RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 005685
(683 letters)
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 281 bits (721), Expect = 8e-88
Identities = 103/460 (22%), Positives = 173/460 (37%), Gaps = 41/460 (8%)
Query: 58 PPLSHSRSSSFDHHNYVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHE 117
P L +++ L E A+L + ++G GL F+KGV +
Sbjct: 6 PSLETPQAARLRRR---QLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQN 62
Query: 118 WAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HGLLEILNQI 167
+ + L L + + G+ EI +
Sbjct: 63 QRMGALVHTADNYPLL------LTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGAL 116
Query: 168 KQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFS-LMMEN 226
+ + V K TLG G LG EGP+V IG + +
Sbjct: 117 EDQRPVRWWRVLPV-------KFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLK 169
Query: 227 NRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISS 286
E + L+A GAA+G+A+ FNA +AG F IE + R + + + ++S+
Sbjct: 170 GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRY---TLISIKAVFIGVIMST 226
Query: 287 TVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEK 346
+ + + V L LYLILG++ G+ +F + V +
Sbjct: 227 IMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGG 286
Query: 347 FGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKV 406
V+ G G++ P GF + + +L + A+V
Sbjct: 287 NITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATA-----GNFSMGMLVFIFVARV 341
Query: 407 VATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMA 466
+ T LC SG GG++AP L +G +G FG A E+ E +A+ GM
Sbjct: 342 ITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL------FPQYHLEAGTFAIAGMG 395
Query: 467 ATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWV 506
A LA+ PLT ++L+ E+T +Y+++LP++ A +
Sbjct: 396 ALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLL 435
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 278 bits (713), Expect = 1e-86
Identities = 97/436 (22%), Positives = 177/436 (40%), Gaps = 32/436 (7%)
Query: 77 RDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRL 136
R+ + L+ ++GL +G+ A F V+ + +W + L
Sbjct: 18 RNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWR---------SQLAQILA 68
Query: 137 ADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLD------RQGFDLVAGVFPTIKA 190
L+ + G +V + L++ S + LV IK
Sbjct: 69 PIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKLPLVWQRVLPIKL 128
Query: 191 IQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAA 250
+ ++LG G G EGP++ +G S + +E + L+A GA +G+A+ FNA
Sbjct: 129 VGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKATQENQRILIAVGAGAGLATAFNAP 188
Query: 251 VAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAA 310
+AG E + R++ + ++ V+++ + ++ G + ++ +
Sbjct: 189 LAGVALIGEEMHPRFRSQTLAYHS---LLFGCVMATIILRMIRGQSAIISLTEFKRVPLD 245
Query: 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYP 370
L +++ILG+L GV+ F R + FD + L L G GI++L
Sbjct: 246 SLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP---PLATKWKGFLLGSIIGILSLFPL 302
Query: 371 GILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGA 430
+ G V + S L + + + T +C GSG +GG++AP L I +
Sbjct: 303 PLTDGGDNAVLWAFN-----SQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIAS 357
Query: 431 AVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDY 490
V + + EP A+ GM A +A+ PLT++LL E+T +Y
Sbjct: 358 IVSVAMARHFHLL------FPSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNY 411
Query: 491 RILLPLMGAVGLAIWV 506
++LPL+ +A V
Sbjct: 412 FVILPLLVTCLVASVV 427
Score = 37.8 bits (88), Expect = 0.010
Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 57/225 (25%)
Query: 329 FTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGK 388
R + ++ +V + GL G++ + + ++
Sbjct: 9 NRRWLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILA 68
Query: 389 TASAPGIWLLTQLAAA------------------------------------------KV 406
+ ++ K+
Sbjct: 69 PIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKLPLVWQRVLPIKL 128
Query: 407 VATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMA 466
V L G+G++ G P++ +G ++G + GG + VG
Sbjct: 129 VGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWF----------KATQENQRILIAVGAG 178
Query: 467 ATLASVCSVPLTSVLLLFE-LTRDYR----ILLPLMGAVGLAIWV 506
A LA+ + PL V L+ E + +R L+ +A +
Sbjct: 179 AGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATII 223
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 228 bits (583), Expect = 5e-66
Identities = 97/439 (22%), Positives = 169/439 (38%), Gaps = 49/439 (11%)
Query: 90 LLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVT 149
L+ LLG+ + L + + VH + E + + ++ V
Sbjct: 10 LVCFLTLLGVTAALFIFAVDLAVHGLEEL-RMKISRLAGRFAG-------YILYVVSGVA 61
Query: 150 GGVIVGMM----------HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGT 199
++ GL ++ + + R +L KA+ +G
Sbjct: 62 LCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLF---AKALGLICAIGG 118
Query: 200 GCSLGPEGPSVDIGKSCANGFSLMME-----NNRERKIALVAAGAASGIASGFNAAVAGC 254
G +G EGP+V I A+ F + +R ++ +AA A G+AS F A + G
Sbjct: 119 GLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGV 178
Query: 255 FFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQS--AFTVPSYDLK--SAA 310
++IET+ +L+++ + V +L T AF ++D S
Sbjct: 179 LYSIETIAS-----FYLVQAFWKGVLSALSGAIVYELLYTTPLVEAFEGTNFDASDVSRT 233
Query: 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYP 370
+ LY ILG L GV+ +F R V + + G + L A +
Sbjct: 234 QTLLYAILGALMGVLGALFIRCVRSIYELRM--RHYPGTNRYFLVGVVALFASALQY-PF 290
Query: 371 GILYWGFTNVEEILHTGKTASAPGIWLLTQLAAA---KVVATALCKGSGLVGGLYAPSLM 427
+ L + T+L K + AL G L G++ PS +
Sbjct: 291 RLFALDPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFL 350
Query: 428 IGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELT 487
IGA G ++G E++ + P +YA+VG AA A V + L+ +++FE+T
Sbjct: 351 IGAGFGRLYG----ELMRVVFGNAI---VPGSYAVVGAAAFTAGV-TRALSCAVIIFEVT 402
Query: 488 RDYRILLPLMGAVGLAIWV 506
R L+P++ +V LA+ V
Sbjct: 403 GQIRHLVPVLISVLLAVIV 421
Score = 28.2 bits (63), Expect = 10.0
Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 28/167 (16%)
Query: 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIP 147
++G L+G+ A F + V I+E +R + + + ++
Sbjct: 236 LLYAILGALMGVLG----ALFIRCVRSIYEL-----------RMRHYPGTNRYFLVGVVA 280
Query: 148 VTGGVIV-------GMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTG 200
+ + + L + D G+ + + IK I A+++G
Sbjct: 281 LFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMP-IIKFILVALSIGLP 339
Query: 201 CSLGPEGPSVDIGKSCANGFSLMMENNRERKI-----ALVAAGAASG 242
G PS IG + +M I A+V A A +
Sbjct: 340 LPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTA 386
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 52.5 bits (126), Expect = 2e-07
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
+ M K+ ++ L A + + +G ++V N + +EG+LT D+ +
Sbjct: 21 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEK--IEGLLTTRDLLSTVESYC 78
Query: 644 SDNS 647
D+
Sbjct: 79 KDSC 82
Score = 51.3 bits (123), Expect = 3e-07
Identities = 15/73 (20%), Positives = 25/73 (34%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
+ M+ + V V T AI M + VV+ D GI+T + L
Sbjct: 94 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD 153
Query: 644 SDNSKGDSIASDV 656
+++ V
Sbjct: 154 EIFPVKVFMSTKV 166
Score = 50.5 bits (121), Expect = 6e-07
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 573 LKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTY 632
L L + V MS + V L +A++ M + V++ ++ + GI+T
Sbjct: 146 LLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTV 205
Query: 633 GDIKRCLSK 641
+ + L+K
Sbjct: 206 VNAIKQLAK 214
Score = 46.3 bits (110), Expect = 2e-05
Identities = 12/68 (17%), Positives = 28/68 (41%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644
V M + V + ++ A M + +L++N ++ + GI+T D+ L +
Sbjct: 229 VKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV 288
Query: 645 DNSKGDSI 652
+ +
Sbjct: 289 MEKFKEKL 296
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 49.4 bits (118), Expect = 3e-07
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
+V M+++ ++ L +L +A+ + + V V N + + GI T ++ + L+K
Sbjct: 84 KVEEVMNRNIPRLRLDDSLMKAVGLIVN--HPFVCVENDDGYFAGIFTRREVLKQLNKQL 141
Query: 644 SDNSKGDSI 652
+ G +
Sbjct: 142 HRPNGGRKL 150
Score = 37.8 bits (88), Expect = 0.003
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK 648
+ V L A+ + + + V++ L G+++ + + L +
Sbjct: 19 PADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFE 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 4e-07
Identities = 51/379 (13%), Positives = 115/379 (30%), Gaps = 61/379 (16%)
Query: 43 QLDRRFSDRRITFKD--PPLSHSRSSSFDHHNYVDA-RDSLT---------ESAPPEWAL 90
+D + + +KD + +FD + D + L+ L
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 91 LLIGCLLGLASGLCVAFFNKGVHIIHEW---AWAGTPNEGAAWLRL-----QRLADTWHR 142
L LL + F + + I +++ + + R+ RL +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 143 ILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCS 202
V+ + L + L +++ + ++ G V G T A+ ++ C
Sbjct: 126 FAKYNVS---RLQPYLKLRQALLELRPAKNVLIDG---VLGSGKTWVALDVCLSYKVQCK 179
Query: 203 LGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVL 262
+ + +++ + L M +I + ++ +I+ L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-----SIQAEL 234
Query: 263 RPLRAENSPPFTTAMIILASVISSTV-------STVLLGTQSAFTVPSYDLKSAAELPLY 315
R L P+ +++L +V ++ +LL T+ + + L
Sbjct: 235 RRLLKS--KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL- 291
Query: 316 LILGMLCGVVSVVFTR--LVAWFTKSFDFIKEKFGLPPVVC---P-ALGGLGAGIIALR- 368
S+ T + + K D + LP V P L + ++R
Sbjct: 292 -------DHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLSIIAE---SIRD 339
Query: 369 YPGIL-YWGFTNVEEILHT 386
W N +++
Sbjct: 340 GLATWDNWKHVNCDKLTTI 358
Score = 40.2 bits (93), Expect = 0.002
Identities = 58/384 (15%), Positives = 101/384 (26%), Gaps = 140/384 (36%)
Query: 336 FTKSFDF---------------IKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNV 380
F +FD I V L L + F V
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW---TLLSKQEEMVQKF--V 83
Query: 381 EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSA 440
EE+L +L++ + + ++ +Y VF
Sbjct: 84 EEVLRINYK------FLMSPIKTE-------QRQPSMMTRMYIEQRDRLYNDNQVF---- 126
Query: 441 AEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAV 500
NV+ +P L LL EL +L+ +
Sbjct: 127 -------AKYNVSRLQPYL----------------KLRQALL--ELRPAKNVLIDGVLGS 161
Query: 501 GLAIWVPSVANQAKETDASDKRTLA----RGYSSLSPMEDKNEVLWRRTDGADELELSVV 556
G K +A Y M+ K + W L++
Sbjct: 162 G-------------------KTWVALDVCLSYKVQCKMDFK--IFW----------LNL- 189
Query: 557 ENAADSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQ--- 613
+ + E +LE L+ L + I P SR+ + +K I S++
Sbjct: 190 ----KNCNSPETVLEMLQKLLYQIDPNWTSRSDH--------SSNIKLRIHSIQAELRRL 237
Query: 614 ------QNCVLV---VNGEDFLEGILTYGDIKRCLSKL---SSDNSKGDSIASD------ 655
+NC+LV V ++ C K+ + D +++
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAF----NL-SC--KILLTTRFKQVTDFLSAATTTHIS 290
Query: 656 VCNCCLTFLNSRSLSLL--CLSIS 677
+ + +T SLL L
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCR 314
Score = 31.7 bits (71), Expect = 1.1
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 19/95 (20%)
Query: 39 DLFKQ--LDRRFSDRRITFKDPPLSHSRSSS---FDHHNYVDARDSLTESAPPEWALL-- 91
LF+ LD RF +++I + S S Y + + ++ P L+
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY---KPYICDNDPKYERLVNA 547
Query: 92 LIGCLLGLASGLC---------VAFFNKGVHIIHE 117
++ L + L +A + I E
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 48.9 bits (117), Expect = 6e-07
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 566 EEMLLEELKLLQFS---IPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNG 622
++ S + + D V+ T+ E + + D ++ + VV+
Sbjct: 66 LRDIMAYQMEHDLSQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVD--ESFLPVVDA 123
Query: 623 EDFLEGILTYGDIKRCLSKLSSDNSK 648
E +GI+T I + ++ L D SK
Sbjct: 124 EGIFQGIITRKSILKAVNALLHDFSK 149
Score = 37.7 bits (88), Expect = 0.003
Identities = 10/64 (15%), Positives = 16/64 (25%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK 648
+K+ + T A + V VV E G + DI +
Sbjct: 23 PAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEI 82
Query: 649 GDSI 652
Sbjct: 83 MADT 86
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 47.8 bits (114), Expect = 1e-06
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
+V + M +D + L + +A+E D + VN + + EGILT I + L+K
Sbjct: 88 KVEQVMKQDIPVLKLEDSFAKALEMTID--HPFICAVNEDGYFEGILTRRAILKLLNKKV 145
Query: 644 SDNSK 648
+++
Sbjct: 146 RQHNR 150
Score = 41.2 bits (97), Expect = 2e-04
Identities = 9/58 (15%), Positives = 22/58 (37%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDN 646
S+ V + L+ A+ + + + V++ L G+++ I + L
Sbjct: 23 SSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIE 80
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 49.8 bits (119), Expect = 1e-06
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 576 LQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635
+ + Q++ + +D V TLK+A + M + V+VV+ + GILT GDI
Sbjct: 53 ILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDI 112
Query: 636 KRCLSKLSS--DNSKGDSIASDV 656
R S + +
Sbjct: 113 IRRYFAKSEKYKGVEIEPYYQRY 135
Score = 47.1 bits (112), Expect = 8e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
+V M+++ V + L T A+E K + VVN E L GI++ I
Sbjct: 2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILV 55
Score = 44.4 bits (105), Expect = 7e-05
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 548 ADELELSVVENAADSEAAEEMLLEELKLLQF-----SIPPCQVSRAMSKDFVKVALTVTL 602
E+ + + + EE +LE L F +P V+ M++D + +T+
Sbjct: 181 DSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTV 240
Query: 603 KEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
E M + V+ GE L G++ D+ + L K
Sbjct: 241 HEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK 279
Score = 32.5 bits (74), Expect = 0.41
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
++ + V LK A++++ + VV+ E L GI+ D+ R
Sbjct: 124 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLR 180
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 47.2 bits (113), Expect = 1e-06
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
+ M+K + V + +++EA M + ++V+N + + G T DI R
Sbjct: 8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR 61
Score = 34.1 bits (79), Expect = 0.045
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVV-NGEDFLEGILTYGDIKRCLSK 641
V R M+++ + + L E + M + + +L+ G+ + GI T D+ +
Sbjct: 74 VERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGK--IVGIFTLSDLLEASRR 129
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 47.8 bits (114), Expect = 1e-06
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 555 VVENAADSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQ 614
++ + E E L+++ V M D ++ + + + + +
Sbjct: 68 IMNSIFGLERIEFEKLDQIT----------VEEVMLTDIPRLHINDPIMKGFGMVIN--N 115
Query: 615 NCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK 648
V V N E EGI T + + L+K +K
Sbjct: 116 GFVCVENDEQVFEGIFTRRVVLKELNKHIRSLNK 149
Score = 39.7 bits (93), Expect = 8e-04
Identities = 8/60 (13%), Positives = 20/60 (33%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK 648
+ V + L+ A+ + + V++ L G++ I + L +
Sbjct: 22 EADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFE 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 1e-06
Identities = 87/600 (14%), Positives = 153/600 (25%), Gaps = 208/600 (34%)
Query: 8 PLRSSNQEDLESAPDSPS----------NRTSTPSAAGGIKDLFKQLDRRFSDRRITFKD 57
P +D P +P+ + PS G + F + + D
Sbjct: 44 PTEGFAADD---EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 58 PPLSHSRSSSFDHH-------------NYVDARDSLTESAP-PEWALLLIGCLLGLASGL 103
H+ ++ NY+ AR + L G A
Sbjct: 101 I---HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-- 155
Query: 104 CVAFFNKGVHIIHEWAWAGTPNEGAAWLR-LQRLADTWHRILLIPVTGGVIVGMMHGLLE 162
VA F G G ++ + L+ L T+H + G +I L E
Sbjct: 156 LVAIFG-G---------QGNTDD---YFEELRDLYQTYH-----VLVGDLIKFSAETLSE 197
Query: 163 ILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEG-PSVDIGKSCANGFS 221
++ + + QG +++ ++ P P D S S
Sbjct: 198 LIRTTLDAEKVFTQGLNILE-------WLE-----------NPSNTPDKDYLLSIP--IS 237
Query: 222 LMMENNRERKIALVAAG--AASGIASGFN-AAVAGCFFAIETVLRPLRAENSPPFTTAMI 278
+ I ++ + GF + + +
Sbjct: 238 CPL-------IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-------------SQGL 277
Query: 279 ILASVISSTVSTVLLGTQSAFTVPSYDL-KSAAELPLYLILGMLCGVVSV-VFTRLVAWF 336
+ A I+ T + +F + + A + L+ I GV +
Sbjct: 278 VTAVAIAET------DSWESF----FVSVRKAITV-LFFI-----GVRCYEAYPNTSLPP 321
Query: 337 TKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIW 396
+ D ++ G+P P L ++ T + + KT
Sbjct: 322 SILEDSLENNEGVP---SPML--------SIS-------NLTQEQVQDYVNKTN------ 357
Query: 397 LLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAE 456
+ L A K V +L +N N+ V+
Sbjct: 358 --SHLPAGKQVEISL--------------------------------VNG--AKNLVVSG 381
Query: 457 PQAYALVGMAATLASVCSVPLTSVLLLFELTRD-YRILL----PLMGAVGLAIWVP---- 507
P +L G+ TL + D RI L + P
Sbjct: 382 PPQ-SLYGLNLTLRKAKAPS----------GLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 508 --SVANQAKETDASDKRTLARGYSSLS-PMEDKNEVLWRRT-DGAD--ELELSVVENAAD 561
A+ D + P+ D T DG+D L S+ E D
Sbjct: 431 LLVPASDLINKDLVKNNVSFNA-KDIQIPVYD--------TFDGSDLRVLSGSISERIVD 481
Score = 48.9 bits (116), Expect = 6e-06
Identities = 53/324 (16%), Positives = 95/324 (29%), Gaps = 117/324 (36%)
Query: 414 GSGLVG-G--LYAPSLMIGAAVGAVF-----------GGSAAEIINSAIPGNVAVAEP-- 457
GS G G LY S A V+ G S +I+ + P N+ +
Sbjct: 1625 GSQEQGMGMDLYKTS----KAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGE 1679
Query: 458 ------QAYALVGMAATLASVCSVPLTSVLLLFELTRDYRI--------LL-------PL 496
+ Y A ++ L + + E+ LL P
Sbjct: 1680 KGKRIRENY----SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 497 MGAVGLAIWVPSVANQA--KETDASDKRTLARG-----YSSLS------PMEDKNEVLWR 543
+ + A + + + T A G Y++L+ +E EV++
Sbjct: 1736 LTLMEKAAF------EDLKSKGLIPADATFA-GHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 544 RTDGADELELSVVENAADSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLK 603
R G V + M+ +I P +V+ + S++ L+
Sbjct: 1789 R--G--MTMQVAVPRDELGRSNYGMI---------AINPGRVAASFSQE--------ALQ 1827
Query: 604 EAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK-------GDSIASDV 656
+E + V +VN N + GD A D
Sbjct: 1828 YVVERVGKRTGWLVEIVN-----------------------YNVENQQYVAAGDLRALDT 1864
Query: 657 CNCCLTFLNSRSLSLLCLSISLLM 680
L F+ + + ++ L SL +
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 46.2 bits (109), Expect = 4e-05
Identities = 79/482 (16%), Positives = 142/482 (29%), Gaps = 161/482 (33%)
Query: 262 LRPL-----RAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYL 316
RPL E+ TA +AS + + +L F + + AEL +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFA-ADDEPTTPAEL-VGK 63
Query: 317 ILGMLCGVVS----VVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGI 372
LG + +V F +++ F+ + L G
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFE---NCY---------LEG------------- 98
Query: 373 LYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVAT--ALCKGSGLVGGLYAPSLMIGA 430
+I H A T + +++ + + S + A
Sbjct: 99 --------NDI-HA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 431 A------VGAVFGGSAAEIINSAIPGNVA--VAEPQ----AY-ALVG-----MAATLASV 472
+ A+FGG GN E + Y LVG A TL+ +
Sbjct: 149 VGEGNAQLVAIFGGQ----------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 473 CSVPLTSVLLL---FELTR-----------DY----RILLPLMGAVGLAIWVPSVANQAK 514
L + + + DY I PL+G + LA +V V +
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV--VTAKLL 256
Query: 515 ETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENAADS-EAAEEMLLEEL 573
+ R+ +G + S ++ +V DS E+ + + +
Sbjct: 257 GFTPGELRSYLKGATGHS-----QGLV-----------TAVAIAETDSWESFFVSVRKAI 300
Query: 574 KLLQFSI--------PPCQVSRAMSKDFVKVALTVTLKEAIES-MKDGQQNCVLVVNGED 624
+L F I P + ++ +D ++ E + S M L ++
Sbjct: 301 TVL-FFIGVRCYEAYPNTSLPPSILEDSLENN------EGVPSPM--------LSISNLT 345
Query: 625 FLEGILTYGDIKRCLSKLSSDNSKGDSIASDVCNCCLTFLNSR----------SLSLLCL 674
E + Y + + S L + K I+ L N SL L L
Sbjct: 346 -QEQVQDY--VNKTNSHLPAG--KQVEIS-------LV--NGAKNLVVSGPPQSLYGLNL 391
Query: 675 SI 676
++
Sbjct: 392 TL 393
Score = 29.2 bits (65), Expect = 6.0
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 38/162 (23%)
Query: 517 DASDKR--TLARG---YSSLSPMEDKNEVLWRRTDGADELE---LSVVENAADSEAAEEM 568
DA R TL+ G + L P + A +L+ ++ + AA++
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTA-----SFFI---ASQLQEQFNKILPEPTEGFAADDE 53
Query: 569 LLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEG 628
+L V + + +V +E K GQ + VL + +F
Sbjct: 54 PTTPAEL---------VGKFLG--YVS--------SLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 629 ILTYGDIKRCLSKLSSDNSKGDSIASDVCNCCLTFLNSRSLS 670
L DI +KL +N ++ ++ +R ++
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKN---YITARIMA 133
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 48.2 bits (115), Expect = 3e-06
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 556 VENAADSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQN 615
+ + + ++ E+ + + V M ++ + + + EAIE+
Sbjct: 57 IVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVG 116
Query: 616 CVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK-GDSIASDV 656
+VN E+ L ++T D+ R L +N D I DV
Sbjct: 117 GAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDV 158
Score = 47.8 bits (114), Expect = 5e-06
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVN-GEDFLEGILTYGDIKRCLSKLS 643
+ A +K V V T T+++A+ +M + + + VVN G + + GI+T DI + S
Sbjct: 6 MKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGS 65
Query: 644 SDNSKGDSIASDV 656
N + +
Sbjct: 66 KYNLIREKHERNF 78
Score = 45.1 bits (107), Expect = 4e-05
Identities = 13/77 (16%), Positives = 28/77 (36%)
Query: 564 AAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE 623
++ I ++ M +D + LK+ E M + VV+
Sbjct: 204 GSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN 263
Query: 624 DFLEGILTYGDIKRCLS 640
++GI+T D+ + +
Sbjct: 264 LRIKGIITEKDVLKYFA 280
Score = 44.0 bits (104), Expect = 9e-05
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 566 EEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF 625
E ++ L + +++D + LK+ +M + VV+ E
Sbjct: 133 ERDVIRALL--DKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGR 189
Query: 626 LEGILTYGDIKRCLSKLSSDNSKGDSIASDVCN 658
L GI+T D + L + N ++ N
Sbjct: 190 LVGIITSTDFIKLLGSDWAFNHMQTGNVREITN 222
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 46.1 bits (110), Expect = 3e-06
Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF--LEGILTYGDIKRCLSK 641
+ S + + V + T T++E + + ++ ++ +++ DI R +++
Sbjct: 6 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65
Query: 642 LSSDNSKGDSIASDV 656
+ IA+
Sbjct: 66 RLDLDGPAMPIANSP 80
Score = 33.8 bits (78), Expect = 0.065
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642
+ + V T + A E M+ V+VVN L G+L+ D+ + L
Sbjct: 73 AMPIANSP-ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAIL 129
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 45.6 bits (109), Expect = 4e-06
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
V +SK + +++ EA + + N + +V+ L GI+T DI + L++
Sbjct: 3 VKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ 59
Score = 40.6 bits (96), Expect = 2e-04
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
+ M+++ + + M + V VV+ + GI+T DI R
Sbjct: 64 IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 45.7 bits (109), Expect = 5e-06
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644
V M+K+ + + EA E M + + + V++ E+ + GI+T DI L +
Sbjct: 10 VKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY 69
Query: 645 DNSK 648
Sbjct: 70 TLET 73
Score = 43.0 bits (102), Expect = 4e-05
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQ-----NCVLVVNGEDFLEGILTYGDIKRCL 639
+ M+KD + + ++ EAI+ M + N + VV+ + L GI++ GDI R +
Sbjct: 75 IGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI 134
Query: 640 SKL 642
SK+
Sbjct: 135 SKI 137
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 46.1 bits (110), Expect = 6e-06
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
+ +D V V V++ EA ++ + V+V + + + GI T D+ + ++
Sbjct: 28 DLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG 85
Score = 37.7 bits (88), Expect = 0.004
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI-KRCLSKLS 643
VS AM+K+ V+ T + +E M G+ V V L GI++ GD+ K + ++
Sbjct: 95 VSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGR-LAGIISIGDVVKARIGEIE 153
Query: 644 SDNSKGDSIAS 654
++ + +
Sbjct: 154 AEAEHIKAYIA 164
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 44.8 bits (107), Expect = 8e-06
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
+V M D + +T +L++ + + + + +VV GI+T D+ +++
Sbjct: 2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLEAIAE 58
Score = 35.6 bits (83), Expect = 0.011
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638
+ +V M +D V ++ T+KEA E M +LV ++ + G+++ DI R
Sbjct: 61 DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE-IIGVISATDILRA 119
Query: 639 L 639
Sbjct: 120 K 120
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 45.5 bits (108), Expect = 1e-05
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644
+ M K KV +K+ + + VV+ + GI+T D+ R LS+ S
Sbjct: 77 IRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASI 136
Query: 645 DNSKGDSIASDVCNCC 660
+ D + C
Sbjct: 137 TDILLSHRTKDYQHLC 152
Score = 44.3 bits (105), Expect = 3e-05
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
+V + M+ +F V T+ +A++ M + ++V + G+L+ I +
Sbjct: 10 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIK 63
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 44.1 bits (105), Expect = 1e-05
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642
M+ + + + A+ M+ + VV+ + L+GI++ DI R + +
Sbjct: 69 AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126
Score = 43.3 bits (103), Expect = 2e-05
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644
V M + V L + + M + V+VV+G GI+T DI + + K S
Sbjct: 6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK-PVGIITERDIVKAIGKGKS 64
Query: 645 DNSK 648
+K
Sbjct: 65 LETK 68
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 45.5 bits (108), Expect = 2e-05
Identities = 14/74 (18%), Positives = 27/74 (36%)
Query: 576 LQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635
L V +S V + A+ + Q+ + VV+ E L+G ++ D
Sbjct: 65 LLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDF 124
Query: 636 KRCLSKLSSDNSKG 649
L + + + G
Sbjct: 125 LEALIEALAMDVPG 138
Score = 43.2 bits (102), Expect = 1e-04
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
V + +++DF V + T++E + M+ Q N +V + E G++ D+
Sbjct: 15 VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLD 67
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 43.3 bits (103), Expect = 3e-05
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
M+ V TL A + M++ + + +D L G+LT DI
Sbjct: 9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI 62
Score = 37.1 bits (87), Expect = 0.004
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
V +++E + M++ Q V V++ L GI+T DI R L +
Sbjct: 76 AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHR-LVGIVTEADIARHLPE 131
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 43.1 bits (102), Expect = 6e-05
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644
+ M D VA LKE+ M+ + C+ VV +D L GI+T D L
Sbjct: 80 LFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLE 138
Query: 645 DNSKGDSIASD 655
+ + D
Sbjct: 139 LQEESEPDELD 149
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSK 648
M++ + T TL +A M+ V +V+ L GI++ D+ +++
Sbjct: 11 MTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQ 70
Query: 649 GDSIASDV 656
GDS+A +
Sbjct: 71 GDSLAFET 78
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 43.1 bits (102), Expect = 6e-05
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 574 KLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYG 633
+LL + QV S V + V++ +AI +M + VV+ + L G+L+
Sbjct: 8 QLLADKLKKLQVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRK 66
Query: 634 DIKR 637
D+ R
Sbjct: 67 DLLR 70
Score = 35.4 bits (82), Expect = 0.024
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 585 VSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF---LEGILTYGDIKRCL 639
V M++ + + + + + + Q + + V+ D + G +T ++ + L
Sbjct: 83 VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL 142
Query: 640 SKLSSD 645
LS +
Sbjct: 143 VSLSEN 148
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS
domain, structural genomics, PSI-2, P structure
initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae
subsp} PDB: 3fna_A*
Length = 149
Score = 42.1 bits (100), Expect = 8e-05
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 595 KVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
V L TL++A+ + + + + + GI T GD++R
Sbjct: 42 HVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT 88
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 42.2 bits (100), Expect = 9e-05
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
Q + +K L TL+ I + + + + ++VV+ D ++GI++ DI + L
Sbjct: 94 QHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQAL 149
Score = 37.6 bits (88), Expect = 0.004
Identities = 8/66 (12%), Positives = 25/66 (37%)
Query: 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640
++ + V T + A+ + + + VV+ + + I + D+ +
Sbjct: 19 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 78
Query: 641 KLSSDN 646
+ + +N
Sbjct: 79 EKTYNN 84
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 43.8 bits (103), Expect = 1e-04
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
Q + +K L TL+ I + + + + ++VV+ D ++GI++ DI + L
Sbjct: 266 QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG 325
Query: 644 SDN 646
+
Sbjct: 326 GEK 328
Score = 42.2 bits (99), Expect = 4e-04
Identities = 12/94 (12%), Positives = 35/94 (37%)
Query: 553 LSVVENAADSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDG 612
L ++ + + + + E K S ++ + V T + A+
Sbjct: 163 LYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQH 222
Query: 613 QQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDN 646
+ + + VV+ + + I + D+ ++ + +N
Sbjct: 223 RVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN 256
Score = 34.9 bits (80), Expect = 0.069
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED-FLEGILTYGDIKRCLSKLSSDNS 647
K V ++ +L +A+ S+ + + + V++ E ILT+ I + L ++
Sbjct: 124 SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFP 183
Query: 648 KGDSIASDVC 657
K + ++ +
Sbjct: 184 KPEFMSKSLE 193
Score = 33.0 bits (75), Expect = 0.30
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 590 SKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF-LEGILTYGDIKRCLSKL 642
S V ++ +K+A ++ + + + G+LT D L +
Sbjct: 44 SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY 97
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 41.9 bits (99), Expect = 1e-04
Identities = 7/57 (12%), Positives = 22/57 (38%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640
V + +S V ++E ++ + + + V ++ L G++ + +
Sbjct: 17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSG 73
Score = 39.6 bits (93), Expect = 9e-04
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
S M V V + L+EA++ M D + VV+ + + G L +I L K
Sbjct: 98 ASEIMLDP-VYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK 153
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 41.3 bits (97), Expect = 3e-04
Identities = 17/76 (22%), Positives = 34/76 (44%)
Query: 570 LEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGI 629
EL+ L V M+ + V + L++A + + + + VV+ + L GI
Sbjct: 85 FNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGI 144
Query: 630 LTYGDIKRCLSKLSSD 645
LT G++ R ++ +
Sbjct: 145 LTRGNVVRAALQIKRN 160
Score = 35.9 bits (83), Expect = 0.020
Identities = 9/55 (16%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 585 VSRAMS--KDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
V M+ ++ V + ++ +A+E + + + + V++ L G+++ D+
Sbjct: 6 VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLA 60
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 38.9 bits (91), Expect = 8e-04
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
S D+ L + +A + C V++GE +L G++ +
Sbjct: 6 TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYL-GMVHLSRLLEGRKGWP 64
Query: 644 SDNSK 648
+ K
Sbjct: 65 TVKEK 69
Score = 38.9 bits (91), Expect = 9e-04
Identities = 7/57 (12%), Positives = 23/57 (40%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
+ + + L + + S+ + + V + + + EG+++ I L++
Sbjct: 70 LGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE 126
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 39.5 bits (93), Expect = 8e-04
Identities = 8/64 (12%), Positives = 25/64 (39%)
Query: 578 FSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
IP ++ + +T + + I+ + G+ + V +++ +L + D+
Sbjct: 6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLG 65
Query: 638 CLSK 641
+
Sbjct: 66 LIKG 69
Score = 37.5 bits (88), Expect = 0.003
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
+ L +++++ + + VV+ L G+LT DI + +
Sbjct: 84 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 139
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
+ + V + +AI+ M + +LVV+G+D + GI+T D R
Sbjct: 14 KAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDYAR 66
Score = 35.7 bits (83), Expect = 0.015
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
V M+ V + + E + M + + + V++G L G+++ GD+ + +
Sbjct: 80 VEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGK-LIGLISIGDLVKSVIA 135
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 39.5 bits (91), Expect = 0.002
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638
+V +A V+LK A M+D + V +G + L G+L+ +I
Sbjct: 8 KVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITAT 62
Score = 30.3 bits (67), Expect = 2.0
Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 583 CQVSRAMSKD-FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635
V M+KD V V+ +++ +M + + + V++ + + G + +
Sbjct: 185 LPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHL 238
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 39.9 bits (93), Expect = 0.002
Identities = 10/61 (16%), Positives = 23/61 (37%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
+ L +++++ + + VV+ L G+LT DI + + S
Sbjct: 263 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLGS 322
Query: 644 S 644
+
Sbjct: 323 N 323
Score = 36.5 bits (84), Expect = 0.026
Identities = 8/70 (11%), Positives = 27/70 (38%)
Query: 577 QFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 636
IP ++ + +T + + I+ + G+ + V +++ +L + D+
Sbjct: 184 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 243
Query: 637 RCLSKLSSDN 646
+ ++
Sbjct: 244 GLIKGGIYND 253
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 39.1 bits (91), Expect = 0.004
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 569 LLEELKLLQFSIPPCQVSRAMSK------DFVKVALTVTLKEAIESMKDGQQNCVLVVNG 622
++ ++ +S V A+ K T L +++K + + + VV+
Sbjct: 237 VMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE 296
Query: 623 EDFLEGILTYGDIKRCL 639
LEGIL+ DI +
Sbjct: 297 NLKLEGILSLADILNYI 313
Score = 34.9 bits (80), Expect = 0.073
Identities = 8/58 (13%), Positives = 21/58 (36%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDN 646
+ ++ + + I+ + + + V +VN E L + D+ + N
Sbjct: 191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN 248
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 39.2 bits (92), Expect = 0.004
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 586 SRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED-FLEGILTYGDIKRCLSKLSS 644
+ V + T+ EAI MK + + + VV+ +D + G++ + ++++ S
Sbjct: 388 ELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETL---ITQIVS 444
Query: 645 DNSKGDSIASDV 656
N + A
Sbjct: 445 MNRQQSDPAIKA 456
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 35.3 bits (82), Expect = 0.005
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 594 VKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI-KRCLSK 641
+ V T+ + + + +V+ G++ + G++T DI + ++K
Sbjct: 3 IVVQPKDTVDRVAKILSRNKAGSAVVMEGDE-ILGVVTERDILDKVVAK 50
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 36.0 bits (84), Expect = 0.008
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI-KRCLSK 641
V M++ V L T ++ + + + + + V++ + G+L+ GD+ K +S+
Sbjct: 76 VKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGK-VIGLLSIGDLVKDAISQ 132
Score = 35.3 bits (82), Expect = 0.016
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
+ + V + ++ A++ M +LV+ E L GILT D R
Sbjct: 10 HLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEK-LVGILTERDFSR 62
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 35.0 bits (80), Expect = 0.032
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGED--FLEGILTYGDIKRCLS 640
+V M+ +A L+E ++ + +V + L GI+ + + L
Sbjct: 14 RVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ 72
Score = 32.3 bits (73), Expect = 0.29
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 588 AMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNS 647
+ + TL +A K + V + G +++ ++K+ +S L++ +
Sbjct: 95 PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLTNPPA 153
Query: 648 KGDSI 652
+ +
Sbjct: 154 PKEFL 158
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 35.7 bits (83), Expect = 0.041
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 544 RTDGADELELSVVE---NAADSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTV 600
D + L+ S + SE A E ++EL L + M+ +FV +
Sbjct: 101 AVDLLNMLDKSQKAKYLSLLSSEEAGE--IKEL--LHY--EDETAGAIMTTEFVSIVANQ 154
Query: 601 TLKEAIESMKDGQQ-----NCVLVVNGEDFLEGILTYGDI 635
T++ A+ +K+ V VV+ E+ L G+++ D+
Sbjct: 155 TVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDL 194
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.050
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 18/39 (46%)
Query: 5 ERRPLRSSNQEDLES-----APDSPSNRTSTPSAAGGIK 38
E++ L+ L++ A D S P+ A IK
Sbjct: 18 EKQALKK-----LQASLKLYADD------SAPALA--IK 43
Score = 30.7 bits (68), Expect = 0.84
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 4/16 (25%)
Query: 421 LY----APSLMIGAAV 432
LY AP+L I A +
Sbjct: 31 LYADDSAPALAIKATM 46
Score = 30.3 bits (67), Expect = 1.1
Identities = 5/26 (19%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 258 IETVLRPLRAENSPPFTTAMIILASV 283
++ L+ +++P A+ I A++
Sbjct: 25 LQASLKLYADDSAP----ALAIKATM 46
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 33.7 bits (78), Expect = 0.11
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 544 RTDGADELELSVVE---NAADSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTV 600
+ +D L S + + E Q+ ++ R + ++
Sbjct: 18 LIEWSDYLPESFTDRALAQMGERQRQR--FELY--DQY--SENEIGRYTDHQMLVLSDKA 71
Query: 601 TLKEAIESMKDGQQNC---VLVVNGEDFLEGILTYGDI 635
T+ +A + + +C + +V+ D G + DI
Sbjct: 72 TVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDI 109
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 33.7 bits (78), Expect = 0.18
Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 41/126 (32%)
Query: 549 DELELSVVENAADSEAA---EEM-------LLEEL------------------------K 574
E + ++ EE+ L+ +
Sbjct: 69 PEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEA 128
Query: 575 LLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQ-----NCVLVVNGEDFLEGI 629
L ++ + M+ ++V V +T++E + ++ + VV+ + L+G+
Sbjct: 129 LARY--EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGV 186
Query: 630 LTYGDI 635
L+ D+
Sbjct: 187 LSLRDL 192
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 34.0 bits (79), Expect = 0.19
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635
V M+K+ + V ++ ++EA++ M + + + + VV+ L G++T D+
Sbjct: 152 VKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDL 202
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 32.2 bits (73), Expect = 0.36
Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 581 PPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLS 640
P ++ + V ++ ++ + LV + L GI+T D+ + ++
Sbjct: 106 PTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA 164
Query: 641 KLSSDN 646
++++ +
Sbjct: 165 QMANQD 170
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 31.5 bits (72), Expect = 1.0
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 587 RAMSKDFVKVALTVTLKEAIESMKDGQQ-----NCVLVVNGEDFLEGILTYGDI 635
M+ ++V V +T++E + ++ + VV+ + L+G+L+ D+
Sbjct: 159 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDL 212
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 1.3
Identities = 65/429 (15%), Positives = 102/429 (23%), Gaps = 133/429 (31%)
Query: 219 GFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAE--NSPPFTTA 276
G + E + ++ V + SG+ G A+ + + +
Sbjct: 1028 GITDPYEMYKYVHVSEVGNCSGSGM---------GGVSALRGMFKDRFKDEPVQNDILQE 1078
Query: 277 MIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLC--GVVSVVFTRLVA 334
I + +S+ V+ +L+ + P A C V SV
Sbjct: 1079 SFI--NTMSAWVNMLLIS----SSGPIKTPVGA------------CATSVESV------- 1113
Query: 335 WFTKSFDFIKE---KFGLPPVVCPALGGLGAGIIALRYPGILYWGF-------TNVEEIL 384
+ I + + GG G F +EE
Sbjct: 1114 --DIGVETILSGKARI----CIV---GGYDDFQE----EGSF--EFGNMKATSNTLEEFE 1158
Query: 385 HTG--KTASAP--------------GIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMI 428
H S P GI ++ Q AL G P I
Sbjct: 1159 HGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQAD------LALKMG--------VP---I 1201
Query: 429 GAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR 488
V +A + I ++P P L +SV L
Sbjct: 1202 YGIV--AMAATATDKIGRSVP------APGKGILTTAREHHSSVKYASPN-------LNM 1246
Query: 489 DYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGA 548
YR + + WV + K P ED+NE L RT
Sbjct: 1247 KYRKRQLVTREAQIKDWVENELEALKLEAEE------------IPSEDQNEFLLERTREI 1294
Query: 549 DELELSVVENAA--------DSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTV 600
S + A + L L + + + A A
Sbjct: 1295 HNEAESQLRAAQQQWGNDFYKRDPRIAPL--RGALATYGLTIDDLGVASFHGTSTKANDK 1352
Query: 601 TLKEAIESM 609
I M
Sbjct: 1353 NESATINEM 1361
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 31.0 bits (71), Expect = 1.4
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 585 VSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635
VS M+ V L EA + + + + N + +++ + L I+ D
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDY 215
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein,
transporter, enzyme IIC, phosphoenolpyruva
phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A
{Bacillus cereus}
Length = 442
Score = 30.4 bits (69), Expect = 1.9
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 5/117 (4%)
Query: 266 RAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLY--LILGMLCG 323
+ + L + + +T V D A L L + M+
Sbjct: 94 EYYKVDALASGALSLVTFLLATPFQVAYIMPGTKESILVDGVIPAALMGSQGLFVAMIIA 153
Query: 324 VVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNV 380
++S + + + IK +PP V + L G I + I+ F +
Sbjct: 154 IIST---EIYRFLVQKKMIIKMPETVPPAVTRSFAALIPGFIVVTVVWIIRLIFEHT 207
>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A
{Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A
2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A*
2zly_A* 2zm9_A* 2zm2_A*
Length = 392
Score = 30.2 bits (68), Expect = 2.4
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 368 RYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATAL 411
+ P W F ++ E++ + + P LA +A L
Sbjct: 27 QEPPHNRWAFAHLGEMVPSAAVSRRPVNAPGHALARLGAIAAQL 70
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 29.8 bits (68), Expect = 3.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 585 VSRAMSK--DFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 636
+S M+ + V VTLKEA E ++ ++ + +VN D L I+ D+K
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLK 228
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 29.7 bits (67), Expect = 3.6
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 12/83 (14%)
Query: 316 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYW 375
L + + + L DF G+ GL II +
Sbjct: 380 LWTAAIVFFSAHLVMFLNKSLD-EMDFWAGTIGVV------FFGLTELIIFFWI-----F 427
Query: 376 GFTNVEEILHTGKTASAPGIWLL 398
G E ++ G P I+
Sbjct: 428 GADKAWEEINRGGIIKVPRIYYY 450
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 29.1 bits (66), Expect = 4.8
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 507 PSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENAADSEAAE 566
P V + D L+R ++ + + + + + + D E
Sbjct: 36 PDVVS-----DTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELE- 89
Query: 567 EMLLEELKLLQFSIP 581
EM EELK + +
Sbjct: 90 EMAKEELKNSKVAKE 104
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 29.0 bits (64), Expect = 6.8
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 112 VHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSS 171
+++++EWA G ++ + ++ G +V ++ L EI ++K +S
Sbjct: 922 MNVVYEWA------RGLSFKEIMEMSP---------EAEGTVVRVITWLDEICREVKTAS 966
>2r0x_A Possible flavin reductase; split barrel-like, structural genomics,
joint center for STR genomics, JCSG, protein structure
initiative; HET: MSE SO4; 1.06A {Haemophilus somnus
129PT}
Length = 158
Score = 27.9 bits (63), Expect = 7.8
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 463 VGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKR 522
G A+ +VCSV + LL + + R + L + + +++
Sbjct: 31 HGFTAS--AVCSVTDSPPTLLVCINSNARAYEHFVKNRVLMV---NTL-------TAEQS 78
Query: 523 TLARGYSSLSPMEDK-NEVLWRR 544
+L+ ++S E++ + W
Sbjct: 79 SLSNIFASPLSQEERFSNASWTT 101
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 28.6 bits (65), Expect = 8.6
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 585 VSRAMSKD-FVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635
+S M+K+ + + TL EA + ++ + + +V+ L+G++T DI
Sbjct: 177 ISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDI 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,330,005
Number of extensions: 657284
Number of successful extensions: 1603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1531
Number of HSP's successfully gapped: 115
Length of query: 683
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 583
Effective length of database: 3,909,693
Effective search space: 2279351019
Effective search space used: 2279351019
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)