BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005683
         (683 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
           With Mn And Udp-2f-Galactose
 pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
           With Donor And Acceptor Sugar Analogs
          Length = 311

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 22/187 (11%)

Query: 480 NPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGA-VETCGE 538
           N +++S+  + R  L +     +K+L+LD D++V+  LT LW  DL     GA ++   E
Sbjct: 75  NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE 134

Query: 539 SFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMNEDRTL 598
               + + +   +      +  NA     G+ + +LK+W++ DI     +W    +D   
Sbjct: 135 RQEGYKQKIGXADG----EYYFNA-----GVLLINLKKWRRHDIFKXSSEWVEQYKDVXQ 185

Query: 599 WK----LGTLPPGLITFYNLTHPLEKSWHVLGLGYNPS-------VDRSE-IENAAVVHY 646
           ++    L  L  G + + N       + +     +  S        DR+  +   AV HY
Sbjct: 186 YQDQDILNGLFKGGVCYANSRFNFXPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVSHY 245

Query: 647 NGNMKPW 653
            G  KPW
Sbjct: 246 CGPAKPW 252


>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
           Lgtc
          Length = 311

 Score = 42.4 bits (98), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 22/187 (11%)

Query: 480 NPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGA-VETCGE 538
           N +++S+  + R  L +     +K+L+LD D++V+  LT LW  DL     GA ++   E
Sbjct: 75  NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVE 134

Query: 539 SFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMNEDRTL 598
               + + +   +      +  NA     G+ + +LK+W++ DI  +  +W    +D   
Sbjct: 135 RQEGYKQKIGMADG----EYYFNA-----GVLLINLKKWRRHDIFKMSCEWVEQYKDVMQ 185

Query: 599 WK----LGTLPPGLITFYNLTHPLEKSWHVLGLGYNPS-------VDRSE-IENAAVVHY 646
           ++    L  L  G + + N       + +        S        DR+  +   AV HY
Sbjct: 186 YQDEDILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHY 245

Query: 647 NGNMKPW 653
            G  KPW
Sbjct: 246 CGPAKPW 252


>pdb|3CIV|A Chain A, Crystal Structure Of The Endo-Beta-1,4-Mannanase From
           Alicyclobacillus Acidocaldarius
          Length = 343

 Score = 33.9 bits (76), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 446 PVLRQLESASMKEYYF-KADHPTTLSSGASNLKYRNPKYLSMLNHLRFY 493
           PVLR++  A  K  +F +   P+   SGA    YR+P  + +    RFY
Sbjct: 237 PVLREVAEAHEKPLFFMEVGCPSRSGSGACPWDYRHPGAVCLDEQARFY 285


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,388,416
Number of Sequences: 62578
Number of extensions: 846784
Number of successful extensions: 2572
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2566
Number of HSP's gapped (non-prelim): 11
length of query: 683
length of database: 14,973,337
effective HSP length: 105
effective length of query: 578
effective length of database: 8,402,647
effective search space: 4856729966
effective search space used: 4856729966
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)