Query 005685
Match_columns 683
No_of_seqs 343 out of 3353
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 100.0 5.3E-69 1.8E-73 621.8 38.7 484 83-641 3-514 (632)
2 1ots_A Voltage-gated CLC-type 100.0 3.6E-64 1.2E-68 560.3 47.7 422 73-526 19-452 (465)
3 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 3.3E-63 1.1E-67 549.4 44.8 415 76-524 7-435 (446)
4 3nd0_A SLL0855 protein; CLC fa 100.0 1.2E-63 4.1E-68 554.4 41.2 404 86-525 27-443 (466)
5 1ots_A Voltage-gated CLC-type 99.5 1.3E-13 4.6E-18 153.1 18.1 188 309-511 33-233 (465)
6 4ene_A CLC-EC1, H(+)/CL(-) exc 99.5 6.5E-13 2.2E-17 146.8 21.6 188 309-512 18-219 (446)
7 3nd0_A SLL0855 protein; CLC fa 99.5 3.4E-13 1.1E-17 149.6 18.8 187 309-511 29-228 (466)
8 3org_A CMCLC; transporter, tra 99.5 3.1E-13 1.1E-17 156.0 17.3 191 310-511 9-212 (632)
9 3gby_A Uncharacterized protein 98.7 2.5E-08 8.5E-13 90.2 8.0 77 581-658 3-80 (128)
10 3lv9_A Putative transporter; C 98.7 4.9E-08 1.7E-12 90.6 8.9 73 579-652 19-94 (148)
11 4esy_A CBS domain containing m 98.7 1.7E-08 5.9E-13 96.2 5.9 56 583-638 18-73 (170)
12 3kpb_A Uncharacterized protein 98.6 6.6E-08 2.3E-12 86.2 7.1 73 584-658 2-74 (122)
13 2yzi_A Hypothetical protein PH 98.6 1.1E-07 3.7E-12 86.8 8.7 78 580-657 4-83 (138)
14 2rih_A Conserved protein with 98.6 1.3E-07 4.6E-12 86.7 9.1 75 583-657 5-82 (141)
15 3ghd_A A cystathionine beta-sy 98.6 1.2E-07 4.3E-12 76.9 7.7 63 593-656 2-67 (70)
16 2ef7_A Hypothetical protein ST 98.6 1.8E-07 6.1E-12 84.8 9.2 75 582-657 3-78 (133)
17 3i8n_A Uncharacterized protein 98.5 4.8E-08 1.6E-12 88.6 5.1 72 582-653 5-79 (130)
18 3kxr_A Magnesium transporter, 98.5 1.1E-07 3.8E-12 93.9 8.0 88 581-668 114-204 (205)
19 3k2v_A Putative D-arabinose 5- 98.5 9.2E-08 3.2E-12 88.9 7.0 73 584-656 29-105 (149)
20 3fio_A A cystathionine beta-sy 98.5 1.8E-07 6.3E-12 75.0 7.7 64 592-656 1-67 (70)
21 3lhh_A CBS domain protein; str 98.5 1.6E-07 5.6E-12 89.7 8.5 77 579-657 38-117 (172)
22 3k6e_A CBS domain protein; str 98.5 9.9E-08 3.4E-12 90.0 6.5 90 553-644 51-145 (156)
23 2p9m_A Hypothetical protein MJ 98.5 1.5E-07 5.1E-12 85.8 7.4 76 582-657 7-84 (138)
24 3lqn_A CBS domain protein; csg 98.5 1.7E-07 5.7E-12 87.0 7.5 73 585-657 17-98 (150)
25 3nqr_A Magnesium and cobalt ef 98.5 4.5E-08 1.6E-12 88.4 3.5 72 583-654 3-77 (127)
26 1pbj_A Hypothetical protein; s 98.5 1.4E-07 4.8E-12 84.3 6.7 73 584-657 2-76 (125)
27 3fhm_A Uncharacterized protein 98.5 2.2E-07 7.5E-12 87.9 8.1 79 581-659 22-106 (165)
28 2o16_A Acetoin utilization pro 98.5 1.7E-07 5.8E-12 88.3 7.2 58 583-640 5-62 (160)
29 4fry_A Putative signal-transdu 98.5 2.4E-07 8.1E-12 86.7 8.1 82 562-644 57-138 (157)
30 2zy9_A Mg2+ transporter MGTE; 98.5 9.1E-08 3.1E-12 106.5 5.7 101 581-681 217-322 (473)
31 3ctu_A CBS domain protein; str 98.5 2.6E-07 8.9E-12 86.3 7.7 74 585-658 17-98 (156)
32 2emq_A Hypothetical conserved 98.5 2.9E-07 1E-11 85.9 8.1 76 582-657 10-94 (157)
33 2rc3_A CBS domain; in SITU pro 98.5 2.4E-07 8.1E-12 84.3 7.2 80 562-642 53-132 (135)
34 3lfr_A Putative metal ION tran 98.5 1E-07 3.6E-12 87.2 4.8 72 583-654 3-78 (136)
35 3kpb_A Uncharacterized protein 98.5 2.8E-07 9.5E-12 82.1 7.5 75 562-641 46-120 (122)
36 2d4z_A Chloride channel protei 98.5 2.3E-07 7.9E-12 94.5 7.8 63 580-642 10-74 (250)
37 3fhm_A Uncharacterized protein 98.5 2.6E-07 8.8E-12 87.5 7.5 81 562-643 72-152 (165)
38 3fv6_A YQZB protein; CBS domai 98.4 2.7E-07 9.4E-12 86.7 7.6 70 584-654 18-89 (159)
39 3k6e_A CBS domain protein; str 98.4 3.7E-07 1.3E-11 86.0 8.1 75 585-659 17-99 (156)
40 2uv4_A 5'-AMP-activated protei 98.4 3.4E-07 1.2E-11 85.2 7.4 88 553-640 55-150 (152)
41 3jtf_A Magnesium and cobalt ef 98.4 2E-07 6.8E-12 84.4 5.5 70 582-653 4-76 (129)
42 1o50_A CBS domain-containing p 98.4 3.8E-07 1.3E-11 85.4 7.4 57 582-639 15-72 (157)
43 3lv9_A Putative transporter; C 98.4 4.4E-07 1.5E-11 84.0 7.7 83 553-640 59-144 (148)
44 1pvm_A Conserved hypothetical 98.4 6E-07 2.1E-11 86.5 8.6 75 583-657 9-86 (184)
45 1yav_A Hypothetical protein BS 98.4 2.5E-07 8.5E-12 86.8 5.7 60 582-641 13-74 (159)
46 1y5h_A Hypothetical protein RV 98.4 1.5E-07 5.2E-12 85.2 4.0 74 584-657 9-85 (133)
47 3i8n_A Uncharacterized protein 98.4 5.8E-07 2E-11 81.3 7.8 74 562-639 54-127 (130)
48 2nyc_A Nuclear protein SNF4; b 98.4 3.1E-07 1.1E-11 84.1 6.0 80 562-641 56-141 (144)
49 3lhh_A CBS domain protein; str 98.4 6.2E-07 2.1E-11 85.6 8.2 77 562-643 90-166 (172)
50 4gqw_A CBS domain-containing p 98.4 2.3E-07 7.8E-12 85.7 4.9 57 582-638 4-62 (152)
51 3oi8_A Uncharacterized protein 98.4 2.1E-07 7.1E-12 87.4 4.5 74 580-654 35-111 (156)
52 2rc3_A CBS domain; in SITU pro 98.4 7.2E-07 2.5E-11 81.0 7.9 74 584-658 7-86 (135)
53 2pfi_A Chloride channel protei 98.3 4.4E-07 1.5E-11 85.1 6.2 61 581-641 11-73 (164)
54 3hf7_A Uncharacterized CBS-dom 98.3 2.4E-07 8.3E-12 84.1 4.2 59 583-641 2-63 (130)
55 3oco_A Hemolysin-like protein 98.3 5.9E-07 2E-11 83.8 6.9 72 584-657 21-96 (153)
56 1y5h_A Hypothetical protein RV 98.3 4E-07 1.4E-11 82.4 5.4 78 562-640 53-130 (133)
57 1pbj_A Hypothetical protein; s 98.3 7.2E-07 2.5E-11 79.6 7.0 78 562-641 45-122 (125)
58 3gby_A Uncharacterized protein 98.3 4.7E-07 1.6E-11 81.7 5.7 59 583-641 68-126 (128)
59 4esy_A CBS domain containing m 98.3 3.4E-07 1.2E-11 87.1 4.9 57 582-639 104-160 (170)
60 2ef7_A Hypothetical protein ST 98.3 7.3E-07 2.5E-11 80.7 6.9 81 562-644 48-128 (133)
61 3fv6_A YQZB protein; CBS domai 98.3 9.2E-07 3.1E-11 83.0 7.6 90 553-643 50-146 (159)
62 3ctu_A CBS domain protein; str 98.3 9.6E-07 3.3E-11 82.4 7.5 91 553-645 51-146 (156)
63 3ocm_A Putative membrane prote 98.3 1.8E-06 6.3E-11 82.6 9.6 62 580-641 33-97 (173)
64 2yzi_A Hypothetical protein PH 98.3 1.1E-06 3.9E-11 79.9 7.6 81 562-644 52-132 (138)
65 4gqw_A CBS domain-containing p 98.3 8E-07 2.7E-11 82.0 6.4 62 581-642 83-144 (152)
66 3oco_A Hemolysin-like protein 98.3 1.1E-06 3.6E-11 82.0 7.3 77 562-643 69-145 (153)
67 3kh5_A Protein MJ1225; AMPK, A 98.3 2E-06 6.9E-11 87.8 9.8 77 582-658 83-160 (280)
68 1o50_A CBS domain-containing p 98.3 9.9E-07 3.4E-11 82.5 6.9 62 580-642 93-154 (157)
69 2j9l_A Chloride channel protei 98.3 8E-07 2.7E-11 85.2 6.3 59 583-641 11-77 (185)
70 3sl7_A CBS domain-containing p 98.3 1.1E-06 3.8E-11 83.7 7.1 61 581-641 96-156 (180)
71 3l2b_A Probable manganase-depe 98.3 1.4E-06 4.8E-11 87.9 8.1 59 583-641 7-65 (245)
72 1pvm_A Conserved hypothetical 98.3 7.4E-07 2.5E-11 85.9 5.6 80 562-641 54-133 (184)
73 3sl7_A CBS domain-containing p 98.3 6.7E-07 2.3E-11 85.2 5.2 55 583-637 4-60 (180)
74 3lfr_A Putative metal ION tran 98.2 9.1E-07 3.1E-11 80.8 5.8 60 581-641 68-127 (136)
75 3lqn_A CBS domain protein; csg 98.2 1.5E-06 5E-11 80.5 7.2 81 562-644 62-146 (150)
76 2p9m_A Hypothetical protein MJ 98.2 1.3E-06 4.4E-11 79.4 6.5 78 562-641 53-136 (138)
77 3jtf_A Magnesium and cobalt ef 98.2 2.3E-06 7.7E-11 77.4 7.9 59 582-641 68-126 (129)
78 3nqr_A Magnesium and cobalt ef 98.2 1.5E-06 5E-11 78.3 6.5 58 581-639 67-124 (127)
79 2uv4_A 5'-AMP-activated protei 98.2 2.5E-06 8.6E-11 79.3 8.3 67 585-653 25-94 (152)
80 3hf7_A Uncharacterized CBS-dom 98.2 1.3E-06 4.5E-11 79.2 6.2 77 562-640 50-126 (130)
81 2nyc_A Nuclear protein SNF4; b 98.2 1.3E-06 4.6E-11 79.8 6.0 58 584-641 9-69 (144)
82 3kxr_A Magnesium transporter, 98.2 3.2E-06 1.1E-10 83.3 9.0 76 579-658 50-128 (205)
83 3pc3_A CG1753, isoform A; CBS, 98.2 1.6E-06 5.4E-11 97.9 7.6 78 581-658 382-463 (527)
84 3k2v_A Putative D-arabinose 5- 98.2 1E-06 3.6E-11 81.6 4.4 82 554-637 65-148 (149)
85 3ddj_A CBS domain-containing p 98.2 1.7E-06 5.9E-11 89.5 6.2 77 582-658 92-168 (296)
86 3l2b_A Probable manganase-depe 98.1 1E-06 3.6E-11 88.9 4.1 58 583-640 185-243 (245)
87 4fry_A Putative signal-transdu 98.1 2.2E-06 7.7E-11 79.9 6.1 74 584-658 8-90 (157)
88 1vr9_A CBS domain protein/ACT 98.1 3.6E-06 1.2E-10 83.3 7.9 62 582-643 71-132 (213)
89 2rih_A Conserved protein with 98.1 2.8E-06 9.5E-11 77.8 6.6 75 562-639 52-126 (141)
90 2j9l_A Chloride channel protei 98.1 4.3E-06 1.5E-10 80.0 7.8 63 581-644 106-168 (185)
91 3ddj_A CBS domain-containing p 98.1 1.6E-06 5.4E-11 89.8 5.0 78 581-658 154-239 (296)
92 2yzq_A Putative uncharacterize 98.1 2.2E-06 7.6E-11 87.7 6.0 61 581-641 219-279 (282)
93 2o16_A Acetoin utilization pro 98.1 3.5E-06 1.2E-10 79.1 6.7 60 581-641 76-135 (160)
94 2emq_A Hypothetical conserved 98.1 4.7E-06 1.6E-10 77.6 7.4 81 562-644 58-142 (157)
95 1vr9_A CBS domain protein/ACT 98.1 2.4E-06 8.2E-11 84.6 5.7 73 582-658 12-84 (213)
96 3ocm_A Putative membrane prote 98.1 5.3E-06 1.8E-10 79.4 7.9 77 562-644 84-160 (173)
97 3t4n_C Nuclear protein SNF4; C 98.1 2.7E-06 9.2E-11 89.2 5.8 80 562-641 235-320 (323)
98 2yvy_A MGTE, Mg2+ transporter 98.0 4.4E-06 1.5E-10 86.2 6.6 64 581-644 197-260 (278)
99 1yav_A Hypothetical protein BS 98.0 4.4E-06 1.5E-10 78.1 6.0 81 562-644 61-145 (159)
100 2pfi_A Chloride channel protei 98.0 7.8E-06 2.7E-10 76.4 7.4 81 562-643 60-149 (164)
101 3kh5_A Protein MJ1225; AMPK, A 98.0 5.3E-06 1.8E-10 84.6 6.6 77 562-641 129-205 (280)
102 2oux_A Magnesium transporter; 98.0 4.7E-06 1.6E-10 86.5 6.1 64 581-644 199-262 (286)
103 2qrd_G Protein C1556.08C; AMPK 98.0 8E-06 2.7E-10 86.0 7.0 82 562-643 230-317 (334)
104 3oi8_A Uncharacterized protein 98.0 5.1E-06 1.7E-10 77.8 4.9 55 581-636 101-155 (156)
105 2oux_A Magnesium transporter; 98.0 5.5E-06 1.9E-10 86.0 5.3 75 579-657 133-212 (286)
106 2yvy_A MGTE, Mg2+ transporter 97.9 1.6E-05 5.4E-10 82.0 8.6 76 579-658 131-211 (278)
107 3t4n_C Nuclear protein SNF4; C 97.9 8.8E-06 3E-10 85.2 6.6 74 581-654 185-264 (323)
108 2yzq_A Putative uncharacterize 97.9 1.7E-05 5.7E-10 81.2 7.9 74 583-656 60-136 (282)
109 2zy9_A Mg2+ transporter MGTE; 97.8 3.8E-05 1.3E-09 85.3 8.9 77 579-659 151-232 (473)
110 2v8q_E 5'-AMP-activated protei 97.7 1.5E-05 5.2E-10 83.7 4.0 62 582-643 258-325 (330)
111 2d4z_A Chloride channel protei 97.7 4.3E-05 1.5E-09 77.7 6.6 54 587-641 193-246 (250)
112 2v8q_E 5'-AMP-activated protei 97.7 5.7E-05 1.9E-09 79.3 7.5 56 585-640 37-95 (330)
113 4fxs_A Inosine-5'-monophosphat 97.7 5.7E-05 2E-09 84.3 7.8 66 585-653 91-156 (496)
114 3pc3_A CG1753, isoform A; CBS, 97.6 5.1E-05 1.7E-09 85.5 7.1 88 553-643 419-513 (527)
115 1zfj_A Inosine monophosphate d 97.6 0.0001 3.4E-09 82.4 8.7 61 581-641 150-211 (491)
116 3usb_A Inosine-5'-monophosphat 97.6 8.2E-05 2.8E-09 83.3 7.6 61 581-641 173-234 (511)
117 2qrd_G Protein C1556.08C; AMPK 97.6 6.2E-05 2.1E-09 79.1 6.3 60 582-641 181-243 (334)
118 1zfj_A Inosine monophosphate d 97.5 0.00023 8E-09 79.3 10.0 67 585-654 92-160 (491)
119 1me8_A Inosine-5'-monophosphat 97.5 2.5E-05 8.6E-10 87.5 2.0 69 585-655 98-170 (503)
120 3usb_A Inosine-5'-monophosphat 97.5 0.00011 3.9E-09 82.2 7.3 67 585-654 115-183 (511)
121 1vrd_A Inosine-5'-monophosphat 97.4 4.2E-05 1.4E-09 85.5 1.9 67 585-654 97-163 (494)
122 4af0_A Inosine-5'-monophosphat 97.3 3.1E-05 1.1E-09 85.3 0.0 57 582-638 199-255 (556)
123 1me8_A Inosine-5'-monophosphat 97.3 5.2E-05 1.8E-09 84.9 1.0 60 582-641 160-221 (503)
124 4af0_A Inosine-5'-monophosphat 97.2 0.00011 3.9E-09 80.9 2.3 71 585-659 140-213 (556)
125 2cu0_A Inosine-5'-monophosphat 97.1 0.0001 3.5E-09 82.2 1.2 59 582-640 149-207 (486)
126 4avf_A Inosine-5'-monophosphat 97.1 0.00014 4.9E-09 81.0 2.0 65 585-653 90-154 (490)
127 1vrd_A Inosine-5'-monophosphat 97.0 9.4E-05 3.2E-09 82.7 0.1 61 582-642 154-216 (494)
128 4avf_A Inosine-5'-monophosphat 97.0 0.0001 3.5E-09 82.2 0.0 58 582-639 146-205 (490)
129 1jcn_A Inosine monophosphate d 97.0 7.4E-05 2.5E-09 83.9 -1.3 69 585-654 110-181 (514)
130 4fxs_A Inosine-5'-monophosphat 96.8 0.00016 5.5E-09 80.7 -0.3 59 581-639 147-207 (496)
131 2cu0_A Inosine-5'-monophosphat 96.6 0.00061 2.1E-08 75.9 2.0 64 585-654 95-158 (486)
132 1jcn_A Inosine monophosphate d 96.4 0.00016 5.4E-09 81.2 -4.5 58 582-639 172-231 (514)
133 3ghd_A A cystathionine beta-sy 55.7 2.2 7.6E-05 33.6 -0.2 35 562-596 36-70 (70)
134 2ksf_A Sensor protein KDPD; me 22.5 85 0.0029 26.7 4.3 47 278-325 53-99 (107)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=5.3e-69 Score=621.80 Aligned_cols=484 Identities=22% Similarity=0.259 Sum_probs=372.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHHHHHHHHHHHHHHHHH-----
Q 005685 83 SAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----- 157 (683)
Q Consensus 83 ~~~~~~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lip~~gglivgl~----- 157 (683)
..++.+.++++++++|+++|+++++|+.++++++++....+ .+ .....+|+.|+++|++++++++++
T Consensus 3 ~~~~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (632)
T 3org_A 3 SLMYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKIS-----RL---AGRFAGYILYVVSGVALCLLSTFWCAVLS 74 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---SCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---hhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677889999999999999999999999999988642100 00 000123444567899999888876
Q ss_pred -----HHHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHh--hhc---CC
Q 005685 158 -----HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL--MME---NN 227 (683)
Q Consensus 158 -----~g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~--~~~---~~ 227 (683)
+|++|++..+++.... . .++.+.++.+.|++++++++++|+|+|||||+||+||++|+.+++ +|+ .+
T Consensus 75 p~a~GsGIp~v~~~l~g~~~~-~--~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~~ 151 (632)
T 3org_A 75 TEAEGSGLPQMKSILSGFYDK-M--RSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTD 151 (632)
T ss_dssp GGGCBCSHHHHHHHTTTTHHH-H--GGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHHHS
T ss_pred CccCCCCHHHHHHHHhCcccc-c--cccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhccccCC
Confidence 2567776666532100 1 134567788899999999999999999999999999999999999 776 46
Q ss_pred HHHHHHHHHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcc---ccccccc
Q 005685 228 RERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQS---AFTVPSY 304 (683)
Q Consensus 228 ~~~r~~l~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~---~f~~~~~ 304 (683)
+.+||.+++||+|||+||+|||||||++|++|+++++|+.++ .|+++++|++++++++.+.++.+ .|. +++
T Consensus 152 ~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~~~~~~~~~~~-~~~ 225 (632)
T 3org_A 152 RALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQA-----FWKGVLSALSGAIVYELLYTTPLVEAFEG-TNF 225 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTH-----HHHHHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHhccCcccccccc-ccc
Confidence 666778999999999999999999999999999998876554 46789999999999887665432 221 112
Q ss_pred ---CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhccccccc--ChHH
Q 005685 305 ---DLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYW--GFTN 379 (683)
Q Consensus 305 ---~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~--G~~~ 379 (683)
..+++.++ +++++|++||++|.+|++++.++.++ +++++.+.++++++++++++++. +.+|+..+. ++..
T Consensus 226 ~~~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--l~~p~~~g~~~~~~~ 300 (632)
T 3org_A 226 DASDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYEL--RMRHYPGTNRYFLVGVVALFASA--LQYPFRLFALDPRAT 300 (632)
T ss_dssp ---CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSTTCCTHHHHHHHHHHHHH--HTTTC------CHHH
T ss_pred cccCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcchhHHHHHHHHHHHHHH--HHHHHHhcCCcHHHH
Confidence 12466888 99999999999999999999988765 22222334567788888877654 467887654 4667
Q ss_pred HHHHHhcCCCC--CCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccch
Q 005685 380 VEEILHTGKTA--SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEP 457 (683)
Q Consensus 380 i~~~l~~~~~~--~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~ 457 (683)
+++++++.... ....+..|+.++++|+++|++|+|+|+|||+|+|++++||++|+++|.++..++ |.. .+|
T Consensus 301 i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~~----p~~---~~p 373 (632)
T 3org_A 301 INDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVF----GNA---IVP 373 (632)
T ss_dssp HHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHHH----CTT---SCH
T ss_pred HHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHhC----Ccc---cch
Confidence 77776532100 011222466778999999999999999999999999999999999998876543 432 478
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhcCCCCCCCccch
Q 005685 458 QAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDK 537 (683)
Q Consensus 458 ~~~alvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~yp~~~~~~~~ 537 (683)
+.||++||||++++++|+|++++ |++|+||++++++|+|+++++|+++++.++ +++||.+++.|++|+......
T Consensus 374 ~~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~~~~~lpl~ia~~~a~~v~~~~~----~~iY~~~~~~k~lp~l~~~~~- 447 (632)
T 3org_A 374 GSYAVVGAAAFTAGVTRALSCAV-IIFEVTGQIRHLVPVLISVLLAVIVGNAFN----RSLYETLVLMKHLPYMPILRR- 447 (632)
T ss_dssp HHHHHHHHHHHHHHHSCCTTHHH-HHHHHTCCCSCSHHHHHHHHHHHHHHHHHC----CCHHHHHHHHTTCCEEEEECT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHhcCCCccccccc-
Confidence 99999999999999999999976 899999999999999999999999999985 369999999999986510000
Q ss_pred hhhHhhccCCccchhhhhhhccccchhHHHHHHHHHHhhhcCCcccccccccc--cCceeecCCCCHHHHHHHHH-hCCC
Q 005685 538 NEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKLLQFSIPPCQVSRAMS--KDFVKVALTVTLKEAIESMK-DGQQ 614 (683)
Q Consensus 538 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~V~diM~--~~~~~v~~~~tl~ea~~~l~-~~~~ 614 (683)
+. .++ .+|+|+|+ +++++++++++++|+.+.|. ++++
T Consensus 448 ------------------------~~------~~~----------~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~ 487 (632)
T 3org_A 448 ------------------------DR------SPE----------MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNR 487 (632)
T ss_dssp ------------------------TC------CTT----------SBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTC
T ss_pred ------------------------cc------ccc----------CcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCc
Confidence 00 012 23999999 89999999999999999999 8999
Q ss_pred CEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 615 NCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 615 ~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+.+||+|++++++|+||++|+++.+.+
T Consensus 488 ~~~PVvd~~~~lvGiVt~~DL~~~l~~ 514 (632)
T 3org_A 488 LVFPVIDANGYLLGAISRKEIVDRLQH 514 (632)
T ss_dssp CEECBBCTTCBBCCEESHHHHTTTTTT
T ss_pred ceEEEEecCCeEEEEEEHHHHHHHHHH
Confidence 999999998999999999999987544
No 2
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=3.6e-64 Score=560.25 Aligned_cols=422 Identities=24% Similarity=0.329 Sum_probs=349.8
Q ss_pred chhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhh-HHHHHHHHHHHH
Q 005685 73 YVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADT-WHRILLIPVTGG 151 (683)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lip~~gg 151 (683)
.+..++.+++ ....+.+++.++++|+++|+++.+|+..+++++++++...... .....+ |+.++++|+++|
T Consensus 19 ~~~~~~~l~~-~~~~~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 90 (465)
T 1ots_A 19 RQLIRQLLER-DKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-------ADNYPLLLTVAFLCSAVLA 90 (465)
T ss_dssp HHHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccccccHHHHHHHHHHHHH
Confidence 3444555543 2334778899999999999999999999999999886532110 000123 333467899888
Q ss_pred HHHHHHH----------HHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHH
Q 005685 152 VIVGMMH----------GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFS 221 (683)
Q Consensus 152 livgl~~----------g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~ 221 (683)
++++++. |+++++..+++.. ++.+.++.+.|++++++++++|+|+|||||++|+|+++|+.++
T Consensus 91 ll~~~l~~~~~p~a~GsGip~v~~~l~~~~-------~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~ 163 (465)
T 1ots_A 91 MFGYFLVRKYAPEAGGSGIPEIEGALEDQR-------PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVL 163 (465)
T ss_dssp HHHHHHHHHHCGGGSSCSHHHHHHHHTTCS-------CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCCChHHHHHHHhCCC-------CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHH
Confidence 8887762 5677777776431 1233467789999999999999999999999999999999999
Q ss_pred hhhcC-CHHHHHHHHHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCccccc
Q 005685 222 LMMEN-NRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (683)
Q Consensus 222 ~~~~~-~~~~r~~l~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~ 300 (683)
|+++. ++++||.+++||+|||+||+||||++|++|++|+++++++.+.. ..+++++||++++++++.++|+++.|.
T Consensus 164 ~~~~l~~~~~~r~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~---~~~~~~~as~~a~~v~~~~~G~~~~f~ 240 (465)
T 1ots_A 164 DIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLI---SIKAVFIGVIMSTIMYRIFNHEVALID 240 (465)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCC---CHHHHHHHHHHHHHHHHHHSCSCCSSC
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHH---HHHHHHHHHHHHHHHHHHHcCCCceee
Confidence 99984 77777889999999999999999999999999999987765431 135688999999999999999999999
Q ss_pred ccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHH
Q 005685 301 VPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNV 380 (683)
Q Consensus 301 ~~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i 380 (683)
++.++..++.++++++++|++||++|.+|++.+.+.+++++++++...++++++++++|++++++++++|+.+|+||+.+
T Consensus 241 ~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~lG~G~~~i 320 (465)
T 1ots_A 241 VGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLI 320 (465)
T ss_dssp CCCCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGGSSCSTTHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHhHhhcCChHHHH
Confidence 88877777889999999999999999999999999999887664211122347899999999999999999999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHH
Q 005685 381 EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAY 460 (683)
Q Consensus 381 ~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~ 460 (683)
++++++. .....++.++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.+ +|+ ...+|+.|
T Consensus 321 ~~~~~~~-----~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~----~p~--~~~~~~~~ 389 (465)
T 1ots_A 321 PIATAGN-----FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL----FPQ--YHLEAGTF 389 (465)
T ss_dssp HHHHHTC-----SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHH----CGG--GTCCHHHH
T ss_pred HHHHcCC-----chHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHH----CCc--ccccHHHH
Confidence 9988753 345677888999999999999999999999999999999999999877654 343 23579999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhc
Q 005685 461 ALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLAR 526 (683)
Q Consensus 461 alvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~ 526 (683)
+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+++ +++|+.+++++
T Consensus 390 alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~~~~~---~~iY~~~l~~~ 452 (465)
T 1ots_A 390 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGG---KPLYSAILART 452 (465)
T ss_dssp HHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTC---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998864 46777775543
No 3
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=3.3e-63 Score=549.40 Aligned_cols=415 Identities=24% Similarity=0.345 Sum_probs=333.5
Q ss_pred hhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhhHHH---HHHHHHHHHH
Q 005685 76 ARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHR---ILLIPVTGGV 152 (683)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lip~~ggl 152 (683)
.++.+++ ....+.+++.++++|+++|+++.+|+..+++++++++...... ...+|+. +++++.++++
T Consensus 7 ~~~~~~~-~~~~~~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 76 (446)
T 4ene_A 7 IRQLLER-DKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT---------ADNYPLLLTVAFLCSAVLAM 76 (446)
T ss_dssp HHHHHTC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------SSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cccchHHHHHHHHHHHHHHH
Confidence 3444433 3444677889999999999999999999999999876532110 1122321 2233445566
Q ss_pred HHHHH----------HHHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHh
Q 005685 153 IVGMM----------HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL 222 (683)
Q Consensus 153 ivgl~----------~g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~ 222 (683)
+++++ +|++|++..+++. + ++.+.++.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 77 ~~~~l~~~~~p~a~GsGip~v~~~l~~~-----~--~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~ 149 (446)
T 4ene_A 77 FGYFLVRKYAPEAGGSGIPEIEGALEDQ-----R--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD 149 (446)
T ss_dssp HHHHHHHHHCGGGSSCSHHHHHHHHHTC-----S--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCCHHHHHHHHhCC-----C--ccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHH
Confidence 66655 1456666655532 1 22335677789999999999999999999999999999999999
Q ss_pred hhcCC-HHHHHHHHHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccc
Q 005685 223 MMENN-RERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTV 301 (683)
Q Consensus 223 ~~~~~-~~~r~~l~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~ 301 (683)
+++.+ +++|+.+++||+|||+||+||||++|++|++|+++++++.+.. ..++++++|++++++++.++|+++.|.+
T Consensus 150 ~~~~~~~~~r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~---~~~~~~~as~~a~~v~~~~~g~~~~~~~ 226 (446)
T 4ene_A 150 IFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLI---SIKAVFIGVIMSTIMYRIFNHEVALIDV 226 (446)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCC---CHHHHHHHHHHHHHHHHHTTTTCCSCCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHH---HHHHHHHHHHHHHHHHHHHcCCCceeec
Confidence 99965 4554589999999999999999999999999999877655211 1456899999999999999999999999
Q ss_pred cccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHH
Q 005685 302 PSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVE 381 (683)
Q Consensus 302 ~~~~~~~~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~ 381 (683)
++++..+..++++++++|++||++|.+|++.+.+.++++++++++...++++.+.++|+++|++++++|+.+|+||+.++
T Consensus 227 ~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~~~~p~~~G~G~~~i~ 306 (446)
T 4ene_A 227 GKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIP 306 (446)
T ss_dssp CCCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGGSSCCSTHHH
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHhhcCCcHHHHH
Confidence 88877778899999999999999999999999999998877653211112223346677889999999999999999999
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHH
Q 005685 382 EILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYA 461 (683)
Q Consensus 382 ~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~a 461 (683)
+.+++. ..+..|+.++++|+++|++|+|+|+|||+|+|++++||++|+++|..+..++ |.. ..+|+.|+
T Consensus 307 ~~~~~~-----~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~----p~~--~~~~~~~a 375 (446)
T 4ene_A 307 IATAGN-----FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELF----PQY--HLEAGTFA 375 (446)
T ss_dssp HHHTTC-----SCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHHC----GGG--TCCHHHHH
T ss_pred HHHcCC-----chHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHhC----Ccc--ccCHHHHH
Confidence 888543 3456778889999999999999999999999999999999999998876543 331 25799999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhh
Q 005685 462 LVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTL 524 (683)
Q Consensus 462 lvG~aA~~a~~~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~ 524 (683)
++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+++ +++||.+++
T Consensus 376 ~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~~~~---~~iY~~~l~ 435 (446)
T 4ene_A 376 IAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGG---KPLYSAILA 435 (446)
T ss_dssp HHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHHHhCC---CChHHHHHH
Confidence 999999999999999999999999999999999999999999999998864 457776543
No 4
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=1.2e-63 Score=554.39 Aligned_cols=404 Identities=24% Similarity=0.325 Sum_probs=337.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHhhhhhh---HHHHHHHHHHHHHHHHHH-----
Q 005685 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADT---WHRILLIPVTGGVIVGMM----- 157 (683)
Q Consensus 86 ~~~~l~~~~~liG~~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lip~~gglivgl~----- 157 (683)
.++.+++.++++|+++|+++++|+.++++++++++...... ...+ |..+++++.+++++++++
T Consensus 27 ~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~ 97 (466)
T 3nd0_A 27 LHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQIL---------APIPPLAWLVTALISGGMVALSFWLMKRFA 97 (466)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTSCTHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34567889999999999999999999999999876531100 0112 222233444555555543
Q ss_pred -----HHHHHHHHhhhcCCcccccCcccccchhhHHHHHHHHHHhhccCccCCchhHHHHHHHHHHHHHhhhcCCHHHHH
Q 005685 158 -----HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKI 232 (683)
Q Consensus 158 -----~g~~~v~~~i~~~~~~~~~g~~~~~~~~~~~k~i~~~~tlgsG~s~G~EGP~v~iGa~ig~~l~~~~~~~~~~r~ 232 (683)
+|+++++..+++.. ++.+.++...|++++++++++|+|+|||||++|+|+++|++++|+++.++++||
T Consensus 98 p~a~GsGIp~v~~~l~g~~-------~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~~~~~~~~~r 170 (466)
T 3nd0_A 98 PDTSGSGIPQIEGHLEGKL-------PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKATQENQR 170 (466)
T ss_dssp GGGSBCSHHHHHHHTTSSS-------CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCcCCCCHHHHHHHHcCCC-------CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHcCCChhHHH
Confidence 25777777665421 233356677899999999999999999999999999999999999998888888
Q ss_pred HHHHhhhhhhhhhhcccccchhhhheecccccccccCCCchhHHHHHHHHHHHHHHHHhhcCCcccccccccCccccchH
Q 005685 233 ALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAEL 312 (683)
Q Consensus 233 ~l~~~GaaAGiaa~F~aPi~G~lFa~E~~~~~~~~~~~~~~~~~~~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l 312 (683)
.+++||+|||+||+||||++|++|++|+++++++.+.. ..+++++||++++++++.++|+++.|.++.++..+..++
T Consensus 171 ~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~---~~~~~~~as~~a~~v~~~~~g~~~~f~~~~~~~~~~~~l 247 (466)
T 3nd0_A 171 ILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTL---AYHSLLFGCVMATIILRMIRGQSAIISLTEFKRVPLDSL 247 (466)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCT---THHHHHHHHHHHHHHHHHHTCSSCSSCCTTCCCCCGGGH
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHH---HHHHHHHHHHHHHHHHHHHcCCCCceecCCCCCCCHHHH
Confidence 99999999999999999999999999999887754432 245789999999999999999999999988777778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHHHhhcccccccChHHHHHHHhcCCCCCC
Q 005685 313 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASA 392 (683)
Q Consensus 313 ~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~iggl~~g~i~~~~P~~lg~G~~~i~~~l~~~~~~~~ 392 (683)
++++++|++||++|.+|++.+.+.+++++++++ .+++++++++|+++|++++++|+.+|+||+.+++++++.
T Consensus 248 ~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~~---~~~~~~~~l~g~~~g~l~~~~p~~~G~G~~~i~~~~~~~----- 319 (466)
T 3nd0_A 248 WMFIILGILFGVMGYTFNRGLFKVLDWFDRLPP---LATKWKGFLLGSIIGILSLFPLPLTDGGDNAVLWAFNSQ----- 319 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHHHHHHHHHTTSSSSCSSSSHHHHHHHTTSC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---ccHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHcCC-----
Confidence 999999999999999999999999888765432 345778889999999999999999999999999887542
Q ss_pred chHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHHHHHHHHHHHHHh
Q 005685 393 PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASV 472 (683)
Q Consensus 393 ~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~alvG~aA~~a~~ 472 (683)
..++.|+.++++|+++|++|+|+|+|||+|+|++++||++|+++|.++..+ +|+. ..+|+.|+++||+|+++++
T Consensus 320 ~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~----~p~~--~~~~~~~a~vGmaa~~a~v 393 (466)
T 3nd0_A 320 SHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLL----FPSQ--IPEPAVMAIAGMGALVAAT 393 (466)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHH----CTTT--CSSTHHHHHHTTSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHh----CCcc--ccCHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999999999999999999877654 4532 2579999999999999999
Q ss_pred hcchHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhhccccchhhhhhhh
Q 005685 473 CSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLA 525 (683)
Q Consensus 473 ~~~Plt~ivi~~Eltg~~~~l~P~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~ 525 (683)
+|+|+|++++++|+||++++++|+|+++++|+++++.+++ +++||.++++
T Consensus 394 ~~aPlt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~---~~iY~~~l~r 443 (466)
T 3nd0_A 394 VRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGG---KPIYTVLLER 443 (466)
T ss_dssp HSCHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCC---CCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHH
Confidence 9999999999999999999999999999999999998854 4688877654
No 5
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.53 E-value=1.3e-13 Score=153.14 Aligned_cols=188 Identities=20% Similarity=0.247 Sum_probs=144.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---Cchh----HHHhhhHHHHHHHHh-hcccccccChHHH
Q 005685 309 AAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG---LPPV----VCPALGGLGAGIIAL-RYPGILYWGFTNV 380 (683)
Q Consensus 309 ~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~---~~~~----~~~~iggl~~g~i~~-~~P~~lg~G~~~i 380 (683)
...+...+++|+++|+++.+|.+++++.++++........ .+.| +.+.++|++++.+.. +.|+.-|+|.+++
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~v 112 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEI 112 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhCccccCCChHHH
Confidence 3455677899999999999999999999887654422111 1222 234455666666554 5799989999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHH
Q 005685 381 EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAY 460 (683)
Q Consensus 381 ~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~ 460 (683)
++.++..+.. .. ....+.|++.+.+|+++|.+.|.++|+.++||++|..+++.+. . . ...+...+
T Consensus 113 ~~~l~~~~~~--~~----~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~~~------l-~--~~~~~r~l 177 (465)
T 1ots_A 113 EGALEDQRPV--RW----WRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFR------L-K--GDEARHTL 177 (465)
T ss_dssp HHHHTTCSCC--CH----HHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTT------C-C--SHHHHHHH
T ss_pred HHHHhCCCCC--Cc----HHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHHhc------c-C--CHHHHHHH
Confidence 9888754321 11 2345789999999999999999999999999999999987532 1 0 11356789
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHh-CCch--h--HHHHHHHHHHHHHHHHHhh
Q 005685 461 ALVGMAATLASVCSVPLTSVLLLFELT-RDYR--I--LLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 461 alvG~aA~~a~~~~~Plt~ivi~~Elt-g~~~--~--l~P~~~a~~~a~~v~~~~~ 511 (683)
..+|+||.+++++++|++++++.+|.. ++++ . +.|.+++++++.++++.+.
T Consensus 178 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 233 (465)
T 1ots_A 178 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN 233 (465)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999986 4443 4 8899999999999998764
No 6
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.51 E-value=6.5e-13 Score=146.79 Aligned_cols=188 Identities=20% Similarity=0.245 Sum_probs=141.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh---HHH----hhhHHHHHHHHh-hcccccccChHHH
Q 005685 309 AAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPV---VCP----ALGGLGAGIIAL-RYPGILYWGFTNV 380 (683)
Q Consensus 309 ~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~---~~~----~iggl~~g~i~~-~~P~~lg~G~~~i 380 (683)
...+...+++|+++|+.+.+|..++++.++++....+....++| +.+ .+++++++.+.. +.|+.-|+|.+++
T Consensus 18 ~~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v 97 (446)
T 4ene_A 18 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEI 97 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 35566778999999999999999999998887543222222211 111 223344444443 4699999999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchH-H
Q 005685 381 EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQ-A 459 (683)
Q Consensus 381 ~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~-~ 459 (683)
+..+++.+. ...+ .....|++.+.+|+++|.+.|.++|+.++||++|..+++.+. .+ ..+.. .
T Consensus 98 ~~~l~~~~~---~~~~---r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~~~------~~----~~~~r~~ 161 (446)
T 4ene_A 98 EGALEDQRP---VRWW---RVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFR------LK----GDEARHT 161 (446)
T ss_dssp HHHHHTCSC---CCHH---HHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTT------CC----SHHHHHH
T ss_pred HHHHhCCCc---cchH---HHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHHHcC------CC----HHHHHHH
Confidence 888875332 2211 245689999999999999999999999999999998886532 11 12444 8
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhC-Cc----hhHHHHHHHHHHHHHHHHHhhh
Q 005685 460 YALVGMAATLASVCSVPLTSVLLLFELTR-DY----RILLPLMGAVGLAIWVPSVANQ 512 (683)
Q Consensus 460 ~alvG~aA~~a~~~~~Plt~ivi~~Eltg-~~----~~l~P~~~a~~~a~~v~~~~~~ 512 (683)
+..+|+||.+++++++|++++++.+|... ++ ..+.|.+++++++.++++.++.
T Consensus 162 ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~g 219 (446)
T 4ene_A 162 LLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNH 219 (446)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999874 33 3488999999999999988753
No 7
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.50 E-value=3.4e-13 Score=149.63 Aligned_cols=187 Identities=19% Similarity=0.231 Sum_probs=140.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCchhHHHh-hhH---HHHHHHH-hhcccccccChHHH
Q 005685 309 AAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKF---GLPPVVCPA-LGG---LGAGIIA-LRYPGILYWGFTNV 380 (683)
Q Consensus 309 ~~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~~---~~~~~~~~~-igg---l~~g~i~-~~~P~~lg~G~~~i 380 (683)
...+...+++|+++|+++.+|..++++.++++....+.. .++.|+.+. +++ ++.+.+. .+.|+.-|+|.+++
T Consensus 29 ~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~p~a~GsGIp~v 108 (466)
T 3nd0_A 29 PRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSGIPQI 108 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCTHHHHHHHHHHHHHHHHHHHHHTTTCGGGSBCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCCHHHH
Confidence 345667789999999999999999999988876442222 122233333 222 2233233 45688889999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHHHHHHHHhhhCCCCccccchHHH
Q 005685 381 EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAY 460 (683)
Q Consensus 381 ~~~l~~~~~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~~~~~~~~~~~p~~~~~~~~~~~ 460 (683)
+..+++.+. +.. ...+..|++.+.+|+++|.+.|.++|+.++||++|..+++.+. .+ ..+...+
T Consensus 109 ~~~l~g~~~---~~~---~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~~~------~~----~~~~r~l 172 (466)
T 3nd0_A 109 EGHLEGKLP---LVW---QRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFK------AT----QENQRIL 172 (466)
T ss_dssp HHHTTSSSC---CCH---HHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHHTT------CC----HHHHHHH
T ss_pred HHHHcCCCC---Cch---HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHcC------CC----hhHHHHH
Confidence 888865432 211 1345689999999999999999999999999999999987532 11 1356889
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHh-CCc----hhHHHHHHHHHHHHHHHHHhh
Q 005685 461 ALVGMAATLASVCSVPLTSVLLLFELT-RDY----RILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 461 alvG~aA~~a~~~~~Plt~ivi~~Elt-g~~----~~l~P~~~a~~~a~~v~~~~~ 511 (683)
..+|+||.+++++++|++++++.+|.. +++ ..+.|.+++++++.++++.+.
T Consensus 173 l~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 228 (466)
T 3nd0_A 173 IAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRMIR 228 (466)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999975 444 236799999999999998875
No 8
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.48 E-value=3.1e-13 Score=156.05 Aligned_cols=191 Identities=18% Similarity=0.076 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCc-hhHHHhhhHHHHHHHH-hhcccccccChHHHHHH
Q 005685 310 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEK----FGLP-PVVCPALGGLGAGIIA-LRYPGILYWGFTNVEEI 383 (683)
Q Consensus 310 ~~l~~~illGil~Gl~g~lf~~~~~~~~~~~~~~~~~----~~~~-~~~~~~iggl~~g~i~-~~~P~~lg~G~~~i~~~ 383 (683)
..+.+.+++|++.|+++.+|..++.++.+++..+.+. ..+. +++.+++++++.+.+. .+.|+.-|+|.++++..
T Consensus 9 r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~ 88 (632)
T 3org_A 9 RLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSI 88 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHH
Confidence 4456678999999999999999999988876433221 1111 2234566677777665 67899999999998877
Q ss_pred HhcCC--CCCCchHHHHHHHHHHHHHHHHHhhccCCccccchhHhHHHHHHHHHHHH--HHHHHHhhhCCCCccccchHH
Q 005685 384 LHTGK--TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGG--SAAEIINSAIPGNVAVAEPQA 459 (683)
Q Consensus 384 l~~~~--~~~~~~~~~L~~~~~~K~~~t~lt~g~G~~gG~f~Psl~iGA~~G~~~g~--~~~~~~~~~~p~~~~~~~~~~ 459 (683)
++... .....+ ...++.|++.+.+|+|+|.+.|.++|++++||++|..+++ .+..... ...+...
T Consensus 89 l~g~~~~~~~~~~----~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~-------~~~~~r~ 157 (632)
T 3org_A 89 LSGFYDKMRSALE----LRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCT-------DRALRLQ 157 (632)
T ss_dssp TTTTHHHHGGGGS----HHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHHH-------SHHHHHH
T ss_pred HhCcccccccccc----HHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhccccC-------CHHHHHH
Confidence 75321 001112 2346799999999999999999999999999999997776 4432110 0124568
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhCC-c--hhHHHHHHHHHHHHHHHHHhh
Q 005685 460 YALVGMAATLASVCSVPLTSVLLLFELTRD-Y--RILLPLMGAVGLAIWVPSVAN 511 (683)
Q Consensus 460 ~alvG~aA~~a~~~~~Plt~ivi~~Eltg~-~--~~l~P~~~a~~~a~~v~~~~~ 511 (683)
+..+|+||.+|+++++|++++++.+|.... + ..+.|.+++++++.++++.++
T Consensus 158 ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~ 212 (632)
T 3org_A 158 TLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLY 212 (632)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999853 2 467899999998888866543
No 9
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=98.71 E-value=2.5e-08 Score=90.17 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=64.4
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCC-CCcCCCCcccccc
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSD-NSKGDSIASDVCN 658 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~-~~v~~~~~~~i~~ 658 (683)
.+.+++|+|.+++++++++++++|+.+.|.+++++.+||+|+ ++++|+||.+|+.+.+.+.... .++.++|.++..+
T Consensus 3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~ 80 (128)
T 3gby_A 3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVRS 80 (128)
T ss_dssp TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBCCCC
T ss_pred cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCCCcE
Confidence 456699999999999999999999999999999999999998 9999999999999886544332 4566666655443
No 10
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.67 E-value=4.9e-08 Score=90.58 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=63.4
Q ss_pred CCccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhhccCCCCcCCCC
Q 005685 579 SIPPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSI 652 (683)
Q Consensus 579 ~~~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~~~~~~~v~~~~ 652 (683)
+..+.+|+|+|++ ++++++++++++|+.+.|.+++++.+||+|++ ++++|+||.+|+.+.+.+.. +.++.++|
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-~~~v~~~m 94 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-KIELEEIL 94 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-CCCGGGTC
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-CccHHHhc
Confidence 3455669999999 99999999999999999999999999999987 79999999999999865443 45667777
No 11
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=98.67 E-value=1.7e-08 Score=96.19 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=53.1
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
.+|+|+|+++++++++++|+.|+.+.|.+++++++||+|++|+++|+||.+|+++.
T Consensus 18 ~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~ 73 (170)
T 4esy_A 18 VPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRG 73 (170)
T ss_dssp SBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGG
T ss_pred CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999765
No 12
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=98.59 E-value=6.6e-08 Score=86.19 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=62.7
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCcccccc
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVCN 658 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~~ 658 (683)
+|+|+|.+++++++++++++++.+.|.+++.+.+||+|++++++|+|+.+|+.+.+.+.. .++.++|.++..+
T Consensus 2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~--~~v~~~~~~~~~~ 74 (122)
T 3kpb_A 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK--KTIEEIMTRNVIT 74 (122)
T ss_dssp BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTC--CBGGGTSBSSCCC
T ss_pred chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcc--cCHHHHhcCCCeE
Confidence 489999999999999999999999999999999999998899999999999999865433 2566777655443
No 13
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.59 E-value=1.1e-07 Score=86.80 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=63.2
Q ss_pred CcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH-HHhhc-cCCCCcCCCCccccc
Q 005685 580 IPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR-CLSKL-SSDNSKGDSIASDVC 657 (683)
Q Consensus 580 ~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~-~~~~~-~~~~~v~~~~~~~i~ 657 (683)
....+++|+|.++++++++++++.|+.+.|.+++.+.+||+|++++++|+||.+|+.+ .+.+. ..+.++.++|.++..
T Consensus 4 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~ 83 (138)
T 2yzi_A 4 DMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLI 83 (138)
T ss_dssp CTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCC
T ss_pred hhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhCCCe
Confidence 3455699999999999999999999999999999999999998899999999999974 44332 234456666655443
No 14
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.58 E-value=1.3e-07 Score=86.71 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=62.4
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCC--eEEEEEeHHHHHHHHhhcc-CCCCcCCCCccccc
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED--FLEGILTYGDIKRCLSKLS-SDNSKGDSIASDVC 657 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~--~lvGiVt~~dl~~~~~~~~-~~~~v~~~~~~~i~ 657 (683)
.+++|+|.+++++++++++++|+.+.|.+++.+.+||+|+++ +++|+||.+|+.+.+.+.. .+.++.++|.++..
T Consensus 5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~ 82 (141)
T 2rih_A 5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPIT 82 (141)
T ss_dssp CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCCE
T ss_pred eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCCCe
Confidence 349999999999999999999999999999999999999887 9999999999999865432 24455666655433
No 15
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.58 E-value=1.2e-07 Score=76.92 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=49.3
Q ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh-hcc--CCCCcCCCCcccc
Q 005685 593 FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS-KLS--SDNSKGDSIASDV 656 (683)
Q Consensus 593 ~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~-~~~--~~~~v~~~~~~~i 656 (683)
++++++++++.|+.+.|.+++.+++||+|+ ++++||||.+|+.+.+. +.. .+.++.++|.+++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~ 67 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNP 67 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence 578999999999999999999999999984 89999999999987642 222 1334455555443
No 16
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=98.56 E-value=1.8e-07 Score=84.80 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=62.9
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccC-CCCcCCCCccccc
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS-DNSKGDSIASDVC 657 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~-~~~v~~~~~~~i~ 657 (683)
+.+++|+|.++++++++++++.|+.+.|.+++.+.+||+| +++++|+|+.+|+.+.+.+... +.++.++|.++..
T Consensus 3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~ 78 (133)
T 2ef7_A 3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLI 78 (133)
T ss_dssp CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCC
T ss_pred cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCCCCE
Confidence 4569999999999999999999999999999999999999 7999999999999988655432 4556666654443
No 17
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=98.55 E-value=4.8e-08 Score=88.61 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=60.1
Q ss_pred cccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 582 PCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 582 ~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
+.+|+|+|++ ++++++++++++|+.+.|.+++++.+||+|++ ++++|+||.+|+.+...+...+.++.++|.
T Consensus 5 ~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m~ 79 (130)
T 3i8n_A 5 DVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVMR 79 (130)
T ss_dssp --CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHSE
T ss_pred cCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHhc
Confidence 3449999995 56689999999999999999999999999987 899999999999999765554555666663
No 18
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=98.54 E-value=1.1e-07 Score=93.92 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=59.3
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcC--CCC-ccccc
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKG--DSI-ASDVC 657 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~--~~~-~~~i~ 657 (683)
++.+++++|+++++++++++++.++.+.|.+++.+.+||||++|+++|+||.+|+++.+.++..+.... ... .++..
T Consensus 114 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~ed~~~~~g~~~~~~~~ 193 (205)
T 3kxr_A 114 PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEAQLMATAGMDESDDLF 193 (205)
T ss_dssp TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC----------------
T ss_pred CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHHHHHHhcCCCcccccC
Confidence 456699999999999999999999999999999999999999999999999999999987666532211 111 23344
Q ss_pred cccceeecchh
Q 005685 658 NCCLTFLNSRS 668 (683)
Q Consensus 658 ~~~v~~~~~r~ 668 (683)
++.+...++|.
T Consensus 194 ~~~~~~~k~R~ 204 (205)
T 3kxr_A 194 APILKGAQRRA 204 (205)
T ss_dssp -----------
T ss_pred CCHHHHHHhhC
Confidence 44555666664
No 19
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.54 E-value=9.2e-08 Score=88.87 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=62.0
Q ss_pred cccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc--CCCCcCCCCcccc
Q 005685 584 QVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS--SDNSKGDSIASDV 656 (683)
Q Consensus 584 ~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~--~~~~v~~~~~~~i 656 (683)
+|+|+|.+ +++++++++++.|+.+.|.+++++.+||+|++++++|+||.+|+.+.+.+.. .+.++.++|.+++
T Consensus 29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~ 105 (149)
T 3k2v_A 29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGG 105 (149)
T ss_dssp BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESC
T ss_pred CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCC
Confidence 49999999 9999999999999999999999999999998899999999999999875533 2445556655444
No 20
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.53 E-value=1.8e-07 Score=75.04 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=51.8
Q ss_pred CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc---cCCCCcCCCCcccc
Q 005685 592 DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL---SSDNSKGDSIASDV 656 (683)
Q Consensus 592 ~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~---~~~~~v~~~~~~~i 656 (683)
++++++++++++|+++.|.+++++.+||+|+ ++++|+||.+|+.+.+..+ ..+.++.++|.+++
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~ 67 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNP 67 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHcCCCcccCCHHHhcCCCC
Confidence 3578999999999999999999999999997 9999999999999985433 22345556665543
No 21
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=98.53 E-value=1.6e-07 Score=89.66 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=61.8
Q ss_pred CCcccccccccc--cCceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhhccCCCCcCCCCccc
Q 005685 579 SIPPCQVSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 655 (683)
Q Consensus 579 ~~~~~~V~diM~--~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~ 655 (683)
.....+|+|+|+ ++++++++++++.++++.|.+++++.+||+|++ ++++|+||.+|+.+...+.. +.++.++| .+
T Consensus 38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-~~~v~~im-~~ 115 (172)
T 3lhh_A 38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-RLELVDLV-KN 115 (172)
T ss_dssp -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-CCCGGGGC-BC
T ss_pred ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-cccHHHHh-cC
Confidence 445566999999 788999999999999999999999999999987 89999999999999865432 45666777 44
Q ss_pred cc
Q 005685 656 VC 657 (683)
Q Consensus 656 i~ 657 (683)
+.
T Consensus 116 ~~ 117 (172)
T 3lhh_A 116 CN 117 (172)
T ss_dssp CE
T ss_pred Ce
Confidence 43
No 22
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=98.52 E-value=9.9e-08 Score=89.98 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=67.7
Q ss_pred hhhhhcccc--chhHHHHHHHHHHhhhc---CCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEE
Q 005685 553 LSVVENAAD--SEAAEEMLLEELKLLQF---SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLE 627 (683)
Q Consensus 553 L~~~~~~~~--~~~~~~~~L~~l~~~~~---~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lv 627 (683)
+++++...+ |.....+++..+..... ...+.+++++|.++++++++++++.++.+.|.+++ .+||||++|+++
T Consensus 51 ~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~ 128 (156)
T 3k6e_A 51 VPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQ 128 (156)
T ss_dssp EEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEE
T ss_pred EEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEE
Confidence 455554333 55556666555443222 23456799999999999999999999999998664 599999999999
Q ss_pred EEEeHHHHHHHHhhccC
Q 005685 628 GILTYGDIKRCLSKLSS 644 (683)
Q Consensus 628 GiVt~~dl~~~~~~~~~ 644 (683)
|+||++|+++.+....+
T Consensus 129 GiiT~~Dil~~~~~~~~ 145 (156)
T 3k6e_A 129 GIITRKSILKAVNALLH 145 (156)
T ss_dssp EEEEHHHHHHHHHHHSC
T ss_pred EEEEHHHHHHHHHHHhc
Confidence 99999999999766544
No 23
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=98.51 E-value=1.5e-07 Score=85.81 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=62.4
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHH-HHHHhhc-cCCCCcCCCCccccc
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI-KRCLSKL-SSDNSKGDSIASDVC 657 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl-~~~~~~~-~~~~~v~~~~~~~i~ 657 (683)
+.+++|+|++++++++++++++|+.+.|.+++.+.+||+|++++++|+|+.+|+ .+.+.+. ..+.++.++|.++..
T Consensus 7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~ 84 (138)
T 2p9m_A 7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVI 84 (138)
T ss_dssp TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCSSCC
T ss_pred cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCCCcE
Confidence 345999999999999999999999999999999999999988999999999999 8875432 234455566654433
No 24
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=98.50 E-value=1.7e-07 Score=86.97 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=60.6
Q ss_pred cccccc--cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh-------ccCCCCcCCCCccc
Q 005685 585 VSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK-------LSSDNSKGDSIASD 655 (683)
Q Consensus 585 V~diM~--~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~-------~~~~~~v~~~~~~~ 655 (683)
|+|+|+ ++++++++++++.++.+.|.+++++.+||+|++++++|+||.+|+.+.+.+ ...+.++.++|..+
T Consensus 17 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~ 96 (150)
T 3lqn_A 17 VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQD 96 (150)
T ss_dssp HHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTCBSS
T ss_pred hhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHHHhcCC
Confidence 999999 569999999999999999999999999999988999999999999998632 12234556666554
Q ss_pred cc
Q 005685 656 VC 657 (683)
Q Consensus 656 i~ 657 (683)
..
T Consensus 97 ~~ 98 (150)
T 3lqn_A 97 IP 98 (150)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 25
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=98.50 E-value=4.5e-08 Score=88.39 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=61.3
Q ss_pred cccccccccC--ceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhhccCCCCcCCCCcc
Q 005685 583 CQVSRAMSKD--FVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 654 (683)
Q Consensus 583 ~~V~diM~~~--~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~ 654 (683)
.+|+|+|+++ +++++++++++|+.+.|.+++++.+||+|++ ++++|+||.+|+.+.+.+...+.++.++|.+
T Consensus 3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~~ 77 (127)
T 3nqr_A 3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRT 77 (127)
T ss_dssp CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHCBC
T ss_pred cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHcCC
Confidence 4599999955 9999999999999999999999999999987 7999999999999886554445566666643
No 26
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=98.50 E-value=1.4e-07 Score=84.35 Aligned_cols=73 Identities=18% Similarity=0.305 Sum_probs=60.8
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc--CCCCcCCCCccccc
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS--SDNSKGDSIASDVC 657 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~--~~~~v~~~~~~~i~ 657 (683)
+++|+|++++++++++++++|+.+.|.+++.+.+||+| +++++|+|+.+|+.+.+.+.. .+.++.++|.++..
T Consensus 2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~ 76 (125)
T 1pbj_A 2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV 76 (125)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCCe
Confidence 38899999999999999999999999999999999999 899999999999998865432 23455566654433
No 27
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=98.49 E-value=2.2e-07 Score=87.93 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=65.9
Q ss_pred ccccccccccc---CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc---cCCCCcCCCCcc
Q 005685 581 PPCQVSRAMSK---DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL---SSDNSKGDSIAS 654 (683)
Q Consensus 581 ~~~~V~diM~~---~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~---~~~~~v~~~~~~ 654 (683)
...+|+|+|++ +++++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+.+.+.+. ..+.++.++|..
T Consensus 22 ~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~ 101 (165)
T 3fhm_A 22 MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTK 101 (165)
T ss_dssp SSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTSBS
T ss_pred hhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHhcC
Confidence 34559999996 799999999999999999999999999999889999999999999885443 335667777776
Q ss_pred ccccc
Q 005685 655 DVCNC 659 (683)
Q Consensus 655 ~i~~~ 659 (683)
++.+.
T Consensus 102 ~~~~v 106 (165)
T 3fhm_A 102 NVVRC 106 (165)
T ss_dssp SCCCB
T ss_pred CCeEE
Confidence 55544
No 28
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.48 E-value=1.7e-07 Score=88.29 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=54.5
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
.+|+|+|+++++++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+.+.+.
T Consensus 5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~ 62 (160)
T 2o16_A 5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE 62 (160)
T ss_dssp CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence 4599999999999999999999999999999999999998899999999999998854
No 29
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=98.48 E-value=2.4e-07 Score=86.68 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+.+++++.+........+.+++++|.+++.++++++++.++++.|.+++.+.+||+| +++++|+||++|+.+.+.+
T Consensus 57 Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~ 135 (157)
T 4fry_A 57 GIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIA 135 (157)
T ss_dssp EEEEHHHHHHHSGGGTCCSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHT
T ss_pred EEEEHHHHHHHHHhccCCccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence 555666666665433334456779999999999999999999999999999999999999 7999999999999999765
Q ss_pred ccC
Q 005685 642 LSS 644 (683)
Q Consensus 642 ~~~ 644 (683)
+..
T Consensus 136 ~~~ 138 (157)
T 4fry_A 136 DQQ 138 (157)
T ss_dssp TCC
T ss_pred HHH
Confidence 544
No 30
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=98.47 E-value=9.1e-08 Score=106.54 Aligned_cols=101 Identities=22% Similarity=0.203 Sum_probs=77.1
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCC--CcCCC---Cccc
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDN--SKGDS---IASD 655 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~--~v~~~---~~~~ 655 (683)
++.+++|+|++++++++++++++|+.+.|.+++.+.+||+|++|+++|+||.+|+.+.+.++..+. ..... ...+
T Consensus 217 ~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e~~ed~~~~~~i~~~~~~~ 296 (473)
T 2zy9_A 217 PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEATEDIHKLGAVDVPDLVY 296 (473)
T ss_dssp TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHHHHHHHHHHTTCCCTTCCS
T ss_pred CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHHhhhhhhhccccccCcchh
Confidence 456799999999999999999999999999999999999999999999999999999865433210 00111 0123
Q ss_pred cccccceeecchhhHHHHHHHHHhhh
Q 005685 656 VCNCCLTFLNSRSLSLLCLSISLLMT 681 (683)
Q Consensus 656 i~~~~v~~~~~r~~~l~~l~~~~~~~ 681 (683)
..+......++|..|++.+++..+.+
T Consensus 297 ~~~~v~~~~~~R~~wl~~~~~~~~l~ 322 (473)
T 2zy9_A 297 SEAGPVALWLARVRWLVILILTGMVT 322 (473)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344557789999999887766543
No 31
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=98.46 E-value=2.6e-07 Score=86.30 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=61.3
Q ss_pred cccccc--cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc------CCCCcCCCCcccc
Q 005685 585 VSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS------SDNSKGDSIASDV 656 (683)
Q Consensus 585 V~diM~--~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~------~~~~v~~~~~~~i 656 (683)
++|+|+ ++++++++++++.++.+.|.+++++.+||+|++++++|+||.+|+.+.+.... .+.++.++|..++
T Consensus 17 v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~~ 96 (156)
T 3ctu_A 17 EETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKTDV 96 (156)
T ss_dssp GGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGGCBCSC
T ss_pred HHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccccccccccCcHHHhccCCc
Confidence 999999 78999999999999999999999999999998899999999999999864322 2455666665544
Q ss_pred cc
Q 005685 657 CN 658 (683)
Q Consensus 657 ~~ 658 (683)
.+
T Consensus 97 ~~ 98 (156)
T 3ctu_A 97 AV 98 (156)
T ss_dssp CC
T ss_pred ee
Confidence 43
No 32
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=98.46 E-value=2.9e-07 Score=85.86 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=62.5
Q ss_pred cccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh-------ccCCCCcCCCC
Q 005685 582 PCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK-------LSSDNSKGDSI 652 (683)
Q Consensus 582 ~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~-------~~~~~~v~~~~ 652 (683)
..+|+|+|.+ +++++++++++.++.+.|.+++++.+||+|++++++|+||.+|+.+.+.. ...+.++.++|
T Consensus 10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m 89 (157)
T 2emq_A 10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEEVM 89 (157)
T ss_dssp CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGGTC
T ss_pred hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHHHh
Confidence 3459999997 89999999999999999999999999999988999999999999988543 12344556666
Q ss_pred ccccc
Q 005685 653 ASDVC 657 (683)
Q Consensus 653 ~~~i~ 657 (683)
.+++.
T Consensus 90 ~~~~~ 94 (157)
T 2emq_A 90 NRNIP 94 (157)
T ss_dssp BCCCC
T ss_pred CCCCc
Confidence 55443
No 33
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=98.46 E-value=2.4e-07 Score=84.27 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+.+++++.+........+.+++|+|.+++.++++++++.++.+.|.+++.+.+||+| +++++|+||++|+.+.+.+
T Consensus 53 Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 53 GILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp EEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred EEEehHHHHHHHHHcCCCcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence 555556665544322223456779999999999999999999999999999999999999 7999999999999998654
Q ss_pred c
Q 005685 642 L 642 (683)
Q Consensus 642 ~ 642 (683)
+
T Consensus 132 ~ 132 (135)
T 2rc3_A 132 Q 132 (135)
T ss_dssp -
T ss_pred c
Confidence 3
No 34
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=98.46 E-value=1e-07 Score=87.21 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=60.7
Q ss_pred cccccccc--cCceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhh-ccCCCCcCCCCcc
Q 005685 583 CQVSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSK-LSSDNSKGDSIAS 654 (683)
Q Consensus 583 ~~V~diM~--~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~-~~~~~~v~~~~~~ 654 (683)
.+|+|+|+ ++++++++++++.++++.|.+++++.+||+|++ ++++|+||.+|+++.+.+ ...+.++.++|.+
T Consensus 3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~ 78 (136)
T 3lfr_A 3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRP 78 (136)
T ss_dssp CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBC
T ss_pred CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCC
Confidence 45999999 678999999999999999999999999999987 799999999999988652 2334556667644
No 35
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=98.46 E-value=2.8e-07 Score=82.07 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+.+++++.+.. ...+++++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+++.+
T Consensus 46 G~vt~~dl~~~~~~-----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 46 GIITSWDIAKALAQ-----NKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp EEECHHHHHHHHHT-----TCCBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred EEEEHHHHHHHHHh-----cccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 55555555554432 1226999999999999999999999999999999999999988999999999999998654
No 36
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=98.45 E-value=2.3e-07 Score=94.50 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=56.5
Q ss_pred CcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC--CeEEEEEeHHHHHHHHhhc
Q 005685 580 IPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE--DFLEGILTYGDIKRCLSKL 642 (683)
Q Consensus 580 ~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~--~~lvGiVt~~dl~~~~~~~ 642 (683)
..+.+|+|+|+++++++++++++.++.++|.+++++++||||++ ++++|+|++.||++++...
T Consensus 10 ~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~ 74 (250)
T 2d4z_A 10 KYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR 74 (250)
T ss_dssp CSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred cCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence 34566999999999999999999999999999999999999974 6899999999999986543
No 37
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=98.45 E-value=2.6e-07 Score=87.45 Aligned_cols=81 Identities=23% Similarity=0.217 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+.+++++.+..........+++++|.++++++++++++.++++.|.+++.+.+||+|+ ++++|+||++|+.+.+.+
T Consensus 72 Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~ 150 (165)
T 3fhm_A 72 GIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG 150 (165)
T ss_dssp EEEEHHHHHHHHHHHGGGGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred EEEEHHHHHHHHHhcCCccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 5556666666554332234456799999999999999999999999999999999999998 999999999999999655
Q ss_pred cc
Q 005685 642 LS 643 (683)
Q Consensus 642 ~~ 643 (683)
+.
T Consensus 151 ~~ 152 (165)
T 3fhm_A 151 EI 152 (165)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 38
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=98.45 E-value=2.7e-07 Score=86.69 Aligned_cols=70 Identities=21% Similarity=0.155 Sum_probs=59.1
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh--ccCCCCcCCCCcc
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK--LSSDNSKGDSIAS 654 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~--~~~~~~v~~~~~~ 654 (683)
+|+|+|++ ++++++++++.|+.+.|.+++++.+||+|++++++|+||.+|+.+.+.. ...+.++.++|.+
T Consensus 18 ~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~ 89 (159)
T 3fv6_A 18 QVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTR 89 (159)
T ss_dssp BGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEE
T ss_pred CHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcC
Confidence 39999998 5599999999999999999999999999988999999999999997532 2234566677665
No 39
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=98.43 E-value=3.7e-07 Score=86.00 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=60.2
Q ss_pred ccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc------CCCCcCCCCcccc
Q 005685 585 VSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS------SDNSKGDSIASDV 656 (683)
Q Consensus 585 V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~------~~~~v~~~~~~~i 656 (683)
++++|.+ +++++++++|+++++++|.+++++.+||+|++++++|+||.+|+.++..... .+.++.+.|.+++
T Consensus 17 ~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~~~ 96 (156)
T 3k6e_A 17 EETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKTDV 96 (156)
T ss_dssp GGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBCSC
T ss_pred HHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcCCc
Confidence 8899985 7999999999999999999999999999998899999999999998853322 2345556665554
Q ss_pred ccc
Q 005685 657 CNC 659 (683)
Q Consensus 657 ~~~ 659 (683)
.+.
T Consensus 97 ~~v 99 (156)
T 3k6e_A 97 AVV 99 (156)
T ss_dssp CCB
T ss_pred eec
Confidence 443
No 40
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=98.42 E-value=3.4e-07 Score=85.24 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=67.7
Q ss_pred hhhhhcccc--chhHHHHHHHHHHhhhcCCcccccccccc------cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCC
Q 005685 553 LSVVENAAD--SEAAEEMLLEELKLLQFSIPPCQVSRAMS------KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED 624 (683)
Q Consensus 553 L~~~~~~~~--~~~~~~~~L~~l~~~~~~~~~~~V~diM~------~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~ 624 (683)
+++++.+.+ +....++++..+....+...+.+++++|. ++++++++++++.++.+.|.+++.+.+||+|++|
T Consensus 55 ~pVvd~~~~~vGivt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 134 (152)
T 2uv4_A 55 LPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDEND 134 (152)
T ss_dssp EEEECTTSBEEEEEEHHHHHHHHHCSSCCCTTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred EeEECCCCcEEEEEeHHHHHHHhcchhhhhhcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCC
Confidence 345543322 55566666655442222234566999997 8899999999999999999999999999999889
Q ss_pred eEEEEEeHHHHHHHHh
Q 005685 625 FLEGILTYGDIKRCLS 640 (683)
Q Consensus 625 ~lvGiVt~~dl~~~~~ 640 (683)
+++|+||++|+.+.+.
T Consensus 135 ~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 135 VVKGIVSLSDILQALV 150 (152)
T ss_dssp BEEEEEEHHHHHHHHC
T ss_pred eEEEEEEHHHHHHHHH
Confidence 9999999999998863
No 41
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=98.41 E-value=2e-07 Score=84.43 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=59.2
Q ss_pred ccccccccc--cCceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 582 PCQVSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 582 ~~~V~diM~--~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
+.+|+|+|+ +++++++++++++|+.+.|.+++++.+||+|++ ++++|+||.+|+.+.... .+.++.++|.
T Consensus 4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~--~~~~v~~~m~ 76 (129)
T 3jtf_A 4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE--PALDIRSLVR 76 (129)
T ss_dssp CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC--TTSCGGGGCB
T ss_pred CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc--CCcCHHHHhC
Confidence 456999999 678999999999999999999999999999986 899999999999887542 2345566664
No 42
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.41 E-value=3.8e-07 Score=85.41 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=53.3
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCE-EEEEecCCeEEEEEeHHHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNC-VLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~-lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
..+|+|+|+++++++++++++.|+.+.|.+++.+. +||+|++ +++|+||.+|+.+.+
T Consensus 15 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~ 72 (157)
T 1o50_A 15 VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVS 72 (157)
T ss_dssp HHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHH
T ss_pred cccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHH
Confidence 34499999999999999999999999999999999 9999987 999999999999874
No 43
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.40 E-value=4.4e-07 Score=84.03 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=66.2
Q ss_pred hhhhhcc-cc--chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEE
Q 005685 553 LSVVENA-AD--SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGI 629 (683)
Q Consensus 553 L~~~~~~-~~--~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGi 629 (683)
+++++.+ .+ +....++++..+.... +.+++++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+
T Consensus 59 ~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Gi 133 (148)
T 3lv9_A 59 YPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGV 133 (148)
T ss_dssp EEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEE
T ss_pred EEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEE
Confidence 4455543 22 5556666655543221 45699999 899999999999999999999999999999998999999
Q ss_pred EeHHHHHHHHh
Q 005685 630 LTYGDIKRCLS 640 (683)
Q Consensus 630 Vt~~dl~~~~~ 640 (683)
||++|+.+.+-
T Consensus 134 it~~dil~~l~ 144 (148)
T 3lv9_A 134 VTIEDILEEIV 144 (148)
T ss_dssp EEHHHHHHHHH
T ss_pred EEHHHHHHHHh
Confidence 99999999854
No 44
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=98.39 E-value=6e-07 Score=86.54 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=62.3
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh---ccCCCCcCCCCccccc
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK---LSSDNSKGDSIASDVC 657 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~---~~~~~~v~~~~~~~i~ 657 (683)
.+|+|+|++++++++++++++|+.+.|.+++++.+||+|++++++|+||.+|+.+.+.. ...+.++.++|.++..
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~~ 86 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIP 86 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCC
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCCc
Confidence 34999999999999999999999999999999999999988999999999999988543 2223456666665443
No 45
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=98.39 E-value=2.5e-07 Score=86.83 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=55.2
Q ss_pred cccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 582 PCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 582 ~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
..+|+|+|.+ +++++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+.+.+..
T Consensus 13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~ 74 (159)
T 1yav_A 13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 74 (159)
T ss_dssp TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred HhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhh
Confidence 3459999998 89999999999999999999999999999988999999999999998643
No 46
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=98.39 E-value=1.5e-07 Score=85.25 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=60.4
Q ss_pred ccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH-HHhhcc--CCCCcCCCCccccc
Q 005685 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR-CLSKLS--SDNSKGDSIASDVC 657 (683)
Q Consensus 584 ~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~-~~~~~~--~~~~v~~~~~~~i~ 657 (683)
+++|+|.+++++++++++++|+.+.|.+++.+.+||+|++++++|+||.+|+.+ .+.+.. .+.++.++|.++..
T Consensus 9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~ 85 (133)
T 1y5h_A 9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY 85 (133)
T ss_dssp CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred CHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCE
Confidence 499999999999999999999999999999999999998899999999999984 544322 23455556655443
No 47
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=98.38 E-value=5.8e-07 Score=81.33 Aligned_cols=74 Identities=19% Similarity=0.135 Sum_probs=61.4
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+....++++..+... .++.+++++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+.+
T Consensus 54 Givt~~dl~~~~~~~---~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l 127 (130)
T 3i8n_A 54 GFVHRLELFKMQQSG---SGQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL 127 (130)
T ss_dssp EECCHHHHHHHHHTT---TTTSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred EEEEHHHHHHHHhcC---CCcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 555666666554422 2356699999 5688999999999999999999999999999889999999999999875
No 48
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=98.38 E-value=3.1e-07 Score=84.06 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHhhhcCCccccccccccc------CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHH
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSK------DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~------~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl 635 (683)
+.....++++.+....+...+.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++++++|+||++|+
T Consensus 56 Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~di 135 (144)
T 2nyc_A 56 NVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDI 135 (144)
T ss_dssp EEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHH
T ss_pred EEEcHHHHHHHhcccccccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHH
Confidence 555555555544422223345679999986 68899999999999999999999999999988999999999999
Q ss_pred HHHHhh
Q 005685 636 KRCLSK 641 (683)
Q Consensus 636 ~~~~~~ 641 (683)
.+.+.+
T Consensus 136 l~~l~~ 141 (144)
T 2nyc_A 136 LKYILL 141 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998643
No 49
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=98.38 E-value=6.2e-07 Score=85.57 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+....++++...... .+.+++++| ++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+.+..
T Consensus 90 Givt~~dl~~~~~~~----~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 90 GIISAKQLLSESIAG----ERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp EEEEHHHHHHHHHTT----CCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred EEEEHHHHHHHHhhc----CcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence 555666666554421 255699999 999999999999999999999999999999988999999999999998654
Q ss_pred cc
Q 005685 642 LS 643 (683)
Q Consensus 642 ~~ 643 (683)
+.
T Consensus 165 ~~ 166 (172)
T 3lhh_A 165 EF 166 (172)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 50
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=98.37 E-value=2.3e-07 Score=85.71 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=53.0
Q ss_pred cccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 582 PCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 582 ~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
..+|+|+|.+ +++++++++++.++.+.|.+++++.+||+|++++++|+||.+|+.+.
T Consensus 4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~ 62 (152)
T 4gqw_A 4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL 62 (152)
T ss_dssp CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence 3569999999 89999999999999999999999999999998999999999999864
No 51
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=98.36 E-value=2.1e-07 Score=87.38 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=61.1
Q ss_pred Cccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCC-eEEEEEeHHHHHHHHhhccCCCCcCCCCcc
Q 005685 580 IPPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGED-FLEGILTYGDIKRCLSKLSSDNSKGDSIAS 654 (683)
Q Consensus 580 ~~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~-~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~ 654 (683)
..+.+|+|+|++ ++++++++++++++++.|.+++++.+||+|+++ +++|+||.+|+.+.+.+. .+.++.++|.+
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-~~~~v~~im~~ 111 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-EQFHLKSILRP 111 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-GGCCHHHHCBC
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-CcccHHHHcCC
Confidence 445569999997 799999999999999999999999999999874 999999999999875433 33455566643
No 52
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=98.36 E-value=7.2e-07 Score=81.04 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=60.8
Q ss_pred ccccccc---cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH-Hhhc--cCCCCcCCCCccccc
Q 005685 584 QVSRAMS---KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC-LSKL--SSDNSKGDSIASDVC 657 (683)
Q Consensus 584 ~V~diM~---~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~-~~~~--~~~~~v~~~~~~~i~ 657 (683)
+|+|+|+ ++++++++++++.|+.+.|.+++.+.+||+| +++++|+||.+|+.+. ..+. ..+.++.++|.++..
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~ 85 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA 85 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCC
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCe
Confidence 4999999 8999999999999999999999999999999 7999999999999975 3321 234556667665544
Q ss_pred c
Q 005685 658 N 658 (683)
Q Consensus 658 ~ 658 (683)
+
T Consensus 86 ~ 86 (135)
T 2rc3_A 86 Y 86 (135)
T ss_dssp C
T ss_pred E
Confidence 3
No 53
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=98.34 E-value=4.4e-07 Score=85.14 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=55.5
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEec--CCeEEEEEeHHHHHHHHhh
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG--EDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~--~~~lvGiVt~~dl~~~~~~ 641 (683)
...+|+|+|+++++++++++++.|+.+.|.+++.+.+||+|+ +++++|+||.+|+.+.+..
T Consensus 11 ~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~ 73 (164)
T 2pfi_A 11 HHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA 73 (164)
T ss_dssp CSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred cCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence 345699999999999999999999999999999999999996 6899999999999988643
No 54
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=98.34 E-value=2.4e-07 Score=84.12 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=53.0
Q ss_pred ccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEec-CCeEEEEEeHHHHHHHHhh
Q 005685 583 CQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNG-EDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 583 ~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~-~~~lvGiVt~~dl~~~~~~ 641 (683)
.+|+|+|++ ++++++++++++|+.+.|.+++++.+||+|+ +++++|+||.+|+++...+
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~ 63 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE 63 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTS
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhc
Confidence 359999974 6899999999999999999999999999975 5899999999999998654
No 55
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=98.34 E-value=5.9e-07 Score=83.83 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=60.2
Q ss_pred cccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEE-ec-CCeEEEEEeHHHHHHHHhhccCCCCcCCCCccccc
Q 005685 584 QVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVV-NG-EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVC 657 (683)
Q Consensus 584 ~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVV-d~-~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~ 657 (683)
+|+|+|++ +++++++++++.++.+.|.+++++.+||+ |+ +++++|+||.+|+.+.+.... +.++.++| .++.
T Consensus 21 ~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-~~~v~~~m-~~~~ 96 (153)
T 3oco_A 21 VASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-KAKISTIM-RDIV 96 (153)
T ss_dssp BHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-TSBGGGTC-BCCE
T ss_pred EeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-CCcHHHHh-CCCe
Confidence 39999997 89999999999999999999999999999 64 389999999999999865443 45566776 4333
No 56
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=98.33 E-value=4e-07 Score=82.42 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+..+.++++...-.......+.+++++|.+++.++++++++.++.+.|.+++.+.+||+|+ |+++|+||++|+.+.+.
T Consensus 53 Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 53 GMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLP 130 (133)
T ss_dssp EEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC
T ss_pred EEEeHHHHHHHHHhcCCCccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence 4455555543221122233456799999999999999999999999999999999999997 89999999999998753
No 57
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=98.33 E-value=7.2e-07 Score=79.62 Aligned_cols=78 Identities=24% Similarity=0.253 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+.+++++.+. ......+.+++++|.+++.++++++++.++.+.|.+++.+.+||+|+ ++++|+||++|+.+.+.+
T Consensus 45 G~it~~dl~~~~~-~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 45 GIVTTWDVLEAIA-EGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA 122 (125)
T ss_dssp EEEEHHHHHHHHH-HTCCTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred EEEeHHHHHHHHh-cCCcccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 4455555554333 12233456799999999999999999999999999999999999998 999999999999998644
No 58
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=98.32 E-value=4.7e-07 Score=81.67 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=55.6
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+.+.+
T Consensus 68 ~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 68 EKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp CBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred CcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 56999999999999999999999999999999999999988999999999999998754
No 59
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=98.32 E-value=3.4e-07 Score=87.10 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=53.4
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
..+++++|+++++++++++++.++.+.|.+++.+.+||+| +|+++|+||++|+++++
T Consensus 104 ~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l 160 (170)
T 4esy_A 104 KLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL 160 (170)
T ss_dssp TCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred ccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence 3459999999999999999999999999999999999998 58999999999999885
No 60
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=98.32 E-value=7.3e-07 Score=80.69 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+.++++..+... ...+.+++++|.+++.++++++++.++.+.|.+++.+.+||+|++|+++|+||++|+.+.+.+
T Consensus 48 Givt~~dl~~~~~~~--~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 125 (133)
T 2ef7_A 48 GIITERDIVKAIGKG--KSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD 125 (133)
T ss_dssp EEEEHHHHHHHHHTT--CCTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred EEEcHHHHHHHHhcC--CCcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence 555555555443311 123467999999999999999999999999999999999999988999999999999999766
Q ss_pred ccC
Q 005685 642 LSS 644 (683)
Q Consensus 642 ~~~ 644 (683)
+..
T Consensus 126 ~~~ 128 (133)
T 2ef7_A 126 MFE 128 (133)
T ss_dssp HC-
T ss_pred HHH
Confidence 543
No 61
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=98.31 E-value=9.2e-07 Score=83.04 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=69.3
Q ss_pred hhhhhcccc--chhHHHHHHHHHHhhhcCCccccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCC---e
Q 005685 553 LSVVENAAD--SEAAEEMLLEELKLLQFSIPPCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGED---F 625 (683)
Q Consensus 553 L~~~~~~~~--~~~~~~~~L~~l~~~~~~~~~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~---~ 625 (683)
+++++.+.+ +..+.++++..+. ........+++++|.+ +++++++++++.++++.|.+++.+.+||+|+++ +
T Consensus 50 ~~Vvd~~~~~~Givt~~dl~~~~~-~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~ 128 (159)
T 3fv6_A 50 LFVVDRDAVLVGVLSRKDLLRASI-GQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFE 128 (159)
T ss_dssp EEEECTTSCEEEEEEHHHHHHHHT-SCSCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEE
T ss_pred EEEEcCCCcEEEEEeHHHHHHHhh-ccCcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCccee
Confidence 344443322 5556666655442 1123345679999998 999999999999999999999999999999887 9
Q ss_pred EEEEEeHHHHHHHHhhcc
Q 005685 626 LEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 626 lvGiVt~~dl~~~~~~~~ 643 (683)
++|+||++|+.+++.+..
T Consensus 129 ~vGiit~~dil~~l~~~~ 146 (159)
T 3fv6_A 129 VIGRVTKTNMTKILVSLS 146 (159)
T ss_dssp EEEEEEHHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHHHh
Confidence 999999999999965533
No 62
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=98.30 E-value=9.6e-07 Score=82.39 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=67.9
Q ss_pred hhhhhcccc--chhHHHHHHHHHHhhhc---CCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEE
Q 005685 553 LSVVENAAD--SEAAEEMLLEELKLLQF---SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLE 627 (683)
Q Consensus 553 L~~~~~~~~--~~~~~~~~L~~l~~~~~---~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lv 627 (683)
+++++.+.+ |..+.+++++.+..... .....+++++|.++++++++++++.++.+.|.+++ .+||+|++|+++
T Consensus 51 ~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~ 128 (156)
T 3ctu_A 51 VPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQ 128 (156)
T ss_dssp EEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEE
T ss_pred EeEECCCCEEEEEEcHHHHHHHHHhccccccccccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEE
Confidence 345543332 55555666555442211 12256699999999999999999999999998775 799999889999
Q ss_pred EEEeHHHHHHHHhhccCC
Q 005685 628 GILTYGDIKRCLSKLSSD 645 (683)
Q Consensus 628 GiVt~~dl~~~~~~~~~~ 645 (683)
|+||++|+.+++.+...+
T Consensus 129 Giit~~dil~~l~~~~~~ 146 (156)
T 3ctu_A 129 GIITRKSILKAVNALLHD 146 (156)
T ss_dssp EEEETTHHHHHHHHHSCC
T ss_pred EEEEHHHHHHHHHHHHHh
Confidence 999999999998766543
No 63
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.30 E-value=1.8e-06 Score=82.62 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=55.2
Q ss_pred Ccccccccccc--cCceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHhh
Q 005685 580 IPPCQVSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 580 ~~~~~V~diM~--~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~~ 641 (683)
....+|+|+|+ +++++++++++++++++.|.+++++.+||+|++ ++++|+||.+|+++...+
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~ 97 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLIT 97 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHH
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhc
Confidence 44556999997 468899999999999999999999999999986 899999999999998644
No 64
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.29 E-value=1.1e-06 Score=79.95 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+..++++..-... .....+++++|.+++.++++++++.++.+.|.+++.+.+ |+|++|+++|+||++|+.+.+.+
T Consensus 52 Givt~~dl~~~~~~~~-~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 52 GFFTKSDIIRRVIVPG-LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR 129 (138)
T ss_dssp EEEEHHHHHHHTTTTC-CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred EEEeHHHHHHHHHhcC-CcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence 5555555543322111 134567999999999999999999999999999999999 99988999999999999999765
Q ss_pred ccC
Q 005685 642 LSS 644 (683)
Q Consensus 642 ~~~ 644 (683)
+..
T Consensus 130 ~~~ 132 (138)
T 2yzi_A 130 RLE 132 (138)
T ss_dssp CSC
T ss_pred HHH
Confidence 543
No 65
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=98.28 E-value=8e-07 Score=81.98 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=56.3
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~ 642 (683)
...+++++|.++++++++++++.++++.|.+++.+.+||+|++++++|+||++|+++.+.+.
T Consensus 83 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 83 NGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp -CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-
T ss_pred ccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 34569999999999999999999999999999999999999889999999999999996543
No 66
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=98.28 E-value=1.1e-06 Score=82.04 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+.....+++..+... .+.+++++| ++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|+++.+..
T Consensus 69 Givt~~dl~~~~~~~----~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 69 GYAYNYDIVRQARID----DKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp EEEEHHHHHHHHHHH----TTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred EEEEHHHHHhHHhcC----CCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence 555555555544322 145699999 899999999999999999999999999999988999999999999999654
Q ss_pred cc
Q 005685 642 LS 643 (683)
Q Consensus 642 ~~ 643 (683)
+.
T Consensus 144 ~~ 145 (153)
T 3oco_A 144 NL 145 (153)
T ss_dssp --
T ss_pred cC
Confidence 43
No 67
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=98.27 E-value=2e-06 Score=87.79 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=65.9
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCC-CCcCCCCcccccc
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSD-NSKGDSIASDVCN 658 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~-~~v~~~~~~~i~~ 658 (683)
+.+++++|.++++++++++++.|+.+.|.+++++.+||+|++++++|++|.+|+.+.+.+.... .++.++|.+++.+
T Consensus 83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~ 160 (280)
T 3kh5_A 83 NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIV 160 (280)
T ss_dssp TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCC
T ss_pred hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeE
Confidence 3569999999999999999999999999999999999999999999999999999987655443 3667777655443
No 68
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.27 E-value=9.9e-07 Score=82.55 Aligned_cols=62 Identities=26% Similarity=0.175 Sum_probs=56.8
Q ss_pred CcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc
Q 005685 580 IPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642 (683)
Q Consensus 580 ~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~ 642 (683)
....+++++|.+ ++++++++++.++.+.|.+++.+.+||+|++++++|+||++|+.+.+.++
T Consensus 93 ~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 93 LIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp CSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred HcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence 345679999999 99999999999999999999999999999889999999999999987654
No 69
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=98.27 E-value=8e-07 Score=85.18 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=53.6
Q ss_pred cccccccccC----ceee--cCCCCHHHHHHHHHhCCCCEEEEE--ecCCeEEEEEeHHHHHHHHhh
Q 005685 583 CQVSRAMSKD----FVKV--ALTVTLKEAIESMKDGQQNCVLVV--NGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 583 ~~V~diM~~~----~~~v--~~~~tl~ea~~~l~~~~~~~lPVV--d~~~~lvGiVt~~dl~~~~~~ 641 (683)
.+|+|+|+++ ++++ ++++++.++.+.|.+++++.+||+ |++++++|+||.+|+.+.+..
T Consensus 11 ~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~ 77 (185)
T 2j9l_A 11 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN 77 (185)
T ss_dssp CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred CcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 4499999987 7888 999999999999999999999999 678999999999999998543
No 70
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=98.26 E-value=1.1e-06 Score=83.67 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=56.6
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
.+.+++++|.++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|+++.+.+
T Consensus 96 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 96 YGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp TTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred ccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence 4556999999999999999999999999999999999999988999999999999999644
No 71
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.26 E-value=1.4e-06 Score=87.91 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=55.5
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
.+|+|+|+++++++++++++.|+++.|.+++++.+||+|++++++|+||..|+.+.+.+
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~ 65 (245)
T 3l2b_A 7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65 (245)
T ss_dssp CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHC
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence 45999999999999999999999999999999999999988999999999999998644
No 72
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=98.25 E-value=7.4e-07 Score=85.91 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+.++++..+..........+++++|.++++++++++++.++++.|.+++.+.+||+|++++++|+||++|+.+.+.+
T Consensus 54 Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 54 GLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp EEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred EEEeHHHHHHHHhhcccCcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 55555566554432122334567999999999999999999999999999999999999988999999999999987544
No 73
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=98.25 E-value=6.7e-07 Score=85.23 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=51.9
Q ss_pred ccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 583 CQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 583 ~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
.+|+|+|++ +++++++++++.|+++.|.+++++.+||+|++++++|+||.+|+.+
T Consensus 4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~ 60 (180)
T 3sl7_A 4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLA 60 (180)
T ss_dssp CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTC
T ss_pred eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHh
Confidence 358999999 8999999999999999999999999999999899999999999985
No 74
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=98.25 E-value=9.1e-07 Score=80.84 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=53.2
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
.+.+++++|.+ ++++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+.+..
T Consensus 68 ~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 68 DSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp GGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--
T ss_pred CCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 34569999976 8899999999999999999999999999988999999999999988543
No 75
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=98.24 E-value=1.5e-06 Score=80.50 Aligned_cols=81 Identities=25% Similarity=0.330 Sum_probs=63.7
Q ss_pred chhHHHHHHHHHHhhh----cCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 562 SEAAEEMLLEELKLLQ----FSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~----~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+..+.+++++.+.... ......+++++|.++++++++++++.++++.|.+++. +||+|++|+++|+||++|+.+
T Consensus 62 Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~ 139 (150)
T 3lqn_A 62 GLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILK 139 (150)
T ss_dssp EEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHH
T ss_pred EEEEHHHHHHHHHhhcccchhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHH
Confidence 5555666655542110 1224567999999999999999999999999998876 999998899999999999999
Q ss_pred HHhhccC
Q 005685 638 CLSKLSS 644 (683)
Q Consensus 638 ~~~~~~~ 644 (683)
.+.++..
T Consensus 140 ~l~~~~~ 146 (150)
T 3lqn_A 140 LLNKKVR 146 (150)
T ss_dssp HHHHHC-
T ss_pred HHHHHhH
Confidence 9766554
No 76
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=98.23 E-value=1.3e-06 Score=79.45 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=62.5
Q ss_pred chhHHHHH-HHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCC-----CCEEEEEecCCeEEEEEeHHHH
Q 005685 562 SEAAEEML-LEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQ-----QNCVLVVNGEDFLEGILTYGDI 635 (683)
Q Consensus 562 ~~~~~~~~-L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~-----~~~lPVVd~~~~lvGiVt~~dl 635 (683)
+..+.+++ ++.+.. ....+.+++++|.+++.++++++++.++.+.|.+++ .+.+||+|++++++|+||++|+
T Consensus 53 Givt~~dl~~~~~~~--~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dl 130 (138)
T 2p9m_A 53 GIVTTTDIGYNLIRD--KYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDI 130 (138)
T ss_dssp EEEEHHHHHHHHTTT--CCCSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHH
T ss_pred EEEEHHHHHHHHHhh--cccCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHH
Confidence 55555555 443321 123456799999999999999999999999999999 9999999988999999999999
Q ss_pred HHHHhh
Q 005685 636 KRCLSK 641 (683)
Q Consensus 636 ~~~~~~ 641 (683)
.+.+.+
T Consensus 131 l~~~~~ 136 (138)
T 2p9m_A 131 IRTISK 136 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998654
No 77
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=98.23 E-value=2.3e-06 Score=77.35 Aligned_cols=59 Identities=10% Similarity=0.206 Sum_probs=52.4
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+.+++++|.+ +.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+.+-.
T Consensus 68 ~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 68 ALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp TSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred CcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 4569999964 7899999999999999999999999999988999999999999998543
No 78
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=98.22 E-value=1.5e-06 Score=78.34 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=52.8
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
.+.+++++|.+ +.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+.+
T Consensus 67 ~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (127)
T 3nqr_A 67 EAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 124 (127)
T ss_dssp CCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred CCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 45569999955 78999999999999999999999999999889999999999999874
No 79
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=98.22 E-value=2.5e-06 Score=79.30 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=56.7
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc---CCCCcCCCCc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS---SDNSKGDSIA 653 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~---~~~~v~~~~~ 653 (683)
|+|+ ++++++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+.+.+.+.. .+.++.++|.
T Consensus 25 v~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~~~~~~~v~~~m~ 94 (152)
T 2uv4_A 25 IGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQ 94 (152)
T ss_dssp CSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSCCCTTSBGGGGGG
T ss_pred CCcc--CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhhhhhcchHHHHHh
Confidence 8888 88999999999999999999999999999998899999999999999865432 2334555553
No 80
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=98.22 E-value=1.3e-06 Score=79.17 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+....+++++.+.. .......+++++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+.+.+-
T Consensus 50 Givt~~dl~~~~~~-~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~ 126 (130)
T 3hf7_A 50 SMLRVREAYRLMTE-KKEFTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 126 (130)
T ss_dssp EEEEHHHHHHHHTS-SSCCCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred EEEEHHHHHHHHhc-cCccchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence 45555555554431 1122345689999 77889999999999999999999999999998899999999999998854
No 81
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=98.21 E-value=1.3e-06 Score=79.78 Aligned_cols=58 Identities=10% Similarity=0.267 Sum_probs=53.4
Q ss_pred cccc---ccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 584 QVSR---AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 584 ~V~d---iM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
++++ +|.++++++++++++.++.+.|.+++.+.+||+|++++++|+|+.+|+.+.+.+
T Consensus 9 ~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 69 (144)
T 2nyc_A 9 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 69 (144)
T ss_dssp BGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred chhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence 3677 899999999999999999999999999999999988999999999999988654
No 82
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=98.20 E-value=3.2e-06 Score=83.33 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=62.5
Q ss_pred CCcccccccccccCceeecCCCCHHHHHHHHHhC---CCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCccc
Q 005685 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDG---QQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 655 (683)
Q Consensus 579 ~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~---~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~ 655 (683)
+.++.+|+++|+++++++++++|++++++.|.+. +.+.+||+|++++++|+||.+|+++. ..+.++.++|.++
T Consensus 50 ~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----~~~~~v~~im~~~ 125 (205)
T 3kxr_A 50 QYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH----EPHEPLISLLSED 125 (205)
T ss_dssp HSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS----CTTSBGGGGCCSS
T ss_pred CCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC----CCcchHHHHhcCC
Confidence 4566779999999999999999999999999886 78999999999999999999998753 2234566666554
Q ss_pred ccc
Q 005685 656 VCN 658 (683)
Q Consensus 656 i~~ 658 (683)
+.+
T Consensus 126 ~~~ 128 (205)
T 3kxr_A 126 SRA 128 (205)
T ss_dssp CCC
T ss_pred CeE
Confidence 443
No 83
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=98.20 E-value=1.6e-06 Score=97.90 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=64.9
Q ss_pred cccccccccccCceeecCC-CCHHHHHHHHHhCCCCEEEEEe-cCCeEEEEEeHHHHHHHHhhc--cCCCCcCCCCcccc
Q 005685 581 PPCQVSRAMSKDFVKVALT-VTLKEAIESMKDGQQNCVLVVN-GEDFLEGILTYGDIKRCLSKL--SSDNSKGDSIASDV 656 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~-~tl~ea~~~l~~~~~~~lPVVd-~~~~lvGiVt~~dl~~~~~~~--~~~~~v~~~~~~~i 656 (683)
.+.+|+|+|++++++++++ +++.|+++.|.+++++.+||+| ++++++|+||.+|+++.+... ..+.++.++|.+++
T Consensus 382 ~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~~~~ 461 (527)
T 3pc3_A 382 WSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNKRV 461 (527)
T ss_dssp TTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEETTC
T ss_pred cCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhcCCC
Confidence 3456999999999999999 9999999999999999999999 789999999999999886443 22456666666554
Q ss_pred cc
Q 005685 657 CN 658 (683)
Q Consensus 657 ~~ 658 (683)
.+
T Consensus 462 ~~ 463 (527)
T 3pc3_A 462 IR 463 (527)
T ss_dssp CE
T ss_pred eE
Confidence 43
No 84
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.16 E-value=1e-06 Score=81.62 Aligned_cols=82 Identities=16% Similarity=0.337 Sum_probs=64.0
Q ss_pred hhhhcccc--chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEe
Q 005685 554 SVVENAAD--SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILT 631 (683)
Q Consensus 554 ~~~~~~~~--~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt 631 (683)
++++.+.+ +..+.+++++.+.. .....+.+++++|.++++++++++++.++++.|.+++.+.+||+|++ +++|+||
T Consensus 65 ~Vvd~~~~~~Givt~~dl~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit 142 (149)
T 3k2v_A 65 AICDDDMNIIGIFTDGDLRRVFDT-GVDMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVH 142 (149)
T ss_dssp EEECTTCBEEEEEEHHHHHHHHCS-SSCCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEE
T ss_pred EEECCCCcEEEEecHHHHHHHHhc-CCCcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEE
Confidence 44443322 55555666554431 22335677999999999999999999999999999999999999976 9999999
Q ss_pred HHHHHH
Q 005685 632 YGDIKR 637 (683)
Q Consensus 632 ~~dl~~ 637 (683)
++|+.+
T Consensus 143 ~~dil~ 148 (149)
T 3k2v_A 143 MHDLLR 148 (149)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 999864
No 85
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=98.15 E-value=1.7e-06 Score=89.52 Aligned_cols=77 Identities=19% Similarity=0.059 Sum_probs=66.1
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCcccccc
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVCN 658 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~~ 658 (683)
+.+++++|+++++++++++++.++.+.|.+++++.+||+|++++++|++|.+|+.+.+.....+.++.++|..++.+
T Consensus 92 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~ 168 (296)
T 3ddj_A 92 TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQT 168 (296)
T ss_dssp TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCC
T ss_pred cccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeE
Confidence 45699999999999999999999999999999999999998899999999999998876555555666777654443
No 86
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.14 E-value=1e-06 Score=88.88 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=49.0
Q ss_pred cccccccc-cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 583 CQVSRAMS-KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 583 ~~V~diM~-~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
.+++|+|+ +++++++++++++|+.+.|.+++++.+||+|++++++|+||++|+++..+
T Consensus 185 ~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~~ 243 (245)
T 3l2b_A 185 LPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHK 243 (245)
T ss_dssp SBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-------
T ss_pred CceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchhh
Confidence 44999999 99999999999999999999999999999999899999999999998753
No 87
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=98.14 E-value=2.2e-06 Score=79.94 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=59.6
Q ss_pred ccccccc------cCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc---CCCCcCCCCcc
Q 005685 584 QVSRAMS------KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS---SDNSKGDSIAS 654 (683)
Q Consensus 584 ~V~diM~------~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~---~~~~v~~~~~~ 654 (683)
+|+|+|+ +++++++++++++|+++.|.+++++.+||+| +++++|+||.+|+.+.+..+. .+.++.++|.+
T Consensus 8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~ 86 (157)
T 4fry_A 8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA 86 (157)
T ss_dssp BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS
T ss_pred HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC
Confidence 4999999 5569999999999999999999999999965 789999999999999854322 24556666665
Q ss_pred cccc
Q 005685 655 DVCN 658 (683)
Q Consensus 655 ~i~~ 658 (683)
++.+
T Consensus 87 ~~~~ 90 (157)
T 4fry_A 87 KVRY 90 (157)
T ss_dssp SCCC
T ss_pred CCcE
Confidence 4443
No 88
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.14 E-value=3.6e-06 Score=83.33 Aligned_cols=62 Identities=19% Similarity=0.113 Sum_probs=56.6
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~ 643 (683)
+.+++++|+++++++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+.+.+....
T Consensus 71 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~ 132 (213)
T 1vr9_A 71 DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 132 (213)
T ss_dssp TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh
Confidence 34699999999999999999999999999999999999998899999999999999865433
No 89
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.13 E-value=2.8e-06 Score=77.78 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+....+++++.+... ...+.+++++|.+++++++++ ++.++++.|.+++.+.+||+|++++++|+||++|+.+..
T Consensus 52 Givt~~dl~~~~~~~--~~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 126 (141)
T 2rih_A 52 AVVSERDILRAVAQR--LDLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 126 (141)
T ss_dssp EEEEHHHHHHHHHTT--CCTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred EEEEHHHHHHHHhcC--CCCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence 555555555544311 123567999999999999999 999999999999999999999889999999999998763
No 90
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=98.12 E-value=4.3e-06 Score=80.02 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=57.6
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccC
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~ 644 (683)
...+++++|.++++++++++++.++.+.|.+++.+.+||+| +|+++|+||++|+.+.+.+...
T Consensus 106 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~~~ 168 (185)
T 2j9l_A 106 PTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMAN 168 (185)
T ss_dssp CCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC
T ss_pred cCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHhhc
Confidence 45679999999999999999999999999999999999999 7999999999999999765544
No 91
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=98.12 E-value=1.6e-06 Score=89.81 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=64.0
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc--------CCCCcCCCC
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS--------SDNSKGDSI 652 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~--------~~~~v~~~~ 652 (683)
...+++++|.++++++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+.+.+.+.. .+.++.++|
T Consensus 154 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m 233 (296)
T 3ddj_A 154 EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVM 233 (296)
T ss_dssp CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHS
T ss_pred ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHh
Confidence 345799999999999999999999999999999999999998899999999999999865321 234555566
Q ss_pred cccccc
Q 005685 653 ASDVCN 658 (683)
Q Consensus 653 ~~~i~~ 658 (683)
..++.+
T Consensus 234 ~~~~~~ 239 (296)
T 3ddj_A 234 VTNLVT 239 (296)
T ss_dssp BCCCCB
T ss_pred CCCCeE
Confidence 554443
No 92
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=98.11 E-value=2.2e-06 Score=87.74 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=56.2
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
...+++++|+++++++++++++.++.+.|.+++.+.+||+|++++++|+||++|+++++.+
T Consensus 219 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 219 PNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK 279 (282)
T ss_dssp CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred ccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence 4566999999999999999999999999999999999999988899999999999987643
No 93
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.10 E-value=3.5e-06 Score=79.13 Aligned_cols=60 Identities=28% Similarity=0.306 Sum_probs=55.3
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
...+++++|.++++++++++++.++.+.|.+++.+.+||+|+ ++++|+||+.|+.+.+.+
T Consensus 76 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 76 FETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred cccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 456799999999999999999999999999999999999998 999999999999998543
No 94
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=98.10 E-value=4.7e-06 Score=77.58 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=63.0
Q ss_pred chhHHHHHHHHHHhhh----cCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 562 SEAAEEMLLEELKLLQ----FSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~----~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+..+..+++..+.... ......+++++|.++++++++++++.++.+.|.+++. +||+|++++++|+||++|+.+
T Consensus 58 Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~ 135 (157)
T 2emq_A 58 GLISMTMMMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLK 135 (157)
T ss_dssp EEEEHHHHHHHSBCSSSBCGGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHH
T ss_pred EEeeHHHHHHHHhcccccchHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHH
Confidence 5555555554432100 1123567999999999999999999999999998876 999998899999999999999
Q ss_pred HHhhccC
Q 005685 638 CLSKLSS 644 (683)
Q Consensus 638 ~~~~~~~ 644 (683)
.+.....
T Consensus 136 ~~~~~~~ 142 (157)
T 2emq_A 136 QLNKQLH 142 (157)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 9765543
No 95
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.10 E-value=2.4e-06 Score=84.61 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=61.0
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCcccccc
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVCN 658 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~~ 658 (683)
..++.++|.+++++++++++++|+.+.|.+++.+.+||+|++++++|+||.+|+.+... +.++.+.|.+++.+
T Consensus 12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----~~~v~~im~~~~~~ 84 (213)
T 1vr9_A 12 HMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----DSSVFNKVSLPDFF 84 (213)
T ss_dssp -CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----TSBSGGGCBCTTCC
T ss_pred ccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----CCcHHHHccCCCEE
Confidence 44589999999999999999999999999999999999998899999999999986532 34566666654443
No 96
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.10 E-value=5.3e-06 Score=79.41 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+....++++..+... .+.+++ |.++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|+++.+..
T Consensus 84 Givt~~Dl~~~~~~~----~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 84 GIGRAKDLVADLITE----GRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp EEEEHHHHHHHHHHH----SSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred EEEEHHHHHHHHhcC----CcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence 555566665554321 234577 66888999999999999999999999999999988999999999999999755
Q ss_pred ccC
Q 005685 642 LSS 644 (683)
Q Consensus 642 ~~~ 644 (683)
+..
T Consensus 158 ~i~ 160 (173)
T 3ocm_A 158 EFP 160 (173)
T ss_dssp CCC
T ss_pred cCC
Confidence 443
No 97
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=98.07 E-value=2.7e-06 Score=89.20 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHhhhcCCccccccccccc------CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHH
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSK------DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~------~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl 635 (683)
+.....++++.+....+...+.+++++|++ +++++++++++.++.+.|.+++.+.+||+|++++++|+||++|+
T Consensus 235 Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Di 314 (323)
T 3t4n_C 235 NVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDI 314 (323)
T ss_dssp EEEETTHHHHHHHTTHHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHH
T ss_pred EEEeHHHHHHHHhhchhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHH
Confidence 444444455544422222234569999998 78999999999999999999999999999988999999999999
Q ss_pred HHHHhh
Q 005685 636 KRCLSK 641 (683)
Q Consensus 636 ~~~~~~ 641 (683)
++++..
T Consensus 315 l~~l~~ 320 (323)
T 3t4n_C 315 LKYILL 320 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998643
No 98
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=98.04 E-value=4.4e-06 Score=86.25 Aligned_cols=64 Identities=27% Similarity=0.299 Sum_probs=55.8
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccC
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~ 644 (683)
++.+++++|.++++++++++++.++.+.|.+++.+.+||||++|+++|+||.+|+.+.+.++..
T Consensus 197 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~~ 260 (278)
T 2yvy_A 197 PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEAT 260 (278)
T ss_dssp TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC-----
T ss_pred CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHhH
Confidence 3556999999999999999999999999999999999999988999999999999999765443
No 99
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=98.04 E-value=4.4e-06 Score=78.15 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHHhhh----cCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH
Q 005685 562 SEAAEEMLLEELKLLQ----FSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~----~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~ 637 (683)
+..+..+++..+.... ......+++++|.+++.++++++++.++.+.|.+++. +||+|++++++|+||++|+.+
T Consensus 61 Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~ 138 (159)
T 1yav_A 61 GLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLK 138 (159)
T ss_dssp EEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHH
T ss_pred EEeEHHHHHHHhhhhcccchhhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHH
Confidence 5555555555443211 0134567999999999999999999999999988866 999998899999999999999
Q ss_pred HHhhccC
Q 005685 638 CLSKLSS 644 (683)
Q Consensus 638 ~~~~~~~ 644 (683)
.+.++..
T Consensus 139 ~~~~~~~ 145 (159)
T 1yav_A 139 ELNKHIR 145 (159)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9765543
No 100
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=98.02 E-value=7.8e-06 Score=76.45 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHHhhhc---CCcccccccccccC------ceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeH
Q 005685 562 SEAAEEMLLEELKLLQF---SIPPCQVSRAMSKD------FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTY 632 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~---~~~~~~V~diM~~~------~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~ 632 (683)
+..+..++++.+..... .....+++++|.++ +.++++++++.++.+.|.+++.+.+||+| +++++|+||+
T Consensus 60 Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~ 138 (164)
T 2pfi_A 60 GIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSW 138 (164)
T ss_dssp EEEEHHHHHHHHHC-------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEH
T ss_pred EEEEHHHHHHHHHhhccccCCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEH
Confidence 55555555544431111 12345689999887 78999999999999999999999999999 7999999999
Q ss_pred HHHHHHHhhcc
Q 005685 633 GDIKRCLSKLS 643 (683)
Q Consensus 633 ~dl~~~~~~~~ 643 (683)
+|+.+.+.+..
T Consensus 139 ~dil~~~~~~~ 149 (164)
T 2pfi_A 139 VEMKKAISNLT 149 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999976544
No 101
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=98.02 E-value=5.3e-06 Score=84.63 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+..+.+++++.+... .....+++++|.+++.++++++++.++.+.|.+++.+.+||+ ++++++|+||.+|+.+.+.+
T Consensus 129 Givt~~dl~~~~~~~--~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~ 205 (280)
T 3kh5_A 129 SLITERDVIRALLDK--IDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGS 205 (280)
T ss_dssp EEEEHHHHHHHHGGG--SCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTS
T ss_pred EEEEHHHHHHHHhhc--CCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhh
Confidence 555555555554321 122346999999999999999999999999999999999999 57899999999999998643
No 102
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=98.01 E-value=4.7e-06 Score=86.49 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=58.7
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccC
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~ 644 (683)
++.+++++|.++++++++++++.++.+.|.+++.+.+||+|++|+++|+||.+|+.+.+.++..
T Consensus 199 ~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~~ 262 (286)
T 2oux_A 199 DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEAA 262 (286)
T ss_dssp TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHHH
T ss_pred CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHhH
Confidence 3556999999999999999999999999999999999999988999999999999999766554
No 103
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=97.97 E-value=8e-06 Score=85.98 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=65.2
Q ss_pred chhHHHHHHHHHHhhhcCCccccccccccc------CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHH
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSK------DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~------~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl 635 (683)
+.....++++.+....+...+.+++++|.+ ++.++++++++.++.+.|.+++.+.+||+|++|+++|+||++|+
T Consensus 230 Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~di 309 (334)
T 2qrd_G 230 NVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADI 309 (334)
T ss_dssp EEEETHHHHHHHTTSCGGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHH
T ss_pred EEEEHHHHHHHhhccccccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHH
Confidence 444555555554432222335669999995 89999999999999999999999999999988999999999999
Q ss_pred HHHHhhcc
Q 005685 636 KRCLSKLS 643 (683)
Q Consensus 636 ~~~~~~~~ 643 (683)
++.+..+.
T Consensus 310 l~~~~~~~ 317 (334)
T 2qrd_G 310 LNYIIYDK 317 (334)
T ss_dssp HHHHHSCC
T ss_pred HHHHHhcc
Confidence 99975544
No 104
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=97.97 E-value=5.1e-06 Score=77.76 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=50.5
Q ss_pred cccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHH
Q 005685 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 636 (683)
Q Consensus 581 ~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~ 636 (683)
.+.+++++|.+ +.++++++++.++++.|.+++.+.+||+|++|+++|+||++|++
T Consensus 101 ~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 101 EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 45569999965 88999999999999999999999999999989999999999985
No 105
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=97.95 E-value=5.5e-06 Score=85.99 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=61.8
Q ss_pred CCcccccccccccCceeecCCCCHHHHHHHHHhC-----CCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDG-----QQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 579 ~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~-----~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
+.++.+|+++|++++++++++++++++.+.|.++ +++.+||+|++++++|+||.+|+.+. ..+.++.++|.
T Consensus 133 ~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~----~~~~~v~~im~ 208 (286)
T 2oux_A 133 HYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN----DDDTLIADILN 208 (286)
T ss_dssp TSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS----CTTSBHHHHSB
T ss_pred cCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC----CCCCcHHHHcC
Confidence 5667789999999999999999999999999987 78889999988999999999999764 12334555555
Q ss_pred cccc
Q 005685 654 SDVC 657 (683)
Q Consensus 654 ~~i~ 657 (683)
+++.
T Consensus 209 ~~~~ 212 (286)
T 2oux_A 209 ERVI 212 (286)
T ss_dssp SCCC
T ss_pred CCCe
Confidence 4443
No 106
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=97.94 E-value=1.6e-05 Score=82.03 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=62.9
Q ss_pred CCcccccccccccCceeecCCCCHHHHHHHHHhC-----CCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDG-----QQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 579 ~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~-----~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
+.+..+++++|++++++++++++++++.+.|.++ +...+||+|++++++|+||.+|+... ..+.++.++|.
T Consensus 131 ~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----~~~~~v~~im~ 206 (278)
T 2yvy_A 131 RYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----DPRTRVAEIMN 206 (278)
T ss_dssp HSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS----CTTCBSTTTSB
T ss_pred CCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC----CCCCcHHHHhC
Confidence 4456779999999999999999999999999886 78999999988999999999999864 23445667776
Q ss_pred ccccc
Q 005685 654 SDVCN 658 (683)
Q Consensus 654 ~~i~~ 658 (683)
+++.+
T Consensus 207 ~~~~~ 211 (278)
T 2yvy_A 207 PKVVY 211 (278)
T ss_dssp SSCCC
T ss_pred CCCeE
Confidence 55443
No 107
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=97.93 E-value=8.8e-06 Score=85.22 Aligned_cols=74 Identities=11% Similarity=0.199 Sum_probs=62.2
Q ss_pred cccccccc---cccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc---CCCCcCCCCcc
Q 005685 581 PPCQVSRA---MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS---SDNSKGDSIAS 654 (683)
Q Consensus 581 ~~~~V~di---M~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~---~~~~v~~~~~~ 654 (683)
.+.+++++ |.++++++++++++.++.+.|.+++++.+||+|++++++|+||++|+.+.+.... .+.++.++|..
T Consensus 185 ~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~ 264 (323)
T 3t4n_C 185 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 264 (323)
T ss_dssp CCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGG
T ss_pred hhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHhh
Confidence 34568999 9999999999999999999999999999999999899999999999999865433 23445555554
No 108
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=97.91 E-value=1.7e-05 Score=81.17 Aligned_cols=74 Identities=28% Similarity=0.224 Sum_probs=58.4
Q ss_pred cccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHH-HHhhc--cCCCCcCCCCcccc
Q 005685 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR-CLSKL--SSDNSKGDSIASDV 656 (683)
Q Consensus 583 ~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~-~~~~~--~~~~~v~~~~~~~i 656 (683)
.+++++|.+++.++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+.+ .+.+. ..+.++.++|..+.
T Consensus 60 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~~~ 136 (282)
T 2yzq_A 60 EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYV 136 (282)
T ss_dssp ----CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBSCC
T ss_pred CCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCCCC
Confidence 3499999999999999999999999999999999999998889999999999998 65432 22345566665443
No 109
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=97.79 E-value=3.8e-05 Score=85.34 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=63.5
Q ss_pred CCcccccccccccCceeecCCCCHHHHHHHHHhC-----CCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDG-----QQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 579 ~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~-----~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
+.++.+++++|++++++++++++++|+.+.|+++ +...+||+|++++++|+||.+|+.+. ..+.++.++|.
T Consensus 151 ~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~----~~~~~v~dim~ 226 (473)
T 2zy9_A 151 RYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----DPRTRVAEIMN 226 (473)
T ss_dssp TSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS----CTTSBGGGTSB
T ss_pred cCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC----CCCCcHHHHhC
Confidence 5567789999999999999999999999999875 46899999988999999999999864 23456677776
Q ss_pred cccccc
Q 005685 654 SDVCNC 659 (683)
Q Consensus 654 ~~i~~~ 659 (683)
+++.+.
T Consensus 227 ~~~~~v 232 (473)
T 2zy9_A 227 PKVVYV 232 (473)
T ss_dssp SSCCCE
T ss_pred CCCeEE
Confidence 555443
No 110
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=97.72 E-value=1.5e-05 Score=83.73 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=55.0
Q ss_pred cccccccc------ccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhcc
Q 005685 582 PCQVSRAM------SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 582 ~~~V~diM------~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~ 643 (683)
+.+++++| .++++++++++++.++.+.|.+++.+.+||+|++|+++|+||++|+++++.++.
T Consensus 258 ~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~~ 325 (330)
T 2v8q_E 258 DVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG 325 (330)
T ss_dssp SSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSSC
T ss_pred cCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhhc
Confidence 34577777 589999999999999999999999999999998899999999999999875543
No 111
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=97.69 E-value=4.3e-05 Score=77.67 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=50.6
Q ss_pred cccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 587 RAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 587 diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
.+|++.+.++.+++++.++.++|.+.+.+.+||++ +|+++||||++|+++++..
T Consensus 193 ~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 193 CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp SCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred ccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence 47999999999999999999999999999999998 5999999999999999753
No 112
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=97.67 E-value=5.7e-05 Score=79.31 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=52.7
Q ss_pred ccccc--ccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC-CeEEEEEeHHHHHHHHh
Q 005685 585 VSRAM--SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE-DFLEGILTYGDIKRCLS 640 (683)
Q Consensus 585 V~diM--~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~-~~lvGiVt~~dl~~~~~ 640 (683)
|+|+| +++++++++++++.++++.|.+++++.+||+|++ ++++|+||.+|+.+.+.
T Consensus 37 v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~ 95 (330)
T 2v8q_E 37 CYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH 95 (330)
T ss_dssp GGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHH
T ss_pred HhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHH
Confidence 99999 8899999999999999999999999999999987 79999999999998753
No 113
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=97.66 E-value=5.7e-05 Score=84.29 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=54.5
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
++++|.+++++++++++++|+.+.|.+++++.+||+|++++++|+||.+|++. ....+.++.++|.
T Consensus 91 ~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~---~~~~~~~v~diM~ 156 (496)
T 4fxs_A 91 FEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRF---VTDLTKSVAAVMT 156 (496)
T ss_dssp CCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTT---CCCTTSBGGGTSE
T ss_pred cccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhh---cccCCCcHHHHhc
Confidence 78899999999999999999999999999999999998899999999999962 1223345566665
No 114
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=97.64 E-value=5.1e-05 Score=85.53 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=67.2
Q ss_pred hhhhh-cccc--chhHHHHHHHHHHhhhcCCcccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC----Ce
Q 005685 553 LSVVE-NAAD--SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE----DF 625 (683)
Q Consensus 553 L~~~~-~~~~--~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~----~~ 625 (683)
+++++ .+.+ +....+++++.+... ....+.+|+++|+++++++++++++.++.++|.+++ ..||||++ ++
T Consensus 419 lpVvd~~~g~lvGiVt~~Dll~~l~~~-~~~~~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~ 495 (527)
T 3pc3_A 419 LPVVDQDDGSVLGVVGQETLITQIVSM-NRQQSDPAIKALNKRVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVE 495 (527)
T ss_dssp EEEECTTTCCEEEEEEHHHHHHHHHHH-CCCTTSBGGGGEETTCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEE
T ss_pred EEEEECCCCEEEEEEEHHHHHHHHHhc-cCcCCCcHHHHhcCCCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCe
Confidence 45555 2222 666667776665422 233456799999999999999999999999996655 57999984 89
Q ss_pred EEEEEeHHHHHHHHhhcc
Q 005685 626 LEGILTYGDIKRCLSKLS 643 (683)
Q Consensus 626 lvGiVt~~dl~~~~~~~~ 643 (683)
++||||++|+++++.++.
T Consensus 496 lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 496 LKALATKLDVTTFIAAGK 513 (527)
T ss_dssp EEEEEEHHHHHHHHHTCC
T ss_pred EEEEEEHHHHHHHHHhcc
Confidence 999999999999976654
No 115
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=97.61 E-value=0.0001 Score=82.38 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=56.7
Q ss_pred ccccccccccc-CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 581 PPCQVSRAMSK-DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 581 ~~~~V~diM~~-~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
.+.+++++|++ ++++++++++++++.+.|.+++.+.+||||++++++|+||++|+.+.+.+
T Consensus 150 ~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 150 YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 45679999998 89999999999999999999999999999999999999999999998653
No 116
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=97.58 E-value=8.2e-05 Score=83.33 Aligned_cols=61 Identities=21% Similarity=0.363 Sum_probs=56.6
Q ss_pred ccccccccccc-CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 581 PPCQVSRAMSK-DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 581 ~~~~V~diM~~-~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
.+.+++|+|++ ++++++++++++|+.+.|.+++.+.+||||++++++|+||++|+++....
T Consensus 173 ~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 173 YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence 45669999998 99999999999999999999999999999999999999999999998654
No 117
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=97.58 E-value=6.2e-05 Score=79.10 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=54.7
Q ss_pred cccccc---ccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 582 PCQVSR---AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 582 ~~~V~d---iM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
..++++ +|.+++.++++++++.++.+.|.+++.+.+||+|++++++|+||.+|+.+.+.+
T Consensus 181 ~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~ 243 (334)
T 2qrd_G 181 RVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 243 (334)
T ss_dssp CCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTT
T ss_pred hCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhc
Confidence 355888 599999999999999999999999999999999988999999999999998654
No 118
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=97.51 E-value=0.00023 Score=79.35 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=57.9
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEe--cCCeEEEEEeHHHHHHHHhhccCCCCcCCCCcc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVN--GEDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 654 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd--~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~ 654 (683)
++|+|.+++++++++++++|+.+.|.+++++.+||+| ++++++|+||.+|+++.. ..+.++.++|.+
T Consensus 92 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~---~~~~~v~~im~~ 160 (491)
T 1zfj_A 92 SENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS---DYNAPISEHMTS 160 (491)
T ss_dssp HTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS---CSSSBTTTSCCC
T ss_pred HHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc---cCCCcHHHHcCC
Confidence 6889999999999999999999999999999999999 789999999999998642 234456666664
No 119
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=97.50 E-value=2.5e-05 Score=87.45 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=2.6
Q ss_pred cccc-cccCceeecCCCCHHHHHHHHHhCCCCEEEEEecC---CeEEEEEeHHHHHHHHhhccCCCCcCCCCccc
Q 005685 585 VSRA-MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE---DFLEGILTYGDIKRCLSKLSSDNSKGDSIASD 655 (683)
Q Consensus 585 V~di-M~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~---~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~ 655 (683)
..++ |.++++++++++|++|+++.|.+++++.+||+|++ ++++|+||.+|+++. ....+.++.++|.++
T Consensus 98 ~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~~~~~~~V~diM~~~ 170 (503)
T 1me8_A 98 NFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--LTQTETKVSDMMTPF 170 (503)
T ss_dssp TTTC-----------------------------------------------------------------------
T ss_pred hcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--hccccCcHHHHhCCC
Confidence 5666 99999999999999999999999999999999987 899999999999864 222344566666654
No 120
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=97.50 E-value=0.00011 Score=82.19 Aligned_cols=67 Identities=21% Similarity=0.131 Sum_probs=56.7
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEec--CCeEEEEEeHHHHHHHHhhccCCCCcCCCCcc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG--EDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 654 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~--~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~ 654 (683)
.++.|.++++++++++|++|+.+.|.+++++.+||+|+ +++++|+||.+|++. ....+.++.++|.+
T Consensus 115 ~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~---~~~~~~~V~~vM~~ 183 (511)
T 3usb_A 115 SESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF---IQDYSIKISDVMTK 183 (511)
T ss_dssp SSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT---CCCSSSBHHHHCCC
T ss_pred cccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh---hccCCCcHHHhccc
Confidence 67889999999999999999999999999999999998 899999999999964 22234455666664
No 121
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=97.39 E-value=4.2e-05 Score=85.54 Aligned_cols=67 Identities=25% Similarity=0.274 Sum_probs=0.7
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCcc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 654 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~ 654 (683)
++|+|.+++++++++++++|+++.|.+++++.+||+|++++++|+||.+|+++. ...+.++.++|.+
T Consensus 97 ~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~---~~~~~~v~~im~~ 163 (494)
T 1vrd_A 97 TENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE---KNLSKKIKDLMTP 163 (494)
T ss_dssp C---------------------------------------------------------------------
T ss_pred HhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh---cCCCCcHHHHhCC
Confidence 788999999999999999999999999999999999988999999999999863 1223455666654
No 122
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=97.33 E-value=3.1e-05 Score=85.33 Aligned_cols=57 Identities=14% Similarity=0.290 Sum_probs=0.0
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHH
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~ 638 (683)
+.+|+|+|++++++++.+.+++|+.++|.+++...+||||++++|+|+||++|+.+.
T Consensus 199 ~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 199 ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN 255 (556)
T ss_dssp ---------------------------------------------------------
T ss_pred ceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence 456999999999999999999999999999999999999999999999999999987
No 123
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=97.27 E-value=5.2e-05 Score=84.90 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred ccccccccccC--ceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhh
Q 005685 582 PCQVSRAMSKD--FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641 (683)
Q Consensus 582 ~~~V~diM~~~--~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~ 641 (683)
+.+++|+|+++ +++++++++++|+++.|.+++.+.+||+|++++++|+||++|+.+.+..
T Consensus 160 ~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~ 221 (503)
T 1me8_A 160 ETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVC 221 (503)
T ss_dssp --------------------------------------------------------------
T ss_pred cCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhc
Confidence 34599999987 9999999999999999999999999999999999999999999998643
No 124
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=97.17 E-value=0.00011 Score=80.88 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=1.4
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEec---CCeEEEEEeHHHHHHHHhhccCCCCcCCCCccccccc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVCNC 659 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~---~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~~i~~~ 659 (683)
-+..|..+|++++|++|+.|+.++|.++++..+||+|+ +++|+||||.+|++- +..+.++.++|++++.+.
T Consensus 140 ~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf----~d~~~~V~evMT~~lvt~ 213 (556)
T 4af0_A 140 YENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF----QDAETPIKSVMTTEVVTG 213 (556)
T ss_dssp CCC---------------------------------------------------------------------------
T ss_pred cccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc----cccceEhhhhcccceEEe
Confidence 34568889999999999999999999999999999986 579999999999853 223456777777665543
No 125
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=97.11 E-value=0.0001 Score=82.18 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=0.4
Q ss_pred ccccccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHh
Q 005685 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640 (683)
Q Consensus 582 ~~~V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~ 640 (683)
+.+++++|++++++++++++++|+.+.|.+++.+.+||+|++++++|+||++|+.+..+
T Consensus 149 ~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 149 GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp ----------------------------------------------------------C
T ss_pred CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 44599999999999999999999999999999999999999899999999999999854
No 126
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=97.08 E-value=0.00014 Score=81.00 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=2.6
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIA 653 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~ 653 (683)
++++|.+++++++++++++|+++.|.+++++.+||+| +++++|+||.+|++.. ...+.++.++|.
T Consensus 90 ~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~---~~~~~~V~~vMt 154 (490)
T 4avf_A 90 HETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVK---PNAGDTVAAIMT 154 (490)
T ss_dssp CCC------------------------------------------------------------------
T ss_pred cccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhc---cccCCcHHHHhc
Confidence 7899999999999999999999999999999999999 7899999999999643 122345666666
No 127
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=97.04 E-value=9.4e-05 Score=82.66 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=5.7
Q ss_pred cccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhc
Q 005685 582 PCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642 (683)
Q Consensus 582 ~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~ 642 (683)
+.+++|+|++ ++++++++++++|+.+.|.+++.+.+||||++++++|+||++|+++.+...
T Consensus 154 ~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 154 SKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp -------------------------------------------------------CHHHHTCT
T ss_pred CCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence 3459999998 999999999999999999999999999999999999999999999986543
No 128
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=97.01 E-value=0.0001 Score=82.18 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=0.0
Q ss_pred ccccccccc-c-CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 582 PCQVSRAMS-K-DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 582 ~~~V~diM~-~-~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+.+++|+|+ + ++++++++++++|+.++|.+++.+.+||||++++++|+||++|+++..
T Consensus 146 ~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~ 205 (490)
T 4avf_A 146 GDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK 205 (490)
T ss_dssp ------------------------------------------------------------
T ss_pred CCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence 455999999 5 699999999999999999999999999999999999999999999984
No 129
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=97.00 E-value=7.4e-05 Score=83.94 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=29.3
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEec---CCeEEEEEeHHHHHHHHhhccCCCCcCCCCcc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG---EDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 654 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~---~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~ 654 (683)
++++|.+++++++++++++|+.+.|.+++++.+||+|+ +++++|+||.+|+.+... ...+.++.++|.+
T Consensus 110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~-~~~~~~v~~vm~~ 181 (514)
T 1jcn_A 110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE-KDHTTLLSEVMTP 181 (514)
T ss_dssp CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-----------------C
T ss_pred hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh-ccCCCCHHHHhCC
Confidence 88999999999999999999999999999999999997 589999999999976421 1233456666665
No 130
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.84 E-value=0.00016 Score=80.69 Aligned_cols=59 Identities=29% Similarity=0.306 Sum_probs=42.9
Q ss_pred cccccccccc-c-CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 581 PPCQVSRAMS-K-DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 581 ~~~~V~diM~-~-~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
.+.+++|+|+ + ++++++++++++|+.+.|.+++.+.+||||++++++|+||++|+++..
T Consensus 147 ~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 147 LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence 4566999999 5 589999999999999999999999999999999999999999999984
No 131
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=96.58 E-value=0.00061 Score=75.91 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=1.3
Q ss_pred cccccccCceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHHhhccCCCCcCCCCcc
Q 005685 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIAS 654 (683)
Q Consensus 585 V~diM~~~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~~~~~~~~~v~~~~~~ 654 (683)
.+|.|.+++.+++++++++|+.+.|.+++++.+||+|+ ++++|+|+.+|++. + .+.++.+.|.+
T Consensus 95 ~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~--~---~~~~v~~im~~ 158 (486)
T 2cu0_A 95 AERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA--R---EGKLVKELMTK 158 (486)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred hhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc--C---CCCCHHHHccC
Confidence 57789999999999999999999999999999999998 89999999999975 1 23345555553
No 132
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=96.36 E-value=0.00016 Score=81.21 Aligned_cols=58 Identities=29% Similarity=0.343 Sum_probs=42.8
Q ss_pred cccccccccc--CceeecCCCCHHHHHHHHHhCCCCEEEEEecCCeEEEEEeHHHHHHHH
Q 005685 582 PCQVSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639 (683)
Q Consensus 582 ~~~V~diM~~--~~~~v~~~~tl~ea~~~l~~~~~~~lPVVd~~~~lvGiVt~~dl~~~~ 639 (683)
+.+++++|++ ++++++++++++|+.+.|.+++.+.+||||++++++|+||++|+++.+
T Consensus 172 ~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 172 TTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp ---------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred CCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 3459999998 999999999999999999999999999999999999999999998774
No 133
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=55.73 E-value=2.2 Score=33.60 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHhhhcCCcccccccccccCceee
Q 005685 562 SEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKV 596 (683)
Q Consensus 562 ~~~~~~~~L~~l~~~~~~~~~~~V~diM~~~~~~v 596 (683)
+..++.++++.+-....+..+.+|+|+|+++++++
T Consensus 36 GIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV 70 (70)
T 3ghd_A 36 GVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI 70 (70)
T ss_dssp EEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred EEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence 67777777776654445556678999999998764
No 134
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=22.46 E-value=85 Score=26.68 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccccCccccchHHHHHHHHHHHHHH
Q 005685 278 IILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVV 325 (683)
Q Consensus 278 ~~~asv~a~~v~~~l~g~~~~f~~~~~~~~~~~~l~~~illGil~Gl~ 325 (683)
.+++++.+.+..+.++- .|.|++.-++..++..+..+++.|++.+-+
T Consensus 53 a~~aa~ls~l~~nffF~-~P~~sf~i~~~~~~vt~~v~l~val~~s~L 99 (107)
T 2ksf_A 53 SVVATVINVVSFDLFFI-APRGTLAVSDVQYLLTFAVMLTVGLVIGNL 99 (107)
T ss_dssp CSHHHHHHHHHHHHTTS-CSSCTTCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-CCCccccccCHhHHHHHHHHHHHHHHHHHH
Confidence 45778888888887663 466666555554455556666666665443
Done!