceeccCcCCccccCCCccchHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-------HHHHcCCcccccCCCccccccC
Confidence 8999999999776 88888864 4478899999999999998 47888887 699987766 7
Q ss_pred CHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCC------------C-CCCCCCC----CCCc
Q 005679 186 TKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLR----LSNP 248 (683)
Q Consensus 186 ~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~l~e~a~e~glpvq~H~G~------------G-d~~~~~~----~~~p 248 (683)
+.++|+++|.|.+++......+...+..+++..+.+++++.||+||+|+|. | |.|+|.+ ++++
T Consensus 246 ~~~~a~~if~k~l~G~~lt~~E~~~f~a~~l~~l~km~~~~gwVmQiH~ga~RN~n~~~~~k~G~D~GfDi~~~~~~a~~ 325 (463)
T COG1904 246 SEADADAIFDKRLAGEALSTEEAEQFKAAMLTELAKMSAEDGWVMQIHPGALRNHNPRMFKKLGPDTGFDIPNDTEIAEG 325 (463)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhhcCeeEEecccccccCCHHHHHHhCCCCCCCCCCcchhHHH
Confidence 899999999999997554555566666677777778889999999999999 4 5666554 4445
Q ss_pred c--chHHHHhhcCCCCceEEEecCCCCcHHHHHHHHh------hCCeeEeccccccCCccHHHHHHHHHHHHhhCCCCcE
Q 005679 249 L--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAY------VYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKV 320 (683)
Q Consensus 249 ~--~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~------~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~ki 320 (683)
+ +|+.+-.++++|++.++++++.+ .++.+.|++ .+|+++++.+|||++ +++||.+++..+.+++++.++
T Consensus 326 L~~LLd~~~~~~~L~k~ily~lnp~~--~~~latm~g~fq~~~~~~~~q~G~~WWFnD-~~dGM~r~~e~la~~gl~~nf 402 (463)
T COG1904 326 LKPLLDAFGEDNDLPKTILYLLNPND--NEVLATMAGNFQGEGVSPKLQFGPAWWFND-SKDGMERQREQLASLGLLSNF 402 (463)
T ss_pred HHHHHHhhcccCCCceEEEEecCCch--hHHHHHHHhhccccccCcccccCcchhhcC-ChHHHHHHHHHHHHHHHHHhh
Confidence 4 56666667899999999999986 566799998 789999999999986 489999999999999999999
Q ss_pred E-EecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHH--HHHHHHHHHHHHHHHhc
Q 005679 321 M-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEA--IEVAKDIFALNAAQFYK 379 (683)
Q Consensus 321 l-fgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea--~~~~~~I~~~NA~rly~ 379 (683)
+ |.||+++|++ |++|++|||++|+++++||++|+++.++| ..+...|||+|++.+|.
T Consensus 403 vGmltDsRsflS--y~Rhe~fRRilC~~igr~veeg~~p~dea~~~~~~~~i~y~n~~~~f~ 462 (463)
T COG1904 403 VGMLTDSRSFLS--YTRHEYFRRILCALIGRWVEEGEIPRDEALLGVIVKNICYNNAVDYFA 462 (463)
T ss_pred hcccccchhhhc--ccHHHHHHHHHHHHHHHHHHcCCCCcchHHhhhhhhhcccccHHHHhc
Confidence 9 9999999995 67999999999999999999999999997 67788899999999885
No 7
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=100.00 E-value=2.8e-48 Score=424.25 Aligned_cols=359 Identities=17% Similarity=0.182 Sum_probs=264.9
Q ss_pred HHHHHH-hccCCcccccCCCcccC---C-----------------------CCcchhhccccccCCC--------CCCCC
Q 005679 4 EELREV-VENIELVDGHAHNIVSL---D-----------------------SSFPFIQSFSEATGPA--------LSYAP 48 (683)
Q Consensus 4 ~~l~~~-i~~~p~iD~H~H~~~~~---~-----------------------~~~~~~~~~~ea~~~~--------~~~~~ 48 (683)
.+|++- ++++||||-|||-.-.. + .+.|.+.++++++... +..+-
T Consensus 16 ~~Ly~~~a~~lPIiD~H~HL~p~~i~en~~f~~i~elwl~~DHYkwR~mra~Gv~E~~itg~a~~~ekF~a~a~~~~~~~ 95 (462)
T PF02614_consen 16 RRLYHEYAKDLPIIDYHCHLDPKEIAENRLFGNITELWLYGDHYKWRAMRANGVPEEFITGDASPREKFRAWAETVPRFI 95 (462)
T ss_dssp HHHHHHCCTTS-EEESS-S--HHHHHCTSB-SSHHHHHTSTTHHHHHHHHHTT-HGGGTTCSSSHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHhCCCEeCCCCCCChHHHhhcCCCCCHHHHhccCchhHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhhhhc
Confidence 456665 89999999999965441 1 1235555555433221 11222
Q ss_pred cchhHHHHHHHHHHHhCCCC-----CHHHHHHHHHH-c-ChhhHHHHHHhhCCcEEEEEecCCCCCCCCChHHHhhhcC-
Q 005679 49 YSLSFKRNLKNIAELYGCDS-----SLQAVEEYRRA-A-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP- 120 (683)
Q Consensus 49 ~~l~~~~~~~~l~~~fg~~~-----~~~~i~~~~~~-l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~- 120 (683)
-+--+.|+|++|+++|||++ |+++||+++|+ + ++++++|.|++++||++||| ||||+|+++||+.++.
T Consensus 96 gnp~~~W~hleL~r~FGid~~L~~~~a~~I~d~~n~~l~~~~~~~r~l~~~~nV~~v~T----TDDP~D~L~~H~~l~~~ 171 (462)
T PF02614_consen 96 GNPLYHWTHLELKRYFGIDEPLSEENADEIWDACNEKLATPEFSPRALLRRSNVEVVCT----TDDPLDDLEYHRWLAED 171 (462)
T ss_dssp TSHHHHHHHHHHHHCTT--C-GSHHHHHHHHHHHHHHHTSGGGSHHHHHHHTTEEEEE------B-TTSHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHhcccCcCHHHHHHHCCceEEEe----CCCCCCchHHHHHHhcc
Confidence 23347789999999999996 99999999998 4 89999999999999999999 9999999999999973
Q ss_pred -----------CCCeEEecchHHH-HHHHhhCC--CCCcccHHHHHHHHHHHHHhhcccceeeeeeecc--ccCCCCCCC
Q 005679 121 -----------FVGRILRIERLAE-EILDQASP--DGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH 184 (683)
Q Consensus 121 -----------~~~~i~rie~~~~-~~~~~~~~--~~~~~~~~~~~~al~~~l~~~~~~~vgfksi~~y--~~gl~~~~~ 184 (683)
|||+++.|+...+ +++++++. +.+|.++++|++|+++|+++ |++.||. +||++..++
T Consensus 172 ~~~~~~v~PtfRpD~~l~i~~~~~~~~l~~L~~~~g~~i~~~~~l~~Al~~r~~~-------F~~~G~~~sDh~l~~~~~ 244 (462)
T PF02614_consen 172 ENFDPRVLPTFRPDKALNIDWPGFADYLEKLGEAAGIEISTFEDLLEALRKRRDY-------FKEMGCRASDHGLPDFPF 244 (462)
T ss_dssp CCT-TEEE-EBEGHHHHHTTSTTHHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH-------HHHTT-SEEEEEESS--S
T ss_pred CCCCceEecccCcccccCCChhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHhCCeEeecCCCcccC
Confidence 6888888888766 88888864 55789999999999999995 6666666 588885554
Q ss_pred --CCHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCC------------C-CCCCCCCCCCcc
Q 005679 185 --VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLRLSNPL 249 (683)
Q Consensus 185 --~~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~l~e~a~e~glpvq~H~G~------------G-d~~~~~~~~~p~ 249 (683)
++.++++++|.|+++++..+..+...+..+++..+.++|+|+|||||+|.|+ | |.|.|.....+.
T Consensus 245 ~~~~~~e~~~if~k~~~g~~ls~~e~~~~~~~ll~~l~~~~~e~g~vmQlHiGa~Rn~n~~~~~~lG~D~G~D~~~~~~~ 324 (462)
T PF02614_consen 245 PPPSEEEAERIFKKALAGESLSAEEIDKFRTYLLWELAKMYAERGWVMQLHIGALRNNNSRMFPRLGPDTGFDSIGDFPD 324 (462)
T ss_dssp S---HHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE-EETTSSHHHHHHTGSSSSG-EE-S--H
T ss_pred CCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCcccCCCHHHHHHhCCCCCCCCCCchHH
Confidence 6899999999999987666666777888899999999999999999999998 3 345543322121
Q ss_pred --chHHHHh----hcCCCCceEEEecCCCCcHHHHHHHHhhCC-----eeEeccccccCCccHHHHHHHHHHHHhhCCCC
Q 005679 250 --HLRAILE----DKRFSKCRFVLLHASYPFSKEASYLAYVYP-----QVYLDFGLAIPKLSVQGMISSIKELLELAPTK 318 (683)
Q Consensus 250 --~L~~l~~----~~~~P~l~~vl~H~g~p~~~e~~~la~~~p-----nVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~ 318 (683)
.|..++. .+++|++.++.+++. +..+++.+|++|| |||++.+|||++. ++||+++++.+.+.++..
T Consensus 325 ~~~L~~ll~~~~~~~~lpk~ily~Ln~~--~~~~la~lag~F~~~~~~~vq~G~~WWF~D~-~~gm~~q~~~~~~~~ll~ 401 (462)
T PF02614_consen 325 AEALSRLLDRFDNNGKLPKTILYSLNPT--DNHELATLAGNFQDGGIPKVQLGGAWWFNDT-PDGMERQMTALAEMGLLS 401 (462)
T ss_dssp HHHHHHHHHHHTTTTT-SEEEEEESSGG--GHHHHHHHHHHST-TTSTTEEEB---GGG-S-HHHHHHHHHHHHHHCHGC
T ss_pred HHHHHHHHHhccccCCCceeEEEecChh--hHHHHHHHHhhcCCcCcceeeecCcccccCC-HHHHHHHHHHHHHHhCcc
Confidence 3444444 456677777777775 6788999999999 9999999999875 889999999999999999
Q ss_pred cEE-EecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHH--HHHHHHHHHHHHHHHh
Q 005679 319 KVM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEA--IEVAKDIFALNAAQFY 378 (683)
Q Consensus 319 kil-fgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea--~~~~~~I~~~NA~rly 378 (683)
|++ |.||+|+|.+ |++|++|||+||++|++||++|+++.+++ ++++++|||+||+++|
T Consensus 402 ~fvGmltDsRsflS--~~RheyfRRilc~~lg~~ve~g~~p~d~~~l~~~v~di~y~na~~yf 462 (462)
T PF02614_consen 402 NFVGMLTDSRSFLS--YPRHEYFRRILCNVLGEWVEEGEWPEDEAFLGRIVEDICYNNAKRYF 462 (462)
T ss_dssp GCB------SCTTH--HHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTHHHHHHC
T ss_pred ceeceecchHHHhh--hhHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhHHHhC
Confidence 999 9999999995 58999999999999999999999999986 5999999999999986
No 8
>PLN02284 glutamine synthetase
Probab=100.00 E-value=6e-47 Score=405.94 Aligned_cols=254 Identities=20% Similarity=0.227 Sum_probs=209.4
Q ss_pred EEEEEEecCCCCceeEEEechhhhHHHhhcCccccccccccccccCCCCCCCCCCCCccEEEEeecCCceeccCCC-Ccc
Q 005679 410 LIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK-QEE 488 (683)
Q Consensus 410 ~V~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~l~PD~~Tl~~~pw~~-~~a 488 (683)
+|+++|+|+.|..|...+|.+.+++. .|++|++++.++.. .+.+|++|+|| |++++||.+ +++
T Consensus 25 wi~~~~~dl~g~~~~~~~~~~~~~~~---~~~~fdGssi~~~~-----------~~~sD~~l~PD--t~~~~Pw~~~~~~ 88 (354)
T PLN02284 25 WIGGSGMDLRSKARTLPGPVTDPSKL---PKWNYDGSSTGQAP-----------GEDSEVILYPQ--AIFKDPFRGGNNI 88 (354)
T ss_pred EEEEEecCCCCceEEecccccccccC---CceeecCCCCCCcc-----------CCCceEEEEcc--EEEECCCCCCCeE
Confidence 35788999999999999999988764 79999988864311 24679999999 999999965 579
Q ss_pred eEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCCeeeeeeeeEEEEEeeccc--CCCC-CcccCCCCCcccCCcc--cc
Q 005679 489 MIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGKE-EWVPIDFTPYCSTAAY--DA 563 (683)
Q Consensus 489 ~v~~d~~~~~g~p~~~cPR~~L~r~~~~~~~~~G~~~~~g~E~EF~l~~~~~~--~~~~-~~~p~~~~~~~~~~~~--~~ 563 (683)
+|+||++++||+|++.|||++|+|++++++ +.|+++.+|+|+|||||+...+ .|.. +..|.+.++||+..+. ..
T Consensus 89 ~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~-~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~ 167 (354)
T PLN02284 89 LVMCDAYTPAGEPIPTNKRAKAAKIFSHPD-VAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAF 167 (354)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHH-hcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccCcchhhHH
Confidence 999999999999999999999999999998 4799999999999999985211 1110 1145566777765543 33
Q ss_pred hHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeecccC---C--C
Q 005679 564 VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPNLWQ---N--G 638 (683)
Q Consensus 564 ~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpKl~~---~--g 638 (683)
..+++++++++|+++||+|+++|||+|||||||++.|.++|+|||+++++|++||+||++||+.||||||+.. + |
T Consensus 168 ~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~~~~GSG 247 (354)
T PLN02284 168 GRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPGDWNGAG 247 (354)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCCCCccCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999742 3 3
Q ss_pred CcccccCCCCCCCCCcHHHHHHHHHH-HHHHHHhHhhhcCCCCCCC
Q 005679 639 ENVFMASDSSSKHGMSSVGEKFMAGV-LHHLSSILAFTAPVPNRLL 683 (683)
Q Consensus 639 ~N~f~~~~~~~~~~lS~~~~~fiaGi-L~h~~al~a~~~Pt~NSY~ 683 (683)
-+++.+.-+....+-+...+++++|+ |+|+++|+||++ |||+
T Consensus 248 mH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~---NSYk 290 (354)
T PLN02284 248 AHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGE---GNER 290 (354)
T ss_pred ceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhc---CcHh
Confidence 35555432110112356678999999 999999999997 9996
No 9
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=4.2e-43 Score=380.63 Aligned_cols=254 Identities=21% Similarity=0.286 Sum_probs=201.7
Q ss_pred EEEEEEecCCC-CceeEEE----echhhhHHHhhcCccccccccccccccCCCCCCCCCCCCccEEEEeecCCceeccCC
Q 005679 410 LIRVIWVDASG-QHRCRVV----PVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQ 484 (683)
Q Consensus 410 ~V~~~~~D~~G-~~R~k~v----p~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~l~PD~~Tl~~~pw~ 484 (683)
.+...|+|.+| -+|||.- |.+.+++. .|++|++++.+.. + .+.+|++|+|| |++++||.
T Consensus 80 ~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~---~~w~fDGSs~g~a-------~----~~~sD~~l~PD--Tl~~~Pw~ 143 (432)
T PLN03036 80 IAEYIWIGGSGIDLRSKSRTISKPVEHPSEL---PKWNYDGSSTGQA-------P----GEDSEVILYPQ--AIFKDPFR 143 (432)
T ss_pred EEEEEEeCCCCCCCCCCeEEeCccccccccC---CceeeecCccCCC-------c----CCCCCEEEEcc--EEEECCcC
Confidence 56666777777 4665554 44555442 6888888876421 1 25689999999 99999996
Q ss_pred C-CcceEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCCeeeeeeeeEEEEEeeccc--CCC-CCcccCCCCCcccCCc
Q 005679 485 K-QEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGK-EEWVPIDFTPYCSTAA 560 (683)
Q Consensus 485 ~-~~a~v~~d~~~~~g~p~~~cPR~~L~r~~~~~~~~~G~~~~~g~E~EF~l~~~~~~--~~~-~~~~p~~~~~~~~~~~ 560 (683)
+ ++++|+||++++||+|++.|||++|++++++++ ..|+++.+|+|+|||||+.... .|. ....|.+.++||...+
T Consensus 144 ~~~~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~-~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~ 222 (432)
T PLN03036 144 GGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKK-VVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAG 222 (432)
T ss_pred CCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHhc-ccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCch
Confidence 5 579999999999999999999999999999987 5699999999999999985211 121 1234556677776665
Q ss_pred ccc--hHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeecccC--
Q 005679 561 YDA--VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPNLWQ-- 636 (683)
Q Consensus 561 ~~~--~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpKl~~-- 636 (683)
.+. .++++++++++|+.+||+|+++|+|+|||||||++.|+++|+|||+++++|++||+||++||+.||||||+..
T Consensus 223 ~d~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd 302 (432)
T PLN03036 223 ADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGD 302 (432)
T ss_pred hhhhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCC
Confidence 554 5899999999999999999999999999999999999999999999999999999999999999999999642
Q ss_pred -C--CCcccccCCCCCCCCCcHHHHHHHHH-HHHHHHHhHhhhcCCCCCCC
Q 005679 637 -N--GENVFMASDSSSKHGMSSVGEKFMAG-VLHHLSSILAFTAPVPNRLL 683 (683)
Q Consensus 637 -~--g~N~f~~~~~~~~~~lS~~~~~fiaG-iL~h~~al~a~~~Pt~NSY~ 683 (683)
+ |-+++++.-+....+.-...+++++| +|+|+++|+|+++ |||+
T Consensus 303 ~~GSGmHiH~Sl~d~r~~gg~~~~~~~i~gl~l~H~~~i~A~~~---Nsyk 350 (432)
T PLN03036 303 WNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGE---GNER 350 (432)
T ss_pred cCCCCceeEechhhccccchHHHHHHHHhhHHHHHHHHHHhhhc---Chhh
Confidence 3 34555543211011123456788888 9999999999999 9996
No 10
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=3.6e-43 Score=364.03 Aligned_cols=178 Identities=41% Similarity=0.716 Sum_probs=153.4
Q ss_pred CCChHHHHHHHHHHHHHhcCCeeeeeeeeEEEEEeecccCCCC--Cccc----CCCCCcccCCcccchHHHHHHHHHHHH
Q 005679 503 EYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE--EWVP----IDFTPYCSTAAYDAVSPVFQEVLADLH 576 (683)
Q Consensus 503 ~~cPR~~L~r~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~--~~~p----~~~~~~~~~~~~~~~~~~~~ei~~~l~ 576 (683)
+.|||++|||++++++ +.|+++++|+|+|||||++....+.. ...+ ....++|+..+.+...+++++|++.|+
T Consensus 1 ~~~PR~~Lkr~~~~~~-~~g~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 79 (259)
T PF00120_consen 1 EACPRSILKRVLERLE-EMGLSFKVGFELEFYLFDRDDDGGWPRPSGYPDEPGQDYGGYYSLSPLDAGEDFLEEIVDALE 79 (259)
T ss_dssp -T-HHHHHHHHHHHHH-HTCCEEEEEEEEEEEEESTCEETTSSSTTSEESESSSTTTBSSTTTTTSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HhCCceEEEEeEEEEEeccCcccccccccccccccccccCCcCCCchhhHHHHHHHHHHHHHH
Confidence 4799999999999998 58999999999999999974322221 1112 134677888888899999999999999
Q ss_pred hCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeec---------------ccC--CCC
Q 005679 577 SLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN---------------LWQ--NGE 639 (683)
Q Consensus 577 ~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpK---------------l~~--~g~ 639 (683)
++||+||++|+|+|||||||++.|.++|+|||+++++|++||+||++||++|||||| +|+ +|+
T Consensus 80 ~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~~GsG~H~h~Sl~~~~~g~ 159 (259)
T PF00120_consen 80 QAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGDNGSGMHLHISLWDAKDGK 159 (259)
T ss_dssp HCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTSS--BEEEEEEECHHHTTE
T ss_pred HhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCcCccchhhhhhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999 675 899
Q ss_pred cccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhcCCCCCCC
Q 005679 640 NVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNRLL 683 (683)
Q Consensus 640 N~f~~~~~~~~~~lS~~~~~fiaGiL~h~~al~a~~~Pt~NSY~ 683 (683)
|+|.+ ++++.+||+.+++||||||+|+|++++|++||+|||+
T Consensus 160 n~f~~--~~~~~~ls~~~~~flaGll~h~~~l~a~~~pt~nsyk 201 (259)
T PF00120_consen 160 NLFYD--PDGPAGLSELARHFLAGLLKHAPALTAFTAPTVNSYK 201 (259)
T ss_dssp ETTBS--TTSHGHHHHHHHHHHHHHHCHHHHHHHCHSTSTTHHH
T ss_pred ccccc--ccccccccHHHHHHHHHHHHHHHHHHhhhCccCcchh
Confidence 99994 4444679999999999999999999999999999995
No 11
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.89 E-value=4e-22 Score=209.47 Aligned_cols=153 Identities=31% Similarity=0.409 Sum_probs=125.7
Q ss_pred cCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCC--CCccchHHHHhhcCCCCceEEEecCC--CCcHHHHHHH
Q 005679 206 ITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRL--SNPLHLRAILEDKRFSKCRFVLLHAS--YPFSKEASYL 281 (683)
Q Consensus 206 ~~~~~l~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~--~~p~~L~~l~~~~~~P~l~~vl~H~g--~p~~~e~~~l 281 (683)
......++..++|+|+.|+++|+||++|+|.++.+..... ++|+.++++++ +||+++||++|+| +||..++.++
T Consensus 136 ~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~--~fP~l~IVl~H~G~~~p~~~~a~~~ 213 (293)
T COG2159 136 AQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVAR--KFPELKIVLGHMGEDYPWELEAIEL 213 (293)
T ss_pred ccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHH--HCCCCcEEEEecCCCCchhHHHHHH
Confidence 3445556667999999999999999999999876666655 89999999999 7999999999999 9999999999
Q ss_pred HhhCCeeEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhH
Q 005679 282 AYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGE 361 (683)
Q Consensus 282 a~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~e 361 (683)
+..+||||+|+|.+.+.+.. ...++.+.+ .+.+||||||| +|... ...+.+... .++.++
T Consensus 214 a~~~~nvy~d~s~~~~~~~~---~~~~~~~~~-~~~dkilFGSD---~P~~~--~~~~l~~~~-----------~l~l~~ 273 (293)
T COG2159 214 AYAHPNVYLDTSGVRPKYFA---PPLLEFLKE-LGPDKILFGSD---YPAIH--PEVWLAELD-----------ELGLSE 273 (293)
T ss_pred HHhCCCceeeeeccccccCC---hHHHHHHHh-cccCeEEecCC---CCCcC--HHHHHHHHH-----------hcCCCH
Confidence 99999999999999775532 257888888 88899999999 78542 223333322 344555
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 005679 362 AIEVAKDIFALNAAQFYKINL 382 (683)
Q Consensus 362 a~~~~~~I~~~NA~rly~l~~ 382 (683)
+.+++|+++||+|||+++.
T Consensus 274 --e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 274 --EVKEKILGENAARLLGLDP 292 (293)
T ss_pred --HHHHHHHHHhHHHHhCcCC
Confidence 8899999999999999964
No 12
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=99.83 E-value=2.4e-20 Score=191.73 Aligned_cols=253 Identities=20% Similarity=0.255 Sum_probs=186.3
Q ss_pred hhhccCCceEEEEEEecCCC-CceeEEEechhhhHHHhhc-CccccccccccccccCCCCCCCCCCCCccEEEEeecCCc
Q 005679 401 SDAFESDVSLIRVIWVDASG-QHRCRVVPVKRFNDIVTKY-GVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTR 478 (683)
Q Consensus 401 ~~~~~~~i~~V~~~~~D~~G-~~R~k~vp~~~~~~~~~~~-g~~~~~~~~~~~~~~d~~~~~~~~~~~gd~~l~PD~~Tl 478 (683)
.+-..++--.+.+.|+|-+| .+|+|+-....-.+.+.+. -..+++++ ++.+. +..+|.+|+|. .+
T Consensus 22 ~L~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgss-------t~QA~----g~nSd~~l~Pv--a~ 88 (380)
T KOG0683|consen 22 YLRAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSS-------TGQAP----GENSDVYLRPV--AI 88 (380)
T ss_pred cccccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCcc-------ccccc----CCCCceEEeeh--hh
Confidence 34455566678889999999 8888887765443332111 11222222 11122 23579999998 78
Q ss_pred eeccCCCC-cceEEEEeecCCCCcCCCChHHHHHHHHHHHHHhcCCeeeeeeeeEEEEEeecccCCCCCc----ccCCCC
Q 005679 479 WRIPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEW----VPIDFT 553 (683)
Q Consensus 479 ~~~pw~~~-~a~v~~d~~~~~g~p~~~cPR~~L~r~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~----~p~~~~ 553 (683)
.+.|+..+ ...|+|+.++.+|.|.+..-|....+++.... -..-+|.+|.|.|+.+++.. ...+=+| .|...+
T Consensus 89 ~~dPfr~g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~-~~~~~PWfg~Eqeyt~l~~~-~~~p~gwp~~GFp~Pqg 166 (380)
T KOG0683|consen 89 YPDPFRNGNNILVMCDTYDFDGKPTETNKRVACARIMPKLS-TKDTEPWFGMEQEYTLLDAL-DGHPFGWPKGGFPGPQG 166 (380)
T ss_pred cCCcccCCCCEEEEeeccCCCCCcccccchhhHHHHhcccc-ccccCCchhhhHHHhhhccc-cCCcccCCccCCCCCCC
Confidence 88999875 57899999999999999999999999999885 23568999999999999872 1111112 245566
Q ss_pred CcccCCcccc--hHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEee
Q 005679 554 PYCSTAAYDA--VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFV 631 (683)
Q Consensus 554 ~~~~~~~~~~--~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFm 631 (683)
+||...+.++ ..++.+.-+.++--.||.+..++.|+.||||||.+.|+.++.++|+++.+|+++++||+++|+.|||.
T Consensus 167 pyyc~VGad~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~ 246 (380)
T KOG0683|consen 167 PYYCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFD 246 (380)
T ss_pred CceeeccccccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEec
Confidence 7776544443 35777877888888899999999999999999999999999999999999999999999999999999
Q ss_pred ec----ccCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhcCCCCCC
Q 005679 632 PN----LWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNRL 682 (683)
Q Consensus 632 pK----l~~~g~N~f~~~~~~~~~~lS~~~~~fiaGiL~h~~al~a~~~Pt~NSY 682 (683)
|| +|++ . +-+..+.++.-+.+ |.+++....+|.+++|
T Consensus 247 pKp~~g~Wng-----a-----G~Htn~ST~~mr~~----~g~~~i~~a~~~ls~r 287 (380)
T KOG0683|consen 247 PKPILGDWNG-----A-----GCHTNFSTKEMREA----GGLKIIEEAIPKLSKR 287 (380)
T ss_pred CCCCCCcccC-----c-----ccccccchhHHHhc----cCHHHHHHHhhhcchh
Confidence 99 6653 1 12235556677777 5556666666666654
No 13
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=99.74 E-value=1.2e-18 Score=180.84 Aligned_cols=147 Identities=29% Similarity=0.377 Sum_probs=103.7
Q ss_pred HHHHHHHhhCCCcEEEecC-CCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCC--cHHHHHHHHhhCCeeEeccc
Q 005679 217 ISSLEVAQFLDLPLQIHTG-FGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP--FSKEASYLAYVYPQVYLDFG 293 (683)
Q Consensus 217 ~~l~e~a~e~glpvq~H~G-~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p--~~~e~~~la~~~pnVy~d~s 293 (683)
.++|+.|+|+|+||.+|+| .+..+......+|..+..+++ +||+++||+.|+|.+ +..++..++.++||||+|+|
T Consensus 120 ~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~--~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s 197 (273)
T PF04909_consen 120 DPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLE--RFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLS 197 (273)
T ss_dssp HHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHH--HSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECH
T ss_pred HHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHH--HhcCCeEEEecCcccchhHHHHHHHHHhCCccccccc
Confidence 4899999999999999988 221111223456778888998 899999999999999 88899999999999999999
Q ss_pred cccCC---ccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhH-HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 005679 294 LAIPK---LSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGA-KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (683)
Q Consensus 294 ~~~~~---~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~-~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (683)
+..+. .........+..+++..+.+||||||| +|....... ..+... .... .+ ++ +..++|
T Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~g~drilfGSD---~P~~~~~~~~~~~~~~---~~~~-----~l--~~--~~~~~i 262 (273)
T PF04909_consen 198 GIPPFWYFWPPSFDRPFLRRAVDEFGPDRILFGSD---YPHPDGASPYEYIWEA---YFLD-----DL--SE--EEREKI 262 (273)
T ss_dssp SHHSSEEEETTHHCHHHHHHHHHHHTGGGEEEE-----TTSSTHHHHHHHHHHH---HHHH-----HS--SH--HHHHHH
T ss_pred ccccccccCcccccHHHHHHHHHHhCCceEEecCC---CCCCCccccHHHHHHh---hhcc-----CC--CH--HHHHHH
Confidence 96421 112233457888888888899999999 553322111 112111 1000 03 34 779999
Q ss_pred HHHHHHHHhcC
Q 005679 370 FALNAAQFYKI 380 (683)
Q Consensus 370 ~~~NA~rly~l 380 (683)
+++||+|+|+|
T Consensus 263 ~~~NA~rl~~l 273 (273)
T PF04909_consen 263 LYDNARRLYGL 273 (273)
T ss_dssp HTHHHHHHHTC
T ss_pred HhHhHHHHcCc
Confidence 99999999986
No 14
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.39 E-value=7.6e-13 Score=112.95 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=65.0
Q ss_pred CceEEEEEEecCCCCceeEEEechhhhHHHhhcCcccccccc-ccccccCCCCCCCCCCCCccEEEEeecCCceeccCCC
Q 005679 407 DVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACM-GMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK 485 (683)
Q Consensus 407 ~i~~V~~~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~~~~~~~~~gd~~l~PD~~Tl~~~pw~~ 485 (683)
+|+||+++|+|+.|.+|.+.+|++++.+.+.+.|++|++|+. ++.. ...+|++|+||++|++++||.+
T Consensus 1 ~V~~v~~~f~D~~G~~~~~~i~~~~~~~~~~~~g~~fDGSSi~g~~~-----------~~~SDm~l~Pd~~t~~~~P~~~ 69 (84)
T PF03951_consen 1 NVKFVDLQFTDLFGRLKHVTIPASEFDEDALEDGIGFDGSSIRGFAT-----------IEESDMYLKPDPSTFFIDPWRP 69 (84)
T ss_dssp T-EEEEEEEE-TTSSEEEEEEEGCCESCSGGGS-EEEECCGTTTSSB-----------SCCEEEEEEEEGGEEEESTTTS
T ss_pred CeEEEEEEEEcCCCCcceEEEEHHHCCchHhhCCCCCCcccCcCccc-----------CCCCCEEEecCcccEEECccCC
Confidence 589999999999999999999999993334578999999887 4431 1347999999999999999996
Q ss_pred C---cceEEEEeecC
Q 005679 486 Q---EEMIMADMHLK 497 (683)
Q Consensus 486 ~---~a~v~~d~~~~ 497 (683)
+ +++|+||++++
T Consensus 70 ~~~~~~~v~cdv~~P 84 (84)
T PF03951_consen 70 DPGKTARVICDVYDP 84 (84)
T ss_dssp TT-TEEEEEEEEEST
T ss_pred CCceEEEEEEEeECc
Confidence 4 69999999974
No 15
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=99.38 E-value=2.6e-12 Score=133.90 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCc---------HHHHHHHHhh
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF---------SKEASYLAYV 284 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~---------~~e~~~la~~ 284 (683)
..+.++++.|+++|+|+++|+|... ...+..+++ +| +++||+.|+|.|+ ..+...++ .
T Consensus 110 ~~~~~~~~~~~~~gl~v~~~~~~~~---------l~~l~~l~~--~~-~l~ivldH~G~p~~~~~~~~~~~~~~l~~l-~ 176 (263)
T cd01311 110 DELDEIAKRAAELGWHVQVYFDAVD---------LPALLPFLQ--KL-PVAVVIDHFGRPDVTKGVDGAEFAALLKLI-E 176 (263)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCHhh---------HHHHHHHHH--HC-CCCEEEECCCCCCCCCCCCCHhHHHHHHHH-h
Confidence 3456789999999999999997531 124677888 78 9999999999765 23445556 8
Q ss_pred CCeeEeccccccCC----ccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhh---hHHHHHHHHHHHHHhhhhcCCC
Q 005679 285 YPQVYLDFGLAIPK----LSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL---GAKRAREVVFSVLRDTCIDEDL 357 (683)
Q Consensus 285 ~pnVy~d~s~~~~~----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~---~~~~~r~~l~~~l~~~v~~g~l 357 (683)
+||||+|+|++... .....+...++.+++. +.+|+||||| ||.+... ........+.. +.+ .+
T Consensus 177 ~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~-g~dRlmfGSD---~P~~~~~~~~~~~~~~~~~~~-~~~-----~~ 246 (263)
T cd01311 177 EGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAA-APDRLVWGTD---WPHPRLREPDPMPDDGALLRL-IPS-----WA 246 (263)
T ss_pred cCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHh-CCCcEEEeCC---CCCCCccccCCCCCHHHHHHH-HHH-----Hc
Confidence 99999999986421 1134566788888877 7899999999 6653211 00111112211 111 12
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q 005679 358 SVGEAIEVAKDIFALNAAQF 377 (683)
Q Consensus 358 ~~~ea~~~~~~I~~~NA~rl 377 (683)
+ ++ +.+++|+++|++||
T Consensus 247 ~-~~--~~~~~~~~~n~~~~ 263 (263)
T cd01311 247 P-DA--QLQRKNLVDNPARL 263 (263)
T ss_pred C-CH--HHHHHHHHhChhhC
Confidence 2 23 66999999999985
No 16
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.21 E-value=1.8e-10 Score=117.55 Aligned_cols=139 Identities=20% Similarity=0.266 Sum_probs=96.3
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCC---------cHHHHHHHHhhCC
Q 005679 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP---------FSKEASYLAYVYP 286 (683)
Q Consensus 216 ~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p---------~~~e~~~la~~~p 286 (683)
+...++....+||++.+++-.- ..|. +-.++. .+|+++||+-|+|.| |...+..|+ ..|
T Consensus 126 ~r~~~~rL~~~gl~fdl~~~~~--------ql~~-~i~l~~--~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la-~~p 193 (279)
T COG3618 126 WRANVERLAKLGLHFDLQVDPH--------QLPD-LIPLAL--KAPDVNFVLDHCGRPDIKINLEDPWKAALARLA-RRP 193 (279)
T ss_pred HHHHHHHHHhcCCeEEEEeChh--------hhHH-HHHHHh--hCCCCCEEeccCCCCCccccccCHHHHHHHHHH-hCC
Confidence 3445677789999999998421 1222 333444 699999999999976 333444444 789
Q ss_pred eeEeccccccCCc----cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhH-HHHHHHHHHHHHhhhhcCCCChhH
Q 005679 287 QVYLDFGLAIPKL----SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGA-KRAREVVFSVLRDTCIDEDLSVGE 361 (683)
Q Consensus 287 nVy~d~s~~~~~~----~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~-~~~r~~l~~~l~~~v~~g~l~~~e 361 (683)
|||+.+|+..-+. .....+.+.+.+++..|.+|+||||| ||-+.+.+. .-+ ...+.++|.. +.
T Consensus 194 Nv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSd---wPv~~l~~~~~~~----~~~~~~~v~~-----~~ 261 (279)
T COG3618 194 NVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSD---WPVTSLESDFASW----VAATRELVPG-----DA 261 (279)
T ss_pred CeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceEecCC---CCcccccCChHHH----HHHHHHHcCC-----CH
Confidence 9999999965322 24456779999999999999999999 887654331 112 1223333321 23
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 005679 362 AIEVAKDIFALNAAQFYKI 380 (683)
Q Consensus 362 a~~~~~~I~~~NA~rly~l 380 (683)
+..++||++||+|+|++
T Consensus 262 --~er~~i~~~NA~rly~~ 278 (279)
T COG3618 262 --AERARILVDNARRLYRL 278 (279)
T ss_pred --HHHHHHHhhCHHHHhCC
Confidence 66999999999999987
No 17
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=99.07 E-value=7.2e-10 Score=114.02 Aligned_cols=147 Identities=21% Similarity=0.271 Sum_probs=91.9
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCC-CceEEEecCCCCcHHHHHHHHhhCCee
Q 005679 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFS-KCRFVLLHASYPFSKEASYLAYVYPQV 288 (683)
Q Consensus 210 ~l~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P-~l~~vl~H~g~p~~~e~~~la~~~pnV 288 (683)
..++..+.+++++|+++|+||++|++.+ |..+.++++ +|| ..++++ |++......+..++. +|+
T Consensus 104 ~~q~~~~~~~~~~a~e~~~pv~iH~~~~----------~~~~~~l~~--~~~~~~~~i~-H~~~~~~~~~~~~~~--~g~ 168 (251)
T cd01310 104 EVQKEVFRAQLELAKELNLPVVIHSRDA----------HEDVLEILK--EYGPPKRGVF-HCFSGSAEEAKELLD--LGF 168 (251)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeCc----------hHHHHHHHH--hcCCCCCEEE-EccCCCHHHHHHHHH--cCC
Confidence 3455677888999999999999999842 455777888 687 555555 653333334444443 899
Q ss_pred EeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHH
Q 005679 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (683)
Q Consensus 289 y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (683)
|+++|.+..... ...++.+++..+.+||||+||+++.+...+.+.......+.+++..+.+...++. +.+.+
T Consensus 169 ~~~~~~~~~~~~----~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~gl~~----e~~~~ 240 (251)
T cd01310 169 YISISGIVTFKN----ANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISV----EEVAE 240 (251)
T ss_pred EEEeeeeeccCC----CHHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHCcCH----HHHHH
Confidence 999998763221 1256777888999999999996544321000000000111122222222224543 66999
Q ss_pred HHHHHHHHHhc
Q 005679 369 IFALNAAQFYK 379 (683)
Q Consensus 369 I~~~NA~rly~ 379 (683)
|+++||+|+|+
T Consensus 241 ~~~~N~~~ll~ 251 (251)
T cd01310 241 VTTENAKRLFG 251 (251)
T ss_pred HHHHHHHHHhC
Confidence 99999999986
No 18
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.04 E-value=3.2e-09 Score=112.01 Aligned_cols=111 Identities=28% Similarity=0.391 Sum_probs=91.5
Q ss_pred eeeeeeeeEEEEEeecccCCCCCc---------ccCCCC-----CcccCCcccchHHHHHHHHHHHHhCCCceeEeeccC
Q 005679 524 VLNAGFEIEFYLLKSVLREGKEEW---------VPIDFT-----PYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEA 589 (683)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~---------~p~~~~-----~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~ 589 (683)
-..+|.|.|+||+++...+.++++ .|..++ |||...+ .+++.|+.++-..|.+.||++..-|.|+
T Consensus 215 ~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaip-eRV~~FM~Dve~~LyaLGIpaKTrHNEV 293 (724)
T COG3968 215 FSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIP-ERVSAFMKDVEKELYALGIPAKTRHNEV 293 (724)
T ss_pred ccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccH-HHHHHHHHHHHHHHHHcCCccccccccc
Confidence 478999999999986422222111 112222 5665444 5788999999999999999999999999
Q ss_pred CCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeeccc
Q 005679 590 GKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPNLW 635 (683)
Q Consensus 590 ~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpKl~ 635 (683)
+||||||..-+.++--|+|+-.+..+++|.+|+|||+..-.+-|++
T Consensus 294 APgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPF 339 (724)
T COG3968 294 APGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPF 339 (724)
T ss_pred CCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCc
Confidence 9999999999999999999999999999999999999999999944
No 19
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.66 E-value=1.2e-07 Score=97.60 Aligned_cols=143 Identities=19% Similarity=0.208 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEec
Q 005679 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (683)
Q Consensus 212 ~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d 291 (683)
+...+...++.|+++|+||.+|++.. +..+.++++ ++|....++.|+.......+..+.. .|+|++
T Consensus 106 q~~~~~~~~~~a~~~~~pv~iH~~~~----------~~~~~~~l~--~~~~~~~~i~H~~~~~~~~~~~~~~--~g~~~~ 171 (252)
T TIGR00010 106 QEEVFRAQLQLAEELNLPVIIHARDA----------EEDVLDILR--EEKPKVGGVLHCFTGDAELAKKLLD--LGFYIS 171 (252)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecCc----------cHHHHHHHH--hcCCCCCEEEEccCCCHHHHHHHHH--CCCeEe
Confidence 33466677899999999999999732 233456666 4643445555873211222333332 499999
Q ss_pred cccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhh----hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHH
Q 005679 292 FGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL----GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (683)
Q Consensus 292 ~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~----~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~ 367 (683)
++.+..... ...+++++...|.+|+||+||+++.+...+. .....++.+ +.+... ..++. +.+.
T Consensus 172 ~~~~~~~~~----~~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~-~~~a~~---~g~~~----~~~~ 239 (252)
T TIGR00010 172 ISGIVTFKN----AKSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTV-EAIAEI---KGMDV----EELA 239 (252)
T ss_pred eceeEecCC----cHHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHH-HHHHHH---hCcCH----HHHH
Confidence 998643221 1256666777889999999997543200000 001122211 111111 13443 6699
Q ss_pred HHHHHHHHHHhcC
Q 005679 368 DIFALNAAQFYKI 380 (683)
Q Consensus 368 ~I~~~NA~rly~l 380 (683)
+++++|++|+|++
T Consensus 240 ~~~~~N~~~~~~~ 252 (252)
T TIGR00010 240 QITTKNAKRLFGL 252 (252)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999985
No 20
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=97.98 E-value=9.4e-06 Score=77.97 Aligned_cols=184 Identities=20% Similarity=0.269 Sum_probs=114.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhc------CCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCC-----C--CCCC-C
Q 005679 177 SGLEINPHVTKKDAEEGLAEDLRS------GKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF-----G--DKDL-D 242 (683)
Q Consensus 177 ~gl~~~~~~~~~ea~~~~~~~l~~------~~~~~~~~~~l~d~~~~~l~e~a~e~glpvq~H~G~-----G--d~~~-~ 242 (683)
.||...|.-.++.|....+|..+. +.++++..+.|+..-+||+|..|+++...+.+|... | +..+ .
T Consensus 68 v~lgtlpmn~~e~avee~~rcvk~lg~~g~eigshv~e~~ld~~d~~ply~~~e~l~~~lfvhpwdmhmwdgrl~kywlp 147 (297)
T KOG4245|consen 68 VGLGTLPMNAPELAVEEMERCVKELGFKGFEIGSHVAEKDLDAQDFFPLYAAAEELKCSLFVHPWDMHMWDGRLAKYWLP 147 (297)
T ss_pred cccCccCCcCHHHHHHHHHHHHHHcCCCceeeccccccccCchHHHhHHHHHHHhheeeEEecchhhcccccchHhhhhH
Confidence 556666654556666666666642 136788899999999999999999999999998743 1 1110 0
Q ss_pred CCCCCcc---------chHHHHhhcCCCCceEEEecCC--CCcHHHHHHHH--------------hhCCeeEeccccccC
Q 005679 243 LRLSNPL---------HLRAILEDKRFSKCRFVLLHAS--YPFSKEASYLA--------------YVYPQVYLDFGLAIP 297 (683)
Q Consensus 243 ~~~~~p~---------~L~~l~~~~~~P~l~~vl~H~g--~p~~~e~~~la--------------~~~pnVy~d~s~~~~ 297 (683)
.-...|. .+..++. .||++++.++|.| +|+.+ +.+. ..-||-|.++-|.-.
T Consensus 148 wlvgmpaeta~aics~img~i~~--~fpklklcfahggga~p~~~--grishg~n~rpdlca~~~~~~p~k~~g~~~tda 223 (297)
T KOG4245|consen 148 WLVGMPAETAIAICSMIMGGIFE--KFPKLKLCFAHGGGAFPFIR--GRISHGFNMRPDLCAGDCKMAPKKLDGLFWTDA 223 (297)
T ss_pred HHhCCchHHHHHHHHHHHhhHHH--hCchheeeeecCCcccceee--eeeccCccCCcchhcCcCCCChhhhccchhhhh
Confidence 1112232 3556777 7999999999996 67664 2221 122455554433211
Q ss_pred CccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHH
Q 005679 298 KLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (683)
Q Consensus 298 ~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rl 377 (683)
.. .-...++-+++..|-++|+.||| |+||- +...- .+++.++ .+.+ + +.++++.++||..+
T Consensus 224 lv---hdp~alell~~tigkd~iilgtd-ypfpl----gele~----gkliee~---~~f~--a--~~ke~l~~~nal~~ 284 (297)
T KOG4245|consen 224 LV---HDPKALELLIDTIGKDHIILGTD-YPFPL----GELEP----GKLIEEM---EEFD--A--EDKEDLKAGNALAF 284 (297)
T ss_pred hh---cCcHHHHHHHHhhccceEEeccC-CCCcC----ccccc----chHHHhh---cccc--h--hhHHHhhhccchhh
Confidence 11 11236777788999999999999 33552 22111 1122222 2233 2 66999999999999
Q ss_pred hcCCCC
Q 005679 378 YKINLG 383 (683)
Q Consensus 378 y~l~~~ 383 (683)
++++..
T Consensus 285 l~id~n 290 (297)
T KOG4245|consen 285 LDIDEN 290 (297)
T ss_pred cccchh
Confidence 998753
No 21
>PRK10812 putative DNAse; Provisional
Probab=97.95 E-value=8.3e-05 Score=77.59 Aligned_cols=142 Identities=20% Similarity=0.263 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEecccc
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGL 294 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~s~ 294 (683)
.+...+++|.++++||.+|+-.+. . .+-+++++...+..++| .|+-..-...+..+.. -+.|+++++
T Consensus 112 vf~~ql~lA~e~~~Pv~iH~r~a~---------~-~~l~iL~~~~~~~~~~v-~H~fsG~~~~a~~~~~--~G~~is~~g 178 (265)
T PRK10812 112 SFRHHIQIGRELNKPVIVHTRDAR---------A-DTLAILREEKVTDCGGV-LHCFTEDRETAGKLLD--LGFYISFSG 178 (265)
T ss_pred HHHHHHHHHHHhCCCeEEEeeCch---------H-HHHHHHHhhcCCCCCEE-EEeecCCHHHHHHHHH--CCCEEEECe
Confidence 444457889999999999985321 1 22334442122333555 6882111222333332 378999887
Q ss_pred ccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCC-ccchhh---hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHH
Q 005679 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIF 370 (683)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-Pe~~~~---~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~ 370 (683)
...+-. .+.+++++..+|.+|+|..||+++. |..+.. ...+...++ +.+++. ..++. +.+.+++
T Consensus 179 ~~t~~~----~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~-~~ia~l---~g~~~----eei~~~~ 246 (265)
T PRK10812 179 IVTFRN----AEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVA-EYMAVL---KGVSV----EELAQVT 246 (265)
T ss_pred eeecCc----cHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHH-HHHHHH---hCCCH----HHHHHHH
Confidence 653211 2367888899999999999998754 221110 011222221 223322 24554 5589999
Q ss_pred HHHHHHHhcCC
Q 005679 371 ALNAAQFYKIN 381 (683)
Q Consensus 371 ~~NA~rly~l~ 381 (683)
++|++|+|+++
T Consensus 247 ~~N~~~lf~~~ 257 (265)
T PRK10812 247 TDNFARLFHID 257 (265)
T ss_pred HHHHHHHHCCC
Confidence 99999999984
No 22
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.93 E-value=0.00015 Score=76.58 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=84.1
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCC-CCcHHHHHHHHhhCCeeEecccc
Q 005679 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS-YPFSKEASYLAYVYPQVYLDFGL 294 (683)
Q Consensus 216 ~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g-~p~~~e~~~la~~~pnVy~d~s~ 294 (683)
+...+++|.++|+||.+|++.+.. +....+. .+++..++..++++.|+. ..-...+..++.. ++|++++.
T Consensus 138 f~~~~~lA~~~~~Pv~iH~~~~~~------~~~~~l~-~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~--G~~i~~~~ 208 (293)
T cd00530 138 LRAAARAQKETGVPISTHTQAGLT------MGLEQLR-ILEEEGVDPSKVVIGHLDRNDDPDYLLKIAAL--GAYLEFDG 208 (293)
T ss_pred HHHHHHHHHHHCCeEEEcCCCCcc------ccHHHHH-HHHHcCCChhheEEeCCCCCCCHHHHHHHHhC--CCEEEeCC
Confidence 334578899999999999975310 1111233 333224566679999995 2222333444432 68877775
Q ss_pred ccCC-----ccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccc--hhh--hHHHHHHHHHHHHHhhhhcCCCChhHHHHH
Q 005679 295 AIPK-----LSVQGMISSIKELLELAPTKKVMFSTDAYASPET--YFL--GAKRAREVVFSVLRDTCIDEDLSVGEAIEV 365 (683)
Q Consensus 295 ~~~~-----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~--~~~--~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~ 365 (683)
.... .+.....+.++++++.++.+|||++||++..+.. .+. ...+... .+....+...++. +.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~----e~ 280 (293)
T cd00530 209 IGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYILT----RFIPRLRERGVTE----EQ 280 (293)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHHHH----HHHHHHHHcCCCH----HH
Confidence 4321 1111234578999999999999999997653211 000 1111111 1122222334554 56
Q ss_pred HHHHHHHHHHHHh
Q 005679 366 AKDIFALNAAQFY 378 (683)
Q Consensus 366 ~~~I~~~NA~rly 378 (683)
+.+++.+|++|+|
T Consensus 281 i~~~~~~N~~~lf 293 (293)
T cd00530 281 LDTILVENPARFL 293 (293)
T ss_pred HHHHHHHCHHHhC
Confidence 9999999999987
No 23
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=97.84 E-value=0.00074 Score=69.56 Aligned_cols=213 Identities=19% Similarity=0.251 Sum_probs=123.4
Q ss_pred cccHHHHHHHHHHHHHhhcccceeee-eeeccccCCCCCCCCCHHHHHHHHHHH-Hhc------CC----CCccCchhhh
Q 005679 145 IWTLDVFIETFLKQLRSAANKIVGLK-SIAAYRSGLEINPHVTKKDAEEGLAED-LRS------GK----PVRITNKSLI 212 (683)
Q Consensus 145 ~~~~~~~~~al~~~l~~~~~~~vgfk-si~~y~~gl~~~~~~~~~ea~~~~~~~-l~~------~~----~~~~~~~~l~ 212 (683)
+.|.++ .-++++||-.+.+.-.-|+ -+.||-+. ..+++++++++++. ..+ +. ..-+++ +.
T Consensus 47 vtt~~~-a~aYr~rIl~a~p~~~~F~PLMtlYLtd-----~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~--~~ 118 (344)
T COG0418 47 VTTVAD-ALAYRERILKAVPAGHRFTPLMTLYLTD-----STTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTD--IE 118 (344)
T ss_pred cccHHH-HHHHHHHHHHhCcCCCCCceeEEEEecC-----CCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCc--HH
Confidence 444443 3567888876543322344 24567542 24688899888773 221 10 111122 22
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCcc----chHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCC-e
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-Q 287 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~----~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~p-n 287 (683)
.+.|++|..++.|+|+.+|--..+...|..-.... .|+.+.+ +||++|||+-|+. ..+++.+..... |
T Consensus 119 --~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~--~fP~LKIV~EHiT---T~dav~~v~~~~~n 191 (344)
T COG0418 119 --KIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQ--RFPKLKIVLEHIT---TKDAVEYVKDANNN 191 (344)
T ss_pred --HHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHh--hCCcceEEEEEec---cHHHHHHHHhcCcc
Confidence 46789999999999999998766555553323333 4556666 8999999999994 455566665555 3
Q ss_pred eEecccccc--------------CCc-c-----HHHHHHHHHHHHhhCCCCcEEEecCCCCCccch----------hhhH
Q 005679 288 VYLDFGLAI--------------PKL-S-----VQGMISSIKELLELAPTKKVMFSTDAYASPETY----------FLGA 337 (683)
Q Consensus 288 Vy~d~s~~~--------------~~~-~-----~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~----------~~~~ 337 (683)
|+.-+..-. |+. . +..-+..|+++. ..|..|+.|||||-+++-.. |. +
T Consensus 192 laATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa-~sg~~kfFlGtDSAPH~~~~Ke~~cgcAG~fs-a 269 (344)
T COG0418 192 LAATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAA-TSGHPKFFLGTDSAPHARSRKESACGCAGIFS-A 269 (344)
T ss_pred eeeEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHH-hcCCCcEEecCCCCCCcccccccccccccccc-c
Confidence 666554311 111 0 111122444433 34567999999986655310 00 1
Q ss_pred HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCCC
Q 005679 338 KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINLG 383 (683)
Q Consensus 338 ~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~~~ 383 (683)
-..-..++.++.+. -|.+-.+..+..|..++|+|+..
T Consensus 270 p~al~~~AevFE~~---------naL~~LeaF~S~nGp~fY~lp~n 306 (344)
T COG0418 270 PFALPLYAEVFEEE---------NALDNLEAFASDNGPKFYGLPRN 306 (344)
T ss_pred HhHHHHHHHHHHHh---------cHHHHHHHHHhhcCcceecccCC
Confidence 11223344444321 14477899999999999999733
No 24
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.84 E-value=0.00017 Score=75.02 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecC-CCCcHHHHHHHHhhCCeeEeccc
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDFG 293 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~-g~p~~~e~~~la~~~pnVy~d~s 293 (683)
.|...+++|.++++||++|+=-. .- .+-.++++-..+ .+ +++|+ +.+ ...+..+.. -+.|+.++
T Consensus 115 vf~~ql~lA~~~~~Pv~iH~r~a---------~~-~~~~il~~~~~~-~~-~i~H~fsG~-~~~a~~~l~--~G~~iS~~ 179 (258)
T PRK11449 115 LLDEQLKLAKRYDLPVILHSRRT---------HD-KLAMHLKRHDLP-RT-GVVHGFSGS-LQQAERFVQ--LGYKIGVG 179 (258)
T ss_pred HHHHHHHHHHHhCCCEEEEecCc---------cH-HHHHHHHhcCCC-CC-eEEEcCCCC-HHHHHHHHH--CCCEEEeC
Confidence 44445789999999999999321 11 233344421112 23 35676 222 233333333 26888888
Q ss_pred cccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhh----HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 005679 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (683)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~----~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (683)
+++.+.. ...+++++...|.+|||+.||++..|...+-+ ..+..+.+. .+++. ..++. +.+.++
T Consensus 180 g~it~~~----~~~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~-~ia~l---~~~~~----~el~~~ 247 (258)
T PRK11449 180 GTITYPR----ASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFD-VLCEL---RPEPA----DEIAEV 247 (258)
T ss_pred ccccccC----cHHHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHH-HHHHH---HCcCH----HHHHHH
Confidence 8764321 13578888899999999999987644211100 112222221 12221 23333 458889
Q ss_pred HHHHHHHHhcC
Q 005679 370 FALNAAQFYKI 380 (683)
Q Consensus 370 ~~~NA~rly~l 380 (683)
.++|+.++|++
T Consensus 248 ~~~N~~~lf~~ 258 (258)
T PRK11449 248 LLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHhCc
Confidence 99999999985
No 25
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.69 E-value=0.00013 Score=75.72 Aligned_cols=140 Identities=25% Similarity=0.323 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecC-CCCcHHHHHHHHhhCCeeEe
Q 005679 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYL 290 (683)
Q Consensus 212 ~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~-g~p~~~e~~~la~~~pnVy~ 290 (683)
+...|...+++|.++++||++|+-- +.. .+-+++++-..|+. -++.|+ +.+. .++..+.. .++|+
T Consensus 109 Q~~vF~~ql~lA~~~~~pv~iH~r~---------a~~-~~l~il~~~~~~~~-~~i~H~f~g~~-~~~~~~~~--~g~~~ 174 (255)
T PF01026_consen 109 QEEVFERQLELAKELNLPVSIHCRK---------AHE-ELLEILKEYGPPNL-RVIFHCFSGSP-EEAKKFLD--LGCYF 174 (255)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEES---------HHH-HHHHHHHHTTGGTS-EEEETT--S-H-HHHHHHHH--TTEEE
T ss_pred HHHHHHHHHHHHHHhCCcEEEecCC---------cHH-HHHHHHHhccccce-eEEEecCCCCH-HHHHHHHh--cCceE
Confidence 3344555678999999999999942 112 23344553223344 556676 2222 22222322 28999
Q ss_pred ccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCC-cc-----chhhhHHHHHHHHHHHHHhhhhcCCCChhHHHH
Q 005679 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PE-----TYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIE 364 (683)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-Pe-----~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~ 364 (683)
.++....... .+..++++...|.+|||.-||+++. |. ...+. ...+.+ +.+++ -..++. +
T Consensus 175 S~~~~~~~~~----~~~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~--~i~~~~-~~la~---~~~~~~----e 240 (255)
T PF01026_consen 175 SFSGAITFKN----SKKVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPS--NIPKVA-QALAE---IKGISL----E 240 (255)
T ss_dssp EEEGGGGSTT----SHHHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GG--GHHHHH-HHHHH---HHTSTH----H
T ss_pred Eecccccccc----cHHHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChH--HHHHHH-HHHHH---HcCCCH----H
Confidence 9998764321 2247777889999999999997542 20 00111 122221 11222 124555 5
Q ss_pred HHHHHHHHHHHHHhc
Q 005679 365 VAKDIFALNAAQFYK 379 (683)
Q Consensus 365 ~~~~I~~~NA~rly~ 379 (683)
.+..+.++|++|+||
T Consensus 241 ~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 241 ELAQIIYENAKRLFG 255 (255)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 599999999999996
No 26
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.00058 Score=70.49 Aligned_cols=139 Identities=24% Similarity=0.286 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcH-HHHHHHHhhCCeeEeccc
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS-KEASYLAYVYPQVYLDFG 293 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~-~e~~~la~~~pnVy~d~s 293 (683)
.|..-+++|.++++||.+|+=-.. ..+-++++ +++...=.++|| +.-. .++..+. .. ..|+.+|
T Consensus 113 ~F~~ql~lA~~~~lPviIH~R~A~----------~d~~~iL~--~~~~~~~gi~Hc-FsGs~e~a~~~~-d~-G~yisis 177 (256)
T COG0084 113 VFEAQLELAKELNLPVIIHTRDAH----------EDTLEILK--EEGAPVGGVLHC-FSGSAEEARKLL-DL-GFYISIS 177 (256)
T ss_pred HHHHHHHHHHHcCCCEEEEccccH----------HHHHHHHH--hcCCCCCEEEEc-cCCCHHHHHHHH-Hc-CeEEEEC
Confidence 444457899999999999984211 12445666 354334456687 2222 2222222 22 3999999
Q ss_pred cccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhh----HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 005679 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (683)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~----~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I 369 (683)
++..+-. ..-+++++...|.+|+|.-||++..+...+-+ ..+.+. ..+.++++ ..++. +.+..+
T Consensus 178 G~itfk~----a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~-v~~~iAel---k~~~~----eeva~~ 245 (256)
T COG0084 178 GIVTFKN----AEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRH-VAEKLAEL---KGISA----EEVAEI 245 (256)
T ss_pred ceeecCC----cHHHHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHH-HHHHHHHH---hCCCH----HHHHHH
Confidence 9986532 23688889999999999999987653221222 123333 33445544 24554 558899
Q ss_pred HHHHHHHHhcC
Q 005679 370 FALNAAQFYKI 380 (683)
Q Consensus 370 ~~~NA~rly~l 380 (683)
.++|+++||++
T Consensus 246 t~~N~~~lf~~ 256 (256)
T COG0084 246 TTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 27
>PRK09875 putative hydrolase; Provisional
Probab=97.41 E-value=0.0047 Score=65.26 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=83.2
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcH-HHHHHHHhhCCeeEeccccccCC
Q 005679 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS-KEASYLAYVYPQVYLDFGLAIPK 298 (683)
Q Consensus 220 ~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~-~e~~~la~~~pnVy~d~s~~~~~ 298 (683)
.+...+.|.||.+|++.+.. -...++ ++++...+--++|+.|+..... .....++..=-.|-+|+-+.-..
T Consensus 145 a~a~~~TG~pi~~Ht~~~~~-------g~e~l~-il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~ 216 (292)
T PRK09875 145 ALAHNQTGRPISTHTSFSTM-------GLEQLA-LLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSY 216 (292)
T ss_pred HHHHHHHCCcEEEcCCCccc-------hHHHHH-HHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCccc
Confidence 45567899999999987531 122344 4554355556999999964332 22234443222344443222111
Q ss_pred ccHHHHHHHHHHHHhhCCCCcEEEecCCCCC-ccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHH
Q 005679 299 LSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (683)
Q Consensus 299 ~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rl 377 (683)
.+.....+.++.+++.+-.+|||.|+|...- +-..|.+ .-+..++.+++..+.+.| ++ + +.+++|+.+|.+|+
T Consensus 217 ~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg-~G~~~i~~~~ip~L~~~G-vs--e--~~I~~m~~~NP~r~ 290 (292)
T PRK09875 217 YPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGG-YGYDYLLTTFIPQLRQSG-FS--Q--ADVDVMLRENPSQF 290 (292)
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCC-CChhHHHHHHHHHHHHcC-CC--H--HHHHHHHHHCHHHH
Confidence 2222334577777777757999999995211 1111111 112234445555555554 44 4 77999999999999
Q ss_pred hc
Q 005679 378 YK 379 (683)
Q Consensus 378 y~ 379 (683)
|.
T Consensus 291 ~~ 292 (292)
T PRK09875 291 FQ 292 (292)
T ss_pred hC
Confidence 84
No 28
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.31 E-value=0.0042 Score=67.10 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCCCC---CCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCC-eeE
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRL---SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-QVY 289 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~---~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~p-nVy 289 (683)
..++++++.|+++|+||.+|++...-..+... .....+..+++ +||++++++.|.|. .+...++..+. ||+
T Consensus 113 ~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~--~~p~~~v~i~Hvst---~~~~~~i~~ak~~vt 187 (335)
T cd01294 113 EKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQ--RFPKLKIVLEHITT---ADAVEYVKSCNENVA 187 (335)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHH--HcCCCeEEEecccH---HHHHHHHHhCCCCcE
Confidence 46778899999999999999985321000000 00124666777 79999999999984 45566666555 899
Q ss_pred eccccccCCc----------------cH----HHHHHHHHHHHhhCCCCcEEEecCCCCCccc-----hh-hhHHHHHHH
Q 005679 290 LDFGLAIPKL----------------SV----QGMISSIKELLELAPTKKVMFSTDAYASPET-----YF-LGAKRAREV 343 (683)
Q Consensus 290 ~d~s~~~~~~----------------~~----~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~-----~~-~~~~~~r~~ 343 (683)
.+++..+-.+ +| ..-+..|-+.+. -|.=.++++||--++... ++ .+.......
T Consensus 188 ~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~-~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~~~ 266 (335)
T cd01294 188 ATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAAT-SGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIA 266 (335)
T ss_pred EEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHH-cCCCCeEEECCCCCCCCccccCCCCCccccCHHHH
Confidence 8866432111 01 111223333332 233444689994322110 00 011112112
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+--++ +.++ +.+++++ .-.++..|.+|+|||.
T Consensus 267 l~~~~-~~~~-~~l~l~~----~v~~~s~nPA~i~gl~ 298 (335)
T cd01294 267 LPYLA-EVFE-EHNALDK----LEAFASDNGPNFYGLP 298 (335)
T ss_pred HHHHH-HHHh-ccCCHHH----HHHHHHhHHHHHhCCC
Confidence 32333 3344 5788755 7889999999999984
No 29
>PRK10425 DNase TatD; Provisional
Probab=97.23 E-value=0.0025 Score=66.23 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCC-cHHHHHHHHhhCCeeEeccc
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP-FSKEASYLAYVYPQVYLDFG 293 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p-~~~e~~~la~~~pnVy~d~s 293 (683)
.+...+++|.++++||.+|+=-. . ..+-++++. ..|+.+=++.|+ |. -...+..+.. .+.|+.++
T Consensus 109 vF~~ql~lA~~~~~Pv~iH~r~a---------~-~~~l~iL~~-~~~~~~~~i~H~-fsG~~~~~~~~l~--~G~~~si~ 174 (258)
T PRK10425 109 AFVAQLAIAAELNMPVFMHCRDA---------H-ERFMALLEP-WLDKLPGAVLHC-FTGTREEMQACLA--RGLYIGIT 174 (258)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCc---------h-HHHHHHHHH-hccCCCCeEEEe-cCCCHHHHHHHHH--CCCEEEEC
Confidence 34445789999999999998311 1 123344552 123332134698 21 1223333333 38999988
Q ss_pred cccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCC-ccchh-------hhHHHHHHHHHHHHHhhhhcCCCChhHHHHH
Q 005679 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYF-------LGAKRAREVVFSVLRDTCIDEDLSVGEAIEV 365 (683)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-Pe~~~-------~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~ 365 (683)
+..... +. ...++++++..|.+|+|.-||+++. |..+. ....+...++ ..+++. ..++. +.
T Consensus 175 g~i~~~-~~--~~~~~~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~-~~iA~l---~~~~~----~~ 243 (258)
T PRK10425 175 GWVCDE-RR--GLELRELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHIL-QRIAHW---RGEDA----AW 243 (258)
T ss_pred ceeecc-cc--cHHHHHHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHH-HHHHHH---HCcCH----HH
Confidence 865322 11 1267888899999999999998753 32110 0011222222 222221 23554 55
Q ss_pred HHHHHHHHHHHHhcC
Q 005679 366 AKDIFALNAAQFYKI 380 (683)
Q Consensus 366 ~~~I~~~NA~rly~l 380 (683)
+..+.++|+.++|++
T Consensus 244 v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 244 LAATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHHhCc
Confidence 888999999999985
No 30
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.14 E-value=0.0048 Score=61.13 Aligned_cols=136 Identities=21% Similarity=0.298 Sum_probs=79.4
Q ss_pred HHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEeccccccCC
Q 005679 219 SLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPK 298 (683)
Q Consensus 219 l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~s~~~~~ 298 (683)
-+++|.++++|+.+||-.++. ....+..|+ ++.+..++.-.+|+-|...-... .+.. ...|+++.-....
T Consensus 119 QL~LA~e~dvPviVHTPr~nK----~e~t~~ild-i~~~~~l~~~lvvIDH~N~etv~---~vld--~e~~vGlTvqPgK 188 (254)
T COG1099 119 QLELARELDVPVIVHTPRRNK----KEATSKILD-ILIESGLKPSLVVIDHVNEETVD---EVLD--EEFYVGLTVQPGK 188 (254)
T ss_pred HHHHHHHcCCcEEEeCCCCcc----hhHHHHHHH-HHHHcCCChhheehhcccHHHHH---HHHh--ccceEEEEecCCc
Confidence 367899999999999976531 112233344 44434677778889998543332 1221 2456666543222
Q ss_pred ccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHh
Q 005679 299 LSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFY 378 (683)
Q Consensus 299 ~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly 378 (683)
..+..+.+++ ...+.+|||..||.-+-++-.+. .-|.++. + +...+ ++ +..++++++||.++|
T Consensus 189 lt~~eAveIV----~ey~~~r~ilnSD~~s~~sd~la---vprtal~-----m-~~~gv--~~--~~i~kV~~~NA~~~~ 251 (254)
T COG1099 189 LTVEEAVEIV----REYGAERIILNSDAGSAASDPLA---VPRTALE-----M-EERGV--GE--EEIEKVVRENALSFY 251 (254)
T ss_pred CCHHHHHHHH----HHhCcceEEEecccccccccchh---hhHHHHH-----H-HHhcC--CH--HHHHHHHHHHHHHHh
Confidence 3333333333 34568999999998765543221 1122221 1 11123 33 679999999999999
Q ss_pred cCC
Q 005679 379 KIN 381 (683)
Q Consensus 379 ~l~ 381 (683)
|++
T Consensus 252 ~l~ 254 (254)
T COG1099 252 GLS 254 (254)
T ss_pred CcC
Confidence 974
No 31
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=96.51 E-value=0.02 Score=60.52 Aligned_cols=82 Identities=22% Similarity=0.191 Sum_probs=60.6
Q ss_pred eeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchH-HHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcC-hH
Q 005679 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVS-PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VA 603 (683)
Q Consensus 526 ~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~~ 603 (683)
++|+|.||+|+++. . ..+. .... .++.++...+ | ..+++|...+|.||+..|. +.
T Consensus 1 t~GvE~E~~lvD~~--t----~~~~-----------~~~~~~~l~~~~~~~---~---~~~~~El~~~qiEi~t~p~~~~ 57 (287)
T TIGR02050 1 TLGVEEELLLVDPH--T----YDLA-----------ASASAVLIGACREKI---G---AGFKHELFESQVELATPVCTTL 57 (287)
T ss_pred CceeeeeeeeEcCC--c----cCcC-----------ccChHHHHHhhhhhc---c---cccChhhhccEEEecCCCcCCH
Confidence 47999999999861 1 1111 0112 4444444322 2 3499999999999999996 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEEe
Q 005679 604 AKAADNLIFTREVLRAVARKHGLLATF 630 (683)
Q Consensus 604 l~aaD~~~~~k~~ik~vA~~~G~~ATF 630 (683)
-++.+.+...+..++++|+++|+...-
T Consensus 58 ~~l~~~l~~~~~~l~~~a~~~g~~l~~ 84 (287)
T TIGR02050 58 AEAAAQIRAVRARLVQAASDHGLRICG 84 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEe
Confidence 889999999999999999999987643
No 32
>PRK05451 dihydroorotase; Provisional
Probab=96.44 E-value=0.037 Score=60.11 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCcc-----chHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCC
Q 005679 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (683)
Q Consensus 212 ~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~-----~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~p 286 (683)
++..++++++.|+++|+||.+|++-.+...+. ...+. .+..+++ ++|+++++++|.|.+..-+++.-+ ..
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~-~~~e~~~~~~~l~~lA~--~~pg~~lhI~Hlst~~~~e~i~~a--~~ 190 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDI-FDREAVFIDRVLEPLRR--RFPKLKIVFEHITTKDAVDYVREA--ND 190 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCccccc-ccchHHHHHHHHHHHHH--hcCCCcEEEEecCcHHHHHHHHhc--CC
Confidence 45577888999999999999999863211111 11122 3466777 799999999999865443333222 56
Q ss_pred eeEecccccc
Q 005679 287 QVYLDFGLAI 296 (683)
Q Consensus 287 nVy~d~s~~~ 296 (683)
||+.+++..+
T Consensus 191 ~it~Et~ph~ 200 (345)
T PRK05451 191 NLAATITPHH 200 (345)
T ss_pred CEEEEecHHH
Confidence 8998887644
No 33
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=96.42 E-value=0.024 Score=62.04 Aligned_cols=128 Identities=18% Similarity=0.208 Sum_probs=84.9
Q ss_pred eeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcC-h
Q 005679 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (683)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~ 602 (683)
.+++|+|+||+|+++. ++ .+. +..+++++.+..-. --+.+.+|...+|.|++.+|. +
T Consensus 11 ~~t~GvE~E~~LVD~~--t~----~~~---------------~~~~~vl~~~~~~~-~~~~v~~El~~~qIEi~T~p~~~ 68 (373)
T PRK13516 11 PFTLGVELELQLVNPH--DY----DLT---------------QDSSDLLRAVKNQP-TAGEIKPEITESMIEIATGVCRD 68 (373)
T ss_pred CCeeEEEEEEEeEcCC--Cc----CcC---------------ccHHHHHHhccccc-cccccChhhhCceEEEcCCCCCC
Confidence 4599999999999861 11 111 11233444443211 123688999999999999997 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeEEeeec----------ccC--------------------CCCcccccCCCCCCCC
Q 005679 603 AAKAADNLIFTREVLRAVARKHGLLATFVPN----------LWQ--------------------NGENVFMASDSSSKHG 652 (683)
Q Consensus 603 ~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpK----------l~~--------------------~g~N~f~~~~~~~~~~ 652 (683)
.-++.+.+...+..+++.|+++|+...=..- +++ -|.+++.+..
T Consensus 69 ~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~------ 142 (373)
T PRK13516 69 IDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGCP------ 142 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhhhhhhheeeeeEEEeCCC------
Confidence 7789999999999999999999987543222 111 1223343211
Q ss_pred CcHHHHHHHHHHHHHHHHhHhhhcCCC
Q 005679 653 MSSVGEKFMAGVLHHLSSILAFTAPVP 679 (683)
Q Consensus 653 lS~~~~~fiaGiL~h~~al~a~~~Pt~ 679 (683)
=.+.+-..+-.+..++|.+.|+++.++
T Consensus 143 d~~~av~~~~~l~~~lP~llALsAsSP 169 (373)
T PRK13516 143 SGDDALYLLHGLSRYVPHFIALSASSP 169 (373)
T ss_pred CHHHHHHHHHHHHhHhHHHHHHHhCCc
Confidence 023456667778888899999988764
No 34
>PRK13517 carboxylate-amine ligase; Provisional
Probab=96.41 E-value=0.024 Score=62.17 Aligned_cols=128 Identities=26% Similarity=0.289 Sum_probs=86.4
Q ss_pred eeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcC-h
Q 005679 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (683)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~ 602 (683)
.+++|+|.||+++++. ++. + .+...++++.+.... .-..+..|...+|.||+.+|. +
T Consensus 10 ~~tiGvE~E~~lVD~~--t~~----~---------------~~~~~~vl~~~~~~~-~~~~i~~El~~~qiEi~t~p~~~ 67 (373)
T PRK13517 10 RPTLGVEWELLLVDPE--TGE----L---------------SPRAAEVLAAAGEDD-EGPHLQKELLRNTVEVVTGVCDT 67 (373)
T ss_pred CCeeEeeeeEeeECCC--cCC----c---------------CccHHHHHHhccccc-CCCcccccccCCEEEECCCCCCC
Confidence 4699999999999861 111 1 122344555444211 124788899999999999997 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeEE---eeecc-c--------------------------CCCCcccccCCCCCCCC
Q 005679 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPNL-W--------------------------QNGENVFMASDSSSKHG 652 (683)
Q Consensus 603 ~l~aaD~~~~~k~~ik~vA~~~G~~AT---FmpKl-~--------------------------~~g~N~f~~~~~~~~~~ 652 (683)
.-++.+.+...+..++++|+++|+..- .+|.. | -.|-+++.+.++
T Consensus 68 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~----- 142 (373)
T PRK13517 68 VAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPS----- 142 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCC-----
Confidence 888999999999999999999997654 34441 0 012223322110
Q ss_pred CcHHHHHHHHHHHHHHHHhHhhhcCCC
Q 005679 653 MSSVGEKFMAGVLHHLSSILAFTAPVP 679 (683)
Q Consensus 653 lS~~~~~fiaGiL~h~~al~a~~~Pt~ 679 (683)
-+.+-..+..+...+|-+.|+++.++
T Consensus 143 -~~~~i~~~n~l~~~lP~llALsAnSP 168 (373)
T PRK13517 143 -REKVVPVINRLRPWLPHLLALSANSP 168 (373)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 13456677788889999999988765
No 35
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=96.31 E-value=0.024 Score=60.34 Aligned_cols=148 Identities=21% Similarity=0.138 Sum_probs=81.6
Q ss_pred HHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCC-CcHHHHHHHHhhCCeeEeccc----
Q 005679 219 SLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY-PFSKEASYLAYVYPQVYLDFG---- 293 (683)
Q Consensus 219 l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~-p~~~e~~~la~~~pnVy~d~s---- 293 (683)
+.....+.|.||.+|++.|. ..++..-+++.+..-+--+||+.|+.. +-......++..=-+|-+|.-
T Consensus 147 aa~A~~~TG~pI~~H~~~g~-------~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~ 219 (308)
T PF02126_consen 147 AARAHKETGAPISTHTGRGT-------RMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGREF 219 (308)
T ss_dssp HHHHHHHHT-EEEEEESTTG-------TCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-
T ss_pred HHHHHHHhCCeEEEcCCCCC-------cCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcccc
Confidence 34556788999999998762 124433344444466778999999952 222223455544334555554
Q ss_pred -cccC----CccHHH-HHHHHHHHHhhCCCCcEEEecCCCC-CccchhhhHHHH-HHHHHHHHHhhhhcCCCChhHHHHH
Q 005679 294 -LAIP----KLSVQG-MISSIKELLELAPTKKVMFSTDAYA-SPETYFLGAKRA-REVVFSVLRDTCIDEDLSVGEAIEV 365 (683)
Q Consensus 294 -~~~~----~~~~~g-~~~~l~~~le~~~~~kilfgSD~~~-~Pe~~~~~~~~~-r~~l~~~l~~~v~~g~l~~~ea~~~ 365 (683)
.+.. .+.++. -.+.+.++++.+-.+|||.|.|... .....+.+.-+. .-.+.+++..+.+.| ++ + +.
T Consensus 220 ~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L~~~G-v~--~--~~ 294 (308)
T PF02126_consen 220 SGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRLKERG-VS--E--ED 294 (308)
T ss_dssp TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHHHHTT-S---H--HH
T ss_pred cCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHHHHHcC-CC--H--HH
Confidence 2211 011222 2347888888888899999999644 121112222211 112344455444444 44 4 67
Q ss_pred HHHHHHHHHHHHh
Q 005679 366 AKDIFALNAAQFY 378 (683)
Q Consensus 366 ~~~I~~~NA~rly 378 (683)
.++|+-+|.+|+|
T Consensus 295 i~~ilv~NP~r~l 307 (308)
T PF02126_consen 295 IDKILVENPARIL 307 (308)
T ss_dssp HHHHHTHHHHHHH
T ss_pred HHHHHHHCHHHHc
Confidence 8999999999997
No 36
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=96.30 E-value=0.025 Score=57.82 Aligned_cols=104 Identities=26% Similarity=0.192 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEecc
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDF 292 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~ 292 (683)
+..+..+++.+.++|+|+.+|++.+... ...+..+++.... +.++++.|++......+..++ .. ++++++
T Consensus 132 ~~~~~~~~~~a~~~~~~i~~H~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~-~~-g~~~~~ 201 (275)
T cd01292 132 DESLRRVLEEARKLGLPVVIHAGELPDP-------TRALEDLVALLRL-GGRVVIGHVSHLDPELLELLK-EA-GVSLEV 201 (275)
T ss_pred cHHHHHHHHHHHHcCCeEEEeeCCcccC-------ccCHHHHHHHHhc-CCCEEEECCccCCHHHHHHHH-Hc-CCeEEE
Confidence 3455667888999999999999865211 1123444442112 679999999865333333333 33 888888
Q ss_pred ccccCCcc--HHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 293 GLAIPKLS--VQGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 293 s~~~~~~~--~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
+...+... .......++++++.+ .++++|||+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lgTD~~~ 237 (275)
T cd01292 202 CPLSNYLLGRDGEGAEALRRLLELG--IRVTLGTDGPP 237 (275)
T ss_pred CCcccccccCCcCCcccHHHHHHCC--CcEEEecCCCC
Confidence 77553321 011123456666654 79999999654
No 37
>PLN02599 dihydroorotase
Probab=95.98 E-value=0.093 Score=57.32 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCcc----chHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhh-CC-
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYV-YP- 286 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~----~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~-~p- 286 (683)
+..++++++.++++|+|+.+|....+...+....... .+..++. ++|++++++.|.+.+.. ..+... ..
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la--~~~g~kI~i~HiSt~~~---ve~v~~ak~~ 209 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQ--KLPQLKIVMEHITTMDA---VEFVESCGDG 209 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHH--hccCCeEEEEecChHHH---HHHHHhccCC
Confidence 3688889999999999999999863211111111112 2232454 79999999999975433 333322 22
Q ss_pred eeEeccccccCCccHH--------------------HHHHHHHHHHhhCCCCcEEEecCCCCCccchhh------hHHHH
Q 005679 287 QVYLDFGLAIPKLSVQ--------------------GMISSIKELLELAPTKKVMFSTDAYASPETYFL------GAKRA 340 (683)
Q Consensus 287 nVy~d~s~~~~~~~~~--------------------g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~------~~~~~ 340 (683)
||+.+++...-.+..+ .-+..|.+.+.- |.-+.++|||.-+++..... +....
T Consensus 210 ~vtae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~-G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~ 288 (364)
T PLN02599 210 NVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATS-GSKKFFLGTDSAPHPKRAKEASCGCAGIYSA 288 (364)
T ss_pred CEEEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHc-CCCCEEEecCCCCCChHHhcCCCCCCCcccH
Confidence 7888776532111110 111233332221 21245799997554321110 10000
Q ss_pred HHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 341 REVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 341 r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
--.+. ++...+.++. ++ +...+++..|.+++|||+
T Consensus 289 ~~~l~-~l~~~~~~~g-~l----~~l~~~~S~npA~~~gL~ 323 (364)
T PLN02599 289 PVALS-LYAKAFEEAG-AL----DKLEAFTSFNGPDFYGLP 323 (364)
T ss_pred HHHHH-HHHHHHHhcC-CH----HHHHHHHhHHHHHHhCCC
Confidence 00122 2333333322 54 448889999999999994
No 38
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=95.68 E-value=0.16 Score=55.19 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCe
Q 005679 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (683)
Q Consensus 212 ~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pn 287 (683)
++..++++++.|+++|+||.+|++-.....+. ..+.|..+..+++ ++|++++++.|.+.+-.-++..-+ ..+
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~--~~~~~~~~i~H~st~~~~~~i~~a--~~~ 188 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQ--RFPALKVVLEHITTKDAIDYVEDG--NNR 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHH--HccCCeEEEEecCcHHHHHHHHHc--CCC
Confidence 34678889999999999999999864111111 1234445666676 799999999999865443333222 224
Q ss_pred eEeccccc
Q 005679 288 VYLDFGLA 295 (683)
Q Consensus 288 Vy~d~s~~ 295 (683)
|+.+++..
T Consensus 189 vt~E~~ph 196 (341)
T TIGR00856 189 LAATITPQ 196 (341)
T ss_pred EEEEEcHH
Confidence 77777653
No 39
>PRK13515 carboxylate-amine ligase; Provisional
Probab=95.66 E-value=0.077 Score=58.22 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=83.5
Q ss_pred eeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcC-h
Q 005679 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (683)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~ 602 (683)
.+++|+|.||+++++. ++ .+. ... .+++..+... .-.++++|...+|.||+.+|. +
T Consensus 5 ~~t~GvE~E~~lVD~~--t~----~l~-----------~~~----~~~l~~~~~~--~~~~i~~El~~~qiEi~T~p~~~ 61 (371)
T PRK13515 5 EFTLGIEEEYLLVDPE--TR----DLR-----------SYP----DALVEACRDT--LGEQVKPEMHQSQVEVGTPVCAT 61 (371)
T ss_pred CCcceEeEeEEEecCC--cc----ccc-----------ccH----HHHHHhchhh--cCCccCcchhccEEEECCcccCC
Confidence 4689999999999861 11 111 011 3444443332 123799999999999999997 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeEE---eeec-ccC--------------------------CCCcccccCCCCCCCC
Q 005679 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPN-LWQ--------------------------NGENVFMASDSSSKHG 652 (683)
Q Consensus 603 ~l~aaD~~~~~k~~ik~vA~~~G~~AT---FmpK-l~~--------------------------~g~N~f~~~~~~~~~~ 652 (683)
.-++.+.+...+..+..+|+++|+... .+|. .|. .|-+++. +
T Consensus 62 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv--------~ 133 (371)
T PRK13515 62 IAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHV--------G 133 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEe--------C
Confidence 778999999999999999999999874 3443 111 1112222 2
Q ss_pred Cc--HHHHHHHHHHHHHHHHhHhhhcCCC
Q 005679 653 MS--SVGEKFMAGVLHHLSSILAFTAPVP 679 (683)
Q Consensus 653 lS--~~~~~fiaGiL~h~~al~a~~~Pt~ 679 (683)
+. +..-.++-.+.-.+|-+.|+++.++
T Consensus 134 ~~d~e~~~~~~n~~~~~lP~llALsanSP 162 (371)
T PRK13515 134 IPDREDRIDLMNQVRYFLPHLLALSTSSP 162 (371)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 22 3456667778778888888877653
No 40
>PLN02611 glutamate--cysteine ligase
Probab=95.14 E-value=0.068 Score=60.01 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=59.8
Q ss_pred eeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHh-CCCc-------e-------eEeecc
Q 005679 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHS-LNIS-------V-------EQLHAE 588 (683)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~-~Gi~-------v-------e~~h~E 588 (683)
...+|+|+|.++|+.. + .+|++ | . -+.++++.|.+ .|.+ + ..+-=|
T Consensus 67 ~~~iG~E~E~f~~~~~--~----~~pv~---y------~----~i~~lL~~l~~~~gw~~~~e~g~iIgl~~~g~~ITlE 127 (482)
T PLN02611 67 KWRIGTEHEKFGFELA--T----LRPMK---Y------D----QIAQLLEGLAERFGWEKIMEGDNIIGLKQDGQSVSLE 127 (482)
T ss_pred CCeeEEeeeeeeccCC--C----CCCCC---H------H----HHHHHHHHHHHhcCCceeccCCceecccCCCCceEec
Confidence 5799999999999862 1 12322 1 1 23444444422 2210 0 244557
Q ss_pred CCCCceEEecCcC-hHHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 005679 589 AGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLAT 629 (683)
Q Consensus 589 ~~pGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~AT 629 (683)
-| ||+|++..|. +.-++++.+...+..++.+|+++|+...
T Consensus 128 PG-gQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~ 168 (482)
T PLN02611 128 PG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFL 168 (482)
T ss_pred cc-ceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 66 9999999997 7889999999999999999999999654
No 41
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=95.10 E-value=0.14 Score=52.46 Aligned_cols=134 Identities=23% Similarity=0.292 Sum_probs=78.7
Q ss_pred HHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEecccccc
Q 005679 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAI 296 (683)
Q Consensus 217 ~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~s~~~ 296 (683)
..++++|.+.|.|||+||-..+ ...-..+..++++-.....++|-.|+ -|....+.. .+.||.|
T Consensus 148 ~~a~elA~dvdc~vqLHtes~~------~~~~~~i~~~ak~~G~~~~~VVkHha-~p~v~~~~~-~Gi~pSV-------- 211 (285)
T COG1831 148 EYAMELAKDVDCAVQLHTESLD------EETYEEIAEMAKEAGIKPYRVVKHHA-PPLVLKCEE-VGIFPSV-------- 211 (285)
T ss_pred HHHHHHhhcCCCcEEEecCCCC------hHHHHHHHHHHHHhCCCcceeEeecC-Cccchhhhh-cCcCCcc--------
Confidence 3468899999999999995432 01112456666654455678888887 444332111 2222222
Q ss_pred CCccHHHHHHHHHHHHhhCCCCcEEEecCCCC---CccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHH
Q 005679 297 PKLSVQGMISSIKELLELAPTKKVMFSTDAYA---SPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALN 373 (683)
Q Consensus 297 ~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~---~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~N 373 (683)
+ .-++.+++.++.. .++|+-||.-- -|.....+-..-|+ ..+.+++|.++. +.+.+|+-+|
T Consensus 212 ~-----asr~~v~~a~~~g--~~FmmETDyIDDp~RpgavL~PktVPrr-----~~~i~~~g~~~e----e~vy~i~~E~ 275 (285)
T COG1831 212 P-----ASRKNVEDAAELG--PRFMMETDYIDDPRRPGAVLGPKTVPRR-----TREILEKGDLTE----EDVYRIHVEN 275 (285)
T ss_pred c-----ccHHHHHHHHhcC--CceEeecccccCcccCCCcCCccchhHH-----HHHHHHhcCCcH----HHHHHHHHhC
Confidence 1 2244677777765 69999999422 12211111111222 224455566653 6799999999
Q ss_pred HHHHhcCCC
Q 005679 374 AAQFYKINL 382 (683)
Q Consensus 374 A~rly~l~~ 382 (683)
..++|+++.
T Consensus 276 pe~VYg~~~ 284 (285)
T COG1831 276 PERVYGIEL 284 (285)
T ss_pred HHHHhCccC
Confidence 999999864
No 42
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=94.93 E-value=0.53 Score=49.91 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=83.6
Q ss_pred HHHHHhhCCCcE-EEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCC----Cc-----HHHHHHHHhhCCee
Q 005679 219 SLEVAQFLDLPL-QIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY----PF-----SKEASYLAYVYPQV 288 (683)
Q Consensus 219 l~e~a~e~glpv-q~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~----p~-----~~e~~~la~~~pnV 288 (683)
+.+.|.|+|++| .-|++. --+.+++. +++.++|..|+.. +. .+++-.++..=.=|
T Consensus 154 lV~~~N~LgIiiDlSH~s~------------kt~~Dvl~---~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvI 218 (313)
T COG2355 154 LVREMNELGIIIDLSHLSD------------KTFWDVLD---LSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVI 218 (313)
T ss_pred HHHHHHhcCCEEEecccCC------------ccHHHHHh---ccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEE
Confidence 568899999988 346653 22555665 7889999999852 11 12333444322211
Q ss_pred -------EeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccc-hhh-hHHHHHHHHHHHHHhhhhcCCCCh
Q 005679 289 -------YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPET-YFL-GAKRAREVVFSVLRDTCIDEDLSV 359 (683)
Q Consensus 289 -------y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~-~~~-~~~~~r~~l~~~l~~~v~~g~l~~ 359 (683)
|+.. +--+..+.+.+.+.+..+.+.+|++.|-+|||..+.+.. ... .... +-+++.+..+.| ++
T Consensus 219 gv~~~~~fl~~-~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~----l~~l~~~L~~~G-~~- 291 (313)
T COG2355 219 GVNFIPAFLRP-GGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGK----LPNLTAALIERG-YS- 291 (313)
T ss_pred EEEeehhhccC-CCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhH----HHHHHHHHHHcC-CC-
Confidence 1221 101222456778899999999999999999996554431 011 1112 334455555556 54
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 005679 360 GEAIEVAKDIFALNAAQFYK 379 (683)
Q Consensus 360 ~ea~~~~~~I~~~NA~rly~ 379 (683)
+ +.+++|+++|..|+++
T Consensus 292 -e--~~i~~i~~~N~lRV~~ 308 (313)
T COG2355 292 -E--EEIEKIAGENWLRVLK 308 (313)
T ss_pred -H--HHHHHHHHHhHHHHHH
Confidence 3 6699999999999985
No 43
>PRK13518 carboxylate-amine ligase; Provisional
Probab=94.53 E-value=0.13 Score=55.77 Aligned_cols=81 Identities=23% Similarity=0.207 Sum_probs=61.2
Q ss_pred eeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcC-hHH
Q 005679 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VAA 604 (683)
Q Consensus 526 ~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~~l 604 (683)
++|+|.||.|+++. +. +. ....+++++.+..... -+.+++|...+|.||+.+++ +.-
T Consensus 14 TlGvEeE~~lvD~~---~~----~~--------------~~~~~~vl~~~~~~~~-~~~~~~El~~~qvEi~T~~~~~~~ 71 (357)
T PRK13518 14 TLGIEEEFFVVDEY---GR----PT--------------SGTDELVYEHEPPEIL-AGRLDHELFKFVIETQTPLIEDPS 71 (357)
T ss_pred ceEEEEEEEEECCC---CC----cc--------------cchhHHHHHhcccccC-CCcccccccCceEEEcCcCcCCHH
Confidence 89999999999861 11 10 0112444444443211 24699999999999999997 888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeE
Q 005679 605 KAADNLIFTREVLRAVARKHGLLA 628 (683)
Q Consensus 605 ~aaD~~~~~k~~ik~vA~~~G~~A 628 (683)
++.+++...|..+..+|+++|+..
T Consensus 72 el~~~L~~~r~~l~~aa~~~g~~l 95 (357)
T PRK13518 72 EAGAALREVRDALVDHAAAHGYRI 95 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEE
Confidence 999999999999999999999964
No 44
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=93.89 E-value=0.39 Score=53.72 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCC----eeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCC-------
Q 005679 512 KVSRLLKEEFNL----VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNI------- 580 (683)
Q Consensus 512 r~~~~~~~~~G~----~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi------- 580 (683)
.+++.++ .|. ..++|+|.|-+.|... + .+|++ |.. -..+..+++.+.. ..|.
T Consensus 7 ~l~~~~~--~g~k~~~~~~iG~E~E~f~~~~~--~----~~~~~---y~~---~~gi~~~l~~l~~---~~g~~~~~e~g 69 (446)
T TIGR01436 7 DLIAYLA--AGCKPKEQWRIGTEHEKFGFEKN--T----LRPMK---YEQ---KGGIAELLNGIAE---RFGWQKVMEGD 69 (446)
T ss_pred HHHHHHH--hCCCcCCCCceEeeeeeeeeecC--C----CCCCC---CCC---chhHHHHHHHHHh---hcCCceeccCC
Confidence 4455554 255 4799999999999862 1 12221 211 1123444444432 2221
Q ss_pred ce-------eEeeccCCCCceEEecCcC-hHHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 005679 581 SV-------EQLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLAT 629 (683)
Q Consensus 581 ~v-------e~~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~AT 629 (683)
.+ ..+-=|-| ||+|++..|. +.-++++.+...+..++.+|+++|+...
T Consensus 70 ~~i~l~~~~~~itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~~~a~~~Gl~l~ 125 (446)
T TIGR01436 70 KIIGLKQDKQSISLEPG-GQFELSGAPLETIHETCDEINSHLYQVKEVAEEMGIGFL 125 (446)
T ss_pred ceeeecCCCCeEEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 11 24445666 9999999997 6888999999999999999999999654
No 45
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=93.81 E-value=0.26 Score=54.10 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=81.0
Q ss_pred eeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcC-hHH
Q 005679 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VAA 604 (683)
Q Consensus 526 ~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~~l 604 (683)
..|+|.||.|.++ ++ . ..+.-++++..+. .+.+|.-..|.|++.+++ +.-
T Consensus 2 ~~GvEeE~~l~d~---t~----~---------------l~~~a~~vl~~~~-------~~~~El~~~~IE~~T~~~~~~~ 52 (376)
T TIGR02048 2 TKGFEVEIYTGKP---TG----E---------------IVGLSDRIVRDLS-------GFVREPDSRNVEYTTPPLNSYD 52 (376)
T ss_pred CccEEEEEEEECC---Cc----C---------------ccccHHHHHHhcc-------CCccchhhcEEEecCCCcCCHH
Confidence 5799999999654 11 0 1123344544444 466688899999999996 788
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-e---EEeee-----cccC----------------CCCcccccCCCCCCCCCc--HHH
Q 005679 605 KAADNLIFTREVLRAVARKHGL-L---ATFVP-----NLWQ----------------NGENVFMASDSSSKHGMS--SVG 657 (683)
Q Consensus 605 ~aaD~~~~~k~~ik~vA~~~G~-~---ATFmp-----Kl~~----------------~g~N~f~~~~~~~~~~lS--~~~ 657 (683)
++.+++...|..+..+|.++|. . +.-+| +.|+ ...|+|. -+-|.|+. +.+
T Consensus 53 el~~~L~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~~~~~~~~i~G---~HVHVgv~d~d~a 129 (376)
T TIGR02048 53 RLLCGLLRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQTYGTQVVTAS---VHINIGIPDPEEL 129 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHHHhhhhheeeE---EEEEcCCCCHHHH
Confidence 8999999999999999999997 3 11122 1111 1112111 11122332 456
Q ss_pred HHHHHHHHHHHHHhHhhhcCCC
Q 005679 658 EKFMAGVLHHLSSILAFTAPVP 679 (683)
Q Consensus 658 ~~fiaGiL~h~~al~a~~~Pt~ 679 (683)
-..+..|.-++|-+.|+.+.++
T Consensus 130 v~v~n~lr~~LP~LlALSAsSP 151 (376)
T TIGR02048 130 MRACRLVRMEAPLFLALSASSP 151 (376)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc
Confidence 7788899999999999998775
No 46
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=93.68 E-value=1 Score=50.15 Aligned_cols=150 Identities=17% Similarity=-0.017 Sum_probs=84.1
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcH------HHHHHH--
Q 005679 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS------KEASYL-- 281 (683)
Q Consensus 210 ~l~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~------~e~~~l-- 281 (683)
...+..+..+++.++++|.++++|.-..+ .+.-..+..+++-.+..+.++.+.|.+.... .++..+
T Consensus 195 ~~~~~~l~~~~~~a~~~g~~v~~H~e~~~------~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~ 268 (415)
T cd01297 195 YAGTAELVALARVAARYGGVYQTHVRYEG------DSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIE 268 (415)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEECccc------ccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHH
Confidence 34566777788999999999999995321 1111123333332123478999999864332 122222
Q ss_pred -Hhh-CCeeEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcC-CCC
Q 005679 282 -AYV-YPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDE-DLS 358 (683)
Q Consensus 282 -a~~-~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g-~l~ 358 (683)
++. -.+|+.++....... ...++.+++. ...+.+||..+++..+ .... ..+..++..++.++ .++
T Consensus 269 ~a~~~G~~v~~e~~p~~~~~-----~~~~~~l~~~---~~~~i~SDh~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~ 336 (415)
T cd01297 269 AARAEGLQVTADVYPYGAGS-----EDDVRRIMAH---PVVMGGSDGGALGKPH-PRSY---GDFTRVLGHYVRERKLLS 336 (415)
T ss_pred HHHHhCCcEEEEeCCCCCCc-----HHHHHHHHcC---CCceeeeCCCcCCCCC-cchh---CCHHHHHHHHhcccCCCC
Confidence 222 247998877633211 2345555554 4667999975533001 1110 11344555555443 477
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCC
Q 005679 359 VGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 359 ~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+.+ +=+.+-.|++++|++.
T Consensus 337 ~~~----~~~~~t~~pA~~~gl~ 355 (415)
T cd01297 337 LEE----AVRKMTGLPARVFGLA 355 (415)
T ss_pred HHH----HHHHHHHHHHHHhCCC
Confidence 654 4555667888999985
No 47
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=93.56 E-value=1.3 Score=47.94 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhC-CeeEeccc
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFG 293 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~-pnVy~d~s 293 (683)
.+..+++.+.++|+||.+|.. ....+++ .+++++++.|.+.+...++...++.. -+|+.+++
T Consensus 116 ~l~~~~~~~~~~g~~v~~H~E--------------r~~~la~---~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ 178 (337)
T cd01302 116 TLMRTFLEIASRGGPVMVHAE--------------RAAQLAE---EAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVC 178 (337)
T ss_pred HHHHHHHHHHhcCCeEEEeHH--------------HHHHHHH---HhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcC
Confidence 344456777788999999987 2334555 47899999999865554444444333 26666665
Q ss_pred cccCCccH------------------HHHHHHHHHHHhhCCCCcEEEecCCCCCccc-------hh---hhHHHHHHHHH
Q 005679 294 LAIPKLSV------------------QGMISSIKELLELAPTKKVMFSTDAYASPET-------YF---LGAKRAREVVF 345 (683)
Q Consensus 294 ~~~~~~~~------------------~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~-------~~---~~~~~~r~~l~ 345 (683)
...-.++. ..-+..|.+.+..+-.+ +++||..++... +| .+.-.....+.
T Consensus 179 ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id--~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~~l~ 256 (337)
T cd01302 179 PHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGKID--TIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLP 256 (337)
T ss_pred hhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCC--EEecCCCCCCHHHhccCCCcccCCCCcccHHHHHH
Confidence 43211110 11223444444433223 689996544310 00 01001112233
Q ss_pred HHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 346 SVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 346 ~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
.++...++ +.+++.+ +-+.+..|++++||+.
T Consensus 257 ~~~~~~~~-~~i~~~~----~~~~~s~~pA~~~gl~ 287 (337)
T cd01302 257 ILLTEGVK-RGLSLET----LVEILSENPARIFGLY 287 (337)
T ss_pred HHHHHHHh-cCCCHHH----HHHHHHHHHHHHcCCC
Confidence 33333443 4577544 6677888999999984
No 48
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=93.54 E-value=0.47 Score=49.89 Aligned_cols=94 Identities=28% Similarity=0.367 Sum_probs=59.6
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCce-EEEecCCCCcHHHHHHHHhhCCeeEecccc
Q 005679 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCR-FVLLHASYPFSKEASYLAYVYPQVYLDFGL 294 (683)
Q Consensus 216 ~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~-~vl~H~g~p~~~e~~~la~~~pnVy~d~s~ 294 (683)
+..-+++|.+..+|+.+|.=.. .- .+-++++. ..|... =+.+|+=.....++..++... +|+++++
T Consensus 137 FekQl~LA~~~~~Pl~iH~r~a---------~~-d~~eIl~~-~~~~~~~~vvvHsFtGs~e~~~~~lk~~--~yig~~g 203 (296)
T KOG3020|consen 137 FEKQLDLAKRLKLPLFIHCRSA---------HE-DLLEILKR-FLPECHKKVVVHSFTGSAEEAQKLLKLG--LYIGFTG 203 (296)
T ss_pred HHHHHHHHHHccCCeeeechhh---------hH-HHHHHHHH-hccccCCceEEEeccCCHHHHHHHHHcc--EEecccc
Confidence 3334678889999999998431 11 12233331 112232 466787333455666777555 9999999
Q ss_pred ccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
++.... .-.+++...|.+|+|--||+++
T Consensus 204 ~~~k~~------e~~~vlr~iP~erlllETDsP~ 231 (296)
T KOG3020|consen 204 CSLKTE------ENLEVLRSIPLERLLLETDSPY 231 (296)
T ss_pred eeeech------hhHHHHhhCCHhHeeeccCCcc
Confidence 986442 2234555799999999999865
No 49
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=93.08 E-value=1.6 Score=49.00 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=63.4
Q ss_pred CCCCceEEEecCCCCcHHHHHHHHhhC-CeeEeccccccCCccHHH---------------------HHHHHHHHHhhCC
Q 005679 259 RFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQG---------------------MISSIKELLELAP 316 (683)
Q Consensus 259 ~~P~l~~vl~H~g~p~~~e~~~la~~~-pnVy~d~s~~~~~~~~~g---------------------~~~~l~~~le~~~ 316 (683)
++.+.++++.|.+.+...+....++.. .+|..+++......+.+. -+..+.++++.+
T Consensus 227 ~~~~~~~~~~H~s~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G- 305 (447)
T cd01314 227 ELAGAPLYIVHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSG- 305 (447)
T ss_pred HHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCC-
Confidence 477899999999876544444444333 356655555431111111 112333444422
Q ss_pred CCcEEEecCCCCCccchhhhHHHH---------------HHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 317 TKKVMFSTDAYASPETYFLGAKRA---------------REVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 317 ~~kilfgSD~~~~Pe~~~~~~~~~---------------r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
-....|||..++.. ..+.+ ...+.-++.+.+..+.+++.+ +-+.+..|.+++||+.
T Consensus 306 -~i~~igsDh~~~~~----~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~----~~~~~t~~pA~~~gl~ 376 (447)
T cd01314 306 -TLQTVGSDHCPFNF----AQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEK----FVELTSTNPAKIFGLY 376 (447)
T ss_pred -CeeEEECCCCCCCH----HHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHH----HHHHHhhHHHHHhCCC
Confidence 12348999644321 12211 122444555666677788754 6677889999999985
Q ss_pred CC
Q 005679 382 LG 383 (683)
Q Consensus 382 ~~ 383 (683)
..
T Consensus 377 ~~ 378 (447)
T cd01314 377 PR 378 (447)
T ss_pred CC
Confidence 43
No 50
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=92.19 E-value=0.16 Score=53.79 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=41.8
Q ss_pred eeEeeccCCCCceEEecCcC-hHHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 005679 582 VEQLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLAT 629 (683)
Q Consensus 582 ve~~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~AT 629 (683)
-..+++|-..+|.||+.+|. +.-++.+.+...+..+..+|+++|+...
T Consensus 34 ~~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~ 82 (288)
T PF04107_consen 34 GGRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLV 82 (288)
T ss_dssp SSEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CCceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 45899999999999999996 7888999999999999999999998754
No 51
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=92.06 E-value=0.5 Score=47.56 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC--CCCCCccchHH---HHhhcCCCCceEEEecCCCCcHHHHHHHH------h
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD--LRLSNPLHLRA---ILEDKRFSKCRFVLLHASYPFSKEASYLA------Y 283 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~--~~~~~p~~L~~---l~~~~~~P~l~~vl~H~g~p~~~e~~~la------~ 283 (683)
-++|+++..+|.|+|+.+|--. ++..| ...+.+.+|.. +.. |||++|||+-||-.-..-++..-+ +
T Consensus 118 ~fyPvf~aMqe~nm~LnvHGEv-pps~D~~Vf~aE~~Flptll~Lhq--rfP~LKivlEHcTt~dAv~~ve~a~~~sVaa 194 (344)
T KOG2902|consen 118 KFYPVFEAMQEQNMPLNVHGEV-PPSIDGHVFDAEKIFLPTLLQLHQ--RFPQLKIVLEHCTTMDAVNFVESAKEGSVAA 194 (344)
T ss_pred hhhHHHHHHHHcCceEEecCCC-CCccCCceecchhhhHHHHHHHHH--hCccceeHHHhcccHHHHHHHHhhcCCceee
Confidence 3578999999999999999765 33333 22344444333 455 899999999999421111111111 1
Q ss_pred h--CCeeEeccccccCC--c-cHH-----HHHHHHHHHHhhCCCCcEEEecCCCCCcc
Q 005679 284 V--YPQVYLDFGLAIPK--L-SVQ-----GMISSIKELLELAPTKKVMFSTDAYASPE 331 (683)
Q Consensus 284 ~--~pnVy~d~s~~~~~--~-~~~-----g~~~~l~~~le~~~~~kilfgSD~~~~Pe 331 (683)
. -.++|+..--|... . ..+ --++.|-++ ...+.-|+.||||+-++|.
T Consensus 195 TvTahHL~Lt~~dwqg~P~nfCkPVaK~e~dr~AlvkA-atSg~pkFFfGsDSAPHpr 251 (344)
T KOG2902|consen 195 TVTAHHLLLTRNDWQGQPHNFCKPVAKREIDREALVKA-ATSGSPKFFFGSDSAPHPR 251 (344)
T ss_pred EeehheeEEehhhhcCCCcccccccccCcccHHHHHHH-HhcCCCceeecCCCCCCcc
Confidence 0 02566655555421 0 011 111222222 1345678999999977774
No 52
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=91.95 E-value=1.2 Score=49.25 Aligned_cols=141 Identities=21% Similarity=0.274 Sum_probs=74.7
Q ss_pred CCc--EEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCC--cHHHHHHHHhhCCeeEeccccccCCcc--
Q 005679 227 DLP--LQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP--FSKEASYLAYVYPQVYLDFGLAIPKLS-- 300 (683)
Q Consensus 227 glp--vq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p--~~~e~~~la~~~pnVy~d~s~~~~~~~-- 300 (683)
|+| |.+|.|.++..++ .|.++++.+..|--.|.--|..-. -..+....++ ...++|+..-+....
T Consensus 188 ~~~g~~~vH~g~~~~~l~-------~l~~~~~~~di~~~~f~pth~~r~~~l~~~~i~~~~--~gg~iDv~~~~~~~~l~ 258 (389)
T TIGR01975 188 GKPGIVNFHVGDSKRALQ-------PIYELVENTDVPITQFLPTHINRNVPLFEAGLEFAK--KGGTIDLTSSIDPQFRK 258 (389)
T ss_pred CCCcEEEEEeCCchhhHH-------HHHHHHHhcCCChhheecCccCCCHHHHHHHHHHHH--hCCcEEEeCCCCccchh
Confidence 488 9999997643211 344556554555555555565321 1122333333 356677764322110
Q ss_pred -H-HHHHHHHHHHHhhC-CCCcEEEecCCCC-Cccchhh------hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHH
Q 005679 301 -V-QGMISSIKELLELA-PTKKVMFSTDAYA-SPETYFL------GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIF 370 (683)
Q Consensus 301 -~-~g~~~~l~~~le~~-~~~kilfgSD~~~-~Pe~~~~------~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~ 370 (683)
. ....+.++.+++.+ +.+|+.+|||+.. .|..... +.-.+ ..+-..+..++..+.++..+ +=+..
T Consensus 259 ~~~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~-~sl~~~~~~lv~~g~ls~~e----al~~~ 333 (389)
T TIGR01975 259 EGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSF-ETLFEEVREAVKDGDVPLEK----ALRVI 333 (389)
T ss_pred ccccChHHHHHHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCcH-HHHHHHHHHHHHhCCCCHHH----HHHHH
Confidence 0 01123667777765 5689999999753 3421000 00000 01223344556667788755 45566
Q ss_pred HHHHHHHhcCC
Q 005679 371 ALNAAQFYKIN 381 (683)
Q Consensus 371 ~~NA~rly~l~ 381 (683)
-.|++++++++
T Consensus 334 T~npA~~Lgl~ 344 (389)
T TIGR01975 334 TSNVAGVLNLT 344 (389)
T ss_pred HHHHHHHhCCC
Confidence 78999999986
No 53
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=91.74 E-value=2.4 Score=45.35 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccch--hhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHH
Q 005679 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPETY--FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (683)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~--~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rl 377 (683)
+.+.+.+.+..+.+++|.+.|.+|||.-..+... +.....+ .++..++++.| ++. +.+++|+++|+.|+
T Consensus 239 ~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~----~~l~~~L~~rG-~s~----~~i~~i~g~N~lRv 309 (309)
T cd01301 239 TLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSDL----PNLTAELLERG-YSE----EEIEKIAGGNFLRV 309 (309)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCccccCCHHHH----HHHHHHHHHcC-CCH----HHHHHHHhhchhcC
Confidence 3456778999999999999999999954432210 1112222 23334444444 443 55999999999874
No 54
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=91.03 E-value=1.1 Score=48.05 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccc--hhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHH
Q 005679 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (683)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~--~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rl 377 (683)
+.+.+.+.+..+.+++|.+.|-+|||.-+.+.. -......+. ++..++.++| ++. +.+++|+++|+.|+
T Consensus 247 ~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~----~l~~~L~~rG-~s~----~~i~kI~g~N~lRv 317 (320)
T PF01244_consen 247 SLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEGLEDPSDLP----NLTEELLKRG-YSE----EDIEKILGGNFLRV 317 (320)
T ss_dssp BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBTBSSGGGHH----HHHHHHHHTT-S-H----HHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCccCCHHHHH----HHHHHHHHCC-CCH----HHHHHHHhHhHHHH
Confidence 355677788999999999999999995333210 011122222 2233333333 443 66999999999999
Q ss_pred hc
Q 005679 378 YK 379 (683)
Q Consensus 378 y~ 379 (683)
++
T Consensus 318 ~~ 319 (320)
T PF01244_consen 318 LR 319 (320)
T ss_dssp HH
T ss_pred hc
Confidence 84
No 55
>PRK09357 pyrC dihydroorotase; Validated
Probab=89.50 E-value=3.5 Score=45.88 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC--C-------CCCCC---CCCcc-----chHHHHhhcCCCCceEEEecCCCCcHHH
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGD--K-------DLDLR---LSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd--~-------~~~~~---~~~p~-----~L~~l~~~~~~P~l~~vl~H~g~p~~~e 277 (683)
.+..+++.++++|+|+.+|..-.. . +.... ...|. .+..++.--+.-++++.+.|.+.+...+
T Consensus 160 ~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~~~~~ 239 (423)
T PRK09357 160 LMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVE 239 (423)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHH
Confidence 445567889999999999997521 0 00000 11122 1222211112335999999998766555
Q ss_pred HHHHHhhC-CeeEecccccc------------------CCc-cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccc-----
Q 005679 278 ASYLAYVY-PQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPET----- 332 (683)
Q Consensus 278 ~~~la~~~-pnVy~d~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~----- 332 (683)
+...+... -+|+.+++..+ |-. ++.+ ...|.++++.+ ....+|||..++...
T Consensus 240 ~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~-~~~l~~~l~~G--~~~~i~sDh~p~~~~~k~~~ 316 (423)
T PRK09357 240 LIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEED-REALIEGLKDG--TIDAIATDHAPHAREEKECE 316 (423)
T ss_pred HHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHH-HHHHHHHHHcC--CCeEEecCCCCCChHHccCC
Confidence 55555433 25666655521 101 1112 23455555533 233699996443311
Q ss_pred hh---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005679 333 YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (683)
Q Consensus 333 ~~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~~ 382 (683)
++ .+--.+...+..++...+.++.+++++ +-+.+..|++++++++.
T Consensus 317 ~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~----~~~~~t~~~A~~~g~~~ 365 (423)
T PRK09357 317 FEAAPFGITGLETALSLLYTTLVKTGLLDLEQ----LLEKMTINPARILGLPA 365 (423)
T ss_pred HhhCCCCceEHHHHHHHHHHHHHHcCCCCHHH----HHHHHhHHHHHHhCCCC
Confidence 00 000002222333445566677788754 56667799999999853
No 56
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=89.12 E-value=0.86 Score=48.49 Aligned_cols=87 Identities=28% Similarity=0.308 Sum_probs=62.0
Q ss_pred ccCCCCceEEecCcCh-HHHHHHHHHHHHHHHHHHHHHcCCeEEee---ec----------------c------cC----
Q 005679 587 AEAGKGQFEIALGHTV-AAKAADNLIFTREVLRAVARKHGLLATFV---PN----------------L------WQ---- 636 (683)
Q Consensus 587 ~E~~pGQ~Ei~l~~~~-~l~aaD~~~~~k~~ik~vA~~~G~~ATFm---pK----------------l------~~---- 636 (683)
+|.--.+-|+..+.++ .-+|+=.+=..|..+++.|..||++..=- |- + |.
T Consensus 43 ~e~~e~~vE~~t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfadw~~~~~~~~prY~~~ie~~~y~~~q~~ 122 (369)
T COG2170 43 HEITESTVELATGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFADWRRQEVPDNPRYQRLIERTGYLGRQMT 122 (369)
T ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHhhhcCceecccCCCchhhhhhccCCCChhHHHHHHHhhhHHhhee
Confidence 5666667788888874 44577778888999999999999986532 22 0 10
Q ss_pred -CCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhHhhhcCCC
Q 005679 637 -NGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 679 (683)
Q Consensus 637 -~g~N~f~~~~~~~~~~lS~~~~~fiaGiL~h~~al~a~~~Pt~ 679 (683)
-|.+++.++++ ++..-+.+-+|+.++|-+.|+.|.++
T Consensus 123 v~G~HVHVGi~~------~d~~~~~l~~l~~~~PhlLALSASSP 160 (369)
T COG2170 123 VAGQHVHVGIPS------PDDAMYLLHRLLRYVPHLLALSASSP 160 (369)
T ss_pred eeeEEEEecCCC------HHHHHHHHHHHHhhhhHHHhhhcCCc
Confidence 14555554431 34567889999999999999998875
No 57
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=89.10 E-value=5.2 Score=43.13 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=66.2
Q ss_pred HHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCc----H-------HHHHHHHhhCC
Q 005679 218 SSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF----S-------KEASYLAYVYP 286 (683)
Q Consensus 218 ~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~----~-------~e~~~la~~~p 286 (683)
...+++.++|+|+.+|++.+.. ....+..+++ ++ .++.|+-... . ..+..+ .-.
T Consensus 153 ~~~~~a~~~~~pi~vH~~~~~~-------~~~~~~~~l~----~g--~~~~H~~~g~~~~~~~~~~~~~~~~~~~--~~~ 217 (338)
T cd01307 153 LAKKIAKEADLPLMVHIGSPPP-------ILDEVVPLLR----RG--DVLTHCFNGKPNGIVDEEGEVLPLVRRA--RER 217 (338)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-------CHHHHHHHhc----CC--CEEEeccCCCCCCCCCCCCcHHHHHHHH--HhC
Confidence 3467788999999999986532 1222333333 12 3677773211 1 112222 235
Q ss_pred eeEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHH
Q 005679 287 QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (683)
Q Consensus 287 nVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~ 366 (683)
++|+|++.-....+ .+..+++++...... +.+||...--....+.. .+.. ++.... ...++. +.+
T Consensus 218 G~~~d~~~G~~~~~----~~~~~~l~~~G~~~~-~lstD~~~~~~~~~p~~-~l~~----~l~~l~-~~gi~~----ee~ 282 (338)
T cd01307 218 GVIFDVGHGTASFS----FRVARAAIAAGLLPD-TISSDIHGRNRTNGPVY-ALAT----TLSKLL-ALGMPL----EEV 282 (338)
T ss_pred CEEEEeCCCCCchh----HHHHHHHHHCCCCCe-eecCCccccCCCCCccc-cHHH----HHHHHH-HcCCCH----HHH
Confidence 89999773210111 123344455433233 36999632000000011 0111 222221 124555 558
Q ss_pred HHHHHHHHHHHhcCC
Q 005679 367 KDIFALNAAQFYKIN 381 (683)
Q Consensus 367 ~~I~~~NA~rly~l~ 381 (683)
.++...|++++|+++
T Consensus 283 ~~~~T~NpA~~lgl~ 297 (338)
T cd01307 283 IEAVTANPARMLGLA 297 (338)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999984
No 58
>PLN02942 dihydropyrimidinase
Probab=88.47 E-value=9.5 Score=43.48 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC--------------CCCCC-CCCCccc-----hHHHHhhcCCCCceEEEecCCCCc
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGD--------------KDLDL-RLSNPLH-----LRAILEDKRFSKCRFVLLHASYPF 274 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd--------------~~~~~-~~~~p~~-----L~~l~~~~~~P~l~~vl~H~g~p~ 274 (683)
.+..+++.++++|+++.+|.-..+ .+... ..+.|.. +..++.--++-+.++++.|++...
T Consensus 168 ~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~s~~~ 247 (486)
T PLN02942 168 LLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMSID 247 (486)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 344456778888888888853210 01000 0123421 222221112457899999998766
Q ss_pred HHHHHHHHhhC-CeeEecccccc----------------------CCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCcc
Q 005679 275 SKEASYLAYVY-PQVYLDFGLAI----------------------PKLSVQGMISSIKELLELAPTKKVMFSTDAYASPE 331 (683)
Q Consensus 275 ~~e~~~la~~~-pnVy~d~s~~~----------------------~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe 331 (683)
.-+....++.. -+|..+++... |-+.....+..|.+.++.+ -...+|||..++..
T Consensus 248 ~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G--~i~~igTDh~p~~~ 325 (486)
T PLN02942 248 AMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSG--ILQLVGTDHCPFNS 325 (486)
T ss_pred HHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCC--ceEEEECCCCCCCh
Confidence 53444444433 35666555311 1111112233444444432 35569999643321
Q ss_pred chhhhHHHH---------------HHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005679 332 TYFLGAKRA---------------REVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (683)
Q Consensus 332 ~~~~~~~~~---------------r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~~ 382 (683)
..+.+ ...+..++...+..+.++..+ +-+++-.|.++++|+..
T Consensus 326 ----~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~----~l~~~t~~pA~~lgl~~ 383 (486)
T PLN02942 326 ----TQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTD----YVRVTSTECAKIFNIYP 383 (486)
T ss_pred ----HHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHhCCCC
Confidence 11110 112333344456667788754 66677889999999853
No 59
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=88.25 E-value=5 Score=43.76 Aligned_cols=142 Identities=20% Similarity=0.139 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEec
Q 005679 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (683)
Q Consensus 212 ~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d 291 (683)
.+..+..+++.+... +||.+|+...+ +...+-.+++ +| ++++++.|+..- ...+..|+. .|+++.
T Consensus 178 ~d~~l~~l~~~~~~~-~~v~vHa~~~~--------~i~~~l~~~~--e~-g~~~~i~H~~~~-~~~~~~la~--~gv~v~ 242 (359)
T cd01309 178 RDLKLEALLPVLKGE-IPVRIHAHRAD--------DILTAIRIAK--EF-GIKITIEHGAEG-YKLADELAK--HGIPVI 242 (359)
T ss_pred CCccHHHHHHHHcCC-eeEEEEeCCHH--------HHHHHHHHHH--Hc-CCCEEEECchhH-HHHHHHHHH--cCCCEE
Confidence 445566677666644 99999986311 1223334444 45 678999999653 333444443 356555
Q ss_pred cccccCCccH-HH---HHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHH
Q 005679 292 FGLAIPKLSV-QG---MISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (683)
Q Consensus 292 ~s~~~~~~~~-~g---~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~ 367 (683)
++..++.... +. ....+.++++..+ =++.+|||.++.|. ..+...+ ...+.. .++.. .+-
T Consensus 243 ~~P~~~~~~~~~~~~~~~~~~~~l~~aGG-v~valgsD~~~~~~------~~l~~~~----~~a~~~-gl~~~----~al 306 (359)
T cd01309 243 YGPTLTLPKKVEEVNDAIDTNAYLLKKGG-VAFAISSDHPVLNI------RNLNLEA----AKAVKY-GLSYE----EAL 306 (359)
T ss_pred ECccccccccHHHhhcchhhHHHHHHcCC-ceEEEECCCCCccc------hhHHHHH----HHHHHc-CCCHH----HHH
Confidence 4432221111 01 1123445555443 46889999643332 1111111 111222 35543 355
Q ss_pred HHHHHHHHHHhcCCCCc
Q 005679 368 DIFALNAAQFYKINLGV 384 (683)
Q Consensus 368 ~I~~~NA~rly~l~~~~ 384 (683)
+.+-.|++++++++...
T Consensus 307 ~~~T~n~A~~lg~~~~~ 323 (359)
T cd01309 307 KAITINPAKILGIEDRV 323 (359)
T ss_pred HHHHHHHHHHhCCCCCc
Confidence 55678999999987543
No 60
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=87.68 E-value=3 Score=45.70 Aligned_cols=44 Identities=27% Similarity=0.276 Sum_probs=37.6
Q ss_pred EeeccCCCCceEEecCcC-hHHHHHHHHHHHHHHHHHHHHHcCCeE
Q 005679 584 QLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLA 628 (683)
Q Consensus 584 ~~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~A 628 (683)
.+-=| -.||+|++..|. +.-++++.+...+..++++|+++|+..
T Consensus 63 ~iTlE-PGgQvELSt~P~~sl~el~~el~~~l~~l~~~a~~~Gl~l 107 (390)
T TIGR03444 63 RITVE-PGGQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLAL 107 (390)
T ss_pred eEEeC-CCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 33335 358999999997 788899999999999999999999964
No 61
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=87.37 E-value=3.7 Score=43.14 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=76.3
Q ss_pred HHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHH---HHHhhCCeeEeccccc
Q 005679 219 SLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEAS---YLAYVYPQVYLDFGLA 295 (683)
Q Consensus 219 l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~---~la~~~pnVy~d~s~~ 295 (683)
+.+...+.|.|+..||-.|-. -...++-+.+. .-+=-++++.||+ |...... .|+..=--+-+|.=+.
T Consensus 157 aA~A~~~Tg~Pi~tHt~~gt~-------g~eq~~il~~e-gvdl~~v~igH~d-~n~dd~~y~~~l~~~Ga~l~fD~iG~ 227 (316)
T COG1735 157 AARAHKETGAPISTHTPAGTM-------GLEQLRILAEE-GVDLRKVSIGHMD-PNTDDVYYQKKLADRGAFLEFDRIGK 227 (316)
T ss_pred HHHHhhhcCCCeEEeccchhh-------hHHHHHHHHHc-CCChhHeeEeccC-CCCChHHHHHHHHhcCceEEecccCc
Confidence 445566889999999976621 12245444544 3445689999995 2111112 2221111233444333
Q ss_pred cCCccHHHHHHHHHHHHhhCCCCcEEEe-cCCCC---Cccc-hhhhHHH--HHHHHHHHHHhhhhcCCCChhHHHHHHHH
Q 005679 296 IPKLSVQGMISSIKELLELAPTKKVMFS-TDAYA---SPET-YFLGAKR--AREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (683)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfg-SD~~~---~Pe~-~~~~~~~--~r~~l~~~l~~~v~~g~l~~~ea~~~~~~ 368 (683)
..+.+...-...+.++++.+-.++|+.| .|... .+.. .+.+... +--++.+++..+-+.| + +| +.+++
T Consensus 228 d~y~pd~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~~~~~~~~~~~~g~~~I~~~fIP~Lk~~G-v--de--~~i~~ 302 (316)
T COG1735 228 DKYYPDEDRIAPLLELVARGYADLILLSHDDICLSDDVFLKSMLKANGGWGYGYILNDFIPRLKRHG-V--DE--ETIDT 302 (316)
T ss_pred cccCcHHHhhhhHHHHHHhhHhhheecccchhhhhhhHHHHhhhhhcCCcccchhhHhhHHHHHHcC-C--CH--HHHHH
Confidence 3222222323466667777777888888 22100 1110 1111110 0112334444443333 3 35 78999
Q ss_pred HHHHHHHHHhcCC
Q 005679 369 IFALNAAQFYKIN 381 (683)
Q Consensus 369 I~~~NA~rly~l~ 381 (683)
+|-+|.+|+|..+
T Consensus 303 mlvdNP~r~f~~~ 315 (316)
T COG1735 303 MLVDNPARLFTAK 315 (316)
T ss_pred HHhhCHHHHhccC
Confidence 9999999999753
No 62
>PLN02795 allantoinase
Probab=86.84 E-value=14 Score=42.49 Aligned_cols=157 Identities=17% Similarity=0.063 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCC---------CC-C---CCCCCcc-----c---hHHHHhh----cCCCCceEEEe
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGFGDK---------DL-D---LRLSNPL-----H---LRAILED----KRFSKCRFVLL 268 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~Gd~---------~~-~---~~~~~p~-----~---L~~l~~~----~~~P~l~~vl~ 268 (683)
..+..+++.++++|+||.+|.-..+- +. + ...+.|. . +-.+++. ++-|+.++.+.
T Consensus 212 ~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~ 291 (505)
T PLN02795 212 THIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIV 291 (505)
T ss_pred HHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEE
Confidence 45556778899999999999855220 00 0 0112232 1 2233331 24479999999
Q ss_pred cCCCC-cHHHHHHHHhhCC-eeEeccccccCCc--------------cH----HHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 269 HASYP-FSKEASYLAYVYP-QVYLDFGLAIPKL--------------SV----QGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 269 H~g~p-~~~e~~~la~~~p-nVy~d~s~~~~~~--------------~~----~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
|.+.+ ...++...++.-. +|+++++..+-.+ +| ..-+..|-+.+.-+-++ +.+||--+
T Consensus 292 HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id--~i~sDHap 369 (505)
T PLN02795 292 HLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDID--MLSSDHSP 369 (505)
T ss_pred ECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCce--EEecCCCC
Confidence 99876 5555555554433 6888776532111 00 11233455555544444 68999644
Q ss_pred CccchhhhHHH-----HH----------HHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 329 SPETYFLGAKR-----AR----------EVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 329 ~Pe~~~~~~~~-----~r----------~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+.. ..|. |. ..+--++...++ +.+++.+ +-+++..|.+++||++
T Consensus 370 ~~~----~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~~-~~l~l~~----~v~~~s~~pA~~~gl~ 428 (505)
T PLN02795 370 SPP----DLKLLEEGNFLRAWGGISSLQFVLPATWTAGRA-YGLTLEQ----LARWWSERPAKLAGLD 428 (505)
T ss_pred CCh----HHhccCcCCHhhCCCCceeHHHHHHHHHHHHHH-cCCCHHH----HHHHHHHHHHHHhCCC
Confidence 421 1111 11 223334444453 4477754 6778889999999993
No 63
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=84.89 E-value=10 Score=42.54 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCC--------------CCCCC-CCCCcc-----chHHHHhhcCCCCceEEEecCCC
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASY 272 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~Gd--------------~~~~~-~~~~p~-----~L~~l~~~~~~P~l~~vl~H~g~ 272 (683)
+..+..+++.|+++|+||.+|++..+ .+... ....|. .+..++.-.+.-++++.+.|.+.
T Consensus 161 ~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~s~ 240 (447)
T cd01315 161 DEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHLSS 240 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 33566678889999999999987521 00100 011221 23333221123469999999976
Q ss_pred CcHHHHHHHHhh-CCeeEeccccccCCc-------------------cHHHHHHHHHHHHhhCCCCcEEEecCCCCCcc-
Q 005679 273 PFSKEASYLAYV-YPQVYLDFGLAIPKL-------------------SVQGMISSIKELLELAPTKKVMFSTDAYASPE- 331 (683)
Q Consensus 273 p~~~e~~~la~~-~pnVy~d~s~~~~~~-------------------~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe- 331 (683)
+..-++...++. -.+|+++++...... +... +..+-+.+... ...+.|||..++..
T Consensus 241 ~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~-~~~l~~~l~~g--~i~~i~SDh~p~~~~ 317 (447)
T cd01315 241 AEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAAN-QEQLWEALENG--DIDMVVSDHSPCTPE 317 (447)
T ss_pred HHHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHH-HHHHHHHHhCC--ceeEEeCCCCCCCHH
Confidence 554444443332 346666655321111 1111 12222333211 23459999543320
Q ss_pred -------chhh---hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 332 -------TYFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 332 -------~~~~---~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
.++. +.-.....+-.++...++++.+++.+ +-+.+-.|++++++++
T Consensus 318 ~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~t~~pa~~~g~~ 373 (447)
T cd01315 318 LKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLED----IARLMCENPAKLFGLS 373 (447)
T ss_pred HhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHH----HHHHHhHHHHHHhCCC
Confidence 0000 00001122333444556677888754 5666778999999986
No 64
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=84.28 E-value=15 Score=40.77 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCC-----------CCCCC-CCCCcc-----chHHHHhhcCCCCceEEEecCCCCcH
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGFGD-----------KDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFS 275 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~Gd-----------~~~~~-~~~~p~-----~L~~l~~~~~~P~l~~vl~H~g~p~~ 275 (683)
+..+..+++.++++|+|+.+|.--.. .+... ..+.|. .+..++.--+.-++++++.|.+.+..
T Consensus 146 ~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~ 225 (411)
T TIGR00857 146 ILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKES 225 (411)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHH
Confidence 33455667888899999999974311 01110 122342 22222221134589999999987555
Q ss_pred HHHHHHHhhCC-eeEeccccccCCccH------------------HHHHHHHHHHHhhCCCCcEEEecCCCCCccc----
Q 005679 276 KEASYLAYVYP-QVYLDFGLAIPKLSV------------------QGMISSIKELLELAPTKKVMFSTDAYASPET---- 332 (683)
Q Consensus 276 ~e~~~la~~~p-nVy~d~s~~~~~~~~------------------~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~---- 332 (683)
-++...++... +|+.+++..+-..+. ..-+..|-+.+..+..+ +.+||-.++...
T Consensus 226 l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~--~i~sDh~p~~~~~k~~ 303 (411)
T TIGR00857 226 LELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIID--IIATDHAPHTLEEKTK 303 (411)
T ss_pred HHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCc--EEEcCCCCCChHHccC
Confidence 45454444432 688777653211110 01112344444433333 689995443210
Q ss_pred -h---hhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 333 -Y---FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 333 -~---~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+ +.+.......+..++ ..+.++.+++.+ +-+.+..|.+++++++
T Consensus 304 ~~~~~~~G~~g~e~~~~~~~-~~~~~~~~~~~~----~~~~~t~~pa~~~g~~ 351 (411)
T TIGR00857 304 EFAAAPPGIPGLETALPLLL-QLLVKGLISLKD----LIRMLSINPARIFGLP 351 (411)
T ss_pred CHhhCCCCceeHHHHHHHHH-HHHHhCCCCHHH----HHHHHhHHHHHHhCCC
Confidence 0 011111112232233 344455677644 4555668888999985
No 65
>PRK07369 dihydroorotase; Provisional
Probab=82.11 E-value=14 Score=41.24 Aligned_cols=161 Identities=16% Similarity=0.036 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC---C-----C---CCC-CCCCcc-----chHHHHhhcCCCCceEEEecCCCCcHHH
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGD---K-----D---LDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd---~-----~---~~~-~~~~p~-----~L~~l~~~~~~P~l~~vl~H~g~p~~~e 277 (683)
.+..+++.++++|.++.+|.--.. . + ... ..+.|. .+..++.--+.-++++++.|.+.+..-+
T Consensus 163 ~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~ 242 (418)
T PRK07369 163 LLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRISTARSVE 242 (418)
T ss_pred HHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHH
Confidence 344556777788999999984311 0 0 000 112232 1222222112448999999998765555
Q ss_pred HHHHHhhCC-eeEeccccccCCccH------------------HHHHHHHHHHHhhCCCCcEEEecCCCCCccc-----h
Q 005679 278 ASYLAYVYP-QVYLDFGLAIPKLSV------------------QGMISSIKELLELAPTKKVMFSTDAYASPET-----Y 333 (683)
Q Consensus 278 ~~~la~~~p-nVy~d~s~~~~~~~~------------------~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~-----~ 333 (683)
+..-++... +|+++++.++-.++. ..-+..|-+.+.-+-.+ +.+||--++... +
T Consensus 243 ~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id--~i~SDHaP~~~~~K~~~~ 320 (418)
T PRK07369 243 LIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVID--AIAIDHAPYTYEEKTVAF 320 (418)
T ss_pred HHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCC--EEEcCCCCCCHHHccCCH
Confidence 555454433 788888765422111 01123444444444444 689995433210 0
Q ss_pred h---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 334 F---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 334 ~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
| .+.-.....|..++...+..+.+++.+ +-+.+..|++|+||+.
T Consensus 321 ~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~----~v~~~s~nPA~~lgl~ 367 (418)
T PRK07369 321 AEAPPGAIGLELALPLLWQNLVETGELSALQ----LWQALSTNPARCLGQE 367 (418)
T ss_pred hHCCCCceeHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHhHHHHhCCC
Confidence 0 000011223444555677778888754 6677889999999995
No 66
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=80.41 E-value=63 Score=34.50 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHhhCCCcEEEecC
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTG 235 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G 235 (683)
+-.+..+++.|.++|+++.+|..
T Consensus 159 ~e~l~~~~~~A~~~g~~v~~H~~ 181 (342)
T cd01299 159 EEELRAIVDEAHKAGLYVAAHAY 181 (342)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeC
Confidence 34455678899999999999986
No 67
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=80.00 E-value=10 Score=33.40 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHhcCCeeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCCceeEe
Q 005679 506 PREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQL 585 (683)
Q Consensus 506 PR~~L~r~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~~ 585 (683)
|...-+++++.++ +.|..+..-.++||++.-+. ..-++.+...+.+.|..|+..
T Consensus 2 ~~~~n~~vl~~L~-~~Gddl~~~r~ieh~~~f~~-------------------------~~~~~~f~~~~~~~g~~v~~~ 55 (104)
T PF06877_consen 2 QIIENREVLEALE-EDGDDLSKPRPIEHWFYFED-------------------------EEDAEKFAEELEKLGYEVESA 55 (104)
T ss_dssp HHHHHHHHHHHHH-HHT--TTS-EEEEEEEEES--------------------------HHHHHHHHHHHHHHS---B--
T ss_pred cHHHHHHHHHHHH-hcCCCCCCCeEEEEEEEeCC-------------------------HHHHHHHHHHHHHCCCEEEEe
Confidence 3455678888898 46999999999999987541 245677888999999999987
Q ss_pred ec--cCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCe
Q 005679 586 HA--EAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLL 627 (683)
Q Consensus 586 h~--E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ 627 (683)
.. |-+.+.|.+.+.....+. .+.+...-.-+-.+|+++|..
T Consensus 56 ~~~~~d~~~~~~~~~~~~~~~~-~~~I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 56 EEDEEDGDGPYCLDISREMVLD-YEDINAITQELEDLAKEFGGE 98 (104)
T ss_dssp --B-SS-SSBEEEEEEEEE-S--HHHHHHHHHHHHHHHHHHT-E
T ss_pred ecccCCCCceEEEEEEEecCCC-HHHHHHHHHHHHHHHHHhCcE
Confidence 75 678899999998877663 344555555666788887754
No 68
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=79.56 E-value=23 Score=38.76 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=24.4
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+..++...++.+.++..+ +-+.+..|+++++|+.
T Consensus 292 l~~~~~~~~~~~~~~~~~----~~~~~t~npA~~lgl~ 325 (374)
T cd01317 292 LPLLWTLLVKGGLLTLPD----LIRALSTNPAKILGLP 325 (374)
T ss_pred HHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHhCCC
Confidence 334445556667788754 6677789999999985
No 69
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=78.50 E-value=24 Score=38.95 Aligned_cols=108 Identities=18% Similarity=0.082 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhC-CCcEEEecCCCCCCCCC---CC-CCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeE
Q 005679 215 IFISSLEVAQFL-DLPLQIHTGFGDKDLDL---RL-SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (683)
Q Consensus 215 ~~~~l~e~a~e~-glpvq~H~G~Gd~~~~~---~~-~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy 289 (683)
.+..+.+.|.++ |+|+.+|..-+....+. .+ ..|..++.+.+. .+-+.++++.|+.+--..++..++.. +++
T Consensus 187 ~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~-g~lg~~~~~~H~~~~~~~~~~~l~~~--g~~ 263 (401)
T TIGR02967 187 QLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHY-GLLGRRSVFAHCIHLSDEECQRLAET--GAA 263 (401)
T ss_pred HHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHC-CCCCCCeEEEecccCCHHHHHHHHHc--CCe
Confidence 444567888999 99999999754221110 00 111123333332 34467889999965444444455543 333
Q ss_pred eccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
+..+...+.....| ..-++++++. + -++.+|||+..
T Consensus 264 v~~~P~~~~~~~~g-~~~~~~~~~~-G-v~v~lGtD~~~ 299 (401)
T TIGR02967 264 IAHCPTSNLFLGSG-LFNLKKALEH-G-VRVGLGTDVGG 299 (401)
T ss_pred EEEChHHHHHhccC-CCCHHHHHHC-C-CeEEEecCCCC
Confidence 32221110000001 1134555554 4 38999999643
No 70
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=78.32 E-value=2.9 Score=37.60 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=26.5
Q ss_pred eeeeeeeccccCCCCCCCCCHHHHHHHHHH-HHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCCC
Q 005679 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAE-DLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (683)
Q Consensus 167 vgfksi~~y~~gl~~~~~~~~~ea~~~~~~-~l~~~~~~~~~~~~l~d~~~~~l~e~a~e~glpvq~H~G~G 237 (683)
.|||+|+|-|..-+-+..++.++.+++.++ .|.- ....+....+..-.+..+.+...+...||.+|+..|
T Consensus 26 ~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y-~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 26 QGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQY-VHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp CT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EE-EE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCS
T ss_pred CCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeE-EEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 399999999965443222333322222211 1110 001112222333333334455556667777777765
No 71
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=76.28 E-value=25 Score=40.60 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=36.8
Q ss_pred CCcEEEecCCCC------Cccc-hhhhHHHHHHHHHHHHHhhhh--------cCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 317 TKKVMFSTDAYA------SPET-YFLGAKRAREVVFSVLRDTCI--------DEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 317 ~~kilfgSD~~~------~Pe~-~~~~~~~~r~~l~~~l~~~v~--------~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+.|+++.||.+. ||.. .|+-++.+|+..-.-+-.++. +.++++. .+-++...|+++.+|+.
T Consensus 375 p~~~~~ttDhPnggpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL~----EI~~mtTanPAkaLGL~ 450 (556)
T TIGR03121 375 PWRVFLTTDHPNGGPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSLY----EIAIMTRAGPAKLLGLT 450 (556)
T ss_pred cceeEEeccCCCCCcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 379999999654 4443 244455566543211233332 2345554 36777889999999995
No 72
>PRK08323 phenylhydantoinase; Validated
Probab=75.97 E-value=27 Score=39.26 Aligned_cols=33 Identities=6% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 345 FSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 345 ~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
..++...+..+.+++.+ +-+.+..|.++++|+.
T Consensus 344 ~~l~~~~~~~~~~~~~~----~~~~~t~~pA~~lgl~ 376 (459)
T PRK08323 344 PLLFSEGVMTGRITLNR----FVELTSTNPAKIFGLY 376 (459)
T ss_pred HHHHHHHHHcCCCCHHH----HHHHHhhHHHHHhCCC
Confidence 33444556667788754 5666789999999984
No 73
>PRK09228 guanine deaminase; Provisional
Probab=75.11 E-value=51 Score=36.94 Aligned_cols=108 Identities=15% Similarity=-0.015 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhC-CCcEEEecCCCCCCCCC---CCC-CccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCee
Q 005679 214 YIFISSLEVAQFL-DLPLQIHTGFGDKDLDL---RLS-NPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (683)
Q Consensus 214 ~~~~~l~e~a~e~-glpvq~H~G~Gd~~~~~---~~~-~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnV 288 (683)
-.+..+.+.|+++ |+|+++|..-+..+... .+. .|..++.+.+- .+-+-++++.|+.+--..++..|+..--+|
T Consensus 211 ~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~-G~l~~~~~~~H~~~l~~~~~~~la~~g~~v 289 (433)
T PRK09228 211 EQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERY-GLLGPRAVFAHCIHLEDRERRRLAETGAAI 289 (433)
T ss_pred HHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHc-CCCCCCeEEEeccCCCHHHHHHHHHcCCeE
Confidence 3455678889998 99999999875322110 011 12123323322 233568999999765555556666543233
Q ss_pred EeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 289 y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
-..... +.....| ..-++++++.+ -++.+|||+.
T Consensus 290 ~~~P~s--n~~lg~g-~~~~~~~~~~G--v~v~lGtD~~ 323 (433)
T PRK09228 290 AFCPTS--NLFLGSG-LFDLKRADAAG--VRVGLGTDVG 323 (433)
T ss_pred EECCcc--HHhhcCC-CcCHHHHHHCC--CeEEEecCCC
Confidence 222211 1100001 11344555543 4788999964
No 74
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=74.01 E-value=6.6 Score=32.48 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCceeEeeccCCC------CceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeee
Q 005679 566 PVFQEVLADLHSLNISVEQLHAEAGK------GQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E~~p------GQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmp 632 (683)
.++.+|...|.+.|+.|..+..+.-+ ++|.+.+.-.-| ... +.-.++.-++.+|++.|+..+|-|
T Consensus 11 Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~-~~~~l~~~l~~l~~~~~~~~~~~~ 81 (81)
T cd04869 11 GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGT-DLDALREELEELCDDLNVDISLEP 81 (81)
T ss_pred CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCC-CHHHHHHHHHHHHHHhcceEEecC
Confidence 47888999999999999999776655 777554433322 111 256788889999999999988854
No 75
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=73.86 E-value=59 Score=36.32 Aligned_cols=105 Identities=17% Similarity=0.065 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhCC-CcEEEecCCCCCCCCC---CC---CCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCe
Q 005679 215 IFISSLEVAQFLD-LPLQIHTGFGDKDLDL---RL---SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (683)
Q Consensus 215 ~~~~l~e~a~e~g-lpvq~H~G~Gd~~~~~---~~---~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pn 287 (683)
.+..+.+.|.++| +++++|..-+...... .+ ..| ++.+.+- .+-+.++++.|+.+--..++..++..--+
T Consensus 209 ~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p--~~~l~~~-G~l~~~~~l~H~~~l~~~~~~~l~~~g~~ 285 (429)
T cd01303 209 LLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDY--LDVYDKY-GLLTEKTVLAHCVHLSEEEFNLLKERGAS 285 (429)
T ss_pred HHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCH--HHHHHHC-CCCCCCcEEEeCCCCCHHHHHHHHHcCCE
Confidence 4455678889999 9999999654211100 00 112 2222221 23356899999976444555555544333
Q ss_pred eEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 288 Vy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
|...... +.....| ..-++++++.+ -++.+|||+.
T Consensus 286 v~~~P~s--n~~l~~g-~~~~~~~~~~G--v~v~lGtD~~ 320 (429)
T cd01303 286 VAHCPTS--NLFLGSG-LFDVRKLLDAG--IKVGLGTDVG 320 (429)
T ss_pred EEECccc--hhhhccC-CCCHHHHHHCC--CeEEEeccCC
Confidence 3332221 1000001 11345555543 3578999974
No 76
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=72.99 E-value=37 Score=37.13 Aligned_cols=141 Identities=24% Similarity=0.263 Sum_probs=67.6
Q ss_pred cEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCC--cHHHHHHHHhhCCeeEecc-ccccCCc-cHHHH
Q 005679 229 PLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP--FSKEASYLAYVYPQVYLDF-GLAIPKL-SVQGM 304 (683)
Q Consensus 229 pvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p--~~~e~~~la~~~pnVy~d~-s~~~~~~-~~~g~ 304 (683)
|+.+|++.+..+ ...+.+.++....+.-.++..|+... -..+...++..=..+.++. +...... ....
T Consensus 192 ~i~vH~~~~~~~-------l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~- 263 (388)
T PRK10657 192 IVHVHMGDGKKG-------LQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDPDFLGEGEVAP- 263 (388)
T ss_pred EEEEEeCCchHH-------HHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHHcCCeEEEecCCCcccccCccCH-
Confidence 899998743111 11232233222334446778887542 1123344443322333342 2111000 0011
Q ss_pred HHHHHHHHhhCC-CCcEEEecCCCCC-ccch------hhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHH
Q 005679 305 ISSIKELLELAP-TKKVMFSTDAYAS-PETY------FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (683)
Q Consensus 305 ~~~l~~~le~~~-~~kilfgSD~~~~-Pe~~------~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~r 376 (683)
...+.++++.+. .+|++++||.... |... +.+.-.. ..+...+...+....++..+ +-+++-.|+++
T Consensus 264 ~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~-~~l~~~~~~~~~~~gis~~~----~l~~aT~npA~ 338 (388)
T PRK10657 264 AEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSV-ESLLEEVRELVKDEGLPLED----ALKPLTSNVAR 338 (388)
T ss_pred HHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCch-hhHHHHHHHHHHhcCCCHHH----HHHHHHHHHHH
Confidence 235667777663 7899999995221 2100 0000000 11222233344344577644 78888999999
Q ss_pred HhcCCC
Q 005679 377 FYKINL 382 (683)
Q Consensus 377 ly~l~~ 382 (683)
+|++..
T Consensus 339 ~lg~~~ 344 (388)
T PRK10657 339 FLKLNG 344 (388)
T ss_pred HhCCCC
Confidence 999864
No 77
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=72.96 E-value=15 Score=41.51 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHH
Q 005679 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLA 282 (683)
Q Consensus 211 l~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la 282 (683)
+.+..+..+++.|.++|++|.+|+. |+..++. .-..++.+.....+++.+.++.|+......++..++
T Consensus 292 ~~~e~l~~~~~~a~~~g~~v~~Ha~-gd~~i~~---~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~ 359 (479)
T cd01300 292 ISPEELEELVRAADEAGLQVAIHAI-GDRAVDT---VLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFA 359 (479)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEe-cHHHHHH---HHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHH
Confidence 3455667788999999999999995 3321110 000122233311223678999999765433333333
No 78
>PRK07213 chlorohydrolase; Provisional
Probab=72.28 E-value=1.1e+02 Score=33.51 Aligned_cols=146 Identities=13% Similarity=0.082 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCe
Q 005679 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (683)
Q Consensus 212 ~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pn 287 (683)
.+..+..+.+.|+++|+|+.+|.+-....... .-..| ++.+.+.+-.|+ ++.|+-+--..++..|+..--.
T Consensus 177 s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~--v~~~~~~G~~~~---~i~H~~~~~~~~i~~la~~g~~ 251 (375)
T PRK07213 177 SDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTE--IERLINLGFKPD---FIVHATHPSNDDLELLKENNIP 251 (375)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCCh--HHHHHhcCCCCC---EEEECCCCCHHHHHHHHHcCCc
Confidence 34456678899999999999999754211000 01122 344444322344 3699965545556666654434
Q ss_pred eEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHH
Q 005679 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (683)
Q Consensus 288 Vy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~ 367 (683)
|...+..-.. . ..| ..-++++++.+ =++.+|||+..+. ....+++.- ... ....++.. + +-
T Consensus 252 v~~~P~sn~~-l-~~g-~~~v~~l~~~G--v~v~lGTD~~~~~-----~~~~~~e~~-~~~----~~~~~~~~---~-~l 312 (375)
T PRK07213 252 VVVCPRANAS-F-NVG-LPPLNEMLEKG--ILLGIGTDNFMAN-----SPSIFREME-FIY----KLYHIEPK---E-IL 312 (375)
T ss_pred EEECCcchhh-h-ccC-CccHHHHHHCC--CEEEEeeCCCCCc-----hHhHHHHHH-HHH----HHhCcCHH---H-HH
Confidence 4444332111 0 001 11355555554 3889999974321 112232221 111 11135533 3 44
Q ss_pred HHHHHHHHHHhcCC
Q 005679 368 DIFALNAAQFYKIN 381 (683)
Q Consensus 368 ~I~~~NA~rly~l~ 381 (683)
+..-.|+++.++++
T Consensus 313 ~~aT~~gA~~lg~~ 326 (375)
T PRK07213 313 KMATINGAKILGLI 326 (375)
T ss_pred HHHHHHHHHHhCCC
Confidence 44457888888985
No 79
>PRK08044 allantoinase; Provisional
Probab=72.24 E-value=43 Score=37.70 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=60.0
Q ss_pred CCCCceEEEecCCCCcHHHHHHHHhhC-CeeEeccccccCCccHHHH---------------HHHHHHHHhhCCCCcE-E
Q 005679 259 RFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQGM---------------ISSIKELLELAPTKKV-M 321 (683)
Q Consensus 259 ~~P~l~~vl~H~g~p~~~e~~~la~~~-pnVy~d~s~~~~~~~~~g~---------------~~~l~~~le~~~~~ki-l 321 (683)
+.-++++.+.|.+.+..-+.+.-+... .+++++++...-.++.+.. ..-...+.+..--+.| +
T Consensus 232 ~~~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~ 311 (449)
T PRK08044 232 KVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDC 311 (449)
T ss_pred HHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceE
Confidence 345789999999754333333323222 3677766654322211110 1112223333222334 3
Q ss_pred EecCCCCCccc-----hhh---hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 322 FSTDAYASPET-----YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 322 fgSD~~~~Pe~-----~~~---~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
.+||--++... +|. +.-.....+-.++...|.++.+++.+ +-+.+..|++|+||++
T Consensus 312 i~sDH~P~~~~~K~~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~----~v~~~s~npA~~lgl~ 375 (449)
T PRK08044 312 LVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPM----FGKLMATNAADIFGLQ 375 (449)
T ss_pred EEcCCCCCChHHccCChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHhHHHHhCCC
Confidence 89995443210 000 00001123444556677788898765 5566679999999994
No 80
>PRK09059 dihydroorotase; Validated
Probab=71.92 E-value=37 Score=38.08 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCC---CCC--------CC-CCCCcc-----chHHHHhhcCCCCceEEEecCCCCcHH
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGFGD---KDL--------DL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSK 276 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~Gd---~~~--------~~-~~~~p~-----~L~~l~~~~~~P~l~~vl~H~g~p~~~ 276 (683)
..+..+++.+++.|.++.+|.--.. .+. .+ ..+.|. .+..++.-.+..+.++.+.|.+.+..-
T Consensus 166 ~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~~~~~ 245 (429)
T PRK09059 166 QVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAESA 245 (429)
T ss_pred HHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCHHHH
Confidence 3455677888899999999974321 000 00 112232 222222212466899999999876555
Q ss_pred HHHHHHhhC-CeeEeccccccCCccHH------------------HHHHHHHHHHhhCCCCcEEEecCCCCCccc-----
Q 005679 277 EASYLAYVY-PQVYLDFGLAIPKLSVQ------------------GMISSIKELLELAPTKKVMFSTDAYASPET----- 332 (683)
Q Consensus 277 e~~~la~~~-pnVy~d~s~~~~~~~~~------------------g~~~~l~~~le~~~~~kilfgSD~~~~Pe~----- 332 (683)
++...++.- -+|+.+++..+-.+..+ .-+..|-+.+.-+..+ +++||--++...
T Consensus 246 ~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id--~i~sDh~p~~~~~K~~~ 323 (429)
T PRK09059 246 EALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTID--IIVSSHDPQDVDTKRLP 323 (429)
T ss_pred HHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCc--EEEeCCCCCCHHHCcCC
Confidence 555555443 26888877543211100 0112333333322222 356885433210
Q ss_pred hh---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 333 YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 333 ~~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+| .+.-.+...+.-++ ..+.++.+++.+ +-+++..|++|+|||.
T Consensus 324 ~~~~~~G~~gle~~l~~~~-~~v~~~~l~l~~----~~~~~s~nPA~~~gl~ 370 (429)
T PRK09059 324 FSEAAAGAIGLETLLAAAL-RLYHNGEVPLLR----LIEALSTRPAEIFGLP 370 (429)
T ss_pred hhhCCCCcccHHHHHHHHH-HHHHcCCCCHHH----HHHHHhHHHHHHhCCC
Confidence 01 00001111222222 457778888754 6666777999999994
No 81
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=71.79 E-value=67 Score=35.95 Aligned_cols=35 Identities=6% Similarity=0.190 Sum_probs=25.4
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005679 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (683)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~~ 382 (683)
+..++.+.+.++.+++.+ +-+++..|.+++||+..
T Consensus 345 l~~l~~~~v~~~~~~~~~----~~~~~t~~pa~~~gl~~ 379 (454)
T TIGR02033 345 MTLLFDEGVATGRITLEK----FVELTSTNPAKIFNMYP 379 (454)
T ss_pred HHHHHHHHHHcCCCCHHH----HHHHHhhHHHHHcCCCC
Confidence 444555667677788755 66778899999999853
No 82
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.63 E-value=10 Score=34.42 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=36.2
Q ss_pred eeeeeeeccccCCCCCCCCCHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCCC
Q 005679 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (683)
Q Consensus 167 vgfksi~~y~~gl~~~~~~~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~l~e~a~e~glpvq~H~G~G 237 (683)
.|||||+|-|..-+-+..|+-++.+++.+++--.-....+....+...-+..+-+...|.+-||.-|+-.|
T Consensus 27 ~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCrsG 97 (130)
T COG3453 27 LGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAYCRSG 97 (130)
T ss_pred hccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeecCC
Confidence 49999999996554433365444444433321000011111122222222223455678888888888655
No 83
>PRK09061 D-glutamate deacylase; Validated
Probab=69.53 E-value=93 Score=35.72 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHHHHhc
Q 005679 343 VVFSVLRDTCIDE-DLSVGEAIEVAKDIFALNAAQFYK 379 (683)
Q Consensus 343 ~l~~~l~~~v~~g-~l~~~ea~~~~~~I~~~NA~rly~ 379 (683)
.+.+++..+|.++ .+++.+ +=+.+-.|.++++|
T Consensus 401 ~~~~~l~~~v~~~~~isl~~----ai~~~T~~pA~~lg 434 (509)
T PRK09061 401 TFARFLREYVRERKALSLLE----AIRKCTLMPAQILE 434 (509)
T ss_pred chHHHHHHHHhhcccCCHHH----HHHHHHHHHHHHhc
Confidence 4556677777764 588754 45556677788888
No 84
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=69.40 E-value=14 Score=30.46 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEe
Q 005679 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATF 630 (683)
-++.++...|.+.|++|+.++.-.-.|+|-..+.-.-+ .|+.-.++..+++++++.|+.+.|
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~~l~v~v 75 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEELGLDVSV 75 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHCCcEEEE
Confidence 47889999999999999999999999999887766544 567788999999999999999876
No 85
>PRK08204 hypothetical protein; Provisional
Probab=69.34 E-value=66 Score=35.99 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=53.3
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEeccccc
Q 005679 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (683)
Q Consensus 216 ~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~s~~ 295 (683)
+..+.+.+.++|+++++|..-+..+ .....++.+.+. .+.+.++++.|+.+-...++..|+.. ++++-.+..
T Consensus 203 l~~~~~~A~~~g~~v~~H~~e~~~~-----~~~~~~~~l~~~-g~~~~~~~i~H~~~~~~~~~~~la~~--g~~v~~~P~ 274 (449)
T PRK08204 203 ARADFRLARELGLPISMHQGFGPWG-----ATPRGVEQLHDA-GLLGPDLNLVHGNDLSDDELKLLADS--GGSFSVTPE 274 (449)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCcc-----cCCCHHHHHHHC-CCCCCCeEEEecCCCCHHHHHHHHHc--CCCEEEChH
Confidence 3345678899999999999754321 111224444442 35567889999976554455555543 222221111
Q ss_pred cCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 296 IPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
.+.....+ ..-++++++.+ =++.+|||+.
T Consensus 275 ~~~~~g~~-~~~~~~~~~~G--v~v~lGtD~~ 303 (449)
T PRK08204 275 IEMMMGHG-YPVTGRLLAHG--VRPSLGVDVV 303 (449)
T ss_pred HHhhhcCC-CCcHHHHHhcC--CceeeccccC
Confidence 10000000 01245555543 4788999964
No 86
>PRK06189 allantoinase; Provisional
Probab=68.23 E-value=43 Score=37.67 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=60.1
Q ss_pred CCCCceEEEecCCCCcHHHHHHHHhhC-CeeEeccccccCCccHH------------------HHHHHHHHHHhhCCCCc
Q 005679 259 RFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQ------------------GMISSIKELLELAPTKK 319 (683)
Q Consensus 259 ~~P~l~~vl~H~g~p~~~e~~~la~~~-pnVy~d~s~~~~~~~~~------------------g~~~~l~~~le~~~~~k 319 (683)
+..++++.+.|.+.+..-++..-++.. .+|+++++........+ .-+..|.+.+..+- -
T Consensus 229 ~~~g~~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~--i 306 (451)
T PRK06189 229 QETGCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGE--I 306 (451)
T ss_pred HHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCC--c
Confidence 456788999998765443333333322 36777666533111110 11224444444322 2
Q ss_pred EEEecCCCCCccc------hhh---hHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 320 VMFSTDAYASPET------YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 320 ilfgSD~~~~Pe~------~~~---~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
...|||..++... ++. +.-.+...+--++...+.++.+++.+ +-+.+-.|.+++||++
T Consensus 307 ~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~----~~~~~t~npA~~lgl~ 373 (451)
T PRK06189 307 DMISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLET----IARLLATNPAKRFGLP 373 (451)
T ss_pred eEEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHH----HHHHHhhhHHHHhCCC
Confidence 3589996443210 000 00001122333445555677788754 6667779999999994
No 87
>PRK07583 cytosine deaminase-like protein; Validated
Probab=67.16 E-value=69 Score=35.91 Aligned_cols=56 Identities=11% Similarity=-0.048 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCC
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY 272 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~ 272 (683)
+..+..+++.|.++|+|+.+|++..+... .. .+..+...+.. ..++-++++.|+..
T Consensus 211 d~~l~~i~~lA~~~G~~v~vH~~E~~~~~--~~-~l~~~~~~~~~-~G~~~~v~i~H~~~ 266 (438)
T PRK07583 211 DAQLDRLFRLARERGLDLDLHVDETGDPA--SR-TLKAVAEAALR-NGFEGKVTCGHCCS 266 (438)
T ss_pred HHHHHHHHHHHHHhCCCcEEeECCCCCch--HH-HHHHHHHHHHH-hCCCCCEEEEeccc
Confidence 34677789999999999999997532100 00 12223333322 34556799999853
No 88
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=66.73 E-value=51 Score=36.99 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=23.4
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcC
Q 005679 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (683)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l 380 (683)
+-.++...+.++.+++.+ +-+.+-.|+++++++
T Consensus 337 l~~~~~~~~~~~~l~~~~----~~~~~t~~pA~~~g~ 369 (443)
T TIGR03178 337 LDVMFDEAVQKRGLPLED----IARLMATNPAKRFGL 369 (443)
T ss_pred HHHHHHHHHHhcCCCHHH----HHHHHhHHHHHHcCC
Confidence 334455566677888754 666777899999998
No 89
>PRK08417 dihydroorotase; Provisional
Probab=66.26 E-value=94 Score=34.19 Aligned_cols=163 Identities=16% Similarity=0.131 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhCCCcEEEecCCC-----------CCCCCC-CCCCcc-----chHHHHhhcCCCCceEEEecCCCCcHHH
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFG-----------DKDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~G-----------d~~~~~-~~~~p~-----~L~~l~~~~~~P~l~~vl~H~g~p~~~e 277 (683)
.+..+++.++++|.||.+|.--. ..+... ..+.|. .+..++.--+.-+.++.+.|.+.+..-+
T Consensus 131 ~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~ 210 (386)
T PRK08417 131 LLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLE 210 (386)
T ss_pred HHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHH
Confidence 34445666778888888887331 000100 112232 2222222113457899999998655444
Q ss_pred HHHHHhhCC-eeEeccccccCCccHHHH---------------HHHHHHHHhhCCCCcE-EEecCCCCCccc-----hh-
Q 005679 278 ASYLAYVYP-QVYLDFGLAIPKLSVQGM---------------ISSIKELLELAPTKKV-MFSTDAYASPET-----YF- 334 (683)
Q Consensus 278 ~~~la~~~p-nVy~d~s~~~~~~~~~g~---------------~~~l~~~le~~~~~ki-lfgSD~~~~Pe~-----~~- 334 (683)
+..-++... +|..++++.+-.++.+.. ++-...+.+..--+.| +.+||--+++.- +|
T Consensus 211 ~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~~~~~ 290 (386)
T PRK08417 211 LLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDLAFDE 290 (386)
T ss_pred HHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhH
Confidence 443333332 577777664322211100 0111222332222345 589995444210 11
Q ss_pred --hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 335 --LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 335 --~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
.+.-.+...+.-++...+.++.+++.+ +-..+..|.+++||++
T Consensus 291 a~~G~~g~e~~~~~~~~~~v~~~~~~~~~----~~~~~t~~pA~~lgl~ 335 (386)
T PRK08417 291 AAFGIDSICEYFSLCYTYLVKEGIITWSE----LSRFTSYNPAQFLGLN 335 (386)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHhCCC
Confidence 111122333444455667778888755 6677889999999985
No 90
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=65.43 E-value=83 Score=35.09 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=64.5
Q ss_pred HHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEeccccccCC
Q 005679 219 SLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPK 298 (683)
Q Consensus 219 l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~s~~~~~ 298 (683)
.++.+.++|+|+..|+- |+. ...|...++. -+.. .|.+.. .+++..... ..+|+.+...+.
T Consensus 126 ~i~~A~~~g~~v~~Ha~-g~~--------~~~L~a~l~a--Gi~~----dH~~~~-~eea~e~l~--~G~~i~i~~g~~- 186 (422)
T cd01295 126 KIQAAKKAGKPVDGHAP-GLS--------GEELNAYMAA--GIST----DHEAMT-GEEALEKLR--LGMYVMLREGSI- 186 (422)
T ss_pred HHHHHHhCCCEEEEeCC-CCC--------HHHHHHHHHc--CCCC----CcCCCc-HHHHHHHHH--CCCEEEEECccc-
Confidence 45778899999999982 211 1234444442 2211 376432 233444432 477777653221
Q ss_pred ccHHHHHHHHHHHHhhCC---CCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHH
Q 005679 299 LSVQGMISSIKELLELAP---TKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAA 375 (683)
Q Consensus 299 ~~~~g~~~~l~~~le~~~---~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~ 375 (683)
...++.+++..+ ..+++++||.+ .|... . .+ -.+..++...++. .++..+ +-+....|++
T Consensus 187 ------~~~~~~~~~~l~~~~~~~i~l~TD~~-~~~~~-~-~~---g~~~~v~r~a~~~-g~s~~e----al~~aT~n~A 249 (422)
T cd01295 187 ------AKNLEALLPAITEKNFRRFMFCTDDV-HPDDL-L-SE---GHLDYIVRRAIEA-GIPPED----AIQMATINPA 249 (422)
T ss_pred ------HhhHHHHHHhhhhccCCeEEEEcCCC-Cchhh-h-hc---chHHHHHHHHHHc-CCCHHH----HHHHHhHHHH
Confidence 111222222222 48999999974 33211 1 00 0111222222222 356543 6777888999
Q ss_pred HHhcC
Q 005679 376 QFYKI 380 (683)
Q Consensus 376 rly~l 380 (683)
++|++
T Consensus 250 ~~~gl 254 (422)
T cd01295 250 ECYGL 254 (422)
T ss_pred HHcCC
Confidence 99998
No 91
>PRK02382 dihydroorotase; Provisional
Probab=64.97 E-value=62 Score=36.31 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=21.9
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 350 DTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 350 ~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
..|.++.+++++ +-+.+..|.+++|+++
T Consensus 334 ~~~~~~~~~l~~----~~~~~t~~pA~~~g~~ 361 (443)
T PRK02382 334 AAVRKNRLPLER----VRDVTAANPARIFGLD 361 (443)
T ss_pred HHHHcCCCCHHH----HHHHHhHHHHHHcCCC
Confidence 567778888754 6666779999999995
No 92
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=64.64 E-value=1.9e+02 Score=31.17 Aligned_cols=151 Identities=19% Similarity=0.154 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCccCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCce
Q 005679 185 VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCR 264 (683)
Q Consensus 185 ~~~~ea~~~~~~~l~~~~~~~~~~~~l~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~ 264 (683)
.|+++..+.+.+..... ....+..+..+++.|.++|+|+..|.... +..+....+ . ++.
T Consensus 141 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~iv~~A~~~gl~vasH~d~~----------~~~v~~a~~---~-Gv~ 199 (325)
T cd01306 141 LSDEEVEEAILERKARA-------AAYAPANRSELAALARARGIPLASHDDDT----------PEHVAEAHE---L-GVV 199 (325)
T ss_pred CCHHHHHHHHHHHHHHh-------hhcCHHHHHHHHHHHHHCCCcEEEecCCC----------hHHHHHHHH---C-CCe
Confidence 36788888777766532 12212345667899999999999998642 123444443 1 333
Q ss_pred EEEecCCCCcHHHHHHHHhhCCeeEecccc--ccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHH
Q 005679 265 FVLLHASYPFSKEASYLAYVYPQVYLDFGL--AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRARE 342 (683)
Q Consensus 265 ~vl~H~g~p~~~e~~~la~~~pnVy~d~s~--~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~ 342 (683)
++ - +|...+.+..+... ++++..+. ....-+..|.. .++++++.+. .+.++||.. |.. .+..
T Consensus 200 ~~-E---~p~t~e~a~~a~~~-G~~vv~gapn~lrg~s~~g~~-~~~~ll~~Gv--~~al~SD~~--p~s------ll~~ 263 (325)
T cd01306 200 IS-E---FPTTLEAAKAAREL-GLQTLMGAPNVVRGGSHSGNV-SARELAAHGL--LDILSSDYV--PAS------LLHA 263 (325)
T ss_pred ec-c---CCCCHHHHHHHHHC-CCEEEecCcccccCccccccH-hHHHHHHCCC--eEEEEcCCC--cHh------HHHH
Confidence 33 1 23444444444322 33333221 00000001211 2445555432 467999952 211 1111
Q ss_pred HHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 343 VVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 343 ~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
.+ .++....+++.+ +=+..-.|+++++|++
T Consensus 264 ~~-----~la~~~gl~l~e----Al~~aT~nPA~~lGl~ 293 (325)
T cd01306 264 AF-----RLADLGGWSLPE----AVALVSANPARAVGLT 293 (325)
T ss_pred HH-----HHHHHcCCCHHH----HHHHHhHHHHHHcCCC
Confidence 11 122234577654 4455567889999986
No 93
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=60.68 E-value=2.2e+02 Score=31.10 Aligned_cols=138 Identities=12% Similarity=0.037 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCc-----H-----HHHHHHHhh
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF-----S-----KEASYLAYV 284 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~-----~-----~e~~~la~~ 284 (683)
.+....+.++++|+|+.+|++-... ....+++. .-++ .++.|+.+.. . .+....+ .
T Consensus 174 ~l~~~~~~A~~~g~~v~iH~~e~~~----------~~~~~~~~-l~~g--~~~~H~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (379)
T PRK12394 174 PLTETLRIANDLRCPVAVHSTHPVL----------PMKELVSL-LRRG--DIIAHAFHGKGSTILTEEGAVLAEVRQA-R 239 (379)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCc----------cHHHHHHh-cCCC--CEEEecCCCCCCCcCCCCCCChHHHHHH-H
Confidence 3444677888999999999974321 12222221 1122 3578874311 1 1222222 3
Q ss_pred CCeeEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHH
Q 005679 285 YPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIE 364 (683)
Q Consensus 285 ~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~ 364 (683)
-.++++|...-- +...+ ..+.++++.+ .-..++|||.......... .. .+..++.+.+.. .++..+
T Consensus 240 ~~G~~~~~~~g~---s~~~~-~~~~~~l~~G-~~~~~lgTD~~~~~~~~~~-~~----~l~~~~~~~~~~-~~~~~~--- 305 (379)
T PRK12394 240 ERGVIFDAANGR---SHFDM-NVARRAIANG-FLPDIISSDLSTITKLAWP-VY----SLPWVLSKYLAL-GMALED--- 305 (379)
T ss_pred hCCeEEEecCCc---cccch-HHHHHHHHCC-CCceEEECCCCCCCcccCc-cc----hHHHHHHHHHHc-CCCHHH---
Confidence 346777654411 11111 2334555443 2234789997653321111 11 122233444433 366644
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005679 365 VAKDIFALNAAQFYKIN 381 (683)
Q Consensus 365 ~~~~I~~~NA~rly~l~ 381 (683)
+=+..-.|+++++|++
T Consensus 306 -~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 306 -VINACTHTPAVLMGMA 321 (379)
T ss_pred -HHHHHHHHHHHHhCCC
Confidence 4556678889999985
No 94
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=60.50 E-value=65 Score=36.07 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC--CCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEecc
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD--LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDF 292 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~--~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~ 292 (683)
.+..+++.|.++|+++++|.+.+..... +....+..++.+.+. .+-+-++++.|+.+--..++..++.. ++.+-.
T Consensus 203 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~-g~l~~r~~~~H~~~l~~~~~~~la~~--g~~i~~ 279 (443)
T PRK09045 203 NLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARL-GLLGPRLIAVHMTQLTDAEIALLAET--GCSVVH 279 (443)
T ss_pred HHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHc-CCCCCCeEEEEecCCCHHHHHHHHHc--CCeEEE
Confidence 4445678889999999999975321110 000001112223222 34456788899965444445555543 333321
Q ss_pred ccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 293 GLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 293 s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
+...+.. ...-..-++++++.+ -++.+|||+..
T Consensus 280 ~P~~~~~-~~~~~~~~~~l~~~G--v~v~lGtD~~~ 312 (443)
T PRK09045 280 CPESNLK-LASGFCPVAKLLQAG--VNVALGTDGAA 312 (443)
T ss_pred CHHHHhh-hccCCCcHHHHHHCC--CeEEEecCCCC
Confidence 1110000 000011355555533 36789999653
No 95
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=60.18 E-value=70 Score=34.74 Aligned_cols=113 Identities=15% Similarity=0.082 Sum_probs=62.1
Q ss_pred CCCceEEEecCCCCcHHHHHHHHhhC-CeeEeccccccCCccHH----------------HHHHHHHHHHhhCCCCcEEE
Q 005679 260 FSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKLSVQ----------------GMISSIKELLELAPTKKVMF 322 (683)
Q Consensus 260 ~P~l~~vl~H~g~p~~~e~~~la~~~-pnVy~d~s~~~~~~~~~----------------g~~~~l~~~le~~~~~kilf 322 (683)
.-+.++++.|.+.+..-++..-++.. .+|+.+++...-.++.+ .-+..|-+.+.. .+ +.
T Consensus 146 ~~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~k~~PPLR~~~dr~aL~~~l~~--id--~i 221 (344)
T cd01316 146 LHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPRGQYEVRPFLPTREDQEALWENLDY--ID--CF 221 (344)
T ss_pred HHCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHhhcCCceeCCCCcCHHHHHHHHHHHhc--CC--EE
Confidence 44788888888765544444444433 36777776543222111 112233333321 22 58
Q ss_pred ecCCCCCccch------hhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 323 STDAYASPETY------FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 323 gSD~~~~Pe~~------~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+||--++.... +.+.-.+...+.-++ ..|.+|.+++++ .-+++..|.+++|||.
T Consensus 222 ~SDHaP~~~~~K~~~~a~~G~~g~e~~lpl~~-~~v~~~~i~l~~----l~~~~s~nPAk~~gl~ 281 (344)
T cd01316 222 ATDHAPHTLAEKTGNKPPPGFPGVETSLPLLL-TAVHEGRLTIED----IVDRLHTNPKRIFNLP 281 (344)
T ss_pred EcCCCCCCHHHhcCCCCCCCcccHHHHHHHHH-HHHHcCCCCHHH----HHHHHHHhHHHHhCCC
Confidence 99964443210 111112222233333 468888999865 7788899999999985
No 96
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=59.56 E-value=1.3e+02 Score=32.96 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=41.9
Q ss_pred HHHHHHHHhhC-CCCcEEEecCCCC-CccchhhhH------HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHH
Q 005679 305 ISSIKELLELA-PTKKVMFSTDAYA-SPETYFLGA------KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (683)
Q Consensus 305 ~~~l~~~le~~-~~~kilfgSD~~~-~Pe~~~~~~------~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~r 376 (683)
...++.+++.. +.+|++++||... .|.....+. --... +-..+...++.+.++..+ +-+++-.|+++
T Consensus 263 ~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~-~~~~~~~~v~~~~i~~~~----al~~~T~npA~ 337 (387)
T cd01308 263 SEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDT-LLREVREAVKCGDIPLEV----ALRVITSNVAR 337 (387)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHHH-HHHHHHHHHHhCCCCHHH----HHHHHHHHHHH
Confidence 35677777775 5689999999521 121100000 00111 113333455666788754 77788899999
Q ss_pred HhcCC
Q 005679 377 FYKIN 381 (683)
Q Consensus 377 ly~l~ 381 (683)
+++++
T Consensus 338 ~lg~~ 342 (387)
T cd01308 338 ILKLR 342 (387)
T ss_pred HhCCC
Confidence 99986
No 97
>PRK09237 dihydroorotase; Provisional
Probab=58.76 E-value=2e+02 Score=31.42 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 005679 364 EVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 364 ~~~~~I~~~NA~rly~l~ 381 (683)
+.+-++...|++++|+++
T Consensus 299 ~~al~~aT~n~A~~lgl~ 316 (380)
T PRK09237 299 EEVIAAVTKNAADALRLP 316 (380)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 447778889999999984
No 98
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=58.66 E-value=51 Score=37.04 Aligned_cols=106 Identities=18% Similarity=0.052 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEe
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~ 290 (683)
.+..+.+.|.++|+++++|..-+...... .-..| ++.+.+. .+.+-++++.|+.+--..++..++..--.|..
T Consensus 215 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~ 291 (451)
T PRK08203 215 LMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRP--VDYLEDL-GWLGPDVWLAHCVHLDDAEIARLARTGTGVAH 291 (451)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEEeCCCHHHHHHHHhcCCeEEE
Confidence 34446788899999999999654211100 00112 2222222 34567889999976554555555543212221
Q ss_pred ccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
-.. .+.....+ ..-++++++.+ -++.+|||+..
T Consensus 292 ~P~--~~~~l~~~-~~~~~~~~~~G--v~v~lGtD~~~ 324 (451)
T PRK08203 292 CPC--SNMRLASG-IAPVRELRAAG--VPVGLGVDGSA 324 (451)
T ss_pred CcH--HhhhhccC-CCCHHHHHHCC--CeEEEecCCCc
Confidence 111 00000000 11345566644 37889999743
No 99
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=58.33 E-value=52 Score=35.99 Aligned_cols=106 Identities=24% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC--C--CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEe
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD--L--RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~--~--~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~ 290 (683)
.+..+++.|.++|+++.+|.+-...... . ....+ ++.+.+. ...+.++.+.|+.+--..++..++. . ++.+
T Consensus 195 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~i~H~~~l~~~~~~~l~~-~-gi~~ 269 (411)
T cd01298 195 LLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRP--VEYLEEL-GLLGPDVVLAHCVWLTDEEIELLAE-T-GTGV 269 (411)
T ss_pred HHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEecCCCHHHHHHHHH-c-CCeE
Confidence 4455678889999999999853211000 0 00111 2222221 3446788999986543333333433 2 3444
Q ss_pred ccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
-++...+.....+ ..-++++++.+ -++.+|||+..
T Consensus 270 ~~~p~~~~~~~~~-~~~~~~~~~~G--v~~~~GsD~~~ 304 (411)
T cd01298 270 AHNPASNMKLASG-IAPVPEMLEAG--VNVGLGTDGAA 304 (411)
T ss_pred EEChHHhhhhhhC-CCCHHHHHHCC--CcEEEeCCCCc
Confidence 3322111100001 11355666643 25779999753
No 100
>PRK08418 chlorohydrolase; Provisional
Probab=57.41 E-value=1.1e+02 Score=33.81 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC---C-----------------CCCCcc-chHHHHhhcCCCCceEEEecCCCC
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD---L-----------------RLSNPL-HLRAILEDKRFSKCRFVLLHASYP 273 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~---~-----------------~~~~p~-~L~~l~~~~~~P~l~~vl~H~g~p 273 (683)
++..+.+.|+++|+|+++|..-+..... . +...|. +|+. +-..+.++.|+.+-
T Consensus 191 ~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~------~g~~~~~~~H~~~~ 264 (408)
T PRK08418 191 LAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLEL------FKGLRTLFTHCVYA 264 (408)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHH------hCCCCeEEEecccC
Confidence 3444678889999999999986321100 0 011332 2221 21346799999876
Q ss_pred cHHHHHHHHhhCCeeEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 274 FSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 274 ~~~e~~~la~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
-..+...|+..--+|-..... +..-..| ..-++++++.+ =++-+|||+.
T Consensus 265 ~~~di~~la~~g~~v~~cP~s--n~~lg~g-~~p~~~~~~~G--i~v~lGtD~~ 313 (408)
T PRK08418 265 SEEELEKIKSKNASITHCPFS--NRLLSNK-ALDLEKAKKAG--INYSIATDGL 313 (408)
T ss_pred CHHHHHHHHHcCCcEEECHhH--HHHhcCC-CccHHHHHhCC--CeEEEeCCCC
Confidence 667777777643333221111 0000001 11344555543 4788999964
No 101
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.82 E-value=17 Score=30.75 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeec
Q 005679 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpK 633 (683)
-++.++...|.+.|+.|..++.-.-.|+|-+.+.-.-+ ...+++-.++..++.++.+.|+..++-+.
T Consensus 13 Giva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~~l~~~i~~~ 79 (88)
T cd04872 13 GIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKELGVKIRIQHE 79 (88)
T ss_pred CHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 57889999999999999999999888888766554422 11345678899999999999999998765
No 102
>PRK13404 dihydropyrimidinase; Provisional
Probab=56.82 E-value=1.2e+02 Score=34.45 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=24.4
Q ss_pred HHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 344 l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+.-++...+..+.+++.+ +-+++..|++|++|+.
T Consensus 352 l~~ll~~~v~~~~ls~~~----~~~~~t~~pA~~lgl~ 385 (477)
T PRK13404 352 LPLLFSEGVVKGRISLNR----FVALTSTNPAKLYGLY 385 (477)
T ss_pred HHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHhCCC
Confidence 444555556667788755 6677889999999984
No 103
>PRK00194 hypothetical protein; Validated
Probab=56.68 E-value=15 Score=31.14 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeec
Q 005679 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpK 633 (683)
.++.++...|.+.|++|..++.....|.|.+.+.-.-+ ...++.-.+++-+++++.+.|+..+|-+-
T Consensus 15 Giva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 81 (90)
T PRK00194 15 GIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELGVKIRIQHE 81 (90)
T ss_pred CHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 58899999999999999999999888888773332211 11223456788899999999999998653
No 104
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=56.28 E-value=55 Score=36.66 Aligned_cols=105 Identities=19% Similarity=0.127 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEe
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~ 290 (683)
.+..+.+.+.++|+++++|..-+....+. ....| ++.+.+. .+-+-++++.|+.+--..+...|+..--+|-.
T Consensus 198 ~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~--~~~l~~~-Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~ 274 (435)
T PRK15493 198 LLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRP--VEYAASC-GLFKRPTVIAHGVVLNDNERAFLAEHDVRVAH 274 (435)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCcEEEEeecCCHHHHHHHHHcCCeEEE
Confidence 45556788999999999999764321110 01122 2223322 34466789999976555566666644333322
Q ss_pred ccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
.... +.....| ..-++++++.+ -++.+|||+.
T Consensus 275 ~P~s--n~~l~~g-~~p~~~~~~~G--v~v~lGtD~~ 306 (435)
T PRK15493 275 NPNS--NLKLGSG-IANVKAMLEAG--IKVGIATDSV 306 (435)
T ss_pred ChHH--HHHHhcC-cccHHHHHHCC--CeEEEccCcc
Confidence 2111 0000001 11345555543 4788999963
No 105
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=55.04 E-value=11 Score=40.20 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHh-CCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeec
Q 005679 564 VSPVFQEVLADLHS-LNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (683)
Q Consensus 564 ~~~~~~ei~~~l~~-~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpK 633 (683)
..-|-+.++..|.+ ..||--.+..| + -+|.++.+|+-+|.+|...|..-||||-
T Consensus 248 lrGf~rAMvKtMt~alkiPHF~y~dE---------------I-n~~sLvklr~elk~~a~e~~IKltfmPf 302 (474)
T KOG0558|consen 248 LRGFSRAMVKTMTEALKIPHFGYVDE---------------I-NCDSLVKLRQELKENAKERGIKLTFMPF 302 (474)
T ss_pred chhHHHHHHHHHHHHhcCCccccccc---------------c-ChHHHHHHHHHHhhhhhhcCceeeehHH
Confidence 45577788888866 45554443333 2 5899999999999999999999999998
No 106
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=54.92 E-value=1.6e+02 Score=32.11 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=60.6
Q ss_pred CCCCceEEEecCCCCcHHHHHHHHhhCCeeEeccccccCCccH------------------HHHHHHHHHHHhhCCCCcE
Q 005679 259 RFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSV------------------QGMISSIKELLELAPTKKV 320 (683)
Q Consensus 259 ~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~s~~~~~~~~------------------~g~~~~l~~~le~~~~~ki 320 (683)
+..+.++.+.|.+.+..-+...-++ .+|+.+++..+-.... ..-+..|.+.++.+- -.
T Consensus 168 ~~~~~~~hi~Hvs~~~~~~~i~~~k--~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~--id 243 (361)
T cd01318 168 RRHGARLHICHVSTPEELKLIKKAK--PGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSREDRKALLQALADGR--ID 243 (361)
T ss_pred HHHCCCEEEEeCCCHHHHHHHHHhC--CCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhCCC--CC
Confidence 4678999999998655433333332 5788877764321111 111224444444322 23
Q ss_pred EEecCCCCCccc-----hh---hhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005679 321 MFSTDAYASPET-----YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (683)
Q Consensus 321 lfgSD~~~~Pe~-----~~---~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~~ 382 (683)
+++||..++... +| .+.. ..+.+..++-.++.++.+++.+ +-+.+..|.+++|+++.
T Consensus 244 ~i~SDh~P~~~~~k~~~~~~a~~G~~-g~e~~l~~~~~~v~~~~l~l~~----a~~~~t~nPA~~lgl~~ 308 (361)
T cd01318 244 VIASDHAPHTLEEKRKGYPAAPSGIP-GVETALPLMLTLVNKGILSLSR----VVRLTSHNPARIFGIKN 308 (361)
T ss_pred EEeeCCCCCCHHHccCChhhCCCCCc-cHHHHHHHHHHHHHcCCCCHHH----HHHHHhHHHHHHhCCCC
Confidence 599994322110 00 0000 0111122333566777888755 56677788889999853
No 107
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=54.72 E-value=1.3e+02 Score=34.74 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005679 365 VAKDIFALNAAQFYKIN 381 (683)
Q Consensus 365 ~~~~I~~~NA~rly~l~ 381 (683)
.+-.++..|.++++|++
T Consensus 431 ei~~mtT~nPAKiLGL~ 447 (541)
T cd01304 431 EIAIMTRAGPAKLLGLS 447 (541)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 37778889999999995
No 108
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=54.42 E-value=16 Score=37.59 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=42.5
Q ss_pred CccCchhhhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHH---HHhhcCCCCceEEEecC--CCCcH---
Q 005679 204 VRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRA---ILEDKRFSKCRFVLLHA--SYPFS--- 275 (683)
Q Consensus 204 ~~~~~~~l~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~---l~~~~~~P~l~~vl~H~--g~p~~--- 275 (683)
..+....+.. .|+++.+++.|+||.+=||... ...++. +++ +-.+-+++++|| +||--
T Consensus 93 ~KIaS~dl~n---~~lL~~~A~tgkPvIlSTG~st---------l~EI~~Av~~~~--~~~~~~l~llHC~s~YP~~~e~ 158 (241)
T PF03102_consen 93 YKIASGDLTN---LPLLEYIAKTGKPVILSTGMST---------LEEIERAVEVLR--EAGNEDLVLLHCVSSYPTPPED 158 (241)
T ss_dssp EEE-GGGTT----HHHHHHHHTT-S-EEEE-TT-----------HHHHHHHHHHHH--HHCT--EEEEEE-SSSS--GGG
T ss_pred EEeccccccC---HHHHHHHHHhCCcEEEECCCCC---------HHHHHHHHHHHH--hcCCCCEEEEecCCCCCCChHH
Confidence 3444445554 4678889999999999999752 112222 232 235789999999 67743
Q ss_pred ---HHHHHHHhhCCeeEeccccc
Q 005679 276 ---KEASYLAYVYPQVYLDFGLA 295 (683)
Q Consensus 276 ---~e~~~la~~~pnVy~d~s~~ 295 (683)
+.+..|...|+ +-++.|--
T Consensus 159 ~NL~~i~~L~~~f~-~~vG~SDH 180 (241)
T PF03102_consen 159 VNLRVIPTLKERFG-VPVGYSDH 180 (241)
T ss_dssp --TTHHHHHHHHST-SEEEEEE-
T ss_pred cChHHHHHHHHhcC-CCEEeCCC
Confidence 23567778898 66666653
No 109
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.48 E-value=30 Score=28.27 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeee
Q 005679 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmp 632 (683)
-++.++...|.+.|+.|+.++.-.-.|+|-+.+.-.-| ...++-.++..+..++++.|+.++.-|
T Consensus 11 Giv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l~l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHELGLQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHcCceEEEeC
Confidence 47889999999999999999776666777665433311 111356788999999999999988644
No 110
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=51.23 E-value=32 Score=31.90 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=13.7
Q ss_pred eeeeeeccccCCCCCCCCC
Q 005679 168 GLKSIAAYRSGLEINPHVT 186 (683)
Q Consensus 168 gfksi~~y~~gl~~~~~~~ 186 (683)
|||+|++.|..-+....++
T Consensus 27 GiktVIdlR~~~E~~~~p~ 45 (135)
T TIGR01244 27 GFKTVINNRPDREEESQPD 45 (135)
T ss_pred CCcEEEECCCCCCCCCCCC
Confidence 8999999997655443344
No 111
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=51.09 E-value=91 Score=35.48 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCCCCCCCCC--CCCCccchHHHHhhcCCCCceEEEecCCCCcH---------HHHH
Q 005679 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL--RLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEAS 279 (683)
Q Consensus 211 l~d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~--~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~---------~e~~ 279 (683)
..+..+..+.+.|.++|+|+++|+.-|+...+. .......++.+.+ ..+.+-++++.|+.+--. .++.
T Consensus 218 ~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~-~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~ 296 (488)
T PRK06151 218 CTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLAD-VGLLGPRLLIPHATYISGSPRLNYSGGDDLA 296 (488)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHH-cCCCCCCcEEEEEEEcCCccccccCCHHHHH
Confidence 334456667889999999999999655321110 0001111222332 234567899999964333 4455
Q ss_pred HHHhhCCeeEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCC
Q 005679 280 YLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (683)
Q Consensus 280 ~la~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (683)
.++.. ++++..+...+.....+ ..-++++++.+ -++.+|||+
T Consensus 297 ~la~~--g~~v~~~P~~~~~~g~~-~~p~~~l~~~G--v~v~lGtD~ 338 (488)
T PRK06151 297 LLAEH--GVSIVHCPLVSARHGSA-LNSFDRYREAG--INLALGTDT 338 (488)
T ss_pred HHHhc--CCEEEECchhhhhhccc-cccHHHHHHCC--CcEEEECCC
Confidence 55543 34333221111000001 12345555544 368899997
No 112
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=50.28 E-value=92 Score=33.83 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 356 DLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 356 ~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
.++..+ +-+....|++++|+++
T Consensus 292 g~~~~e----a~~~~t~npa~~~gl~ 313 (365)
T TIGR03583 292 GYSLEE----VIEKVTKNAAEILKLT 313 (365)
T ss_pred CCCHHH----HHHHHHHHHHHHhCCC
Confidence 466644 6778889999999995
No 113
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=47.00 E-value=1.5e+02 Score=32.87 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeE
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy 289 (683)
-.+..+++.++++|+|+++|.+-+...... .-..| .. .+.+-.+-+-++++.|+.+--..++..++.. +++
T Consensus 189 ~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~-~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~--g~~ 263 (424)
T PRK08393 189 ALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSP--VV-LLDEIGFLNEDVIAAHGVWLSSRDIRILASA--GVT 263 (424)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCH--HH-HHHHcCCCCCCcEEEEeecCCHHHHHHHHhc--CCE
Confidence 355557788899999999999754211100 00122 11 2221123356788999865433444444432 344
Q ss_pred eccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
+..+...+.....|. .-++++++.+ -++.+|||+.
T Consensus 264 v~~~P~sn~~lg~g~-~~~~~~~~~G--v~v~lGtD~~ 298 (424)
T PRK08393 264 VAHNPASNMKLGSGV-MPLRKLLNAG--VNVALGTDGA 298 (424)
T ss_pred EEECHHHHHhhccCC-CCHHHHHHCC--CcEEEecCCC
Confidence 433221111000011 1245555544 5888999964
No 114
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=46.82 E-value=35 Score=27.53 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCceeEeeccCCCCceEEecCcC--hHHHHHHHHHHHHHHHHHHHHHcCC
Q 005679 569 QEVLADLHSLNISVEQLHAEAGKGQFEIALGHT--VAAKAADNLIFTREVLRAVARKHGL 626 (683)
Q Consensus 569 ~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~--~~l~aaD~~~~~k~~ik~vA~~~G~ 626 (683)
+++.+.|..+|+.++. .+ ..+++++..++- |.+..+| ++-+||+-+||
T Consensus 22 ~ei~~~L~~lg~~~~~--~~-~~~~~~v~~P~~R~Di~~~~D-------liEei~r~~Gy 71 (71)
T smart00874 22 EEIEEILKRLGFEVEV--SG-DDDTLEVTVPSYRFDILIEAD-------LIEEVARIYGY 71 (71)
T ss_pred HHHHHHHHHCCCeEEe--cC-CCCeEEEECCCCccccCcccH-------HHHHHHHHhCC
Confidence 5799999999999864 11 146788887774 5555554 78999999986
No 115
>PRK06361 hypothetical protein; Provisional
Probab=46.39 E-value=1.4e+02 Score=29.72 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=53.4
Q ss_pred EEEecCCCCcHHHHHHHHhhCCeeEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHH
Q 005679 265 FVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVV 344 (683)
Q Consensus 265 ~vl~H~g~p~~~e~~~la~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l 344 (683)
-|+.|+++.. .+.+..+ .-.++|+++...... +......++.+.+. + -+++.|||++ -|+... ..+.
T Consensus 115 dvlaHpd~~~-~~~~~~~-~~~~~~lEin~~~~~--~~~~~~~l~~a~~~-g-i~vv~~SDaH-~~~d~~-~~~~----- 181 (212)
T PRK06361 115 DILAHPGLIT-EEEAELA-AENGVFLEITARKGH--SLTNGHVARIAREA-G-APLVINTDTH-APSDLI-TYEF----- 181 (212)
T ss_pred cEecCcchhh-HHHHHHH-HHcCeEEEEECCCCc--ccchHHHHHHHHHh-C-CcEEEECCCC-CHHHHH-HHHH-----
Confidence 7889997643 3444333 335788887642111 11112344444444 4 3489999998 565321 1111
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcC
Q 005679 345 FSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (683)
Q Consensus 345 ~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l 380 (683)
+....++..++. +.+.+++-.|.+++++.
T Consensus 182 ---~~~i~~~~gl~~----~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 182 ---ARKVALGAGLTE----KELEEALENNPKLLLKR 210 (212)
T ss_pred ---HHHHHcCCCCCH----HHHHHHHHHhHHHHHHh
Confidence 122223344554 56999999999998863
No 116
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=45.27 E-value=1.4e+02 Score=33.21 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCee
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnV 288 (683)
+..+..+.+.|.++|+|+++|..-+....+. .-..| ++.+.+- .+-+-++++.|+.+--..++..++.. ++
T Consensus 189 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~--i~~l~~~-g~l~~r~~~~H~~~l~~~~~~~la~~--g~ 263 (430)
T PRK06038 189 EEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCS--VNYLDDI-GFLGPDVLAAHCVWLSDGDIEILRER--GV 263 (430)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEEecCCHHHHHHHHhc--CC
Confidence 3455567788999999999999754211100 00112 2222221 34467889999976555555555542 22
Q ss_pred EeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 289 y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
.+-.+-..+.....+. .-++++++.+ =++-+|||+.
T Consensus 264 ~v~~~P~~n~~~~~~~-~p~~~~~~~G--v~v~lGtD~~ 299 (430)
T PRK06038 264 NVSHNPVSNMKLASGI-APVPKLLERG--VNVSLGTDGC 299 (430)
T ss_pred EEEEChHHhhhhccCC-CCHHHHHHCC--CeEEEeCCCC
Confidence 2221111111000011 1355666643 3678999964
No 117
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=43.69 E-value=66 Score=26.54 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEee
Q 005679 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFV 631 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFm 631 (683)
-++.++...|.+.|++|.....=.-.|+|-..+...-+ .+..-.+++.++.+|+++|+.++.+
T Consensus 13 GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~~~l~i~v~ 75 (77)
T cd04893 13 GILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred hHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHHcCCEEEEE
Confidence 58889999999999999998888888888666655433 1356678888999999999998764
No 118
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=43.12 E-value=1.4e+02 Score=33.24 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEe
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~ 290 (683)
.+..+.+.+.++|+++++|..-+....+. .-..| +..+.+. ...+-++++.|+.+--..++..++.. ++.+
T Consensus 200 ~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~~~~~~~l~H~~~~~~~~~~~~~~~--g~~v 274 (445)
T PRK07228 200 LLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRN--IHYLDEV-GLTGEDLILAHCVWLDEEEREILAET--GTHV 274 (445)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHC-CCCCCCcEEEEEecCCHHHHHHHHHc--CCeE
Confidence 44556788999999999999643211100 00111 2222221 23456889999975444444444433 3333
Q ss_pred ccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
-.....+.....+ ..-++++++.+ -++.+|||+..
T Consensus 275 ~~~P~~~~~~~~~-~~p~~~~~~~G--v~v~lGtD~~~ 309 (445)
T PRK07228 275 THCPSSNLKLASG-IAPVPDLLERG--INVALGADGAP 309 (445)
T ss_pred EEChHHhhhcccc-cCcHHHHHHCC--CeEEEcCCCCc
Confidence 2111111000011 11355555543 46779999643
No 119
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=41.56 E-value=19 Score=31.55 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=21.2
Q ss_pred HHHHhCCCceeEeeccCCCCceEEecCc
Q 005679 573 ADLHSLNISVEQLHAEAGKGQFEIALGH 600 (683)
Q Consensus 573 ~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~ 600 (683)
+.--++|=+||.+--+ +|||||||+.-
T Consensus 52 de~~a~ge~ietIrI~-~pG~YeiNl~~ 78 (112)
T COG3364 52 DEDGAQGEPIETIRIL-RPGVYEINLES 78 (112)
T ss_pred chhhcccCcceEEEEe-cCceEEEehhh
Confidence 4445677788988877 89999999853
No 120
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=41.51 E-value=1.6e+02 Score=32.38 Aligned_cols=106 Identities=21% Similarity=0.186 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCC----------------------CCCCccchHHHHhhcCCCCceEEEecCCC
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----------------------RLSNPLHLRAILEDKRFSKCRFVLLHASY 272 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----------------------~~~~p~~L~~l~~~~~~P~l~~vl~H~g~ 272 (683)
.+..+.+.|+++|+|+++|..-+..+... ....| ++.+.+. .+-+-++++.|+.+
T Consensus 164 ~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~p--v~~l~~~-g~L~~~~~~~H~~~ 240 (381)
T cd01312 164 LAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATA--IDFLDML-GGLGTRVSFVHCVY 240 (381)
T ss_pred HHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCH--HHHHHHc-CCCCCCcEEEECCc
Confidence 34446788899999999999754211100 01123 2222221 23356889999976
Q ss_pred CcHHHHHHHHhhCCeeEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 273 PFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 273 p~~~e~~~la~~~pnVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
--.+++..++..--.|-.-. ..+.....| ..-++++++.+ -++-+|||+..
T Consensus 241 l~~~~~~~l~~~g~~v~~~P--~sn~~lg~g-~~p~~~~~~~G--v~v~lGtD~~~ 291 (381)
T cd01312 241 ANLEEAEILASRGASIALCP--RSNRLLNGG-KLDVSELKKAG--IPVSLGTDGLS 291 (381)
T ss_pred CCHHHHHHHHHcCCeEEECc--chhhhhcCC-CcCHHHHHHCC--CcEEEeCCCCc
Confidence 55556666665422221111 111000001 11345555543 47889999753
No 121
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=41.38 E-value=2.4e+02 Score=31.33 Aligned_cols=100 Identities=25% Similarity=0.260 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC---C-CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHh------h
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD---L-RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAY------V 284 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~---~-~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~------~ 284 (683)
.+..+.++++++|+|+++|..-...... . ....| ++.+...+..- -+.++.|+-+....+...++. .
T Consensus 199 ~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~--~~~~~~~g~l~-~~~~~~H~~~~~~~e~~~l~~~g~~v~~ 275 (421)
T COG0402 199 LLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARP--VERLDLLGLLG-SHTLLAHCVHLSEEELELLAESGASVVH 275 (421)
T ss_pred HHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCH--HHHHHHcCCCC-CCeEEEEeccCCHHHHHHHhhCCCeEEE
Confidence 3444567777999999999987532111 1 11222 22222222232 568999996655556555552 2
Q ss_pred CC--eeEeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCc
Q 005679 285 YP--QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASP 330 (683)
Q Consensus 285 ~p--nVy~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P 330 (683)
+| |.++..+ .+| +.++++.+ =++..|||+...-
T Consensus 276 cP~sN~~L~sG-~~p----------~~~~~~~g--v~v~~gTD~~~~~ 310 (421)
T COG0402 276 CPRSNLKLGSG-IAP----------VRRLLERG--VNVALGTDGAASN 310 (421)
T ss_pred CcchhccccCC-CCC----------HHHHHHcC--CCEEEecCCcccc
Confidence 23 6666655 332 23333433 5788999985543
No 122
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=40.22 E-value=37 Score=29.13 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhCCCceeEeeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEe
Q 005679 565 SPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (683)
Q Consensus 565 ~~~~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATF 630 (683)
...+..+.+.+.+.|++++-+..|+--..=-+.+-|. ||.-+-||.++|++++.++.++=+
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~-----a~~rvDFR~Lvr~L~~~f~~RIem 85 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYT-----AESRVDFRELVRDLAREFKTRIEM 85 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEE-----eCCcCcHHHHHHHHHHHhCceEEE
Confidence 5677888888999999999999999877777888777 888899999999999999987643
No 123
>PRK06687 chlorohydrolase; Validated
Probab=40.22 E-value=1.9e+02 Score=32.07 Aligned_cols=105 Identities=21% Similarity=0.186 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEe
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~ 290 (683)
.+..+++.|.++|+++++|.+-....... ....| ++.+.+- .+-+-++++.|+.+.-..+...++..--+|-.
T Consensus 197 ~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~--~~~l~~~-g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~ 273 (419)
T PRK06687 197 LLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRP--LAFLEEL-GYLDHPSVFAHGVELNEREIERLASSQVAIAH 273 (419)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCH--HHHHHHc-CCCCCCeEEEEEecCCHHHHHHHHHcCCeEEE
Confidence 34556788899999999999754211000 01112 1212221 33455788999976655666666543222211
Q ss_pred ccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
.+.. +.....|+. -++++++.+ =++-+|||+.
T Consensus 274 ~P~s--n~~l~~g~~-p~~~~~~~G--v~v~lGtD~~ 305 (419)
T PRK06687 274 NPIS--NLKLASGIA-PIIQLQKAG--VAVGIATDSV 305 (419)
T ss_pred CcHH--hhhhccCCC-cHHHHHHCC--CeEEEeCCCC
Confidence 1100 000000111 244555543 3677999963
No 124
>PRK12393 amidohydrolase; Provisional
Probab=39.08 E-value=3.2e+02 Score=30.71 Aligned_cols=107 Identities=12% Similarity=0.004 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCee
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~----~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnV 288 (683)
+..+..+.+.+.++|+|+++|.+.+...+. .....|. +.+ .+-.+-+-++++.|+.+.-..+...++..--+|
T Consensus 217 ~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~--~~l-~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v 293 (457)
T PRK12393 217 PELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPV--QFV-AEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGI 293 (457)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHH--HHH-HHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeE
Confidence 345556778899999999999975421100 0011221 111 211233557889999776555665665443222
Q ss_pred EeccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 289 y~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
-.-.. .+.....|+ .-++++++.+ -++.+|||+.
T Consensus 294 ~~~P~--sn~~lg~g~-~~~~~~~~~G--v~v~lGtD~~ 327 (457)
T PRK12393 294 AHCPQ--SNGRLGSGI-APALAMEAAG--VPVSLGVDGA 327 (457)
T ss_pred EECch--hhhhhcccC-CCHHHHHHCC--CeEEEecCCc
Confidence 21111 110000011 1355566643 3688999964
No 125
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=39.05 E-value=2.8e+02 Score=30.78 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCCC----CCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEe
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~~----~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~ 290 (683)
.+..+.+.|.+ |+++++|.+-+....+. .-..| ++.+.+. ..-+-++++.|+.+--..++..|+..--+|-.
T Consensus 208 ~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~--i~~l~~~-g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~ 283 (418)
T cd01313 208 QLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRP--VELLLDH-GHLDARWCLVHATHLTDNETLLLGRSGAVVGL 283 (418)
T ss_pred HHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCH--HHHHHHc-CCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEE
Confidence 44556788889 99999999654211110 01123 3333332 23366789999976555565666544333322
Q ss_pred ccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
-+..-.. . ..|+. -++++++.+ =++-+|||+.
T Consensus 284 ~P~sn~~-l-g~g~~-p~~~l~~~G--v~v~lGtD~~ 315 (418)
T cd01313 284 CPTTEAN-L-GDGIF-PAAALLAAG--GRIGIGSDSN 315 (418)
T ss_pred CCCchhh-c-cCCCC-CHHHHHHCC--CcEEEecCCC
Confidence 2221000 0 00111 244555543 3788999964
No 126
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=38.45 E-value=4.9e+02 Score=29.12 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=63.3
Q ss_pred HHHHHHhhCCCc-EEEecCCCCCCCC--CCCCCc-cchHHHHhhcCCCCceEEEecCCC------CcHHHHHHHHhhC--
Q 005679 218 SSLEVAQFLDLP-LQIHTGFGDKDLD--LRLSNP-LHLRAILEDKRFSKCRFVLLHASY------PFSKEASYLAYVY-- 285 (683)
Q Consensus 218 ~l~e~a~e~glp-vq~H~G~Gd~~~~--~~~~~p-~~L~~l~~~~~~P~l~~vl~H~g~------p~~~e~~~la~~~-- 285 (683)
.-++.|+++|.+ |.+|.|....... -.+..- ..|..++. +-.++++++=+++. ....++..+....
T Consensus 222 ~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la--~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~v~~ 299 (413)
T PTZ00372 222 DDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHE--ETKSVIIVLENTAGQKNSVGSKFEDLRDIIALVED 299 (413)
T ss_pred HHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHh--CcCCCEEEEecCCCCCCcccCCHHHHHHHHHhcCC
Confidence 346889999997 8999998421100 000000 13444544 34468888877632 1234566666543
Q ss_pred -C--eeEeccccccC---Cc-cHHHHHHHHHHHHhhCCCCcE--EEecCCC
Q 005679 286 -P--QVYLDFGLAIP---KL-SVQGMISSIKELLELAPTKKV--MFSTDAY 327 (683)
Q Consensus 286 -p--nVy~d~s~~~~---~~-~~~g~~~~l~~~le~~~~~ki--lfgSD~~ 327 (683)
+ .|-+|++-.|. +. .+++...+++++-+..|.++| |=..|+.
T Consensus 300 ~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk 350 (413)
T PTZ00372 300 KSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSK 350 (413)
T ss_pred cCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCC
Confidence 3 36778887652 11 234666677776677777776 5778865
No 127
>PRK06886 hypothetical protein; Validated
Probab=38.38 E-value=5.4e+02 Score=27.75 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHH----hhcCCCCceEEEecCC
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAIL----EDKRFSKCRFVLLHAS 271 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~----~~~~~P~l~~vl~H~g 271 (683)
-.+..++++|+++|+||.+|+..++... ...++.++ +. .+-. ++++.|+.
T Consensus 162 e~l~~~~~lA~~~g~~Id~Hlde~~~~~------~~~le~l~~~~~~~-Gl~g-rV~~sH~~ 215 (329)
T PRK06886 162 EAMDILLDTAKSLGKMVHVHVDQFNTPK------EKETEQLCDKTIEH-GMQG-RVVAIHGI 215 (329)
T ss_pred HHHHHHHHHHHHcCCCeEEeECCCCchh------HHHHHHHHHHHHHc-CCCC-CEEEEEec
Confidence 3456678999999999999998653110 01233333 33 4544 79999984
No 128
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=38.20 E-value=2e+02 Score=31.28 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=63.8
Q ss_pred ccchHHHHhhcCCCCceEEEecCCC-C-------cHHHHHHHHhhCC-eeEecccccc----CCccHHHHHHHHHHHHhh
Q 005679 248 PLHLRAILEDKRFSKCRFVLLHASY-P-------FSKEASYLAYVYP-QVYLDFGLAI----PKLSVQGMISSIKELLEL 314 (683)
Q Consensus 248 p~~L~~l~~~~~~P~l~~vl~H~g~-p-------~~~e~~~la~~~p-nVy~d~s~~~----~~~~~~g~~~~l~~~le~ 314 (683)
+..+.++++ --+.++|+.|.+- . --++...+.+... =|.+.+..-| ...........+..+.+.
T Consensus 255 ~atm~~aL~---vS~APVIFSHSsA~~vcns~rNVPDdVL~llk~NgGvVMVnfy~~~isc~~~A~v~~v~~Hi~hIr~V 331 (419)
T KOG4127|consen 255 DATMRDALE---VSRAPVIFSHSSAYSVCNSSRNVPDDVLQLLKENGGVVMVNFYPGFISCSDRATVSDVADHINHIRAV 331 (419)
T ss_pred HHHHHHHHH---hhcCceEeecccHHHHhcCccCCcHHHHHHHhhcCCEEEEEeecccccCCCcccHHHHHHHHHHHHHh
Confidence 344555555 4578899999841 0 0123333433332 2333332211 111123455678888899
Q ss_pred CCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcC
Q 005679 315 APTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (683)
Q Consensus 315 ~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l 380 (683)
+|.+.|-+|.|.-+.|.. .-+-+-.- .--.++++..+++.+. + |.+. ++++|..|+|+-
T Consensus 332 aG~~hIGlGg~yDGi~~~-PkGLEDVS-kYP~LiaeLl~r~~~~-~---E~~~-l~g~N~LRV~~~ 390 (419)
T KOG4127|consen 332 AGIDHIGLGGDYDGIPRV-PKGLEDVS-KYPDLIAELLERGWWE-E---ELIG-LAGGNLLRVFRQ 390 (419)
T ss_pred hccceeeccCCcCCcCCC-Ccchhhhh-hhHHHHHHHHhcCCcH-H---HHHH-HhcchHHHHHHH
Confidence 999999999985443311 00101000 0012345555555543 3 3333 999999999974
No 129
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=38.20 E-value=4e+02 Score=28.68 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCC
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGF 236 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~ 236 (683)
.-.+..+++.|.++|+++.+|.+-
T Consensus 192 ~~~~~~~~~~A~~~g~~v~~H~~e 215 (371)
T cd01296 192 LEQSRRILEAAKEAGLPVKIHADE 215 (371)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcC
Confidence 345566788999999999999974
No 130
>PRK07627 dihydroorotase; Provisional
Probab=37.78 E-value=2.7e+02 Score=31.06 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC---CCC--------CC-CCCCcc-----chHHHHhhcCCCCceEEEecCCCCcHHH
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGD---KDL--------DL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd---~~~--------~~-~~~~p~-----~L~~l~~~~~~P~l~~vl~H~g~p~~~e 277 (683)
.+..+++.+++.|.++.+|.--.. .+. .. ..+.|. .+..++.--+.-+.++.+.|.+.+..-+
T Consensus 162 ~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~ 241 (425)
T PRK07627 162 VLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAAGVA 241 (425)
T ss_pred HHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHH
Confidence 344566778889999999984311 000 00 112232 2222222113557999999998665544
Q ss_pred HHHHHhhC-CeeEeccccc
Q 005679 278 ASYLAYVY-PQVYLDFGLA 295 (683)
Q Consensus 278 ~~~la~~~-pnVy~d~s~~ 295 (683)
+..-++.. -+|+.+++..
T Consensus 242 ~i~~ak~~g~~vt~Ev~ph 260 (425)
T PRK07627 242 LVRAAKAEGLPVTCDVGVN 260 (425)
T ss_pred HHHHHHHCCCCeEEEeccc
Confidence 44444333 2677766653
No 131
>PRK11191 RNase E inhibitor protein; Provisional
Probab=37.58 E-value=2.2e+02 Score=26.73 Aligned_cols=92 Identities=23% Similarity=0.139 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCeeeeeeeeEEEEEeecccCCCCCcccCCCCCcccCCcccchHHHHHHHHHHHHhCCCceeE---
Q 005679 508 EALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQ--- 584 (683)
Q Consensus 508 ~~L~r~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ei~~~l~~~Gi~ve~--- 584 (683)
..=+++++.|. +.|-.+..-.++|+++.-. -.+-++++...+.++|..|..
T Consensus 12 ~~~~eVi~~L~-edGsd~~~~~~IEH~~~f~-------------------------d~~~lek~a~~a~klGyeV~~~ee 65 (138)
T PRK11191 12 EETREIIEELL-EDGSDPDALYTIEHHFSAD-------------------------DFDKLEKAAVEAFKLGYEVTDAEE 65 (138)
T ss_pred HHHHHHHHHHH-HcCCCcCCCEEEEEEEecC-------------------------CHHHHHHHHHHHHHcCCeeecccc
Confidence 33467778787 5699999999999887643 135567888899999999943
Q ss_pred eeccCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCC
Q 005679 585 LHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGL 626 (683)
Q Consensus 585 ~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~ 626 (683)
+-.|-+..-|-+.+.....+.+.+ +...-.-+-.+|+++|.
T Consensus 66 ~e~edg~~~~~~~~~~e~~l~~e~-I~~~~~~L~~LA~k~~g 106 (138)
T PRK11191 66 LELEDGDVIFCCDAVSEVALNAEL-IDAQVEQLLALAEKFDV 106 (138)
T ss_pred cccCCCCeEEEEEEEecCCCCHHH-HHHHHHHHHHHHHHhCC
Confidence 234556556777776666665444 33334445678888875
No 132
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=37.19 E-value=3.7e+02 Score=29.06 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhCCCcEEEecCC
Q 005679 215 IFISSLEVAQFLDLPLQIHTGF 236 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~ 236 (683)
.+..+++.|.++|+|+.+|.+-
T Consensus 198 ~~~~~~~~A~~~g~~v~~H~~e 219 (377)
T TIGR01224 198 QSRRILQAAQEAGLPVKLHAEE 219 (377)
T ss_pred HHHHHHHHHHHCCCCEEEEecC
Confidence 4566788999999999999974
No 133
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=37.03 E-value=54 Score=26.65 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCceeEeeccCCCCceEEecCc--ChHHHHHHHHHHHHHHHHHHHHHcCC
Q 005679 568 FQEVLADLHSLNISVEQLHAEAGKGQFEIALGH--TVAAKAADNLIFTREVLRAVARKHGL 626 (683)
Q Consensus 568 ~~ei~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~--~~~l~aaD~~~~~k~~ik~vA~~~G~ 626 (683)
.+++.+.|+.+|+.++.. ..+.+++..++ .|....+| ++-+||+-+||
T Consensus 21 ~~~i~~~L~~lg~~~~~~----~~~~~~v~vP~~R~Di~~~~D-------liEEiaR~yGY 70 (70)
T PF03484_consen 21 PEEIIKILKRLGFKVEKI----DGDTLEVTVPSYRFDIEHEED-------LIEEIARIYGY 70 (70)
T ss_dssp HHHHHHHHHHTT-EEEE-----CTTEEEEEEETTSTT-SSHHH-------HHHHHHHHHTG
T ss_pred HHHHHHHHHHCCCEEEEC----CCCEEEEEcCCCcCCcCcccH-------HHHHHHHHhCC
Confidence 478999999999999886 67788888887 47777776 77888888886
No 134
>PTZ00124 adenosine deaminase; Provisional
Probab=36.25 E-value=1.4e+02 Score=32.80 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHhhcc---cceeeeeeeccccCCCCCCCCCHHHHHHHHHHHHhc---CCCCccCchhhhhHHHHHHH
Q 005679 147 TLDVFIETFLKQLRSAAN---KIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRS---GKPVRITNKSLIDYIFISSL 220 (683)
Q Consensus 147 ~~~~~~~al~~~l~~~~~---~~vgfksi~~y~~gl~~~~~~~~~ea~~~~~~~l~~---~~~~~~~~~~l~d~~~~~l~ 220 (683)
+++++++++.+.++.+.. .-+..+.|.|-.+..+ .+.+.+.++-+.+. -.+..+...+.....+.+++
T Consensus 139 ~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~R~~~------~e~a~e~~~~a~~~~~~vvGiDLaG~E~~~~~f~~~f 212 (362)
T PTZ00124 139 DIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGHD------AAPIKESADFCLKHKADFVGFDHAGHEVDLKPFKDIF 212 (362)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCceEeEEEEecCCCC------HHHHHHHHHHHHhccCCeEEEeccCCCCCcHHHHHHH
Confidence 467777777777766422 2245666666644432 34444443333321 11122221221123467889
Q ss_pred HHHhhCCCcEEEecCC
Q 005679 221 EVAQFLDLPLQIHTGF 236 (683)
Q Consensus 221 e~a~e~glpvq~H~G~ 236 (683)
+.|.+.|+++-+|.|-
T Consensus 213 ~~Ar~~Gl~~t~HaGE 228 (362)
T PTZ00124 213 DYVREAGVNLTVHAGE 228 (362)
T ss_pred HHHHHCCCCEEEEeCC
Confidence 9999999999999996
No 135
>PRK14085 imidazolonepropionase; Provisional
Probab=35.88 E-value=3.9e+02 Score=29.13 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCC-CCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEe
Q 005679 212 IDYIFISSLEVAQFLDLPLQIHTGF-GDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (683)
Q Consensus 212 ~d~~~~~l~e~a~e~glpvq~H~G~-Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~ 290 (683)
.+..+..+++.+.++|+++.+|.+- ++ ...+..+++ +.- ..+.|+.+.-..++..++..- +..
T Consensus 205 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~---------~~~v~~~~~---~g~--~~i~H~~~l~~~~~~~la~~g--v~~ 268 (382)
T PRK14085 205 DEDQSRRVLTAGRAAGLGLRVHGNQLGP---------GPGVRLAVE---LGA--ASVDHCTYLTDADVDALAGSG--TVA 268 (382)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEeCcccC---------ChHHHHHHH---cCC--CcHHHhCCCCHHHHHHHHHcC--CEE
Confidence 3445566788999999999999852 11 111333333 111 125577554434444444322 222
Q ss_pred ccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHH
Q 005679 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIF 370 (683)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~ 370 (683)
-.....+.....++ .-++++++.+ =++.+|||+..+. .+. ......+ ...+....++..+ ..+ ..
T Consensus 269 ~~~P~~~~~~~~~~-~~~~~l~~aG--v~v~lgsD~~~~~--~~~--~~~~~~~----~~~~~~~~l~~~~---al~-~a 333 (382)
T PRK14085 269 TLLPGAEFSTRQPY-PDARRLLDAG--VTVALASDCNPGS--SYT--SSMPFCV----ALAVRQMGMTPAE---AVW-AA 333 (382)
T ss_pred EECcHHHHhcCCCC-chHHHHHHCC--CcEEEEeCCCCCC--ChH--HHHHHHH----HHHHHhcCCCHHH---HHH-HH
Confidence 11111100000111 2466666654 4788999963211 111 1111111 1122234566543 344 44
Q ss_pred HHHHHHHhcCC
Q 005679 371 ALNAAQFYKIN 381 (683)
Q Consensus 371 ~~NA~rly~l~ 381 (683)
-.|++++++++
T Consensus 334 T~~~A~~lg~~ 344 (382)
T PRK14085 334 TAGGARALRRD 344 (382)
T ss_pred HHHHHHHcCCC
Confidence 56788888885
No 136
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=35.87 E-value=1.4e+02 Score=30.74 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=52.4
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEeccccc
Q 005679 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (683)
Q Consensus 216 ~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~s~~ 295 (683)
+..+++.|.++|+|+++|++-..... ....++.+++ ..|+ + +.|+.+--.++...++.. ++.+-.+..
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~-----g~~~i~~~~~--~~~~--~-i~H~~~l~~~~~~~la~~--g~~v~~~P~ 194 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV-----GMTDIERALD--LEPD--L-LVHGTHLTDEDLELVREN--GVPVVLCPR 194 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC-----CchhHHHHHh--CCCC--E-EEEcCCCCHHHHHHHHHc--CCcEEEChh
Confidence 67789999999999999997542111 1112555555 2343 3 579866555555555543 222221111
Q ss_pred cCCccHHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 005679 296 IPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (683)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (683)
.+.....|. ..++++++.+ -++.+|||+..
T Consensus 195 sn~~l~~g~-~p~~~l~~~G--v~v~lGtD~~~ 224 (263)
T cd01305 195 SNLYFGVGI-PPVAELLKLG--IKVLLGTDNVM 224 (263)
T ss_pred hHHHhCCCC-CCHHHHHHCC--CcEEEECCCCc
Confidence 100000011 1355666654 58889999643
No 137
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=34.87 E-value=68 Score=35.12 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=36.6
Q ss_pred eeccCCCCceEEecCcChHHH-HHHHHHHHHHHHHHHHHHcCCeEEee
Q 005679 585 LHAEAGKGQFEIALGHTVAAK-AADNLIFTREVLRAVARKHGLLATFV 631 (683)
Q Consensus 585 ~h~E~~pGQ~Ei~l~~~~~l~-aaD~~~~~k~~ik~vA~~~G~~ATFm 631 (683)
+--|-| ||||++..|.+.+. +|-..=.--.+||++|...|+...++
T Consensus 91 IslEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvGl 137 (456)
T COG3572 91 ISLEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVGL 137 (456)
T ss_pred EEeccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEee
Confidence 444767 99999999986654 56666666789999999999998865
No 138
>PRK09236 dihydroorotase; Reviewed
Probab=34.69 E-value=5.7e+02 Score=28.57 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=20.2
Q ss_pred hhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 350 DTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 350 ~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+.+.++.+++.+ +-+.+..|.+++|+++
T Consensus 341 ~~v~~~~~~~~~----~~~~~t~~pA~~lgl~ 368 (444)
T PRK09236 341 ELVHEGKLSLEK----VVEKTSHAPAILFDIK 368 (444)
T ss_pred HHHHhcCCCHHH----HHHHHHHhHHHhcCCC
Confidence 456667788754 5556678888999984
No 139
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.36 E-value=1e+02 Score=23.68 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCceeEeeccCC--CCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeE
Q 005679 566 PVFQEVLADLHSLNISVEQLHAEAG--KGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLA 628 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E~~--pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~A 628 (683)
-.+.++...+.+.|+.|.+++.... +|.-.+.+.-.+ ...+++.-+++|+.+
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-----------~~~~~~~L~~~G~~v 64 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-----------IEKAIEVLQERGVEL 64 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-----------HHHHHHHHHHCCceE
Confidence 3577899999999999987764332 344445444433 234455566677653
No 140
>PRK09356 imidazolonepropionase; Validated
Probab=32.62 E-value=4.5e+02 Score=28.75 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhCCCcEEEecCC
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGF 236 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~ 236 (683)
-.+..+++.|.++|+++.+|..-
T Consensus 222 ~~l~~~~~~A~~~g~~v~~H~~~ 244 (406)
T PRK09356 222 EQSERVLEAAKALGLPVKIHAEQ 244 (406)
T ss_pred HHHHHHHHHHHHCCCCEEEEEec
Confidence 34556788899999999999963
No 141
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.41 E-value=91 Score=25.20 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCCceeEeecc--CCCCceEEecCcChHHHHH-HHHHHHHHHHHHHHHHcCCe
Q 005679 566 PVFQEVLADLHSLNISVEQLHAE--AGKGQFEIALGHTVAAKAA-DNLIFTREVLRAVARKHGLL 627 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E--~~pGQ~Ei~l~~~~~l~aa-D~~~~~k~~ik~vA~~~G~~ 627 (683)
-++.+|...|.+.|+.|..++.- ...+.|.+.+.-.-+ +. -+.-.++..+..+|.+.|+.
T Consensus 11 Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 11 GIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCc
Confidence 57899999999999999999876 466677665543322 11 13667788888888887753
No 142
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=32.33 E-value=76 Score=35.56 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCCC---CC-CCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeE
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDL---RL-SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~---~~-~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy 289 (683)
..+..+.++|+++|+|+++|.+-+....+. .+ ..| ++.+.+. .+-+-++++.||.+.-..+...|+..--+|-
T Consensus 205 ~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~--v~~l~~~-Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~ 281 (442)
T PRK07203 205 ATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDI--VERLADF-GLLGEKTLAAHCIYLSDEEIDLLKETDTFVV 281 (442)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCH--HHHHHhC-CCCCCCcEEEEeecCCHHHHHHHHhcCCeEE
Confidence 345557889999999999999875321110 01 122 2323222 2335688999997665556666654332322
Q ss_pred eccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
..+.. +.....|. .-+.++++.+. ++-.|||+.
T Consensus 282 ~~P~s--n~~l~~g~-~p~~~~~~~Gv--~v~lGtD~~ 314 (442)
T PRK07203 282 HNPES--NMGNAVGY-NPVLEMIKNGI--LLGLGTDGY 314 (442)
T ss_pred ECchh--hhhcccCC-CCHHHHHHCCC--eEEEcCCCC
Confidence 21111 00000011 12445555443 477999974
No 143
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.35 E-value=90 Score=32.99 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCCceeEeecc--CCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeec
Q 005679 566 PVFQEVLADLHSLNISVEQLHAE--AGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E--~~pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpK 633 (683)
-++.++...|.+.|++|+.+... .+.|+|.+.+.-.-| +..+.-.+|+.+..+|.+.|+.++.-+.
T Consensus 19 GIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~~~l~l~i~i~~~ 86 (286)
T PRK13011 19 GIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIAARFGMQWELHDP 86 (286)
T ss_pred CHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHHHHhCcEEEEeec
Confidence 58899999999999999999985 678888876554322 1123778899999999999999887754
No 144
>PRK06380 metal-dependent hydrolase; Provisional
Probab=30.16 E-value=6.3e+02 Score=27.80 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEe
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYL 290 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd~~~~----~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~ 290 (683)
.+..+.+.+.++|+++++|..-+..... .....| ++.+..- ..-+.++++.|+.+.-..+...++..--.|-.
T Consensus 187 ~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--ie~~~~~-g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~ 263 (418)
T PRK06380 187 TYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERP--VEHLEKI-GFLNSKLIAAHCVWATYHEIKLLSKNGVKVSW 263 (418)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCH--HHHHHHC-CCCCCCeEEEEeecCCHHHHHHHHHcCCEEEE
Confidence 4455678889999999999976421110 001122 1111111 12345789999976544455555543222222
Q ss_pred ccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
....-.. ....+ ..-++++++.+ =++.+|||+.
T Consensus 264 ~P~sn~~-l~~~g-~~p~~~~~~~G--v~v~lGTD~~ 296 (418)
T PRK06380 264 NSVSNFK-LGTGG-SPPIPEMLDNG--INVTIGTDSN 296 (418)
T ss_pred CHHHHHh-hccCC-CCcHHHHHHCC--CeEEEcCCCC
Confidence 1111000 00001 11355666654 3688999974
No 145
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=28.95 E-value=1.6e+02 Score=29.20 Aligned_cols=63 Identities=8% Similarity=0.072 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCceeEeeccCCCC----------ceEEecCcChHHHHHHHHHHHHHHHHHHHHHcCCeEEeeec
Q 005679 565 SPVFQEVLADLHSLNISVEQLHAEAGKG----------QFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (683)
Q Consensus 565 ~~~~~ei~~~l~~~Gi~ve~~h~E~~pG----------Q~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpK 633 (683)
--++.++.+.|.+.||.|+.+.++..+. ++|+.++..-- +-.+|..+.++|...++.+++=|.
T Consensus 106 PGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~------~~~L~~~l~~l~~eL~vd~~l~~~ 178 (190)
T PRK11589 106 PHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD------AANIEQAFKALCTELNAQGSINVV 178 (190)
T ss_pred CCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC------HHHHHHHHHHHHHHhCceEEEEEe
Confidence 3589999999999999999999997664 46666666522 345788899999999999999887
No 146
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=27.59 E-value=1.8e+02 Score=31.67 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHHhhc---ccceeeeeeeccccCCCCCCCCCHHHHHHHHHHHHh------c-CCCCccCchhh---hh
Q 005679 147 TLDVFIETFLKQLRSAA---NKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLR------S-GKPVRITNKSL---ID 213 (683)
Q Consensus 147 ~~~~~~~al~~~l~~~~---~~~vgfksi~~y~~gl~~~~~~~~~ea~~~~~~~l~------~-~~~~~~~~~~l---~d 213 (683)
+++++++++.+.++.+. +.-++.+.|.|-.+.+. .+++...+..+.. . -.+..+...+. ..
T Consensus 105 ~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~R~~~------~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~ 178 (345)
T cd01321 105 DYEETVQLLEEVVEKFKKTHPDFIGLKIIYATLRNFN------DSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPL 178 (345)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCC------HHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCH
Confidence 46777777776665542 11246667777655442 3333333222211 0 01222222221 12
Q ss_pred HHHHHHHHHHhhCC--CcEEEecCCC
Q 005679 214 YIFISSLEVAQFLD--LPLQIHTGFG 237 (683)
Q Consensus 214 ~~~~~l~e~a~e~g--lpvq~H~G~G 237 (683)
..+.++++.+.+.| +++.+|.|-.
T Consensus 179 ~~f~~~f~~ar~~g~~l~~t~HAGE~ 204 (345)
T cd01321 179 LDFLPQLLWFPKQCAEIPFFFHAGET 204 (345)
T ss_pred HHHHHHHHHHHHhCCCCceEeecCCC
Confidence 34578899999999 9999999963
No 147
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=27.23 E-value=7.6e+02 Score=26.05 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCC
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGF 236 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~ 236 (683)
.-.+..+++.|.++|+++.+|.|-
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E 195 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGE 195 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCC
Confidence 345677899999999999999974
No 148
>PRK07572 cytosine deaminase; Validated
Probab=26.32 E-value=2.9e+02 Score=30.68 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhCCCcEEEecCCC
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFG 237 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~G 237 (683)
.+..+.+.|+++|+++.+|+..+
T Consensus 192 ~l~~~~~~A~~~g~~v~~H~~e~ 214 (426)
T PRK07572 192 SVRLLCEIAAERGLRVDMHCDES 214 (426)
T ss_pred HHHHHHHHHHHcCCCeEEEECCC
Confidence 45567899999999999999755
No 149
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=25.89 E-value=1.3e+02 Score=26.75 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhhcCCCChhHHHHHHHHHHHH
Q 005679 341 REVVFSVLRDTCIDEDLSVGEAIEVAKDIFAL 372 (683)
Q Consensus 341 r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~ 372 (683)
++-+..+..++|++|+++.++|.+.+++++..
T Consensus 23 ~ek~~klvDelVkkGeln~eEak~~vddl~~q 54 (108)
T COG3937 23 AEKVQKLVDELVKKGELNAEEAKRFVDDLLRQ 54 (108)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44566788899999999999999999888753
No 150
>PRK09060 dihydroorotase; Validated
Probab=25.62 E-value=7.8e+02 Score=27.55 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCC
Q 005679 348 LRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (683)
Q Consensus 348 l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~ 381 (683)
+-..|.+|.+++++ +-+.+..|.+++||+.
T Consensus 335 ~~~~v~~g~l~~~~----~~~~~s~~pa~~~gl~ 364 (444)
T PRK09060 335 MLDHVNAGRLSLER----FVDLTSAGPARIFGIA 364 (444)
T ss_pred HHHHHHcCCCCHHH----HHHHHhHhHHHHhCCC
Confidence 33457788898755 6777889999999993
No 151
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=24.86 E-value=2.2e+02 Score=22.61 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHH--cChhhHHHHHHh
Q 005679 53 FKRNLKNIAELYGCDSSLQAVEEYRRA--AGLQSICSICFE 91 (683)
Q Consensus 53 ~~~~~~~l~~~fg~~~~~~~i~~~~~~--l~~~~~~r~ll~ 91 (683)
.+.++.-+++.-|+ .+-++|++.-.+ .++++.+++||.
T Consensus 5 ~rk~VQ~iKEiv~~-hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 5 SRKTVQSIKEIVGC-HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45577888999999 778889998877 599999999996
No 152
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=24.21 E-value=4.1e+02 Score=30.91 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=61.2
Q ss_pred HHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeEeccccccCCc
Q 005679 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKL 299 (683)
Q Consensus 220 ~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy~d~s~~~~~~ 299 (683)
++.+.++|+++..|... - ....|..+++ .-+...|.+... .|+. .+..-.+|+++-.-..
T Consensus 168 i~~a~~~g~~I~gHap~-l--------~~~eL~~~~~------aGi~~dHe~~s~-~ea~--e~~~~Gm~~~ir~gs~-- 227 (552)
T TIGR01178 168 INSARKRNKVIDGHCPG-L--------SGKLLNKYIS------AGISNDHESTSI-EEAR--EKLRLGMKLMIREGSA-- 227 (552)
T ss_pred HHHHHhCCCEEEecCCC-C--------CHHHHHHHHH------cCCCCCcCcCCH-HHHH--HHHHCCCEEEEeCCcc--
Confidence 35678999999999741 1 1123444443 334456765432 2222 2222345554322110
Q ss_pred cHHHHHHHHHHHHhhCCCCcEEEecCCCCCccchhhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhc
Q 005679 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYK 379 (683)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~Pe~~~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~ 379 (683)
++ ... .+..++......+++|+||.+. |... ...- .+...+...++.| ++..+ +=+..-.|+++.|+
T Consensus 228 ~~-n~~-~~~~~~~~~~~~~~~l~TD~~~-~~~~-~~~g----~l~~~v~~ai~~g-~~~~~----Al~maT~npA~~lg 294 (552)
T TIGR01178 228 AK-NLE-ALHPLINEKNCRSLMLCTDDRH-VNDI-LNEG----HINHIVRRAIEHG-VDPFD----ALQMASINPAEHFG 294 (552)
T ss_pred cc-CHH-HHHHHHhhcCCceEEEEeCCCC-hhHH-HhcC----CHHHHHHHHHHcC-CCHHH----HHHHHHHHHHHHcC
Confidence 00 111 2222222235588999999642 3211 1100 1222233333333 56543 45556789999999
Q ss_pred CC
Q 005679 380 IN 381 (683)
Q Consensus 380 l~ 381 (683)
++
T Consensus 295 l~ 296 (552)
T TIGR01178 295 ID 296 (552)
T ss_pred CC
Confidence 96
No 153
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.92 E-value=2.7e+02 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCceeEeecc
Q 005679 567 VFQEVLADLHSLNISVEQLHAE 588 (683)
Q Consensus 567 ~~~ei~~~l~~~Gi~ve~~h~E 588 (683)
.+.++.+.|.+.||.|+++..-
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~ 35 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIA 35 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEE
Confidence 6788999999999999988863
No 154
>PRK05985 cytosine deaminase; Provisional
Probab=22.86 E-value=8.7e+02 Score=26.41 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCC
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGFG 237 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~G 237 (683)
..+..+++.|+++|+|+.+|+...
T Consensus 191 ~~l~~~~~~A~~~g~~i~~Hv~e~ 214 (391)
T PRK05985 191 GQLDIVFGLAERHGVGIDIHLHEP 214 (391)
T ss_pred HHHHHHHHHHHHhCCCcEEeeCCC
Confidence 456667899999999999998653
No 155
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=22.71 E-value=9.3e+02 Score=27.04 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEecCCCC-----------CCCCCC-CCCcc--------chHHHHhhcCCCCceEEEecC
Q 005679 211 LIDYIFISSLEVAQFLDLPLQIHTGFGD-----------KDLDLR-LSNPL--------HLRAILEDKRFSKCRFVLLHA 270 (683)
Q Consensus 211 l~d~~~~~l~e~a~e~glpvq~H~G~Gd-----------~~~~~~-~~~p~--------~L~~l~~~~~~P~l~~vl~H~ 270 (683)
+..-.+...++.+.+.|.++.+|.--.+ .+..+. ...|. ..-.+++ .-+.++.++|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~---~~g~~vhi~Hi 231 (430)
T COG0044 155 LDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELAR---ATGARVHICHI 231 (430)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHH---HhCCcEEEEEc
Confidence 4444555677888899999999984421 011111 11221 1122333 44589999999
Q ss_pred CCCcHHHHHHHHhhC-CeeEecccccc---------------CCccH---HHHHHHHHHHHhhCCCCcEEEecCCCCCcc
Q 005679 271 SYPFSKEASYLAYVY-PQVYLDFGLAI---------------PKLSV---QGMISSIKELLELAPTKKVMFSTDAYASPE 331 (683)
Q Consensus 271 g~p~~~e~~~la~~~-pnVy~d~s~~~---------------~~~~~---~g~~~~l~~~le~~~~~kilfgSD~~~~Pe 331 (683)
+....-++..-+..- .+|..+++.-. -..+| ..-+..|.+.+..+.+| +.+||-- |-
T Consensus 232 St~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID--~iasDHa--Ph 307 (430)
T COG0044 232 STKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVID--VIASDHA--PH 307 (430)
T ss_pred CCHHHHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCCc--EEEcCCC--CC
Confidence 865544444444333 34555444311 01111 12233444443322222 3678821 21
Q ss_pred ch----------hhhHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q 005679 332 TY----------FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (683)
Q Consensus 332 ~~----------~~~~~~~r~~l~~~l~~~v~~g~l~~~ea~~~~~~I~~~NA~rly~l~~ 382 (683)
.. +.+.-.+...+--++. .|.+|.+++.+ .-+.+..|.+|+|||..
T Consensus 308 t~eeK~~~f~~ap~G~~glE~~lpl~l~-lv~~g~lsl~~----~v~~~S~nPA~ifgl~~ 363 (430)
T COG0044 308 TLEEKRLPFEEAPSGIPGLETALPLLLT-LVKKGRLSLER----LVELLSTNPARIFGLPP 363 (430)
T ss_pred CHHHhccchhhCCCCCccHHHHHHHHHH-HHHcCCcCHHH----HHHHHhhCHHHHhCCCC
Confidence 10 0111122334444455 88999999865 67778899999999964
No 156
>PRK09230 cytosine deaminase; Provisional
Probab=22.40 E-value=7.4e+02 Score=27.57 Aligned_cols=57 Identities=14% Similarity=0.069 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCCCCCCCCCCccchHHHHhhcCCCCceEEEecCCCC
Q 005679 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP 273 (683)
Q Consensus 213 d~~~~~l~e~a~e~glpvq~H~G~Gd~~~~~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p 273 (683)
...+..+++.|+++|+++.+|.+-........ ...+..+++...+ +-++++.|+.+-
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~---~~~~~~~~~~~gl-~~~v~~~H~~~l 250 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEIDDEQSRF---VETVAALAHREGM-GARVTASHTTAM 250 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCCcchHH---HHHHHHHHHHhCC-CCCEEEEecCch
Confidence 34566788999999999999998642211100 0012233332233 557999999654
No 157
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=21.26 E-value=41 Score=31.04 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=14.3
Q ss_pred CCCceeEeeccCCCCceEEecC
Q 005679 578 LNISVEQLHAEAGKGQFEIALG 599 (683)
Q Consensus 578 ~Gi~ve~~h~E~~pGQ~Ei~l~ 599 (683)
.+-.||++-=. +||||||||.
T Consensus 82 ~~~~iESIrI~-~pG~YElNL~ 102 (131)
T PF09845_consen 82 LNDRIESIRIL-EPGSYELNLE 102 (131)
T ss_pred cccCcceEEEe-cCceEEecHH
Confidence 34455555443 8999999984
No 158
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=21.08 E-value=9.3e+02 Score=26.95 Aligned_cols=105 Identities=20% Similarity=0.170 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCCCCC----CCCCCccchHHHHhhcCCCCceEEEecCCCCcHHHHHHHHhhCCeeE
Q 005679 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (683)
Q Consensus 214 ~~~~~l~e~a~e~glpvq~H~G~Gd~~~~----~~~~~p~~L~~l~~~~~~P~l~~vl~H~g~p~~~e~~~la~~~pnVy 289 (683)
-.+..+.+.+ ++|+|+++|.+-+..... ..-..| ++.+.+. ...+-++++.|+.+.-..+...++..--+|-
T Consensus 216 e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~--~~~l~~~-g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~ 291 (456)
T PRK09229 216 DQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARP--VEWLLDH-APVDARWCLVHATHLTDAETARLARSGAVAG 291 (456)
T ss_pred HHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCH--HHHHHHc-CCCCCCeEEEeeccCCHHHHHHHHHcCCeEE
Confidence 3455567888 999999999964321110 011223 2223332 2335678999998766566666654322222
Q ss_pred eccccccCCccHHHHHHHHHHHHhhCCCCcEEEecCCC
Q 005679 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (683)
Q Consensus 290 ~d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (683)
.-... +.....|. .-++++++.+ =++-+|||+.
T Consensus 292 ~~P~s--n~~lg~g~-~p~~~l~~~G--v~v~lGtD~~ 324 (456)
T PRK09229 292 LCPTT--EANLGDGI-FPAVDYLAAG--GRFGIGSDSH 324 (456)
T ss_pred ECchh--hhhhcCCC-CCHHHHHHCC--CeEEEecCCC
Confidence 21111 10000011 1245555543 3678999964
No 159
>PRK02134 hypothetical protein; Provisional
Probab=20.83 E-value=4.6e+02 Score=27.05 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCC--CCCC--------C--CCCCccchHHHHhh--cCCCCceEEEecCCCC
Q 005679 215 IFISSLEVAQFLDLPLQIHTGFGD--KDLD--------L--RLSNPLHLRAILED--KRFSKCRFVLLHASYP 273 (683)
Q Consensus 215 ~~~~l~e~a~e~glpvq~H~G~Gd--~~~~--------~--~~~~p~~L~~l~~~--~~~P~l~~vl~H~g~p 273 (683)
+...+.++|+|+|+|+-+..+... .+.. . ...++..+...++. ...+++.-+++|+|+.
T Consensus 135 v~~~~~~la~ey~lpvR~~~~~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~~g~~eim~HPg~~ 207 (249)
T PRK02134 135 IFPIVARFAAEYGVPLRIDSNAGDLPANLRSSDGFSSDFYGEEVSEDLFLQLLDRSKHRGEQSLEVMCHPAFI 207 (249)
T ss_pred HHHHHHHHHHHcCCcEEecccccccccCCccccccchhhhcCCCCHHHHHHHHHhhhccCCCeEEEEeCCCCC
Confidence 444466889999999886633211 1110 0 11122334444441 0135678899999963
No 160
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.48 E-value=2.1e+02 Score=30.30 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCCceeEeeccC--CCCceEEecCcCh-HHHHHHHHHHHHHHHHHHHHHcCCeEEeeec
Q 005679 566 PVFQEVLADLHSLNISVEQLHAEA--GKGQFEIALGHTV-AAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (683)
Q Consensus 566 ~~~~ei~~~l~~~Gi~ve~~h~E~--~pGQ~Ei~l~~~~-~l~aaD~~~~~k~~ik~vA~~~G~~ATFmpK 633 (683)
-++.++.+.|.+.|++|+.+..-. -.|+|.+.+.-.- +. .+++-.+++.+.+++.+.|+.+++..-
T Consensus 18 GIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~--~~~~~~L~~~L~~l~~~l~l~i~l~~~ 86 (286)
T PRK06027 18 GIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL--IFNLETLRADFAALAEEFEMDWRLLDS 86 (286)
T ss_pred cHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC--CCCHHHHHHHHHHHHHHhCCEEEEccc
Confidence 588999999999999999998887 6778766544321 10 122667899999999999999987654
Done!