Query 005682
Match_columns 683
No_of_seqs 151 out of 753
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 04:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005682.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005682hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d4sgbi_ g.69.1.1 (I:) Plant ch 27.0 8.4 0.00061 28.4 0.7 9 267-275 26-34 (51)
2 d1tiha_ g.69.1.1 (A:) Multidom 23.2 11 0.00084 27.8 0.8 10 267-276 27-36 (53)
3 d1pjua1 g.69.1.1 (A:16-74) Wou 16.3 18 0.0013 27.3 0.5 9 267-275 35-43 (59)
4 d1jboa_ a.1.1.3 (A:) Phycocyan 12.6 75 0.0055 28.0 3.9 40 594-633 41-87 (162)
5 d1jhfa1 a.4.5.2 (A:2-72) LexA 11.3 45 0.0032 25.4 1.6 25 417-441 10-35 (71)
6 d1oyvi_ g.69.1.1 (I:) Wound-in 10.9 33 0.0024 28.9 0.8 10 267-276 50-59 (116)
7 d1lkta_ b.90.1.1 (A:) Head-bin 9.7 41 0.003 28.0 0.9 29 247-275 11-39 (104)
8 d2d1ya1 c.2.1.2 (A:2-249) Hypo 8.4 1.1E+02 0.0077 27.9 3.4 44 601-644 63-124 (248)
9 d1yuaa2 g.41.3.3 (A:66-122) Pr 8.0 51 0.0037 24.8 0.7 11 267-277 10-21 (57)
10 d1iwga8 f.35.1.1 (A:513-566,A: 7.2 5.8E+02 0.043 22.2 8.2 42 598-651 125-166 (222)
No 1
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=27.04 E-value=8.4 Score=28.45 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=7.5
Q ss_pred CCCCCCCcc
Q 005682 267 PEDDPRNPA 275 (683)
Q Consensus 267 PEDDPRNPa 275 (683)
-|.|||||-
T Consensus 26 GeSdp~npk 34 (51)
T d4sgbi_ 26 GQSDPKKPK 34 (51)
T ss_dssp CCBCTTSCC
T ss_pred CCCCCCCCC
Confidence 488999994
No 2
>d1tiha_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=23.16 E-value=11 Score=27.83 Aligned_cols=10 Identities=60% Similarity=1.019 Sum_probs=7.9
Q ss_pred CCCCCCCcch
Q 005682 267 PEDDPRNPAV 276 (683)
Q Consensus 267 PEDDPRNPav 276 (683)
-|.|||||-.
T Consensus 27 Gesdp~nPK~ 36 (53)
T d1tiha_ 27 GESDPRNPKA 36 (53)
T ss_dssp CCCCSSSSCC
T ss_pred CCCCCCCCCc
Confidence 5889999953
No 3
>d1pjua1 g.69.1.1 (A:16-74) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=16.31 E-value=18 Score=27.30 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.3
Q ss_pred CCCCCCCcc
Q 005682 267 PEDDPRNPA 275 (683)
Q Consensus 267 PEDDPRNPa 275 (683)
-|.|||||-
T Consensus 35 Gesdp~npk 43 (59)
T d1pjua1 35 GESDPKRPN 43 (59)
T ss_dssp CCBBTTBCC
T ss_pred CcCCCCCCC
Confidence 488999985
No 4
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=12.61 E-value=75 Score=27.95 Aligned_cols=40 Identities=13% Similarity=0.354 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHh-hccCCCCCC--CCCCC---C-hhhHHHH
Q 005682 594 MKSVGSAALKMVEEVRRQ-FNTIPGLME--GTTKP---D-YATCVKI 633 (683)
Q Consensus 594 m~aVg~aA~~mV~EVRRQ-FreipGi~e--g~~kP---D-Y~~cV~I 633 (683)
-+.....+.++|+|.+++ |++.|.+.+ |..-| + +++|.+=
T Consensus 41 a~~L~~na~~IV~~A~~~l~~~~P~l~~~gG~~y~~~~~r~~~C~RD 87 (162)
T d1jboa_ 41 ARALTNNAQSLIDGAAQAVYQKFPYTTTMQGSQYASTPEGKAKCARD 87 (162)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHCGGGGTSCSTTSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcCccCCCCccccccHHHHHHHHHH
Confidence 355667789999999888 556898875 43444 2 5778653
No 5
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=11.30 E-value=45 Score=25.37 Aligned_cols=25 Identities=8% Similarity=0.316 Sum_probs=20.6
Q ss_pred HHHHHhhhhccCCCch-hHHHHhhhc
Q 005682 417 IIGFVTEYYTSNAYSP-VQDVADSCR 441 (683)
Q Consensus 417 lI~~~TeYyTS~~~~P-Vr~IA~as~ 441 (683)
+.-++.+|+..+.|.| +|||++...
T Consensus 10 vL~~I~~~~~~~G~~Ps~rei~~~~g 35 (71)
T d1jhfa1 10 VFDLIRDHISQTGMPPTRAEIAQRLG 35 (71)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcC
Confidence 4568899999999988 689998764
No 6
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=10.92 E-value=33 Score=28.91 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=7.7
Q ss_pred CCCCCCCcch
Q 005682 267 PEDDPRNPAV 276 (683)
Q Consensus 267 PEDDPRNPav 276 (683)
-|.|||||-.
T Consensus 50 Gesdp~nPKa 59 (116)
T d1oyvi_ 50 GESDPKRPNA 59 (116)
T ss_dssp CCBCSSSCCE
T ss_pred CccCCCCCCc
Confidence 4889999853
No 7
>d1lkta_ b.90.1.1 (A:) Head-binding domain of phage P22 tailspike protein {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=9.70 E-value=41 Score=28.01 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=21.9
Q ss_pred ccchhhhhcccccchhhcCCCCCCCCCcc
Q 005682 247 IYTKAADVGADLVGKVERNIPEDDPRNPA 275 (683)
Q Consensus 247 IyTKAADVGADLVGKVEagIPEDDPRNPa 275 (683)
+||-+-.-=++.-||+=-|=...|||||+
T Consensus 11 ~ftm~r~F~~~~~GKiYIGk~~TDP~~p~ 39 (104)
T d1lkta_ 11 IFTESRSFKAVANGKIYIGQIDTDPVNPA 39 (104)
T ss_dssp CCBCSSSSCBCTTEEEEEESTTSCTTSGG
T ss_pred hhcccHHHHhhcCCcEEEecCCCCCCCcc
Confidence 35555555567778888888899999996
No 8
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}
Probab=8.42 E-value=1.1e+02 Score=27.88 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhccCCCCC-----------CCCCCCChhhHHHH-------HHHHHHhhhhc
Q 005682 601 ALKMVEEVRRQFNTIPGLM-----------EGTTKPDYATCVKI-------STDASIKEMIP 644 (683)
Q Consensus 601 A~~mV~EVRRQFreipGi~-----------eg~~kPDY~~cV~I-------sT~~AlkeMi~ 644 (683)
..++++|+.++|..+..+. +.....|+++++++ +||++++.|..
T Consensus 63 v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~ 124 (248)
T d2d1ya1 63 RVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRK 124 (248)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccc
Confidence 3578899999998765433 22334578999998 78888888875
No 9
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=8.01 E-value=51 Score=24.81 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=7.8
Q ss_pred CCCCCC-Ccchh
Q 005682 267 PEDDPR-NPAVI 277 (683)
Q Consensus 267 PEDDPR-NPavI 277 (683)
|+-||- ||+||
T Consensus 10 P~~D~dGn~~vv 21 (57)
T d1yuaa2 10 PQQDPEGNKTMV 21 (57)
T ss_dssp CSSCTTCCCEEE
T ss_pred CccCCCCCEeEE
Confidence 666665 88887
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.23 E-value=5.8e+02 Score=22.20 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHH
Q 005682 598 GSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVML 651 (683)
Q Consensus 598 g~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~~AlkeMi~Pgllail 651 (683)
-+.+.-++|+.|+ .++.+ ..|.++.+...++ ++..|-+..-+
T Consensus 125 v~~~i~~~~~~~~-~~~~~-------g~~~~~Ai~~a~~----~~~~~i~~t~l 166 (222)
T d1iwga8 125 AKNAILIVEFAKD-LMDKE-------GKGLIEATLDAVR----MRLRPILMTSL 166 (222)
T ss_dssp HHHHHHHHHHHHH-HTTSS-------CCCTTHHHHHHHH----TTHHHHHHHHH
T ss_pred hhHHHHHHHHhcc-ccccc-------cCCHHHHHHHHHH----HHhhhhhhhHH
Confidence 3455566666544 22212 2244555555554 44445444433
Done!