Query 005683
Match_columns 683
No_of_seqs 309 out of 1317
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 1.6E-44 5.5E-49 372.7 15.1 257 371-676 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 8.9E-40 3E-44 341.2 15.5 249 372-669 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 2E-25 6.8E-30 236.5 14.3 224 371-670 4-254 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 1.5E-23 5.2E-28 216.0 11.5 220 375-670 9-255 (263)
5 3v1a_A Computational design, M 55.3 13 0.00043 29.1 3.9 38 228-265 6-43 (48)
6 1yzm_A FYVE-finger-containing 49.9 17 0.00058 28.7 3.9 39 227-265 6-44 (51)
7 1z0k_B FYVE-finger-containing 48.1 17 0.00059 30.3 3.9 41 226-266 23-63 (69)
8 1z0j_B FYVE-finger-containing 46.7 20 0.00068 29.1 4.0 40 227-266 13-52 (59)
9 2lk9_A Bone marrow stromal ant 25.7 31 0.0011 25.1 1.7 19 25-43 13-31 (35)
10 1o7q_A N-acetyllactosaminide a 21.3 6.3E+02 0.022 26.3 11.2 121 494-626 132-262 (289)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=1.6e-44 Score=372.72 Aligned_cols=257 Identities=16% Similarity=0.174 Sum_probs=185.4
Q ss_pred ceeEEEecC-Cc-cchhhHHHHHHHhcCCCCceEEEEEecCCChhhhhhhhhcCCCCCceEEEeeccchhhcccccchhh
Q 005683 371 LYHYALFSD-NV-LAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVL 448 (683)
Q Consensus 371 ~~HIai~sD-Ny-LaasVvInSil~Nsk~p~~ivFHIVTD~ln~~amk~wFl~n~~~~a~I~v~nve~f~wl~~~y~pvL 448 (683)
.+|||+++| || .+++|+|+|++.|+++ ++++|||++++++.+..+.+..+....+..|++..++. +++
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~-------- 74 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLF-------- 74 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHH--------
Confidence 489999998 78 6789999999999976 67999999999987765543333222345566555432 000
Q ss_pred hhhcccccEEEEecCCCCCccccCccccccCCCCCcchhhHHHHhhhcccC-CCCeEEEEecCEEEeccchHHhccCCCC
Q 005683 449 RQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYP-KLNKILFLDDDIVVQKDLTRLWSVDLQG 527 (683)
Q Consensus 449 kqles~~~~~y~F~~~~~~~L~~~~~~l~~~n~~y~S~~~y~Rf~IPeLLP-~ldKVLYLDaDvIV~~DLseLw~iDL~g 527 (683)
. .++..+++|.++|+||++|++|| +++||||||+|+||++||++||++|++|
T Consensus 75 -------------~--------------~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~ 127 (276)
T 3tzt_A 75 -------------S--------------FAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISD 127 (276)
T ss_dssp ------------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTT
T ss_pred -------------h--------------cCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCC
Confidence 0 01123567999999999999999 5999999999999999999999999999
Q ss_pred CeEEEeeccCcc-ccccccccCcCCcccccCCCCCCcceeecceeccchHHHHhhHHHHHHHHHHHcCCCccccCCCcch
Q 005683 528 KVNGAVETCGES-FHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMNEDRTLWKLGTLPP 606 (683)
Q Consensus 528 kviGAV~Dc~~~-f~ry~~yLnfs~P~i~~~f~~~~~YFNSGVmLiNL~kWRk~nit~k~~~~l~~~~d~~l~~~gdLp~ 606 (683)
+.+|||+||... +.++.. ..+++...||||||||||||++||+.++++++++|++.+..... .+||+.
T Consensus 128 ~~~aav~d~~~~~~~~~~~---------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~--~~DQd~ 196 (276)
T 3tzt_A 128 YILAAASHTGKTDMANNVN---------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLL--LPDQDI 196 (276)
T ss_dssp SSEEEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHH
T ss_pred CeEEEEEecccchHHHHHH---------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccccc--CCChhH
Confidence 999999999642 111111 12344446999999999999999999999999999988764332 356677
Q ss_pred hhhhhccceeeccc-ccccccCCCCCC-----cc----cccCCCceEEEccCCCCCcccccccccHHHHHHHHhCCCCcc
Q 005683 607 GLITFYNLTHPLEK-SWHVLGLGYNPS-----VD----RSEIENAAVVHYNGNMKPWLELAMTKYRSYWTKYIKYDHPYL 676 (683)
Q Consensus 607 ~nl~F~g~i~~Ld~-~WN~l~lgy~~~-----i~----~~~i~na~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~d~pfl 676 (683)
+|++|.+++++||. +||+++. +... .. ....++|+||||+|+.|||+..+.++|+++||+|+++..++|
T Consensus 197 LN~~f~~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 197 LNAMYGDRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp HHHHHGGGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 89999999999998 9999963 2210 01 123568999999999999999999999999999998877765
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=8.9e-40 Score=341.20 Aligned_cols=249 Identities=18% Similarity=0.244 Sum_probs=187.0
Q ss_pred eeEEEecC-Cc-cchhhHHHHH-HHhcCCCCceEEEEEecCCChhhhhhhhhcCCCCCceEEEeeccchhhcccccchhh
Q 005683 372 YHYALFSD-NV-LAASVVVNST-IMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVL 448 (683)
Q Consensus 372 ~HIai~sD-Ny-LaasVvInSi-l~Nsk~p~~ivFHIVTD~ln~~amk~wFl~n~~~~a~I~v~nve~f~wl~~~y~pvL 448 (683)
+|||+++| || .+++|+|+|+ +.|++ .+++|||++++++.+..+.+..+....+..|++..++.- ++
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~-~~-------- 69 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE-DF-------- 69 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG-GG--------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH-HH--------
Confidence 69999988 78 6789999999 98874 569999999999877655443332222344555444310 00
Q ss_pred hhhcccccEEEEecCCCCCccccCccccccC-CCCCcchhhHHHHhhhcccCCCCeEEEEecCEEEeccchHHhccCCCC
Q 005683 449 RQLESASMKEYYFKADHPTTLSSGASNLKYR-NPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQG 527 (683)
Q Consensus 449 kqles~~~~~y~F~~~~~~~L~~~~~~l~~~-n~~y~S~~~y~Rf~IPeLLP~ldKVLYLDaDvIV~~DLseLw~iDL~g 527 (683)
. .++ +..++|..+|+||++|++||+++||||||+|+||++||++||++|++|
T Consensus 70 -------------~--------------~~~~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~ 122 (311)
T 1g9r_A 70 -------------A--------------GFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGD 122 (311)
T ss_dssp -------------T--------------TSCCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTT
T ss_pred -------------h--------------cCccccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCC
Confidence 0 011 135789999999999999999999999999999999999999999999
Q ss_pred CeEEEeeccCccc-cccccccCcCCcccccCCCCCCcceeecceeccchHHHHhhHHHHHHHHHHHcCCCccccCCCcch
Q 005683 528 KVNGAVETCGESF-HRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMNEDRTLWKLGTLPP 606 (683)
Q Consensus 528 kviGAV~Dc~~~f-~ry~~yLnfs~P~i~~~f~~~~~YFNSGVmLiNL~kWRk~nit~k~~~~l~~~~d~~l~~~gdLp~ 606 (683)
+++|||+||.... ..+...+ ++.+..+||||||||||+++||+.++++++++|++.+.....| +||+.
T Consensus 123 ~~~aav~d~~~~~~~~~~~~~---------~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~--~DQd~ 191 (311)
T 1g9r_A 123 NWLGASIDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQY--QDQDI 191 (311)
T ss_dssp CSEEEEECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSS--HHHHH
T ss_pred cEEEEEeccchhhhHHHHHhc---------CCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCcc--CCcCH
Confidence 9999999985321 1122222 3444578999999999999999999999999999877654333 44556
Q ss_pred hhhhhccceeecccccccccCCCC---C----C--cc-----cccCCCceEEEccCCCCCcccccccccHHHHHHHH
Q 005683 607 GLITFYNLTHPLEKSWHVLGLGYN---P----S--VD-----RSEIENAAVVHYNGNMKPWLELAMTKYRSYWTKYI 669 (683)
Q Consensus 607 ~nl~F~g~i~~Ld~~WN~l~lgy~---~----~--i~-----~~~i~na~IIHY~G~~KPW~~~~~~~y~~lW~kY~ 669 (683)
+|++|.++++.||.+||++..++. . . .. ....++++||||+|+.|||...+.+++.++|..+.
T Consensus 192 lN~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~ 268 (311)
T 1g9r_A 192 LNGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268 (311)
T ss_dssp HHHHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHH
T ss_pred HHHHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHH
Confidence 789999999999999999853211 0 0 00 11235889999999999999998877777776665
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.92 E-value=2e-25 Score=236.50 Aligned_cols=224 Identities=16% Similarity=0.177 Sum_probs=150.1
Q ss_pred ceeEEEecC-Cc-cchhhHHHHHHHhcCCCCceEEEEEecCCChhhhhhhhhcCCCCCceEEEeeccchhhcccccchhh
Q 005683 371 LYHYALFSD-NV-LAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVL 448 (683)
Q Consensus 371 ~~HIai~sD-Ny-LaasVvInSil~Nsk~p~~ivFHIVTD~ln~~amk~wFl~n~~~~a~I~v~nve~f~wl~~~y~pvL 448 (683)
..+|++++| +| .++.|++.|+..|+++ ..+++ +++++++....+.+..... . |+.++.+. .
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~~----~--v~~v~~l~---~------ 66 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVFD----E--VITVDILD---S------ 66 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHCS----E--EEECCTTS---T------
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhCC----E--EEEEeecC---C------
Confidence 467788777 78 6778999999999865 45555 6777877665444333211 1 22222110 0
Q ss_pred hhhcccccEEEEecCCCCCccccCccccc-cCCCCCcchhhHHHHhhhcccCCCCeEEEEecCEEEeccchHHhccCCCC
Q 005683 449 RQLESASMKEYYFKADHPTTLSSGASNLK-YRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQG 527 (683)
Q Consensus 449 kqles~~~~~y~F~~~~~~~L~~~~~~l~-~~n~~y~S~~~y~Rf~IPeLLP~ldKVLYLDaDvIV~~DLseLw~iDL~g 527 (683)
..+ .++. +.++ ....+|+||++|++ ++++||||||+|+||++||++||+++
T Consensus 67 ---------------~~~-------~~~~~~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~--- 118 (333)
T 1ll2_A 67 ---------------GDS-------AHLTLMKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE--- 118 (333)
T ss_dssp ---------------TST-------THHHHHHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC---
T ss_pred ---------------cch-------hhccccccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC---
Confidence 000 0000 0111 23589999999996 78999999999999999999999986
Q ss_pred CeEEEeeccCccccccccccCcCCcccccCCCCCCcceeecceeccchHHHHhhHHHHHHHHHHHcCCCccccCCCcchh
Q 005683 528 KVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMNEDRTLWKLGTLPPG 607 (683)
Q Consensus 528 kviGAV~Dc~~~f~ry~~yLnfs~P~i~~~f~~~~~YFNSGVmLiNL~kWRk~nit~k~~~~l~~~~d~~l~~~gdLp~~ 607 (683)
.+|||+|.+ | .+||||||||||++. +..+++.+++..+. .+..+||+.+
T Consensus 119 -~~aAv~d~~-----------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~---~~~~~DQ~~L 167 (333)
T 1ll2_A 119 -ELSAAPDPG-----------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQG---SFDGGDQGLL 167 (333)
T ss_dssp -SSEEEECSS-----------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTC---CTTSSHHHHH
T ss_pred -ceeEEecCC-----------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcC---CCCCCCHHHH
Confidence 478888752 1 259999999999863 34455566665543 2345677778
Q ss_pred hhhhccce-----eecccccccccCC-CCCCcc-cccCCCceEEEccCCCCCccccccc-----------------ccHH
Q 005683 608 LITFYNLT-----HPLEKSWHVLGLG-YNPSVD-RSEIENAAVVHYNGNMKPWLELAMT-----------------KYRS 663 (683)
Q Consensus 608 nl~F~g~i-----~~Ld~~WN~l~lg-y~~~i~-~~~i~na~IIHY~G~~KPW~~~~~~-----------------~y~~ 663 (683)
|.+|.+.+ ..||.+||++... |...-. ....++++||||+|..|||...+.+ .+.+
T Consensus 168 N~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (333)
T 1ll2_A 168 NTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLN 247 (333)
T ss_dssp HHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHH
T ss_pred HHHHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHH
Confidence 88887654 7899999998642 221000 1224689999999999999876432 4567
Q ss_pred HHHHHHh
Q 005683 664 YWTKYIK 670 (683)
Q Consensus 664 lW~kY~~ 670 (683)
.||.++.
T Consensus 248 ~WW~~~~ 254 (333)
T 1ll2_A 248 VWWDIFT 254 (333)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8998876
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.89 E-value=1.5e-23 Score=216.02 Aligned_cols=220 Identities=16% Similarity=0.192 Sum_probs=146.6
Q ss_pred EEecC-Cc-cchhhHHHHHHHhcCCCCceEEEEEecCCChhhhhhhhhcCCCCCceEEEeeccchhhcccccchhhhhhc
Q 005683 375 ALFSD-NV-LAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLE 452 (683)
Q Consensus 375 ai~sD-Ny-LaasVvInSil~Nsk~p~~ivFHIVTD~ln~~amk~wFl~n~~~~a~I~v~nve~f~wl~~~y~pvLkqle 452 (683)
.+++| +| .++.|++.|+..++++ .++++ +++++++....+.+-... . .++.++..+ .
T Consensus 9 Tl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~~----~--~vi~V~~l~---~---------- 67 (263)
T 3u2u_A 9 TLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETVF----D--EVIMVDVLD---S---------- 67 (263)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHS----S--EEEECCCCC---C----------
T ss_pred EEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHcC----C--eEEEeeecC---C----------
Confidence 44555 78 6778999999998864 34544 677888765544433221 1 122222110 0
Q ss_pred ccccEEEEecCCCCCccccCccccc-cCCCCCcchhhHHHHhhhcccCCCCeEEEEecCEEEeccchHHhccCCCCCeEE
Q 005683 453 SASMKEYYFKADHPTTLSSGASNLK-YRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNG 531 (683)
Q Consensus 453 s~~~~~y~F~~~~~~~L~~~~~~l~-~~n~~y~S~~~y~Rf~IPeLLP~ldKVLYLDaDvIV~~DLseLw~iDL~gkviG 531 (683)
. ...+++ +.++. + ..+|.|++++++. +++||||||+|++|++||++||+++ .+|
T Consensus 68 -------------~-----~~~~~~~~~rp~-~-~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~a 122 (263)
T 3u2u_A 68 -------------G-----DSAHLTLMKRPE-L-GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELS 122 (263)
T ss_dssp -------------C-----CHHHHHHTTCTT-G-GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSE
T ss_pred -------------c-----chhhhhhhcCcc-h-hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cce
Confidence 0 000000 01122 2 4689999999986 5999999999999999999999987 478
Q ss_pred EeeccCccccccccccCcCCcccccCCCCCCcceeecceeccchHHHHhhHHHHHHHHHHHcCCCccccCCCcchhhhhh
Q 005683 532 AVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMNEDRTLWKLGTLPPGLITF 611 (683)
Q Consensus 532 AV~Dc~~~f~ry~~yLnfs~P~i~~~f~~~~~YFNSGVmLiNL~kWRk~nit~k~~~~l~~~~d~~l~~~gdLp~~nl~F 611 (683)
||+|.+ + ..||||||||||++. ++.+++.++++.... +..+||+.+|.+|
T Consensus 123 A~~d~~-----------~------------~~~fNsGv~li~p~~----~~~~~l~~~~~~~~~---~~~~DQd~LN~~f 172 (263)
T 3u2u_A 123 AAPDPG-----------W------------PDCFNSGVFVYQPSV----ETYNQLLHLASEQGS---FDGGDQGILNTFF 172 (263)
T ss_dssp EEECTT-----------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHHCC---TTSSHHHHHHHHT
T ss_pred EeccCC-----------C------------CccccCeEEEEcccH----HHHHHHHHHHHhcCC---CCcccHHHHHHHh
Confidence 888752 1 259999999999864 566666676665432 3456677788999
Q ss_pred cc-----ceeecccccccccC-CCCCCcc-cccCCCceEEEccCCCCCcccccc-----------------cccHHHHHH
Q 005683 612 YN-----LTHPLEKSWHVLGL-GYNPSVD-RSEIENAAVVHYNGNMKPWLELAM-----------------TKYRSYWTK 667 (683)
Q Consensus 612 ~g-----~i~~Ld~~WN~l~l-gy~~~i~-~~~i~na~IIHY~G~~KPW~~~~~-----------------~~y~~lW~k 667 (683)
.+ .++.||.+||++.. .|..... ....++++||||+|..|||...+. ..+-..||.
T Consensus 173 ~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~ 252 (263)
T 3u2u_A 173 SSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWN 252 (263)
T ss_dssp TTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSEEETTTTEEECCSSCGGGSSTHHHHHHHH
T ss_pred ccccccCeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCCCCCCCCCCcccccCCCcchhHHHHHHHHHH
Confidence 87 78999999999852 2321100 122468999999999999998542 245678888
Q ss_pred HHh
Q 005683 668 YIK 670 (683)
Q Consensus 668 Y~~ 670 (683)
.+.
T Consensus 253 ~~~ 255 (263)
T 3u2u_A 253 IFT 255 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 5
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=55.26 E-value=13 Score=29.08 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=35.0
Q ss_pred hhhHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHHh
Q 005683 228 MRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (683)
Q Consensus 228 ~~dq~~~a~~y~~~a~~~~~~~~~~el~~~i~e~~~~l 265 (683)
|..|+++-+.|+.-|+..+...=+.-|..+++|+++-+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999997654
No 6
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=49.91 E-value=17 Score=28.69 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=35.1
Q ss_pred HhhhHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHHh
Q 005683 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRAL 265 (683)
Q Consensus 227 ~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~i~e~~~~l 265 (683)
=|..|+++-+.|+.-|+..+..+=+.=|..+++|+++-+
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999987654
No 7
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=48.11 E-value=17 Score=30.32 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=36.7
Q ss_pred HHhhhHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHHhc
Q 005683 226 RLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALG 266 (683)
Q Consensus 226 ~~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~i~e~~~~l~ 266 (683)
.=|.+|+++-+.|+.-||..+..+=+.=|..+++|+++-+.
T Consensus 23 dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999987553
No 8
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=46.72 E-value=20 Score=29.10 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=35.9
Q ss_pred HhhhHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHHhc
Q 005683 227 LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALG 266 (683)
Q Consensus 227 ~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~i~e~~~~l~ 266 (683)
-|..|+++-++|+--|+..+..+=+.=|..+++|++.-+.
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~ 52 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLA 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999877553
No 9
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=25.66 E-value=31 Score=25.07 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=12.3
Q ss_pred hhHHHHHHhhhhhhhhccc
Q 005683 25 VLVIFFSVLAPLIFFVGRG 43 (683)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~ 43 (683)
++++.+.+..|||+|+-|.
T Consensus 13 ~LLviV~LgV~LI~f~~kA 31 (35)
T 2lk9_A 13 VLLIIVILGVPLIIFTIKK 31 (35)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcchheEEeeec
Confidence 4455567889999998765
No 10
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=21.30 E-value=6.3e+02 Score=26.25 Aligned_cols=121 Identities=13% Similarity=0.089 Sum_probs=66.9
Q ss_pred hhcccCCCCeEEEEecCEEEeccchHHhccCCCCCeEEEeeccCc--ccc--ccccccCcCCccccc--CCCCCCcceee
Q 005683 494 LPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGE--SFH--RFDKYLNFTNPHIAR--SFDPNACGWAY 567 (683)
Q Consensus 494 IPeLLP~ldKVLYLDaDvIV~~DLseLw~iDL~gkviGAV~Dc~~--~f~--ry~~yLnfs~P~i~~--~f~~~~~YFNS 567 (683)
..+++.++|-+.++|+|+++++++..= .| |..+|...--.- ... .|.. +|.-.. .++.+..|+.+
T Consensus 132 ~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~~fpYER-----rp~S~AyIp~~eGdfYY~G 202 (289)
T 1o7q_A 132 VAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPNDFTYER-----RKESAAYIPFGEGDFYYHA 202 (289)
T ss_dssp HHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGGGSCCCC-----CTTSTTCCCTTCCSCCEEE
T ss_pred HHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCCCCCCCCCC-----CcCceeeecCCCCCEEEEc
Confidence 355677899999999999999988652 22 456666543211 000 1111 121111 24457789998
Q ss_pred cceeccchHHHHhhHHHHHHHHHH---HcCCCccccCCC-cchhhhhhccceeeccccccccc
Q 005683 568 GMNMFDLKEWKKKDITGIYHKWQN---MNEDRTLWKLGT-LPPGLITFYNLTHPLEKSWHVLG 626 (683)
Q Consensus 568 GVmLiNL~kWRk~nit~k~~~~l~---~~~d~~l~~~gd-Lp~~nl~F~g~i~~Ld~~WN~l~ 626 (683)
|++==-..+.- ++++.|++-+. .+.-...|++-. |+ -.+.....++.|++.|....
T Consensus 203 a~fGGt~~~vl--~l~~~c~~~i~~D~~n~I~A~wHDESHLN-KYf~~~KPtKvLSPEY~wd~ 262 (289)
T 1o7q_A 203 AIFGGTPTQVL--NITQECFKGILKDKKNDIEAQWHDESHLN-KYFLLNKPTKILSPEYCWDY 262 (289)
T ss_dssp EEEEECHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHHHHHH-HHHHHSCCSEEECGGGSBCG
T ss_pred eeeCCcHHHHH--HHHHHHHHHHHHHHhCCeEEEecchhhhh-HHHhhcCCCEEECHHHCCCc
Confidence 88733333322 35666665443 233334676533 22 11233456788999888764
Done!