Query 005685
Match_columns 683
No_of_seqs 343 out of 3353
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 12:12:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01862 putative voltage-gate 100.0 1.3E-70 2.7E-75 630.4 50.6 489 89-657 23-523 (574)
2 PRK01610 putative voltage-gate 100.0 1.6E-61 3.4E-66 532.1 41.5 401 89-525 3-416 (418)
3 KOG0475 Cl- channel CLC-3 and 100.0 1.1E-62 2.3E-67 530.7 25.6 424 165-640 153-608 (696)
4 KOG0474 Cl- channel CLC-7 and 100.0 6.4E-62 1.4E-66 522.7 29.3 489 88-644 85-648 (762)
5 cd03684 ClC_3_like ClC-3-like 100.0 2.8E-59 6.1E-64 518.5 38.2 403 98-531 1-445 (445)
6 cd01033 ClC_like Putative ClC 100.0 1.2E-58 2.6E-63 505.8 38.7 378 98-511 1-387 (388)
7 KOG0476 Cl- channel CLC-2 and 100.0 4.3E-60 9.3E-65 516.5 20.0 497 80-641 88-648 (931)
8 cd01031 EriC ClC chloride chan 100.0 3.9E-56 8.5E-61 489.6 38.0 391 97-523 1-401 (402)
9 cd03685 ClC_6_like ClC-6-like 100.0 1.7E-55 3.6E-60 490.7 39.8 394 87-531 29-459 (466)
10 PRK05277 chloride channel prot 100.0 2.1E-55 4.5E-60 488.4 40.0 402 92-526 2-417 (438)
11 cd03683 ClC_1_like ClC-1-like 100.0 1.2E-55 2.6E-60 487.4 36.4 392 92-531 3-424 (426)
12 cd01034 EriC_like ClC chloride 100.0 2.1E-55 4.6E-60 481.4 38.0 373 102-512 1-385 (390)
13 COG0038 EriC Chloride channel 100.0 4.1E-55 8.9E-60 483.8 39.4 357 142-529 65-434 (443)
14 cd01036 ClC_euk Chloride chann 100.0 1.4E-54 3.1E-59 477.8 35.3 371 98-511 1-411 (416)
15 PF00654 Voltage_CLC: Voltage 100.0 1.2E-54 2.7E-59 469.9 33.0 330 159-508 21-354 (355)
16 cd00400 Voltage_gated_ClC CLC 100.0 2.7E-52 5.9E-57 456.8 38.0 374 98-504 1-383 (383)
17 PRK03655 putative ion channel 100.0 2E-51 4.4E-56 449.8 36.7 383 85-506 7-396 (414)
18 cd03682 ClC_sycA_like ClC sycA 100.0 1.1E-50 2.5E-55 442.1 38.8 360 94-508 2-372 (378)
19 PRK01862 putative voltage-gate 99.7 2.2E-16 4.7E-21 182.0 25.5 178 88-293 236-423 (574)
20 cd00400 Voltage_gated_ClC CLC 99.7 1.9E-15 4.2E-20 165.9 17.6 178 319-512 1-188 (383)
21 COG3448 CBS-domain-containing 99.6 3.1E-15 6.8E-20 150.2 14.1 172 457-638 109-300 (382)
22 cd01031 EriC ClC chloride chan 99.6 3.8E-15 8.3E-20 164.4 16.4 178 318-511 1-188 (402)
23 PRK05277 chloride channel prot 99.6 1.2E-14 2.7E-19 162.0 19.7 185 313-512 2-199 (438)
24 cd01034 EriC_like ClC chloride 99.6 5.3E-14 1.1E-18 154.7 18.0 183 86-299 197-389 (390)
25 cd01033 ClC_like Putative ClC 99.5 5.7E-14 1.2E-18 154.1 14.6 177 88-292 202-386 (388)
26 cd03682 ClC_sycA_like ClC sycA 99.5 3.4E-13 7.3E-18 147.7 19.3 176 315-511 2-181 (378)
27 cd03685 ClC_6_like ClC-6-like 99.5 3.8E-13 8.1E-18 150.8 15.3 193 310-510 31-243 (466)
28 PRK01610 putative voltage-gate 99.5 1.8E-12 3.8E-17 143.5 19.4 183 311-511 4-201 (418)
29 COG0038 EriC Chloride channel 99.4 4.9E-12 1.1E-16 140.8 17.0 182 315-512 26-217 (443)
30 cd03683 ClC_1_like ClC-1-like 99.4 3.7E-12 7.9E-17 141.5 15.2 191 313-511 3-204 (426)
31 cd01036 ClC_euk Chloride chann 99.4 3.1E-12 6.7E-17 141.7 13.8 187 319-512 1-204 (416)
32 cd03684 ClC_3_like ClC-3-like 99.3 1.8E-11 3.8E-16 136.7 17.3 181 319-512 1-185 (445)
33 PRK03655 putative ion channel 99.3 3.2E-10 6.9E-15 125.1 20.5 180 310-511 11-204 (414)
34 PF00654 Voltage_CLC: Voltage 99.1 1E-09 2.3E-14 119.3 13.3 140 357-512 1-145 (355)
35 PF00571 CBS: CBS domain CBS d 98.8 1E-08 2.2E-13 80.5 6.5 55 585-639 1-55 (57)
36 COG2239 MgtE Mg/Co/Ni transpor 98.6 2.3E-08 4.9E-13 110.4 5.0 103 579-681 192-297 (451)
37 TIGR00400 mgtE Mg2+ transporte 98.5 1.3E-07 2.7E-12 106.2 6.0 101 581-681 193-298 (449)
38 COG2524 Predicted transcriptio 98.4 2.5E-07 5.5E-12 92.4 5.8 80 579-659 168-247 (294)
39 cd04619 CBS_pair_6 The CBS dom 98.3 1.6E-06 3.4E-11 77.9 6.4 57 581-637 57-113 (114)
40 KOG0474 Cl- channel CLC-7 and 98.2 4E-06 8.7E-11 92.9 8.0 190 311-508 87-301 (762)
41 cd04603 CBS_pair_KefB_assoc Th 98.1 3.3E-06 7.2E-11 75.4 5.8 55 583-637 56-110 (111)
42 COG3448 CBS-domain-containing 98.1 4E-06 8.8E-11 85.3 6.2 66 579-644 311-376 (382)
43 cd04597 CBS_pair_DRTGG_assoc2 98.1 6.8E-06 1.5E-10 74.1 5.9 54 584-637 59-112 (113)
44 COG2524 Predicted transcriptio 98.0 8.6E-06 1.9E-10 81.7 6.7 60 580-639 231-290 (294)
45 PRK10892 D-arabinose 5-phospha 98.0 8.3E-06 1.8E-10 87.8 6.9 75 584-658 203-281 (326)
46 COG3620 Predicted transcriptio 98.0 1.5E-05 3.2E-10 74.4 6.3 75 581-656 63-140 (187)
47 cd04630 CBS_pair_17 The CBS do 98.0 1.8E-05 3.9E-10 70.7 6.8 56 581-637 58-113 (114)
48 cd04623 CBS_pair_10 The CBS do 97.9 2.1E-05 4.4E-10 69.7 6.4 55 582-637 58-112 (113)
49 COG4109 Predicted transcriptio 97.9 2.5E-05 5.5E-10 81.5 7.5 63 579-641 245-307 (432)
50 cd04625 CBS_pair_12 The CBS do 97.9 2.7E-05 5.8E-10 69.1 6.9 54 583-637 58-111 (112)
51 cd04639 CBS_pair_26 The CBS do 97.9 2.7E-05 5.9E-10 69.0 6.6 55 583-637 56-110 (111)
52 PRK11543 gutQ D-arabinose 5-ph 97.9 2.6E-05 5.7E-10 83.7 7.6 72 585-656 199-273 (321)
53 COG3620 Predicted transcriptio 97.9 2.7E-05 5.8E-10 72.7 6.4 85 553-640 99-184 (187)
54 cd04620 CBS_pair_7 The CBS dom 97.9 2E-05 4.3E-10 70.4 5.5 56 582-637 57-114 (115)
55 PRK11543 gutQ D-arabinose 5-ph 97.9 3.6E-05 7.9E-10 82.6 8.2 57 582-638 262-318 (321)
56 KOG0476 Cl- channel CLC-2 and 97.9 6.5E-05 1.4E-09 85.1 10.2 174 310-490 94-276 (931)
57 cd04593 CBS_pair_EriC_assoc_ba 97.8 3.3E-05 7.2E-10 69.0 6.5 55 583-637 58-114 (115)
58 cd04607 CBS_pair_NTP_transfera 97.8 3E-05 6.5E-10 69.1 6.0 55 583-637 58-112 (113)
59 cd04617 CBS_pair_4 The CBS dom 97.8 2.6E-05 5.6E-10 70.4 5.5 57 581-637 56-117 (118)
60 cd04627 CBS_pair_14 The CBS do 97.8 3.8E-05 8.2E-10 69.7 6.5 53 585-637 70-122 (123)
61 cd04600 CBS_pair_HPP_assoc Thi 97.8 2.8E-05 6E-10 70.4 5.5 56 582-637 68-123 (124)
62 cd04596 CBS_pair_DRTGG_assoc T 97.8 3.6E-05 7.9E-10 68.0 6.1 55 583-637 53-107 (108)
63 cd04587 CBS_pair_CAP-ED_DUF294 97.8 3.9E-05 8.4E-10 68.1 5.8 55 583-637 58-112 (113)
64 cd04608 CBS_pair_PALP_assoc Th 97.8 6.1E-05 1.3E-09 68.9 7.1 68 591-658 2-71 (124)
65 TIGR01137 cysta_beta cystathio 97.8 4.9E-05 1.1E-09 85.6 7.5 72 585-656 337-410 (454)
66 cd04641 CBS_pair_28 The CBS do 97.8 4.9E-05 1.1E-09 68.6 6.1 53 585-637 67-119 (120)
67 cd04610 CBS_pair_ParBc_assoc T 97.7 4.9E-05 1.1E-09 66.7 5.8 54 584-637 53-106 (107)
68 cd04802 CBS_pair_3 The CBS dom 97.7 7.8E-05 1.7E-09 66.1 7.1 56 581-637 56-111 (112)
69 cd04606 CBS_pair_Mg_transporte 97.7 6.1E-05 1.3E-09 66.7 6.3 56 583-638 53-108 (109)
70 cd04615 CBS_pair_2 The CBS dom 97.7 6E-05 1.3E-09 67.0 6.2 55 583-637 58-112 (113)
71 cd04585 CBS_pair_ACT_assoc2 Th 97.7 5E-05 1.1E-09 68.1 5.7 55 583-637 67-121 (122)
72 cd04604 CBS_pair_KpsF_GutQ_ass 97.7 7.9E-05 1.7E-09 66.1 6.8 55 583-637 59-113 (114)
73 cd04583 CBS_pair_ABC_OpuCA_ass 97.7 6.4E-05 1.4E-09 66.1 6.1 54 584-637 55-108 (109)
74 PRK07807 inosine 5-monophospha 97.7 7.7E-05 1.7E-09 83.9 7.8 69 585-657 91-159 (479)
75 TIGR00393 kpsF KpsF/GutQ famil 97.7 5.9E-05 1.3E-09 78.7 6.5 71 585-655 157-229 (268)
76 cd04602 CBS_pair_IMPDH_2 This 97.7 6.7E-05 1.5E-09 67.1 5.9 54 584-637 58-113 (114)
77 cd04639 CBS_pair_26 The CBS do 97.7 9.9E-05 2.1E-09 65.3 6.9 65 592-656 2-66 (111)
78 cd04635 CBS_pair_22 The CBS do 97.7 5.8E-05 1.3E-09 68.0 5.5 55 583-637 67-121 (122)
79 cd04631 CBS_pair_18 The CBS do 97.7 5.6E-05 1.2E-09 68.5 5.4 55 583-637 70-124 (125)
80 cd04803 CBS_pair_15 The CBS do 97.7 6.7E-05 1.4E-09 67.7 5.9 56 582-637 66-121 (122)
81 cd04622 CBS_pair_9 The CBS dom 97.7 8.6E-05 1.9E-09 65.9 6.5 54 584-637 59-112 (113)
82 cd04611 CBS_pair_PAS_GGDEF_DUF 97.7 7.6E-05 1.7E-09 65.9 6.1 57 581-637 54-110 (111)
83 cd04641 CBS_pair_28 The CBS do 97.7 0.00011 2.4E-09 66.3 7.3 52 591-642 1-52 (120)
84 cd04595 CBS_pair_DHH_polyA_Pol 97.7 8.6E-05 1.9E-09 65.7 6.3 56 581-637 54-109 (110)
85 cd04629 CBS_pair_16 The CBS do 97.7 6.2E-05 1.3E-09 66.9 5.2 55 582-637 59-113 (114)
86 cd04601 CBS_pair_IMPDH This cd 97.7 8.2E-05 1.8E-09 65.6 5.8 55 583-637 54-109 (110)
87 cd04603 CBS_pair_KefB_assoc Th 97.6 0.00015 3.2E-09 64.6 7.5 64 592-655 2-65 (111)
88 PRK15094 magnesium/cobalt effl 97.6 0.00018 3.8E-09 76.2 9.2 63 578-640 62-127 (292)
89 cd04608 CBS_pair_PALP_assoc Th 97.6 2.8E-05 6E-10 71.2 2.6 58 581-638 57-123 (124)
90 cd04582 CBS_pair_ABC_OpuCA_ass 97.6 0.00011 2.5E-09 64.4 6.4 53 585-637 53-105 (106)
91 cd04619 CBS_pair_6 The CBS dom 97.6 0.00015 3.3E-09 64.8 7.3 48 593-640 3-50 (114)
92 cd04640 CBS_pair_27 The CBS do 97.6 7.3E-05 1.6E-09 68.3 5.3 57 581-637 62-125 (126)
93 cd04589 CBS_pair_CAP-ED_DUF294 97.6 9.2E-05 2E-09 65.6 5.8 56 581-637 55-110 (111)
94 cd04586 CBS_pair_BON_assoc Thi 97.6 6.6E-05 1.4E-09 69.4 4.9 54 583-637 81-134 (135)
95 cd04621 CBS_pair_8 The CBS dom 97.6 0.00013 2.8E-09 67.8 6.8 55 582-637 80-134 (135)
96 cd04618 CBS_pair_5 The CBS dom 97.6 8.1E-05 1.8E-09 65.3 5.1 45 593-637 52-97 (98)
97 cd04643 CBS_pair_30 The CBS do 97.6 8.6E-05 1.9E-09 66.2 5.3 53 583-637 63-115 (116)
98 cd04588 CBS_pair_CAP-ED_DUF294 97.6 0.00011 2.5E-09 64.8 6.0 55 583-637 55-109 (110)
99 cd04613 CBS_pair_SpoIVFB_EriC_ 97.6 0.0001 2.2E-09 65.3 5.7 55 583-637 58-113 (114)
100 PRK14869 putative manganese-de 97.6 0.00012 2.5E-09 84.6 7.6 60 584-643 69-128 (546)
101 cd04624 CBS_pair_11 The CBS do 97.6 0.00022 4.8E-09 63.2 7.6 63 592-654 2-65 (112)
102 PRK07107 inosine 5-monophospha 97.6 0.0001 2.2E-09 83.4 6.7 58 581-638 159-218 (502)
103 cd04605 CBS_pair_MET2_assoc Th 97.6 0.00014 3E-09 64.3 6.2 53 585-637 57-109 (110)
104 PRK07807 inosine 5-monophospha 97.6 0.00013 2.7E-09 82.2 7.3 58 583-640 148-205 (479)
105 cd04599 CBS_pair_GGDEF_assoc2 97.6 0.00015 3.2E-09 63.4 6.3 52 584-636 52-103 (105)
106 cd04626 CBS_pair_13 The CBS do 97.6 0.00012 2.7E-09 64.8 5.9 54 583-637 57-110 (111)
107 cd04613 CBS_pair_SpoIVFB_EriC_ 97.6 0.00018 3.9E-09 63.7 6.9 67 591-657 1-69 (114)
108 PRK10892 D-arabinose 5-phospha 97.6 0.00012 2.7E-09 78.7 6.8 58 580-638 266-323 (326)
109 cd04801 CBS_pair_M50_like This 97.6 8.7E-05 1.9E-09 66.2 4.8 55 583-637 57-113 (114)
110 cd04637 CBS_pair_24 The CBS do 97.6 0.00011 2.4E-09 66.3 5.4 54 585-638 69-122 (122)
111 cd04618 CBS_pair_5 The CBS dom 97.6 0.00019 4.1E-09 62.9 6.7 48 592-639 2-50 (98)
112 cd04612 CBS_pair_SpoIVFB_EriC_ 97.6 0.00014 3E-09 64.2 5.8 54 584-637 57-110 (111)
113 cd04800 CBS_pair_CAP-ED_DUF294 97.5 0.00015 3.3E-09 64.1 6.1 54 583-637 57-110 (111)
114 cd04642 CBS_pair_29 The CBS do 97.5 0.00017 3.6E-09 65.8 6.5 53 585-637 73-125 (126)
115 cd04623 CBS_pair_10 The CBS do 97.5 0.00028 6.1E-09 62.3 7.7 50 592-641 2-51 (113)
116 cd04594 CBS_pair_EriC_assoc_ar 97.5 0.00016 3.4E-09 63.6 5.8 53 584-637 51-103 (104)
117 cd04636 CBS_pair_23 The CBS do 97.5 0.00015 3.4E-09 66.6 6.0 53 584-637 79-131 (132)
118 cd04633 CBS_pair_20 The CBS do 97.5 0.00012 2.7E-09 65.7 5.2 54 583-637 67-120 (121)
119 cd04624 CBS_pair_11 The CBS do 97.5 0.00018 3.9E-09 63.8 6.1 56 582-637 56-111 (112)
120 TIGR01303 IMP_DH_rel_1 IMP deh 97.5 0.00017 3.7E-09 81.1 7.2 58 583-640 146-203 (475)
121 cd04605 CBS_pair_MET2_assoc Th 97.5 0.00032 7E-09 61.9 7.7 50 591-640 2-51 (110)
122 cd04590 CBS_pair_CorC_HlyC_ass 97.5 0.00018 3.9E-09 63.7 5.8 53 584-637 58-110 (111)
123 cd04630 CBS_pair_17 The CBS do 97.5 0.00035 7.6E-09 62.3 7.6 49 591-639 1-50 (114)
124 cd04593 CBS_pair_EriC_assoc_ba 97.5 0.00037 8E-09 62.2 7.8 50 592-641 2-51 (115)
125 TIGR03520 GldE gliding motilit 97.5 0.00022 4.7E-09 79.2 7.5 65 576-640 184-251 (408)
126 PLN02274 inosine-5'-monophosph 97.5 0.00019 4.2E-09 81.3 7.2 60 582-641 162-223 (505)
127 cd04600 CBS_pair_HPP_assoc Thi 97.5 0.00035 7.5E-09 63.1 7.6 51 590-640 1-51 (124)
128 cd04801 CBS_pair_M50_like This 97.5 0.0003 6.5E-09 62.7 6.9 63 591-653 1-64 (114)
129 COG0517 FOG: CBS domain [Gener 97.5 0.00024 5.1E-09 63.3 6.3 52 584-635 63-116 (117)
130 PRK14869 putative manganese-de 97.5 0.00018 3.9E-09 83.0 6.9 58 583-640 246-304 (546)
131 cd04643 CBS_pair_30 The CBS do 97.5 0.00036 7.7E-09 62.2 7.3 49 592-640 2-50 (116)
132 cd04592 CBS_pair_EriC_assoc_eu 97.5 0.00036 7.8E-09 65.0 7.5 51 591-641 1-51 (133)
133 smart00116 CBS Domain in cysta 97.5 0.00035 7.5E-09 51.1 6.0 47 593-639 2-48 (49)
134 cd04632 CBS_pair_19 The CBS do 97.5 0.00018 3.8E-09 65.7 5.3 55 583-637 71-127 (128)
135 cd04588 CBS_pair_CAP-ED_DUF294 97.4 0.00046 1E-08 60.9 7.7 61 591-652 1-61 (110)
136 PRK05567 inosine 5'-monophosph 97.4 0.00038 8.3E-09 79.0 8.9 54 585-638 89-142 (486)
137 cd04584 CBS_pair_ACT_assoc Thi 97.4 0.00027 5.8E-09 63.5 6.1 55 582-637 66-120 (121)
138 cd04632 CBS_pair_19 The CBS do 97.4 0.00042 9E-09 63.2 7.4 48 592-639 2-49 (128)
139 cd04615 CBS_pair_2 The CBS dom 97.4 0.00046 1E-08 61.2 7.4 65 592-656 2-68 (113)
140 cd04626 CBS_pair_13 The CBS do 97.4 0.00044 9.5E-09 61.2 7.0 49 592-640 2-50 (111)
141 cd04595 CBS_pair_DHH_polyA_Pol 97.4 0.00056 1.2E-08 60.4 7.6 62 591-653 2-63 (110)
142 cd04614 CBS_pair_1 The CBS dom 97.4 0.0003 6.6E-09 61.2 5.6 45 593-637 51-95 (96)
143 cd04611 CBS_pair_PAS_GGDEF_DUF 97.4 0.00068 1.5E-08 59.7 7.8 62 592-654 2-64 (111)
144 cd04591 CBS_pair_EriC_assoc_eu 97.4 0.00034 7.4E-09 61.9 5.8 49 588-637 56-104 (105)
145 cd04614 CBS_pair_1 The CBS dom 97.3 0.00046 1E-08 60.0 6.4 48 591-638 1-48 (96)
146 cd04617 CBS_pair_4 The CBS dom 97.3 0.00067 1.5E-08 61.0 7.7 49 592-640 2-50 (118)
147 TIGR01302 IMP_dehydrog inosine 97.3 0.00061 1.3E-08 76.6 8.9 66 585-653 82-150 (450)
148 cd04631 CBS_pair_18 The CBS do 97.3 0.00051 1.1E-08 62.1 6.8 51 591-641 1-52 (125)
149 cd04629 CBS_pair_16 The CBS do 97.3 0.00052 1.1E-08 60.9 6.5 49 591-639 1-49 (114)
150 cd04609 CBS_pair_PALP_assoc2 T 97.3 0.00071 1.5E-08 59.4 7.1 49 592-641 2-50 (110)
151 cd04609 CBS_pair_PALP_assoc2 T 97.3 0.00036 7.9E-09 61.3 5.1 54 583-638 57-110 (110)
152 cd04636 CBS_pair_23 The CBS do 97.3 0.00058 1.3E-08 62.7 6.7 50 592-641 2-51 (132)
153 cd04803 CBS_pair_15 The CBS do 97.3 0.00062 1.3E-08 61.2 6.8 49 592-640 2-50 (122)
154 cd04598 CBS_pair_GGDEF_assoc T 97.3 0.0005 1.1E-08 61.6 6.1 55 583-637 61-118 (119)
155 cd04598 CBS_pair_GGDEF_assoc T 97.3 0.00077 1.7E-08 60.3 7.2 49 591-640 1-50 (119)
156 cd04612 CBS_pair_SpoIVFB_EriC_ 97.3 0.0009 1.9E-08 58.9 7.3 50 591-641 1-50 (111)
157 cd04621 CBS_pair_8 The CBS dom 97.2 0.00071 1.5E-08 62.9 6.8 49 592-640 2-50 (135)
158 cd04634 CBS_pair_21 The CBS do 97.2 0.00072 1.6E-08 63.3 7.0 50 591-641 1-50 (143)
159 cd04586 CBS_pair_BON_assoc Thi 97.2 0.0007 1.5E-08 62.5 6.5 50 590-639 1-50 (135)
160 TIGR00400 mgtE Mg2+ transporte 97.2 0.00084 1.8E-08 75.5 8.3 74 579-656 127-205 (449)
161 PTZ00314 inosine-5'-monophosph 97.2 0.00045 9.6E-09 78.3 5.7 58 582-639 158-217 (495)
162 cd02205 CBS_pair The CBS domai 97.2 0.00063 1.4E-08 59.3 5.4 53 585-637 60-112 (113)
163 cd04589 CBS_pair_CAP-ED_DUF294 97.2 0.0014 3E-08 58.0 7.7 48 592-640 2-49 (111)
164 cd04607 CBS_pair_NTP_transfera 97.2 0.0012 2.6E-08 58.6 7.2 63 592-654 3-66 (113)
165 COG4109 Predicted transcriptio 97.1 0.00054 1.2E-08 71.8 5.3 71 583-657 188-260 (432)
166 COG2905 Predicted signal-trans 97.1 0.00051 1.1E-08 76.3 5.3 74 584-657 150-225 (610)
167 cd04638 CBS_pair_25 The CBS do 97.1 0.001 2.2E-08 58.4 6.3 53 584-637 53-105 (106)
168 cd04604 CBS_pair_KpsF_GutQ_ass 97.1 0.0012 2.5E-08 58.5 6.7 66 592-657 3-70 (114)
169 cd04583 CBS_pair_ABC_OpuCA_ass 97.1 0.0018 3.9E-08 56.8 7.8 49 591-639 2-50 (109)
170 cd04622 CBS_pair_9 The CBS dom 97.1 0.0017 3.8E-08 57.3 7.8 46 591-637 1-46 (113)
171 PTZ00314 inosine-5'-monophosph 97.1 0.0013 2.8E-08 74.7 8.4 67 585-654 98-167 (495)
172 cd04634 CBS_pair_21 The CBS do 97.1 0.001 2.3E-08 62.2 6.3 54 583-637 89-142 (143)
173 cd04585 CBS_pair_ACT_assoc2 Th 97.1 0.0016 3.5E-08 58.2 7.3 48 592-640 2-49 (122)
174 cd04596 CBS_pair_DRTGG_assoc T 97.0 0.0013 2.8E-08 58.0 6.2 48 591-638 2-49 (108)
175 cd04642 CBS_pair_29 The CBS do 97.0 0.0011 2.5E-08 60.3 6.0 49 592-640 2-50 (126)
176 COG2905 Predicted signal-trans 97.0 0.0013 2.7E-08 73.2 7.2 78 562-641 194-271 (610)
177 cd04584 CBS_pair_ACT_assoc Thi 97.0 0.0014 3E-08 58.7 6.4 48 592-639 2-49 (121)
178 cd04582 CBS_pair_ABC_OpuCA_ass 97.0 0.0017 3.6E-08 56.8 6.7 48 591-638 1-48 (106)
179 cd04802 CBS_pair_3 The CBS dom 97.0 0.0025 5.5E-08 56.3 7.9 48 591-639 1-48 (112)
180 PLN02274 inosine-5'-monophosph 97.0 0.002 4.3E-08 73.2 8.8 67 586-655 103-172 (505)
181 TIGR01302 IMP_dehydrog inosine 97.0 0.001 2.2E-08 74.9 6.3 58 582-639 142-200 (450)
182 cd04633 CBS_pair_20 The CBS do 97.0 0.0021 4.6E-08 57.7 7.3 48 592-640 2-49 (121)
183 cd04800 CBS_pair_CAP-ED_DUF294 97.0 0.0025 5.4E-08 56.2 7.6 48 591-639 1-48 (111)
184 TIGR01303 IMP_DH_rel_1 IMP deh 97.0 0.0019 4.1E-08 72.8 8.3 68 585-657 90-157 (475)
185 cd04590 CBS_pair_CorC_HlyC_ass 97.0 0.0024 5.2E-08 56.3 7.2 50 592-641 2-52 (111)
186 cd02205 CBS_pair The CBS domai 97.0 0.0031 6.7E-08 54.8 7.8 52 592-643 2-53 (113)
187 cd04637 CBS_pair_24 The CBS do 97.0 0.0018 3.8E-08 58.3 6.3 48 592-640 2-49 (122)
188 PRK07107 inosine 5-monophospha 96.9 0.0018 4E-08 73.4 7.7 68 585-654 96-169 (502)
189 cd04627 CBS_pair_14 The CBS do 96.9 0.0027 5.8E-08 57.5 7.0 50 592-641 2-52 (123)
190 KOG0475 Cl- channel CLC-3 and 96.9 0.00086 1.9E-08 75.1 4.4 136 367-514 150-289 (696)
191 TIGR00393 kpsF KpsF/GutQ famil 96.9 0.0014 3E-08 68.3 5.7 51 581-631 218-268 (268)
192 COG0517 FOG: CBS domain [Gener 96.9 0.0048 1E-07 54.8 8.4 68 586-654 2-70 (117)
193 PRK15094 magnesium/cobalt effl 96.8 0.0021 4.6E-08 68.1 6.7 59 583-642 133-191 (292)
194 cd04635 CBS_pair_22 The CBS do 96.8 0.0022 4.8E-08 57.6 5.9 48 591-638 1-48 (122)
195 cd04640 CBS_pair_27 The CBS do 96.8 0.0032 6.9E-08 57.3 6.7 46 592-637 2-47 (126)
196 cd04587 CBS_pair_CAP-ED_DUF294 96.8 0.0053 1.2E-07 54.2 7.8 46 592-638 2-47 (113)
197 PRK05567 inosine 5'-monophosph 96.8 0.0023 4.9E-08 72.7 6.7 57 583-639 147-204 (486)
198 cd04620 CBS_pair_7 The CBS dom 96.7 0.0039 8.4E-08 55.4 6.7 49 592-641 2-51 (115)
199 cd04599 CBS_pair_GGDEF_assoc2 96.7 0.0039 8.5E-08 54.3 6.6 46 592-638 2-47 (105)
200 cd04625 CBS_pair_12 The CBS do 96.7 0.0053 1.1E-07 54.2 7.5 48 592-640 2-49 (112)
201 cd04601 CBS_pair_IMPDH This cd 96.7 0.0031 6.6E-08 55.4 5.7 48 591-638 2-49 (110)
202 cd04602 CBS_pair_IMPDH_2 This 96.7 0.0051 1.1E-07 54.8 7.1 48 591-638 2-52 (114)
203 PRK11573 hypothetical protein; 96.6 0.0069 1.5E-07 67.4 9.0 64 576-639 180-246 (413)
204 cd04591 CBS_pair_EriC_assoc_eu 96.6 0.0064 1.4E-07 53.7 7.1 49 592-640 3-54 (105)
205 TIGR03520 GldE gliding motilit 96.6 0.0047 1E-07 68.6 7.4 55 584-639 256-310 (408)
206 cd04594 CBS_pair_EriC_assoc_ar 96.5 0.0086 1.9E-07 52.4 7.4 44 594-638 4-47 (104)
207 TIGR01186 proV glycine betaine 96.5 0.0054 1.2E-07 67.0 6.9 57 584-641 303-359 (363)
208 TIGR01137 cysta_beta cystathio 96.4 0.006 1.3E-07 68.8 6.8 55 582-639 399-453 (454)
209 cd04610 CBS_pair_ParBc_assoc T 96.3 0.01 2.2E-07 51.8 6.7 47 591-638 2-48 (107)
210 cd04606 CBS_pair_Mg_transporte 96.3 0.0071 1.5E-07 53.3 5.5 42 596-637 2-48 (109)
211 COG1253 TlyC Hemolysins and re 96.2 0.026 5.5E-07 63.3 10.3 66 577-642 200-268 (429)
212 cd04638 CBS_pair_25 The CBS do 95.9 0.022 4.8E-07 49.7 6.8 47 592-638 2-48 (106)
213 PRK10070 glycine betaine trans 95.8 0.019 4E-07 63.6 6.9 59 584-643 338-396 (400)
214 COG2239 MgtE Mg/Co/Ni transpor 95.5 0.024 5.2E-07 63.2 6.6 61 578-638 127-192 (451)
215 KOG2550 IMP dehydrogenase/GMP 95.5 0.014 3.1E-07 62.5 4.3 56 583-638 171-226 (503)
216 COG4535 CorC Putative Mg2+ and 94.6 0.022 4.7E-07 57.0 2.4 63 581-643 65-130 (293)
217 COG4536 CorB Putative Mg2+ and 93.7 0.066 1.4E-06 57.2 4.1 66 578-643 195-263 (423)
218 cd04592 CBS_pair_EriC_assoc_eu 93.5 0.073 1.6E-06 49.4 3.7 36 588-623 83-118 (133)
219 KOG1764 5'-AMP-activated prote 93.0 0.27 5.9E-06 54.0 7.7 51 592-642 311-361 (381)
220 COG1253 TlyC Hemolysins and re 92.8 0.3 6.5E-06 54.8 7.8 50 592-641 280-329 (429)
221 PRK11573 hypothetical protein; 92.6 0.31 6.8E-06 54.3 7.5 53 586-639 258-310 (413)
222 TIGR03415 ABC_choXWV_ATP choli 91.3 0.4 8.7E-06 52.8 6.5 53 585-640 328-380 (382)
223 KOG2550 IMP dehydrogenase/GMP 90.3 0.26 5.6E-06 53.3 3.6 67 590-659 115-184 (503)
224 KOG1764 5'-AMP-activated prote 90.0 0.45 9.8E-06 52.3 5.5 52 592-643 238-289 (381)
225 COG4536 CorB Putative Mg2+ and 90.0 0.87 1.9E-05 49.0 7.2 48 591-638 275-322 (423)
226 COG4175 ProV ABC-type proline/ 83.6 2 4.3E-05 45.6 5.5 52 588-640 332-383 (386)
227 PRK10070 glycine betaine trans 82.5 3.1 6.8E-05 46.1 7.0 58 583-640 274-334 (400)
228 TIGR01186 proV glycine betaine 80.3 5.1 0.00011 43.9 7.6 53 588-640 247-299 (363)
229 PRK09765 PTS system 2-O-a-mann 79.0 38 0.00083 40.0 14.7 28 227-260 521-550 (631)
230 COG1125 OpuBA ABC-type proline 76.5 4.2 9.1E-05 42.0 5.0 57 582-638 248-308 (309)
231 COG4535 CorC Putative Mg2+ and 69.8 16 0.00035 37.1 7.2 54 585-639 135-188 (293)
232 PF04982 HPP: HPP family; Int 67.0 52 0.0011 30.0 9.5 22 492-513 92-113 (120)
233 PRK10478 putative PTS system f 56.7 1.9E+02 0.0042 31.6 13.1 27 227-259 242-270 (359)
234 PRK10490 sensor protein KdpD; 50.1 48 0.001 40.9 8.2 54 276-330 446-499 (895)
235 COG2205 KdpD Osmosensitive K+ 44.7 80 0.0017 38.0 8.3 77 246-329 419-495 (890)
236 TIGR01992 PTS-IIBC-Tre PTS sys 40.7 5.9E+02 0.013 28.9 16.9 42 210-259 351-392 (462)
237 PRK12438 hypothetical protein; 40.3 8.4E+02 0.018 30.5 18.6 17 107-123 32-48 (991)
238 PF01102 Glycophorin_A: Glycop 38.2 46 0.001 30.5 4.1 17 313-329 66-82 (122)
239 PF03699 UPF0182: Uncharacteri 35.5 9E+02 0.019 29.5 17.9 19 105-123 17-35 (774)
240 PF10766 DUF2592: Protein of u 33.7 1.2E+02 0.0025 22.0 4.5 29 143-171 9-37 (41)
241 TIGR01996 PTS-II-BC-sucr PTS s 33.6 7.5E+02 0.016 28.0 17.2 41 210-258 350-390 (461)
242 PRK11404 putative PTS system 33.2 7.9E+02 0.017 28.1 18.5 27 227-259 368-396 (482)
243 PF13493 DUF4118: Domain of un 28.6 91 0.002 27.0 4.4 50 278-327 49-100 (105)
244 TIGR02865 spore_II_E stage II 28.0 1.2E+03 0.025 28.5 18.4 29 310-338 113-141 (764)
245 PRK11677 hypothetical protein; 24.4 80 0.0017 29.5 3.3 21 88-108 3-23 (134)
246 PRK10712 PTS system fructose-s 24.3 1.2E+03 0.026 27.3 15.6 18 227-248 456-473 (563)
247 PRK01030 tetrahydromethanopter 23.5 8.5E+02 0.018 25.3 11.7 30 420-449 93-124 (264)
248 COG5336 Uncharacterized protei 23.4 1.2E+02 0.0026 27.1 4.0 36 210-245 56-91 (116)
249 PF06738 DUF1212: Protein of u 23.2 4.2E+02 0.0091 25.7 8.5 20 349-368 150-169 (193)
250 PF13807 GNVR: G-rich domain o 22.5 1E+02 0.0022 25.8 3.4 27 84-110 55-81 (82)
251 PF05198 IF3_N: Translation in 20.6 1.8E+02 0.004 24.2 4.4 30 614-643 12-41 (76)
No 1
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.3e-70 Score=630.39 Aligned_cols=489 Identities=27% Similarity=0.444 Sum_probs=403.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---------
Q 005685 89 ALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHG--------- 159 (683)
Q Consensus 89 ~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~g--------- 159 (683)
.+++.++++|+++|+++++|+.++++.++++|...+.. ... ....+|++.+++|++||+++|++..
T Consensus 23 ~~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~ 97 (574)
T PRK01862 23 TMLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSF----VEM-AKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKG 97 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH----HHH-hhcccHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 36789999999999999999999999999988643211 111 1124566678899999999998742
Q ss_pred -HHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCCHHHHHHHHHhh
Q 005685 160 -LLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAG 238 (683)
Q Consensus 160 -~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~G 238 (683)
.+++++.++... ..++.+..+.|++++++++++|+|+|||||+||+|+++|++++|+++.+++++|.+++||
T Consensus 98 g~~~~~~~~~~~~-------~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~~~~~~r~l~~~G 170 (574)
T PRK01862 98 GKTDYMEAVALGD-------GVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHFDPPRLRLLVACG 170 (574)
T ss_pred CcHHHHHHHHcCC-------CCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 233444443211 112334556799999999999999999999999999999999999998888888899999
Q ss_pred hhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHH
Q 005685 239 AASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLIL 318 (683)
Q Consensus 239 aaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~ill 318 (683)
+|||+||+||||++|++|++|+++++++.+. .++++++|++|+++++.++|+++.|.++.++.++..++++++++
T Consensus 171 ~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l 245 (574)
T PRK01862 171 AAAGITSAYNAPIAGAFFVAEIVLGSIAMES-----FGPLVVASVVANIVMREFAGYQPPYEMPVFPAVTGWEVLLFVAL 245 (574)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHhhhccHHH-----HHHHHHHHHHHHHHHHHHcCCCceeeCCCcCcCCHHHHHHHHHH
Confidence 9999999999999999999999988776654 45689999999999999999999999887776778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCCCCchHHHH
Q 005685 319 GMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLL 398 (683)
Q Consensus 319 Gil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~~~~~~~~L 398 (683)
|++||++|.+|++++.+++++++++ +.+++++++++|+++|++++++|+.+|+||+.+++++++. ..+..+
T Consensus 246 Gv~~G~~~~~f~~~~~~~~~~~~~~----~~~~~~~~~~~gl~~g~l~~~~p~~~g~G~~~i~~~~~~~-----~~~~~l 316 (574)
T PRK01862 246 GVLCGAAAPQFLRLLDASKNQFKRL----PVPLPVRLALGGLLVGVISVWVPEVWGNGYSVVNTILHAP-----WTWQAL 316 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCC-----chHHHH
Confidence 9999999999999999988877543 3455678899999999999999999999999998888543 234456
Q ss_pred HHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcchHH
Q 005685 399 TQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLT 478 (683)
Q Consensus 399 ~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Plt 478 (683)
+.++++|+++|++|+|+|+|||.|+|++++||++|+++|..+..+ +|.. ..+|..|+++||+|++++++|+|+|
T Consensus 317 ~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~----~~~~--~~~~~~~a~vGmaa~~aa~~~aPlt 390 (574)
T PRK01862 317 VAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHAL----WPGH--TSAPFAYAMVGMGAFLAGATQAPLM 390 (574)
T ss_pred HHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHh----CCCc--ccchHHHHHHHHHHHHHHHHccHHH
Confidence 678889999999999999999999999999999999999877643 3332 2357889999999999999999999
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhcCCCCCCCccchhhhHhhccCCccchhhhhhhc
Q 005685 479 SVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVEN 558 (683)
Q Consensus 479 ~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~yp~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 558 (683)
++++++|+|+++++++|+|+++++|+++++.+++ +++|+.+++.++.+.
T Consensus 391 ~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~---~~iy~~~~~~~~~~~---------------------------- 439 (574)
T PRK01862 391 AILMIFEMTLSYQVVLPLMVSCVVAYFTARALGT---TSMYEITLRRHQDEA---------------------------- 439 (574)
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHhccccc----------------------------
Confidence 9999999999999999999999999999998764 467887766654321
Q ss_pred cccchhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 559 AADSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 559 ~~~~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
+.+.+++++ ++|+|++++.+++++++++|+.+.|.+++.+.+||+|++++++|+|+.+|+++.
T Consensus 440 -------~~~~L~~~~----------V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~ 502 (574)
T PRK01862 440 -------ERERLRTTQ----------MRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSD 502 (574)
T ss_pred -------hhhHHhhCc----------HHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHH
Confidence 123456666 999999999999999999999999999999999999999999999999999986
Q ss_pred HhhccC--CCCcCCCCccccc
Q 005685 639 LSKLSS--DNSKGDSIASDVC 657 (683)
Q Consensus 639 ~~~~~~--~~~v~~~~~~~i~ 657 (683)
..++.. +.++.|.|.++..
T Consensus 503 l~~~~~~~~~~v~dim~~~~~ 523 (574)
T PRK01862 503 LLDKRDTTDKTAADYAHTPFP 523 (574)
T ss_pred hhcccccccchHHHhccCCCe
Confidence 433222 2345556654433
No 2
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.6e-61 Score=532.08 Aligned_cols=401 Identities=24% Similarity=0.412 Sum_probs=329.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------
Q 005685 89 ALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH---------- 158 (683)
Q Consensus 89 ~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~---------- 158 (683)
.++++++++|+++|+++++|+..+++++++++.....+ +....+...|| +.+++|++||+++|+++
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~~~~~ 78 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGS---LVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKFTQQR 78 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc---hhhcccccchH-HHHHHHHHHHHHHHHHHHHHccccccc
Confidence 34678899999999999999999999987655432211 11111122345 56789999999999863
Q ss_pred --HHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 005685 159 --GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVA 236 (683)
Q Consensus 159 --g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~r~~l~~ 236 (683)
|.++++++++.+ + .++.+..+.|++++++++++|+|+|||||++|+|+++|++++|+++. +++||.+++
T Consensus 79 ~~g~~~vi~av~~~------g--~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~~-~~~~r~li~ 149 (418)
T PRK01610 79 PHAPTDYMEALQTD------G--QFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTP-RQEWKLWIA 149 (418)
T ss_pred CCCcHHHHHHHHcC------C--CCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhCC-hHHHHHHHH
Confidence 234555666531 1 12334557899999999999999999999999999999999999994 556668999
Q ss_pred hhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCc-ccccccccCccccchHHHH
Q 005685 237 AGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQ-SAFTVPSYDLKSAAELPLY 315 (683)
Q Consensus 237 ~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~-~~f~~~~~~~~~~~~l~~~ 315 (683)
||+|||+||+||||++|++|++|+++++++.+. ..+++++|++++.+++.++|.+ +.|.++.+...++.+++++
T Consensus 150 ~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~-----~~p~~ias~~a~~v~~~~~g~~~~~~~i~~~~~~~~~~l~~~ 224 (418)
T PRK01610 150 CGAAAGMASAYHAPLAGSLFIAEILFGTLMLAS-----LGPVVISAVVALLTTNLLNGSDALLYNVQLSVTVQARDYALI 224 (418)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHcCCCCCeeecCCcCCCCHHHHHHH
Confidence 999999999999999999999999988765543 4568999999999999988754 6688886666678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCCCCchH
Q 005685 316 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGI 395 (683)
Q Consensus 316 illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~~~~~~ 395 (683)
+++|++||++|.+|++...+.+++++++ +.++++++.++|+++|++++++|+++|+||+.++.+++.. +..
T Consensus 225 i~lGii~Gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~lggli~g~l~~~~p~~~G~G~~~i~~~~~~~-----~~~ 295 (418)
T PRK01610 225 ISTGLLAGLCGPLLLTLMNASHRGFVSL----KLAPPWQLALGGLIVGLLSLFTPAVWGNGYSVVQSFLTAP-----PLL 295 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc----ccchhHHHHHHHHHHHHHHHHhhHHhCCcHHHHHHHHcCC-----hhH
Confidence 9999999999999999999888877543 3456788999999999999999999999999988777432 334
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcc
Q 005685 396 WLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSV 475 (683)
Q Consensus 396 ~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~ 475 (683)
..++.+++.|+++|++|+|+|.+||.|.|++++||++|.++|..+..+ +|.. ..++..|+++||+|++++++|+
T Consensus 296 ~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~----~~~~--~~~~~~~a~vGmaA~laa~~~a 369 (418)
T PRK01610 296 MLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLW----LPDG--EEITLLLGLTGMATLLAATTHA 369 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh----CCCc--ccchHHHHHHHHHHHHHHHHcc
Confidence 556667899999999999999999999999999999999999876543 3432 1347899999999999999999
Q ss_pred hHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhh
Q 005685 476 PLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLA 525 (683)
Q Consensus 476 Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~ 525 (683)
|+|++++++|+||+++.++|+|+++++|+++++.+.+ +++|+.++..
T Consensus 370 Pltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~---~siy~~~~~~ 416 (418)
T PRK01610 370 PIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRR---DSIYRQHTAE 416 (418)
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCC---CCchHHHHhc
Confidence 9999999999999999999999999999999998754 4677776543
No 3
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-62 Score=530.69 Aligned_cols=424 Identities=26% Similarity=0.341 Sum_probs=341.0
Q ss_pred HhhhcCCcccccCc-------ccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhc---CCHHHHHHH
Q 005685 165 NQIKQSSSLDRQGF-------DLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME---NNRERKIAL 234 (683)
Q Consensus 165 ~~i~~~~~~~~~g~-------~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~---~~~~~r~~l 234 (683)
+.-.++++++.+++ .|...+++..|.++..++++||+|+|||||+||++.+||+.++++|+ .+..++|++
T Consensus 153 P~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~rei 232 (696)
T KOG0475|consen 153 PYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREI 232 (696)
T ss_pred hhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHH
Confidence 44446666666542 24556788999999999999999999999999999999999999986 466677889
Q ss_pred HHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhh---cCCcccccccccC-ccccc
Q 005685 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL---LGTQSAFTVPSYD-LKSAA 310 (683)
Q Consensus 235 ~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l---~g~~~~f~~~~~~-~~~~~ 310 (683)
++|++|||+|++|||||||++|++|++..++..+ +.|..++++.+|.++.+.+ .+.++.+..+.|+ .|++.
T Consensus 233 lsAaaAaGvavaFgAPIGGVlFslEev~~~fp~k-----tlw~sff~aLsAv~~L~~i~pf~~~~~vLf~V~Y~~~W~~~ 307 (696)
T KOG0475|consen 233 LSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLK-----TLWRSFFCALSAVTALRSINPFGNSRLVLFYVDYDRPWSLF 307 (696)
T ss_pred HHHHhhccchhhcCCccceeeeehhhhhhcCCcc-----chHHHHHHHHHHHHHHeeecccCCCceEEEEEeccCCcccc
Confidence 9999999999999999999999999998544433 3567888888888888865 2334444445565 46899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCC
Q 005685 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTA 390 (683)
Q Consensus 311 ~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~ 390 (683)
|+++|+++|++||+.|.+|+|++.++.+.++.. +...++++.+.+.+++++++++..|++..+++..++++++.....
T Consensus 308 EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~ 385 (696)
T KOG0475|consen 308 ELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPS 385 (696)
T ss_pred cchHHHHHHHhhhHHHHHHHHHHHHHHhccchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCc
Confidence 999999999999999999999999998877654 234455667788899999999999999999999999888753321
Q ss_pred CCc---------hHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCC----Cccccch
Q 005685 391 SAP---------GIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPG----NVAVAEP 457 (683)
Q Consensus 391 ~~~---------~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~----~~~~~~~ 457 (683)
+.. ..|.|+...++|+++|..|+|+++|+|+|+||+.+||+.|+++|.++-.+++. |+ ..+++.|
T Consensus 386 ~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~--~~~~~fg~~ci~P 463 (696)
T KOG0475|consen 386 SSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQN--PDFNLFGLSCATP 463 (696)
T ss_pred ccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcC--CCccccchhhcCc
Confidence 111 25788889999999999999999999999999999999999999777655542 21 2357889
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhcCCCCCCCccch
Q 005685 458 QAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDK 537 (683)
Q Consensus 458 ~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~yp~~~~~~~~ 537 (683)
+.|+++||||.++|+||+|+|.+||+||+||++++++|+|+++++++|+++.+.+ .++||.+++.+|||++..++..
T Consensus 464 g~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk---~gIyda~I~~ng~P~l~~k~e~ 540 (696)
T KOG0475|consen 464 GAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGK---TGIYDAHIELNGYPFLDSKSEF 540 (696)
T ss_pred hHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhcccc---chHHHHHHHhcCCCCccccccc
Confidence 9999999999999999999999999999999999999999999999999998875 3599999999999987321110
Q ss_pred hhhHhhccCCccchhhhhhhccccchhHHHHHHHHHHhhhcCCccccccccccc--CceeecC-CCCHHHHHHHHHhCCC
Q 005685 538 NEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKLLQFSIPPCQVSRAMSK--DFVKVAL-TVTLKEAIESMKDGQQ 614 (683)
Q Consensus 538 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~V~diM~~--~~~~v~~-~~tl~ea~~~l~~~~~ 614 (683)
. .+.+ .. +.+.+.. ...+++. .++++|...+|+++++
T Consensus 541 ~----------~t~~--------------~~----------------v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~ 580 (696)
T KOG0475|consen 541 S----------STLA--------------IP----------------VMEPCRSESCLIVITQDSMTLEDLESLMEDTDF 580 (696)
T ss_pred c----------cchh--------------hh----------------hhchhcCchhheeccccceeHHHHHHHHhhccc
Confidence 0 0000 00 1111222 2444444 4899999999999999
Q ss_pred CEEEEEecC--CeEEEEEeHHHHHHHHh
Q 005685 615 NCVLVVNGE--DFLEGILTYGDIKRCLS 640 (683)
Q Consensus 615 ~~lPVVd~~--~~lvGiVt~~dl~~~~~ 640 (683)
+.+||+-++ ++++|+|.++|+...+.
T Consensus 581 sgfpvvl~~~sq~lvGfv~rr~l~~~i~ 608 (696)
T KOG0475|consen 581 SGFPVVLSEDSQRLVGFVLRRNLFLAIL 608 (696)
T ss_pred CCceEEEccccceeEEEEchHHHHHHHh
Confidence 999998543 69999999999987743
No 4
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-62 Score=522.69 Aligned_cols=489 Identities=23% Similarity=0.295 Sum_probs=367.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhh--hhhhHHHHH---HHH-HHHHHHHHHH----
Q 005685 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQR--LADTWHRIL---LIP-VTGGVIVGMM---- 157 (683)
Q Consensus 88 ~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---lip-~~gglivgl~---- 157 (683)
..-|+++++||+++|+++...+..++.+..+.+...-....+. +.+. +...+..++ +.+ .++.+++.++
T Consensus 85 ~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~-~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~A 163 (762)
T KOG0474|consen 85 AVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEEC-RSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVA 163 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh-hhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhc
Confidence 3446789999999999999999999998877653221000000 0000 001111111 122 2334444333
Q ss_pred --HHHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHh-------------
Q 005685 158 --HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL------------- 222 (683)
Q Consensus 158 --~g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~------------- 222 (683)
.|+||+...+++-.+| ...+.++++.|+++.+.++++|+.+|||||+||.|+++|+.++|
T Consensus 164 AGSGIPevK~YLNGV~iP-----~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~f 238 (762)
T KOG0474|consen 164 AGSGIPEVKCYLNGVKIP-----GIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWF 238 (762)
T ss_pred cCCCCchhhhhhcCccCc-----ceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhh
Confidence 2455555555543332 23456788999999999999999999999999999999999984
Q ss_pred -hhcCCHHHHHHHHHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhh-----cCCc
Q 005685 223 -MMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL-----LGTQ 296 (683)
Q Consensus 223 -~~~~~~~~r~~l~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l-----~g~~ 296 (683)
.|++|+||| .+++||+|||+||+|+||+||++|++||....|+. ..+|++++++.+++++.|.+ .|..
T Consensus 239 r~FrnDrdrR-D~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq-----~L~WR~fFss~i~~f~l~~~i~~~~~G~~ 312 (762)
T KOG0474|consen 239 RYFRNDRDRR-DLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQ-----ALLWRTFFSSAIVAFVLRAFILSCLSGKC 312 (762)
T ss_pred hhhcccchhh-hhhhcchHHhHHHHhCCCccceEEEechhhHHHHh-----hHHHHHHHHhHHHHHhHHHHHHHHhcCch
Confidence 357888877 58999999999999999999999999999876643 34789999999999988843 2322
Q ss_pred cc--------ccccccC-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHh
Q 005685 297 SA--------FTVPSYD-LKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIAL 367 (683)
Q Consensus 297 ~~--------f~~~~~~-~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~ 367 (683)
.. |.+-+.+ .++.+|+++++++|+++|++|++|+.++.+...++.+ .+|.+..+++...+..++++.++.
T Consensus 313 g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af 391 (762)
T KOG0474|consen 313 GLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAF 391 (762)
T ss_pred hccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHh
Confidence 22 2222222 3578999999999999999999999998777666554 223333334444445555555544
Q ss_pred hcccc--------------c------ccChHHHHHHHhcCCC----------CCCchHHHHHHHHHHHHHHHHHhhccCC
Q 005685 368 RYPGI--------------L------YWGFTNVEEILHTGKT----------ASAPGIWLLTQLAAAKVVATALCKGSGL 417 (683)
Q Consensus 368 ~~P~~--------------l------g~G~~~i~~~l~~~~~----------~~~~~~~~L~~~~~~K~~~t~lt~g~G~ 417 (683)
..|-. . .+-|+++..++-+.++ ...+++..|.++++..++++++|+|.-.
T Consensus 392 ~l~~l~~C~P~~~~~~~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~~ef~~~tL~iFfv~yf~L~~~TfGi~v 471 (762)
T KOG0474|consen 392 GLPFLADCQPCPPSITEGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPTNEFGILTLAIFFVLYFFLACWTFGIAV 471 (762)
T ss_pred hhHHHhcCCCCCCCcccccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhcccc
Confidence 33310 0 0134444443322111 1346677888999999999999999999
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHH
Q 005685 418 VGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (683)
Q Consensus 418 ~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~ 497 (683)
|.|+|.|++.+||+.||++|..+.... .++|+.||++||||+++|++||++|..+|++|+| +..+++|+|
T Consensus 472 psGlFiP~iL~GAa~GRlvg~~l~~~~---------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiM 541 (762)
T KOG0474|consen 472 PSGLFIPVILTGAAYGRLVGMLLGSYT---------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIM 541 (762)
T ss_pred cccchhHHHHhhHHHHHHHHHHHHHhh---------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHH
Confidence 999999999999999999999887653 2689999999999999999999999999999999 678899999
Q ss_pred HHHHHHHHHHHHhhhccccchhhhhhhhcCCCCCCCccchhhhHhhccCCccchhhhhhhccccchhHHHHHHHHHHhhh
Q 005685 498 GAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKLLQ 577 (683)
Q Consensus 498 ~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~yp~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~L~~l~~~~ 577 (683)
++-++|+||++.||+ ++||.++..|+.|++...+ +..+++++
T Consensus 542 lvLliaK~VGD~FNe----giYd~~i~LkgvP~Le~~p-------------------------------e~~mr~L~--- 583 (762)
T KOG0474|consen 542 LVLLIAKTVGDSFNE----GIYDIIIQLKGVPFLEWEP-------------------------------EPYMRNLT--- 583 (762)
T ss_pred HHHHHHHHHHhhhhh----hhHHHhhhccCCccccCCC-------------------------------chHhhhhh---
Confidence 999999999999985 7899999999999873211 23467777
Q ss_pred cCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC-----CeEEEEEeHHHHHHHHhhccC
Q 005685 578 FSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-----DFLEGILTYGDIKRCLSKLSS 644 (683)
Q Consensus 578 ~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-----~~lvGiVt~~dl~~~~~~~~~ 644 (683)
++|+|++++++++..+.++.+++++++++|++|||||+. +++.|+|-|+++...+++++.
T Consensus 584 -------a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f 648 (762)
T KOG0474|consen 584 -------AGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVF 648 (762)
T ss_pred -------HhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999963 489999999999998765543
No 5
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=2.8e-59 Score=518.55 Aligned_cols=403 Identities=22% Similarity=0.311 Sum_probs=328.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHhh
Q 005685 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH----------GLLEILNQI 167 (683)
Q Consensus 98 G~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~----------g~~~v~~~i 167 (683)
|+++|+++..++..++++.++.... .+|..+++++++++++++++. |+++++..+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l 65 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGY---------------CNYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTIL 65 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHH
Confidence 6889999999999999988765321 133335677888888888772 567776666
Q ss_pred hcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhc---CCHHHHHHHHHhhhhhhhh
Q 005685 168 KQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME---NNRERKIALVAAGAASGIA 244 (683)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~---~~~~~r~~l~~~GaaAGia 244 (683)
++... .++.+.++.+.|++++++++++|+|+|||||++|+|+++|+.++|+++ .++++||++++||+|||++
T Consensus 66 ~g~~~-----~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~~~~r~li~~GaaAGla 140 (445)
T cd03684 66 SGFII-----RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNEAKRREILSAAAAAGVA 140 (445)
T ss_pred cCccc-----cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhH
Confidence 54211 134456777899999999999999999999999999999999999874 5777788899999999999
Q ss_pred hhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhc--C--CcccccccccCccccchHHHHHHHHH
Q 005685 245 SGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL--G--TQSAFTVPSYDLKSAAELPLYLILGM 320 (683)
Q Consensus 245 a~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~--g--~~~~f~~~~~~~~~~~~l~~~illGi 320 (683)
|+||||++|++|++||+.++++.+. .++++++|++|+++++.+. + ....|+++....++..++++++++|+
T Consensus 141 AaF~APi~G~lFalE~l~~~~~~~~-----l~~~~~as~~a~~v~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~i~lGi 215 (445)
T cd03684 141 VAFGAPIGGVLFSLEEVSYYFPLKT-----LWRSFFCALVAAFTLKSLNPFGTGRLVLFEVEYDRDWHYFELIPFILLGI 215 (445)
T ss_pred HhcCCccchhhhhhHhhhhhccHHH-----HHHHHHHHHHHHHHHHHhcccCCCCceEEeccCCCCccHHHHHHHHHHHH
Confidence 9999999999999999998877655 4678999999999998762 2 33345544333456789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCC-----------
Q 005685 321 LCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKT----------- 389 (683)
Q Consensus 321 l~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~----------- 389 (683)
+||++|.+|+++..++++++++.+. +.++++++.++++++++++++.|+..++|+..+++++++...
T Consensus 216 ~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~~~g~~~i~~l~~~~~~~~~~~~~~~~~ 293 (445)
T cd03684 216 FGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTRLDMTELLELLFNECEPGDDNSLCCYRD 293 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHccchhhHHHHHHhcCCCccccccccccc
Confidence 9999999999999999998876541 235577899999999999999999999999999888764210
Q ss_pred ---CCC--chHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCC---------cccc
Q 005685 390 ---ASA--PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGN---------VAVA 455 (683)
Q Consensus 390 ---~~~--~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~---------~~~~ 455 (683)
.+. ...+.++.++++|+++|++|+|+|+|||+|.|++++||++|+++|.++..+. ...|+. ....
T Consensus 294 ~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~ 372 (445)
T cd03684 294 PPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA-YSYPDSIFFACCTAGPSCI 372 (445)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH-hhCCcccccccccCCCCcc
Confidence 000 1345677788999999999999999999999999999999999999876542 112221 1125
Q ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhcCCCCC
Q 005685 456 EPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSL 531 (683)
Q Consensus 456 ~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~yp~~ 531 (683)
+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+++ +++||.+++.|++|++
T Consensus 373 ~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~---~siY~~~l~~~g~p~l 445 (445)
T cd03684 373 TPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGK---EGIYDAHIHLNGYPFL 445 (445)
T ss_pred CchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHhcCCCCC
Confidence 789999999999999999999999999999999999999999999999999999874 4799999999999974
No 6
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.2e-58 Score=505.76 Aligned_cols=378 Identities=29% Similarity=0.366 Sum_probs=317.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhc
Q 005685 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHG--------LLEILNQIKQ 169 (683)
Q Consensus 98 G~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~g--------~~~v~~~i~~ 169 (683)
|+++|+++.+|++.++++|++++....... .. .....+||+.+++|++||+++++++. +++++..+++
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~---~~-~~~~~~~~~~~~~~~~ggl~~~l~~~~~~~~g~gi~~v~~~~~~ 76 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSF---LT-GVAAVSPIRRALSLTVGGLIAGLGWYLLRRKGKKLVSIKQAVRG 76 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccc---hh-hhccCChHHHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhcC
Confidence 678999999999999999999886432211 11 01123455677889999999998743 2344443332
Q ss_pred CCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCCHHHHHHHHHhhhhhhhhhhccc
Q 005685 170 SSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNA 249 (683)
Q Consensus 170 ~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~GaaAGiaa~F~a 249 (683)
. +.++.+..+.|.+++++++++|+|+|||||++|+|++++++++|+++.++++||.+++||+|||+||+|||
T Consensus 77 ~--------~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~a 148 (388)
T cd01033 77 K--------KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGLTVADRRLLVACAAGAGLAAVYNV 148 (388)
T ss_pred C--------CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 12333444579999999999999999999999999999999999999988888899999999999999999
Q ss_pred ccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHHHHHHHHHHHHH
Q 005685 250 AVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVF 329 (683)
Q Consensus 250 Pi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf 329 (683)
|++|++|++|+++++++.+. .++++++|++++.+++.++|+++.|.+++++. ++.++++++++|++||+++.+|
T Consensus 149 PlaG~lFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~g~~~~f~~~~~~~-~~~~l~~~illGi~~Gl~~~lf 222 (388)
T cd01033 149 PLAGALFALEILLRTISLRS-----VVAALATSAIAAAVASLLKGDHPIYDIPPMQL-STPLLIWALLAGPVLGVVAAGF 222 (388)
T ss_pred chHHHHHHHHHHHHhccHHH-----HHHHHHHHHHHHHHHHHhCCCCceeecCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876554 45689999999999999999999999887654 4788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHH
Q 005685 330 TRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVAT 409 (683)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~~~~~~~~L~~~~~~K~~~t 409 (683)
++.+.+.++++++ . .+.++++.++|++++++.+++|+.+|+|++.++.++++. .+.+.++.+++.|+++|
T Consensus 223 ~~~~~~~~~~~~~----~-~~~~~~~~l~gl~~g~~~~~~p~~~G~G~~~i~~~~~~~-----~~~~~ll~~~~~K~~~t 292 (388)
T cd01033 223 RRLSQAARAKRPK----G-KRILWQMPLAFLVIGLLSIFFPQILGNGRALAQLAFSTT-----LTLSLLLILLVLKIVAT 292 (388)
T ss_pred HHHHHHHHHHhcc----c-cchHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcCC-----chHHHHHHHHHHHHHHH
Confidence 9999998876632 1 234567889999999999999999999999999888643 23456677889999999
Q ss_pred HHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhC-
Q 005685 410 ALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR- 488 (683)
Q Consensus 410 ~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg- 488 (683)
++|+|+|.+||.|.|++++|+++|..+|+.++.. +|+ .++..|+++||+|++++++|+|+|++++++|+||
T Consensus 293 ~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~----~p~----~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~ 364 (388)
T cd01033 293 LLALRAGAYGGLLTPSLALGALLGALLGIVWNAL----LPP----LSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQ 364 (388)
T ss_pred HHHHccCCCccchHHHHHHHHHHHHHHHHHHHHh----CCc----ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999876543 343 3688999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh
Q 005685 489 DYRILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 489 ~~~~l~P~~~a~~~a~~v~~~~~ 511 (683)
+++.++|+|+++++|+.+++.++
T Consensus 365 ~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 365 NPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 7
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-60 Score=516.45 Aligned_cols=497 Identities=23% Similarity=0.307 Sum_probs=371.6
Q ss_pred hccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHH-HH
Q 005685 80 LTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHE---WAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVI-VG 155 (683)
Q Consensus 80 ~~~~~~~~~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~ggli-vg 155 (683)
+.+++.++| ++..++|++++++.+.+++++..+++ |++........ + ..|..|...|+.--+. .+
T Consensus 88 i~r~l~eDW---~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~-y-------l~yl~Wv~y~v~Li~fSA~ 156 (931)
T KOG0476|consen 88 IVRKLGEDW---FFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHS-Y-------LAYLSWVGYPVGLVLFSAG 156 (931)
T ss_pred HHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-H-------HHHHHHHHHHHHHHHHHHH
Confidence 333445555 46788999999999999999988665 44433221110 0 1122233334422222 23
Q ss_pred HHHHHHHHHHhhhcCCcccccC-------cccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhc---
Q 005685 156 MMHGLLEILNQIKQSSSLDRQG-------FDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME--- 225 (683)
Q Consensus 156 l~~g~~~v~~~i~~~~~~~~~g-------~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~--- 225 (683)
+.| -+.+|--++++|+.+. .||+..++++.|.++..+++|||+++|||||+|||++++++.++|...
T Consensus 157 f~h---~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~ 233 (931)
T KOG0476|consen 157 FCH---YIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQF 233 (931)
T ss_pred HHh---eeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhc
Confidence 333 2345556677776553 378888999999999999999999999999999999999999998743
Q ss_pred ----CCHHHHHHHHHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcC--C--c-
Q 005685 226 ----NNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLG--T--Q- 296 (683)
Q Consensus 226 ----~~~~~r~~l~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g--~--~- 296 (683)
.|+.|+..|+++|||.|+|+.|.||+||+||++|+++.+|.++|+ |+.|+|++++++++|.+.- . +
T Consensus 234 ~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnY-----WRGFFAAtcsA~vFR~lavf~v~~~~ 308 (931)
T KOG0476|consen 234 GGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNY-----WRGFFAATCSAFVFRLLAVFFVEAEV 308 (931)
T ss_pred cccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHH-----HHHHHHHHhHHHHHHHHHHHcccchh
Confidence 567788899999999999999999999999999999999999985 6799999999999997631 1 1
Q ss_pred --cccccccc--C-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhcCCchhHHHhhhHHHHHHHHhh
Q 005685 297 --SAFTVPSY--D-LKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFD---FIKEKFGLPPVVCPALGGLGAGIIALR 368 (683)
Q Consensus 297 --~~f~~~~~--~-~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~---~~~~~~~~~~~~~~~iggl~~g~i~~~ 368 (683)
..|.-+.+ + .+.+.|+|+|+++|++||++|++|+++.+.+.-+.+ ..++-+...+.+.+++..++++. +.
T Consensus 309 tItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ss--lt 386 (931)
T KOG0476|consen 309 TITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSS--LT 386 (931)
T ss_pred hhHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhh--ee
Confidence 11221222 2 467899999999999999999999877543322211 11111223445667766666554 35
Q ss_pred ccccccc---C----hHHHHHHHhcCC--------C---------CCC-----chHHHHHHHHHHHHHHHHHhhccCCcc
Q 005685 369 YPGILYW---G----FTNVEEILHTGK--------T---------ASA-----PGIWLLTQLAAAKVVATALCKGSGLVG 419 (683)
Q Consensus 369 ~P~~lg~---G----~~~i~~~l~~~~--------~---------~~~-----~~~~~L~~~~~~K~~~t~lt~g~G~~g 419 (683)
||.-+|. | -.++.+.++|.. . |.. .....|.++.++||+++.+|....+|.
T Consensus 387 fP~GlG~f~aG~l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~TipvPs 466 (931)
T KOG0476|consen 387 FPPGLGQFLAGRLSFRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATTIPVPS 466 (931)
T ss_pred cCCcccccccccccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhccccCc
Confidence 7765543 1 123444554321 0 000 113457888999999999999999999
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHhhhCC--CCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHH
Q 005685 420 GLYAPSLMIGAAVGAVFGGSAAEIINSAIP--GNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (683)
Q Consensus 420 G~f~Psl~iGA~~G~~~g~~~~~~~~~~~p--~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~ 497 (683)
|.|+|.+++||++||++|+.+..+++..+- +....+.|+.||++|||||.+++|++ +|.+||+||+||+...++|+|
T Consensus 467 G~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVTHT-vSvAVIifElTGQl~hiLPVm 545 (931)
T KOG0476|consen 467 GVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAVTHT-VSVAVIIFELTGQLCHILPVM 545 (931)
T ss_pred cceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhccceeee-eeEEEEEEeeccchHHHHHHH
Confidence 999999999999999999988776654432 22446789999999999999999995 999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccchhhhhhhhcCCCCCCCccchhhhHhhccCCccchhhhhhhccccchhHHHHHHHHHHhhh
Q 005685 498 GAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKLLQ 577 (683)
Q Consensus 498 ~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~yp~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~L~~l~~~~ 577 (683)
+|+++|++|+..++ +++||+.+..|+||++...... +....+++
T Consensus 546 IAVllaNAVa~~LQ----PSiYDSII~IKklPYLPDlpps-----------------------------~~~~h~v~--- 589 (931)
T KOG0476|consen 546 IAVLLANAVAASLQ----PSIYDSIIRIKKLPYLPDLPPS-----------------------------RSSVHTVK--- 589 (931)
T ss_pred HHHHHHHHHHHHhC----cchhhheeeeccCCcCCCCCCc-----------------------------ccceeEEE---
Confidence 99999999999885 5899999999999998311100 00112233
Q ss_pred cCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC--CeEEEEEeHHHHHHHHhh
Q 005685 578 FSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE--DFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 578 ~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~--~~lvGiVt~~dl~~~~~~ 641 (683)
|+|+|.+|++++..++|.+|+.+.++.+..+.+|+||+. ..|+|.|.|+++...++.
T Consensus 590 -------VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 590 -------VEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred -------eeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 999999999999999999999999998889999999965 479999999999998765
No 8
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=3.9e-56 Score=489.56 Aligned_cols=391 Identities=27% Similarity=0.420 Sum_probs=327.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHh
Q 005685 97 LGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH----------GLLEILNQ 166 (683)
Q Consensus 97 iG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~----------g~~~v~~~ 166 (683)
+|+++|+++.+|++.+++++++++...+.. .+....|+.++++|.++|++++++. |+++++..
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~ 73 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFA-------ANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGV 73 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhc-------ccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHH
Confidence 488999999999999999999876522110 0011123344667888888888752 35666666
Q ss_pred hhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCCHHHHHHHHHhhhhhhhhhh
Q 005685 167 IKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASG 246 (683)
Q Consensus 167 i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~GaaAGiaa~ 246 (683)
+++.. ++...++.+.|++++++++++|+|+|||||++|+|+++|++++|+++.+.++++.+++||+|||++++
T Consensus 74 l~~~~-------~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~~~~~~~~l~~~g~aag~aa~ 146 (402)
T cd01031 74 LAGLL-------PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKTSPEERRQLIAAGAAAGLAAA 146 (402)
T ss_pred HcCCC-------CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHH
Confidence 65431 12234566789999999999999999999999999999999999999888778899999999999999
Q ss_pred cccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHHHHHHHHHH
Q 005685 247 FNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVS 326 (683)
Q Consensus 247 F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g 326 (683)
||||++|++|++|++.++++.+. .+++++++++++++++.++++++.|.++.++.+++.++++++++|++||++|
T Consensus 147 f~aPl~g~lf~~E~~~~~~~~~~-----~~~~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g 221 (402)
T cd01031 147 FNAPLAGVLFVLEELRHSFSPLA-----LLTALVASIAADFVSRLFFGLGPVLSIPPLPALPLKSYWLLLLLGIIAGLLG 221 (402)
T ss_pred hCCccHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765433 4668899999999999999999999988777678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 005685 327 VVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKV 406 (683)
Q Consensus 327 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~~~~~~~~L~~~~~~K~ 406 (683)
.+|++...+.++++++++ +.++++++.++|++++++.+++|+.+|+|++.++...++. .+...++.+++.|+
T Consensus 222 ~~f~~~~~~~~~~~~~~~---~~~~~~~~~l~gl~~~~~~~~~p~~~g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~ 293 (402)
T cd01031 222 YLFNRSLLKSQDLYRKLK---KLPRELRVLLPGLLIGPLGLLLPEALGGGHGLILSLAGGN-----FSISLLLLIFVLRF 293 (402)
T ss_pred HHHHHHHHHHHHHHHhcc---cCChhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC-----chHHHHHHHHHHHH
Confidence 999999999988876542 3456788999999999999999999999999888776432 33556777889999
Q ss_pred HHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 005685 407 VATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFEL 486 (683)
Q Consensus 407 ~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~El 486 (683)
++|++|+++|++||.|.|++++||++|+++|+.++.+ +|. ...+|..|+++||+|++++++|+|+|++++++|+
T Consensus 294 ~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~----~~~--~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~El 367 (402)
T cd01031 294 IFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQL----GPI--PISAPATFAIAGMAAFFAAVVRAPITAIILVTEM 367 (402)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh----cCc--ccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999887654 332 1357999999999999999999999999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhh
Q 005685 487 TRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRT 523 (683)
Q Consensus 487 tg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~ 523 (683)
||++++++|+|+++++|+++++.+++ ++.||.++
T Consensus 368 tg~~~~l~p~~ia~~ia~~v~~~~~~---~siY~~~l 401 (402)
T cd01031 368 TGNFNLLLPLMVVCLVAYLVADLLGG---KPIYEALL 401 (402)
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHhCC---CChhHHHh
Confidence 99999999999999999999998853 46777654
No 9
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=1.7e-55 Score=490.68 Aligned_cols=394 Identities=23% Similarity=0.322 Sum_probs=296.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--------
Q 005685 87 EWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH-------- 158 (683)
Q Consensus 87 ~~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~-------- 158 (683)
++.-|++++++|+++|+++++|++.+++++++.+..... +.........|..++++|+++|++++++.
T Consensus 29 ~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~ 104 (466)
T cd03685 29 EFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKN----YIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAA 104 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 355567889999999999999999999999886532100 00000011223334577888999888862
Q ss_pred --HHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhh-----------hc
Q 005685 159 --GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLM-----------ME 225 (683)
Q Consensus 159 --g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~-----------~~ 225 (683)
|+++++..+++... .+..+.++.+.|++++++++++|+|+|||||++|+||++|+.++|+ ++
T Consensus 105 GsGip~v~~~l~g~~~-----~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~ 179 (466)
T cd03685 105 GSGIPEVKGYLNGVKI-----PHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFR 179 (466)
T ss_pred CCCHHHHHHHHcCcCc-----cccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhh
Confidence 56676666653211 1233456777999999999999999999999999999999999973 22
Q ss_pred --CCHHHHHHHHHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhc---CC--ccc
Q 005685 226 --NNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL---GT--QSA 298 (683)
Q Consensus 226 --~~~~~r~~l~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~---g~--~~~ 298 (683)
.++++||++++||+|||+|++||||++|++|++|++.++++.+.. ++.+++|++++.+++.+. +. ...
T Consensus 180 ~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~-----~~~l~~s~ias~va~~~~~~~~~~~~~~ 254 (466)
T cd03685 180 YFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALT-----WRTFFSSMIVTFTLNFFLSGCNSGKCGL 254 (466)
T ss_pred hccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHH-----HHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 255566689999999999999999999999999999887765542 335556666655555432 11 112
Q ss_pred c--------cccc-cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhc
Q 005685 299 F--------TVPS-YDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY 369 (683)
Q Consensus 299 f--------~~~~-~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~ 369 (683)
| ..+. ...+++.++++++++|++||++|.+|++...++++++++.+++ +++.+ .+.+++++++...+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~~~-~l~~~lv~~~~~~~ 330 (466)
T cd03685 255 FGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHK---GKLLK-VLEALLVSLVTSVV 330 (466)
T ss_pred cCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cchhH-HHHHHHHHHHHHHH
Confidence 2 2221 2234678999999999999999999999999998887654321 22222 23334433332222
Q ss_pred ccccccChHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCC
Q 005685 370 PGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIP 449 (683)
Q Consensus 370 P~~lg~G~~~i~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p 449 (683)
+. ...+..++++|+++|++|+|+|+|||+|.|++++||++|+++|.++..+. |
T Consensus 331 ~~-----------------------~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~----~ 383 (466)
T cd03685 331 AF-----------------------PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYF----G 383 (466)
T ss_pred HH-----------------------HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHc----c
Confidence 11 12345566789999999999999999999999999999999998876543 2
Q ss_pred CCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhcCCC
Q 005685 450 GNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYS 529 (683)
Q Consensus 450 ~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~yp 529 (683)
. ...+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.++ +++||.+++.|++|
T Consensus 384 ~--~~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~----~siY~~~l~~~g~p 457 (466)
T cd03685 384 F--TSIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFN----EGIYDIIIQLKGVP 457 (466)
T ss_pred c--cCCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhC----CCHHHHHHHhCCCc
Confidence 2 13578999999999999999999999999999999999999999999999999999875 37999999999999
Q ss_pred CC
Q 005685 530 SL 531 (683)
Q Consensus 530 ~~ 531 (683)
++
T Consensus 458 ~l 459 (466)
T cd03685 458 FL 459 (466)
T ss_pred cc
Confidence 97
No 10
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=2.1e-55 Score=488.44 Aligned_cols=402 Identities=26% Similarity=0.383 Sum_probs=321.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHH---HHHHHHHHHHHHHHH----------H
Q 005685 92 LIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHR---ILLIPVTGGVIVGMM----------H 158 (683)
Q Consensus 92 ~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lip~~gglivgl~----------~ 158 (683)
++++++|+++|+++.+|++.+++++++++..... . ...+|+. .++++.+++++++++ .
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~Gs 72 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS--------V-ADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGS 72 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h-cccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 5789999999999999999999999987642110 0 0112211 223344444444443 1
Q ss_pred HHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcC-CHHHHHHHHHh
Q 005685 159 GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKIALVAA 237 (683)
Q Consensus 159 g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~-~~~~r~~l~~~ 237 (683)
|++++...+++.. ..+ ..++...|++++++++++|+|+|||||++|+|+++|++++++++. ++++++.+++|
T Consensus 73 Gi~~i~~~l~~~~-----~~~--~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~~~~~~~~li~~ 145 (438)
T PRK05277 73 GIPEIEGALEGLR-----PVR--WWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLRSDEARHTLLAA 145 (438)
T ss_pred CHHHHHHHHcCCC-----ccc--hHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 3556555554321 111 134557899999999999999999999999999999999999987 77777889999
Q ss_pred hhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHH
Q 005685 238 GAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLI 317 (683)
Q Consensus 238 GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~il 317 (683)
|+|||++++||||++|++|++|++.++++... -..+++++++++++.+++.+.++++.|.++.++..+..+++++++
T Consensus 146 G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~---~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~ 222 (438)
T PRK05277 146 GAAAGLAAAFNAPLAGILFVIEEMRPQFRYSL---ISIKAVFIGVIMATIVFRLFNGEQAVIEVGKFSAPPLNTLWLFLL 222 (438)
T ss_pred HHHHhHHHhcCCchHHHHHHHHHHHhhccccH---HHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999876442211 123567899999999999999999999888776667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCCCCchHHH
Q 005685 318 LGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWL 397 (683)
Q Consensus 318 lGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~~~~~~~~ 397 (683)
+|++||++|.+|++.+.+.++++++++++...+.++...++|++++++.+++|+..|+|++.+++.+++. .+...
T Consensus 223 lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~~g~G~~~i~~~~~~~-----~~~~~ 297 (438)
T PRK05277 223 LGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAAVGGGFNLIPIALAGN-----FSIGM 297 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHcCC-----chHHH
Confidence 9999999999999999999988876543222223345567888899999999999999999999887543 23455
Q ss_pred HHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcchH
Q 005685 398 LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPL 477 (683)
Q Consensus 398 L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Pl 477 (683)
++.+++.|+++|++|+|+|++||.|.|++++||++|+.+|..++.+ +|.. ..+|..|+++||+|++++++|+|+
T Consensus 298 l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~----~p~~--~~~~~~~a~~G~aA~la~~~~aPl 371 (438)
T PRK05277 298 LLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAAL----FPQY--HIEPGTFAIAGMGALFAATVRAPL 371 (438)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH----cCcc--cccHHHHHHHHHHHHHHHHHHhHH
Confidence 6778899999999999999999999999999999999999887654 3431 247899999999999999999999
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhc
Q 005685 478 TSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLAR 526 (683)
Q Consensus 478 t~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~ 526 (683)
|++++++|+||+++.++|+|+++++|+++++.+++ ++.||.++++.
T Consensus 372 t~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~---~~iy~~~l~~~ 417 (438)
T PRK05277 372 TGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGG---KPIYSALLERT 417 (438)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHH
Confidence 99999999999999999999999999999998854 45777775553
No 11
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=1.2e-55 Score=487.37 Aligned_cols=392 Identities=24% Similarity=0.314 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhhHHHHhhhhhhHHHHHHHHHHHHHHHHHH----------HHH
Q 005685 92 LIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPN-EGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HGL 160 (683)
Q Consensus 92 ~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lip~~gglivgl~----------~g~ 160 (683)
++.+++|+++|+++..++..+++++++....... ++..| .+|..++++|++++++++++ +|+
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGI 75 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSL-------LQYLVWVAYPVALVLFSALFCKYISPQAVGSGI 75 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH-------HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCH
Confidence 4567889999999999999999988765421110 00000 12334567799888888876 256
Q ss_pred HHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhc------CCHHHHHHH
Q 005685 161 LEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME------NNRERKIAL 234 (683)
Q Consensus 161 ~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~------~~~~~r~~l 234 (683)
++++..+++... .++.+.++.+.|++++++++++|+|+|||||+||+|+++++.++|+++ .++++||++
T Consensus 76 p~v~~~l~g~~~-----~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~L 150 (426)
T cd03683 76 PEMKTILRGVVL-----PEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESRRMEM 150 (426)
T ss_pred HHHHHHHcCCCc-----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHHHHHH
Confidence 677666654221 134445677889999999999999999999999999999999999874 466677789
Q ss_pred HHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhc----CCccc---ccccc--cC
Q 005685 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL----GTQSA---FTVPS--YD 305 (683)
Q Consensus 235 ~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~----g~~~~---f~~~~--~~ 305 (683)
++||+|||+||+||||++|++|++|+++++++.+. .++++++|++++++++.+. +..+. |..+. ..
T Consensus 151 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~-----~~~~~i~s~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (426)
T cd03683 151 LAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRN-----YWRGFFAATCGAFTFRLLAVFFSDQETITALFKTTFFVDF 225 (426)
T ss_pred HHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHH-----HHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccCCC
Confidence 99999999999999999999999999998877654 3567899999998887653 22322 32221 12
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHH
Q 005685 306 LKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKE---KFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEE 382 (683)
Q Consensus 306 ~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~---~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~ 382 (683)
.++..++++++++|++||++|.+|++.+.++++++++.++ ..+.+++++++++|++++++. +|
T Consensus 226 ~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~--~p------------ 291 (426)
T cd03683 226 PFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLT--FP------------ 291 (426)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHH--HH------------
Confidence 3466899999999999999999999999999888765432 123456778888888877653 34
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCC-CCccccchHHHH
Q 005685 383 ILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIP-GNVAVAEPQAYA 461 (683)
Q Consensus 383 ~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p-~~~~~~~~~~~a 461 (683)
...++.+.++|+++|++|+|+|+|||+|.|++++||++|+++|..+..+++..++ .+....+|+.|+
T Consensus 292 ------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~a 359 (426)
T cd03683 292 ------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYA 359 (426)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHH
Confidence 2345667889999999999999999999999999999999999887654321000 001235789999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhcCCCCC
Q 005685 462 LVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSL 531 (683)
Q Consensus 462 lvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~yp~~ 531 (683)
++||+|++++++|+|.++ ++++|+||++++++|+|+++++|+++++.++ +++||.+++.|++|++
T Consensus 360 lvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~----~~iY~~~l~~~~~p~l 424 (426)
T cd03683 360 VVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQ----PSIYDSIIKIKKLPYL 424 (426)
T ss_pred HHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhC----CCHHHHHHHhCCCCCC
Confidence 999999999999997766 6999999999999999999999999999885 3799999999999997
No 12
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.1e-55 Score=481.42 Aligned_cols=373 Identities=29% Similarity=0.412 Sum_probs=308.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhcCCc
Q 005685 102 GLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH---------GLLEILNQIKQSSS 172 (683)
Q Consensus 102 Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~---------g~~~v~~~i~~~~~ 172 (683)
|+++..|+.++++++++++... ...+|+.++++|+.|++++++++ |+++++..++....
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~ 68 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLT------------ATHPWLPLLLTPAGFALIAWLTRRFFPGAAGSGIPQVIAALELPSA 68 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHH------------HhchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHccccc
Confidence 5678899999999998876311 01245445677998888887763 57788877774322
Q ss_pred ccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCC-HHHHHHHHHhhhhhhhhhhccccc
Q 005685 173 LDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENN-RERKIALVAAGAASGIASGFNAAV 251 (683)
Q Consensus 173 ~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~-~~~r~~l~~~GaaAGiaa~F~aPi 251 (683)
..+. ++++.++.+.|++++++++++|+|+|||||++|+|++++++++|+++.. +++||++++||+|||+||+||||+
T Consensus 69 ~~~~--~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~aPl 146 (390)
T cd01034 69 AARR--RLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWGGLSERGLILAGGAAGLAAAFNTPL 146 (390)
T ss_pred cccc--ccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHhHHHHhCCcc
Confidence 1111 2455677789999999999999999999999999999999999999874 566778999999999999999999
Q ss_pred chhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHHHHHHHHHHHHHHH
Q 005685 252 AGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTR 331 (683)
Q Consensus 252 ~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~ 331 (683)
+|++|++|+++++++.+. .+++++++++++++++.++|+++.|.+++.+..++.++++++++|++||++|.+|++
T Consensus 147 aG~lF~~E~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~illGii~G~~g~lF~~ 221 (390)
T cd01034 147 AGIVFAIEELSRDFELRF-----SGLVLLAVIAAGLVSLAVLGNYPYFGVAAVALPLGEAWLLVLVCGVVGGLAGGLFAR 221 (390)
T ss_pred hhHHHHHHHhhhhhhHHH-----HHHHHHHHHHHHHHHHHHcCCCCccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776543 345778889999999999999999998876656778899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-CCchhHHHhhhHHHHHHHHhhcc-cccccChHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHH
Q 005685 332 LVAWFTKSFDFIKEKF-GLPPVVCPALGGLGAGIIALRYP-GILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVAT 409 (683)
Q Consensus 332 ~~~~~~~~~~~~~~~~-~~~~~~~~~iggl~~g~i~~~~P-~~lg~G~~~i~~~l~~~~~~~~~~~~~L~~~~~~K~~~t 409 (683)
.+.++++++++.+++. ..++++++.++|++++++.+++| +.+|+|++.+++++++... . ...+.++|+++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~G~G~~~i~~~~~~~~~---~----~~~~~l~K~i~t 294 (390)
T cd01034 222 LLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLTFGTGYLQARAALEGGGG---L----PLWFGLLKFLAT 294 (390)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCccccCcHHHHHHHHhCCCc---c----cHHHHHHHHHHH
Confidence 9999998887654222 23455677788888888888876 6788999999988764321 1 123567999999
Q ss_pred HHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhCC
Q 005685 410 ALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRD 489 (683)
Q Consensus 410 ~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~ 489 (683)
.+|+++|+|||.|.|++++||++|++++.++. . .++..|+++||+|++++++|+|+|++++++|+|++
T Consensus 295 ~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~--------~----~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~ 362 (390)
T cd01034 295 LLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG--------S----VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGD 362 (390)
T ss_pred HHHHHcCCCcceechHHHHHHHHHHHHHHHhc--------C----CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 99999999999999999999999999986432 1 36899999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh
Q 005685 490 YRILLPLMGAVGLAIWVPSVANQ 512 (683)
Q Consensus 490 ~~~l~P~~~a~~~a~~v~~~~~~ 512 (683)
+++++|+|+++++|+++++.+++
T Consensus 363 ~~~l~p~lia~~~A~~v~~~~~~ 385 (390)
T cd01034 363 QQMLLPLLAAALLASGVSRLVCP 385 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999998854
No 13
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-55 Score=483.77 Aligned_cols=357 Identities=34% Similarity=0.575 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHHHHH-H----------HHHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHH
Q 005685 142 RILLIPVTGGVIVGM-M----------HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSV 210 (683)
Q Consensus 142 ~~~lip~~gglivgl-~----------~g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v 210 (683)
+++++|+.+|+++|. + +|++++++.+++.. ...+++...+|.+++.+++++|+|+|||||+|
T Consensus 65 ~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~~-------~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~v 137 (443)
T COG0038 65 LLPLVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGRK-------GRISPRVLPVKLVATLLTIGSGASLGREGPSV 137 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcCC-------CcccHHHHHHHHHHHHHHHhcCcccccccHHH
Confidence 467788899999993 2 24556666555421 12344566789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHhhhhhhhhhhcccccchhhhheeccccc-ccccCCCchhHHHHHHHHHHHHHHH
Q 005685 211 DIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRP-LRAENSPPFTTAMIILASVISSTVS 289 (683)
Q Consensus 211 ~iGa~ig~~l~~~~~~~~~~r~~l~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~-~~~~~~~~~~~~~~~~asv~a~~v~ 289 (683)
|+|+++|+.++|+++.++++||.+++||+|||+||+||||++|++|++|+++++ ++.+ ...+++++|++++.+.
T Consensus 138 qiga~~g~~~~~~l~~~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~-----~l~p~~vaa~va~~v~ 212 (443)
T COG0038 138 QIGAAIGSLLGRLLKLSREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYR-----ALVPVLVAAVVALLVA 212 (443)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHH-----HHHHHHHHHHHHHHHH
Confidence 999999999999999999888899999999999999999999999999999987 4443 3567899999999999
Q ss_pred HhhcCCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhc
Q 005685 290 TVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY 369 (683)
Q Consensus 290 ~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~ 369 (683)
+.+.+.++.+.+++.+..+.++++.++++|+++|++|.+|.++....+++++ |.+.+++++++++|++++.+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~l~g~~~l~~ 288 (443)
T COG0038 213 GLFGGPHFLLPIVTTPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFFR----RLPLPPLLRPALGGLLVGALGLLF 288 (443)
T ss_pred HHcCCCCceeeccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHHHHHHhc
Confidence 9998877777777776678899999999999999999999999977755543 445667889999999999999999
Q ss_pred ccccccChHHHHHHHhcCCCCCCchHHH-HHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhC
Q 005685 370 PGILYWGFTNVEEILHTGKTASAPGIWL-LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAI 448 (683)
Q Consensus 370 P~~lg~G~~~i~~~l~~~~~~~~~~~~~-L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~ 448 (683)
|+.+++|++.++...+... .+. +..+++.|+++|.+|+|+|.|||+|.|++++|+++|.++|..+..+ +
T Consensus 289 P~~lg~G~~~~~~~~~~~~------~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~----~ 358 (443)
T COG0038 289 PEVLGNGYGLIQLALAGEG------GLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLL----F 358 (443)
T ss_pred hhhhCCCccHHHHHHccCc------cHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhh----c
Confidence 9999999999888776432 133 6778999999999999999999999999999999999999876543 3
Q ss_pred CCCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhcCC
Q 005685 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGY 528 (683)
Q Consensus 449 p~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y 528 (683)
|.. ...+..|+++||++++++++|+|+|++++++||||+++.++|+|+++++++++++...+ +..|+....+++.
T Consensus 359 ~~~--~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~---~~~~~~~~~~~~~ 433 (443)
T COG0038 359 PPS--ILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGG---RPIYTQLLARRGA 433 (443)
T ss_pred Ccc--ccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCC---CcHHHHHHHhcCc
Confidence 331 24678999999999999999999999999999999999999999999999999998764 3456666666666
Q ss_pred C
Q 005685 529 S 529 (683)
Q Consensus 529 p 529 (683)
+
T Consensus 434 ~ 434 (443)
T COG0038 434 P 434 (443)
T ss_pred h
Confidence 5
No 14
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=1.4e-54 Score=477.83 Aligned_cols=371 Identities=25% Similarity=0.291 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHhh
Q 005685 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HGLLEILNQI 167 (683)
Q Consensus 98 G~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~----------~g~~~v~~~i 167 (683)
|+++|+++..|+.++++.+++..........+ ....|..+++.|++++++++++ .|++|++..+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l 74 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGS------YLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYL 74 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccc------hHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 56778888888888888777654221110000 0112323456788777776665 2577777766
Q ss_pred hcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhc-------------CCHHHHHHH
Q 005685 168 KQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME-------------NNRERKIAL 234 (683)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~-------------~~~~~r~~l 234 (683)
++... .++++.++.+.|++++++++++|+|+|||||+||+|+++|+.++++++ .++++||++
T Consensus 75 ~g~~~-----~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l 149 (416)
T cd01036 75 NGVHL-----PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDF 149 (416)
T ss_pred cCCcc-----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHH
Confidence 54211 134556778899999999999999999999999999999999998754 356677789
Q ss_pred HHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCccccc--------------
Q 005685 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT-------------- 300 (683)
Q Consensus 235 ~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~-------------- 300 (683)
++||+|||+||+||||++|++|++|++.++++.++ .++++++|++++++++.+.+..+.+.
T Consensus 150 l~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (416)
T cd01036 150 LVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRL-----AWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTV 224 (416)
T ss_pred HHHHhhcchhhccCCcceeeeeeeHHhhccccHHH-----HHHHHHHHHHHHHHHHHhccccCCccccccccccceeccc
Confidence 99999999999999999999999999988877654 46789999999999998876554332
Q ss_pred ccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhHHHhhhHHHHHHHHhhcccccccChHH
Q 005685 301 VPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEK-FGLPPVVCPALGGLGAGIIALRYPGILYWGFTN 379 (683)
Q Consensus 301 ~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~-~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~ 379 (683)
++....++..++++++++|++||++|.+|++++.++++++++.++. .+.++++++.+++++++++.+
T Consensus 225 ~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------ 292 (416)
T cd01036 225 FELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY------------ 292 (416)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH------------
Confidence 2222334668999999999999999999999999999988765432 234557788888888888754
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCC--CCccccch
Q 005685 380 VEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIP--GNVAVAEP 457 (683)
Q Consensus 380 i~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p--~~~~~~~~ 457 (683)
...++.+++.|+++|.+|+++|+|||+|.|++++||++|+++|.++..+++...+ ......+|
T Consensus 293 ---------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T cd01036 293 ---------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADP 357 (416)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccCh
Confidence 1345667889999999999999999999999999999999999887655321110 01123578
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhh
Q 005685 458 QAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 458 ~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~ 511 (683)
+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.++
T Consensus 358 ~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~ 411 (416)
T cd01036 358 GVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFC 411 (416)
T ss_pred HHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999987
No 15
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=1.2e-54 Score=469.89 Aligned_cols=330 Identities=38% Similarity=0.640 Sum_probs=272.0
Q ss_pred HHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcC-CHHHHHHHHHh
Q 005685 159 GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKIALVAA 237 (683)
Q Consensus 159 g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~-~~~~r~~l~~~ 237 (683)
|+++++..+++... ..+.+..+.|++++++++++|+|+|||||++|+|++++++++|+++. +++++|.+++|
T Consensus 21 Gi~~v~~~~~~~~~-------~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~ 93 (355)
T PF00654_consen 21 GIPEVKAALRGKSG-------RLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAA 93 (355)
T ss_dssp SHHHHHHHCTTSS----------HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCC-------CCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHH
Confidence 56777777664321 24456678999999999999999999999999999999999999984 45535669999
Q ss_pred hhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCccccc-ccccCccccchHHHHH
Q 005685 238 GAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT-VPSYDLKSAAELPLYL 316 (683)
Q Consensus 238 GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~-~~~~~~~~~~~l~~~i 316 (683)
|+|||+||+||||++|++|++|++.++++.+. .++++++|++++++++.++++++.|. +++...+++.++++++
T Consensus 94 g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 168 (355)
T PF00654_consen 94 GAAAGLAAAFNAPLAGVLFALEELSRDFSVRL-----LLPALVASIVATLVSRLLFGNHPIFGSVPQLFPFSLWELPLFL 168 (355)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTT-----HHHHHHHHHHHHHHHHHHHTSS-SS---TT-----GGGHHHHH
T ss_pred HHHHHHHHHhcCCcccceehhheeeccccchh-----hHHHHHHHHHHHHHHHHHcCcCcccccccccccCCHHHHHHHH
Confidence 99999999999999999999999888877654 46789999999999999999999998 8877677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhccc--ccccChHHHHHHHhcCCCCCCch
Q 005685 317 ILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPG--ILYWGFTNVEEILHTGKTASAPG 394 (683)
Q Consensus 317 llGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~--~lg~G~~~i~~~l~~~~~~~~~~ 394 (683)
++|++||++|.+|++...++++++++++ +.+.++++++.++|++++++++++|+ ++|+|++.+++++++... ...
T Consensus 169 llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl~~g~l~~~~p~~~~~g~G~~~i~~ll~~~~~--~~~ 245 (355)
T PF00654_consen 169 LLGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGLVIGLLAFFFPEGSVLGSGYELIQSLLSGSPP--WFS 245 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHSSGG-SGSSSSTTHHHHHCTT------S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHHcCCcc--hhh
Confidence 9999999999999999999999998876 44445567999999999999999999 999999999988854311 245
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhc
Q 005685 395 IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS 474 (683)
Q Consensus 395 ~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~ 474 (683)
.+.++.+++.|+++|.+|+++|++||.|.|++++|+++|++++.++... +|+... .+|..|+++||+|++++++|
T Consensus 246 ~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~----~~~~~~-~~~~~~al~G~~a~~~a~~~ 320 (355)
T PF00654_consen 246 LGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSF----FPGISS-VDPGVYALVGMAAFLAAVTR 320 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-----GGG-T--SHHHHHHHHTTHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhh----CCCcCC-CchHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999887654 343222 27999999999999999999
Q ss_pred chHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Q 005685 475 VPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPS 508 (683)
Q Consensus 475 ~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~ 508 (683)
+|++++++++|+||++++++|+|+++++|+++++
T Consensus 321 ~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 321 APLTAIVLVLELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp -HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999876
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=2.7e-52 Score=456.77 Aligned_cols=374 Identities=43% Similarity=0.661 Sum_probs=314.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhh
Q 005685 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH---------GLLEILNQIK 168 (683)
Q Consensus 98 G~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~---------g~~~v~~~i~ 168 (683)
|+++|+++.+|++.+++.++++|...+.... ....+|+++++.|++|+++++++. |+++++..++
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~ 74 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELA------AGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIA 74 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccc------cccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHH
Confidence 6789999999999999999998875443210 011234456788999999998863 3455555555
Q ss_pred cCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCCHHHHHHHHHhhhhhhhhhhcc
Q 005685 169 QSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFN 248 (683)
Q Consensus 169 ~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~GaaAGiaa~F~ 248 (683)
... +....+..+.|++++++++++|+|+|||||++|+|+++|++++++++.++++++.+++||+|||++++||
T Consensus 75 ~~~-------~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~~~~~~~~l~~~G~aaglaa~f~ 147 (383)
T cd00400 75 LGG-------GRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRLSRNDRRILVACGAAAGIAAAFN 147 (383)
T ss_pred hCC-------CCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 321 1233456678999999999999999999999999999999999999988777778999999999999999
Q ss_pred cccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHHHHHHHHHHHH
Q 005685 249 AAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVV 328 (683)
Q Consensus 249 aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~l 328 (683)
||++|++|++|++.+++..+. ..++++++++++++++.+.++++.|.++.....++.++++++++|++||++|.+
T Consensus 148 aPl~g~lf~~E~~~~~~~~~~-----~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~il~Gv~~g~~g~~ 222 (383)
T cd00400 148 APLAGALFAIEVLLGEYSVAS-----LIPVLLASVAAALVSRLLFGAEPAFGVPLYDPLSLLELPLYLLLGLLAGLVGVL 222 (383)
T ss_pred ChhHHHHHHHHHHHHhccHHH-----HHHHHHHHHHHHHHHHHHcCCCCeeeCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987765432 456899999999999999999988888766667889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCCCCchHHHHHHHHHHHHHH
Q 005685 329 FTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVA 408 (683)
Q Consensus 329 f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~~~~~~~~L~~~~~~K~~~ 408 (683)
|++...+++++++++ +.++++++.++|++++++.+++|+..|+|++.+++..++. .+...+..+++.|+++
T Consensus 223 f~~~~~~~~~~~~~~----~~~~~~~~~i~gll~~~~~~~~p~~~g~G~~~~~~~~~~~-----~~~~~l~~~~~~K~~~ 293 (383)
T cd00400 223 FVRLLYKIERLFRRL----PIPPWLRPALGGLLLGLLGLFLPQVLGSGYGAILLALAGE-----LSLLLLLLLLLLKLLA 293 (383)
T ss_pred HHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHcCC-----hhHHHHHHHHHHHHHH
Confidence 999999998877643 3456788999999999999999999999999888776432 2345567788999999
Q ss_pred HHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhC
Q 005685 409 TALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR 488 (683)
Q Consensus 409 t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg 488 (683)
|.+|+++|++||.|.|++++||++|+.+++++..+ +|. ...++..|+++||+|++++++|+|+|++++++|+||
T Consensus 294 t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~----~~~--~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg 367 (383)
T cd00400 294 TALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPAL----FPG--LVASPGAYALVGMAALLAAVLRAPLTAILLVLELTG 367 (383)
T ss_pred HHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh----CCc--ccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhC
Confidence 99999999999999999999999999999887654 332 235799999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHH
Q 005685 489 DYRILLPLMGAVGLAI 504 (683)
Q Consensus 489 ~~~~l~P~~~a~~~a~ 504 (683)
+++.++|+|+++++||
T Consensus 368 ~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 368 DYSLLLPLMLAVVIAY 383 (383)
T ss_pred ChhhHHHHHHHHHhcC
Confidence 9999999999998874
No 17
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=2e-51 Score=449.82 Aligned_cols=383 Identities=17% Similarity=0.224 Sum_probs=296.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005685 85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEIL 164 (683)
Q Consensus 85 ~~~~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~g~~~v~ 164 (683)
+....+++.++++|+++|+++++|++++++.++++|...+... +. . ...+|| .+++|++||+++|++....
T Consensus 7 ~~~~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~-~~---~-~~~~~~-~~~~~~~gGllvgll~~~~--- 77 (414)
T PRK03655 7 RTMLLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTL-GI---A-QDSPLW-IIGMLTLTGIAVGLVIRFS--- 77 (414)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cc---c-cccchH-HHHHHHHHHHHHHHHHHHc---
Confidence 4456788999999999999999999999999999998765321 10 0 112343 4577999999999984221
Q ss_pred HhhhcCCcccccC--cccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCCHHHHHHHHHhhhhhh
Q 005685 165 NQIKQSSSLDRQG--FDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASG 242 (683)
Q Consensus 165 ~~i~~~~~~~~~g--~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~GaaAG 242 (683)
+. ++..+++.++ ....+.+....|++++++++++|+|+|||||+||+|++++++++|+++.+.+ ++.++.||+|||
T Consensus 78 ~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~~~~-~~~l~~~gaAaG 155 (414)
T PRK03655 78 PG-HAGPDPATEPLIGAPVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVN-RMDWTILASAGT 155 (414)
T ss_pred CC-CCCChHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHH
Confidence 00 0000110000 0112234456789999999999999999999999999999999998853333 334678999999
Q ss_pred hhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHHHHHH
Q 005685 243 IASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLC 322 (683)
Q Consensus 243 iaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~ 322 (683)
+||+||||++|++|++|++++++....+.. ..+.++++++++.+++.+++....|.+++++..+..++++++++|++|
T Consensus 156 iaAaFnaPLaG~lFa~E~l~~~~~~~~~~~--~~~~v~aa~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lgi~~ 233 (414)
T PRK03655 156 IGALFGTPVAAALIFSQTLNGSNEVPLWDR--LFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIA 233 (414)
T ss_pred HHHHhCchHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHhCCCCcceecCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988766421101 122356777788888877654444456666666778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhc-ccccccChHHHHHHHhcCCCCCCchHHHHHHH
Q 005685 323 GVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY-PGILYWGFTNVEEILHTGKTASAPGIWLLTQL 401 (683)
Q Consensus 323 Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~-P~~lg~G~~~i~~~l~~~~~~~~~~~~~L~~~ 401 (683)
|++|.+|++...++++++++. +.| ++++.++|+++++++++. |+++|+||+++++++++++ ...+.++.+
T Consensus 234 gl~G~lf~~~~~~~~~~~~~~----~~p-~~~~~lgGl~vg~l~l~~~~~~~g~Gy~~i~~~~~~~~----~~~~~ll~l 304 (414)
T PRK03655 234 IAAGMVAVWCLPRLHALMHRL----KNP-VLVLGIGGFILGILGVIGGPLTLFKGLDEMQQMAANQA----FSASDYFLL 304 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----ccc-hHHHHHHHHHHHHHHHHhCCccccCCHHHHHHHHhcCC----ccHHHHHHH
Confidence 999999999998888777543 344 356789999999999886 7789999999998876532 345677778
Q ss_pred HHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhc----chH
Q 005685 402 AAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS----VPL 477 (683)
Q Consensus 402 ~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~----~Pl 477 (683)
+++|+++|.+|+++|++||+|+|++++||++|..++.+ +|+ .++...+++||+|++++++| +|+
T Consensus 305 ~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l--------~p~----~~~~~~v~~~m~a~la~vtr~p~~sp~ 372 (414)
T PRK03655 305 AVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH--------VPA----VPAAITVSCAILGIVLVVTRDGWLSLF 372 (414)
T ss_pred HHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh--------ccC----CChHHHHHHHHHHHHHHHhccchhhHH
Confidence 99999999999999999999999999999999888753 332 35778899999999999999 699
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 005685 478 TSVLLLFELTRDYRILLPLMGAVGLAIWV 506 (683)
Q Consensus 478 t~ivi~~Eltg~~~~l~P~~~a~~~a~~v 506 (683)
|++++++||| ++|+|++++++.|+
T Consensus 373 ta~viv~em~-----~~~l~~~~~~~~~~ 396 (414)
T PRK03655 373 MAAVVVPDTT-----LLPLLCIVMLPAWL 396 (414)
T ss_pred HHHHHHhcch-----HHHHHHHHHHHHHH
Confidence 9999999999 89999999888776
No 18
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.1e-50 Score=442.06 Aligned_cols=360 Identities=22% Similarity=0.305 Sum_probs=292.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 005685 94 GCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH--------GLLEILN 165 (683)
Q Consensus 94 ~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~--------g~~~v~~ 165 (683)
++++|+++|+++++|++.+++.+++.+. .+|+ .+.+|+.|.++..+.+ |.+++++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----------------~~~~-~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~ 64 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----------------HPWL-LPFLPLAGLLIGYLYQKFGKNSEKGNNLIIE 64 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhHH-HHHHHHHHHHHHHHHHHhCcccCCChHHHHH
Confidence 6899999999999999999999987542 2343 3455765544444432 3556666
Q ss_pred hhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCCHHHHHHHHHhhhhhhhhh
Q 005685 166 QIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIAS 245 (683)
Q Consensus 166 ~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~GaaAGiaa 245 (683)
.++++. +..+.+....|++++.+++++|+|+|||||++|+|++++++++|+++.+++++|.+++||+|||++|
T Consensus 65 ~~~~~~-------~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~~~~~~r~l~~~g~aAglaa 137 (378)
T cd03682 65 EIHGPE-------EGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKLPEEDRRILLIAGIAAGFAA 137 (378)
T ss_pred HHHccC-------CCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 665431 1222345568999999999999999999999999999999999999988877778999999999999
Q ss_pred hcccccchhhhheeccc-ccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHHHHHHHH
Q 005685 246 GFNAAVAGCFFAIETVL-RPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGV 324 (683)
Q Consensus 246 ~F~aPi~G~lFa~E~~~-~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl 324 (683)
+||||++|++|++|+++ ++++.+. ..+++++|++++.+++.+...++.|.++.....++.++++++++|++||+
T Consensus 138 ~f~aPl~g~~f~~E~~~~~~~~~~~-----~~~~~i~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~Gi~~gl 212 (378)
T cd03682 138 VFGTPLAGAIFALEVLVLGRLRYSA-----LIPCLVAAIVADWVSHALGLEHTHYHIVFIPTLDPLLFVKVILAGIIFGL 212 (378)
T ss_pred HhCCcHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHHHHHHhCCCCCccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999986 4444332 35678999999999987766666676654444577899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhc--ccccccChHHHHHHHhcCCCCCCchHHHHHHHH
Q 005685 325 VSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY--PGILYWGFTNVEEILHTGKTASAPGIWLLTQLA 402 (683)
Q Consensus 325 ~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~--P~~lg~G~~~i~~~l~~~~~~~~~~~~~L~~~~ 402 (683)
+|.+|++...+.++++++. ..+.++++.++|++++++.++. |+..|.|++.+++.+.+++ .. ....
T Consensus 213 ~g~~f~~~~~~~~~~~~~~----~~~~~~~~~iggl~~g~~~~~~~~~~~~G~g~~~i~~~~~~~~----~~----~~~~ 280 (378)
T cd03682 213 AGRLFAELLHFLKKLLKKR----IKNPYLRPFVGGLLIILLVYLLGSRRYLGLGTPLIEDSFFGGT----VY----PYDW 280 (378)
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHhcCC----ch----HHHH
Confidence 9999999999998887643 2455788999999999988775 4577999998887343332 11 1235
Q ss_pred HHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcchHHHHHH
Q 005685 403 AAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLL 482 (683)
Q Consensus 403 ~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi 482 (683)
+.|+++|.+|+|+|++||.|.|++++||++|+++++++. .++..|+++||+|++++++|+|+|++++
T Consensus 281 l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~-------------~~~~~~~~~Gmaa~laa~~raPlt~ivl 347 (378)
T cd03682 281 LLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG-------------LPVSLLAALGFVAVFAGATNTPLACIIM 347 (378)
T ss_pred HHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 799999999999999999999999999999999987531 2467999999999999999999999999
Q ss_pred HHHHhCCchhHHHHHHHHHHHHHHHH
Q 005685 483 LFELTRDYRILLPLMGAVGLAIWVPS 508 (683)
Q Consensus 483 ~~Eltg~~~~l~P~~~a~~~a~~v~~ 508 (683)
++|+|+ ++.++|+|+++++|+.+++
T Consensus 348 ~~Eltg-~~~~~p~~ia~~ia~~~~~ 372 (378)
T cd03682 348 GIELFG-AENAPYFFIACLVAYLFSG 372 (378)
T ss_pred HHHHhC-ccchHHHHHHHHHHHHHhC
Confidence 999999 5778899999999999864
No 19
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.74 E-value=2.2e-16 Score=182.05 Aligned_cols=178 Identities=16% Similarity=0.159 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005685 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQI 167 (683)
Q Consensus 88 ~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~g~~~v~~~i 167 (683)
+..+.+.+++|+++|+++.+|.+.+++.++++-. . ..++ ++.+++||+++|++.. ..+++
T Consensus 236 ~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~-~-------------~~~~---~~~~~~~gl~~g~l~~---~~p~~ 295 (574)
T PRK01862 236 GWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKR-L-------------PVPL---PVRLALGGLLVGVISV---WVPEV 295 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-------------CCch---hHHHHHHHHHHHHHHH---HHHHH
Confidence 3445677999999999999999999988775421 1 1111 2235678888887621 11222
Q ss_pred hcCCcccccCc---ccc---cchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhc----CCHHHHHHHHHh
Q 005685 168 KQSSSLDRQGF---DLV---AGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME----NNRERKIALVAA 237 (683)
Q Consensus 168 ~~~~~~~~~g~---~~~---~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~----~~~~~r~~l~~~ 237 (683)
.+.+....+.. +.. -....+.|++.+.+++++|++.|.++|+..+|+++|+.+++.++ ......-.+..+
T Consensus 296 ~g~G~~~i~~~~~~~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~v 375 (574)
T PRK01862 296 WGNGYSVVNTILHAPWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHTSAPFAYAMV 375 (574)
T ss_pred hcCCHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHH
Confidence 22221110000 000 01234689999999999999999999999999999999998653 222222236679
Q ss_pred hhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhc
Q 005685 238 GAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL 293 (683)
Q Consensus 238 GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~ 293 (683)
|+||.+|+++++|+++++|++|.+.. + . ...|++++|++|+.+++.+.
T Consensus 376 Gmaa~~aa~~~aPlt~i~l~~Elt~~-~--~-----~~~P~~ia~~~a~~v~~~~~ 423 (574)
T PRK01862 376 GMGAFLAGATQAPLMAILMIFEMTLS-Y--Q-----VVLPLMVSCVVAYFTARALG 423 (574)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHhCC-H--h-----HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999997522 1 1 24568899999999998653
No 20
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.66 E-value=1.9e-15 Score=165.87 Aligned_cols=178 Identities=26% Similarity=0.312 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-h---cCCch---hHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCCC
Q 005685 319 GMLCGVVSVVFTRLVAWFTKSFDFIKE-K---FGLPP---VVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTAS 391 (683)
Q Consensus 319 Gil~Gl~g~lf~~~~~~~~~~~~~~~~-~---~~~~~---~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~~ 391 (683)
|+++|+.+.+|.++.++.++++.+... . ...++ .+.+.+++++++++..+.|...+.|.+++.+.++....
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~~~~~-- 78 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIALGGG-- 78 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHhCCC--
Confidence 688999999999999999988754321 1 01222 35677888888888877776778899998777764332
Q ss_pred CchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHH
Q 005685 392 APGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLAS 471 (683)
Q Consensus 392 ~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~ 471 (683)
..+ ....+.|++.+.+++++|.++|.+.|++++|+++|..+++.++. + ..+...+..+||+|.+++
T Consensus 79 ~~~----~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~------~----~~~~~~l~~~G~aaglaa 144 (383)
T cd00400 79 RLP----LRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL------S----RNDRRILVACGAAAGIAA 144 (383)
T ss_pred CCC----HHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC------C----HHHHHHHHHHHHHHHHHH
Confidence 122 22457899999999999999999999999999999999875421 1 135778999999999999
Q ss_pred hhcchHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHHHhhh
Q 005685 472 VCSVPLTSVLLLFELTRDYR---ILLPLMGAVGLAIWVPSVANQ 512 (683)
Q Consensus 472 ~~~~Plt~ivi~~Eltg~~~---~l~P~~~a~~~a~~v~~~~~~ 512 (683)
++++|++++++++|++++.. .+.|+++++.+++.+++.++.
T Consensus 145 ~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~ 188 (383)
T cd00400 145 AFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLFG 188 (383)
T ss_pred hcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999997554 799999999999999998754
No 21
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.63 E-value=3.1e-15 Score=150.18 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhC-------Cch-hHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhcCC
Q 005685 457 PQAYALVGMAATLASVCSVPLTSVLLLFELTR-------DYR-ILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGY 528 (683)
Q Consensus 457 ~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg-------~~~-~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~y 528 (683)
.+.....+++++++--|-.|-++++-+.-+.| +|. .+.|+.+.+++-..++..||+. ..+.|
T Consensus 109 ~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~lynnl----------~~r~Y 178 (382)
T COG3448 109 SGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALLYNNL----------TRRTY 178 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHHHHHHH----------hcCCC
Confidence 34556677888888888888777777666655 233 7899999999999998888853 46778
Q ss_pred CCCCC-------ccchhhhHhhccCCccch--hhhhhhcccc-chhHHHHHHHHHHhhhc--CCcccccccccccCceee
Q 005685 529 SSLSP-------MEDKNEVLWRRTDGADEL--ELSVVENAAD-SEAAEEMLLEELKLLQF--SIPPCQVSRAMSKDFVKV 596 (683)
Q Consensus 529 p~~~~-------~~~~~~~~~~~~~~~~~~--~L~~~~~~~~-~~~~~~~~L~~l~~~~~--~~~~~~V~diM~~~~~~v 596 (683)
|.... -..+.-+..|.....+|+ .|..+++-.| .+++.+.++++.+.+++ +..+.++.|+|+++++++
T Consensus 179 Ph~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSrdVvtv 258 (382)
T COG3448 179 PHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSRDVVTV 258 (382)
T ss_pred CCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCccceec
Confidence 86211 111111122222222222 2556666666 67777888888887766 677888999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 597 ALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 597 ~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
+++++++++++.|++++.+.+||+|++.+++|+||+.|+.+.
T Consensus 259 ~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 259 STDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH 300 (382)
T ss_pred CCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence 999999999999999999999999999999999999999995
No 22
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.63 E-value=3.8e-15 Score=164.42 Aligned_cols=178 Identities=28% Similarity=0.301 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-CchhH----HHhhhHHHHHHHHhh-cccccccChHHHHHHHhcCCCC
Q 005685 318 LGMLCGVVSVVFTRLVAWFTKSFDFIKEKF-G-LPPVV----CPALGGLGAGIIALR-YPGILYWGFTNVEEILHTGKTA 390 (683)
Q Consensus 318 lGil~Gl~g~lf~~~~~~~~~~~~~~~~~~-~-~~~~~----~~~iggl~~g~i~~~-~P~~lg~G~~~i~~~l~~~~~~ 390 (683)
+|+++|+++.+|.+.+.+.++++.+..+.. . .+.++ .+.++|++++.+..+ .|+..|.|++++++.++.....
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~~~ 80 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLLPP 80 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCCCc
Confidence 488999999999999999998876543211 1 11222 223445666665544 7999999999999888654321
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHH
Q 005685 391 SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLA 470 (683)
Q Consensus 391 ~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a 470 (683)
. .....+.|++.+.+|+++|.++|.+.|++++|+++|..+++.+.. ...+...+..+||+|.++
T Consensus 81 --~----~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~----------~~~~~~~l~~~g~aag~a 144 (402)
T cd01031 81 --N----WWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT----------SPEERRQLIAAGAAAGLA 144 (402)
T ss_pred --c----cHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHhHH
Confidence 1 123567999999999999999999999999999999999875421 113578899999999999
Q ss_pred HhhcchHHHHHHHHH-HhCCc--hhHHHHHHHHHHHHHHHHHhh
Q 005685 471 SVCSVPLTSVLLLFE-LTRDY--RILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 471 ~~~~~Plt~ivi~~E-ltg~~--~~l~P~~~a~~~a~~v~~~~~ 511 (683)
+++++|++++++.+| +++++ +.+.|+++++++++.+++.+.
T Consensus 145 a~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~~ 188 (402)
T cd01031 145 AAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLFF 188 (402)
T ss_pred HHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999 66654 479999999999999988764
No 23
>PRK05277 chloride channel protein; Provisional
Probab=99.62 E-value=1.2e-14 Score=162.01 Aligned_cols=185 Identities=21% Similarity=0.218 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCchhHHHhhhHHHHHHHH-----hhcccccccChHHHHHHH
Q 005685 313 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKF---GLPPVVCPALGGLGAGIIA-----LRYPGILYWGFTNVEEIL 384 (683)
Q Consensus 313 ~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~---~~~~~~~~~iggl~~g~i~-----~~~P~~lg~G~~~i~~~l 384 (683)
.+.+++|+++|+++.+|.+.++++++++....... .++.|..+.+.+.+.+.++ .+.|+..|+|++++++.+
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l 81 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGAL 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 46789999999999999999999998876543221 1222333333333333332 245888999999999888
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHH
Q 005685 385 HTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVG 464 (683)
Q Consensus 385 ~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG 464 (683)
++.+. +.. ......|++.+.+++|+|.++|.++|++++|+++|..+++.++. .. ..+...+..+|
T Consensus 82 ~~~~~---~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~-----~~----~~~~~~li~~G 146 (438)
T PRK05277 82 EGLRP---VRW---WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRL-----RS----DEARHTLLAAG 146 (438)
T ss_pred cCCCc---cch---HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHccc-----CC----HHHHHHHHHHH
Confidence 64432 211 12347899999999999999999999999999999999875431 01 12567899999
Q ss_pred HHHHHHHhhcchHHHHHHHHH-HhCC--c--hhHHHHHHHHHHHHHHHHHhhh
Q 005685 465 MAATLASVCSVPLTSVLLLFE-LTRD--Y--RILLPLMGAVGLAIWVPSVANQ 512 (683)
Q Consensus 465 ~aA~~a~~~~~Plt~ivi~~E-ltg~--~--~~l~P~~~a~~~a~~v~~~~~~ 512 (683)
|+|.+++++++|++++++++| ++++ + ..+.|+++++++++.+.+.++.
T Consensus 147 ~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g 199 (438)
T PRK05277 147 AAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFNG 199 (438)
T ss_pred HHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999 5553 2 3578999999999999887753
No 24
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.57 E-value=5.3e-14 Score=154.67 Aligned_cols=183 Identities=17% Similarity=0.204 Sum_probs=129.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-------
Q 005685 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH------- 158 (683)
Q Consensus 86 ~~~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~------- 158 (683)
..|..++..+++|+++|+++.+|.+.+++.+++.-... . . .++...++.+.++|++++++.
T Consensus 197 ~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~--------~---~-~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 264 (390)
T cd01034 197 PLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWV--------R---R-FRRRRPVLFAALCGLALALIGLVSGGLT 264 (390)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------h---c-ccchhhHHHHHHHHHHHHHHHHhCCCcc
Confidence 34666788999999999999999999888877542210 0 0 001112233444555554431
Q ss_pred ---HHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCCHHHHHHHH
Q 005685 159 ---GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALV 235 (683)
Q Consensus 159 ---g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~r~~l~ 235 (683)
|...+.+..++.. + ......+.|++.+.+++++|.+.|+|+|++++|+++|+.++++++.. +...++
T Consensus 265 ~G~G~~~i~~~~~~~~-------~-~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~~--~~~~~a 334 (390)
T cd01034 265 FGTGYLQARAALEGGG-------G-LPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGSV--SQGALV 334 (390)
T ss_pred ccCcHHHHHHHHhCCC-------c-ccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcCC--CchHHH
Confidence 2222222222110 1 12345578999999999999999999999999999999999998752 233688
Q ss_pred HhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccc
Q 005685 236 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAF 299 (683)
Q Consensus 236 ~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f 299 (683)
.+|+||++++++|+|+++++|++|++.. + + ...++++++++|+.+++.+ +.++.|
T Consensus 335 ~~G~aA~laa~~~aPlt~~vl~~Elt~~-~--~-----~l~p~lia~~~A~~v~~~~-~~~~iY 389 (390)
T cd01034 335 LLGMAAFLAGVTQAPLTAFVIVMEMTGD-Q--Q-----MLLPLLAAALLASGVSRLV-CPEPLY 389 (390)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhCC-h--h-----hHHHHHHHHHHHHHHHHHh-CCCCCC
Confidence 9999999999999999999999998742 1 1 1356889999999999976 444544
No 25
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.54 E-value=5.7e-14 Score=154.09 Aligned_cols=177 Identities=18% Similarity=0.121 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005685 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQI 167 (683)
Q Consensus 88 ~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~~g~~~v~~~i 167 (683)
|..+...+++|+++|+++.+|++.+++.++++.. .. ++ +..|.+||+++|++.. ..+++
T Consensus 202 ~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~--------------~~-~~---~~~~~l~gl~~g~~~~---~~p~~ 260 (388)
T cd01033 202 TPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPK--------------GK-RI---LWQMPLAFLVIGLLSI---FFPQI 260 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------cc-ch---HHHHHHHHHHHHHHHH---HHHHH
Confidence 6667788999999999999999999988875411 00 11 1235678888877521 12222
Q ss_pred hcCCcccccCc---cc---ccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcC--CHHHHHHHHHhhh
Q 005685 168 KQSSSLDRQGF---DL---VAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN--NRERKIALVAAGA 239 (683)
Q Consensus 168 ~~~~~~~~~g~---~~---~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~--~~~~r~~l~~~Ga 239 (683)
.+++....+.. ++ ......+.|++.+.+++++|.|.|.|+|++++|+++|+.+++.++. +......++.||+
T Consensus 261 ~G~G~~~i~~~~~~~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~a~~Gm 340 (388)
T cd01033 261 LGNGRALAQLAFSTTLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPPLSIAAFALIGA 340 (388)
T ss_pred hCCcHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 22221110000 00 0123456899999999999999999999999999999999987642 2222346889999
Q ss_pred hhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhh
Q 005685 240 ASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL 292 (683)
Q Consensus 240 aAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l 292 (683)
||.+++++|||+++++|++|++-.++ + ...|++++|++|+.++|.+
T Consensus 341 aA~laa~~~aPlt~ivl~~Eltg~~~--~-----~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 341 AAFLAATQKAPLTALILVLEFTRQNP--L-----FLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCCH--H-----HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999743222 1 2456899999999999865
No 26
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.53 E-value=3.4e-13 Score=147.68 Aligned_cols=176 Identities=22% Similarity=0.338 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCCCCch
Q 005685 315 YLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPG 394 (683)
Q Consensus 315 ~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~~~~~ 394 (683)
.+++|+++|+++.+|++++.++++++.+ + .+. .....++|++++.+...+|+..+.|.+++.+.++..+.. .+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~--~--~~~-~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~~~~~~~~~--~~ 74 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA--H--PWL-LPFLPLAGLLIGYLYQKFGKNSEKGNNLIIEEIHGPEEG--IP 74 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--h--hHH-HHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHccCCC--Cc
Confidence 4789999999999999999999887542 1 111 122235566777777778877777888887777643321 11
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhc
Q 005685 395 IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS 474 (683)
Q Consensus 395 ~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~ 474 (683)
. ...+.|++.+.+++++|.|.|.+.|++.+|+.+|..+++.+. .+ ..+...+..+||+|.++++++
T Consensus 75 ~----~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~------~~----~~~~r~l~~~g~aAglaa~f~ 140 (378)
T cd03682 75 L----RMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFK------LP----EEDRRILLIAGIAAGFAAVFG 140 (378)
T ss_pred h----HHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhC------CC----HHHHHHHHHHHHHHHHHHHhC
Confidence 1 134569999999999999999999999999999999987532 11 124567899999999999999
Q ss_pred chHHHHHHHHHHh--C--CchhHHHHHHHHHHHHHHHHHhh
Q 005685 475 VPLTSVLLLFELT--R--DYRILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 475 ~Plt~ivi~~Elt--g--~~~~l~P~~~a~~~a~~v~~~~~ 511 (683)
+|++++++.+|.+ + +++.++|.++++++++.+++.+.
T Consensus 141 aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~ 181 (378)
T cd03682 141 TPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG 181 (378)
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999997 3 35678899999999999987664
No 27
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.48 E-value=3.8e-13 Score=150.83 Aligned_cols=193 Identities=17% Similarity=0.171 Sum_probs=138.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhc---CC-c----hhHHHhhhHHHHHHHHh-hcccccccChHH
Q 005685 310 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIK-EKF---GL-P----PVVCPALGGLGAGIIAL-RYPGILYWGFTN 379 (683)
Q Consensus 310 ~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~-~~~---~~-~----~~~~~~iggl~~g~i~~-~~P~~lg~G~~~ 379 (683)
..+...+++|+++|+++.+|.++++++++++.... +.. .. . ....++++|++.+++.. +.|+..|+|.++
T Consensus 31 ~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~ 110 (466)
T cd03685 31 LKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPE 110 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHH
Confidence 44556799999999999999999999988753321 111 00 1 11344566677777655 459999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHH-------HHHhhhCCCCc
Q 005685 380 VEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAA-------EIINSAIPGNV 452 (683)
Q Consensus 380 i~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~-------~~~~~~~p~~~ 452 (683)
++..+++.+.+...+ ....+.|++.+.+++|+|.|.|.++|++.+||++|..+++... .+++. +..
T Consensus 111 v~~~l~g~~~~~~l~----~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~-~~~-- 183 (466)
T cd03685 111 VKGYLNGVKIPHILR----LKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY-FRN-- 183 (466)
T ss_pred HHHHHcCcCccccch----HHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh-ccC--
Confidence 998886433221112 2245689999999999999999999999999999999986321 01111 111
Q ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHh
Q 005685 453 AVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR---DYRILLPLMGAVGLAIWVPSVA 510 (683)
Q Consensus 453 ~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg---~~~~l~P~~~a~~~a~~v~~~~ 510 (683)
..+...+..+||||.+++++++|++++++++|.+. +.+...+.++++++|..+++.+
T Consensus 184 -~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~~ 243 (466)
T cd03685 184 -DRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFF 243 (466)
T ss_pred -HHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 13556799999999999999999999999999875 3345566666666666666554
No 28
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.47 E-value=1.8e-12 Score=143.49 Aligned_cols=183 Identities=23% Similarity=0.284 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhh-cCCch---hHHHhhhHHHHHHHHhhc-c--cccccChH
Q 005685 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDF-----IKEK-FGLPP---VVCPALGGLGAGIIALRY-P--GILYWGFT 378 (683)
Q Consensus 311 ~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~-----~~~~-~~~~~---~~~~~iggl~~g~i~~~~-P--~~lg~G~~ 378 (683)
.+...+++|+++|+.+.+|.+.++++++++-. +.+. ...++ ++.|++||+++|++.+.+ | +..++|.+
T Consensus 4 ~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~~ 83 (418)
T PRK01610 4 RLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPHAPT 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCCCcH
Confidence 45566899999999999999999888664311 1000 01222 344667888888876544 3 34566777
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchH
Q 005685 379 NVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQ 458 (683)
Q Consensus 379 ~i~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~ 458 (683)
++.+..++ +.. .+.. ..+.|++.+.+++|+|.|.|.+.|+.++|+++|..+++.+. + ..+..
T Consensus 84 ~vi~av~~-~g~--~~~~----~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~-------~----~~~~r 145 (418)
T PRK01610 84 DYMEALQT-DGQ--FDYA----ASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT-------P----RQEWK 145 (418)
T ss_pred HHHHHHHc-CCC--CCcc----HHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC-------C----hHHHH
Confidence 77776665 211 2222 24589999999999999999999999999999999987542 1 13567
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHh-C--CchhHHHHHHHHHHHHHHHHHhh
Q 005685 459 AYALVGMAATLASVCSVPLTSVLLLFELT-R--DYRILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 459 ~~alvG~aA~~a~~~~~Plt~ivi~~Elt-g--~~~~l~P~~~a~~~a~~v~~~~~ 511 (683)
.+..||++|.+++++++|++++++.+|.. + .+..+.|++++++++..+++.+.
T Consensus 146 ~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~~ 201 (418)
T PRK01610 146 LWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLLN 201 (418)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999985 4 34578999999999999988774
No 29
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.40 E-value=4.9e-12 Score=140.80 Aligned_cols=182 Identities=27% Similarity=0.349 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hc--CCchhHHHhhhHHHHH--HHHhhcccccccChHHHHHHHhcCC
Q 005685 315 YLILGMLCGVVSVVFTRLVAWFTKSFDFIKE--KF--GLPPVVCPALGGLGAG--IIALRYPGILYWGFTNVEEILHTGK 388 (683)
Q Consensus 315 ~illGil~Gl~g~lf~~~~~~~~~~~~~~~~--~~--~~~~~~~~~iggl~~g--~i~~~~P~~lg~G~~~i~~~l~~~~ 388 (683)
..++|++.|+..........++......... +. .+.....+.++|++.| ++..+.|+.-|+|.+++.+.+++.+
T Consensus 26 ~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~~ 105 (443)
T COG0038 26 AAALGVIVGLFAVALDLALLLLGRLRGGLLSAAQAPGPWLLPLVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGRK 105 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcCC
Confidence 4455555555555555555555443321100 11 1112234567888888 4455779999999999999988643
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHH
Q 005685 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAAT 468 (683)
Q Consensus 389 ~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~ 468 (683)
.. ... .....|++.+.+++++|.+.|.+.|+.++|+.+|..+++.+.. ...+.....++|+||.
T Consensus 106 ~~--~~~----~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~----------~~~~~r~Ll~~GaAaG 169 (443)
T COG0038 106 GR--ISP----RVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKL----------SREDRRILLAAGAAAG 169 (443)
T ss_pred Cc--ccH----HHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHH
Confidence 21 222 2345699999999999999999999999999999999987532 1246788999999999
Q ss_pred HHHhhcchHHHHHHHHHHhC----CchhHHHHHHHHHHHHHHHHHhhh
Q 005685 469 LASVCSVPLTSVLLLFELTR----DYRILLPLMGAVGLAIWVPSVANQ 512 (683)
Q Consensus 469 ~a~~~~~Plt~ivi~~Eltg----~~~~l~P~~~a~~~a~~v~~~~~~ 512 (683)
+++++++|++++++++|+.. ++..+.|+++++++++.+...++.
T Consensus 170 laaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~~ 217 (443)
T COG0038 170 LAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFGG 217 (443)
T ss_pred HHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999873 346899999999999999988864
No 30
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.39 E-value=3.7e-12 Score=141.49 Aligned_cols=191 Identities=17% Similarity=0.134 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C------chhHHHhhhHHHHHHHHh-hcccccccChHHHHHHH
Q 005685 313 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG-L------PPVVCPALGGLGAGIIAL-RYPGILYWGFTNVEEIL 384 (683)
Q Consensus 313 ~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~-~------~~~~~~~iggl~~g~i~~-~~P~~lg~G~~~i~~~l 384 (683)
.+.+++|++.|+++.+|....++..+++.++.+... . .+.+.+++++++.+.+.. +.|+.-|+|-+++++.+
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l 82 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTIL 82 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHH
Confidence 345799999999999999999998877765433211 1 112334556666676664 68999999999998888
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHH
Q 005685 385 HTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVG 464 (683)
Q Consensus 385 ~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG 464 (683)
+..+.+...+ ....+.|++.+.+++++|.+-|.++|+.++||++|..+++..... ..... ...+...+..+|
T Consensus 83 ~g~~~~~~l~----~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~-~~~~~---~~~~rr~Li~~G 154 (426)
T cd03683 83 RGVVLPEYLT----FKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFF-SGIYE---NESRRMEMLAAA 154 (426)
T ss_pred cCCCcccccc----HHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccc-ccccc---CHHHHHHHHHhH
Confidence 6533222111 234678999999999999999999999999999999998754310 00000 112345689999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHhC-C--chhHHHHHHHHHHHHHHHHHhh
Q 005685 465 MAATLASVCSVPLTSVLLLFELTR-D--YRILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 465 ~aA~~a~~~~~Plt~ivi~~Eltg-~--~~~l~P~~~a~~~a~~v~~~~~ 511 (683)
+||.+++++++|++++++.+|... + .+.+.|.+++++++..+.+.++
T Consensus 155 aaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~ 204 (426)
T cd03683 155 CAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLA 204 (426)
T ss_pred hhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 3 3577899999999988877665
No 31
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.38 E-value=3.1e-12 Score=141.74 Aligned_cols=187 Identities=20% Similarity=0.204 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC------c-hhHHHhhhHHHHHHHH-hhcccccccChHHHHHHHhcCCCC
Q 005685 319 GMLCGVVSVVFTRLVAWFTKSFDFIKEKFGL------P-PVVCPALGGLGAGIIA-LRYPGILYWGFTNVEEILHTGKTA 390 (683)
Q Consensus 319 Gil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~------~-~~~~~~iggl~~g~i~-~~~P~~lg~G~~~i~~~l~~~~~~ 390 (683)
|++.|+++.+|..+.++..++++.+.++... . +...+.+.+++.+.+. .+.|+..|+|.++++..++..+.+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~ 80 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHLP 80 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCccc
Confidence 5677888888888888888877654332111 1 1223444555545544 478999999999998887643322
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHh------hhCCCCccccchHHHHHHH
Q 005685 391 SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIIN------SAIPGNVAVAEPQAYALVG 464 (683)
Q Consensus 391 ~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~------~~~p~~~~~~~~~~~alvG 464 (683)
..... ...+.|++.+.+++|+|.+.|.++|+.++||++|..+++......+ ..+. +..+...+..+|
T Consensus 81 ~~l~~----~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~---~~~~~r~ll~aG 153 (416)
T cd01036 81 MYLSI----RTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFR---NPRDRRDFLVAG 153 (416)
T ss_pred ccccH----HHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhcc---CHHHHHHHHHHH
Confidence 21222 2456899999999999999999999999999999999886432110 0001 123567899999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHhCC---chhHHHHHHHHHHHHHHHHHhhh
Q 005685 465 MAATLASVCSVPLTSVLLLFELTRD---YRILLPLMGAVGLAIWVPSVANQ 512 (683)
Q Consensus 465 ~aA~~a~~~~~Plt~ivi~~Eltg~---~~~l~P~~~a~~~a~~v~~~~~~ 512 (683)
++|.+++++++|++++++.+|.+.. ...+.|.+++++++..+++.+..
T Consensus 154 aaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~ 204 (416)
T cd01036 154 AAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNS 204 (416)
T ss_pred hhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998843 34789999999999999887754
No 32
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.35 E-value=1.8e-11 Score=136.74 Aligned_cols=181 Identities=19% Similarity=0.193 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHH-hhcccccccChHHHHHHHhcCCCCCCchHHH
Q 005685 319 GMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIA-LRYPGILYWGFTNVEEILHTGKTASAPGIWL 397 (683)
Q Consensus 319 Gil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~-~~~P~~lg~G~~~i~~~l~~~~~~~~~~~~~ 397 (683)
|++.|+++..+....+|..+.+...... ..+...+.+.+++++.+. .+.|..-|+|-++++..++........+.+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~~~- 77 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYCNY--IIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFIIRGFLGKW- 77 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccccccccHH-
Confidence 6888999999999998888766432210 111223345566666665 567999999999998888642222222222
Q ss_pred HHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHhhcchH
Q 005685 398 LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPL 477 (683)
Q Consensus 398 L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Pl 477 (683)
..+.|++.+.+++++|.+.|.++|+.++||++|..+++++... + . +..+...+..+|+||.+++++++|+
T Consensus 78 ---~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~-~---~---~~~~~r~li~~GaaAGlaAaF~APi 147 (445)
T cd03684 78 ---TLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKY-R---R---NEAKRREILSAAAAAGVAVAFGAPI 147 (445)
T ss_pred ---HHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHh-c---c---CHHHHHHHHHHHHhhhhHHhcCCcc
Confidence 4568999999999999999999999999999999998765321 0 1 1235678899999999999999999
Q ss_pred HHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHhhh
Q 005685 478 TSVLLLFELTR---DYRILLPLMGAVGLAIWVPSVANQ 512 (683)
Q Consensus 478 t~ivi~~Eltg---~~~~l~P~~~a~~~a~~v~~~~~~ 512 (683)
+++++.+|... +.+.+.|.++++++|..+.+.++.
T Consensus 148 ~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~~ 185 (445)
T cd03684 148 GGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNP 185 (445)
T ss_pred chhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999763 345789999999999999887643
No 33
>PRK03655 putative ion channel protein; Provisional
Probab=99.26 E-value=3.2e-10 Score=125.11 Aligned_cols=180 Identities=14% Similarity=0.167 Sum_probs=125.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc---CC-ch--hHHHhhhHHHHHHHHhhcccccccChHHHHH
Q 005685 310 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKE-KF---GL-PP--VVCPALGGLGAGIIALRYPGILYWGFTNVEE 382 (683)
Q Consensus 310 ~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~-~~---~~-~~--~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~ 382 (683)
.-+...+++|+++|+.+.+|.+++.+.++++-.... .. .. ++ ...+.++|+++|++..+.|..-+. +..++
T Consensus 11 ~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~~G~-~~~~~- 88 (414)
T PRK03655 11 LLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGHAGP-DPATE- 88 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCCCCC-hHHHH-
Confidence 445677899999999999999999999887542110 00 11 11 223568899999998777755333 22233
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHH
Q 005685 383 ILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYAL 462 (683)
Q Consensus 383 ~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~al 462 (683)
..+.++ ... .....|++.+.+++++|.+-|.+.|++++||++|..+++.+. +. .+.....+
T Consensus 89 ~~~~~~----~~~----~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~-------~~----~~~~~l~~ 149 (414)
T PRK03655 89 PLIGAP----VPP----SALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLL-------PR----VNRMDWTI 149 (414)
T ss_pred HHhcCC----CCc----cHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc-------cC----CChhHHHH
Confidence 333332 111 234579999999999999999999999999999999987541 11 13445678
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHh-CCch------hHHHHHHHHHHHHHHHHHhh
Q 005685 463 VGMAATLASVCSVPLTSVLLLFELT-RDYR------ILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 463 vG~aA~~a~~~~~Plt~ivi~~Elt-g~~~------~l~P~~~a~~~a~~v~~~~~ 511 (683)
+|+||.+++++|+|++++++.+|.. +++. .+.|+ +++.++..++..++
T Consensus 150 ~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~~v~~~~~ 204 (414)
T PRK03655 150 LASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGALTTGLFF 204 (414)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 9999999999999999999999974 5443 24444 44555666655553
No 34
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.07 E-value=1e-09 Score=119.31 Aligned_cols=140 Identities=30% Similarity=0.378 Sum_probs=110.5
Q ss_pred hhHHHHHHHHhhc-ccccccChHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHH
Q 005685 357 LGGLGAGIIALRY-PGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAV 435 (683)
Q Consensus 357 iggl~~g~i~~~~-P~~lg~G~~~i~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~ 435 (683)
++|++++++..++ |+.-++|-+++.+.++..+.. .+ ....+.|++.+.+++++|.+.|.++|+..+|+++|..
T Consensus 1 ~~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~~~--~~----~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~ 74 (355)
T PF00654_consen 1 IGGLLSGLLWKKFAPEAAGSGIPEVKAALRGKSGR--LP----FRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSW 74 (355)
T ss_dssp -HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----H----HHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHCCccCCCCHHHHHHHHhCCCCC--CC----HHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHH
Confidence 4677888887777 999999999988888654421 22 2346789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCccccc-hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHhh
Q 005685 436 FGGSAAEIINSAIPGNVAVAE-PQAYALVGMAATLASVCSVPLTSVLLLFELTR---DYRILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 436 ~g~~~~~~~~~~~p~~~~~~~-~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg---~~~~l~P~~~a~~~a~~v~~~~~ 511 (683)
+++.+.. +. .+ ...+..+|++|.+++++++|++++++.+|... +...+.|.++++++++.+.+.+.
T Consensus 75 ~~~~~~~------~~----~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 144 (355)
T PF00654_consen 75 LGRRFRL------SR----NETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLF 144 (355)
T ss_dssp HHHHTT--------C----HHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcc------cc----hHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHc
Confidence 9875321 11 13 45699999999999999999999999999864 56799999999999999999885
Q ss_pred h
Q 005685 512 Q 512 (683)
Q Consensus 512 ~ 512 (683)
.
T Consensus 145 ~ 145 (355)
T PF00654_consen 145 G 145 (355)
T ss_dssp T
T ss_pred C
Confidence 4
No 35
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.81 E-value=1e-08 Score=80.52 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=52.6
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
|+|+|+++++++++++++.|+.+.|.+++.+.+||+|++++++|+||++|+++++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999999999999999999999999999999999999999999999999875
No 36
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.64 E-value=2.3e-08 Score=110.39 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=87.7
Q ss_pred CCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCC---cCCCCccc
Q 005685 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNS---KGDSIASD 655 (683)
Q Consensus 579 ~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~---v~~~~~~~ 655 (683)
.-++.+++|+|.++++++.++++.+|+.+.+++++.-..||||++++++|+||.+|+...++++..+.. .+....++
T Consensus 192 a~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G~~~~~~ 271 (451)
T COG2239 192 AEPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAGPLDVPD 271 (451)
T ss_pred CCcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcCCCCCch
Confidence 345667999999999999999999999999999999999999999999999999999999877665321 12223466
Q ss_pred cccccceeecchhhHHHHHHHHHhhh
Q 005685 656 VCNCCLTFLNSRSLSLLCLSISLLMT 681 (683)
Q Consensus 656 i~~~~v~~~~~r~~~l~~l~~~~~~~ 681 (683)
.....+...++|.+||++|+++.+.|
T Consensus 272 ~~~~v~~~~k~R~~WLlvll~~~~~t 297 (451)
T COG2239 272 LFASVLKLVKKRIPWLLVLLVTATLT 297 (451)
T ss_pred hccCHHHHHhhhHHHHHHHHHHHHHH
Confidence 67778889999999999999998765
No 37
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.50 E-value=1.3e-07 Score=106.18 Aligned_cols=101 Identities=22% Similarity=0.192 Sum_probs=79.3
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCc--CCCCc---cc
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK--GDSIA---SD 655 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v--~~~~~---~~ 655 (683)
++.+++++|.+++++++++++++|+.+.|+++++..+||+|++|+++|+||.+|+.+.+.++..+... .-... ..
T Consensus 193 ~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ed~~~~~gv~~~~~~~ 272 (449)
T TIGR00400 193 PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEATEDFYMIAAVKPLDDSY 272 (449)
T ss_pred CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhHHHHHHhcCCCCCcchh
Confidence 34569999999999999999999999999999999999999999999999999999997654432111 11111 11
Q ss_pred cccccceeecchhhHHHHHHHHHhhh
Q 005685 656 VCNCCLTFLNSRSLSLLCLSISLLMT 681 (683)
Q Consensus 656 i~~~~v~~~~~r~~~l~~l~~~~~~~ 681 (683)
..+......++|.+||+++++.++.+
T Consensus 273 l~~~~~~~~~~R~~wL~v~~~~~~~t 298 (449)
T TIGR00400 273 FDTSILVMAKNRIIWLLVLLVSSTFT 298 (449)
T ss_pred hhchHHHHHHhccchHHHHHHHHHHH
Confidence 23445567889999999999988765
No 38
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.44 E-value=2.5e-07 Score=92.43 Aligned_cols=80 Identities=28% Similarity=0.348 Sum_probs=71.6
Q ss_pred CCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCcccccc
Q 005685 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVCN 658 (683)
Q Consensus 579 ~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~~ 658 (683)
+.|..+|.++|++++.++.+++|++|+.+++.+++.++.||+|++ +++|++|..|+.+++.+...+..+.++|.+++.+
T Consensus 168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~~~~kV~~~M~k~vit 246 (294)
T COG2524 168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGNLDAKVSDYMRKNVIT 246 (294)
T ss_pred ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCCccccHHHHhccCCce
Confidence 567778999999999999999999999999999999999999975 8999999999999987776677888888877665
Q ss_pred c
Q 005685 659 C 659 (683)
Q Consensus 659 ~ 659 (683)
.
T Consensus 247 I 247 (294)
T COG2524 247 I 247 (294)
T ss_pred E
Confidence 3
No 39
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.27 E-value=1.6e-06 Score=77.86 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=52.7
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
...+++++|.+++++++++++++++++.|.+++.+.+||+|++++++|+|+++|+.+
T Consensus 57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 345689999999999999999999999999999999999998889999999999865
No 40
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.17 E-value=4e-06 Score=92.93 Aligned_cols=190 Identities=18% Similarity=0.229 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhh------cCCchhHHH----hhhHHHHHHHHhhccccccc
Q 005685 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSF-----DFIKEK------FGLPPVVCP----ALGGLGAGIIALRYPGILYW 375 (683)
Q Consensus 311 ~l~~~illGil~Gl~g~lf~~~~~~~~~~~-----~~~~~~------~~~~~~~~~----~iggl~~g~i~~~~P~~lg~ 375 (683)
-+..+.++|++.|++|.+-.-.+..+..+. ..+.++ +..+.+.+. .+..+...++.++.|-..|+
T Consensus 87 kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGS 166 (762)
T KOG0474|consen 87 KWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGS 166 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCC
Confidence 345677999999999988777666554331 111111 101111110 11111112234667999999
Q ss_pred ChHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHH-------HHHhhhC
Q 005685 376 GFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAA-------EIINSAI 448 (683)
Q Consensus 376 G~~~i~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~-------~~~~~~~ 448 (683)
|.+++...++.-+.+.... +..++.|++....+++.|...|-.+|++..||++|+.+++.=. .|++. |
T Consensus 167 GIPevK~YLNGV~iP~ivr----l~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~-F 241 (762)
T KOG0474|consen 167 GIPEVKCYLNGVKIPGIVR----LRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRY-F 241 (762)
T ss_pred CCchhhhhhcCccCcceee----hhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhh-h
Confidence 9999998886544333222 3345699999999999999999999999999999998876421 11111 1
Q ss_pred CCCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHHH
Q 005685 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDY---RILLPLMGAVGLAIWVPS 508 (683)
Q Consensus 449 p~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~---~~l~P~~~a~~~a~~v~~ 508 (683)
-. .-+..-+..+|+||..++++|||+.++++.+|--.++ .+++=++++++++.++-+
T Consensus 242 rn---DrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 242 RN---DRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred cc---cchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 11 2367789999999999999999999999999965433 355556666666555544
No 41
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.15 E-value=3.3e-06 Score=75.41 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=51.6
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 3488999999999999999999999999999999999998899999999999975
No 42
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.12 E-value=4e-06 Score=85.32 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=60.0
Q ss_pred CCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccC
Q 005685 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644 (683)
Q Consensus 579 ~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~ 644 (683)
..++.+++++|++++.++.++++..|++-.+.+.+..++||+|++|+++||||..|++.++-+++.
T Consensus 311 ~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 311 FLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred ccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence 446678999999999999999999999999999999999999999999999999999998655443
No 43
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.05 E-value=6.8e-06 Score=74.12 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=50.9
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+++|+|.+++.++++++++.++++.|.+++++.+||+|++++++|+|+.+|+.+
T Consensus 59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 399999999999999999999999999999999999998899999999999864
No 44
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.04 E-value=8.6e-06 Score=81.69 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=56.2
Q ss_pred CcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 580 IPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 580 ~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
..+.+|+|+|.+++++++.|+.+.|++++|.+++...+.|+|++|+.+|+||+.|+++.+
T Consensus 231 ~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i 290 (294)
T COG2524 231 NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290 (294)
T ss_pred CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence 345669999999999999999999999999999999999999999999999999999874
No 45
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.02 E-value=8.3e-06 Score=87.77 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=61.6
Q ss_pred cccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc--cCCCCcCCCCcccccc
Q 005685 584 QVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL--SSDNSKGDSIASDVCN 658 (683)
Q Consensus 584 ~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~--~~~~~v~~~~~~~i~~ 658 (683)
+|+|+|++ +++++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+++.+.+. +.+.++.+.|.+++.+
T Consensus 203 ~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~~~ 281 (326)
T PRK10892 203 RVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGGIR 281 (326)
T ss_pred cHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCCEE
Confidence 49999998 899999999999999999988888888899889999999999999876543 3334566666655443
No 46
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.96 E-value=1.5e-05 Score=74.41 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=62.1
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc---CCCCcCCCCcccc
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS---SDNSKGDSIASDV 656 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~---~~~~v~~~~~~~i 656 (683)
...+++++|+++++.+++++++++++++|+++++..+||+++ ++++|-||.+|+.+..-+.. .+.++.+.|-+..
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~f 140 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPF 140 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCC
Confidence 456799999999999999999999999999999999999987 89999999999999954332 2345555554433
No 47
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.96 E-value=1.8e-05 Score=70.73 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=51.4
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+.+++++|.++++++++++++.++.+.|.+++...+||+|+ ++++|+|+++|+.+
T Consensus 58 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 345689999999999999999999999999999999999997 99999999999875
No 48
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.92 E-value=2.1e-05 Score=69.72 Aligned_cols=55 Identities=29% Similarity=0.452 Sum_probs=50.8
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
..++.++|.+++.++++++++.++++.|.+.+...+||+|+ ++++|+|+.+|+.+
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 45689999999999999999999999999999999999997 89999999999975
No 49
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.90 E-value=2.5e-05 Score=81.47 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=57.8
Q ss_pred CCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 579 ~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
..++.++..+|++++.++.+.+++..+.+.|--.+.+-+||+|++++++|+|||+|+++.++.
T Consensus 245 ~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 245 KKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 345667889999999999999999999999999999999999999999999999999999643
No 50
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.90 E-value=2.7e-05 Score=69.11 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=50.0
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+++++|.+++.+++++++++++++.|.+++...+||+| +++++|+||++|+.+
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 458999999999999999999999999999999999998 589999999999975
No 51
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=2.7e-05 Score=68.99 Aligned_cols=55 Identities=29% Similarity=0.465 Sum_probs=51.1
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++.+++++++++++.+.|.+++.+.+||+|++++++|++|++|+.+
T Consensus 56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 4588999999999999999999999999999999999998789999999999875
No 52
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.88 E-value=2.6e-05 Score=83.69 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=59.9
Q ss_pred cccccccC--ceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc-CCCCcCCCCcccc
Q 005685 585 VSRAMSKD--FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS-SDNSKGDSIASDV 656 (683)
Q Consensus 585 V~diM~~~--~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~-~~~~v~~~~~~~i 656 (683)
|+|+|.++ +++++++++++|+.+.|.+++...+||+|++++++|+|+.+|+.+.+.... .+.++.+.|.++.
T Consensus 199 V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 199 VHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 99999998 999999999999999999888899999999999999999999998754322 2344556665443
No 53
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.87 E-value=2.7e-05 Score=72.71 Aligned_cols=85 Identities=26% Similarity=0.308 Sum_probs=64.4
Q ss_pred hhhhhcccc-chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEe
Q 005685 553 LSVVENAAD-SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILT 631 (683)
Q Consensus 553 L~~~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt 631 (683)
+|+++.+.- +...|.++.+.+-+...+....+|+++|...+++++++.+++.+.+++.. +.++.|++ +|+++||||
T Consensus 99 lPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~e-~G~~vGIIT 175 (187)
T COG3620 99 LPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEE--HPAVLVVE-NGKVVGIIT 175 (187)
T ss_pred CceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhh--CCeEEEEe-CCceEEEEe
Confidence 455555333 56666655554433334666677999999999999999999999999964 47888885 689999999
Q ss_pred HHHHHHHHh
Q 005685 632 YGDIKRCLS 640 (683)
Q Consensus 632 ~~dl~~~~~ 640 (683)
+.|+.+...
T Consensus 176 k~DI~k~~~ 184 (187)
T COG3620 176 KADIMKLLA 184 (187)
T ss_pred HHHHHHHHh
Confidence 999998864
No 54
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.87 E-value=2e-05 Score=70.43 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=50.9
Q ss_pred ccccccccccCceeecCC--CCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALT--VTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~--~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+.++.++|.+++.++.++ +++.++++.|.+++...+||+|++++++|+||++|+.+
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 355889999999999887 78999999999999999999998899999999999975
No 55
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.86 E-value=3.6e-05 Score=82.57 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=53.3
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
+.+++|+|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+||++|+.++
T Consensus 262 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 445899999999999999999999999999999999999988899999999999875
No 56
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.85 E-value=6.5e-05 Score=85.09 Aligned_cols=174 Identities=22% Similarity=0.242 Sum_probs=114.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cch---h--HHHhhhHHH---HHHHHhhcccccccChHHH
Q 005685 310 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG-LPP---V--VCPALGGLG---AGIIALRYPGILYWGFTNV 380 (683)
Q Consensus 310 ~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~-~~~---~--~~~~iggl~---~g~i~~~~P~~lg~G~~~i 380 (683)
.++.+.++||++.+++++..=+.+..+.+....+.+... .+. | |..-..+++ .++.-+.-|+..|+|...+
T Consensus 94 eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEm 173 (931)
T KOG0476|consen 94 EDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEM 173 (931)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCCChhH
Confidence 556777899999999998887777766655443322211 011 1 111111221 2222345699999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHH
Q 005685 381 EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAY 460 (683)
Q Consensus 381 ~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~ 460 (683)
..++++-.. .-++-.--++.|++...+++|+|.|-|-.+|-..|++.+...+..+.+-.+.. +..+. ....-.
T Consensus 174 KtIlrGv~L----keYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g-~~ene--sR~~Em 246 (931)
T KOG0476|consen 174 KTILRGVIL----KEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGG-FFENE--SRNMEM 246 (931)
T ss_pred HHHHHhhhH----HhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccc-cccCc--chHHHH
Confidence 988864221 11222335679999999999999999999999999999999888765322221 22221 112334
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHhCCc
Q 005685 461 ALVGMAATLASVCSVPLTSVLLLFELTRDY 490 (683)
Q Consensus 461 alvG~aA~~a~~~~~Plt~ivi~~Eltg~~ 490 (683)
-.+|.|-..|.++.+|++++++-+|.|..|
T Consensus 247 LaaaCAVGVactFsAPiGgVLfSIEvTS~y 276 (931)
T KOG0476|consen 247 LAAACAVGVACTFSAPIGGVLFSIEVTSTY 276 (931)
T ss_pred HHHHhhhhheeeecCccceeEEEEEEeeee
Confidence 455666667778899999999999999644
No 57
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.85 E-value=3.3e-05 Score=69.03 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=51.0
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC--CeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE--DFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~--~~lvGiVt~~dl~~ 637 (683)
.+++++|.+++.++.+++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 34888999999999999999999999999999999999987 79999999999975
No 58
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.83 E-value=3e-05 Score=69.08 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=51.0
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||++|+..
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 4588999999999999999999999999999999999998899999999999863
No 59
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.83 E-value=2.6e-05 Score=70.36 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=50.8
Q ss_pred ccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecC---CeEEEEEeHHHHHH
Q 005685 581 PPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKR 637 (683)
Q Consensus 581 ~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~---~~lvGiVt~~dl~~ 637 (683)
++.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34558889985 78899999999999999999999999999987 69999999999864
No 60
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.82 E-value=3.8e-05 Score=69.72 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=48.9
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||++|++.
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 45688899999999999999999999999999999998899999999999863
No 61
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.82 E-value=2.8e-05 Score=70.38 Aligned_cols=56 Identities=30% Similarity=0.378 Sum_probs=52.0
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
..++.++|.++++++++++++.++++.|.+++.+.+||+|++++++|+|+++|+.+
T Consensus 68 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 44589999999999999999999999999999999999998899999999999975
No 62
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.81 E-value=3.6e-05 Score=68.02 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=51.4
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+++++|.+++.++++++++.++.+.|.+++.+.+||+|++++++|+++++|+.+
T Consensus 53 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 53 TTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred ccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 4588999999999999999999999999999999999998899999999999875
No 63
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.79 E-value=3.9e-05 Score=68.12 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=51.1
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+..
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 4588999999999999999999999999999999999998889999999999864
No 64
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.78 E-value=6.1e-05 Score=68.95 Aligned_cols=68 Identities=26% Similarity=0.282 Sum_probs=55.1
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc--CCCCcCCCCcccccc
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS--SDNSKGDSIASDVCN 658 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~--~~~~v~~~~~~~i~~ 658 (683)
+++.++++++++.++.+.|.+++...+||+|++++++|+++.+|+.+.+.++. .+.++.+.|..+..+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~ 71 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKR 71 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhcccee
Confidence 46788999999999999999999999999998899999999999998754433 245566666555443
No 65
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.76 E-value=4.9e-05 Score=85.61 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=59.9
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc--CCCCcCCCCcccc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS--SDNSKGDSIASDV 656 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~--~~~~v~~~~~~~i 656 (683)
++|+|.+++.+++++++++++.+.|.+++...+||+|++++++|+|+.+|+.+.+.++. .+.++.+.|.++.
T Consensus 337 v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~~~ 410 (454)
T TIGR01137 337 VKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSKKF 410 (454)
T ss_pred HHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCCCC
Confidence 99999999999999999999999999899999999998899999999999998754322 2334555665443
No 66
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.76 E-value=4.9e-05 Score=68.64 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=48.1
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
..+.|.+++.++++++++.++.+.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 67 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 67 RRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred hcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 34567778899999999999999999999999999998899999999999875
No 67
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.75 E-value=4.9e-05 Score=66.74 Aligned_cols=54 Identities=30% Similarity=0.336 Sum_probs=50.6
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++++|.+++.++.+++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 53 TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 488999999999999999999999999999999999998899999999999875
No 68
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.74 E-value=7.8e-05 Score=66.12 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=50.4
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+.+++++|.+++..+++++++.++.+.|.+++.+.+||+|++ +++|+|+++|+.+
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 3445889999999999999999999999999999999999975 9999999999864
No 69
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.74 E-value=6.1e-05 Score=66.68 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=51.8
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
.+++++|.+++..+.+++++.++.+.|.+++...+||+|++++++|+||++|+.+.
T Consensus 53 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 53 TPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred chHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 45889999999999999999999999999999999999988999999999999875
No 70
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.73 E-value=6e-05 Score=66.98 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=50.9
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++.++++++++.++++.|.+++...+||+|++++++|+++++|+.+
T Consensus 58 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 58 AKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 4588999999999999999999999999999999999998889999999999864
No 71
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.73 E-value=5e-05 Score=68.09 Aligned_cols=55 Identities=31% Similarity=0.396 Sum_probs=51.3
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++++++++++++++++.|.+.+.+.+||+|++++++|+||++|+.+
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 67 IKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred cCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 4488999999999999999999999999999999999998899999999999975
No 72
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.72 E-value=7.9e-05 Score=66.12 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=51.3
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++.++++++++.++++.|.+++...+||+|++++++|+|+.+|+.+
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 4589999999999999999999999999999999999998899999999999975
No 73
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.72 E-value=6.4e-05 Score=66.14 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=50.5
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+++++|.+++.++++++++.++.+.|.+.+.+.+||+|++++++|++|++|+.+
T Consensus 55 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 55 SLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred cHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 488999999999999999999999999999999999998899999999999864
No 74
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.70 E-value=7.7e-05 Score=83.93 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=57.2
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCccccc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVC 657 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~ 657 (683)
++++|.+++++++++++++|+.+.|.+++.+.+||+|++++++|+||.+|+... + .+.++.++|..++.
T Consensus 91 v~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~-~---~~~~V~diMt~~~i 159 (479)
T PRK07807 91 SRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV-D---RFTQVRDVMSTDLV 159 (479)
T ss_pred cccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-c---cCCCHHHhccCCce
Confidence 899999999999999999999999999999999999998999999999999543 1 12335555554443
No 75
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.70 E-value=5.9e-05 Score=78.71 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=58.8
Q ss_pred cccccccC-ceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc-CCCCcCCCCccc
Q 005685 585 VSRAMSKD-FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS-SDNSKGDSIASD 655 (683)
Q Consensus 585 V~diM~~~-~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~-~~~~v~~~~~~~ 655 (683)
|+|+|.++ +++++++++++++.+.|.+.+++.+||+|++++++|+|+.+|+.+...... .+.++.+.|.++
T Consensus 157 v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~ 229 (268)
T TIGR00393 157 VKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLG 229 (268)
T ss_pred HHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCC
Confidence 99999998 999999999999999999999999999998899999999999988754322 233455555444
No 76
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.69 E-value=6.7e-05 Score=67.08 Aligned_cols=54 Identities=28% Similarity=0.392 Sum_probs=49.6
Q ss_pred ccccccccCceeecC--CCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVAL--TVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~--~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+++++|.+++..+.. ++++.++++.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 58 ~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 58 PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 488999988888866 999999999999999999999998899999999999875
No 77
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.69 E-value=9.9e-05 Score=65.32 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=51.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCcccc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDV 656 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i 656 (683)
++.+++++++++|+.+.|.+.+.+.+||+|++++++|+|+..|+.+.+.+...+.++.+.+..+.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~ 66 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDF 66 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCC
Confidence 56788999999999999988889999999988999999999999987654443334445554433
No 78
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.69 E-value=5.8e-05 Score=68.04 Aligned_cols=55 Identities=27% Similarity=0.305 Sum_probs=51.1
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++.+++++++++++.+.|.+++.+.+||+|++++++|++|++|+.+
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 67 PTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 3488999999999999999999999999999999999998899999999999875
No 79
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.69 E-value=5.6e-05 Score=68.46 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=51.0
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.++++++++++++.++.+.|.+.+.+.+||+|++++++|+||++|+.+
T Consensus 70 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 70 EPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred cCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3588999999999999999999999999999999999998789999999999976
No 80
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.69 E-value=6.7e-05 Score=67.65 Aligned_cols=56 Identities=32% Similarity=0.481 Sum_probs=51.6
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
..++.++|.+++.++++++++.++.+.|.+.+.+.+||+|++++++|+||++|+.+
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 44588999999999999999999999999999999999998889999999999975
No 81
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.69 E-value=8.6e-05 Score=65.87 Aligned_cols=54 Identities=30% Similarity=0.434 Sum_probs=50.6
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+++++|.+++.+++++++++++++.|.+.+...+||+|++++++|+|+++|+.+
T Consensus 59 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 59 TVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 488999999999999999999999999999999999998899999999999975
No 82
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.69 E-value=7.6e-05 Score=65.88 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=52.0
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
...++.++|.+++.++++++++.++++.|.+.+...+||+|++++++|+|+++|+.+
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 345589999999999999999999999999999999999998899999999999875
No 83
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.68 E-value=0.00011 Score=66.26 Aligned_cols=52 Identities=8% Similarity=0.129 Sum_probs=46.8
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~ 642 (683)
+++.+++++++++++.+.|.+++.+.+||+|++++++|+++.+|+.++..++
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~ 52 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEG 52 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcC
Confidence 4678899999999999999999999999999889999999999999875443
No 84
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.68 E-value=8.6e-05 Score=65.68 Aligned_cols=56 Identities=34% Similarity=0.335 Sum_probs=51.2
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+..++.++|.+++.++++++++.++++.|.+++.+.+||+| +++++|+||++|+.+
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 34558999999999999999999999999999999999999 789999999999864
No 85
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.66 E-value=6.2e-05 Score=66.89 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=50.8
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
..++.++|.+++.++.+++++.++.+.|.+++.+.+||+|+ ++++|+||.+|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 44588999999999999999999999999999999999997 89999999999975
No 86
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.65 E-value=8.2e-05 Score=65.56 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=49.5
Q ss_pred cccccccccCceeecC-CCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVAL-TVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~-~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++..+.+ ++++.++.+.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 54 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 54 KPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 4588999887777777 999999999999999999999998899999999999875
No 87
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.65 E-value=0.00015 Score=64.62 Aligned_cols=64 Identities=20% Similarity=0.165 Sum_probs=50.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCccc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 655 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~ 655 (683)
++.++++++++.++.+.|.+++.+.+||+|++++++|+|+..|+.+...+.+.+.++.+.|..+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~ 65 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVP 65 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccccccccChhheeecC
Confidence 4678899999999999999889999999998899999999999988543333333455555433
No 88
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.65 E-value=0.00018 Score=76.22 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=56.7
Q ss_pred cCCccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHh
Q 005685 578 FSIPPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLS 640 (683)
Q Consensus 578 ~~~~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~ 640 (683)
+...+.+|+|+|++ ++.+++.+++++++.+.+.+++++.+||++++ ++++|+|+.+|++....
T Consensus 62 l~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~ 127 (292)
T PRK15094 62 MDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR 127 (292)
T ss_pred hccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence 46777789999998 69999999999999999999999999999876 78999999999987653
No 89
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.64 E-value=2.8e-05 Score=71.22 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=50.1
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHH---------hCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMK---------DGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~---------~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
++.+++++|.+++.+++++++++++.+++. +.+...+||+|++|+++|+||++|+.++
T Consensus 57 ~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 57 PSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred CCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 345699999999999999999999999653 3356788999988999999999999875
No 90
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.63 E-value=0.00011 Score=64.36 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=49.6
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
++++|.+++..+.+++++.++++.|.+++...+||+|++++++|+|+++|+.+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 53 CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 78899988888999999999999999999999999998889999999999864
No 91
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.63 E-value=0.00015 Score=64.83 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=44.0
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 593 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 593 ~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+.++++++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+...
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~ 50 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG 50 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh
Confidence 567899999999999999999999999999899999999999998753
No 92
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.63 E-value=7.3e-05 Score=68.26 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=48.4
Q ss_pred cccccccccccCceee------cCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHH
Q 005685 581 PPCQVSRAMSKDFVKV------ALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKR 637 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v------~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~ 637 (683)
.+.+++++|.+++..+ .+++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3455899998765443 268899999999999999999999987 79999999999875
No 93
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.63 E-value=9.2e-05 Score=65.61 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=51.0
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
++.+++++|.+++.++++++++.++.+.|.+++...+||+|+ ++++|+||++|+.+
T Consensus 55 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 345688999999999999999999999999999999999985 89999999999875
No 94
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.62 E-value=6.6e-05 Score=69.36 Aligned_cols=54 Identities=30% Similarity=0.361 Sum_probs=50.5
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+++++|.+++..+++++++.++.+.|.+.+.+.+||+| +|+++|+||++|+.+
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 458899999999999999999999999999999999999 799999999999875
No 95
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.61 E-value=0.00013 Score=67.84 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=50.8
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+.+++++|.+++..+++++++.++.+.|.+++.+.+||+|+ ++++|+||++|+.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 44689999999999999999999999999999999999987 89999999999875
No 96
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.61 E-value=8.1e-05 Score=65.27 Aligned_cols=45 Identities=18% Similarity=0.081 Sum_probs=42.6
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHH
Q 005685 593 FVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKR 637 (683)
Q Consensus 593 ~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~ 637 (683)
+.++++++++.++.+.|.+++.+.+||+|++ ++++|+||.+|+++
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7789999999999999999999999999987 89999999999975
No 97
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.61 E-value=8.6e-05 Score=66.21 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=47.8
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+++++|.+++.++++++++.++++.|.+.+ .+||+|++++++|+||++|+.+
T Consensus 63 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 63 LKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 4588999999999999999999999997754 6999998899999999999975
No 98
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.60 E-value=0.00011 Score=64.82 Aligned_cols=55 Identities=29% Similarity=0.378 Sum_probs=50.8
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++++++|+|+++|+.+
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 4588899999999999999999999999999999999998899999999999864
No 99
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.60 E-value=0.0001 Score=65.28 Aligned_cols=55 Identities=27% Similarity=0.300 Sum_probs=51.5
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEec-CCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG-EDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~-~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+
T Consensus 58 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 58 VVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 5689999999999999999999999999999999999998 789999999999875
No 100
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.60 E-value=0.00012 Score=84.56 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=55.5
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~ 643 (683)
+|+|+|.++++++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+.+.+.+
T Consensus 69 ~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~ 128 (546)
T PRK14869 69 QVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDIL 128 (546)
T ss_pred cHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhc
Confidence 499999999999999999999999999999999999998899999999999999865443
No 101
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.59 E-value=0.00022 Score=63.18 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=49.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc-cCCCCcCCCCcc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL-SSDNSKGDSIAS 654 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~-~~~~~v~~~~~~ 654 (683)
++.+++++++++++.+.|.+.+++.+||+|++++++|+|+.+|+.+..... +.+..+.+.|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~ 65 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTR 65 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccC
Confidence 567899999999999999988999999999889999999999998874332 222334444443
No 102
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.58 E-value=0.0001 Score=83.43 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=53.8
Q ss_pred ccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 581 PPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 581 ~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
.+.+|+|+|++ +++++++++++.|+.+.|.+++.+.+||+|++++++|+||++|+++.
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 34569999997 78899999999999999999999999999988999999999999987
No 103
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.58 E-value=0.00014 Score=64.31 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=49.9
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
++++|.+++.+++++++++++++.|.+++.+.+||+|++++++|+|+++|+.+
T Consensus 57 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 57 VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 88899999999999999999999999999999999998899999999999864
No 104
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.58 E-value=0.00013 Score=82.23 Aligned_cols=58 Identities=26% Similarity=0.317 Sum_probs=54.4
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
.+++|+|++++++++++++++|+++.|.+++.+.+||+|++++++|+||++|+.+...
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 4599999999999999999999999999999999999998899999999999999743
No 105
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.58 E-value=0.00015 Score=63.44 Aligned_cols=52 Identities=29% Similarity=0.382 Sum_probs=49.1
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 636 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~ 636 (683)
+++++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|+||.+|+.
T Consensus 52 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 52 LVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 488999999999999999999999999999999999997 9999999999986
No 106
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.58 E-value=0.00012 Score=64.76 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=50.0
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++..+.+++++.++.+.|.+++...+||+|+ ++++|+||++|+.+
T Consensus 57 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 57 KKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred CcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 3588999999999999999999999999999999999997 89999999999864
No 107
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.57 E-value=0.00018 Score=63.68 Aligned_cols=67 Identities=24% Similarity=0.338 Sum_probs=52.3
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccC-C-CCcCCCCccccc
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS-D-NSKGDSIASDVC 657 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~-~-~~v~~~~~~~i~ 657 (683)
+++++++++++++++.+.|.+.+.+.+||+|++++++|+|+++|+.+.+.+... + .++.+++.++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ 69 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPV 69 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCc
Confidence 467789999999999999999999999999988999999999999987544322 1 334455544433
No 108
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.57 E-value=0.00012 Score=78.73 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=53.0
Q ss_pred CcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 580 IPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 580 ~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
.++.+|+|+|++++.++++++++.|+.+.|.+++.+.+||+| +++++|+||++|+.++
T Consensus 266 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 345569999999999999999999999999999999999998 5789999999999875
No 109
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=8.7e-05 Score=66.19 Aligned_cols=55 Identities=22% Similarity=0.322 Sum_probs=48.8
Q ss_pred ccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+ ++.++.+++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+
T Consensus 57 ~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 57 TTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred cchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 458889975 3678999999999999999999999999998889999999999864
No 110
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=0.00011 Score=66.28 Aligned_cols=54 Identities=24% Similarity=0.430 Sum_probs=50.6
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
+.++|.++++.++++++++++.+.|.+++.+.+||+|++++++|+++++|+.++
T Consensus 69 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 69 AHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred HHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 889999999999999999999999999999999999988999999999999763
No 111
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.56 E-value=0.00019 Score=62.91 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=43.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHH
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCL 639 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~ 639 (683)
+++++++++++.++.+.|.+++++.+||+|++ ++++|+||.+|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 46789999999999999999999999999975 8999999999998864
No 112
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.55 E-value=0.00014 Score=64.16 Aligned_cols=54 Identities=28% Similarity=0.391 Sum_probs=50.6
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
++.++|.+++.++.+++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 57 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 57 LVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred CHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 478899999999999999999999999999999999998899999999999975
No 113
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.55 E-value=0.00015 Score=64.11 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=50.3
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.++++.+++++++.++.+.|.+++.+.+||+|+ ++++|++|++|+.+
T Consensus 57 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 57 TPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 4588999999999999999999999999999999999997 89999999999875
No 114
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.55 E-value=0.00017 Score=65.81 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=48.4
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
..+.|.+++.++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+.+
T Consensus 73 ~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 73 SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 34578888999999999999999999999999999998899999999999975
No 115
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.54 E-value=0.00028 Score=62.32 Aligned_cols=50 Identities=30% Similarity=0.365 Sum_probs=45.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
++.+++++++++++.+.|.+++++.+||+|++++++|+++.+|+.+.+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh
Confidence 56788999999999999999999999999988999999999999987543
No 116
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.53 E-value=0.00016 Score=63.62 Aligned_cols=53 Identities=28% Similarity=0.322 Sum_probs=48.8
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
++.++|.+++.++++++++.++.+.|.+++.+.+||+| +++++|+||++|+.+
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 37789999999999999999999999999999999998 589999999999864
No 117
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.53 E-value=0.00015 Score=66.60 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=49.8
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
++.++|.+++..+++++++.++.+.|.+.+.+.+||+|+ ++++|++|++|+.+
T Consensus 79 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 488999999999999999999999999999999999998 99999999999975
No 118
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.52 E-value=0.00012 Score=65.75 Aligned_cols=54 Identities=24% Similarity=0.319 Sum_probs=50.2
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+++|+.+
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 67 LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 3488899999999999999999999999999999999998 89999999999975
No 119
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.52 E-value=0.00018 Score=63.76 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=51.0
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+.++.++|.++++++++++++.++.+.|.+++...+||+|+++++.|++|++|+.+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 34588999999999999999999999999888899999998899999999999864
No 120
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.52 E-value=0.00017 Score=81.09 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=54.5
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
.+++++|+++++++++++++.|+.++|.+++.+.+||+|++++++|+||++|+.+...
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 4599999999999999999999999999999999999998899999999999999743
No 121
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.51 E-value=0.00032 Score=61.86 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=45.6
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+++.+++++++++++.+.|.+++...+||+|++++++|+++.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence 57788999999999999999999999999998899999999999987653
No 122
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.50 E-value=0.00018 Score=63.67 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=47.4
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+.++| +++.++.+++++.++.+.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 58 ~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 366666 57888999999999999999999999999998899999999999864
No 123
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.00035 Score=62.30 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=44.5
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCL 639 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~ 639 (683)
+++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04630 1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV 50 (114)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence 356789999999999999998999999999987 8999999999999864
No 124
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.49 E-value=0.00037 Score=62.20 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=45.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
++.+++++++++++.+.|.+.+...+||+|++++++|+++.+|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~ 51 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEA 51 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhc
Confidence 56788999999999999999999999999988999999999999987543
No 125
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.49 E-value=0.00022 Score=79.17 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=58.0
Q ss_pred hhcCCccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHh
Q 005685 576 LQFSIPPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLS 640 (683)
Q Consensus 576 ~~~~~~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~ 640 (683)
+.++..+.+|+|+|++ ++++++.+++++|+.+.+.+++++.+||++++ ++++|+|+.+|+....+
T Consensus 184 ~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 184 GIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred HHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence 4457788889999997 79999999999999999999999999999865 68999999999987654
No 126
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.48 E-value=0.00019 Score=81.32 Aligned_cols=60 Identities=27% Similarity=0.370 Sum_probs=55.1
Q ss_pred ccccccccccC--ceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 582 PCQVSRAMSKD--FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 582 ~~~V~diM~~~--~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+.+|+++|+++ +++++++++++|+++.|.+++.+.+||+|++++++|+||++|+.+..+.
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 45699999977 7899999999999999999999999999988999999999999999543
No 127
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.48 E-value=0.00035 Score=63.11 Aligned_cols=51 Identities=31% Similarity=0.422 Sum_probs=46.0
Q ss_pred ccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 590 SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 590 ~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
++++.++++++++.++.+.|.+++++.+||+|++++++|+|+.+|+.+...
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 51 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHAR 51 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhc
Confidence 357889999999999999999999999999998899999999999987743
No 128
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.47 E-value=0.0003 Score=62.69 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=49.7
Q ss_pred cCceeecCCCCHHHHHHHHHhCC-CCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQ-QNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~-~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
+++.++++++++.++.+.|.+++ ...+||+|++++++|+|+.+|+.+...+...+.++.++|.
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~ 64 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMT 64 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhccccchhhhhc
Confidence 35678999999999999997664 7899999988999999999999987644333334455554
No 129
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.47 E-value=0.00024 Score=63.33 Aligned_cols=52 Identities=35% Similarity=0.443 Sum_probs=49.1
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHh-CCCCEEEEEecCC-eEEEEEeHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKD-GQQNCVLVVNGED-FLEGILTYGDI 635 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~-~~~~~lPVVd~~~-~lvGiVt~~dl 635 (683)
++.++|.++++++++++++.++.+.|.+ ++.+.+||+|+++ +++|++|+.|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 4899999999999999999999999999 7999999999986 99999999997
No 130
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.47 E-value=0.00018 Score=83.01 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=54.0
Q ss_pred cccccccc-cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 583 CQVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 583 ~~V~diM~-~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
.+|+++|+ +++++++++++++++.+.|.+++++.+||+|++++++|+||++|+.+...
T Consensus 246 ~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 246 IPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred CCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 34999999 89999999999999999999999999999999999999999999998643
No 131
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.00036 Score=62.15 Aligned_cols=49 Identities=22% Similarity=0.227 Sum_probs=44.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+++++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 5678999999999999999999999999998899999999999988753
No 132
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.46 E-value=0.00036 Score=64.99 Aligned_cols=51 Identities=57% Similarity=0.879 Sum_probs=46.4
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+++.+++++++++++.+.|.++++..+||+|++++++|+||.+|+.+....
T Consensus 1 ~~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 1 TKYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CCceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 367889999999999999998999999999998999999999999998643
No 133
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.46 E-value=0.00035 Score=51.12 Aligned_cols=47 Identities=36% Similarity=0.441 Sum_probs=42.7
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 593 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 593 ~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+.++.+++++.++.+.|.+++...+||+|++++++|+++.+|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56788999999999999999999999999888999999999998764
No 134
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.45 E-value=0.00018 Score=65.68 Aligned_cols=55 Identities=27% Similarity=0.417 Sum_probs=49.5
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEe--cCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVN--GEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd--~~~~lvGiVt~~dl~~ 637 (683)
.+++++|.++++++++++++.++.+.|.+++...+||++ ++++++|+||++|+.+
T Consensus 71 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 71 LPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 458899999999999999999999999999899999985 3589999999999875
No 135
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.44 E-value=0.00046 Score=60.86 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=49.1
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCC
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSI 652 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~ 652 (683)
+++.+++++++++++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.........++.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~ 61 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVM 61 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccccccCHHHHh
Confidence 46778999999999999999999999999998 99999999999998765443333344444
No 136
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.44 E-value=0.00038 Score=78.98 Aligned_cols=54 Identities=30% Similarity=0.258 Sum_probs=51.1
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
++|+|.+++++++++++++|+.+.|.+++++.+||+|++++++|+|+.+|+...
T Consensus 89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~ 142 (486)
T PRK05567 89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFE 142 (486)
T ss_pred hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhc
Confidence 789999999999999999999999999999999999998999999999999653
No 137
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.43 E-value=0.00027 Score=63.50 Aligned_cols=55 Identities=33% Similarity=0.417 Sum_probs=50.6
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
..+++++|.+++.+++++++++++++.|.+++...+||+|+ ++++|+++.+|+.+
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 34588999999999999999999999999999999999987 89999999999875
No 138
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.43 E-value=0.00042 Score=63.21 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=44.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
++.+++++++++++.+.|.+.+.+.+||+|++++++|+++.+|+.+.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 567899999999999999999999999999889999999999998764
No 139
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.41 E-value=0.00046 Score=61.19 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=50.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH-hhc-cCCCCcCCCCcccc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL-SKL-SSDNSKGDSIASDV 656 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~-~~~-~~~~~v~~~~~~~i 656 (683)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+.. +.+ ..+.++.++|..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~ 68 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPV 68 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCc
Confidence 367889999999999999999999999999889999999999998853 222 12334555554433
No 140
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00044 Score=61.22 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=44.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
++.+++++++++++.+.|.+++++.+||+|++++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence 5678999999999999999999999999998899999999999987643
No 141
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.39 E-value=0.00056 Score=60.41 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=49.9
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
+++++++.+++++++.+.|.+.+++.+||+|+ ++++|+++..|+.+.....+.+.++.+.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~ 63 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGLGHAPVKDYMS 63 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcccccCcHHHHhc
Confidence 46788999999999999999888999999998 999999999999987644433333444443
No 142
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.37 E-value=0.0003 Score=61.21 Aligned_cols=45 Identities=27% Similarity=0.411 Sum_probs=42.6
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 593 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 593 ~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+.++++++++.++.+.|.+++.+.+||+|++++++|+||++|+.+
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 788999999999999999999999999998889999999999975
No 143
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.36 E-value=0.00068 Score=59.70 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=49.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc-CCCCcCCCCcc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS-SDNSKGDSIAS 654 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~-~~~~v~~~~~~ 654 (683)
++.+++++++++++.+.|.+++.+.+||+|+ ++++|+++.+|+.+...++. .+.++.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~ 64 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPDLQTPVGEVMSS 64 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCC
Confidence 5678899999999999999888999999987 89999999999998865443 23334444433
No 144
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.36 E-value=0.00034 Score=61.89 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=45.9
Q ss_pred ccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 588 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 588 iM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+|.+++.++++++++.++.+.|.+++.+.+||++ +++++|+||++|+.+
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 8888999999999999999999999999999996 689999999999975
No 145
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.35 E-value=0.00046 Score=60.04 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=44.1
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
++++++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+.
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 367889999999999999998999999999988999999999999874
No 146
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.34 E-value=0.00067 Score=61.00 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=44.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
++.++++++++.++.+.|.+++.+.+||+|++++++|+|+..|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 5678999999999999999899999999998899999999999998853
No 147
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.34 E-value=0.00061 Score=76.55 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=55.6
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC---CeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~---~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
.++.|.+++++++++++++|+.+.|.+++++.+||+|++ ++++|+|+.+|+.... ..+.++.+.|.
T Consensus 82 ~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~---~~~~~V~dvm~ 150 (450)
T TIGR01302 82 AENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK---DKGKPVSEVMT 150 (450)
T ss_pred ccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---cCCCCHHHhhC
Confidence 788899999999999999999999999999999999987 7999999999997542 12334555555
No 148
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00051 Score=62.10 Aligned_cols=51 Identities=33% Similarity=0.323 Sum_probs=45.8
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhh
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~ 641 (683)
+++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+.+|+.+.+.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~ 52 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG 52 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc
Confidence 356789999999999999999999999999987 999999999999987644
No 149
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.31 E-value=0.00052 Score=60.88 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=44.2
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+++.++++++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQL 49 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHh
Confidence 3567899999999999999888889999999889999999999999864
No 150
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.29 E-value=0.00071 Score=59.39 Aligned_cols=49 Identities=29% Similarity=0.316 Sum_probs=44.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
++.+++++++++++.+.|.+++.+.+||+|+ ++++|+++.+|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence 4678899999999999999999999999998 999999999999998544
No 151
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.29 E-value=0.00036 Score=61.28 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=46.9
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
.++.++|.+++.++++++++.++.+.|.+ . ...||+|++++++|+||++|+.++
T Consensus 57 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 57 LPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred cCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 45889999999999999999999999987 3 347899888999999999999753
No 152
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00058 Score=62.74 Aligned_cols=50 Identities=32% Similarity=0.460 Sum_probs=45.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
++.+++++++++++.+.|.+.+.+.+||+|++++++|+++..|+.+...+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence 56789999999999999998889999999988999999999999987543
No 153
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00062 Score=61.25 Aligned_cols=49 Identities=29% Similarity=0.324 Sum_probs=44.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAAL 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhc
Confidence 5678999999999999999999999999998899999999999998753
No 154
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.28 E-value=0.0005 Score=61.59 Aligned_cols=55 Identities=25% Similarity=0.195 Sum_probs=47.9
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCC---EEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQN---CVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~---~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++..+++++++.++.+.|.+++.. ..||+|++++++|+|+.+|+.+
T Consensus 61 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 61 KPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 458999999999999999999999999887753 3468888899999999999864
No 155
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.27 E-value=0.00077 Score=60.34 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=43.1
Q ss_pred cCceeecCCCCHHHHHHHHHhCC-CCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQ-QNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~-~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+++++++++++++++.+.|.+.+ ++.+||+|+ ++++|+|+.+|+.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS 50 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence 35678899999999999998776 889999999 99999999999987644
No 156
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.25 E-value=0.0009 Score=58.93 Aligned_cols=50 Identities=30% Similarity=0.412 Sum_probs=44.6
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+++.+++++++++++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~ 50 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAE 50 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhc
Confidence 36778999999999999999888999999998 999999999999887543
No 157
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.25 E-value=0.00071 Score=62.89 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=44.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
++.+++++++++++.+.|.+++.+.+||+|++++++|+|+..|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence 4678899999999999999999999999999899999999999998754
No 158
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.25 E-value=0.00072 Score=63.34 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=45.1
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
++++++++++++.++.+.|.+++...+||+|+ ++++|++++.|+.+.+..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~ 50 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVT 50 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHh
Confidence 46778999999999999999999999999998 999999999999987643
No 159
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.22 E-value=0.0007 Score=62.45 Aligned_cols=50 Identities=30% Similarity=0.393 Sum_probs=45.4
Q ss_pred ccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 590 SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 590 ~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
++++.++++++++.++.+.|.+++.+.+||+|++++++|+|+++|+.+..
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~ 50 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRA 50 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHh
Confidence 35678899999999999999999999999999889999999999998763
No 160
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.21 E-value=0.00084 Score=75.52 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=58.9
Q ss_pred CCcccccccccccCceeecCCCCHHHHHHHHHh-----CCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKD-----GQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 579 ~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~-----~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
+.++.+++++|+++++++++++|++|+.+.+++ ++...+||+|++++++|+|+.+|+... ..+.+++++|.
T Consensus 127 ~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a----~~~~~v~~im~ 202 (449)
T TIGR00400 127 SYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA----KPEEILSSIMR 202 (449)
T ss_pred CCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC----CCCCcHHHHhC
Confidence 667788999999999999999999999999975 345678999988999999999998753 12334555555
Q ss_pred ccc
Q 005685 654 SDV 656 (683)
Q Consensus 654 ~~i 656 (683)
++.
T Consensus 203 ~~~ 205 (449)
T TIGR00400 203 SSV 205 (449)
T ss_pred CCC
Confidence 443
No 161
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.19 E-value=0.00045 Score=78.35 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=54.1
Q ss_pred cccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 582 PCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 582 ~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+.+++|+|++ ++++++++++++|+.++|.+++.+.+||+|++++++|+||++|+.+..
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 4569999998 899999999999999999999999999999999999999999999883
No 162
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.17 E-value=0.00063 Score=59.25 Aligned_cols=53 Identities=38% Similarity=0.446 Sum_probs=49.5
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+.++|..++.++.+++++.++.+.|.+.+...+||+|++++++|+++++|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 66789999999999999999999999999999999999899999999999875
No 163
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.17 E-value=0.0014 Score=57.95 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=43.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
++++++++++++|+.+.|.+++.+.+||+|+ ++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~ 49 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVL 49 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHH
Confidence 5678899999999999999888999999998 88999999999998753
No 164
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.16 E-value=0.0012 Score=58.62 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=49.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc-CCCCcCCCCcc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS-SDNSKGDSIAS 654 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~-~~~~v~~~~~~ 654 (683)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+.+.+.. .+.++.+.+.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~ 66 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNR 66 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcC
Confidence 4567899999999999999889999999998899999999999987654322 22334445443
No 165
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.15 E-value=0.00054 Score=71.82 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=58.2
Q ss_pred cccccccc--cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCccccc
Q 005685 583 CQVSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVC 657 (683)
Q Consensus 583 ~~V~diM~--~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~ 657 (683)
.+|.|+|. .+..++.++++++|..++-.++++..|||+|+..+++|+||.+|+... ..+.+...+|.+...
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~----~~~t~ieKVMtknp~ 260 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK----KPSTTIEKVMTKNPI 260 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC----CCCccHHHHhccCCe
Confidence 45999999 689999999999999999999999999999999999999999998764 223334445544333
No 166
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.14 E-value=0.00051 Score=76.26 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=60.9
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH-HhhccC-CCCcCCCCccccc
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC-LSKLSS-DNSKGDSIASDVC 657 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~-~~~~~~-~~~v~~~~~~~i~ 657 (683)
.+.++|+.++++++++.++.++.+.|.+.+.+.+.++|+++...||||++|+.+. +.+..+ +.++.++|+.++.
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~~ 225 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVI 225 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCce
Confidence 3889999999999999999999999999999999999999999999999999998 433333 3444555544443
No 167
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.13 E-value=0.001 Score=58.41 Aligned_cols=53 Identities=34% Similarity=0.355 Sum_probs=48.4
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
++.++|.+++.+++++++++++.+.|.+++.+.+||+|+ ++++|+|+.+|+.+
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 377889999999999999999999999999999999985 79999999999864
No 168
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.12 E-value=0.0012 Score=58.49 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=51.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccC--CCCcCCCCccccc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS--DNSKGDSIASDVC 657 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~--~~~v~~~~~~~i~ 657 (683)
++.+++++++++++.+.+.+.+++.+||+|++++++|+++.+++.+.+.+... ..++.+.|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~ 70 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPK 70 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhccCCe
Confidence 45678999999999999988888999999988999999999999988654332 2245555554443
No 169
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.12 E-value=0.0018 Score=56.76 Aligned_cols=49 Identities=31% Similarity=0.468 Sum_probs=44.4
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+++..+++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 4667899999999999999988999999999889999999999998764
No 170
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.11 E-value=0.0017 Score=57.34 Aligned_cols=46 Identities=33% Similarity=0.395 Sum_probs=42.0
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+++.+++++++++++.+.|.+++++.+||+|+ ++++|+++.+|+..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~ 46 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVV 46 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHH
Confidence 35778999999999999999999999999998 99999999999873
No 171
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.11 E-value=0.0013 Score=74.69 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=54.8
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC---CeEEEEEeHHHHHHHHhhccCCCCcCCCCcc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 654 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~---~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~ 654 (683)
.++.|.+++++++++++++|+.++|.+++++.+||+|++ ++++|+|+.+|+... +..+.++.+.|.+
T Consensus 98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~---~~~~~~V~diMt~ 167 (495)
T PTZ00314 98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV---KDKSTPVSEVMTP 167 (495)
T ss_pred cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc---ccCCCCHHHhhCC
Confidence 667899999999999999999999999999999999974 799999999999743 1223345556654
No 172
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.09 E-value=0.001 Score=62.23 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=49.7
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.++.++|.+++.++++++++.++.+.|.+.+...+||+|+ ++++|+|+++|+.+
T Consensus 89 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 89 MKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred CCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 3488999999999999999999999999999999999997 89999999999864
No 173
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.09 E-value=0.0016 Score=58.19 Aligned_cols=48 Identities=29% Similarity=0.328 Sum_probs=43.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
++.+++++++++++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~ 49 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASP 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhh
Confidence 5678999999999999999999999999998 89999999999998754
No 174
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.04 E-value=0.0013 Score=57.99 Aligned_cols=48 Identities=25% Similarity=0.196 Sum_probs=43.5
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
.++.+++++++++++.+.|.+++++.+||+|++++++|+|+.+|+...
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK 49 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence 356789999999999999999889999999988999999999999754
No 175
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.0011 Score=60.26 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=45.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
++.+++++++++++.+.|.+++.+.+||+|++++++|+++..|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL 50 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence 5678999999999999999999999999998899999999999998754
No 176
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.04 E-value=0.0013 Score=73.20 Aligned_cols=78 Identities=23% Similarity=0.157 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+++++.+.+- .+-....++|+++|+.++++++.++-+-||.-.|.+++++.+||++ +|+.+|+||..||++..++
T Consensus 194 GIvT~~dl~~~v~-~~g~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 194 GIVTRKDLRSRVI-ADGRSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred ceeehHHHHHHHH-hcCCCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 5555555544443 1224455779999999999999999999999999999999999997 4899999999999999765
No 177
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.03 E-value=0.0014 Score=58.74 Aligned_cols=48 Identities=33% Similarity=0.445 Sum_probs=43.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
++.+++++++++++.+.|.+.+.+.+||+|++++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 567889999999999999989999999999889999999999998764
No 178
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.03 E-value=0.0017 Score=56.82 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=43.7
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
+++++++++++++++.+.|.+++...+||+|++++++|+++.+|+.+.
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~ 48 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA 48 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence 356789999999999999998889999999988999999999999875
No 179
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.02 E-value=0.0025 Score=56.27 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=42.9
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+++.+++++++++++.+.|.+++.+.+||+|++ +++|+++.+|+.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~ 48 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKV 48 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHH
Confidence 356788999999999999998899999999964 999999999999864
No 180
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.01 E-value=0.002 Score=73.20 Aligned_cols=67 Identities=18% Similarity=0.087 Sum_probs=54.5
Q ss_pred ccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEec---CCeEEEEEeHHHHHHHHhhccCCCCcCCCCccc
Q 005685 586 SRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 655 (683)
Q Consensus 586 ~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~---~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~ 655 (683)
+..|.++++++++++|++|+.+.|.+++++.+||+|+ +++++|+||.+|+.... +.+.++.+.|.++
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---~~~~~V~eIMt~~ 172 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---DRETKLSEVMTSD 172 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---ccCCcHHHHhccC
Confidence 3448899999999999999999999999999999997 37999999999997542 2344556666543
No 181
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.01 E-value=0.001 Score=74.86 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=54.1
Q ss_pred ccccccccc-cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 582 PCQVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 582 ~~~V~diM~-~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+.+++++|+ ++++++++++++.++.+.|.+++.+.+||+|++++++|+||++|+++..
T Consensus 142 ~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 456999999 5999999999999999999999999999999999999999999999884
No 182
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.01 E-value=0.0021 Score=57.66 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=43.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+.+.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~ 49 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALR 49 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhh
Confidence 5678999999999999999889999999997 99999999999988744
No 183
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.00 E-value=0.0025 Score=56.23 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=43.2
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+++.+++++++++++.+.|.+++.+.+||+|+ ++++|+++.+|+.+.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRV 48 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence 46778999999999999999888999999997 9999999999998753
No 184
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.00 E-value=0.0019 Score=72.80 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=54.6
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCccccc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVC 657 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~ 657 (683)
+.++|.+++++++++++++|+.+.|.+++.+.+||+|+ ++++|+||.+|+... ....++.++|..+..
T Consensus 90 v~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~----~~~~~V~dIMt~~li 157 (475)
T TIGR01303 90 SRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV----DRFTQVRDIMSTDLV 157 (475)
T ss_pred hhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC----CCCCCHHHHccCCce
Confidence 88999999999999999999999999999999999885 789999999998543 112335555554433
No 185
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.96 E-value=0.0024 Score=56.30 Aligned_cols=50 Identities=26% Similarity=0.429 Sum_probs=45.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~ 641 (683)
++.+++++++++++.+.|.+.+...+||+|++ ++++|+++.+|+.+...+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence 56789999999999999998889999999988 899999999999988644
No 186
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.96 E-value=0.0031 Score=54.82 Aligned_cols=52 Identities=31% Similarity=0.338 Sum_probs=46.0
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~ 643 (683)
++.+++++++++++.+.|.+++...+||+|++++++|+++++|+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~ 53 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG 53 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc
Confidence 5678899999999999999988999999998899999999999998865433
No 187
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.96 E-value=0.0018 Score=58.34 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=43.5
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+++++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~ 49 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAIS 49 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHH
Confidence 5678999999999999999999999999997 89999999999988643
No 188
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.94 E-value=0.0018 Score=73.40 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=53.3
Q ss_pred cccccc---cCceeecCCCCHHHHHHHHHhCCCCEEEEEec---CCeEEEEEeHHHHHHHHhhccCCCCcCCCCcc
Q 005685 585 VSRAMS---KDFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 654 (683)
Q Consensus 585 V~diM~---~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~---~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~ 654 (683)
|+++|. .+++++++++++.|+.+.|.++++..+||+|+ +++++|+||..|++.. ....+.++.++|.+
T Consensus 96 Vk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~--~~~~~~~V~dIMt~ 169 (502)
T PRK07107 96 VKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS--RMSLDTKVKDFMTP 169 (502)
T ss_pred HHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc--ccCCCCCHHHHhCC
Confidence 556665 45578999999999999999999999999997 5899999999999643 12334456666654
No 189
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.90 E-value=0.0027 Score=57.46 Aligned_cols=50 Identities=30% Similarity=0.337 Sum_probs=44.7
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~ 641 (683)
++.++++++++.++.+.|.+++...+||+|++ ++++|+|+.+|+++...+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~ 52 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWE 52 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHH
Confidence 56788999999999999998889999999987 899999999999987543
No 190
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.00086 Score=75.12 Aligned_cols=136 Identities=24% Similarity=0.218 Sum_probs=95.8
Q ss_pred hhcccccccChHHHHHHHhcCCCCC-CchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHh
Q 005685 367 LRYPGILYWGFTNVEEILHTGKTAS-APGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIIN 445 (683)
Q Consensus 367 ~~~P~~lg~G~~~i~~~l~~~~~~~-~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~ 445 (683)
.+.|...|+|...+...+. |.... ..+.| -++.|-++..+++++|.+-|-++|++.++.++|.++..++...-
T Consensus 150 ~~AP~A~gSGIpEIK~ilS-Gf~~~~~lg~~----tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~- 223 (696)
T KOG0475|consen 150 VVAPYACGSGIPEIKTILS-GFIIRGFLGKW----TLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYR- 223 (696)
T ss_pred heehhhhcCCCccceeeec-cchhhhhhhHH----HHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhc-
Confidence 4568888888887765553 22211 12223 45689999999999999999999999999999999887653321
Q ss_pred hhCCCCccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHHHHhhhcc
Q 005685 446 SAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDY---RILLPLMGAVGLAIWVPSVANQAK 514 (683)
Q Consensus 446 ~~~p~~~~~~~~~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~---~~l~P~~~a~~~a~~v~~~~~~~~ 514 (683)
. ..+-..-+....|||..+.+++||++++++.+|-.-++ ..+.--..++++|..+.+.+|...
T Consensus 224 ----~--~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i~pf~ 289 (696)
T KOG0475|consen 224 ----L--NEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSINPFG 289 (696)
T ss_pred ----c--chhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeeecccC
Confidence 1 11234455667788889999999999999999976422 233344566677777777666544
No 191
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.88 E-value=0.0014 Score=68.33 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=47.2
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEe
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILT 631 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt 631 (683)
++.+++|+|.++++++++++++.|+++.|.+++.+.+||+|++++++|+|+
T Consensus 218 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 218 LKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 345699999999999999999999999999999999999998899999985
No 192
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.87 E-value=0.0048 Score=54.75 Aligned_cols=68 Identities=25% Similarity=0.321 Sum_probs=55.1
Q ss_pred ccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCC-CcCCCCcc
Q 005685 586 SRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDN-SKGDSIAS 654 (683)
Q Consensus 586 ~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~-~v~~~~~~ 654 (683)
.+.|.++++++.++.++.++...|.+++...+||++. ++++|++|..|+.++........ ++.+.|..
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~ 70 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVKEVMTK 70 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCccccHHHhccC
Confidence 3566689999999999999999999999999999985 48999999999999965544332 34455543
No 193
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.84 E-value=0.0021 Score=68.10 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=51.9
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~ 642 (683)
.+++++|.+. .++++++++.++++.|++++.+.+||+|+.|.++|+||++|+++.+-.+
T Consensus 133 ~~l~~l~r~~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 133 FSMDKVLRQA-VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred CCHHHHcCCC-cCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 3478888654 5899999999999999999999999999888999999999999986443
No 194
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.82 E-value=0.0022 Score=57.59 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=44.0
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
+++.+++++++++++.+.|.+.+++.+||+|++++++|+++.+|+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 357789999999999999998899999999988999999999999875
No 195
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.79 E-value=0.0032 Score=57.33 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=42.4
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
++.+++++++++++++.|.+++.+.+||+|++++++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 4678999999999999999899999999998899999999999986
No 196
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.77 E-value=0.0053 Score=54.18 Aligned_cols=46 Identities=37% Similarity=0.515 Sum_probs=41.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
++.+++++++++++.+.|.+++.+.+||+|+ ++++|+|+.+|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~ 47 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALR 47 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence 5678899999999999999888899999997 999999999999854
No 197
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.76 E-value=0.0023 Score=72.74 Aligned_cols=57 Identities=30% Similarity=0.412 Sum_probs=53.5
Q ss_pred cccccccc-cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 583 CQVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 583 ~~V~diM~-~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
.+++|+|. ++++++++++++.++.+.|.+++.+.+||+|++++++|+||++|+.+..
T Consensus 147 ~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 45899998 7899999999999999999999999999999999999999999999874
No 198
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.74 E-value=0.0039 Score=55.44 Aligned_cols=49 Identities=33% Similarity=0.398 Sum_probs=41.7
Q ss_pred CceeecCCCCHHHHHHHHHhCC-CCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQ-QNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~-~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
++.++++++++.++.+.|.+++ .+.+||+| +++++|+++.+|+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~ 51 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAI 51 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhc
Confidence 5678899999999999998877 67788877 4889999999999987543
No 199
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.73 E-value=0.0039 Score=54.25 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=41.6
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
++.+++++++++++.+.|.+++.+.+||+| +++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~ 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence 567889999999999999988889999998 5899999999999875
No 200
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.73 E-value=0.0053 Score=54.18 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=41.1
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+++++++++++.++.+.|.+++...++|.+ +++++|+++.+|+.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~ 49 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMA 49 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHH
Confidence 467889999999999999888877777765 489999999999998754
No 201
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.70 E-value=0.0031 Score=55.37 Aligned_cols=48 Identities=29% Similarity=0.339 Sum_probs=43.3
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
+++..+++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE 49 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec
Confidence 467789999999999999998999999999988999999999998654
No 202
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.68 E-value=0.0051 Score=54.77 Aligned_cols=48 Identities=21% Similarity=0.152 Sum_probs=42.4
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEec---CCeEEEEEeHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRC 638 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~---~~~lvGiVt~~dl~~~ 638 (683)
.++.+++++++++++.+.|.+.+.+.+||+|+ +++++|+++.+|+...
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~ 52 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL 52 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh
Confidence 35678899999999999998888899999997 6899999999998753
No 203
>PRK11573 hypothetical protein; Provisional
Probab=96.62 E-value=0.0069 Score=67.35 Aligned_cols=64 Identities=11% Similarity=0.191 Sum_probs=56.8
Q ss_pred hhcCCccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHH
Q 005685 576 LQFSIPPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCL 639 (683)
Q Consensus 576 ~~~~~~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~ 639 (683)
..++..+.+|+|+|++ ++.+++.+++++|+.+.+.+++++.+||++++ +.++|+|..+|+.+..
T Consensus 180 ~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 180 SVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM 246 (413)
T ss_pred HHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence 3457788889999986 68889999999999999999999999999865 7899999999998764
No 204
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.61 E-value=0.0064 Score=53.68 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=43.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEec---CCeEEEEEeHHHHHHHHh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~---~~~lvGiVt~~dl~~~~~ 640 (683)
+...++++++++++.+.+.+++++.+||+|+ +++++|+|+.+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~ 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH
Confidence 4567899999999999999998899999998 689999999999988754
No 205
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.59 E-value=0.0047 Score=68.64 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=50.2
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+++++|. ++.++++++++.++++.|++++.+..+|+|+.|..+|+||.+|+.+.+
T Consensus 256 ~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileei 310 (408)
T TIGR03520 256 DWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEI 310 (408)
T ss_pred CHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 4677875 578999999999999999999999999999889999999999999985
No 206
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.54 E-value=0.0086 Score=52.39 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=40.4
Q ss_pred eeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 594 VKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 594 ~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
.+++++++++++.+.|.+.+...+||+|+ ++++|+++.+|+.+.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA 47 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence 46889999999999999999999999998 999999999999864
No 207
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.48 E-value=0.0054 Score=66.97 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=52.5
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
.+.+.|.+++.+++++++++|++..+.++++. +||+|++++++|+||+.++.+.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 37788888899999999999999999999988 9999999999999999999998654
No 208
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.38 E-value=0.006 Score=68.76 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=46.6
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+.++.++|.+++.++++++++.++.+.|.+++ .|||+++++++|+||++|+++.+
T Consensus 399 ~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 399 DDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCCHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 34689999999999999999999999998753 35566679999999999999864
No 209
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.35 E-value=0.01 Score=51.82 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=42.1
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
+++++++.+++++++.+.|.+.+...+||+|+ ++++|+++.+|+.+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~ 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc
Confidence 56788999999999999998888889999997 999999999999753
No 210
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.30 E-value=0.0071 Score=53.27 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=36.9
Q ss_pred ecCCCCHHHHHHHHHhCC-----CCEEEEEecCCeEEEEEeHHHHHH
Q 005685 596 VALTVTLKEAIESMKDGQ-----QNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 596 v~~~~tl~ea~~~l~~~~-----~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+.++++++|+.+.|.+++ ...+||+|++++++|+|+.+|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~ 48 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL 48 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc
Confidence 578999999999998776 368999998899999999999876
No 211
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=96.17 E-value=0.026 Score=63.26 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=57.8
Q ss_pred hcCCccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEe-cCCeEEEEEeHHHHHHHHhhc
Q 005685 577 QFSIPPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVN-GEDFLEGILTYGDIKRCLSKL 642 (683)
Q Consensus 577 ~~~~~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd-~~~~lvGiVt~~dl~~~~~~~ 642 (683)
-+++.+.+|+++|++ ++.+++.+.+++++.+.+.+++++.+||+| +.+.++|++..+|+++.....
T Consensus 200 v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 200 VLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred HhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 357788889999996 688899999999999999999999999999 347899999999999985443
No 212
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.93 E-value=0.022 Score=49.73 Aligned_cols=47 Identities=32% Similarity=0.337 Sum_probs=41.9
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
++.++.+++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~ 48 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN 48 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence 45678899999999999998888999999988999999999999753
No 213
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.80 E-value=0.019 Score=63.62 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=52.0
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~ 643 (683)
.+.+.|.++..++++++++++++..+.++... +||+|++++++|+|++.++.+.+..+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDREG 396 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhcC
Confidence 37778888889999999999999999887666 999999999999999999999975543
No 214
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.024 Score=63.21 Aligned_cols=61 Identities=25% Similarity=0.437 Sum_probs=53.9
Q ss_pred cCCcccccccccccCceeecCCCCHHHHHHHHHhC-----CCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 578 FSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDG-----QQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 578 ~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~-----~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
.+.++.++..+|+++++.++++.|++++++.+++. ....++|+|+++++.|+|+.++++..
T Consensus 127 l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a 192 (451)
T COG2239 127 LSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA 192 (451)
T ss_pred cCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC
Confidence 36677889999999999999999999999999843 45679999999999999999999854
No 215
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.014 Score=62.52 Aligned_cols=56 Identities=32% Similarity=0.303 Sum_probs=52.8
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
..++|+|+++.++.+.+.+++++-+++++++..-+||||+++.++-+|++.|+.+.
T Consensus 171 ~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 171 LLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred chhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 34899999999999999999999999999999999999999999999999999987
No 216
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.58 E-value=0.022 Score=57.04 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=54.1
Q ss_pred ccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhhcc
Q 005685 581 PPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 581 ~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~~~ 643 (683)
.+.+|+|+|.+ ..+++..+.++++++..+.+..|+.|||+.++ +.+.||+..+|+++++....
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~ 130 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA 130 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc
Confidence 34459999987 47889999999999999999999999999765 57999999999999865443
No 217
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=93.73 E-value=0.066 Score=57.21 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=57.1
Q ss_pred cCCccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhhcc
Q 005685 578 FSIPPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 578 ~~~~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~~~ 643 (683)
.+..+.+|+|+|.+ ++..++.+++.+++++.+.+..|+.+||..++ +..+|++..+|+.+++.++.
T Consensus 195 LDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~ 263 (423)
T COG4536 195 LDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN 263 (423)
T ss_pred cccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC
Confidence 36667779999986 57789999999999999999999999998765 56999999999999965544
No 218
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=93.53 E-value=0.073 Score=49.41 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=32.6
Q ss_pred ccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC
Q 005685 588 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE 623 (683)
Q Consensus 588 iM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~ 623 (683)
.|.++++++++++++.|+.+.|.+++.+.+||+|++
T Consensus 83 ~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 83 GQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 346789999999999999999999999999999864
No 219
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=93.00 E-value=0.27 Score=54.04 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=47.2
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~ 642 (683)
.++++.+++++.++.+.|.+++.+.+.|||+++.++|+||..|+..++...
T Consensus 311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 478899999999999999999999999999999999999999999996543
No 220
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=92.77 E-value=0.3 Score=54.75 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=46.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
++..+++++++.++++.|++++.+-..|+|+-|...|+||.+|+.+.+--
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 88899999999999999999999999999998999999999999998533
No 221
>PRK11573 hypothetical protein; Provisional
Probab=92.55 E-value=0.31 Score=54.26 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=47.3
Q ss_pred ccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 586 SRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 586 ~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
.++| +++..+++++++.++++.|++++.+-..|+|+.|...|+||.+|+++-+
T Consensus 258 ~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEei 310 (413)
T PRK11573 258 LRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI 310 (413)
T ss_pred Hhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHH
Confidence 3444 4678899999999999999999999999999989999999999999974
No 222
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=91.32 E-value=0.4 Score=52.79 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=44.7
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+.+ +.++..+++++++++|++..+.++++ -+||+|+ |+++|+|++.++++.+.
T Consensus 328 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 328 VES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred hhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 555 67778899999999999998877664 4888886 99999999999998864
No 223
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=90.32 E-value=0.26 Score=53.26 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=52.9
Q ss_pred ccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC---CeEEEEEeHHHHHHHHhhccCCCCcCCCCccccccc
Q 005685 590 SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVCNC 659 (683)
Q Consensus 590 ~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~---~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~~~ 659 (683)
..++++++|+.++.|+++.-..++...+||.++. .+|+|+||.+|+.-. +.+...+.+.|+.+..+.
T Consensus 115 ~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~---~~~~~~~~~vmt~~~~~~ 184 (503)
T KOG2550|consen 115 INNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL---EDNSLLVSDVMTKNPVTG 184 (503)
T ss_pred ccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh---hcccchhhhhcccccccc
Confidence 3577889999999999999999999999999753 589999999999655 333445667776665433
No 224
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=90.05 E-value=0.45 Score=52.34 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=47.3
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~ 643 (683)
++.++..++++.++++.|.+.+...+||||++++.+|++++.|+.....+..
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~ 289 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGT 289 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCc
Confidence 6888999999999999999999999999999988899999999998855433
No 225
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=90.03 E-value=0.87 Score=48.96 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=43.9
Q ss_pred cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 591 KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 591 ~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
.++.-++..+++.+-++.|++++.+.-.|||+-|.+.|+||.+|+++-
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEE 322 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEE 322 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHH
Confidence 466778999999999999999999999999998999999999999886
No 226
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.59 E-value=2 Score=45.58 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=44.5
Q ss_pred ccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 588 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 588 iM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
.+.+++.++.+++++.+.+....+. ...+||+|++++++|+|++.++..++.
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~-~~p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQA-PCPVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccccccCccchHHHHHHHHhcC-CCceeEEcCCCcEEEEecHHHHHHHHh
Confidence 5667788899999999999887644 467899999999999999999998864
No 227
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=82.50 E-value=3.1 Score=46.15 Aligned_cols=58 Identities=10% Similarity=0.171 Sum_probs=46.9
Q ss_pred cccccccccCce---eecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 583 CQVSRAMSKDFV---KVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 583 ~~V~diM~~~~~---~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
.++.++|.+.+. ...++.+..++++.|.+.+.+.+.|+|+++++.|+|+.+++.+..+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT 334 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh
Confidence 346777765332 2346778999999999999999999999999999999999987643
No 228
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=80.29 E-value=5.1 Score=43.87 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=44.4
Q ss_pred ccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 588 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 588 iM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
.|........++.+..++.+.|.+.+.+...|+|+++++.|.|+.+++.++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 299 (363)
T TIGR01186 247 RMNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK 299 (363)
T ss_pred hccccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh
Confidence 34444455677888999999999999999999999999999999999987754
No 229
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=78.96 E-value=38 Score=40.00 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=18.1
Q ss_pred CHHHHHHHHHhhhhhhhhhhcccccc-hhh-hheec
Q 005685 227 NRERKIALVAAGAASGIASGFNAAVA-GCF-FAIET 260 (683)
Q Consensus 227 ~~~~r~~l~~~GaaAGiaa~F~aPi~-G~l-Fa~E~ 260 (683)
++++| ..|.+|.+.+.++ |. |++ |++..
T Consensus 521 ~~~~k----~~~~~a~i~g~~g--ITEpaIPfgv~~ 550 (631)
T PRK09765 521 KEFEI----ETGKSTWLLGLAG--ITEGAIPMAIED 550 (631)
T ss_pred CHHHH----HHHHHHHHHHHHh--cCcccHHHHHhc
Confidence 55555 3577888887775 33 666 77754
No 230
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=76.54 E-value=4.2 Score=42.04 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=40.1
Q ss_pred ccccccccccCce----eecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 582 PCQVSRAMSKDFV----KVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 582 ~~~V~diM~~~~~----~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
...+.|.|.+... .+.....-.+++..+...+...+||+|++++++|.||++++...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 248 LVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred hhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 3446666665432 12333444556666667888999999999999999999999764
No 231
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=69.76 E-value=16 Score=37.13 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=46.0
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
++++ -++.+.++..-.+...++-++.++..-..|+|+=|-.-|.||.+|+++.+
T Consensus 135 i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqI 188 (293)
T COG4535 135 IKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQI 188 (293)
T ss_pred HHHh-cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHH
Confidence 4444 46667788888999999999998888889999888999999999999874
No 232
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=66.97 E-value=52 Score=30.01 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhc
Q 005685 492 ILLPLMGAVGLAIWVPSVANQA 513 (683)
Q Consensus 492 ~l~P~~~a~~~a~~v~~~~~~~ 513 (683)
.+.|+++.+++-..++..+|+.
T Consensus 92 ~~~pVl~g~~il~~~a~~~~~l 113 (120)
T PF04982_consen 92 VLIPVLLGSLILVVVALLFNNL 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 6789999888888888888864
No 233
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=56.74 E-value=1.9e+02 Score=31.63 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=16.3
Q ss_pred CHHHHHHHHHhhhhhhhhhhcccccc-hhh-hhee
Q 005685 227 NRERKIALVAAGAASGIASGFNAAVA-GCF-FAIE 259 (683)
Q Consensus 227 ~~~~r~~l~~~GaaAGiaa~F~aPi~-G~l-Fa~E 259 (683)
++++| ..+.+|.+++.++ |. +++ |++.
T Consensus 242 ~k~er----~~a~sA~isgl~G--ITEpAIPFgv~ 270 (359)
T PRK10478 242 SAEER----ETGKAALVMGCVG--VTEGAIPFAAA 270 (359)
T ss_pred CHHHH----HHHHHHHHHHHHh--cCccchHHHHh
Confidence 55555 3577777777764 33 555 6654
No 234
>PRK10490 sensor protein KdpD; Provisional
Probab=50.15 E-value=48 Score=40.93 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHHHHHHHHHHHHHH
Q 005685 276 AMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFT 330 (683)
Q Consensus 276 ~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~g~lf~ 330 (683)
++.++||+++.+++++|| ..|.|++.-++...+..+.+++++|++.|.+..-..
T Consensus 446 ~pai~aavls~l~~nfFF-~~P~~Tf~v~~~~~~~t~~v~l~va~v~~~l~~r~r 499 (895)
T PRK10490 446 WPSVVATVINVASFDLFF-VAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVR 499 (895)
T ss_pred HHHHHHHHHHHHHHHhee-CCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888766 346677665666667777788888888876665443
No 235
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=44.71 E-value=80 Score=37.98 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=52.6
Q ss_pred hcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHHHHHHHHH
Q 005685 246 GFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVV 325 (683)
Q Consensus 246 ~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~ 325 (683)
.|+.+.-.++|-+=++.-.... ..++.++||+++.+++++||- .|.|++.-++...+..+..++..|++.|-+
T Consensus 419 ~~~~~ni~mvFllgVlv~av~~------g~~pa~~aailsvl~fNyFF~-ePryTf~v~d~~y~vTf~vml~vai~t~~L 491 (890)
T COG2205 419 FFDLANIVMLFLLGVLVVAVLT------GRWPAVLAALLSVLVFNYFFT-EPRYTFAVSDPQYLVTFAVMLAVALLTGNL 491 (890)
T ss_pred hccchhHHHHHHHHHHHHHHHh------chHHHHHHHHHHHHHHhheec-CCceEEEEecCchHHHHHHHHHHHHHHHHH
Confidence 5777777888888776533221 136689999999999998774 466776656665566666777777777665
Q ss_pred HHHH
Q 005685 326 SVVF 329 (683)
Q Consensus 326 g~lf 329 (683)
..-.
T Consensus 492 t~~v 495 (890)
T COG2205 492 TARV 495 (890)
T ss_pred HHHH
Confidence 5443
No 236
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=40.66 E-value=5.9e+02 Score=28.88 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHhhhhhhhhhhcccccchhhhhee
Q 005685 210 VDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIE 259 (683)
Q Consensus 210 v~iGa~ig~~l~~~~~~~~~~r~~l~~~GaaAGiaa~F~aPi~G~lFa~E 259 (683)
.|.|+++|-++- .+|++.| ..+.+|++++.|+ -==.++|.+=
T Consensus 351 aq~ga~lav~lk---~k~~~~k----~~a~sa~is~~~G-ITEPaiyGv~ 392 (462)
T TIGR01992 351 AQGSAALGIIFM---SRNEKEK----GLSLTSAISAYLG-VTEPAMFGVN 392 (462)
T ss_pred HHHHHHHHHHHH---HCCHHHH----HHHHHHHHHHHhc-cchHhHHHhc
Confidence 366666665441 1355544 3588888998885 2224556664
No 237
>PRK12438 hypothetical protein; Provisional
Probab=40.32 E-value=8.4e+02 Score=30.52 Aligned_cols=17 Identities=35% Similarity=0.786 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 005685 107 FFNKGVHIIHEWAWAGT 123 (683)
Q Consensus 107 ~f~~~i~~~~~~~~~~~ 123 (683)
++..+.++..+|+|...
T Consensus 32 ~~~~~~~~~td~lWf~~ 48 (991)
T PRK12438 32 FGPRLVDIYTDWLWFGE 48 (991)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44556788889988754
No 238
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.15 E-value=46 Score=30.53 Aligned_cols=17 Identities=24% Similarity=0.749 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005685 313 PLYLILGMLCGVVSVVF 329 (683)
Q Consensus 313 ~~~illGil~Gl~g~lf 329 (683)
...|++|+++|++|..+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 35689999999988664
No 239
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=35.50 E-value=9e+02 Score=29.46 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 005685 105 VAFFNKGVHIIHEWAWAGT 123 (683)
Q Consensus 105 ~~~f~~~i~~~~~~~~~~~ 123 (683)
..++..+.++..+|.|...
T Consensus 17 ~~~~~~~~~~~td~lWF~~ 35 (774)
T PF03699_consen 17 ILLGFILVGFYTDWLWFSS 35 (774)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333467788888888643
No 240
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=33.74 E-value=1.2e+02 Score=22.02 Aligned_cols=29 Identities=31% Similarity=0.671 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 005685 143 ILLIPVTGGVIVGMMHGLLEILNQIKQSS 171 (683)
Q Consensus 143 ~~lip~~gglivgl~~g~~~v~~~i~~~~ 171 (683)
.+.+|+.-.++.|++.|+.++.+-+...+
T Consensus 9 ~iMVPVvma~ilglIyGlGevfN~iS~~G 37 (41)
T PF10766_consen 9 VIMVPVVMALILGLIYGLGEVFNLISKIG 37 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56789988999999999999888776443
No 241
>TIGR01996 PTS-II-BC-sucr PTS system, sucrose-specific IIBC component. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Probab=33.62 E-value=7.5e+02 Score=28.02 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHhhhhhhhhhhcccccchhhhhe
Q 005685 210 VDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAI 258 (683)
Q Consensus 210 v~iGa~ig~~l~~~~~~~~~~r~~l~~~GaaAGiaa~F~aPi~G~lFa~ 258 (683)
.+.|++++..+. +++++.| ..+.+|.+++.|+ ===+++|.+
T Consensus 350 ~~~GaalA~~l~---~K~k~~k----~~a~sa~i~~~~G-ITEPaiygv 390 (461)
T TIGR01996 350 AQGGAALAVFFK---TKDKKLK----GLAIPSGLSALLG-ITEPAIFGV 390 (461)
T ss_pred HHHHHHHHHHHH---hCCHHHH----HHHHHHHHHHHhC-CcccHHHHh
Confidence 356666665443 2355555 3577778887774 112444554
No 242
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=33.21 E-value=7.9e+02 Score=28.12 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=16.0
Q ss_pred CHHHHHHHHHhhhhhhhhhhcccccc-hhh-hhee
Q 005685 227 NRERKIALVAAGAASGIASGFNAAVA-GCF-FAIE 259 (683)
Q Consensus 227 ~~~~r~~l~~~GaaAGiaa~F~aPi~-G~l-Fa~E 259 (683)
++++|. .+.+|.+++.++ |+ +++ |++.
T Consensus 368 ~~~~r~----~~~sa~i~gl~G--ITEpAIPfgv~ 396 (482)
T PRK11404 368 TRQEKE----AASSAIVVGATV--ATEPAIPYALA 396 (482)
T ss_pred CHHHHH----HHHHHHHHHHHh--cCcchhHHHHc
Confidence 566553 577777777664 33 555 6554
No 243
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=28.63 E-value=91 Score=27.05 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhcCCcccc--cccccCccccchHHHHHHHHHHHHHHHH
Q 005685 278 IILASVISSTVSTVLLGTQSAF--TVPSYDLKSAAELPLYLILGMLCGVVSV 327 (683)
Q Consensus 278 ~~~asv~a~~v~~~l~g~~~~f--~~~~~~~~~~~~l~~~illGil~Gl~g~ 327 (683)
.+++++.+.......+-..+.+ +...++..++..+..++++|+++|.+..
T Consensus 49 gl~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~va~v~g~l~~ 100 (105)
T PF13493_consen 49 GLFAALLSSLLLNFFFFPPPFYDLTFLVYDPQDWITFAVFLVVALVTGYLAD 100 (105)
T ss_dssp -SHHHHHHHHHHHHTTS-SS----TT-SS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccccchhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 3455655554443222222222 2223344445666777888888877653
No 244
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=28.00 E-value=1.2e+03 Score=28.46 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005685 310 AELPLYLILGMLCGVVSVVFTRLVAWFTK 338 (683)
Q Consensus 310 ~~l~~~illGil~Gl~g~lf~~~~~~~~~ 338 (683)
.++...++=+++++.+..+|.+.+..+..
T Consensus 113 y~~~~~~~e~~l~~~l~~if~~~~~~~~~ 141 (764)
T TIGR02865 113 LDFILSIVEASLSFVLYYIFNYSIPCLKN 141 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555666788888899999988876653
No 245
>PRK11677 hypothetical protein; Provisional
Probab=24.43 E-value=80 Score=29.49 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005685 88 WALLLIGCLLGLASGLCVAFF 108 (683)
Q Consensus 88 ~~l~~~~~liG~~~Gl~~~~f 108 (683)
|.+.++++++|+++|+++.-+
T Consensus 3 W~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 888889999999999887765
No 246
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=24.26 E-value=1.2e+03 Score=27.29 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=10.9
Q ss_pred CHHHHHHHHHhhhhhhhhhhcc
Q 005685 227 NRERKIALVAAGAASGIASGFN 248 (683)
Q Consensus 227 ~~~~r~~l~~~GaaAGiaa~F~ 248 (683)
++++|. .|.++.+.+.++
T Consensus 456 ~k~er~----~~~sa~i~gl~G 473 (563)
T PRK10712 456 DKAQQE----GGKAALVLGLCF 473 (563)
T ss_pred CHHHHH----HHHHHHHHHHHh
Confidence 556553 466677776654
No 247
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=23.55 E-value=8.5e+02 Score=25.35 Aligned_cols=30 Identities=40% Similarity=0.653 Sum_probs=18.3
Q ss_pred ccchh--HhHHHHHHHHHHHHHHHHHHhhhCC
Q 005685 420 GLYAP--SLMIGAAVGAVFGGSAAEIINSAIP 449 (683)
Q Consensus 420 G~f~P--sl~iGA~~G~~~g~~~~~~~~~~~p 449 (683)
..-.| ++.+.+.+|..+|.+....++.-.|
T Consensus 93 ~~~~PI~~liia~iiG~vvG~lan~vigMkIP 124 (264)
T PRK01030 93 VLAGPIVALIIAAIIGAVVGKLANNVVGMKIP 124 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcccccCCCc
Confidence 35556 4467777777777666555554444
No 248
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.43 E-value=1.2e+02 Score=27.13 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHhhhhhhhhh
Q 005685 210 VDIGKSCANGFSLMMENNRERKIALVAAGAASGIAS 245 (683)
Q Consensus 210 v~iGa~ig~~l~~~~~~~~~~r~~l~~~GaaAGiaa 245 (683)
+..|+.+|+.+.+++...+---+.++..|..||+=-
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 457899999999999888877777888899988743
No 249
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=23.18 E-value=4.2e+02 Score=25.74 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=12.6
Q ss_pred CchhHHHhhhHHHHHHHHhh
Q 005685 349 LPPVVCPALGGLGAGIIALR 368 (683)
Q Consensus 349 ~~~~~~~~iggl~~g~i~~~ 368 (683)
.+..+...++++++++++..
T Consensus 150 ~~~~~~~~~aa~~~~~~a~~ 169 (193)
T PF06738_consen 150 LNSFIQEFIAAFLASLLAAL 169 (193)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 44456667777777776543
No 250
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=22.51 E-value=1e+02 Score=25.78 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=22.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 005685 84 APPEWALLLIGCLLGLASGLCVAFFNK 110 (683)
Q Consensus 84 ~~~~~~l~~~~~liG~~~Gl~~~~f~~ 110 (683)
.|.....+.+++++|++.|++.++++.
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~~re 81 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAFLRE 81 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366677888999999999999888764
No 251
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=20.58 E-value=1.8e+02 Score=24.22 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=22.5
Q ss_pred CCEEEEEecCCeEEEEEeHHHHHHHHhhcc
Q 005685 614 QNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 614 ~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~ 643 (683)
.+.+-|+|++|..+|+++.++.++..++..
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcC
Confidence 467788999999999999999998865543
Done!