Query 005682
Match_columns 683
No_of_seqs 151 out of 753
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 12:09:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02255 H(+) -translocating i 100.0 2E-218 5E-223 1809.4 65.8 681 3-683 1-682 (765)
2 TIGR01104 V_PPase vacuolar-typ 100.0 3E-213 7E-218 1758.8 59.1 617 11-683 3-619 (697)
3 PLN02277 H(+) -translocating i 100.0 6E-209 1E-213 1733.2 57.5 619 18-683 2-663 (730)
4 PF03030 H_PPase: Inorganic H+ 100.0 2E-207 4E-212 1725.2 48.1 606 19-683 1-619 (682)
5 PRK00733 hppA membrane-bound p 100.0 2E-203 4E-208 1679.3 56.6 582 59-683 2-594 (666)
6 COG3808 OVP1 Inorganic pyropho 100.0 3E-201 7E-206 1602.5 50.1 609 11-683 5-631 (703)
7 PF03030 H_PPase: Inorganic H+ 79.3 29 0.00062 41.8 13.5 69 570-647 595-667 (682)
8 COG3104 PTR2 Dipeptide/tripept 77.8 56 0.0012 38.1 14.9 77 245-349 132-209 (498)
9 COG1174 OpuBB ABC-type proline 55.0 31 0.00066 36.2 6.3 50 458-524 71-122 (221)
10 TIGR00833 actII Transport prot 51.8 1.3E+02 0.0028 37.3 12.1 92 457-559 198-295 (910)
11 PRK11677 hypothetical protein; 49.9 21 0.00045 34.7 3.9 33 405-437 3-35 (134)
12 PF06800 Sugar_transport: Suga 47.7 2.3E+02 0.0051 30.6 11.7 100 330-455 105-206 (269)
13 COG3808 OVP1 Inorganic pyropho 44.9 2.4E+02 0.0051 33.6 11.8 132 329-501 8-151 (703)
14 PF12670 DUF3792: Protein of u 42.7 2.8E+02 0.0062 25.8 11.0 102 298-417 14-115 (116)
15 PF03649 UPF0014: Uncharacteri 38.8 1.1E+02 0.0023 32.6 7.5 74 567-651 117-193 (250)
16 PF00344 SecY: SecY translocas 38.1 1.3E+02 0.0029 33.0 8.4 116 542-661 201-324 (346)
17 PF08006 DUF1700: Protein of u 34.4 4.3E+02 0.0094 26.1 10.6 19 193-211 142-160 (181)
18 TIGR01104 V_PPase vacuolar-typ 32.8 2.6E+02 0.0057 34.1 10.1 143 141-296 510-675 (697)
19 PTZ00219 Sec61 alpha subunit; 31.6 1.2E+02 0.0026 35.1 7.0 70 585-657 372-441 (474)
20 COG4177 LivM ABC-type branched 31.1 49 0.0011 36.2 3.7 49 520-569 187-238 (314)
21 PRK15374 pathogenicity island 30.5 3.1E+02 0.0068 32.6 9.9 88 501-612 369-460 (593)
22 PLN02255 H(+) -translocating i 28.9 3.4E+02 0.0075 33.4 10.3 143 141-296 573-739 (765)
23 PRK00733 hppA membrane-bound p 28.5 3.3E+02 0.0071 33.2 9.9 144 140-296 484-645 (666)
24 TIGR00921 2A067 The (Largely A 27.8 3.9E+02 0.0084 31.8 10.6 90 459-559 220-310 (719)
25 PF12331 DUF3636: Protein of u 27.2 47 0.001 32.9 2.4 22 487-508 49-70 (149)
26 PF02355 SecD_SecF: Protein ex 26.7 2.7E+02 0.0059 28.2 7.8 57 603-667 103-159 (189)
27 PRK01610 putative voltage-gate 26.6 4E+02 0.0088 30.1 10.0 16 570-585 321-336 (418)
28 PF03672 UPF0154: Uncharacteri 26.5 1.1E+02 0.0023 26.5 4.1 31 575-619 3-33 (64)
29 TIGR00245 conserved hypothetic 26.2 56 0.0012 34.7 3.0 77 591-676 129-205 (248)
30 PF04911 ATP-synt_J: ATP synth 25.8 28 0.0006 29.1 0.5 7 269-275 39-45 (54)
31 PF12263 DUF3611: Protein of u 25.4 4.7E+02 0.01 26.8 9.2 23 478-500 111-133 (183)
32 PF00110 wnt: wnt family; Int 24.6 70 0.0015 34.9 3.4 24 593-616 22-45 (310)
33 PF15176 LRR19-TM: Leucine-ric 24.4 77 0.0017 29.7 3.1 36 401-436 16-58 (102)
34 PF14045 YIEGIA: YIEGIA protei 24.0 1.7E+02 0.0037 31.9 6.0 79 332-438 37-157 (285)
35 KOG0860 Synaptobrevin/VAMP-lik 22.3 1.5E+02 0.0032 28.5 4.6 23 71-93 59-87 (116)
36 PRK01844 hypothetical protein; 22.0 1.4E+02 0.0031 26.3 4.1 39 575-643 10-48 (72)
37 TIGR00966 3a0501s07 protein-ex 21.9 2.2E+02 0.0047 29.8 6.3 70 603-682 170-244 (246)
38 KOG0793 Protein tyrosine phosp 21.1 39 0.00085 40.8 0.7 16 265-280 794-809 (1004)
39 PF06295 DUF1043: Protein of u 20.8 97 0.0021 29.6 3.2 25 408-432 2-26 (128)
40 COG5336 Uncharacterized protei 20.7 1.2E+02 0.0027 28.8 3.7 26 402-427 46-71 (116)
41 PRK08382 putative monovalent c 20.7 3.6E+02 0.0078 28.0 7.4 111 515-631 1-144 (201)
42 COG4214 XylH ABC-type xylose t 20.7 5.5E+02 0.012 29.3 9.2 115 72-193 218-338 (394)
43 smart00097 WNT1 found in Wnt-1 20.4 91 0.002 34.1 3.2 23 593-615 19-41 (305)
44 PRK00523 hypothetical protein; 20.2 1.7E+02 0.0036 26.0 4.1 39 575-643 11-49 (72)
No 1
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=2.5e-218 Score=1809.40 Aligned_cols=681 Identities=88% Similarity=1.346 Sum_probs=624.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCCC-CCCCCCcchhhhhhcCCCchhhcHHHHHHHHHH
Q 005682 3 STLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNS-DKKNGFNDYLIEEEEGINDQSVVAKCADIQSAI 81 (683)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~~l~~a~~~~~~v~~v~i~~~~~~~~~~-~~~ng~~~~~~~~~~g~~~~~~~~~m~~Is~~I 81 (683)
++++||+++..+++++++++++||+++++||+|.+.++++.+++.. +..++++++..++++|++++++++|||||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~eG~~~~~~~~~m~~Ia~~I 80 (765)
T PLN02255 1 MAILSELATEVLIPVAALIGIAFALLQWYLVSRVKVSPDSGASSNGGGGGGGYGDYLIEEEEGLNDHNVVAKCAEIQNAI 80 (765)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccccccccccCccccccCHHHHHHHHHH
Confidence 4689999999999999999999999999999998876655443333 456667777777777777788899999999999
Q ss_pred HHhhhhhhhhhheehhhHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 005682 82 SEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGM 161 (683)
Q Consensus 82 ~eGA~afL~~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM 161 (683)
||||++||+||||++++|++++++++++++.+.++.+++++++.+++.+.|+++....++++++|++|+++|.++||+||
T Consensus 81 ~eGA~afL~rqyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~~aG~iGM 160 (765)
T PLN02255 81 SEGATSFLFTEYKYVGIFMVIFAAVIFVFLGSVEGFSTKSQPCTYDKGKLCKPALANAAFSTVAFLLGALTSVVSGFLGM 160 (765)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999776654333333444555666677888777778899999999999999999999
Q ss_pred hhhhhhhHhhHHHHhhCHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHHH
Q 005682 162 KIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFG 241 (683)
Q Consensus 162 ~vAt~aN~Rta~aA~~g~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALFa 241 (683)
|+|||+|+|||+|||++++++|++|||+|+||||+|++++|++++++|++|..+++++..+.+++++||+||+|++|||+
T Consensus 161 ~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAlFa 240 (765)
T PLN02255 161 KIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYGDDWEGLYEAITGYGLGGSSMALFG 240 (765)
T ss_pred HHHHHHHHHHHHHHHhchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHhhhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998864454444446789999999999999999
Q ss_pred HhhccccchhhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCccc
Q 005682 242 RVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEF 321 (683)
Q Consensus 242 RvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~ 321 (683)
|+||||||||||||||||||||+|||||||||||||||||||||||||||+|||||||++++||+|+++....++.+.++
T Consensus 241 RvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~s~vaamilg~~~~~~~~~~~ 320 (765)
T PLN02255 241 RVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHDF 320 (765)
T ss_pred HHcCceeeeccccchhhhhhhhcCCCCCCCCCcchHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999963212333334
Q ss_pred ccchHhHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccch
Q 005682 322 TSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKN 401 (683)
Q Consensus 322 ~~v~~Plli~a~gil~Siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~ 401 (683)
..+.|||+++++||++|+++++++|.++|.++++|++++||+++|+|++++++.+|++++|++|.++..+..++.+..++
T Consensus 321 ~~v~~PLli~~~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~ 400 (765)
T PLN02255 321 TAMCYPLLISSVGIIVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTVGIAVVSWLALPSSFTIFNFGTQKVVKN 400 (765)
T ss_pred chhhHHHHHHHHHHHHHHHHHHheecccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccccc
Confidence 46999999999999999999999986677777779999999999999999999999999999987544332233234457
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhhccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005682 402 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYG 481 (683)
Q Consensus 402 ~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~GlyG 481 (683)
|++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+||++||+||+||+++|++++++||+++|+||
T Consensus 401 ~~~f~~~~iGl~~g~lI~~iTeYyTs~~y~PV~~IA~aS~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~sy~l~glyG 480 (765)
T PLN02255 401 WQLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSLAAMYG 480 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHHHHHHHHHHh
Q 005682 482 IAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVS 561 (683)
Q Consensus 482 ialAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~eVR~~tD~LDa~GNTTaAi~KGfaIGSAaL~aLaLf~ay~~ 561 (683)
+++|++|||||+++++++|+||||+||||||||||++|||||+|||+||++||||||+|||||||||+|+||+||++|++
T Consensus 481 iaiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay~~ 560 (765)
T PLN02255 481 IAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVS 560 (765)
T ss_pred HHHHHHHHHHHhHHhheeecccCcccCccCHHHHhcCCHHHHHHhhhhcccCCchhhhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhh
Q 005682 562 RAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKE 641 (683)
Q Consensus 562 ~~~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~Alke 641 (683)
+.++..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||||||||||+||||+||||||||+||||
T Consensus 561 ~~~~~~~~l~~P~Vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeG~~kPDY~~cV~I~T~aAlke 640 (765)
T PLN02255 561 RAGISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKE 640 (765)
T ss_pred hcCCCeeecCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhcCCCCCChHHHHHHHHHHHHHh
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHhHHHHHhhhhhhHHHHHhhhhHHHHHHHhhcC
Q 005682 642 MIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQVILEL 683 (683)
Q Consensus 642 Mi~Pgllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi~~ 683 (683)
||.|+++++++|+++|++||+++++|+|+|+++||++||+||
T Consensus 641 Mi~Pgll~v~~Pi~vg~~~G~~al~GlL~G~~vsGv~lAi~m 682 (765)
T PLN02255 641 MIPPGALVMLTPLIVGTLFGVETLSGVLAGALVSGVQIAISA 682 (765)
T ss_pred hhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997
No 2
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=100.00 E-value=3.1e-213 Score=1758.82 Aligned_cols=617 Identities=84% Similarity=1.298 Sum_probs=573.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHHHHhhhhhhh
Q 005682 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (683)
Q Consensus 11 ~~~~~~~~~~~~l~~a~~~~~~v~~v~i~~~~~~~~~~~~~ng~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~ 90 (683)
+.|+++++++++++||+++++||+ |+|+| +|+|||||++|||||++||+
T Consensus 3 ~~~~~~~~~~~gl~~a~~~~~~v~-------------------------~~~~G------~~~M~~Ia~~I~eGA~afL~ 51 (697)
T TIGR01104 3 TEILIPVCAVIGIAYAVLQWVWVS-------------------------RVKLG------TAKMAEIQQAISEGATAFLF 51 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-------------------------cCCCC------cHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999874 67788 99999999999999999999
Q ss_pred hhheehhhHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHh
Q 005682 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (683)
Q Consensus 91 ~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~R 170 (683)
||||++++|++++++++++++.+.+. .+++++++|++|+++|.+|||+|||+|||+|+|
T Consensus 52 rqyk~i~~~~vi~~v~l~~~~~~~~~---------------------~~~~~a~~Fl~Ga~~S~laG~iGM~iat~aNvR 110 (697)
T TIGR01104 52 TEYKYVAVFMVAFAVLIFVFLGSREG---------------------FSDFSTVAFLLGAVTSLLAGYLGMKIATYANAR 110 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc---------------------chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999765432110 012799999999999999999999999999999
Q ss_pred hHHHHhhCHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHHHHhhccccch
Q 005682 171 TTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTK 250 (683)
Q Consensus 171 ta~aA~~g~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTK 250 (683)
||+|||++++++|++|||||+||||+|+||+|+++.++|++|+.+++++..+++++++||+||+|++|||+|+|||||||
T Consensus 111 tA~AA~~~~~~al~vafrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTK 190 (697)
T TIGR01104 111 TTLEARKGVGKALIVAFRSGAVMGFLLAGLGLLVLYITILVFKIYYGDDWEGLFEPITGYGFGASSMALFGRVGGGIYTK 190 (697)
T ss_pred HHHHHHhCHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHhcccCchhhhhhhHHhhhcccHHHHHHHHHHcCceeee
Confidence 99999999999999999999999999999999999999999865444444446789999999999999999999999999
Q ss_pred hhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCcccccchHhHHH
Q 005682 251 AADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLI 330 (683)
Q Consensus 251 AADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~~~v~~Plli 330 (683)
|||||||||||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+....++.+.++..+.|||++
T Consensus 191 AADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADlFESy~~s~iaamvlg~~~~~~~~~~~~~v~~Pl~~ 270 (697)
T TIGR01104 191 AADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDIAGMGADLFESYAESSCAALVLASISSFGLPHDFTAMLYPLAL 270 (697)
T ss_pred ccccchhhhcccccCCCCCCCCCchhHHHhcCCcccchhcccchHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999963212222233458999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHH
Q 005682 331 SSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAV 410 (683)
Q Consensus 331 ~a~gil~Siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~ 410 (683)
+++||++|++|++++| .++++|++++||+++|+|++++++.+|++++|++|.++..+..++....++|++|+|+++
T Consensus 271 ~~~gi~~Siig~~~v~----~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~ 346 (697)
T TIGR01104 271 SSVGILVCLLTTLFVK----IKPVKEIEPALKKQLIISTVLMTVGVAVISWVALPTGFTIFNFGTQKEVSNWQLFLCVAV 346 (697)
T ss_pred HHHHHHHHHHHheEEe----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHH
Confidence 9999999999999973 456668999999999999999999999999999987544322222234557899999999
Q ss_pred HHHHHHHHHHHhhhhccCCCchhHHHHhhhccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005682 411 GLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGML 490 (683)
Q Consensus 411 Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~GlyGialAa~GML 490 (683)
|+++|++|+++||||||++||||||||++|+||||||||+||++||+||+||+++|++++++||+++|+||+|+|++|||
T Consensus 347 Gl~~g~lI~~iTeYyTs~~y~PV~~IA~as~tG~AtnII~Gla~Gm~St~~pvl~I~~~i~~sy~~~GlyGiaiAa~GML 426 (697)
T TIGR01104 347 GLWAGLLIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAASIIVSFSFAGMYGIAMAALGML 426 (697)
T ss_pred HHHHHHHHHHhheeecCCCCCcHHHHHHHhCcCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHHHHHHHHHHhhhccceeec
Q 005682 491 STIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGITTVDV 570 (683)
Q Consensus 491 st~~i~la~DayGPIaDNAgGIaEMs~l~~eVR~~tD~LDa~GNTTaAi~KGfaIGSAaL~aLaLf~ay~~~~~~~~~~l 570 (683)
||+++++++|+||||+||||||||||++|||||++||+||++||||||++||||||||+|+||+||++|++++++..+|+
T Consensus 427 st~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~TD~LDavGNTT~Ai~KGfAIGSAaL~alaLF~ay~~~~~~~~~~l 506 (697)
T TIGR01104 427 STAGTGLAIDAYGPISDNAGGIAEMAGLPHRVRERTDALDAVGNTTAAIGKGFAIGSAALVALALFGAFVSRAVITTVDV 506 (697)
T ss_pred HHhhheeeeecccCcccCcccHHHHhcCCHHHHHhhhhccccCCcchhhccceehhhHHHHHHHHHHHHHHHhccCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred CChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHH
Q 005682 571 LTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVM 650 (683)
Q Consensus 571 ~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi~Pgllai 650 (683)
.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||++||||+||||||||+||||||+|+++++
T Consensus 507 ~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~aAlkeMi~Pgll~i 586 (697)
T TIGR01104 507 LTPKVFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGLLVM 586 (697)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHHHHHHhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhhhhHHHHHhhhhHHHHHHHhhcC
Q 005682 651 LTPLIVGIFFGVETLSGVLAGSLVSGVQVILEL 683 (683)
Q Consensus 651 l~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi~~ 683 (683)
++|+++|++||+++++|+|+|+++||++||++|
T Consensus 587 ~~Pi~vG~~~G~~al~GlL~G~~vsG~~lAi~m 619 (697)
T TIGR01104 587 LTPLIVGFLFGVETLSGVLAGVLVSGVQIAISA 619 (697)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997
No 3
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=6.3e-209 Score=1733.18 Aligned_cols=619 Identities=39% Similarity=0.628 Sum_probs=557.6
Q ss_pred HHHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHHHHhhhhhhhhhheehh
Q 005682 18 CAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVG 97 (683)
Q Consensus 18 ~~~~~l~~a~~~~~~v~~v~i~~~~~~~~~~~~~ng~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~~qyk~i~ 97 (683)
+++++|+||+++++||+ |||+| +|||||||++|||||++||+||||+++
T Consensus 2 ~~~l~l~~a~~~~~~v~-------------------------~~~~G------~~~M~~Ia~~I~eGA~afL~~qyk~i~ 50 (730)
T PLN02277 2 VCIISLLFSLYLTKWVL-------------------------AKDEG------PPEMVEISDAIRDGAEGFFRTQYGTIS 50 (730)
T ss_pred hHHHHHHHHHHHHHHHH-------------------------cCCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999873 67788 999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhh
Q 005682 98 VFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARK 177 (683)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~ 177 (683)
+|++++++++++++.+. ..++ +|+ ....+....++++++||++|+++|.+|||+|||+|||+|+|||+|||+
T Consensus 51 ~~~vv~~~~l~~~~~~~-~~~~-~~~------~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aNvRtA~AA~~ 122 (730)
T PLN02277 51 KMAVVLAFVILGIYLFR-SLTP-QQE------AAGLGRATSAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSSAARR 122 (730)
T ss_pred HHHHHHHHHHHHHHhcc-cccc-ccc------cccccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 99999999987654431 1111 110 111122234678999999999999999999999999999999999999
Q ss_pred CHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCC------CchhhHHHHhhhcchhhHHHHHHHhhccccchh
Q 005682 178 SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD------DWEGLFEAITGYGLGGSSMALFGRVGGGIYTKA 251 (683)
Q Consensus 178 g~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~------~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKA 251 (683)
+++++|++|||||+||||+|+||+|+++.++|++|..++.. +..+.+++++||+||+|++|||+|+||||||||
T Consensus 123 ~~~~al~vAfrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKA 202 (730)
T PLN02277 123 SAREALQIAVRAGGFSALVVVGMTVLGVAILYATFYVWLGVDSPGGMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKA 202 (730)
T ss_pred CHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHhhhccHHHHHHHHHHcCceeeec
Confidence 99999999999999999999999999999999888644321 122356799999999999999999999999999
Q ss_pred hhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhc--CCCcccccchHhHH
Q 005682 252 ADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF--GINHEFTSMLYPLL 329 (683)
Q Consensus 252 ADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~--~~~~~~~~v~~Pll 329 (683)
||||||||||||+|||||||||||||||||||||||||||||||||||++++|++|+|+..... +.......++|||+
T Consensus 203 ADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGDvAGmgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~v~~Pl~ 282 (730)
T PLN02277 203 ADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAKRCKIEDPSGFILFPLV 282 (730)
T ss_pred cccchhhhhhhhcCCCCCCCCCchHHHHHhCCcccccccccchhHHHHHHHHHHHHHHHHHHhhccCcccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999964310 11111245899999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccc---ccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHH
Q 005682 330 ISSIGILVCLITTLFATDIFEVKA---VKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFL 406 (683)
Q Consensus 330 i~a~gil~Siig~~~~~~~~~~~~---~~~~~~aL~~g~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~ 406 (683)
++++||++|++|++++|...++++ ++||+++||+|+|+|++++++.+|++++|++.+. ..+..||++|+
T Consensus 283 i~~~gii~Siig~~~vr~~~~~~~~~~~~~p~~aL~~g~~vs~~l~~v~~~~~~~~~l~~~--------~~~~~~~~~f~ 354 (730)
T PLN02277 283 VHSFDLVVSSIGILSIKGTRDSSVKSPVEDPMAVLQKGYSVTIILAVVTFGASTRWLLYTE--------QAPSAWFNFAL 354 (730)
T ss_pred HHHHHHHHHHHHHheEeccCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cccchHHHHHH
Confidence 999999999999999852111001 2478999999999999999999999999876320 11113689999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhhccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH---------
Q 005682 407 CVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA--------- 477 (683)
Q Consensus 407 ~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~--------- 477 (683)
|+++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||+||+++|++++++||+++
T Consensus 355 ~~~~Gl~~g~lI~~iTeYYTs~~y~PV~~IA~aS~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~ 434 (730)
T PLN02277 355 CGLVGIITAYAFVWISQYYTDYKYEPVRTLALASTTGHGTNIIAGVSLGLESTALPVLVISVAIISAYWLGNTSGLVDEN 434 (730)
T ss_pred HHHHHHHHHHHHHHeeeeeCCCCCCcHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----HHHHHHHHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHH
Q 005682 478 -----AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVS 552 (683)
Q Consensus 478 -----GlyGialAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~eVR~~tD~LDa~GNTTaAi~KGfaIGSAaL~a 552 (683)
|+||+++|++|||||++++|++|+||||+||||||+||++||||||||||+||++||||||++||||||||+|++
T Consensus 435 ~~~~~GlyGialAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDavGNTTaAi~KGfAIGSAaL~a 514 (730)
T PLN02277 435 GNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALAS 514 (730)
T ss_pred ccccccHHHHHHHHHHHHhhcceeEEeecccCcccCcccHHHHccCCchhhhhccccccccCcchhhcccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc------cceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 005682 553 LALFGAFVSRAG------ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPD 626 (683)
Q Consensus 553 LaLf~ay~~~~~------~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPD 626 (683)
|+||++|+++++ ++.+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||||||||||+|||
T Consensus 515 laLF~ay~~~~~~~~~~~~~~~~l~~p~Vl~GlliG~mlpflFsal~m~AVg~aA~~mVeEVRRQFreipGi~eG~~kPd 594 (730)
T PLN02277 515 FLLFSAYMDEVSAFAGVPFKEVDIAIPEVFVGGLLGSMLIFLFSAWACAAVGRTAQEVVNEVRRQFAERPGIMDYKEKPD 594 (730)
T ss_pred HHHHHHHHHHhhhhhccccceeeCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCC
Confidence 999999998763 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhh------------hhhHHHHHhhhhHHHHHHHhhcC
Q 005682 627 YATCVKISTDASIKEMIPPGALVMLTPLIVGIFF------------GVETLSGVLAGSLVSGVQVILEL 683 (683)
Q Consensus 627 Y~~cV~IsT~~AlkeMi~Pgllail~Pi~vG~~~------------G~~al~GlL~G~~~sG~~lAi~~ 683 (683)
|+||||||||+||||||+||+|++++|+++|++| |+++++|+|+|+++||++||++|
T Consensus 595 Y~~cV~I~T~aAlreMi~Pgllail~Pi~vg~~~~~~G~~~~~~~~g~~al~GlL~G~~vsGv~lAi~m 663 (730)
T PLN02277 595 YGRCVAIVASAALREMIKPGALAVISPIVVGLVFRILGYATGQPLLGAKVVAGMLMFATVSGILMALFL 663 (730)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 67999999999999999999997
No 4
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=100.00 E-value=1.6e-207 Score=1725.21 Aligned_cols=606 Identities=52% Similarity=0.863 Sum_probs=544.9
Q ss_pred HHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHHHHhhhhhhhhhheehhh
Q 005682 19 AVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGV 98 (683)
Q Consensus 19 ~~~~l~~a~~~~~~v~~v~i~~~~~~~~~~~~~ng~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~~qyk~i~~ 98 (683)
++++++||+++++||+ |+|+| +++||||+++|||||++||+||||++++
T Consensus 1 ~~~~l~~a~~~~~~v~-------------------------~~~~G------~~~m~~Ia~~I~eGA~aFL~reYk~i~~ 49 (682)
T PF03030_consen 1 AVLGLIFALFLARWVL-------------------------KQDEG------NEKMQEIAAAIQEGAMAFLKREYKTIAI 49 (682)
T ss_dssp -HHHHHHHHHHHHHHH-------------------------TS----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHh-------------------------cCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999874 67788 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHH-hh
Q 005682 99 FMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEA-RK 177 (683)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA-~~ 177 (683)
|+++++++|++.+....+ .++++++||++|+++|.+|||+||++|||+|+||+++| ++
T Consensus 50 ~~vi~~~ll~~~~~~~~~---------------------~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~AAr~~ 108 (682)
T PF03030_consen 50 FIVIVAILLFFLLGFLGG---------------------QGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANAARTR 108 (682)
T ss_dssp HHHHHHHHHHHHHHCCCT---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHHHHHHHHHhhccc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHhcC
Confidence 999999999887643111 36899999999999999999999999999999999999 59
Q ss_pred CHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcC-CCchhhHHHHhhhcchhhHHHHHHHhhccccchhhhhcc
Q 005682 178 SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYG-DDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGA 256 (683)
Q Consensus 178 g~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~-~~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKAADVGA 256 (683)
++++||++|||+|+||||+|+|++|++++++|++++..++ .+.++.+++++||+||+|++|||+|+|||||||||||||
T Consensus 109 gl~~AL~vAfrgGaVmGl~vvglgLlgl~~l~~i~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGA 188 (682)
T PF03030_consen 109 GLNKALQVAFRGGAVMGLSVVGLGLLGLSILFLIFSAFFGKTNPENAPEALSGFGFGASSIALFARVGGGIYTKAADVGA 188 (682)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHhhcchHHHHHHHHHHcCceehhHHHHhh
Confidence 9999999999999999999999999999999999876544 345668899999999999999999999999999999999
Q ss_pred cccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCcccccchHhHHHHHHHHH
Q 005682 257 DLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGIL 336 (683)
Q Consensus 257 DLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~~~v~~Plli~a~gil 336 (683)
|||||||+||||||||||+||||||||||||||||+|||||||+++++++|+|+.........+...+.|||+++++||+
T Consensus 189 DLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~sivaamilg~~~~~~~~~~~~~v~~Pl~i~~~gii 268 (682)
T PF03030_consen 189 DLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVVSIVAAMILGSTLFGTNGFNFSGVLFPLLIAAVGII 268 (682)
T ss_dssp HHHHHTTS---TT-TT-TTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTT-HHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcccchHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986432111223379999999999999
Q ss_pred HHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHH
Q 005682 337 VCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416 (683)
Q Consensus 337 ~Siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~ 416 (683)
+|++|++++|.. +.++.+||+|+||+|+|++++++++++|++++|++..+. ......||++|+|+++|+++|+
T Consensus 269 ~Siig~~~v~~~-~~~~~~~~~~aL~~g~~vs~~l~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~iGl~~g~ 341 (682)
T PF03030_consen 269 ASIIGIFFVRTK-KGATSKDPMKALRRGYIVSSILSIILFFFLTYWLLGFSF------FGSGISWWGLFGCVLIGLVAGV 341 (682)
T ss_dssp HHHHHHHHHHTT----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSEETT------EEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHheeEEEec-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCcchHHHHHHHHHHHHHHH
Confidence 999999998642 333456999999999999999999999999999882211 1234568999999999999999
Q ss_pred HHHHHhhhhccCCCchhHHHHhhhccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Q 005682 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA-----AMYGIAVAALGMLS 491 (683)
Q Consensus 417 lI~~~TeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~-----GlyGialAa~GMLs 491 (683)
+|+++|||||||+||||||||++|+||||||||+|+++||+||++|+++|++++++||+++ |+||+|+|++||||
T Consensus 342 lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~i~~~i~~sy~l~~~~~~GlyGiaiAa~GMLs 421 (682)
T PF03030_consen 342 LIGFITEYYTSYSYRPVREIAEASETGPATNIISGLAVGMESTAIPVLVIAAAILISYYLGGGSGPGLYGIAIAAVGMLS 421 (682)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCchHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHHHHHHHHHHhhh------cc
Q 005682 492 TIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRA------GI 565 (683)
Q Consensus 492 t~~i~la~DayGPIaDNAgGIaEMs~l~~eVR~~tD~LDa~GNTTaAi~KGfaIGSAaL~aLaLf~ay~~~~------~~ 565 (683)
|++++|++|+||||+|||||||||+++|||||||||+|||+||||||+|||||||||+|+||+||++|++++ ..
T Consensus 422 t~g~~la~DayGPiaDNAgGIaEMs~l~~~VR~~td~LDa~GNTT~A~~KGfaIgSAaLaal~Lf~a~~~~~~~~~~~~~ 501 (682)
T PF03030_consen 422 TAGIVLAMDAYGPIADNAGGIAEMSGLPEEVREITDALDAVGNTTKAIGKGFAIGSAALAALALFAAYVQEVSLFNGTSI 501 (682)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-
T ss_pred HhHHHHHhhccCcccccccchHHHcCCChhhhhhhHHHhhcCchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 56
Q ss_pred ceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhch
Q 005682 566 TTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPP 645 (683)
Q Consensus 566 ~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi~P 645 (683)
..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||+|||||||+||||+|||||+||+||||||.|
T Consensus 502 ~~~~l~~p~vl~G~liG~~lpflfsa~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alkemi~P 581 (682)
T PF03030_consen 502 QSVDLTNPYVLIGLLIGAMLPFLFSALTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKEMILP 581 (682)
T ss_dssp S--BTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHHTHHH
T ss_pred ccCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhHHHHHhhhhhhHHHHHhhhhHHHHHHHhhcC
Q 005682 646 GALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQVILEL 683 (683)
Q Consensus 646 gllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi~~ 683 (683)
+++++++|+++|++||+++++|+|+|+++||++||++|
T Consensus 582 ~ll~v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m 619 (682)
T PF03030_consen 582 GLLAVLAPIVVGFLLGPEALGGLLMGATVSGILLAIFM 619 (682)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987
No 5
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=100.00 E-value=2e-203 Score=1679.33 Aligned_cols=582 Identities=49% Similarity=0.814 Sum_probs=548.1
Q ss_pred hhhhcCCCchhhcHHHHHHHHHHHHhhhhhhhhhheehhhHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhh
Q 005682 59 IEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALAT 138 (683)
Q Consensus 59 ~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (683)
+|||+| +|+||||+++|||||++||+||||++++|+++++++++++... +..
T Consensus 2 ~~~~~G------~~~m~~Ia~~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~~----------------------~~~ 53 (666)
T PRK00733 2 LKQPAG------TERMQEIAGAIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAGG----------------------LFL 53 (666)
T ss_pred CCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------HHH
Confidence 478889 9999999999999999999999999999999999998654110 113
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhhCHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 005682 139 AAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD 218 (683)
Q Consensus 139 ~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~g~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~ 218 (683)
++++++||++|+++|.++||+|||+|||+|+|||++||++++++|++|||+|+||||+|+|++|+++.++|++|....
T Consensus 54 ~~~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~~~~al~vafr~G~vmGl~vvgl~Llgl~~~~~~~~~~~-- 131 (666)
T PRK00733 54 GWLTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGLYLVFGLGA-- 131 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 579999999999999999999999999999999999999999999999999999999999999999999998876322
Q ss_pred CchhhHHHHhhhcchhhHHHHHHHhhccccchhhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhh
Q 005682 219 DWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGS 298 (683)
Q Consensus 219 ~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFES 298 (683)
+..+.+++++||+||+|++|||+|+||||||||||||||||||||+|||||||||||||||||||||||||||+||||||
T Consensus 132 ~~~~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlfES 211 (666)
T PRK00733 132 NPDDAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMGADLFES 211 (666)
T ss_pred cchhhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCCCCCCCcchHHHhhcccchhhccccchHHHH
Confidence 22346789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCcccccchHhHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHH
Q 005682 299 YAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAI 378 (683)
Q Consensus 299 y~~si~aamil~~~~~~~~~~~~~~v~~Plli~a~gil~Siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~~l~~i~~~~ 378 (683)
|+++++++|+++.... ....++..++|||+++++|+++|++|++++ |.++++||+|+||+|+|+|++++++++|+
T Consensus 212 y~~sivaamilg~~~~-~~~~~~~~v~~Pl~i~~~gii~Siig~~~v----~~~~~~~~~~aL~~g~~~s~~l~~v~~~~ 286 (666)
T PRK00733 212 YAVTIVAAMVLGAAAA-DAAFGVAGVLFPLLIAAVGIIASIIGIFFV----RLGKGGNPMKALNRGLIVTAVLSIVLTYF 286 (666)
T ss_pred HHHHHHHHHHHhhhcc-ccccchhHHHHHHHHHHHHHHHHHHHHeeE----EeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997321 122345679999999999999999999996 45667899999999999999999999999
Q ss_pred HHHhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhhccCCchhHHhhhhhhhhh
Q 005682 379 VSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKS 458 (683)
Q Consensus 379 ~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~Gm~S 458 (683)
+++|++|... ...+||++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+|+++||+|
T Consensus 287 ~~~~~l~~~~--------~~~~~~~~f~~~~iGlv~g~li~~iTeYyTs~~~~PVr~IA~as~tG~aTnIi~Gla~Gm~S 358 (666)
T PRK00733 287 ATYWLLGDGA--------DGFTWLNLFGAVLIGLVVGALIGLITEYYTSTEYRPVKEIAEASRTGPATNIISGLAVGMES 358 (666)
T ss_pred HHHHHhcccc--------cccccHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 9999997531 12457899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCc
Q 005682 459 VIIPIFAIAVSIFVSFSF----AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGN 534 (683)
Q Consensus 459 t~~Pvl~I~~ai~~sy~l----~GlyGialAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~eVR~~tD~LDa~GN 534 (683)
|++|+++|++++++||++ +|+||+++|++|||||+++++++|+||||+||||||+||+++|||||+|||+||++||
T Consensus 359 t~~pvl~i~~ai~~sy~l~~~~~GlyGia~Aa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGN 438 (666)
T PRK00733 359 TALPVLVIVAAILGAYLLGMAGAGLYGIALAAVGMLSTAGIIVAVDAYGPITDNAGGIAEMAGLPPEVRKITDALDAVGN 438 (666)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHhhheeeccccCccchHHHcCCChhHhhhChHhHhccc
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHhhh-------ccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHH
Q 005682 535 TTAAIGKGFAIGSAALVSLALFGAFVSRA-------GITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEE 607 (683)
Q Consensus 535 TTaAi~KGfaIGSAaL~aLaLf~ay~~~~-------~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~E 607 (683)
||||++||||||||+|+||+||++|++++ +...+|+.||+|++|+|+|+|+|||||+++|+||||+|++||||
T Consensus 439 TT~A~~KGfaIGSAaLaal~Lf~ay~~~~~~~~~~~~~~~~~l~~p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~E 518 (666)
T PRK00733 439 TTKAVTKGFAIGSAALAALALFAAYIDELAGLLGGGGILSLDLSNPYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEE 518 (666)
T ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 56679999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhhhhhHHHHHhhhhHHHHHHHhhcC
Q 005682 608 VRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQVILEL 683 (683)
Q Consensus 608 VRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi~Pgllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi~~ 683 (683)
||||||||||||||++||||+||||||||+||||||.|+++++++|+++|++||+++++|+|+|+++||++||++|
T Consensus 519 VRrQFre~pGi~eg~~kPdY~~cV~I~T~~AlkeMi~P~ll~v~~Pi~vG~~lG~~al~G~L~G~~vsG~~lAi~m 594 (666)
T PRK00733 519 VRRQFREIPGIMEGTAKPDYARCVDISTKAALKEMILPGLLAVLAPIAVGFLLGPEALGGLLAGAIVTGLLLAIFM 594 (666)
T ss_pred HHHHHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987
No 6
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=3.3e-201 Score=1602.50 Aligned_cols=609 Identities=45% Similarity=0.740 Sum_probs=567.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHHHHhhhhhhh
Q 005682 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (683)
Q Consensus 11 ~~~~~~~~~~~~l~~a~~~~~~v~~v~i~~~~~~~~~~~~~ng~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~ 90 (683)
..++.++|++++++||.|.++|| +++|+| |||||||+.+|||||++||+
T Consensus 5 ~~~l~i~~gl~sv~~A~~~~~sV-------------------------l~~~~G------n~rm~eIa~aIreGA~ayL~ 53 (703)
T COG3808 5 VLYLAIACGLLSVLYAAWAAKSV-------------------------LRADAG------NERMKEIAAAIREGAMAYLA 53 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------------HhccCC------cHHHHHHHHHHHHhHHHHHH
Confidence 45778899999999999999976 478899 99999999999999999999
Q ss_pred hhheehhhHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHh
Q 005682 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (683)
Q Consensus 91 ~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~R 170 (683)
||||+|+++.+++++++.+++. .|.++++|++|++.|..+||+||+++||+|+|
T Consensus 54 rqy~tiavv~ivva~ll~~~l~--------------------------~~~ta~~Fl~GAv~S~~AG~~GM~vstrAN~R 107 (703)
T COG3808 54 RQYKTIAVVGIVVAILLAWFLL--------------------------SWLTAIGFLLGAVLSAAAGFAGMHVSTRANVR 107 (703)
T ss_pred hhhhHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHhhhcccceeeeehhhhH
Confidence 9999999999999988877642 36899999999999999999999999999999
Q ss_pred hHHHHhhCHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcC--CCchhhHHHHhhhcchhhHHHHHHHhhcccc
Q 005682 171 TTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYG--DDWEGLFEAITGYGLGGSSMALFGRVGGGIY 248 (683)
Q Consensus 171 ta~aA~~g~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~--~~~~~~~~~i~gf~~GaS~iALFaRvGGGIy 248 (683)
|||||++++.++|++||++|+|||++|+|++||++++.|+++....+ ++.+.....+.||+||||++++|+|+|||||
T Consensus 108 tAqAAs~~l~~al~vaf~sGaV~Gl~VaGlaLlg~s~~ylv~~~~~g~~~~~~~~i~~lv~~gfGaSlIslFaRvGGGIf 187 (703)
T COG3808 108 TAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYYLVLTSVLGHEPNLRIVIDSLVGLGFGASLISLFARVGGGIF 187 (703)
T ss_pred HHHHHHhhhhhhhhhhcccCcchhhHHHHHHHHHHHhhhheeecccCCCcccchhhhhhhhhccchHHHHHHHHhcCcee
Confidence 99999999999999999999999999999999999999988765333 2234456789999999999999999999999
Q ss_pred chhhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCcccccchHhH
Q 005682 249 TKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPL 328 (683)
Q Consensus 249 TKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~~~v~~Pl 328 (683)
||+||||+|||||||+||||||||||+||||||||||||||||+|||||||+++++++|+|++....+.+.-...++|||
T Consensus 188 TKaADvgaDLVGKVEagIPEDDPRNpatIADNVGDNVGD~AGM~ADLfEsYvvtvvAtm~Laai~f~~~~~~~~~ilyPl 267 (703)
T COG3808 188 TKAADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFESYVVTVVATMVLAAIFFLGTETIEAVILYPL 267 (703)
T ss_pred cchhhcccccccccccCCCCCCCCCccccccccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976433222223588999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHH
Q 005682 329 LISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCV 408 (683)
Q Consensus 329 li~a~gil~Siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~ 408 (683)
.+.+++|++|++|+||+ |.+++++++.+|++++|.+.+++++.+++.++.++..+. .+ -.+..+..+++|+|.
T Consensus 268 ~i~a~~i~~Si~gtffV----k~~~~~~i~~al~~gl~~t~~Lsvv~~~~~t~~l~g~~~--~~-v~g~~~~~~~lf~~~ 340 (703)
T COG3808 268 AICAVGIITSIIGTFFV----KLGKSGSIMGALYKGLIATGILSVVALAFVTSFLLGGTI--GT-VAGMSIGAINLFFCG 340 (703)
T ss_pred HHHHHHHHHHHHhheEE----EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cc-cccccccchhhHHHH
Confidence 99999999999999996 577899999999999999999999999999998874221 00 012334567899999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCchhHHHHhhhccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005682 409 AVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALG 488 (683)
Q Consensus 409 ~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~GlyGialAa~G 488 (683)
++|++++.+|+++||||||++|||||+|||+|.|||+||||+|+++|||||++|.++|.++|+.+|+++|+||+++|++|
T Consensus 341 ~~Glv~~~lIv~iTeyYT~t~~rPv~~ia~as~tG~~tnii~GlavgleSt~~P~iviv~gIi~~~~~~GLyG~AIAa~~ 420 (703)
T COG3808 341 VIGLVVTALIVVITEYYTSTNYRPVNSIAQASVTGHGTNIIQGLAVGLESTALPAIVIVIGIIITYQLAGLYGTAIAAVG 420 (703)
T ss_pred HHHHHHHHHheeeeeeeccCCcchHHHHHHhhccCcchhhhhhhhhhhhhccccHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHHHHHHHHHHhhhc----
Q 005682 489 MLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAG---- 564 (683)
Q Consensus 489 MLst~~i~la~DayGPIaDNAgGIaEMs~l~~eVR~~tD~LDa~GNTTaAi~KGfaIGSAaL~aLaLf~ay~~~~~---- 564 (683)
||++++++++.|+|||++||||||+||++||||||++||+||++||||||+|||||||||+|+||+||++|..++.
T Consensus 421 ML~~agmiva~DayGPVtDNAGGIaEMa~LppEVR~~TD~LDAVGNTTkAvtKGyAIGSA~l~AL~LFAaY~~~~~~~a~ 500 (703)
T COG3808 421 MLSTAGMIVALDAYGPVTDNAGGIAEMAGLPPEVRKITDALDAVGNTTKAVTKGYAIGSAALGALVLFAAYSFDLKYFAA 500 (703)
T ss_pred HHHHhheEEEeeccCCcccCccchHHHcCCCHHHHHhhHHHHhccchhhhhhcccchhHHHHHHHHHHHHHHHHhhhHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ------------cceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHH
Q 005682 565 ------------ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVK 632 (683)
Q Consensus 565 ------------~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~ 632 (683)
...+|+.||+|++|+++|+++||+||+++|.||||+|++|||||||||||+|||||||+||||+||||
T Consensus 501 ~g~~~~~~~~~~~~~~dl~np~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY~R~Vd 580 (703)
T COG3808 501 NGKPYPYFADMGALSLDLSNPYVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDYGRCVD 580 (703)
T ss_pred cCCCCcccccccceeeecCChHHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCchhHHHH
Confidence 12499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhchhhHHHHhHHHHHhhhhhhHHHHHhhhhHHHHHHHhhcC
Q 005682 633 ISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQVILEL 683 (683)
Q Consensus 633 IsT~~AlkeMi~Pgllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi~~ 683 (683)
|+||+|||||+.|++++|++|+++|+++|+++|||+|+|.+++|+++||+|
T Consensus 581 i~T~aAl~eMi~P~llavl~Plvvgli~G~~aLgg~L~G~iv~G~~~Ai~m 631 (703)
T COG3808 581 ILTKAALKEMIIPGLLAVLAPLVVGLILGFAALGGLLLGVIVNGLFVAISM 631 (703)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHhh
Confidence 999999999999999999999999999999999999999999999999987
No 7
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=79.28 E-value=29 Score=41.84 Aligned_cols=69 Identities=26% Similarity=0.328 Sum_probs=47.2
Q ss_pred cCChhHHHHHHhhhhHHHHHHhHhHHHHHHH---HHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHH-HHhhhhch
Q 005682 570 VLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA---ALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDA-SIKEMIPP 645 (683)
Q Consensus 570 l~~p~Vl~GlliG~~lpflFsal~m~aVg~a---A~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~-AlkeMi~P 645 (683)
+..|+.+.|+|+|+.+-=++-++.|.-.|-| |.|.||+- -..||..|-|+.+|-==|-. =+|..--|
T Consensus 595 ~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAKKyIE~g---------~~ggKgS~aHkAaVvGDTVGDP~KDTaGP 665 (682)
T PF03030_consen 595 LLGPEALGGLLMGATVSGILLAIFMANAGGAWDNAKKYIEQG---------NLGGKGSEAHKAAVVGDTVGDPFKDTAGP 665 (682)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------SHHTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhcc---------CcCCCCChhhCCcccCCCCCCCccccCcc
Confidence 4678889999999999999999999888854 56667642 34468888888877544433 24555555
Q ss_pred hh
Q 005682 646 GA 647 (683)
Q Consensus 646 gl 647 (683)
.+
T Consensus 666 sl 667 (682)
T PF03030_consen 666 SL 667 (682)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 8
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=77.79 E-value=56 Score=38.13 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=42.1
Q ss_pred ccccchhhhhcccccchhhcCCCCCCCCC-cchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCccccc
Q 005682 245 GGIYTKAADVGADLVGKVERNIPEDDPRN-PAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTS 323 (683)
Q Consensus 245 GGIyTKAADVGADLVGKVEagIPEDDPRN-PavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~~~ 323 (683)
|++=++..-+..||- ||||||- ++==-=-.|+|+ +++.+.++.+.... +..
T Consensus 132 Gl~K~NiS~llg~ly-------~~~DprrD~gFt~fY~~iNi---------------Gsl~~p~i~~~~~~------~~g 183 (498)
T COG3104 132 GLFKPNISSLLGELY-------PKDDPRRDGGFTLFYMGINI---------------GSLIAPIITGLLAI------NYG 183 (498)
T ss_pred ccccccHHHHHHHhc-------CCCCcccCCCccEEEEEeeh---------------HHHHHHHHHHHHHH------hhC
Confidence 556667777777774 9999992 111111234553 34455555544321 111
Q ss_pred chHhHHHHHHHHHHHHHHHhhhhhhh
Q 005682 324 MLYPLLISSIGILVCLITTLFATDIF 349 (683)
Q Consensus 324 v~~Plli~a~gil~Siig~~~~~~~~ 349 (683)
-..-+-++++|+..+++-..+.|+.+
T Consensus 184 ~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchh
Confidence 22334667788877777766666544
No 9
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=55.04 E-value=31 Score=36.24 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhcccc--ccccCCcchhhccCCchHHHH
Q 005682 458 SVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYG--PISDNAGGIAEMAGMSHRIRE 524 (683)
Q Consensus 458 St~~Pvl~I~~ai~~sy~l~GlyGialAa~GMLst~~i~la~DayG--PIaDNAgGIaEMs~l~~eVR~ 524 (683)
.|++|+.++++.+- ++| +...+..++.=.|+ ||.-| -.+-+.+.||+++|
T Consensus 71 qTiPslAllallip-------~~G--------iG~~PAiiAL~lYsLLPIvrN--T~~GL~~V~~~v~E 122 (221)
T COG1174 71 QTIPSLALLALLIP-------VLG--------IGLTPAIIALFLYSLLPIVRN--TYTGLASVPPSVIE 122 (221)
T ss_pred hhchHHHHHHHHHH-------Hhc--------CCccHHHHHHHHHHHhHHHHH--HHHHHhcCCHHHHH
Confidence 36667666655543 222 44455555555554 77666 34556677888877
No 10
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=51.81 E-value=1.3e+02 Score=37.33 Aligned_cols=92 Identities=21% Similarity=0.324 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhh
Q 005682 457 KSVIIPIFAIAVSIFVSFSFAAMYGIA------VAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALD 530 (683)
Q Consensus 457 ~St~~Pvl~I~~ai~~sy~l~GlyGia------lAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~eVR~~tD~LD 530 (683)
..+++|++.+.+++..++.+.+++|.. ..+..++..+.+.+++| + +|-=++..-||.|+--|+-|
T Consensus 198 ~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vD-------y--~I~lv~r~~ee~~~g~~~~~ 268 (910)
T TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTD-------Y--AVFLTGRYHEERRKGESLEE 268 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH-------H--HHHHHHHHHHHHHcCCCHHH
Confidence 345677777777777776665555542 22333333444555555 2 33333444455555556667
Q ss_pred ccCcccccccchhhHHHHHHHHHHHHHHH
Q 005682 531 AAGNTTAAIGKGFAIGSAALVSLALFGAF 559 (683)
Q Consensus 531 a~GNTTaAi~KGfaIGSAaL~aLaLf~ay 559 (683)
|+-.+.+-+++ +|-.++++..+=|.++
T Consensus 269 Av~~a~~~~g~--~I~~s~lT~~~gf~~l 295 (910)
T TIGR00833 269 AAAEALRGTGK--AILGSALTVAVAFLAL 295 (910)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 77777766665 3444555544444443
No 11
>PRK11677 hypothetical protein; Provisional
Probab=49.86 E-value=21 Score=34.71 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCchhHHHH
Q 005682 405 FLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVA 437 (683)
Q Consensus 405 f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA 437 (683)
|..+++|+++|++||++.-.||+.+.+--+++-
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le 35 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQ 35 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence 456789999999999999999987765544443
No 12
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=47.72 E-value=2.3e+02 Score=30.60 Aligned_cols=100 Identities=23% Similarity=0.441 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccc--CchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHH
Q 005682 330 ISSIGILVCLITTLFATDIFEVKAVK--EIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLC 407 (683)
Q Consensus 330 i~a~gil~Siig~~~~~~~~~~~~~~--~~~~aL~~g~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~ 407 (683)
+...+++.-++|..+... +.++++ +-.+..++++.. .+++.++..+ |..+|+.++ .+.|..+.-
T Consensus 105 ~G~~Al~liiiGv~lts~--~~~~~~~~~~~~~~~kgi~~-Ll~stigy~~--Y~~~~~~~~---------~~~~~~~lP 170 (269)
T PF06800_consen 105 IGFLALVLIIIGVILTSY--QDKKSDKSSSKSNMKKGILA-LLISTIGYWI--YSVIPKAFH---------VSGWSAFLP 170 (269)
T ss_pred HHHHHHHHHHHHHHHhcc--ccccccccccccchhhHHHH-HHHHHHHHHH--HHHHHHhcC---------CChhHhHHH
Confidence 444456666777766432 222222 224567777774 6666665433 444454322 346888888
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCchhHHHHhhhccCCchhHHhhhhhh
Q 005682 408 VAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALG 455 (683)
Q Consensus 408 ~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~G 455 (683)
=.+|++.+.++-..-+ ++|.++ +. +.-|++.|+-.+
T Consensus 171 qaiGm~i~a~i~~~~~------~~~~~~--k~----~~~nil~G~~w~ 206 (269)
T PF06800_consen 171 QAIGMLIGAFIFNLFS------KKPFFE--KK----SWKNILTGLIWG 206 (269)
T ss_pred HHHHHHHHHHHHhhcc------cccccc--cc----hHHhhHHHHHHH
Confidence 8899887655533322 233332 11 357899998654
No 13
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=44.94 E-value=2.4e+02 Score=33.60 Aligned_cols=132 Identities=23% Similarity=0.282 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccCch------------HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccc
Q 005682 329 LISSIGILVCLITTLFATDIFEVKAVKEIE------------PSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQ 396 (683)
Q Consensus 329 li~a~gil~Siig~~~~~~~~~~~~~~~~~------------~aL~~g~~~s~~l~~i~~~~~~~~~l~~~~~~~~~g~~ 396 (683)
+.-..|+++-+-..+..|...+....++-+ .=|+||+-...++.++..+.+.|++.
T Consensus 8 l~i~~gl~sv~~A~~~~~sVl~~~~Gn~rm~eIa~aIreGA~ayL~rqy~tiavv~ivva~ll~~~l~------------ 75 (703)
T COG3808 8 LAIACGLLSVLYAAWAAKSVLRADAGNERMKEIAAAIREGAMAYLARQYKTIAVVGIVVAILLAWFLL------------ 75 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHh------------
Confidence 334456666666666655444433333222 24678888777777776666665532
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhhccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 005682 397 KVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSF 476 (683)
Q Consensus 397 ~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l 476 (683)
.|.--.|.++|-+.+..-|++--+ .|. |-=-+.||++++| +=.+ .-++|.-
T Consensus 76 ----~~~ta~~Fl~GAv~S~~AG~~GM~-vst--rAN~RtAqAAs~~----l~~a------------------l~vaf~s 126 (703)
T COG3808 76 ----SWLTAIGFLLGAVLSAAAGFAGMH-VST--RANVRTAQAASTG----LGKA------------------LDVAFKS 126 (703)
T ss_pred ----hhHHHHHHHHHHHHHhhhccccee-eee--hhhhHHHHHHHhh----hhhh------------------hhhhccc
Confidence 244445566666655555555443 232 3334566766654 2222 3345555
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhcc
Q 005682 477 AAMYGIAVAALGMLSTIATGLAIDA 501 (683)
Q Consensus 477 ~GlyGialAa~GMLst~~i~la~Da 501 (683)
+.+.|...+.+++|....+-+-.-.
T Consensus 127 GaV~Gl~VaGlaLlg~s~~ylv~~~ 151 (703)
T COG3808 127 GAVMGLSVAGLALLGLSLYYLVLTS 151 (703)
T ss_pred CcchhhHHHHHHHHHHHhhhheeec
Confidence 6677777777777776655444333
No 14
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=42.75 E-value=2.8e+02 Score=25.79 Aligned_cols=102 Identities=20% Similarity=0.357 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHhhcCCCcccccchHhHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHH
Q 005682 298 SYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIA 377 (683)
Q Consensus 298 Sy~~si~aamil~~~~~~~~~~~~~~v~~Plli~a~gil~Siig~~~~~~~~~~~~~~~~~~aL~~g~~~s~~l~~i~~~ 377 (683)
+|..+.+..++++....+ .+.+.-.+|..+..+.++++.+|.+..-+ |.+ +|-+-.|..+..+- .+..+
T Consensus 14 ~~~~tl~~~l~~a~ll~~---~~~~e~~~~~~~~~i~~ls~~~GG~~a~~--~~~-----~kG~l~G~~~Gl~y-~~il~ 82 (116)
T PF12670_consen 14 AYIITLILLLLLALLLYF---TSLSESILPWLVVIIYILSVFIGGFYAGR--KAG-----SKGWLHGLLVGLLY-FLILL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHc-----cchHHHHHHHHHHH-HHHHH
Confidence 344444444444433322 13344668888888899999999887632 111 24555555553333 23344
Q ss_pred HHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHH
Q 005682 378 IVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLI 417 (683)
Q Consensus 378 ~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~l 417 (683)
.+++...++.... .....+...|...|.+.|++
T Consensus 83 lis~~~~~~~~~~-------~~~~~~~~~~~~~G~lGG~l 115 (116)
T PF12670_consen 83 LISFLFGPGPFSG-------SSQLLKLLLCLLAGALGGML 115 (116)
T ss_pred HHHHHHccCcchH-------HHHHHHHHHHHHHHHHHhhc
Confidence 4555544331110 11235677888888877753
No 15
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=38.83 E-value=1.1e+02 Score=32.61 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=51.4
Q ss_pred eeecCChhHHH---HHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhh
Q 005682 567 TVDVLTPKVFI---GLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMI 643 (683)
Q Consensus 567 ~~~l~~p~Vl~---GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi 643 (683)
.....||.-++ |.++| =+|++++.+..+.-+|+|++=+|+...+.--+. +++.++-..|.|+|+-+
T Consensus 117 ~~~~~~~r~~IPi~GMiiG---------Nsm~a~slal~r~~~~l~~~~~~ie~~LalGat--~~eA~~~~~r~ai~~al 185 (250)
T PF03649_consen 117 GAPWFDPRYLIPIAGMIIG---------NSMNAVSLALERFYSELRERRDEIEALLALGAT--PREAVRPFIRRAIRAAL 185 (250)
T ss_pred CCCCCChhHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHh
Confidence 45567887765 55544 467999999999999999987776555443333 34555666678888877
Q ss_pred chhhHHHH
Q 005682 644 PPGALVML 651 (683)
Q Consensus 644 ~Pgllail 651 (683)
.|.+=.+-
T Consensus 186 ~P~i~~m~ 193 (250)
T PF03649_consen 186 IPTINSMK 193 (250)
T ss_pred HhHHHhhh
Confidence 77765554
No 16
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=38.14 E-value=1.3e+02 Score=32.95 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc----c-c-eeecC--ChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhc
Q 005682 542 GFAIGSAALVSLALFGAFVSRAG----I-T-TVDVL--TPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFN 613 (683)
Q Consensus 542 GfaIGSAaL~aLaLf~ay~~~~~----~-~-~~~l~--~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFr 613 (683)
++=-+|+.+.-...++.+..... . . -.+.. ++....+.++=..+.++||-.-. .++-...|+-|+.|+|=.
T Consensus 201 Piifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~~~~~~~~~~~y~~~~~~li~~Fs~~~~-~~~~~p~~iA~~lkk~g~ 279 (346)
T PF00344_consen 201 PIIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAYYFSQNLNSPLYIIFYLILIILFSYFFS-FININPKDIAENLKKSGD 279 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHHHTSSSHHHHHHHHHHHHHHHHHHHHHH-TSSSHHHHHHHHCHCTTS
T ss_pred hHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHhCC
Confidence 34445666666666666554321 1 1 13345 78899999999999999998866 888888888888888888
Q ss_pred cCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhhh
Q 005682 614 TIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFG 661 (683)
Q Consensus 614 eipGi~eg~~kPDY~~cV~IsT~~AlkeMi~Pgllail~Pi~vG~~~G 661 (683)
-|||+..|++..+|= -++..+.+.=.-+.-++++ ..|.+++..++
T Consensus 280 ~I~GirpG~~T~~yL--~~~i~~~~~~G~~~l~~ia-~~p~~~~~~~~ 324 (346)
T PF00344_consen 280 YIPGIRPGKPTEKYL--NKVIPRLSFLGALFLALIA-VLPLIFGLFGG 324 (346)
T ss_dssp SSSTCTTSCHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHTTSSS
T ss_pred EeCCCCCChhHHHHH--HHHHHHHhhhhHHHHHHHH-HHHHHHHHHcc
Confidence 899998886555551 1233444444444555555 35777776653
No 17
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=34.40 E-value=4.3e+02 Score=26.07 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 005682 193 MGFLLAANGLLVLFIAINL 211 (683)
Q Consensus 193 mGl~vvglgLl~l~~~~~~ 211 (683)
.|+.+.++|++...+.+.+
T Consensus 142 ~~i~~~glGlll~~~~~~l 160 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVITFYL 160 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666677777655554444
No 18
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=32.81 E-value=2.6e+02 Score=34.07 Aligned_cols=143 Identities=17% Similarity=0.294 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhhC---------------HhHHHHhhccccchhHHHHHHHHHHHH
Q 005682 141 FSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKS---------------VGKAFIVAFRSGAVMGFLLAANGLLVL 205 (683)
Q Consensus 141 ~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~g---------------~~~al~vafr~GsVmGl~vvglgLl~l 205 (683)
.+.+..++|+..-.+=.=+.|+-=.|+--|..++-||- +++..+++=+ .+.-.|.+.++=.+..
T Consensus 510 ~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~-aAlkeMi~Pgll~i~~ 588 (697)
T TIGR01104 510 KVFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPPGLLVMLT 588 (697)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHH-HHHHhhhhhhHHHHHH
Confidence 34556677777777666666777777777777776642 2344444443 3445554443221111
Q ss_pred HHHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHHHHhhccccchhhhhcccccchhhcC--------CCCCCCCCcchh
Q 005682 206 FIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERN--------IPEDDPRNPAVI 277 (683)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEag--------IPEDDPRNPavI 277 (683)
-++.-+ .++.+ -+--.+.|.-.-+-+.|+|+--+||-+-+|=.. +|.| -+-.|.+..+|+
T Consensus 589 Pi~vG~---~~G~~--al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~G~~~~~~~ggKGS~aHkAaVv 656 (697)
T TIGR01104 589 PLIVGF---LFGVE--TLSGVLAGVLVSGVQIAISASNTGGAWDNAKKY-------IEAGSEHARSLGPKGSEAHKAAVI 656 (697)
T ss_pred HHHHHH---hccHH--HHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHH-------HhcCccccccCCCCCcHHhhcccc
Confidence 111111 11111 011233343334557899999999999877654 6665 355678889999
Q ss_pred hccccccccccccccchhh
Q 005682 278 ADNVGDNVGDIAGMGSDLF 296 (683)
Q Consensus 278 ADnVGDNVGD~AGmgADLF 296 (683)
.|.|||=-=|-+|..-+.-
T Consensus 657 GDTVGDPfKDTaGPslNil 675 (697)
T TIGR01104 657 GDTVGDPLKDTSGPSLNIL 675 (697)
T ss_pred CCCCCCCccccccchHhHH
Confidence 9999999999999977744
No 19
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=31.56 E-value=1.2e+02 Score=35.14 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=52.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHH
Q 005682 585 LPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVG 657 (683)
Q Consensus 585 lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi~Pgllail~Pi~vG 657 (683)
+-|+|+.+.++.=|-...++-|..|+|=..|||+.+||+ =-+.+-+..++.+.=.=+.-++++++ |-++|
T Consensus 372 fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpGk~--t~~yL~k~i~r~t~~Ga~~l~~ia~l-p~~~~ 441 (474)
T PTZ00219 372 SCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSS--MVRVLNRYIPTAASFGGMCIGALTIL-ADFLG 441 (474)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 456777777777778888999999999889999988844 44445566677777777777777764 55555
No 20
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=31.10 E-value=49 Score=36.23 Aligned_cols=49 Identities=31% Similarity=0.350 Sum_probs=37.8
Q ss_pred hHHHHHhhhhhccC-cccccccchhhHHHHHHHHHH--HHHHHHhhhccceee
Q 005682 520 HRIRERTDALDAAG-NTTAAIGKGFAIGSAALVSLA--LFGAFVSRAGITTVD 569 (683)
Q Consensus 520 ~eVR~~tD~LDa~G-NTTaAi~KGfaIGSAaL~aLa--Lf~ay~~~~~~~~~~ 569 (683)
+-+||=.++-.+.| |+++-..+-|+| ||++++++ |++.|.+.+.-+.++
T Consensus 187 ~AiRedE~~a~alG~n~~~~Kl~aF~i-sa~~AGiAGaL~a~~~~~v~p~~f~ 238 (314)
T COG4177 187 RAIREDEIAARALGINVTRYKLLAFVI-SAAIAGIAGALYALYLGFVSPESFS 238 (314)
T ss_pred hhhccCHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhceeChhhcc
Confidence 45677777778999 999999999998 56778875 899888766544444
No 21
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=30.50 E-value=3.1e+02 Score=32.63 Aligned_cols=88 Identities=24% Similarity=0.359 Sum_probs=46.2
Q ss_pred cccccccCCcchhhccCCchHH-HHHhhhhhccC---cccccccchhhHHHHHHHHHHHHHHHHhhhccceeecCChhHH
Q 005682 501 AYGPISDNAGGIAEMAGMSHRI-RERTDALDAAG---NTTAAIGKGFAIGSAALVSLALFGAFVSRAGITTVDVLTPKVF 576 (683)
Q Consensus 501 ayGPIaDNAgGIaEMs~l~~eV-R~~tD~LDa~G---NTTaAi~KGfaIGSAaL~aLaLf~ay~~~~~~~~~~l~~p~Vl 576 (683)
+..||.|+ |-| -|-++. .-+|+.|+..| ++-+-+++ |=.+..+++++.++- +.
T Consensus 369 am~PiMe~---Vvk--PLme~is~~iT~~L~~~GVdke~Ae~iGs---I~gaI~aAi~mvA~~---------------v~ 425 (593)
T PRK15374 369 ALNPIMEH---VLK--PLMELIGKAITKALEGLGVDKKTAEMAGS---IVGAIVAAIAMVAVI---------------VV 425 (593)
T ss_pred HHHHHHHH---HHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHHHHHHH---------------HH
Confidence 55666665 222 111222 34777888888 22222222 334556666655442 23
Q ss_pred HHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhh
Q 005682 577 IGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQF 612 (683)
Q Consensus 577 ~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQF 612 (683)
+|...++.--.+++.+ ++.+|+.-.++++|.-||+
T Consensus 426 ~~~v~k~aa~Kl~~~l-~k~ig~~i~~~~~~~lk~~ 460 (593)
T PRK15374 426 VAVVGKGAAAKLGNAL-SKMMGETIKKLVPNVLKQL 460 (593)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4433333333455444 4777888877788876665
No 22
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=28.95 E-value=3.4e+02 Score=33.44 Aligned_cols=143 Identities=18% Similarity=0.323 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhh---------------CHhHHHHhhccccchhHHHHHHHHHHHH
Q 005682 141 FSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARK---------------SVGKAFIVAFRSGAVMGFLLAANGLLVL 205 (683)
Q Consensus 141 ~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~---------------g~~~al~vafr~GsVmGl~vvglgLl~l 205 (683)
.+.+..++|+....+=.=+.|+.=.|+--|..++-|| .+++..+++=+ .+.-.|.+.++=....
T Consensus 573 ~Vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeG~~kPDY~~cV~I~T~-aAlkeMi~Pgll~v~~ 651 (765)
T PLN02255 573 KVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPPGALVMLT 651 (765)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhcCCCCCChHHHHHHHHH-HHHHhhhHHHHHHHHH
Confidence 4566677888777776666777777777777777664 23444444443 3445554443211111
Q ss_pred HHHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHHHHhhccccchhhhhcccccchhhcCC---------CCCCCCCcch
Q 005682 206 FIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNI---------PEDDPRNPAV 276 (683)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagI---------PEDDPRNPav 276 (683)
-++.-++ ++.+ -+--.+.|--.-+-+.|+|+--+||-+-+|=.. +|.|- +-.|+...+|
T Consensus 652 Pi~vg~~---~G~~--al~GlL~G~~vsGv~lAi~maNaGGAWDNAKKy-------IE~G~~~~~~~~ggKGS~aHkAaV 719 (765)
T PLN02255 652 PLIVGTL---FGVE--TLSGVLAGALVSGVQIAISASNTGGAWDNAKKY-------IEAGASEHARSLGPKGSDPHKAAV 719 (765)
T ss_pred HHHHHHH---ccHH--HHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHH-------HHcCccccccccCCCCcHHhhccc
Confidence 1111111 1111 011233444444557899999999999887654 77763 2245666899
Q ss_pred hhccccccccccccccchhh
Q 005682 277 IADNVGDNVGDIAGMGSDLF 296 (683)
Q Consensus 277 IADnVGDNVGD~AGmgADLF 296 (683)
+.|.|||=-=|-+|..-+.-
T Consensus 720 vGDTVGDPfKDTaGPslNiL 739 (765)
T PLN02255 720 IGDTIGDPLKDTSGPSLNIL 739 (765)
T ss_pred cCCCCCCcccccccchHhHH
Confidence 99999999999999977744
No 23
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=28.54 E-value=3.3e+02 Score=33.16 Aligned_cols=144 Identities=23% Similarity=0.367 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhhC---------------HhHHHHhhccccchhHHHHHHHHHHH
Q 005682 140 AFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKS---------------VGKAFIVAFRSGAVMGFLLAANGLLV 204 (683)
Q Consensus 140 ~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~g---------------~~~al~vafr~GsVmGl~vvglgLl~ 204 (683)
+.+.+..++|+..-.+-.-+-|+.-.|+--+..++-||- +.+..+++-| .+.-.|.+.+ ++.
T Consensus 484 p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~EVRrQFre~pGi~eg~~kPdY~~cV~I~T~-~AlkeMi~P~--ll~ 560 (666)
T PRK00733 484 PYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEEVRRQFREIPGIMEGTAKPDYARCVDISTK-AALKEMILPG--LLA 560 (666)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCChHHHHHHHHH-HHHHhhhhHH--HHH
Confidence 467778888988888877778887777777777776642 3344444432 2333333322 111
Q ss_pred HHHHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHHHHhhccccchhhhhcccccchhhcCCCC---CCCCCcchhhccc
Q 005682 205 LFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPE---DDPRNPAVIADNV 281 (683)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPE---DDPRNPavIADnV 281 (683)
+..-.++ ...++.+ -+--.+.|.-.-+-+.|+|.--+||-+-+|-.. +|.|-.+ .|.+..+|+.|.|
T Consensus 561 v~~Pi~v-G~~lG~~--al~G~L~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~g~~gGKgS~aHkAaVvGDTV 630 (666)
T PRK00733 561 VLAPIAV-GFLLGPE--ALGGLLAGAIVTGLLLAIFMANAGGAWDNAKKY-------IEDGNHGGKGSEAHKAAVVGDTV 630 (666)
T ss_pred HHHHHHH-HHHhhHH--HHHHHHHHHHHHHHHHHHHHcccchhHHHHHHH-------HhcCCCCCCCcHHHhccccCCCC
Confidence 1110000 0001111 111233444444567899999999999887654 6665443 4567799999999
Q ss_pred cccccccccccchhh
Q 005682 282 GDNVGDIAGMGSDLF 296 (683)
Q Consensus 282 GDNVGD~AGmgADLF 296 (683)
||=-=|-+|..-+.-
T Consensus 631 GDPfKDTaGPslnil 645 (666)
T PRK00733 631 GDPFKDTAGPALNPL 645 (666)
T ss_pred CCCccccccchhhHH
Confidence 999999999987744
No 24
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=27.79 E-value=3.9e+02 Score=31.76 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccc
Q 005682 459 VIIPIFAIAVSIFVSFSFAAMYGIAVAALGM-LSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTA 537 (683)
Q Consensus 459 t~~Pvl~I~~ai~~sy~l~GlyGialAa~GM-Lst~~i~la~DayGPIaDNAgGIaEMs~l~~eVR~~tD~LDa~GNTTa 537 (683)
+++|++.+.+++..++.+.+++|+-+--+.+ ...+.+.++ .|+ +|--++..-+|.++--|.-+|+-++.+
T Consensus 220 ~~~~l~~~~~~~~~~~g~~~~~g~~l~~~~~~~~~l~lgi~-------vd~--~ihl~~r~~~~~~~g~~~~~ai~~a~~ 290 (719)
T TIGR00921 220 PLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVG-------IDY--GIQTLNRYEEERDIGRAKGEAIVTAVR 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHhhh-------hhh--HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4666677777777666666666654332221 111112233 344 244444444444444555566667777
Q ss_pred cccchhhHHHHHHHHHHHHHHH
Q 005682 538 AIGKGFAIGSAALVSLALFGAF 559 (683)
Q Consensus 538 Ai~KGfaIGSAaL~aLaLf~ay 559 (683)
-+++... .++++..+=|.++
T Consensus 291 ~~g~~i~--~t~~t~~~gf~~l 310 (719)
T TIGR00921 291 RTGRAVL--IALLTTSAGFAAL 310 (719)
T ss_pred hccHHHH--HHHHHHHHHHHHH
Confidence 7777443 3444444434433
No 25
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=27.16 E-value=47 Score=32.94 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.5
Q ss_pred HHHhhhhhHhhhhccccccccC
Q 005682 487 LGMLSTIATGLAIDAYGPISDN 508 (683)
Q Consensus 487 ~GMLst~~i~la~DayGPIaDN 508 (683)
.+||..+...+--|+||||.|.
T Consensus 49 ~~mL~lL~TS~lp~S~GpI~~~ 70 (149)
T PF12331_consen 49 ILMLNLLSTSVLPDSFGPITDD 70 (149)
T ss_pred HHHHHHHHhccCCCCcCCCCCC
Confidence 5899999999999999999986
No 26
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=26.75 E-value=2.7e+02 Score=28.23 Aligned_cols=57 Identities=19% Similarity=0.396 Sum_probs=35.4
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhhhhhHHHH
Q 005682 603 KMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG 667 (683)
Q Consensus 603 ~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi~Pgllail~Pi~vG~~~G~~al~G 667 (683)
=+-|++|+++|+. .+.++++-++.+.+..++.-+.-. +..+.|.+.=+++|...+-|
T Consensus 103 VifdRIre~~~~~-------~~~~~~~~~~~s~~~tl~r~i~t~-~ttll~~~~L~~~g~~~l~~ 159 (189)
T PF02355_consen 103 VIFDRIREELRAS-------RGKSLREAINISIKQTLSRTIDTS-LTTLLAALILFFFGGGSLKG 159 (189)
T ss_dssp HHHHHHHHHHCC--------STS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CHHHH
T ss_pred eehHHHHHHhhhC-------CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHH
Confidence 3669999998763 356788999988888888766533 33444444445666655444
No 27
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=26.56 E-value=4e+02 Score=30.12 Aligned_cols=16 Identities=44% Similarity=1.022 Sum_probs=7.5
Q ss_pred cCChhHHHHHHhhhhH
Q 005682 570 VLTPKVFIGLIVGAML 585 (683)
Q Consensus 570 l~~p~Vl~GlliG~~l 585 (683)
+.-|..++|-.+|..+
T Consensus 321 ~f~P~l~iGa~~G~~~ 336 (418)
T PRK01610 321 VFTPTLFVGLAIGMLY 336 (418)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4445555554444433
No 28
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.50 E-value=1.1e+02 Score=26.50 Aligned_cols=31 Identities=23% Similarity=0.573 Sum_probs=22.9
Q ss_pred HHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 005682 575 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLM 619 (683)
Q Consensus 575 Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~ 619 (683)
+++++++|+..-|+++- ...++|++|+|-|=
T Consensus 3 iilali~G~~~Gff~ar--------------~~~~k~l~~NPpin 33 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR--------------KYMEKQLKENPPIN 33 (64)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHCCCCC
Confidence 56788888888777754 34568999988763
No 29
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=26.23 E-value=56 Score=34.67 Aligned_cols=77 Identities=22% Similarity=0.398 Sum_probs=49.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhhhhhHHHHHhh
Q 005682 591 AMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLA 670 (683)
Q Consensus 591 al~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi~Pgllail~Pi~vG~~~G~~al~GlL~ 670 (683)
+=+|++++.+..+.-+|+|+|=+|+...+.=-+.| ++.++-..|.|+|.-+.|.+=.+-+ +|+. .+=|+..
T Consensus 129 GNsM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat~--~~A~~~~~r~Ai~aaliP~insm~~---vGlV----~LPGmMt 199 (248)
T TIGR00245 129 GNTMNTISLALNRLISMVKSERDEIQGYLSLGATP--KQAIAPFIRNAIKASLIPTVNSTKT---VGLV----SLPGMMT 199 (248)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCH--HHHHHHHHHHHHHHHhhchHHhcch---hhee----echhHHH
Confidence 34678999999999999999977765544433333 3555666677777777777655543 4443 3444445
Q ss_pred hhHHHH
Q 005682 671 GSLVSG 676 (683)
Q Consensus 671 G~~~sG 676 (683)
|.+.+|
T Consensus 200 GqIL~G 205 (248)
T TIGR00245 200 GQILAG 205 (248)
T ss_pred HHHhcC
Confidence 554444
No 30
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=25.82 E-value=28 Score=29.07 Aligned_cols=7 Identities=71% Similarity=1.426 Sum_probs=5.9
Q ss_pred CCCCCcc
Q 005682 269 DDPRNPA 275 (683)
Q Consensus 269 DDPRNPa 275 (683)
.|||||-
T Consensus 39 NDPRNP~ 45 (54)
T PF04911_consen 39 NDPRNPR 45 (54)
T ss_pred cCCCChh
Confidence 6999994
No 31
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=25.38 E-value=4.7e+02 Score=26.77 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhc
Q 005682 478 AMYGIAVAALGMLSTIATGLAID 500 (683)
Q Consensus 478 GlyGialAa~GMLst~~i~la~D 500 (683)
.+-|..++-+|+-++.|..++=-
T Consensus 111 nl~Gmllt~lG~~a~vG~L~ak~ 133 (183)
T PF12263_consen 111 NLVGMLLTLLGAQATVGTLVAKA 133 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999988776543
No 32
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=24.62 E-value=70 Score=34.92 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCC
Q 005682 593 TMKSVGSAALKMVEEVRRQFNTIP 616 (683)
Q Consensus 593 ~m~aVg~aA~~mV~EVRRQFreip 616 (683)
.|.+|.+++..-++|+++|||..+
T Consensus 22 ~m~~i~~G~~~ai~ECq~QF~~~R 45 (310)
T PF00110_consen 22 LMPSIAEGAKMAIEECQHQFRNRR 45 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 689999999999999999999643
No 33
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=24.43 E-value=77 Score=29.65 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHH-HHHHHHH------HhhhhccCCCchhHHH
Q 005682 401 NWQLFLCVAVGLW-AGLIIGF------VTEYYTSNAYSPVQDV 436 (683)
Q Consensus 401 ~~~~f~~~~~Gl~-~g~lI~~------~TeYyTS~~~~PVr~I 436 (683)
.|.+..+++++.+ .++||.+ .-+|+.||+|+|.+|-
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 4666666555544 6777754 5689999999999876
No 34
>PF14045 YIEGIA: YIEGIA protein
Probab=24.03 E-value=1.7e+02 Score=31.90 Aligned_cols=79 Identities=19% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhh--------------------hhcccccCchH----------------------HHHHHHHHHH
Q 005682 332 SIGILVCLITTLFATDI--------------------FEVKAVKEIEP----------------------SLKKQLIIST 369 (683)
Q Consensus 332 a~gil~Siig~~~~~~~--------------------~~~~~~~~~~~----------------------aL~~g~~~s~ 369 (683)
+.|+++|.+|...+... +|+.|.+..++ +=|.-...++
T Consensus 37 ~LG~IAa~LGavaiPAL~~keytAvTFLaLAaqQFRdVR~mER~tL~~le~~ELV~RG~~YIEgIA~~FEaRNYl~m~ts 116 (285)
T PF14045_consen 37 SLGFIAAALGAVAIPALLEKEYTAVTFLALAAQQFRDVRNMERETLTNLEETELVPRGAAYIEGIAKTFEARNYLVMFTS 116 (285)
T ss_pred HHHHHHHHhhhhhhHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHh
Q 005682 370 VLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD 438 (683)
Q Consensus 370 ~l~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~ 438 (683)
+++.+. ..++++..+|.++|++..++.++|++. +-+++||+
T Consensus 117 ~~Ts~~--------------------------~~l~~~~~~g~i~g~i~~~i~~~~~~g--~~i~DIa~ 157 (285)
T PF14045_consen 117 FLTSLA--------------------------YILFFNIWVGVIAGLIAILISKRFMSG--KSIGDIAD 157 (285)
T ss_pred HHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCC--CccccceE
No 35
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.33 E-value=1.5e+02 Score=28.46 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHhhhhh------hhhhh
Q 005682 71 VAKCADIQSAISEGATSF------LFTEY 93 (683)
Q Consensus 71 ~~~m~~Is~~I~eGA~af------L~~qy 93 (683)
-+..++=++..++||..| |+|+|
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666688899999998 66766
No 36
>PRK01844 hypothetical protein; Provisional
Probab=22.02 E-value=1.4e+02 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhh
Q 005682 575 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMI 643 (683)
Q Consensus 575 Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi 643 (683)
+++++++|+..-|+++--.++ +|+||+|-| +...+|+|.
T Consensus 10 ~I~~li~G~~~Gff~ark~~~--------------k~lk~NPpi----------------ne~mir~Mm 48 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMM--------------NYLQKNPPI----------------NEQMLKMMM 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHCCCC----------------CHHHHHHHH
No 37
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=21.86 E-value=2.2e+02 Score=29.83 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhH--HHHhHHHHHhhhhhh---HHHHHhhhhHHHHH
Q 005682 603 KMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGAL--VMLTPLIVGIFFGVE---TLSGVLAGSLVSGV 677 (683)
Q Consensus 603 ~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi~Pgll--ail~Pi~vG~~~G~~---al~GlL~G~~~sG~ 677 (683)
-++|.+||+.|+.+| .|..+++.-+++..+|..+.=.+. ..+.|+... |.+ .++=-+.++++.|.
T Consensus 170 vv~d~i~e~~~~~~~-------~~~~~a~~~a~~~~~~~ii~ttltti~~flpl~~~---~g~~~~~~a~~~~~Gli~~t 239 (246)
T TIGR00966 170 VVFDRIRENLRKYTR-------KTFTEVINLSINQTLSRTINTSLTTLLAVLALYVF---GGGVIKDFSLALLVGVIVGT 239 (246)
T ss_pred EEehHHHHHHhhccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHH
Confidence 366888887764222 356777766655555544432222 223343321 211 23333555555555
Q ss_pred HHhhc
Q 005682 678 QVILE 682 (683)
Q Consensus 678 ~lAi~ 682 (683)
+..++
T Consensus 240 ~~sl~ 244 (246)
T TIGR00966 240 YSSIF 244 (246)
T ss_pred HHHHH
Confidence 55544
No 38
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=21.10 E-value=39 Score=40.82 Aligned_cols=16 Identities=56% Similarity=0.845 Sum_probs=14.4
Q ss_pred CCCCCCCCCcchhhcc
Q 005682 265 NIPEDDPRNPAVIADN 280 (683)
Q Consensus 265 gIPEDDPRNPavIADn 280 (683)
-|-|||||||+=||..
T Consensus 794 ~I~DhDPR~paYIAtQ 809 (1004)
T KOG0793|consen 794 PIMDHDPRNPAYIATQ 809 (1004)
T ss_pred ccccCCCCccceeecc
Confidence 4789999999999987
No 39
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.80 E-value=97 Score=29.55 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCch
Q 005682 408 VAVGLWAGLIIGFVTEYYTSNAYSP 432 (683)
Q Consensus 408 ~~~Gl~~g~lI~~~TeYyTS~~~~P 432 (683)
+++|+++|++||++.-.+++.+.+-
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQK 26 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhh
Confidence 4678888888888888888776443
No 40
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.74 E-value=1.2e+02 Score=28.84 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcc
Q 005682 402 WQLFLCVAVGLWAGLIIGFVTEYYTS 427 (683)
Q Consensus 402 ~~~f~~~~~Gl~~g~lI~~~TeYyTS 427 (683)
+++..=.+.|.++|..|||++++|-.
T Consensus 46 ~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445556666666666666666643
No 41
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=20.72 E-value=3.6e+02 Score=27.98 Aligned_cols=111 Identities=15% Similarity=0.216 Sum_probs=59.9
Q ss_pred ccCCchHHHHHhhhhhccCcccccccchhhH--HHHHHHHHHHHHHHHhhhccceeecCChhHHHHHHhhhhHHHHHHhH
Q 005682 515 MAGMSHRIRERTDALDAAGNTTAAIGKGFAI--GSAALVSLALFGAFVSRAGITTVDVLTPKVFIGLIVGAMLPYWFSAM 592 (683)
Q Consensus 515 Ms~l~~eVR~~tD~LDa~GNTTaAi~KGfaI--GSAaL~aLaLf~ay~~~~~~~~~~l~~p~Vl~GlliG~~lpflFsal 592 (683)
|+.+|++.|++...-. -=|+.+-.+++=.- -+-.+..+.||.-++--.+ . +.-...++|+++|..+++++.-+
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~llLf~~WllLsg--~--~s~~~l~lG~i~~~~v~~l~~~~ 75 (201)
T PRK08382 1 MSRMPFYLRERLEEVK-ERVLYEIYEAQKLPPWERFVLTWLILLAFWVIISG--D--LSPRGLILGALTTLIIASYMRDF 75 (201)
T ss_pred CCcchHHHHHHHhhcc-cccceeecccccCCcchHHHHHHHHHHHHHHHHhC--C--cCHHHHHHHHHHHHHHHHHHHhh
Confidence 7889999999876651 11222222211110 0135556666665544222 1 22345788888888887777665
Q ss_pred hHH-----------------------------HHHHHHHHHHHHHHHhhccCCCCCCC--CCCCChhhHH
Q 005682 593 TMK-----------------------------SVGSAALKMVEEVRRQFNTIPGLMEG--TTKPDYATCV 631 (683)
Q Consensus 593 ~m~-----------------------------aVg~aA~~mV~EVRRQFreipGi~eg--~~kPDY~~cV 631 (683)
..+ -+-++-.++...|=+ .+-.||+.+- +-|-|+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~eivkANi~Va~~VL~-~~i~Pgiv~v~~~l~~~~~~~~ 144 (201)
T PRK08382 76 LTEDIRRSGHLLWKILYFALIYLPQYLIIMAFRLLESNLKVAKHVIF-MDINPGIVKIKTDLHSDTGITI 144 (201)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeccCCChHHHHH
Confidence 321 233455555555554 4556887654 4455665543
No 42
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=20.72 E-value=5.5e+02 Score=29.31 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhheehhhHHHHHHHHHHHHhhcccCcccCCCcccccc---cc---cccchhhhhhHHHHH
Q 005682 72 AKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQ---QK---MCKPALATAAFSTVS 145 (683)
Q Consensus 72 ~~m~~Is~~I~eGA~afL~~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~a~~ 145 (683)
+-.|.+--.+--..--|...+||=+-...+++.+++..+..... +..-+|.-. +| .-.+.....+.+...
T Consensus 218 ~~~k~~~~~~~il~~v~~ln~yrGvp~~vlv~~vl~~~~~fvt~----rT~fGR~VyAiGGN~eAA~LSGInv~r~t~~v 293 (394)
T COG4214 218 FVLKLLVIAAIILGLVYVLNSYRGVPNPVLVLLVLLIVFTFVTT----RTVFGRRVYAIGGNPEAARLSGINVERVTLLV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhh----hceeeeEEEEecCCHHHHHhcCCceeehhHHH
Confidence 34444444444444568888998877666666665544321100 000001000 00 001111223456666
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhhCHhHHHHhhccccchh
Q 005682 146 FLLGAITSVLSGFLGMKIATYANARTTLEARKSVGKAFIVAFRSGAVM 193 (683)
Q Consensus 146 Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~g~~~al~vafr~GsVm 193 (683)
|.. +..+|..-|+-.+.|-|+-|-.|-...=-++..-||-||+.|
T Consensus 294 F~~---mGvl~AiAgli~taRL~aatp~AG~g~ELdaIAA~fIGGtSl 338 (394)
T COG4214 294 FVI---MGVLAAIAGLILTARLNAATPSAGTGFELDAIAACFIGGTSL 338 (394)
T ss_pred HHH---HHHHHHHHHHHHHHHhhcCCcCCCcchhHHHHHHHHhccccc
Confidence 754 444555556777888887766554433337888889887664
No 43
>smart00097 WNT1 found in Wnt-1.
Probab=20.35 E-value=91 Score=34.12 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q 005682 593 TMKSVGSAALKMVEEVRRQFNTI 615 (683)
Q Consensus 593 ~m~aVg~aA~~mV~EVRRQFrei 615 (683)
.|.+|.+++..-++|+++|||..
T Consensus 19 ~~~~v~~g~~~ai~ECq~QF~~~ 41 (305)
T smart00097 19 VMISVAEGAQEGIEECQHQFRFR 41 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 47799999999999999999964
No 44
>PRK00523 hypothetical protein; Provisional
Probab=20.24 E-value=1.7e+02 Score=25.97 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhh
Q 005682 575 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMI 643 (683)
Q Consensus 575 Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi 643 (683)
+++++++|+..-|+++--.|+ +|+||+|-| +...+|+|.
T Consensus 11 ~i~~li~G~~~Gffiark~~~--------------k~l~~NPpi----------------ne~mir~M~ 49 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFK--------------KQIRENPPI----------------TENMIRAMY 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHCcCC----------------CHHHHHHHH
Done!