RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005685
(683 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 193 bits (491), Expect = 2e-55
Identities = 98/430 (22%), Positives = 166/430 (38%), Gaps = 38/430 (8%)
Query: 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIP 147
A+L + ++G GL F+KGV + L AD + +L +
Sbjct: 17 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGA----------LVHTADNYPLLLTVA 66
Query: 148 VTGGVIVGMMHGLLEI----------LNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTL 197
++ M L + +I+ + R +K TL
Sbjct: 67 FLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLP---VKFFGGLGTL 123
Query: 198 GTGCSLGPEGPSVDIGKSCANGFS-LMMENNRERKIALVAAGAASGIASGFNAAVAGCFF 256
G G LG EGP+V IG + + E + L+A GAA+G+A+ FNA +AG F
Sbjct: 124 GGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILF 183
Query: 257 AIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYL 316
IE + R + + + ++S+ + + + V L LYL
Sbjct: 184 IIEEMRPQFR---YTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYL 240
Query: 317 ILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWG 376
ILG++ G+ +F + V + V+ G G++ P G
Sbjct: 241 ILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGG 300
Query: 377 FTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVF 436
F + + + + V+ T LC SG GG++AP L +G +G F
Sbjct: 301 FNLIPIATAGNFSMGMLVFIFVAR-----VITTLLCFSSGAPGGIFAPMLALGTVLGTAF 355
Query: 437 GGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPL 496
G + P E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP+
Sbjct: 356 G----MVAVELFPQYHL--EAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPM 409
Query: 497 MGAVGLAIWV 506
+ A +
Sbjct: 410 IITGLGATLL 419
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 41.0 bits (95), Expect = 8e-05
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
Q + +K L TL+ I + + + + ++VV+ D ++GI++ DI + L
Sbjct: 83 ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 140
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 41.3 bits (96), Expect = 9e-05
Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 6/120 (5%)
Query: 527 GYSSLSPMEDKNEVLWRRTDGADELELSVVENAADSEAAEEMLLEELKLLQFSIPPCQVS 586
G + + K + D + + + + EL+ +
Sbjct: 45 GVRAAPLWDSKKQSFVGMLTITD-----FINILHRYYKSALVQIYELEEHKIETWREVYL 99
Query: 587 RAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF-LEGILTYGDIKRCLSKLSSD 645
+ K V ++ +L +A+ S+ + + + V++ E ILT+ I + L ++
Sbjct: 100 QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 159
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 39.4 bits (91), Expect = 2e-04
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDI 635
+ M+K + V + +++EA M + ++V+N + + G T DI
Sbjct: 7 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI 57
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 38.7 bits (89), Expect = 5e-04
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
+V M++ + T TL +A M+ V +V+ L GI++ D+
Sbjct: 3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSL 62
Query: 644 SDNSKGDSIASDVCN 658
+++GDS+A +
Sbjct: 63 QRSAQGDSLAFETPL 77
Score = 31.8 bits (71), Expect = 0.11
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642
+ M D VA LKE+ M+ + C+ VV +D L GI+T D L
Sbjct: 75 TPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINL 133
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 38.0 bits (87), Expect = 6e-04
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILT 631
+V + +++DF V + T++E + M+ Q N +V + E G++
Sbjct: 2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN 49
Score = 32.2 bits (72), Expect = 0.058
Identities = 13/67 (19%), Positives = 24/67 (35%)
Query: 573 LKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTY 632
+ L V +S V + A+ + Q+ + VV+ E L+G ++
Sbjct: 50 KEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSL 109
Query: 633 GDIKRCL 639
D L
Sbjct: 110 HDFLEAL 116
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 38.0 bits (87), Expect = 8e-04
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 571 EELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGIL 630
EEL + + + D V V + L+EA++ M D + VV+ + + G L
Sbjct: 71 EELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDL 130
Query: 631 TYGDIKRCLSK 641
+I L K
Sbjct: 131 NSLEILLALWK 141
Score = 36.5 bits (83), Expect = 0.003
Identities = 7/78 (8%), Positives = 25/78 (32%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644
V + +S V ++E ++ + + + V ++ L G++ + +
Sbjct: 6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFF 65
Query: 645 DNSKGDSIASDVCNCCLT 662
+ + +
Sbjct: 66 GFIPKEELIRSSMKRLIA 83
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 37.5 bits (86), Expect = 0.001
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 573 LKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTY 632
L+ L + ++ +++ + V + ++ ++++D V V + +D L GI+T
Sbjct: 55 LRDLIVNDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTV 114
Query: 633 GDI 635
DI
Sbjct: 115 DDI 117
Score = 30.5 bits (68), Expect = 0.27
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNC-----VLVVNGEDFLEGILTYGDIKRC 638
M+ +FV + T++ A+ +K+ V VV+ E+ L G+++ D+
Sbjct: 3 AGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN 61
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
+ +D V +TLKEA E ++ ++ + +VN D L I+ D+K+
Sbjct: 62 FLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKK 117
Score = 27.4 bits (60), Expect = 2.4
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVV---NGEDFLEGILTYGDIKRCLSK 641
D V ++ +++ E+ + + L GI++ DI +
Sbjct: 2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE 57
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 37.7 bits (86), Expect = 0.001
Identities = 14/77 (18%), Positives = 29/77 (37%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
++ + V LK A++++ + VV+ E L GI+ D+ R +
Sbjct: 5 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 64
Query: 644 SDNSKGDSIASDVCNCC 660
S + +S+
Sbjct: 65 IMKSTELAASSEEEWIL 81
Score = 34.2 bits (77), Expect = 0.022
Identities = 15/98 (15%), Positives = 34/98 (34%)
Query: 542 WRRTDGADELELSVVENAADSEAAEEMLLEELKLLQFSIPPCQVSRAMSKDFVKVALTVT 601
+ ++ + E + + +P V+ M++D + +T
Sbjct: 58 RDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMT 117
Query: 602 LKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
+ E M + V+ GE L G++ D+ + L
Sbjct: 118 VHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 155
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 37.5 bits (86), Expect = 0.001
Identities = 8/86 (9%), Positives = 29/86 (33%)
Query: 578 FSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
IP ++ + +T + + I+ + G+ + V +++ +L + D+
Sbjct: 4 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLG 63
Query: 638 CLSKLSSDNSKGDSIASDVCNCCLTF 663
+ ++ + +
Sbjct: 64 LIKGGIYNDLSLSVGEALMRRSDDFE 89
Score = 37.1 bits (85), Expect = 0.002
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
+ L +++++ + + VV+ L G+LT DI + +
Sbjct: 87 DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 137
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 37.6 bits (86), Expect = 0.001
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILT 631
+V + M+ +F V T+ +A++ M + ++V + G+L+
Sbjct: 4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLS 51
Score = 34.1 bits (77), Expect = 0.018
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 604 EAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLS 643
+ + + VV+ + GI+T D+ R LS+ S
Sbjct: 90 DVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRAS 129
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 38.0 bits (87), Expect = 0.001
Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 579 SIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638
+ P ++ + V ++ ++ + LV + L GI+T D+ +
Sbjct: 96 TPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKH 154
Query: 639 LSKLSS 644
++++++
Sbjct: 155 IAQMAN 160
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 35.6 bits (81), Expect = 0.004
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
M+ V TL A + M++ + + +D L G+LT DI
Sbjct: 3 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKG 57
Score = 28.3 bits (62), Expect = 1.2
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 582 PCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
V +++E + M++ Q V V++ E L GI+T DI R L
Sbjct: 66 TATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL 122
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 35.8 bits (81), Expect = 0.004
Identities = 15/65 (23%), Positives = 23/65 (35%)
Query: 578 FSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
+ I + M+ + V V T AI M + VV+ D GI+T +
Sbjct: 69 YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLL 128
Query: 638 CLSKL 642
L
Sbjct: 129 LYKDL 133
Score = 35.0 bits (79), Expect = 0.009
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGI 629
+ M K+ ++ L A + + +G ++V N + +EG+
Sbjct: 2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGL 45
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 34.8 bits (79), Expect = 0.008
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFL 626
+V M D + +T +L++ + + + + +VV +
Sbjct: 1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV 43
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 127
Score = 34.5 bits (78), Expect = 0.011
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644
V M + V L + + M + V+VV+G + GI+T DI + + K S
Sbjct: 6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGKS 64
Query: 645 DNSKGDSIASDVCNCC 660
+K + +
Sbjct: 65 LETKAEEFMTASLITI 80
Score = 31.4 bits (70), Expect = 0.14
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 607 ESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKL 642
M+ + VV+ + L+GI++ DI R + +
Sbjct: 91 ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 34.5 bits (78), Expect = 0.011
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLV 619
+V M+++ V + L T A+E K + V
Sbjct: 2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPV 37
Score = 31.8 bits (71), Expect = 0.10
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 577 QFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIK 636
+ Q++ + +D V TLK+A + M + V+VV+ + GILT GDI
Sbjct: 54 LVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113
Query: 637 RCL 639
R
Sbjct: 114 RRY 116
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 34.2 bits (77), Expect = 0.019
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
V MS + V L +A++ M + V++ ++ + GI+T + + L
Sbjct: 4 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQL 58
Score = 30.8 bits (68), Expect = 0.29
Identities = 12/61 (19%), Positives = 26/61 (42%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644
V M + V + ++ A M + +L++N ++ + GI+T D+ L +
Sbjct: 75 VKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV 134
Query: 645 D 645
Sbjct: 135 M 135
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 33.0 bits (74), Expect = 0.044
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 583 CQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
A T L +++K + + + VV+ LEGIL+ DI +
Sbjct: 76 LLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI 132
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 32.6 bits (73), Expect = 0.059
Identities = 5/55 (9%), Positives = 19/55 (34%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRC 638
+ S + + V + T T++E + + ++ ++ + +
Sbjct: 2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL 56
Score = 27.6 bits (60), Expect = 2.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 606 IESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSS 644
E M+ V+VVN L G+L+ D+ + L
Sbjct: 89 AEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLE 127
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 32.7 bits (73), Expect = 0.062
Identities = 5/58 (8%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 580 IPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
+ + + + ++ +L++ + V + L G++ +I+
Sbjct: 100 VVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQA 156
Score = 27.3 bits (59), Expect = 4.4
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGE--DFLEGILTYGDIKRCLSK 641
QV M +D +A T T + + ++ + V+ + L G + +++ L +
Sbjct: 12 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR 71
Query: 642 LSSDN 646
S
Sbjct: 72 RISAY 76
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 30.2 bits (67), Expect = 0.36
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 585 VSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKR 637
S+ V A+ L+ A + + + + +V+ L G++T DI++
Sbjct: 62 SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEK 114
Score = 28.7 bits (63), Expect = 1.1
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDF--LEGILTYGDI 635
+ D + + EA E M+ + + V +V L GI+T D+
Sbjct: 3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM 51
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 30.1 bits (67), Expect = 0.37
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 570 LEELKLLQFSIPPCQVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGI 629
+ LL + QV M++ V L T ++ + + + + + V++ + + G+
Sbjct: 57 SRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGL 115
Query: 630 LTYGDIKR 637
L+ GD+ +
Sbjct: 116 LSIGDLVK 123
Score = 27.4 bits (60), Expect = 2.6
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 584 QVSRAMSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
+ + V + ++ A++ M +LV+ E + GILT D R
Sbjct: 6 HLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLV-GILTERDFSRKS 60
>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 144
Score = 29.8 bits (66), Expect = 0.54
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 587 RAMSKDFVKVALTVTLKEAIESMKDGQQNCVL-----VVNGEDFLEGILTYGDIKRCLSK 641
M+ ++V V +T++E + ++ + VV+ + L+G+L+ D+
Sbjct: 5 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--- 61
Query: 642 LSSDNSKGDSIASDVCNCC 660
++ I +
Sbjct: 62 --DPRTRVAEIMNPKVVYV 78
Score = 29.0 bits (64), Expect = 0.94
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 589 MSKDFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCL 639
M+ V V +E M D + VV+ E L GI+T D+ L
Sbjct: 71 MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVL 121
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 27.2 bits (60), Expect = 1.3
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 634 DIKRCLSKLSSDNSKGDSIASDVCNCCLTFLNSRSLSLLCLSISLL 679
+I++CL S SK ++ ++ CC + RS+ C
Sbjct: 13 EIQKCLQANSYMESKCQAVIQELRKCCAQYPKGRSVV--CSGFEKE 56
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus
subtilis [TaxId: 1423]}
Length = 132
Score = 27.7 bits (60), Expect = 2.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 613 QQNCVLVVNGEDFLEGILTYGDIKRCLSK 641
V V N E EGI T + + L+K
Sbjct: 102 NNGFVCVENDEQVFEGIFTRRVVLKELNK 130
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 26.6 bits (58), Expect = 9.6
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 223 MMENNRERKIALVAAGAASGIASGFNAAVAGCF 255
M+ +KI ++ +G G A G NAA+ G
Sbjct: 1 MI-----KKIGVLTSG---GDAPGMNAAIRGVV 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,415,437
Number of extensions: 112079
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 49
Length of query: 683
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 592
Effective length of database: 1,158,166
Effective search space: 685634272
Effective search space used: 685634272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)