Query 005686
Match_columns 683
No_of_seqs 243 out of 2446
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 12:12:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 4.1E-90 9E-95 670.9 44.6 664 4-678 2-679 (885)
2 KOG2171 Karyopherin (importin) 100.0 3.5E-67 7.6E-72 546.9 57.3 605 15-680 4-626 (1075)
3 KOG1241 Karyopherin (importin) 100.0 1.3E-57 2.8E-62 451.9 41.3 584 16-670 2-732 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 2.6E-46 5.7E-51 359.2 46.3 583 17-668 6-730 (858)
5 KOG1991 Nuclear transport rece 100.0 2.1E-38 4.6E-43 325.3 53.0 613 14-666 3-706 (1010)
6 KOG2171 Karyopherin (importin) 100.0 5.1E-34 1.1E-38 299.2 48.5 584 7-664 32-686 (1075)
7 KOG1992 Nuclear export recepto 100.0 1.9E-32 4.2E-37 275.2 45.7 601 12-663 2-686 (960)
8 KOG2274 Predicted importin 9 [ 100.0 4.1E-29 8.9E-34 254.1 47.8 600 15-673 4-671 (1005)
9 KOG2023 Nuclear transport rece 100.0 2.6E-30 5.6E-35 253.8 31.3 584 7-681 23-723 (885)
10 COG5656 SXM1 Importin, protein 100.0 2E-27 4.4E-32 236.3 48.1 520 15-572 3-589 (970)
11 KOG1241 Karyopherin (importin) 100.0 3.8E-26 8.2E-31 228.6 43.8 592 10-675 84-794 (859)
12 KOG1993 Nuclear transport rece 100.0 9.1E-26 2E-30 226.3 42.0 601 17-666 2-708 (978)
13 KOG1824 TATA-binding protein-i 100.0 1.4E-23 3.1E-28 214.1 44.7 548 62-659 16-690 (1233)
14 KOG2021 Nuclear mRNA export fa 99.9 1.5E-21 3.2E-26 195.2 41.1 604 15-667 3-744 (980)
15 COG5215 KAP95 Karyopherin (imp 99.9 2.2E-19 4.7E-24 174.4 45.5 589 12-675 90-792 (858)
16 KOG1824 TATA-binding protein-i 99.9 8.8E-19 1.9E-23 179.6 49.3 563 26-664 58-741 (1233)
17 KOG2022 Nuclear transport rece 99.9 2E-18 4.3E-23 176.6 50.1 603 12-671 4-756 (982)
18 KOG0213 Splicing factor 3b, su 99.9 1.1E-18 2.5E-23 174.2 43.9 596 9-680 357-1014(1172)
19 COG5657 CSE1 CAS/CSE protein i 99.9 3E-19 6.4E-24 183.6 38.8 563 18-617 7-628 (947)
20 COG5101 CRM1 Importin beta-rel 99.9 1.7E-18 3.7E-23 170.1 41.4 523 15-574 14-673 (1053)
21 KOG1242 Protein containing ada 99.8 8.6E-17 1.9E-21 160.4 37.1 478 62-618 67-547 (569)
22 KOG2081 Nuclear transport regu 99.8 8.5E-16 1.8E-20 151.1 40.9 461 34-553 2-540 (559)
23 KOG1242 Protein containing ada 99.8 2.4E-16 5.1E-21 157.3 35.5 479 104-668 28-542 (569)
24 COG5181 HSH155 U2 snRNP splice 99.8 1.8E-16 3.8E-21 155.7 28.3 598 16-680 169-819 (975)
25 KOG0213 Splicing factor 3b, su 99.8 2.6E-14 5.7E-19 143.5 40.2 527 45-670 508-1091(1172)
26 KOG0915 Uncharacterized conser 99.8 1.6E-14 3.4E-19 156.2 40.1 567 19-619 822-1453(1702)
27 KOG0212 Uncharacterized conser 99.8 2E-14 4.4E-19 140.4 36.5 410 97-573 4-425 (675)
28 PLN03200 cellulose synthase-in 99.7 2.5E-13 5.5E-18 156.2 46.3 573 26-650 200-861 (2102)
29 KOG0212 Uncharacterized conser 99.7 5.1E-14 1.1E-18 137.6 33.8 410 32-509 16-445 (675)
30 PLN03200 cellulose synthase-in 99.7 1.6E-13 3.4E-18 157.9 41.1 569 26-670 69-748 (2102)
31 PF01602 Adaptin_N: Adaptin N 99.7 2.1E-12 4.7E-17 139.4 44.4 509 13-647 5-522 (526)
32 KOG0915 Uncharacterized conser 99.7 5.4E-13 1.2E-17 144.6 38.0 486 62-616 829-1366(1702)
33 PF01602 Adaptin_N: Adaptin N 99.7 1.4E-12 3E-17 140.9 38.8 439 19-547 46-522 (526)
34 PTZ00429 beta-adaptin; Provisi 99.6 2.1E-11 4.6E-16 130.8 44.4 413 20-521 73-520 (746)
35 PF08506 Cse1: Cse1; InterPro 99.6 2.5E-14 5.4E-19 141.5 20.3 273 198-503 58-370 (370)
36 KOG0166 Karyopherin (importin) 99.6 2.5E-13 5.4E-18 135.3 27.1 357 96-552 69-439 (514)
37 PTZ00429 beta-adaptin; Provisi 99.6 2.8E-10 6.1E-15 122.3 51.8 435 15-551 35-473 (746)
38 COG5181 HSH155 U2 snRNP splice 99.6 1.1E-11 2.3E-16 122.6 32.3 529 46-671 314-897 (975)
39 KOG0166 Karyopherin (importin) 99.5 1.9E-12 4.2E-17 129.0 24.5 349 62-510 77-438 (514)
40 KOG0211 Protein phosphatase 2A 99.5 1.9E-10 4.1E-15 122.1 37.6 536 14-652 119-667 (759)
41 KOG2020 Nuclear transport rece 99.5 4.7E-10 1E-14 122.5 40.9 572 10-619 5-711 (1041)
42 KOG1991 Nuclear transport rece 99.5 1.1E-08 2.5E-13 107.7 48.7 539 8-618 32-694 (1010)
43 PRK13800 putative oxidoreducta 99.5 1.6E-11 3.4E-16 138.5 28.2 273 96-505 624-896 (897)
44 PRK09687 putative lyase; Provi 99.5 1.6E-11 3.4E-16 117.8 23.6 253 133-505 25-279 (280)
45 KOG0211 Protein phosphatase 2A 99.4 4.4E-10 9.6E-15 119.3 32.9 423 13-510 234-666 (759)
46 PF10508 Proteasom_PSMB: Prote 99.4 2.1E-09 4.5E-14 112.9 37.6 357 98-509 43-421 (503)
47 PRK13800 putative oxidoreducta 99.4 6.3E-11 1.4E-15 133.7 27.4 273 133-545 623-895 (897)
48 KOG1992 Nuclear export recepto 99.4 1.2E-08 2.5E-13 105.3 40.6 511 20-606 93-684 (960)
49 PRK09687 putative lyase; Provi 99.4 3.2E-10 6.9E-15 108.8 24.1 252 182-545 25-278 (280)
50 KOG1943 Beta-tubulin folding c 99.3 4E-08 8.7E-13 104.6 37.8 474 89-653 337-841 (1133)
51 COG5064 SRP1 Karyopherin (impo 99.3 3.3E-11 7.1E-16 111.0 12.9 350 133-550 73-444 (526)
52 KOG1248 Uncharacterized conser 99.2 1.2E-05 2.6E-10 87.4 54.0 228 406-660 668-910 (1176)
53 PF10508 Proteasom_PSMB: Prote 99.2 6.6E-08 1.4E-12 101.8 34.3 376 24-463 47-463 (503)
54 COG5064 SRP1 Karyopherin (impo 99.2 3.6E-09 7.8E-14 97.7 21.1 351 62-510 82-445 (526)
55 KOG1060 Vesicle coat complex A 99.2 5.5E-07 1.2E-11 92.8 37.0 392 98-553 40-462 (968)
56 KOG1059 Vesicle coat complex A 99.2 2.1E-07 4.5E-12 94.9 33.0 206 62-292 155-366 (877)
57 KOG1060 Vesicle coat complex A 99.2 2.6E-07 5.7E-12 95.0 33.9 345 101-541 151-525 (968)
58 KOG1240 Protein kinase contain 99.1 5.3E-09 1.2E-13 111.9 21.8 296 132-511 423-728 (1431)
59 PF12755 Vac14_Fab1_bd: Vacuol 99.1 7.1E-10 1.5E-14 86.4 11.0 93 408-506 2-94 (97)
60 KOG1059 Vesicle coat complex A 99.1 2.6E-06 5.6E-11 87.1 38.3 254 178-510 142-403 (877)
61 KOG1248 Uncharacterized conser 99.1 1.3E-06 2.9E-11 94.5 36.0 246 232-532 665-923 (1176)
62 KOG1062 Vesicle coat complex A 99.1 1.5E-06 3.3E-11 90.0 34.6 196 86-292 135-380 (866)
63 PF03810 IBN_N: Importin-beta 99.0 2.5E-09 5.4E-14 81.3 8.8 67 36-103 1-76 (77)
64 KOG1020 Sister chromatid cohes 99.0 1.7E-05 3.7E-10 88.0 40.9 430 125-654 810-1259(1692)
65 COG5240 SEC21 Vesicle coat com 98.9 9.2E-06 2E-10 81.0 33.0 350 90-525 19-421 (898)
66 PF12348 CLASP_N: CLASP N term 98.9 5.5E-08 1.2E-12 92.1 16.7 184 230-466 16-210 (228)
67 KOG1062 Vesicle coat complex A 98.9 2.7E-06 5.8E-11 88.3 28.7 293 134-511 110-417 (866)
68 KOG1061 Vesicle coat complex A 98.9 4.9E-06 1.1E-10 86.5 30.6 403 19-506 53-487 (734)
69 KOG1943 Beta-tubulin folding c 98.9 7.6E-05 1.7E-09 80.4 39.4 442 47-556 336-845 (1133)
70 PF12348 CLASP_N: CLASP N term 98.8 7.7E-08 1.7E-12 91.1 15.0 182 362-556 18-213 (228)
71 KOG4535 HEAT and armadillo rep 98.8 1.2E-05 2.7E-10 78.4 29.0 454 106-619 9-586 (728)
72 KOG1240 Protein kinase contain 98.8 7.5E-07 1.6E-11 96.0 21.6 285 109-466 439-729 (1431)
73 PF12460 MMS19_C: RNAPII trans 98.8 3.2E-05 6.8E-10 80.0 33.0 353 111-527 20-413 (415)
74 PF12755 Vac14_Fab1_bd: Vacuol 98.8 8.8E-08 1.9E-12 74.8 10.2 94 146-248 1-94 (97)
75 KOG2259 Uncharacterized conser 98.8 0.00035 7.7E-09 71.4 37.8 303 179-550 197-512 (823)
76 PF12460 MMS19_C: RNAPII trans 98.7 6.7E-05 1.5E-09 77.5 33.9 363 32-486 18-413 (415)
77 KOG4224 Armadillo repeat prote 98.7 3.8E-06 8.1E-11 79.0 21.6 344 98-510 90-448 (550)
78 COG5240 SEC21 Vesicle coat com 98.7 1E-05 2.2E-10 80.7 25.6 309 69-460 241-553 (898)
79 KOG2274 Predicted importin 9 [ 98.7 0.0011 2.3E-08 70.5 41.9 215 371-595 470-690 (1005)
80 KOG1020 Sister chromatid cohes 98.7 0.0018 3.8E-08 72.8 44.9 145 93-251 816-961 (1692)
81 KOG1061 Vesicle coat complex A 98.6 0.00033 7.2E-09 73.3 34.2 521 32-676 29-554 (734)
82 KOG4224 Armadillo repeat prote 98.6 6.1E-07 1.3E-11 84.2 13.0 377 110-551 64-448 (550)
83 KOG2259 Uncharacterized conser 98.6 0.00011 2.3E-09 75.0 28.5 297 222-597 199-514 (823)
84 PF13513 HEAT_EZ: HEAT-like re 98.6 1.2E-07 2.6E-12 66.3 5.2 55 406-460 1-55 (55)
85 cd00020 ARM Armadillo/beta-cat 98.5 4.8E-07 1E-11 75.9 8.0 111 389-507 7-119 (120)
86 KOG1078 Vesicle coat complex C 98.5 0.0009 2E-08 70.0 32.5 126 366-510 407-534 (865)
87 KOG1077 Vesicle coat complex A 98.4 0.0047 1E-07 64.0 36.4 336 93-531 111-455 (938)
88 KOG1077 Vesicle coat complex A 98.4 0.0033 7.2E-08 65.0 33.0 221 55-293 153-400 (938)
89 PF08389 Xpo1: Exportin 1-like 98.4 8.3E-07 1.8E-11 77.7 6.9 135 107-245 2-148 (148)
90 PF05804 KAP: Kinesin-associat 98.3 0.0053 1.2E-07 66.3 35.3 470 13-650 121-608 (708)
91 KOG2956 CLIP-associating prote 98.3 9E-05 1.9E-09 72.7 19.6 194 232-483 298-494 (516)
92 KOG1078 Vesicle coat complex C 98.3 0.0033 7.2E-08 65.9 31.6 97 101-210 29-130 (865)
93 PF08506 Cse1: Cse1; InterPro 98.3 0.00044 9.6E-09 69.2 24.7 216 194-457 110-370 (370)
94 KOG4535 HEAT and armadillo rep 98.3 0.0024 5.3E-08 63.0 28.3 505 62-616 7-623 (728)
95 KOG2956 CLIP-associating prote 98.3 9.3E-05 2E-09 72.6 18.7 189 62-265 298-493 (516)
96 PF12717 Cnd1: non-SMC mitotic 98.2 5.2E-05 1.1E-09 68.0 15.1 133 144-291 1-139 (178)
97 PF12717 Cnd1: non-SMC mitotic 98.2 0.00021 4.6E-09 64.1 18.7 133 106-250 1-139 (178)
98 KOG2022 Nuclear transport rece 98.2 0.014 3.1E-07 62.2 44.0 436 108-609 439-928 (982)
99 KOG4413 26S proteasome regulat 98.2 0.00092 2E-08 62.5 22.2 176 113-292 63-244 (524)
100 PF13513 HEAT_EZ: HEAT-like re 98.2 2.4E-06 5.1E-11 59.7 4.3 55 447-506 1-55 (55)
101 PF05004 IFRD: Interferon-rela 98.2 0.0011 2.4E-08 64.9 23.9 210 270-530 51-283 (309)
102 KOG1993 Nuclear transport rece 98.1 0.017 3.7E-07 60.9 39.3 215 64-292 410-645 (978)
103 PF13646 HEAT_2: HEAT repeats; 98.1 1.5E-05 3.4E-10 62.3 8.7 86 391-504 1-88 (88)
104 KOG1293 Proteins containing ar 98.1 0.017 3.6E-07 59.8 32.0 140 406-550 391-534 (678)
105 PF05918 API5: Apoptosis inhib 98.0 0.017 3.6E-07 60.2 30.7 187 62-270 33-227 (556)
106 KOG1820 Microtubule-associated 98.0 0.00071 1.5E-08 73.6 21.8 208 385-609 249-459 (815)
107 KOG4653 Uncharacterized conser 98.0 0.0012 2.6E-08 69.8 22.0 178 367-552 784-967 (982)
108 KOG1058 Vesicle coat complex C 98.0 0.023 4.9E-07 59.6 30.3 107 385-509 313-426 (948)
109 KOG1058 Vesicle coat complex C 98.0 0.032 7E-07 58.6 37.3 134 15-163 23-166 (948)
110 cd00020 ARM Armadillo/beta-cat 98.0 7.1E-05 1.5E-09 62.6 10.4 113 179-291 6-120 (120)
111 KOG0168 Putative ubiquitin fus 98.0 0.013 2.9E-07 62.1 28.3 171 132-317 168-347 (1051)
112 KOG4653 Uncharacterized conser 98.0 0.0017 3.6E-08 68.8 21.5 218 62-288 738-961 (982)
113 KOG0168 Putative ubiquitin fus 97.9 0.019 4.1E-07 61.1 28.6 187 51-252 170-366 (1051)
114 KOG0414 Chromosome condensatio 97.9 0.061 1.3E-06 59.6 35.7 176 382-574 911-1103(1251)
115 KOG2032 Uncharacterized conser 97.9 0.03 6.5E-07 56.0 31.0 117 176-292 254-372 (533)
116 TIGR02270 conserved hypothetic 97.9 0.0038 8.2E-08 63.5 22.8 209 181-507 87-295 (410)
117 PF05804 KAP: Kinesin-associat 97.9 0.0038 8.3E-08 67.4 23.8 332 96-510 293-651 (708)
118 KOG0392 SNF2 family DNA-depend 97.9 0.082 1.8E-06 59.0 35.5 159 62-228 88-256 (1549)
119 COG5096 Vesicle coat complex, 97.9 0.067 1.4E-06 57.8 37.6 165 27-210 31-196 (757)
120 COG5096 Vesicle coat complex, 97.8 0.07 1.5E-06 57.6 35.0 167 102-291 28-195 (757)
121 KOG2032 Uncharacterized conser 97.8 0.0011 2.4E-08 65.8 16.3 156 395-555 220-377 (533)
122 KOG1820 Microtubule-associated 97.8 0.0011 2.4E-08 72.1 17.9 192 221-466 253-447 (815)
123 KOG2021 Nuclear mRNA export fa 97.8 0.074 1.6E-06 56.0 48.5 468 47-573 188-786 (980)
124 PF04826 Arm_2: Armadillo-like 97.8 0.0039 8.4E-08 58.8 18.9 185 47-250 11-205 (254)
125 PF05004 IFRD: Interferon-rela 97.8 0.022 4.8E-07 55.9 24.8 194 228-465 50-260 (309)
126 COG1413 FOG: HEAT repeat [Ener 97.7 0.0085 1.8E-07 60.5 22.8 110 366-508 195-304 (335)
127 TIGR02270 conserved hypothetic 97.7 0.013 2.8E-07 59.6 23.6 241 94-462 55-296 (410)
128 KOG1967 DNA repair/transcripti 97.7 0.00047 1E-08 73.3 13.1 149 130-285 866-1018(1030)
129 PF14500 MMS19_N: Dos2-interac 97.7 0.003 6.4E-08 60.1 17.5 241 393-666 3-255 (262)
130 KOG1410 Nuclear transport rece 97.7 0.089 1.9E-06 54.6 46.8 145 14-162 4-159 (1082)
131 PF11865 DUF3385: Domain of un 97.7 0.00056 1.2E-08 59.6 11.5 147 386-551 7-159 (160)
132 PF14500 MMS19_N: Dos2-interac 97.7 0.011 2.4E-07 56.2 21.1 249 135-440 3-257 (262)
133 PF13646 HEAT_2: HEAT repeats; 97.7 0.00017 3.6E-09 56.4 7.3 86 435-545 1-88 (88)
134 PLN03076 ARF guanine nucleotid 97.7 0.094 2E-06 62.9 32.2 337 184-574 1141-1513(1780)
135 KOG1967 DNA repair/transcripti 97.7 0.0015 3.3E-08 69.6 15.7 144 93-244 867-1018(1030)
136 KOG4413 26S proteasome regulat 97.7 0.056 1.2E-06 51.0 26.4 300 144-510 53-379 (524)
137 KOG0891 DNA-dependent protein 97.6 0.081 1.8E-06 64.6 31.5 246 32-292 460-720 (2341)
138 COG1413 FOG: HEAT repeat [Ener 97.6 0.055 1.2E-06 54.6 26.8 186 48-290 43-241 (335)
139 KOG1525 Sister chromatid cohes 97.6 0.23 5E-06 57.3 38.4 330 62-463 61-406 (1266)
140 KOG1293 Proteins containing ar 97.6 0.12 2.6E-06 53.8 32.9 432 62-554 20-495 (678)
141 PLN03076 ARF guanine nucleotid 97.6 0.051 1.1E-06 65.1 29.0 343 128-529 1134-1511(1780)
142 COG5656 SXM1 Importin, protein 97.6 0.13 2.9E-06 54.2 39.0 334 178-565 406-772 (970)
143 KOG1525 Sister chromatid cohes 97.6 0.17 3.6E-06 58.4 31.8 342 93-509 48-406 (1266)
144 PF03378 CAS_CSE1: CAS/CSE pro 97.6 0.022 4.9E-07 58.5 23.0 305 176-532 22-351 (435)
145 PF05918 API5: Apoptosis inhib 97.6 0.062 1.3E-06 56.1 26.2 282 12-315 20-320 (556)
146 PF10274 ParcG: Parkin co-regu 97.6 0.0012 2.6E-08 57.6 11.6 91 477-569 36-130 (183)
147 PF03378 CAS_CSE1: CAS/CSE pro 97.5 0.007 1.5E-07 62.1 18.6 209 405-618 43-254 (435)
148 PF08167 RIX1: rRNA processing 97.5 0.0042 9.1E-08 54.7 14.6 134 429-570 21-162 (165)
149 PF02985 HEAT: HEAT repeat; I 97.5 9.7E-05 2.1E-09 44.0 3.0 30 434-463 1-30 (31)
150 KOG2025 Chromosome condensatio 97.5 0.019 4.1E-07 59.8 20.4 252 14-289 7-292 (892)
151 PF13001 Ecm29: Proteasome sta 97.5 0.21 4.5E-06 53.0 32.0 82 17-104 25-113 (501)
152 PF04826 Arm_2: Armadillo-like 97.4 0.021 4.5E-07 54.0 19.0 212 10-241 10-253 (254)
153 PF08569 Mo25: Mo25-like; Int 97.4 0.16 3.5E-06 50.1 25.9 193 96-301 79-293 (335)
154 PF08167 RIX1: rRNA processing 97.4 0.0057 1.2E-07 53.9 13.9 139 386-529 22-164 (165)
155 KOG0414 Chromosome condensatio 97.3 0.0036 7.9E-08 68.7 13.1 178 112-316 896-1082(1251)
156 KOG4524 Uncharacterized conser 97.2 0.055 1.2E-06 58.7 20.7 98 386-490 800-900 (1014)
157 KOG1517 Guanine nucleotide bin 97.2 0.02 4.2E-07 62.3 17.3 101 406-510 571-673 (1387)
158 KOG0891 DNA-dependent protein 97.2 0.42 9.2E-06 58.7 29.9 441 92-615 480-941 (2341)
159 KOG2062 26S proteasome regulat 97.2 0.44 9.4E-06 50.5 26.0 119 398-538 564-683 (929)
160 KOG2062 26S proteasome regulat 97.2 0.017 3.8E-07 60.3 16.0 173 45-245 516-689 (929)
161 KOG0413 Uncharacterized conser 97.2 0.51 1.1E-05 51.4 26.7 108 92-208 575-684 (1529)
162 KOG2933 Uncharacterized conser 97.1 0.012 2.6E-07 55.1 13.4 145 394-552 93-237 (334)
163 KOG2025 Chromosome condensatio 97.1 0.073 1.6E-06 55.7 19.9 123 32-156 62-189 (892)
164 KOG2549 Transcription initiati 97.1 0.043 9.3E-07 55.8 17.8 178 221-442 207-392 (576)
165 PF10274 ParcG: Parkin co-regu 97.1 0.0077 1.7E-07 52.7 11.0 120 432-555 37-170 (183)
166 PF02985 HEAT: HEAT repeat; I 97.0 0.0013 2.8E-08 39.1 4.0 31 390-423 1-31 (31)
167 PF12719 Cnd3: Nuclear condens 97.0 0.062 1.3E-06 52.9 18.1 152 129-292 24-186 (298)
168 PF13251 DUF4042: Domain of un 97.0 0.017 3.8E-07 51.0 12.2 146 108-253 1-177 (182)
169 PF13251 DUF4042: Domain of un 97.0 0.0088 1.9E-07 52.9 10.3 145 407-551 1-176 (182)
170 PF12719 Cnd3: Nuclear condens 96.9 0.22 4.8E-06 49.0 20.7 117 92-209 26-143 (298)
171 KOG1243 Protein kinase [Genera 96.9 0.026 5.6E-07 59.1 14.3 191 259-511 327-518 (690)
172 KOG2160 Armadillo/beta-catenin 96.8 0.17 3.7E-06 49.0 18.1 143 405-552 96-243 (342)
173 cd08050 TAF6 TATA Binding Prot 96.7 0.041 8.8E-07 55.0 14.5 156 222-421 179-340 (343)
174 KOG2160 Armadillo/beta-catenin 96.7 0.26 5.5E-06 47.9 19.0 143 142-292 94-241 (342)
175 PF01603 B56: Protein phosphat 96.7 0.3 6.5E-06 50.3 20.9 233 17-258 135-378 (409)
176 KOG1517 Guanine nucleotide bin 96.7 0.1 2.2E-06 57.1 17.4 207 32-256 486-738 (1387)
177 COG5218 YCG1 Chromosome conden 96.7 0.28 6E-06 50.4 19.2 177 13-204 9-194 (885)
178 PF11865 DUF3385: Domain of un 96.6 0.023 5.1E-07 49.6 10.5 129 431-576 8-141 (160)
179 KOG1949 Uncharacterized conser 96.6 0.14 3.1E-06 53.5 17.2 202 81-290 113-330 (1005)
180 PF10521 DUF2454: Protein of u 96.6 0.11 2.4E-06 50.5 16.1 168 405-574 88-276 (282)
181 KOG2933 Uncharacterized conser 96.6 0.067 1.5E-06 50.4 13.5 145 130-289 87-232 (334)
182 KOG0392 SNF2 family DNA-depend 96.5 0.045 9.7E-07 60.9 13.2 176 367-552 749-928 (1549)
183 PF08064 UME: UME (NUC010) dom 96.4 0.065 1.4E-06 43.1 11.0 97 215-314 5-105 (107)
184 COG5218 YCG1 Chromosome conden 96.4 1.3 2.8E-05 45.7 22.0 171 105-285 23-193 (885)
185 PF01603 B56: Protein phosphat 96.4 1.3 2.9E-05 45.6 22.9 258 191-509 101-371 (409)
186 KOG1243 Protein kinase [Genera 96.3 0.13 2.9E-06 54.1 15.2 188 221-465 330-518 (690)
187 cd00256 VATPase_H VATPase_H, r 96.3 1.5 3.3E-05 44.8 27.4 191 47-251 52-259 (429)
188 PF08569 Mo25: Mo25-like; Int 96.3 0.81 1.8E-05 45.3 19.9 185 62-252 87-285 (335)
189 KOG2137 Protein kinase [Signal 96.3 0.7 1.5E-05 49.1 20.2 250 13-289 237-494 (700)
190 PF10521 DUF2454: Protein of u 96.2 0.1 2.3E-06 50.7 13.1 148 126-275 114-278 (282)
191 COG5095 TAF6 Transcription ini 96.2 0.092 2E-06 48.9 11.7 145 231-423 208-361 (450)
192 KOG1949 Uncharacterized conser 96.1 0.38 8.3E-06 50.5 16.9 143 52-207 178-329 (1005)
193 KOG2122 Beta-catenin-binding p 96.1 3.2 6.9E-05 48.0 24.6 70 389-462 530-601 (2195)
194 smart00802 UME Domain in UVSB 96.0 0.12 2.7E-06 41.2 10.5 97 215-314 5-105 (107)
195 PF05536 Neurochondrin: Neuroc 96.0 0.88 1.9E-05 48.7 20.0 245 390-655 6-267 (543)
196 KOG4500 Rho/Rac GTPase guanine 96.0 2 4.3E-05 42.8 21.7 111 388-508 314-431 (604)
197 KOG0567 HEAT repeat-containing 95.8 1.6 3.4E-05 40.6 18.7 69 382-461 211-279 (289)
198 PF05536 Neurochondrin: Neuroc 95.8 3.4 7.4E-05 44.3 35.2 232 47-292 4-262 (543)
199 PF10363 DUF2435: Protein of u 95.8 0.15 3.3E-06 39.5 9.8 84 391-490 5-88 (92)
200 cd00256 VATPase_H VATPase_H, r 95.7 2.8 6.2E-05 42.9 28.0 68 434-507 354-424 (429)
201 COG5116 RPN2 26S proteasome re 95.7 0.075 1.6E-06 54.1 9.9 81 446-537 599-679 (926)
202 COG5116 RPN2 26S proteasome re 95.7 0.31 6.6E-06 49.9 14.0 123 94-235 552-676 (926)
203 KOG1851 Uncharacterized conser 95.6 6.3 0.00014 46.1 32.4 150 368-527 1504-1657(1710)
204 PF13001 Ecm29: Proteasome sta 95.6 0.95 2.1E-05 48.2 18.2 211 62-289 248-486 (501)
205 PF12054 DUF3535: Domain of un 95.6 0.54 1.2E-05 48.8 15.9 59 363-424 99-158 (441)
206 PF12530 DUF3730: Protein of u 95.5 2.2 4.8E-05 40.2 19.7 188 27-235 13-217 (234)
207 COG5098 Chromosome condensatio 95.5 0.21 4.6E-06 52.2 12.4 128 371-508 282-415 (1128)
208 KOG1822 Uncharacterized conser 95.5 7.9 0.00017 46.3 39.4 237 17-259 878-1136(2067)
209 PF04510 DUF577: Family of unk 95.4 1.3 2.9E-05 38.2 14.8 147 93-251 3-165 (174)
210 PF08064 UME: UME (NUC010) dom 95.4 0.18 3.8E-06 40.6 9.3 96 474-572 6-105 (107)
211 PF11864 DUF3384: Domain of un 95.3 4.5 9.8E-05 42.7 37.1 292 108-461 5-329 (464)
212 KOG0803 Predicted E3 ubiquitin 95.3 1.4 3.1E-05 51.2 19.5 237 179-446 40-289 (1312)
213 KOG2149 Uncharacterized conser 95.3 0.51 1.1E-05 46.6 13.7 134 392-532 61-194 (393)
214 KOG2149 Uncharacterized conser 95.3 0.38 8.3E-06 47.4 12.9 111 182-292 60-171 (393)
215 smart00802 UME Domain in UVSB 95.3 0.2 4.3E-06 40.0 9.2 96 474-572 6-105 (107)
216 KOG0889 Histone acetyltransfer 95.3 13 0.00028 47.6 34.2 162 131-292 984-1156(3550)
217 PF10363 DUF2435: Protein of u 95.2 0.2 4.3E-06 38.8 8.7 76 132-216 4-79 (92)
218 KOG3961 Uncharacterized conser 95.1 0.11 2.3E-06 45.9 7.7 95 477-574 112-209 (262)
219 PF08623 TIP120: TATA-binding 95.0 0.28 6.2E-06 42.7 10.1 118 427-552 3-150 (169)
220 KOG2137 Protein kinase [Signal 95.0 5.3 0.00012 42.8 21.0 127 368-507 367-495 (700)
221 KOG0946 ER-Golgi vesicle-tethe 95.0 6.4 0.00014 42.6 34.6 186 105-292 35-242 (970)
222 PF01347 Vitellogenin_N: Lipop 95.0 1.7 3.6E-05 48.2 18.8 144 130-288 430-586 (618)
223 cd08050 TAF6 TATA Binding Prot 94.7 0.48 1E-05 47.4 12.4 115 387-506 208-338 (343)
224 PF04118 Dopey_N: Dopey, N-ter 94.6 4.9 0.00011 39.3 23.2 165 106-292 2-168 (307)
225 KOG0567 HEAT repeat-containing 94.6 3.9 8.5E-05 38.1 21.7 78 406-508 170-249 (289)
226 PF08767 CRM1_C: CRM1 C termin 94.6 2.8 6E-05 41.6 17.2 163 366-532 42-226 (319)
227 PF01347 Vitellogenin_N: Lipop 94.6 8.7 0.00019 42.6 23.1 119 105-246 447-585 (618)
228 COG5098 Chromosome condensatio 94.4 5.6 0.00012 42.3 19.0 116 133-253 301-418 (1128)
229 PF03224 V-ATPase_H_N: V-ATPas 94.3 3.2 6.9E-05 41.3 17.0 196 47-255 54-274 (312)
230 PF03224 V-ATPase_H_N: V-ATPas 94.3 2.6 5.6E-05 41.9 16.4 181 394-587 110-306 (312)
231 smart00638 LPD_N Lipoprotein N 94.2 3.9 8.5E-05 44.7 19.2 139 46-206 391-542 (574)
232 KOG4199 Uncharacterized conser 94.2 5.7 0.00012 38.4 30.0 310 127-506 104-442 (461)
233 PF07571 DUF1546: Protein of u 94.2 0.17 3.8E-06 39.2 6.2 59 363-422 18-79 (92)
234 COG5095 TAF6 Transcription ini 94.1 2.1 4.5E-05 40.3 13.8 141 387-532 228-384 (450)
235 KOG0946 ER-Golgi vesicle-tethe 94.0 11 0.00024 40.9 40.4 171 86-266 75-262 (970)
236 PF08623 TIP120: TATA-binding 93.9 0.88 1.9E-05 39.7 10.5 73 146-229 42-114 (169)
237 KOG2549 Transcription initiati 93.8 2.8 6.2E-05 43.2 15.2 140 387-531 237-394 (576)
238 PF08767 CRM1_C: CRM1 C termin 93.8 7.9 0.00017 38.4 19.6 122 387-508 115-244 (319)
239 KOG1048 Neural adherens juncti 93.7 11 0.00024 41.0 20.0 98 406-509 533-642 (717)
240 KOG2759 Vacuolar H+-ATPase V1 93.7 8.5 0.00018 38.5 26.8 197 47-253 64-274 (442)
241 PF12231 Rif1_N: Rap1-interact 93.6 9.7 0.00021 38.8 28.3 256 193-507 59-351 (372)
242 PF12830 Nipped-B_C: Sister ch 93.2 4.8 0.0001 36.3 14.7 76 130-217 7-82 (187)
243 PF12830 Nipped-B_C: Sister ch 93.2 2.9 6.2E-05 37.8 13.2 85 178-266 6-90 (187)
244 PF08389 Xpo1: Exportin 1-like 92.6 0.81 1.8E-05 39.5 8.7 124 367-503 4-148 (148)
245 PF11698 V-ATPase_H_C: V-ATPas 92.4 0.75 1.6E-05 37.3 7.3 70 131-209 43-115 (119)
246 PF00514 Arm: Armadillo/beta-c 92.3 0.25 5.4E-06 31.5 3.8 28 434-461 13-40 (41)
247 KOG2081 Nuclear transport regu 92.2 17 0.00036 38.0 33.8 95 363-465 401-498 (559)
248 KOG2973 Uncharacterized conser 92.1 3.7 8.1E-05 39.1 12.4 105 393-508 7-111 (353)
249 PF04118 Dopey_N: Dopey, N-ter 91.9 4.3 9.4E-05 39.7 13.4 145 406-554 25-172 (307)
250 PF14664 RICTOR_N: Rapamycin-i 91.6 17 0.00037 36.9 27.3 160 126-301 20-186 (371)
251 PF11707 Npa1: Ribosome 60S bi 91.5 11 0.00025 37.6 16.4 176 107-292 40-238 (330)
252 KOG2256 Predicted protein invo 91.5 5.8 0.00013 42.0 14.2 200 447-669 256-476 (661)
253 KOG2759 Vacuolar H+-ATPase V1 91.4 17 0.00037 36.5 27.6 69 433-507 366-437 (442)
254 smart00638 LPD_N Lipoprotein N 91.4 25 0.00055 38.5 23.9 119 105-246 409-541 (574)
255 PF00514 Arm: Armadillo/beta-c 91.2 0.37 8.1E-06 30.7 3.7 30 478-507 11-40 (41)
256 PF14631 FancD2: Fanconi anaem 91.1 43 0.00093 40.6 27.4 118 425-551 427-544 (1426)
257 PF12074 DUF3554: Domain of un 91.0 19 0.00041 36.3 19.2 217 32-257 3-242 (339)
258 cd03568 VHS_STAM VHS domain fa 90.6 7.7 0.00017 33.2 12.1 76 388-466 36-114 (144)
259 PF14664 RICTOR_N: Rapamycin-i 90.5 22 0.00047 36.1 19.1 220 23-253 33-272 (371)
260 PF12231 Rif1_N: Rap1-interact 90.5 22 0.00048 36.2 29.6 169 406-574 148-329 (372)
261 cd03561 VHS VHS domain family; 90.5 3.4 7.3E-05 34.9 9.9 98 104-212 15-115 (133)
262 PF11698 V-ATPase_H_C: V-ATPas 90.2 1.4 3E-05 35.8 6.8 69 434-508 44-115 (119)
263 KOG1822 Uncharacterized conser 90.0 54 0.0012 39.9 37.9 187 98-292 56-249 (2067)
264 PF09324 DUF1981: Domain of un 89.8 2.1 4.5E-05 32.8 7.3 66 222-287 18-84 (86)
265 PF08713 DNA_alkylation: DNA a 89.8 10 0.00023 35.0 13.7 158 32-219 35-194 (213)
266 KOG0803 Predicted E3 ubiquitin 89.6 52 0.0011 39.1 21.9 90 224-315 44-134 (1312)
267 PF08713 DNA_alkylation: DNA a 89.5 6.4 0.00014 36.5 12.0 69 388-465 119-187 (213)
268 cd03568 VHS_STAM VHS domain fa 89.1 3 6.5E-05 35.6 8.5 98 104-212 15-113 (144)
269 PF12783 Sec7_N: Guanine nucle 88.9 7.2 0.00016 34.5 11.3 108 144-251 35-147 (168)
270 PF09324 DUF1981: Domain of un 88.7 2.9 6.4E-05 32.0 7.4 70 177-246 14-84 (86)
271 cd03567 VHS_GGA VHS domain fam 88.5 14 0.00031 31.3 12.2 76 478-553 37-120 (139)
272 KOG0889 Histone acetyltransfer 88.4 95 0.0021 40.6 41.6 160 389-555 984-1161(3550)
273 KOG3961 Uncharacterized conser 87.6 2.7 5.8E-05 37.5 7.3 89 564-668 115-206 (262)
274 KOG1837 Uncharacterized conser 87.6 70 0.0015 38.2 30.5 102 535-659 1519-1621(1621)
275 cd03561 VHS VHS domain family; 87.5 7.8 0.00017 32.7 10.0 88 432-523 36-129 (133)
276 KOG0413 Uncharacterized conser 87.1 57 0.0012 36.7 25.3 110 389-509 576-686 (1529)
277 PF14631 FancD2: Fanconi anaem 86.8 74 0.0016 38.7 20.7 111 126-249 430-541 (1426)
278 PF12765 Cohesin_HEAT: HEAT re 86.3 1.2 2.6E-05 28.6 3.4 41 415-457 2-42 (42)
279 PF11701 UNC45-central: Myosin 85.9 5.7 0.00012 34.7 8.6 141 98-247 8-156 (157)
280 cd03569 VHS_Hrs_Vps27p VHS dom 85.4 15 0.00032 31.4 10.6 78 477-554 39-119 (142)
281 KOG2011 Sister chromatid cohes 85.4 77 0.0017 36.5 18.9 142 130-288 281-432 (1048)
282 KOG1222 Kinesin associated pro 85.1 49 0.0011 33.9 25.0 117 514-650 502-622 (791)
283 PF12783 Sec7_N: Guanine nucle 84.9 20 0.00044 31.6 11.9 100 193-292 35-147 (168)
284 PF00790 VHS: VHS domain; Int 84.9 14 0.00031 31.4 10.5 77 387-466 40-122 (140)
285 KOG1851 Uncharacterized conser 84.7 98 0.0021 37.1 31.0 139 407-555 1502-1644(1710)
286 PF12530 DUF3730: Protein of u 84.6 36 0.00078 32.0 21.2 144 366-523 16-166 (234)
287 PF04388 Hamartin: Hamartin pr 83.7 59 0.0013 36.1 17.0 152 97-271 8-161 (668)
288 cd03567 VHS_GGA VHS domain fam 83.6 4.9 0.00011 34.1 6.8 99 103-212 15-119 (139)
289 PF11701 UNC45-central: Myosin 83.5 3.1 6.8E-05 36.3 5.9 131 366-505 20-156 (157)
290 PF11864 DUF3384: Domain of un 83.5 65 0.0014 34.1 39.1 130 369-512 195-335 (464)
291 KOG0929 Guanine nucleotide exc 83.1 1.2E+02 0.0025 36.7 19.7 159 104-270 1048-1224(1514)
292 PF12765 Cohesin_HEAT: HEAT re 82.9 2.6 5.7E-05 27.0 3.9 26 179-204 17-42 (42)
293 COG5231 VMA13 Vacuolar H+-ATPa 82.8 48 0.001 32.1 16.9 70 434-508 357-428 (432)
294 KOG1048 Neural adherens juncti 82.7 80 0.0017 34.7 20.2 351 182-575 235-618 (717)
295 PF11919 DUF3437: Domain of un 82.7 3.6 7.8E-05 31.7 5.2 57 406-463 3-59 (90)
296 KOG2973 Uncharacterized conser 82.7 6.4 0.00014 37.6 7.8 68 436-510 6-73 (353)
297 PF12397 U3snoRNP10: U3 small 82.1 8.1 0.00018 31.9 7.7 74 429-510 2-76 (121)
298 cd03569 VHS_Hrs_Vps27p VHS dom 82.0 24 0.00052 30.1 10.6 78 432-513 40-119 (142)
299 PF12054 DUF3535: Domain of un 81.8 72 0.0016 33.4 16.0 98 406-510 101-199 (441)
300 PF11935 DUF3453: Domain of un 81.5 45 0.00098 31.5 13.3 124 442-571 2-161 (239)
301 PF04078 Rcd1: Cell differenti 81.5 49 0.0011 31.3 13.2 100 145-251 110-219 (262)
302 PF14668 RICTOR_V: Rapamycin-i 81.5 3.6 7.8E-05 30.2 4.6 56 408-465 3-61 (73)
303 KOG1848 Uncharacterized conser 81.4 1.2E+02 0.0027 35.8 24.0 165 105-292 854-1027(1610)
304 PF00790 VHS: VHS domain; Int 81.4 33 0.00071 29.2 13.3 81 474-554 37-123 (140)
305 smart00288 VHS Domain present 80.9 33 0.0007 28.9 11.6 78 476-553 34-115 (133)
306 PF12333 Ipi1_N: Rix1 complex 80.7 5.9 0.00013 31.5 6.0 63 425-491 3-65 (102)
307 KOG3687 Tuberin - Rap/ran-GTPa 79.2 1.2E+02 0.0026 34.4 20.9 77 444-528 441-522 (1697)
308 smart00185 ARM Armadillo/beta- 79.2 2.7 5.9E-05 26.4 3.1 28 434-461 13-40 (41)
309 PF12333 Ipi1_N: Rix1 complex 79.1 7.1 0.00015 31.1 6.0 61 472-532 4-65 (102)
310 PF12074 DUF3554: Domain of un 78.5 78 0.0017 31.8 18.7 193 90-292 19-236 (339)
311 PF12397 U3snoRNP10: U3 small 78.1 37 0.0008 27.9 10.9 72 385-463 2-75 (121)
312 smart00288 VHS Domain present 78.1 40 0.00087 28.3 11.9 77 387-466 35-115 (133)
313 PF12612 TFCD_C: Tubulin foldi 77.9 45 0.00098 30.3 11.8 132 407-550 22-159 (193)
314 PF07571 DUF1546: Protein of u 77.2 12 0.00027 29.0 6.7 58 444-506 17-76 (92)
315 smart00185 ARM Armadillo/beta- 77.1 3.8 8.3E-05 25.7 3.4 28 480-507 13-40 (41)
316 KOG4524 Uncharacterized conser 76.8 1.4E+02 0.003 33.9 30.4 75 179-253 277-351 (1014)
317 KOG2199 Signal transducing ada 76.5 38 0.00083 33.6 11.0 79 385-466 41-122 (462)
318 cd00197 VHS_ENTH_ANTH VHS, ENT 76.5 16 0.00034 29.8 7.6 77 126-208 32-114 (115)
319 cd03572 ENTH_epsin_related ENT 76.0 21 0.00045 29.4 7.9 89 116-209 21-119 (122)
320 KOG2038 CAATT-binding transcri 75.8 1.3E+02 0.0029 33.1 28.2 71 219-293 302-373 (988)
321 cd03565 VHS_Tom1 VHS domain fa 75.7 45 0.00097 28.4 10.3 78 477-554 36-120 (141)
322 PF14225 MOR2-PAG1_C: Cell mor 74.8 82 0.0018 30.2 20.0 173 127-315 60-238 (262)
323 PF04510 DUF577: Family of unk 74.6 59 0.0013 28.5 11.9 147 389-549 3-164 (174)
324 PF14868 DUF4487: Domain of un 74.6 1.3E+02 0.0028 32.4 23.4 82 381-465 471-555 (559)
325 PF03130 HEAT_PBS: PBS lyase H 73.8 5.1 0.00011 22.7 2.8 14 449-462 1-14 (27)
326 PF08146 BP28CT: BP28CT (NUC21 73.7 60 0.0013 28.1 11.9 76 539-620 40-122 (153)
327 PF04388 Hamartin: Hamartin pr 73.5 94 0.002 34.6 14.7 78 235-314 82-161 (668)
328 cd03572 ENTH_epsin_related ENT 72.5 53 0.0012 27.1 10.4 45 475-519 34-78 (122)
329 KOG0929 Guanine nucleotide exc 72.5 2.3E+02 0.005 34.4 18.1 236 47-292 1035-1299(1514)
330 KOG2199 Signal transducing ada 72.5 35 0.00075 33.9 9.6 110 406-526 26-137 (462)
331 PF12612 TFCD_C: Tubulin foldi 70.1 49 0.0011 30.0 10.0 154 430-595 4-159 (193)
332 PF14225 MOR2-PAG1_C: Cell mor 69.7 1.1E+02 0.0023 29.4 19.7 145 390-553 112-258 (262)
333 PF03542 Tuberin: Tuberin; In 69.3 1.3E+02 0.0029 30.3 16.2 93 447-549 211-303 (356)
334 PF10350 DUF2428: Putative dea 68.9 95 0.0021 29.7 12.1 156 364-527 60-247 (255)
335 KOG4500 Rho/Rac GTPase guanine 68.7 1.4E+02 0.0031 30.4 29.5 72 179-250 314-390 (604)
336 PF03542 Tuberin: Tuberin; In 68.5 1.4E+02 0.003 30.2 16.4 118 193-315 210-329 (356)
337 KOG2122 Beta-catenin-binding p 67.7 2.8E+02 0.0061 33.5 23.0 102 406-510 452-561 (2195)
338 smart00567 EZ_HEAT E-Z type HE 67.6 8.2 0.00018 22.3 2.9 16 406-421 1-16 (30)
339 COG5369 Uncharacterized conser 66.4 11 0.00024 38.9 5.2 136 408-549 405-545 (743)
340 cd06561 AlkD_like A new struct 64.4 34 0.00073 31.1 7.9 66 392-465 108-173 (197)
341 KOG4199 Uncharacterized conser 63.7 1.6E+02 0.0034 29.1 24.1 134 391-533 285-428 (461)
342 COG5537 IRR1 Cohesin [Cell div 63.5 2.1E+02 0.0046 30.6 14.5 104 186-291 281-386 (740)
343 KOG1789 Endocytosis protein RM 63.1 2.9E+02 0.0063 32.0 23.9 136 147-292 1741-1884(2235)
344 PF11841 DUF3361: Domain of un 62.7 99 0.0021 26.9 9.5 124 12-137 11-146 (160)
345 PF01465 GRIP: GRIP domain; I 61.2 19 0.00042 23.6 4.0 36 89-124 3-38 (46)
346 COG5537 IRR1 Cohesin [Cell div 61.2 2.4E+02 0.0051 30.3 16.1 85 228-314 282-366 (740)
347 COG5234 CIN1 Beta-tubulin fold 60.2 2.6E+02 0.0057 30.6 17.0 178 105-289 208-414 (993)
348 PF07539 DRIM: Down-regulated 60.2 87 0.0019 26.7 8.8 30 179-208 16-45 (141)
349 KOG1087 Cytosolic sorting prot 60.2 88 0.0019 32.7 10.4 102 101-213 13-116 (470)
350 PF11935 DUF3453: Domain of un 59.5 1.6E+02 0.0035 27.8 17.8 87 181-267 44-162 (239)
351 PF12243 CTK3: CTD kinase subu 58.9 1.1E+02 0.0024 25.9 11.0 101 435-549 10-119 (139)
352 cd00197 VHS_ENTH_ANTH VHS, ENT 57.9 1E+02 0.0022 25.0 10.4 73 385-460 33-113 (115)
353 cd07064 AlkD_like_1 A new stru 57.9 1.6E+02 0.0034 27.2 17.8 181 10-219 3-189 (208)
354 PF04078 Rcd1: Cell differenti 57.5 1.7E+02 0.0038 27.7 10.9 104 193-297 109-224 (262)
355 KOG2011 Sister chromatid cohes 57.2 3.7E+02 0.0081 31.4 22.0 92 218-311 279-375 (1048)
356 COG4912 Predicted DNA alkylati 56.9 48 0.001 30.3 7.0 82 375-464 103-185 (222)
357 cd03565 VHS_Tom1 VHS domain fa 56.3 1.3E+02 0.0028 25.7 12.0 76 388-466 37-119 (141)
358 KOG2256 Predicted protein invo 56.0 3E+02 0.0065 29.9 19.0 178 178-399 280-474 (661)
359 PF08161 NUC173: NUC173 domain 55.6 1.6E+02 0.0036 26.8 18.5 58 235-292 14-71 (198)
360 KOG3678 SARM protein (with ste 55.4 2.5E+02 0.0055 28.9 16.3 152 131-292 180-337 (832)
361 KOG1877 Putative transmembrane 54.5 3.6E+02 0.0079 30.4 16.0 283 174-489 50-349 (819)
362 smart00582 RPR domain present 53.8 89 0.0019 25.6 7.9 98 99-209 6-107 (121)
363 KOG3036 Protein involved in ce 53.8 2E+02 0.0042 27.1 14.2 187 15-209 26-247 (293)
364 KOG1848 Uncharacterized conser 53.5 4.7E+02 0.01 31.4 19.8 227 16-249 843-1131(1610)
365 PF07539 DRIM: Down-regulated 52.0 97 0.0021 26.4 7.8 81 478-571 16-96 (141)
366 KOG2213 Apoptosis inhibitor 5/ 51.7 2.7E+02 0.0059 28.1 21.6 267 143-465 36-317 (460)
367 PF14961 BROMI: Broad-minded p 50.9 2.1E+02 0.0045 33.6 12.0 71 96-166 164-237 (1296)
368 PF14961 BROMI: Broad-minded p 50.7 4.9E+02 0.011 30.8 15.2 133 131-272 161-315 (1296)
369 PF13981 SopA: SopA-like centr 50.3 1.6E+02 0.0034 24.9 8.6 58 235-292 67-124 (135)
370 COG5369 Uncharacterized conser 50.3 1.8E+02 0.0039 30.7 10.4 75 130-210 472-546 (743)
371 smart00755 Grip golgin-97, Ran 50.1 35 0.00075 22.4 3.7 34 90-124 3-36 (46)
372 PF14668 RICTOR_V: Rapamycin-i 50.0 68 0.0015 23.6 5.7 53 450-509 4-59 (73)
373 PF06685 DUF1186: Protein of u 49.4 2.4E+02 0.0052 26.8 14.1 41 225-265 115-160 (249)
374 PF00613 PI3Ka: Phosphoinositi 45.8 1.3E+02 0.0027 27.1 8.0 115 8-143 4-123 (184)
375 PF10193 Telomere_reg-2: Telom 45.6 1.1E+02 0.0024 24.9 6.9 80 182-261 5-90 (114)
376 PF10193 Telomere_reg-2: Telom 42.8 71 0.0015 26.0 5.5 61 492-552 18-82 (114)
377 PF08161 NUC173: NUC173 domain 42.8 2.6E+02 0.0057 25.4 12.7 56 411-466 19-74 (198)
378 KOG2085 Serine/threonine prote 42.2 3.9E+02 0.0085 27.3 13.2 82 177-258 338-422 (457)
379 KOG2005 26S proteasome regulat 41.3 5.2E+02 0.011 28.4 16.3 77 375-463 629-705 (878)
380 KOG1789 Endocytosis protein RM 41.0 6.6E+02 0.014 29.5 17.7 59 21-82 1818-1885(2235)
381 PF08620 RPAP1_C: RPAP1-like, 39.5 53 0.0011 24.1 3.7 31 133-163 41-71 (73)
382 PF10350 DUF2428: Putative dea 38.9 3.6E+02 0.0077 25.8 14.4 120 492-613 110-247 (255)
383 KOG1566 Conserved protein Mo25 37.9 4E+02 0.0087 26.1 16.7 185 63-252 91-288 (342)
384 KOG1837 Uncharacterized conser 37.8 8.5E+02 0.019 29.9 32.5 79 477-555 1539-1617(1621)
385 KOG3036 Protein involved in ce 37.5 3.6E+02 0.0078 25.4 13.4 100 192-292 137-248 (293)
386 cd07064 AlkD_like_1 A new stru 37.3 3.3E+02 0.0072 25.0 15.9 145 91-261 44-190 (208)
387 cd00870 PI3Ka_III Phosphoinosi 37.3 2.9E+02 0.0063 24.3 12.0 119 7-144 4-125 (166)
388 cd03562 CID CID (CTD-Interacti 37.2 2.2E+02 0.0048 22.9 9.7 46 475-520 33-78 (114)
389 PF11919 DUF3437: Domain of un 36.6 63 0.0014 24.9 4.0 57 448-510 4-60 (90)
390 PF14222 MOR2-PAG1_N: Cell mor 36.5 5.9E+02 0.013 27.7 33.9 218 85-311 27-275 (552)
391 KOG1222 Kinesin associated pro 35.2 5.5E+02 0.012 26.9 26.2 69 130-208 344-412 (791)
392 PF09759 Atx10homo_assoc: Spin 34.4 1.4E+02 0.0031 23.7 5.7 56 409-465 3-62 (102)
393 PF14222 MOR2-PAG1_N: Cell mor 34.3 6.4E+02 0.014 27.4 22.8 55 410-464 446-502 (552)
394 PF05327 RRN3: RNA polymerase 33.8 6.6E+02 0.014 27.4 19.3 37 475-511 342-380 (563)
395 COG5234 CIN1 Beta-tubulin fold 33.4 7E+02 0.015 27.6 19.3 145 6-163 376-526 (993)
396 PF13925 Katanin_con80: con80 33.4 1.2E+02 0.0027 26.5 5.9 53 114-166 47-104 (164)
397 PF06685 DUF1186: Protein of u 33.2 4.3E+02 0.0094 25.1 15.7 78 182-265 113-195 (249)
398 KOG1087 Cytosolic sorting prot 32.8 5.3E+02 0.012 27.2 11.0 102 397-512 13-116 (470)
399 KOG2005 26S proteasome regulat 32.7 7.1E+02 0.015 27.4 16.1 53 366-424 655-707 (878)
400 PF09759 Atx10homo_assoc: Spin 32.0 1.3E+02 0.0028 23.9 5.1 56 450-511 3-62 (102)
401 cd03562 CID CID (CTD-Interacti 30.1 1.8E+02 0.004 23.4 6.1 70 388-460 36-106 (114)
402 PF01417 ENTH: ENTH domain; I 30.0 3.2E+02 0.0069 22.6 8.6 60 372-431 21-81 (125)
403 PF08568 Kinetochor_Ybp2: Unch 29.5 7.5E+02 0.016 27.5 12.5 73 11-86 436-513 (633)
404 PF06371 Drf_GBD: Diaphanous G 29.0 1.7E+02 0.0037 26.2 6.4 55 406-461 130-186 (187)
405 PF08324 PUL: PUL domain; Int 27.9 5.4E+02 0.012 24.6 10.1 99 406-507 124-230 (268)
406 PF14911 MMS22L_C: S-phase gen 27.6 6.7E+02 0.015 25.5 16.9 97 428-524 64-169 (373)
407 PF04869 Uso1_p115_head: Uso1 26.3 6.5E+02 0.014 25.0 10.7 201 49-271 35-252 (312)
408 PF06812 ImpA-rel_N: ImpA-rela 26.0 2.1E+02 0.0046 20.1 5.0 55 32-88 5-59 (62)
409 smart00582 RPR domain present 25.5 3.7E+02 0.008 21.9 10.7 62 438-513 5-66 (121)
410 KOG2059 Ras GTPase-activating 24.9 2E+02 0.0044 31.4 6.5 79 369-450 360-439 (800)
411 KOG1566 Conserved protein Mo25 24.2 7E+02 0.015 24.6 22.3 119 182-300 168-295 (342)
412 KOG2753 Uncharacterized conser 24.2 7.1E+02 0.015 24.7 14.9 119 382-511 58-179 (378)
413 KOG2038 CAATT-binding transcri 23.2 1.1E+03 0.024 26.5 34.6 106 179-290 303-408 (988)
414 PF06628 Catalase-rel: Catalas 23.2 2.7E+02 0.006 20.0 5.2 38 81-118 15-53 (68)
415 KOG4646 Uncharacterized conser 22.5 4.8E+02 0.01 22.1 11.6 101 15-121 16-127 (173)
416 cd00864 PI3Ka Phosphoinositide 22.4 4.1E+02 0.0089 23.0 7.0 75 130-226 38-114 (152)
417 PF06371 Drf_GBD: Diaphanous G 22.2 2.9E+02 0.0062 24.6 6.5 56 144-208 129-186 (187)
418 PF14676 FANCI_S2: FANCI solen 22.1 5.3E+02 0.012 22.5 11.8 120 112-245 37-156 (158)
419 PF14911 MMS22L_C: S-phase gen 21.6 8.7E+02 0.019 24.8 21.7 38 130-167 64-105 (373)
420 cd00864 PI3Ka Phosphoinositide 21.2 3.9E+02 0.0085 23.1 6.7 28 433-462 73-100 (152)
421 COG5110 RPN1 26S proteasome re 20.9 1E+03 0.023 25.4 17.8 52 366-423 656-707 (881)
422 KOG3687 Tuberin - Rap/ran-GTPa 20.7 1.4E+03 0.03 26.7 23.8 37 427-463 299-335 (1697)
423 KOG2141 Protein involved in hi 20.4 1.2E+03 0.026 26.0 16.0 52 541-592 461-516 (822)
424 smart00145 PI3Ka Phosphoinosit 20.2 5.1E+02 0.011 23.3 7.4 51 406-462 55-105 (184)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-90 Score=670.87 Aligned_cols=664 Identities=56% Similarity=0.940 Sum_probs=614.8
Q ss_pred CCCCCCCHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhh
Q 005686 4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (683)
Q Consensus 4 ~~~~~~~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w 83 (683)
.|.|+|+++.++|+.++|++++|||++ +|+.+...|.++...|+|..||..+|...++.+..+|..|+.+|||.++.+|
T Consensus 2 ~~~w~p~e~~l~ql~~lLk~s~Spn~~-~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 2 AMTWQPDEQGLQQLAQLLKNSQSPNSE-TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred CCCCcccHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 478999999999999999999999999 9999999999999999999999999987678889999999999999999999
Q ss_pred ccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 005686 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (683)
Q Consensus 84 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 163 (683)
..+.++...++|..+++.+++.++.||...+.++.+|+...+...||+++|.+.+++.+++.+..++|+.+|..+|++..
T Consensus 81 ~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa 160 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA 160 (885)
T ss_pred cCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHH
Q 005686 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (683)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (683)
..+..++. ++.++.++|.++++++++++.+|..|+.|+..++-..+..+...++.+++.++.+.+|++++||+.+|.
T Consensus 161 ~~lds~~~---~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~ 237 (885)
T KOG2023|consen 161 QFLDSDVL---TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR 237 (885)
T ss_pred HHHhhhcc---cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 88766543 578999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhh
Q 005686 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (683)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 323 (683)
+|..+.+..++.+.||+..+++++++..++.+++|...|++||.++++.+...+.+.||+++++|+++..|.++++|+-.
T Consensus 238 alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred HHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999888
Q ss_pred hh-hcccCCCCCccCCCCcccccccCCCCCC-------CCC--CCccccccccHHHHHHHHHHHHHhhcCccchhhhHHH
Q 005686 324 VE-AEEDESLPDRDQDLKPRFHSSRLHGSEN-------PED--DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV 393 (683)
Q Consensus 324 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~-------~~~--dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (683)
++ .++|+..||++|++||.|++++.+|..+ .|| ||+|....|++|++++.+|+.++..+|+++++.++|+
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 87 5677889999999999999988765422 111 2334566899999999999999999999999999999
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcc
Q 005686 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (683)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (683)
+++.+.+++ |.+|++++.++|.+++||.+.+.+|++.++|+++..|.|..+.||..+||+|++++.|.... ..
T Consensus 398 Lk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~----~~ 470 (885)
T KOG2023|consen 398 LKEHLSSEE---WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD----SR 470 (885)
T ss_pred HHHHcCcch---hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC----Ch
Confidence 999999988 99999999999999999999999999999999999999999999999999999999999764 46
Q ss_pred hhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcc
Q 005686 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (683)
.+|+.+++..+++.+-|++.+||++||+|+..+-+..+..+.||+..|++.|+.++++++.+++...+++||+++.++|.
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHhhhHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH--hhCCcccCCC
Q 005686 554 ELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA--KVDSVAAGAQ 631 (683)
Q Consensus 554 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~ 631 (683)
.+.+|.|.+.+||++++.|+.++++|++++.+++|++.++.++|.+|.||+++++..++.++++..+. +.+.+.+.+.
T Consensus 551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~ 630 (885)
T KOG2023|consen 551 ALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEA 630 (885)
T ss_pred hcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence 99888899999999999999999999999999999999999999999999999999999999976443 4444456666
Q ss_pred CCchHHHHHHHHHHHHHHHhccchHHhHHh--hcCCccccCCCCcceec
Q 005686 632 YDKEFVVCCLDLLSGLAEGLGSGIESLVIS--LFPNLTWKSPKRKCILT 678 (683)
Q Consensus 632 ~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~--i~p~l~~~~~~~~~~~~ 678 (683)
+|+++..++++.++++++++|++..+.+.+ ++.+|..|..++-..|+
T Consensus 631 pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVR 679 (885)
T KOG2023|consen 631 PDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVR 679 (885)
T ss_pred CCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHH
Confidence 899999999999999999999999988743 66666666555544443
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-67 Score=546.89 Aligned_cols=605 Identities=25% Similarity=0.370 Sum_probs=516.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHH
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i 94 (683)
..+.|++.++.+||++ +|++|++.|+.....+.....|.+++.. +.++++|++|++++|+.+.++|+.++.+.+..|
T Consensus 4 ~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~--~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILAT--SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred hHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 5688999999999999 9999999999876656688888998875 899999999999999999999999999999999
Q ss_pred HHHHhhhh-hcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 005686 95 KSELLPCL-GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (683)
Q Consensus 95 ~~~Ll~~l-~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (683)
|..|+.++ .++.+.||+++|.+++.|++...+..||++++.+.++.+|+++..|+.|+.+|..+.+.++....+
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~----- 155 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP----- 155 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch-----
Confidence 99999977 478999999999999999999877799999999999999999999999999999999988876653
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc--hhhHHhHHHHHHHHHh----hhCCCCHHHHHHHHHHHHH
Q 005686 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFL----LSNDPSAEVRKLVCAAFNL 247 (683)
Q Consensus 174 ~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~l~~ 247 (683)
++..+.+.+.+++++++..||.+|+++++.++...+ +...+.+..++|.++. ..++.+.+..+.++++|.+
T Consensus 156 ---~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 156 ---HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred ---hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 478999999999999887799999999999998875 4444445555555544 4566778888999999999
Q ss_pred HHhhCccchhhhHHHHHHHHHHhhcCC--ChHHHHHHhhHHHHhhcc-CCchhhHHhhhhhhHHHHHhhcccChhhhhhh
Q 005686 248 LIEVRPSFLEPHLRNLFEYMLQVNKDT--DDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (683)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~-~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~ 324 (683)
+++..|+.+++|+..+++++++...+. ++.+|..|++++..+++. +...+...++...+++.++..|.+.++|.+|.
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 999999999999999999999987654 789999999999999887 33445566789999999999998877775554
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCC
Q 005686 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGD 403 (683)
Q Consensus 325 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~ 403 (683)
++|+ .|+||.+ +....|.+++++++.++|+ .++|.+++.+..++++++
T Consensus 313 ~~d~-------------------------~ded~~~-----~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~- 361 (1075)
T KOG2171|consen 313 NEDD-------------------------LDEDDEE-----TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE- 361 (1075)
T ss_pred cccc-------------------------ccccccc-----CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC-
Confidence 3321 1112111 3567899999999999986 889999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHH
Q 005686 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (683)
Q Consensus 404 ~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 483 (683)
|+.|+|++++|+.+++|+.+.+...++++++.+++.++|+||+||++||.++|+++..+.+. ..+.+.+.+.+.
T Consensus 362 --w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~----iqk~~~e~l~~a 435 (1075)
T KOG2171|consen 362 --WKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE----IQKKHHERLPPA 435 (1075)
T ss_pred --HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH----HHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999876 355566667778
Q ss_pred HHHHhccC-CccHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHhccccCchhH
Q 005686 484 LLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGFELNQPVY 560 (683)
Q Consensus 484 l~~~l~d~-~~~v~~~a~~al~~l~~~~-~~~l~~~l~~i~~~L~~~l~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (683)
|...+.++ +++|+.+|+.|+-++.+.| ++.+.||++.+++.++..+... ...+++.++.+|++++.+++..|. +|
T Consensus 436 L~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~--pY 513 (1075)
T KOG2171|consen 436 LIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI--PY 513 (1075)
T ss_pred HHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH--hH
Confidence 88888775 5899999999999999998 6789999999999666656544 456677999999999999999997 89
Q ss_pred HHhhhHHHHHHHhcCCCCCc-ch-hhHHhHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHH
Q 005686 561 LDILMPPLIAKWQQLPNSDK-DL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFV 637 (683)
Q Consensus 561 ~~~~~~~l~~~~~~~~~~~~-~~-~~~~~~l~~l~~~~g~-~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 637 (683)
++.+||.+.+.+++..+++. .+ .++++|++.++.++|+ .|.|+..+++..++..-.+.. ..+...+
T Consensus 514 ~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~-----------~~dd~~~ 582 (1075)
T KOG2171|consen 514 FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ-----------DDDDPLR 582 (1075)
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch-----------hhccccH
Confidence 99999999999887653333 33 4689999999999996 899999999997765532111 1234467
Q ss_pred HHHHHHHHHHHHHhccchHHhHHhhcCCc-cccCCCCcceeccc
Q 005686 638 VCCLDLLSGLAEGLGSGIESLVISLFPNL-TWKSPKRKCILTNK 680 (683)
Q Consensus 638 ~~a~~~l~~l~~~~~~~~~~~l~~i~p~l-~~~~~~~~~~~~~~ 680 (683)
...+..|+++|+.+|++|.||++.++|.| +.+..+|+..+.|+
T Consensus 583 sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~ 626 (1075)
T KOG2171|consen 583 SYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE 626 (1075)
T ss_pred HHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc
Confidence 77888899999999999999999999666 78888888877654
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-57 Score=451.91 Aligned_cols=584 Identities=25% Similarity=0.424 Sum_probs=485.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHH-----------HHh
Q 005686 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (683)
Q Consensus 16 ~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i-----------~~~ 82 (683)
++.++|..++|||.. +|+.|+++|.++.. .|+|+..|.++|++ ...+...|..|++.|||.+ ..+
T Consensus 2 ~~~~~le~tlSpD~n-~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n-~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQN-VRKRAEKQLEQAQSQNFPQFLVLLSEVLAN-DNSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred cHHHHHHHHcCCCcc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 567888999999999 99999999999864 68999999999994 4778999999999999998 467
Q ss_pred hccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-CcCChHHHHHHHHHHhccCChh-HHhHHHHHHHHHHh
Q 005686 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDIN-HMEGAMDALSKICE 160 (683)
Q Consensus 83 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-~~~~~~~l~~~l~~~l~s~~~~-~r~~al~~l~~l~~ 160 (683)
|-.++.+.|+++|+.++..|+++.+..++.++++++.|+..+ +.+.||++++.+.....++.+. +|+++++++|.+|+
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987 6789999999999999876654 99999999999999
Q ss_pred hchhccccCCCCCCcchhHhhHHHHHHhhcC--CCHHHHHHHHHHHHHHHhccchhhHHhHH--HHHHHHHhhhCCCCHH
Q 005686 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAE 236 (683)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~ 236 (683)
+...... ....+.++..++.+... ++..||.+|+++|....++....+....+ -+|+.+++..+.+|.+
T Consensus 160 ~i~pevl-------~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~ 232 (859)
T KOG1241|consen 160 DIDPEVL-------EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEE 232 (859)
T ss_pred cCCHHHH-------HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHH
Confidence 8876522 23467888888888765 67899999999999888876555544332 3689999999999999
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHH-HHHHHHHhhcCCChHHHHHHhhHHHHhhccCCc-----------------hhh
Q 005686 237 VRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP-----------------HEN 298 (683)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~-----------------~~~ 298 (683)
++.+++.||.+++..+++++.+|+.. ++...+..+++++++|...+++||+++|+.+.. ...
T Consensus 233 i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~f 312 (859)
T KOG1241|consen 233 IQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYF 312 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHH
Confidence 99999999999999999999999986 999999999999999999999999999876321 122
Q ss_pred HHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 005686 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (683)
Q Consensus 299 ~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l 378 (683)
.+..++.++|.++..|..-+ +++|| +.|++.++|..||..+
T Consensus 313 a~~a~~~v~P~Ll~~L~kqd-----------------------------------e~~d~----DdWnp~kAAg~CL~l~ 353 (859)
T KOG1241|consen 313 ARQALQDVVPVLLELLTKQD-----------------------------------EDDDD----DDWNPAKAAGVCLMLF 353 (859)
T ss_pred HHHHHhHhhHHHHHHHHhCC-----------------------------------CCccc----ccCcHHHHHHHHHHHH
Confidence 23445578888877765321 11111 2499999999999999
Q ss_pred HhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHH
Q 005686 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (683)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (683)
++..|+.++++++|++.+.+++++ |+.|++|.+++|++.++- .....+...+.+|.++..+.|++..||.++.|++
T Consensus 354 A~~~~D~Iv~~Vl~Fiee~i~~pd---wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtl 430 (859)
T KOG1241|consen 354 AQCVGDDIVPHVLPFIEENIQNPD---WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTL 430 (859)
T ss_pred HHHhcccchhhhHHHHHHhcCCcc---hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHH
Confidence 999999999999999999999999 999999999999999986 4567899999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHHHH
Q 005686 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA---------EELAPRLEIILQHLMMA 528 (683)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~---------~~l~~~l~~i~~~L~~~ 528 (683)
|+++++++.. .....++.+.++.+++.++| .|+|...+||++..+++.+. +...|+++.|+..|+..
T Consensus 431 grI~d~l~e~---~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 431 GRIADFLPEA---IINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHHHhhchhh---cccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 9999998854 35677888999999999987 68899999999998887651 12345666666665554
Q ss_pred HHHhh---------------------------------------------------------------------------
Q 005686 529 FGKYQ--------------------------------------------------------------------------- 533 (683)
Q Consensus 529 l~~~~--------------------------------------------------------------------------- 533 (683)
....+
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~ 586 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKV 586 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 41100
Q ss_pred -----------------------H-hHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhH
Q 005686 534 -----------------------R-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLEC 588 (683)
Q Consensus 534 -----------------------~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 588 (683)
+ .+.+.++-++++++.++|..|. +|++.+.|.+...+.+. .++.+ ..+++.
T Consensus 587 ~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~--kym~~f~pyL~~gL~n~--~e~qVc~~aVgl 662 (859)
T KOG1241|consen 587 GSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA--KYMPAFKPYLLMGLSNF--QEYQVCAAAVGL 662 (859)
T ss_pred cccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH--HHHHHHHHHHHHHhhcc--hHHHHHHHHHHH
Confidence 0 0123456778888888999887 79999999988877654 35555 467899
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCccc
Q 005686 589 FTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLTW 668 (683)
Q Consensus 589 l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~ 668 (683)
++.++++++.+|.||++.+++.+++.|.+.. ..++++-..+.+||.|+-+.|.+|.+|+..++|+|+.
T Consensus 663 Vgdl~raL~~~i~py~d~~mt~Lvq~Lss~~------------~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 663 VGDLARALEDDILPYCDELMTVLVQCLSSPN------------LHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHccCcc------------ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887643 2345555668889999999999999999999999965
Q ss_pred cC
Q 005686 669 KS 670 (683)
Q Consensus 669 ~~ 670 (683)
++
T Consensus 731 as 732 (859)
T KOG1241|consen 731 AS 732 (859)
T ss_pred HH
Confidence 54
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.6e-46 Score=359.16 Aligned_cols=583 Identities=17% Similarity=0.283 Sum_probs=452.5
Q ss_pred HHHHHHh-hcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHH-----------HHh
Q 005686 17 ICRLLEQ-QISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (683)
Q Consensus 17 l~~~l~~-~~s~~~~~~r~~A~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i-----------~~~ 82 (683)
+.++.++ .+|||.. +|..|+.+|.+++. ..+|+..+.+.+++ .+.+++.|..|++.|||.+ ...
T Consensus 6 f~~l~~n~vLspD~n-~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d-~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qr 83 (858)
T COG5215 6 FRCLGKNHVLSPDPN-ARLRAEAQLLELQSGDFEQFISLLVQVLCD-LNSNDQLRMVAGLILKNSLHANDPELQKGCSQR 83 (858)
T ss_pred HHHHHhcccCCCCCC-ccccHHHHHHHhccccHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHh
Confidence 3444544 4689999 99999999999876 45678888899984 4789999999999999998 457
Q ss_pred hccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-CcCChHHHHHHHHHHhccCCh-hHHhHHHHHHHHHHh
Q 005686 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICE 160 (683)
Q Consensus 83 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-~~~~~~~l~~~l~~~l~s~~~-~~r~~al~~l~~l~~ 160 (683)
|-.+++|.|+++|...+++|.++.+.+-..++++++.|++.+ +.+.||+++..+.....++.+ ..+..++.+++..|+
T Consensus 84 W~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce 163 (858)
T COG5215 84 WLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE 163 (858)
T ss_pred hccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998 678999999999999887665 578889999999998
Q ss_pred hchhc-cccCCCCCCcchhHhhHHHHHHhh-cC-CCHHHHHHHHHHHHHHHhccchhhHH--hHHHHHHHHHhhhCCCCH
Q 005686 161 DIPQV-LDSDVPGLAECPINIFLPRLLQFF-QS-PHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDPSA 235 (683)
Q Consensus 161 ~~~~~-~~~~~~~~~~~~~~~i~~~l~~~l-~~-~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~ 235 (683)
....+ +. ...+.++-.+..+. +. ++..+|.+|+++|..-+.++...+.. .-+-+|+.++...+.++.
T Consensus 164 s~~Pe~li--------~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~ 235 (858)
T COG5215 164 SEAPEDLI--------QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDE 235 (858)
T ss_pred ccCHHHHH--------HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcH
Confidence 76552 21 11344555555443 33 67899999999998755554333322 122468889999999999
Q ss_pred HHHHHHHHHHHHHHhhCccchhhhHHH-HHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHH--------------
Q 005686 236 EVRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK-------------- 300 (683)
Q Consensus 236 ~~~~~~~~~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-------------- 300 (683)
++...++.||++++..+++++.+|+.. +..+....+++++++|...|++||+++|+.+...+...
T Consensus 236 e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa 315 (858)
T COG5215 236 ELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFA 315 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchH
Confidence 999999999999999999999999975 55666778999999999999999999998743322222
Q ss_pred -hhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 005686 301 -EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (683)
Q Consensus 301 -~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~ 379 (683)
..+..++|.++..+...+ +|.+ .+.|++.++|..||..++
T Consensus 316 ~aav~dvlP~lL~LL~~q~-----------------------------------ed~~----~DdWn~smaA~sCLqlfa 356 (858)
T COG5215 316 RAAVADVLPELLSLLEKQG-----------------------------------EDYY----GDDWNPSMAASSCLQLFA 356 (858)
T ss_pred HHHHHHHHHHHHHHHHhcC-----------------------------------CCcc----ccccchhhhHHHHHHHHH
Confidence 223457777777665322 1111 234999999999999999
Q ss_pred hhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHH
Q 005686 380 NVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (683)
Q Consensus 380 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 458 (683)
+..|+.++..++.++.+.+++++ |..|++|.+++|++.++-. ....+++++.+|.+...+.|+.-.|+.+++||+|
T Consensus 357 q~~gd~i~~pVl~FvEqni~~~~---w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g 433 (858)
T COG5215 357 QLKGDKIMRPVLGFVEQNIRSES---WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFG 433 (858)
T ss_pred HHhhhHhHHHHHHHHHHhccCch---hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHH
Confidence 99999999999999999999998 9999999999999998864 4567899999999999999999999999999999
Q ss_pred HHHHHHHhhhCCC--------------------------------------------cchhhHHHHHHHHHHHh--ccCC
Q 005686 459 RFSKFIVQDIGHQ--------------------------------------------NGREQFEKVLMGLLKRI--LDTN 492 (683)
Q Consensus 459 ~l~~~~~~~~~~~--------------------------------------------~~~~~~~~~l~~l~~~l--~d~~ 492 (683)
+++.+....++|. ...++...++..|++.- .+++
T Consensus 434 ~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne 513 (858)
T COG5215 434 AIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNE 513 (858)
T ss_pred HHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 9998876443221 12334444555554432 2344
Q ss_pred ccHHHHHHHHHHHHHHHh--------------------------------------------------------cccchH
Q 005686 493 KRVQEAACSAFATLEEEA--------------------------------------------------------AEELAP 516 (683)
Q Consensus 493 ~~v~~~a~~al~~l~~~~--------------------------------------------------------~~~l~~ 516 (683)
...|..+..+|+.++.-+ +.++.+
T Consensus 514 ~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~ 593 (858)
T COG5215 514 SNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED 593 (858)
T ss_pred hhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 667888888888776321 111222
Q ss_pred HHHHHHHHHHHHHHHhhHhH-HHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHH
Q 005686 517 RLEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQ 594 (683)
Q Consensus 517 ~l~~i~~~L~~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~ 594 (683)
.-+.++..+++.+++.+... -..++.+|+.+..+.++.|. .|++.+.|.+...++. .++.+ ..+++.++.+++
T Consensus 594 v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe--~y~~~fiPyl~~aln~---~d~~v~~~avglvgdlan 668 (858)
T COG5215 594 VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFE--QYASKFIPYLTRALNC---TDRFVLNSAVGLVGDLAN 668 (858)
T ss_pred HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHhcc---hhHHHHHHHHHHHHHHHH
Confidence 23334444444444432222 23678999999999999997 8999999999888743 24444 467899999999
Q ss_pred HhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCccc
Q 005686 595 ALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLTW 668 (683)
Q Consensus 595 ~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~ 668 (683)
.+|.+|.+|.+.++..+.+.|.+.- ..++++-..+.+||.|+-++|-+|.+|++.++-.++.
T Consensus 669 tl~~df~~y~d~~ms~LvQ~lss~~------------~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qq 730 (858)
T COG5215 669 TLGTDFNIYADVLMSSLVQCLSSEA------------THRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQ 730 (858)
T ss_pred HhhhhHHHHHHHHHHHHHHHhcChh------------hccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999998887653 3566777789999999999999999999999877743
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-38 Score=325.26 Aligned_cols=613 Identities=20% Similarity=0.298 Sum_probs=454.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc--------
Q 005686 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-------- 85 (683)
Q Consensus 14 ~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~-------- 85 (683)
++.+.+++.++.++|++ .|++|+++|+++++.|+|+..|++++.++ +.+..+|++|+++|||.|.+.|+.
T Consensus 3 ~~~l~~~~~~T~d~d~~-~R~~AE~~L~q~~K~pgFv~~lLqIi~~d-~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAK-ERKAAEQQLNQLEKQPGFVSSLLQIIMDD-GVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred hHHHHHHHHHhcCCChH-HHHHHHHHHHHhhcCCcHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 46899999999999999 99999999999999999999999999863 678899999999999999999975
Q ss_pred -CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 86 -l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
+.++.|..+|+.++..+...+..+|.+...++..|.+.+.|..||++++.+...+++++.....+|+.++..+++....
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 5789999999999999988899999999999999999999999999999999999999999999999999999998764
Q ss_pred ccccCCCCCCcchhHhhHHHHH----HhhcCCC---HHHHHHHHHHHHHHHhc-cchhhH--HhHHHHHHHHHhhhCC--
Q 005686 165 VLDSDVPGLAECPINIFLPRLL----QFFQSPH---TSLRKLSLGSVNQFIML-MPSALF--VSMDQYLQGLFLLSND-- 232 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~----~~l~~~~---~~vr~~a~~~l~~~~~~-~~~~~~--~~~~~~l~~l~~~~~~-- 232 (683)
-..++ +..+...+...+|.+. +.+.+++ .++.+..+|++..++.+ +|..+. ..+..+++.+...++-
T Consensus 161 k~~ee-R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 161 KKDEE-RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred ccccc-cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 32222 1111233444455444 4455554 46677888988888754 565543 2344556655554321
Q ss_pred ---------------CCHHHHHHHHHHHHHHHhhCccc--------------hhhhHHHHHHHHHHhhc---C---CChH
Q 005686 233 ---------------PSAEVRKLVCAAFNLLIEVRPSF--------------LEPHLRNLFEYMLQVNK---D---TDDD 277 (683)
Q Consensus 233 ---------------~~~~~~~~~~~~l~~l~~~~~~~--------------~~~~l~~l~~~~~~~~~---~---~~~~ 277 (683)
+-++++++++..+.++.+++++. +..+.+.+++..++.+. . -.++
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 12457889999999998876532 12233444444443321 1 3567
Q ss_pred HHHHHhhHHHHhhccCCchhhHHhhhhhhHHH-HHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCC
Q 005686 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPV-LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (683)
Q Consensus 278 vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~-l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (683)
+-..++.++..+......++.++|++.-++.. +++.|+.+++|++.|++||.| |+|.+++.- +
T Consensus 320 vl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~E-------YiR~~~Di~--------e- 383 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYE-------YIRKKFDIF--------E- 383 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHH-------HHHhcCchh--------c-
Confidence 88889999998887777789999999998875 569999999999999887665 666554321 1
Q ss_pred CCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHcc-----CCCCChhhHHHHHHHHHHHHhcchh--hhhh
Q 005686 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIK--GLYP 429 (683)
Q Consensus 357 dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~l~~~~~~--~~~~ 429 (683)
+.++.+.+|..++-.+++.-|++.++.+++++.+.+++ ++..+++.+++|++.+|++++...+ .+..
T Consensus 384 ------d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~ 457 (1010)
T KOG1991|consen 384 ------DGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS 457 (1010)
T ss_pred ------ccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH
Confidence 12457788999999999999999999999999988872 2345599999999999999976532 2233
Q ss_pred hHHH-HHHHHhhccCCCChhHHHHHHHHHHHHHH-HHHhhhCCCcchhhHHHHHHHHHHHhc-cCCccHHHHHHHHHHHH
Q 005686 430 HLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSK-FIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATL 506 (683)
Q Consensus 430 ~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l 506 (683)
.++. +++++.+.++++.-..|..|||++++++. .++ ....+..++....++|. |++-.||..|+.||..+
T Consensus 458 ~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 458 QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-------DPNNLSEALELTHNCLLNDNELPVRVEAALALQSF 530 (1010)
T ss_pred HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHH
Confidence 3443 67889999999999999999999999994 443 45677888999999988 66788999999999999
Q ss_pred HHHhc---ccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCC----C-
Q 005686 507 EEEAA---EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN----S- 578 (683)
Q Consensus 507 ~~~~~---~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~- 578 (683)
+.++. +.++++++++|+.|+++.+..+.+.+ ..++..++...+.++. ||...+++.|...+.+.-. +
T Consensus 531 I~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~L---t~vme~iV~~fseEls--PfA~eL~q~La~~F~k~l~~~~~~~ 605 (1010)
T KOG1991|consen 531 ISNQEQADEKVSAHVPPIMQELLKLSNEVENDDL---TNVMEKIVCKFSEELS--PFAVELCQNLAETFLKVLQTSEDED 605 (1010)
T ss_pred HhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHH---HHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHhccCCCC
Confidence 99885 55999999999999999987655544 4566777788888876 7999999888887554211 1
Q ss_pred ----Ccch--hhHHhHHHHHHHHhcc--c-cccchHHHHHHHHHHHHHHHHH---hh----CCcccCCCCCchHHHHHHH
Q 005686 579 ----DKDL--FPLLECFTSIAQALGA--G-FTQFAQPVFQRCINIIQTQQLA---KV----DSVAAGAQYDKEFVVCCLD 642 (683)
Q Consensus 579 ----~~~~--~~~~~~l~~l~~~~g~--~-f~~~~~~~~~~l~~~l~~~~~~---~~----~~~~~~~~~~~~~~~~a~~ 642 (683)
++.+ ..++.++..+...+.. . +...-+.++|.+..+|++.... +. +..+. ..+++--.++.
T Consensus 606 ~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~---~~~~Isp~mW~ 682 (1010)
T KOG1991|consen 606 ESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF---LSKEISPIMWG 682 (1010)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh---hhcccCHHHHH
Confidence 1112 2455666666666554 1 2222233445555555554221 00 00000 11223334577
Q ss_pred HHHHHHHHhccchHHhHHhhcCCc
Q 005686 643 LLSGLAEGLGSGIESLVISLFPNL 666 (683)
Q Consensus 643 ~l~~l~~~~~~~~~~~l~~i~p~l 666 (683)
+|.-+.+++.+.-..|++.++|.|
T Consensus 683 ll~li~e~~~~~~~dyf~d~~~~l 706 (1010)
T KOG1991|consen 683 LLELILEVFQDDGIDYFTDMMPAL 706 (1010)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 788888888777777888888877
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-34 Score=299.24 Aligned_cols=584 Identities=17% Similarity=0.179 Sum_probs=429.5
Q ss_pred CCCCHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh-c---------CCChHHHHHHHhhhccCCCHHHHHHHHHHHH
Q 005686 7 WQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYS-Q---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLK 76 (683)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~-~---------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~ 76 (683)
|.+++ .+..|..++.. ++|++ +|+-|.-.++++. + ...+-..++..+.+ +..+.+|+.-+-.+-
T Consensus 32 ~~~~~-~l~~L~~i~~~--~~~p~-~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~--E~~~~vr~k~~dviA 105 (1075)
T KOG2171|consen 32 AKTEP-LLPALAHILAT--SADPQ-VRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS--ETEPSVRHKLADVIA 105 (1075)
T ss_pred hcccc-hHHHHHHHHhc--CCChH-HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHH
Confidence 33444 44455555554 45667 9999988888742 1 12244566776665 788899998776654
Q ss_pred HHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcC---cCChHHHHHHHHHHhccCChhHHhHHHH
Q 005686 77 NNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEGAMD 153 (683)
Q Consensus 77 ~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~---~~~~~~l~~~l~~~l~s~~~~~r~~al~ 153 (683)
...++ .-++....+.+.|+++..++++..|..+-.++..+....+ .+...++.+.+.+++++++..+|..+++
T Consensus 106 eia~~----~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~r 181 (1075)
T KOG2171|consen 106 EIARN----DLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVR 181 (1075)
T ss_pred HHHHh----ccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHH
Confidence 43333 2223667789999999999999999999999999988754 3456799999999999877779999999
Q ss_pred HHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhh----cCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhh
Q 005686 154 ALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL 229 (683)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l----~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 229 (683)
+++.++......-.. -+.+..++|.++..+ .+.+......++++|..+++..|+.+.+++..+++.....
T Consensus 182 A~~a~~~~~~~~~~~------~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~I 255 (1075)
T KOG2171|consen 182 ALGAFAEYLENNKSE------VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEI 255 (1075)
T ss_pred HHHHHHHHhccchHH------HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 999999887521110 023455666555554 5567788899999999999999999999999999988887
Q ss_pred hCCC--CHHHHHHHHHHHHHHHhhCccch---hhhHHHHHHHHHHhhcCCC----------------hHHHHHHhhHHHH
Q 005686 230 SNDP--SAEVRKLVCAAFNLLIEVRPSFL---EPHLRNLFEYMLQVNKDTD----------------DDVALEACEFWHS 288 (683)
Q Consensus 230 ~~~~--~~~~~~~~~~~l~~l~~~~~~~~---~~~l~~l~~~~~~~~~~~~----------------~~vr~~a~~~l~~ 288 (683)
..+. ++.+|..+++++..+++..|... .++.+.++..++..+.+.+ +.....|.+.+..
T Consensus 256 a~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDr 335 (1075)
T KOG2171|consen 256 AKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDR 335 (1075)
T ss_pred hhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHH
Confidence 7653 57899999999999998866444 3466677777776653211 1124455555555
Q ss_pred hhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHH
Q 005686 289 YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (683)
Q Consensus 289 l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r 368 (683)
++.+- ..+.+ ++.+++.+-..+. +.+|..|
T Consensus 336 lA~~L-~g~~v---~p~~~~~l~~~l~----------------------------------------------S~~w~~R 365 (1075)
T KOG2171|consen 336 LALHL-GGKQV---LPPLFEALEAMLQ----------------------------------------------STEWKER 365 (1075)
T ss_pred HHhcC-Chhhe---hHHHHHHHHHHhc----------------------------------------------CCCHHHH
Confidence 55441 11222 2222222211111 2358899
Q ss_pred HHHHHHHHHHHhhcCc---cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHH-HHHHHhhccCC
Q 005686 369 KCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIPLLDD 444 (683)
Q Consensus 369 ~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~d 444 (683)
+++.-+|+.+++..++ ..++.+++.+...+++++ +++|.||+.++|+++......+.++..+ +.|.++..+.+
T Consensus 366 ~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph---prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 366 HAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH---PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS 442 (1075)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc
Confidence 9999999999999987 457889999999999999 9999999999999999887777655554 55677777776
Q ss_pred -CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHh-ccCCccHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 005686 445 -KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI-LDTNKRVQEAACSAFATLEEEAAEELAPRLEIIL 522 (683)
Q Consensus 445 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l-~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~ 522 (683)
.+++|...|+.++-.+++.+.+. ...+|++.++...+..+ +++.+.|++.++.||++++...++.+.||++.+|
T Consensus 443 ~~~~rV~ahAa~al~nf~E~~~~~----~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~M 518 (1075)
T KOG2171|consen 443 TQNVRVQAHAAAALVNFSEECDKS----ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLM 518 (1075)
T ss_pred cCchHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 57899999999999999988765 68899999999555554 5567899999999999999999999999999999
Q ss_pred HHHHHHHHHhhHh---HHH-HHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCC-CCCcchhhHHhHHHHHHHHhc
Q 005686 523 QHLMMAFGKYQRR---NLR-IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP-NSDKDLFPLLECFTSIAQALG 597 (683)
Q Consensus 523 ~~L~~~l~~~~~~---~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~l~~~~g 597 (683)
+.|...+.+.+++ .++ ..++|++.++.++|++-+. ++..++++.+...-.+.. ++++.....+..++++|+.+|
T Consensus 519 p~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~-~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg 597 (1075)
T KOG2171|consen 519 PLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFL-PLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILG 597 (1075)
T ss_pred HHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh-HhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhc
Confidence 9999999987633 334 7899999999999966544 588888887766532222 223334567888999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhh-CC-----------cccCCCCCc----------hHHHHHHHHHHHHHHHhccch
Q 005686 598 AGFTQFAQPVFQRCINIIQTQQLAKV-DS-----------VAAGAQYDK----------EFVVCCLDLLSGLAEGLGSGI 655 (683)
Q Consensus 598 ~~f~~~~~~~~~~l~~~l~~~~~~~~-~~-----------~~~~~~~~~----------~~~~~a~~~l~~l~~~~~~~~ 655 (683)
++|.||++.+||.++........... |+ .+.....++ +=+++|+.+++.++..++.+|
T Consensus 598 ~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F 677 (1075)
T KOG2171|consen 598 DDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAF 677 (1075)
T ss_pred hhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999998877654432110 10 000000011 114789999999999999999
Q ss_pred HHhHHhhcC
Q 005686 656 ESLVISLFP 664 (683)
Q Consensus 656 ~~~l~~i~p 664 (683)
.||+.++++
T Consensus 678 ~pYve~v~~ 686 (1075)
T KOG2171|consen 678 APYVEQVVE 686 (1075)
T ss_pred hhHHHHHHH
Confidence 999988876
No 7
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=275.15 Aligned_cols=601 Identities=19% Similarity=0.270 Sum_probs=434.1
Q ss_pred HhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc------
Q 005686 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------ 85 (683)
Q Consensus 12 ~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~------ 85 (683)
.+++.+.+.|.++++||++ +|+-|++.|++...++++...+++++.+ +..++++|..|++.+||.++++|..
T Consensus 2 ~~le~l~~~l~qTl~pdps-~rk~aEr~L~~~e~q~~y~l~lL~Lv~~-~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPS-VRKPAERALRSLEGQQNYPLLLLNLVAN-GQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred ccHHHHHHHHHhcCCCCCc-cCchHHHHHHHhccCCCchHHHHHHHhc-cCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 3578899999999999999 9999999999999999999999999884 3669999999999999999999963
Q ss_pred -CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 86 -l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
+.++.++.||..++.++-+....++.+++.+++.|++.+.|..||.++|.+...+++.|.++..+.+..-..+.+.+..
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ 159 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP 159 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc
Confidence 6788999999999999988889999999999999999999999999999999999999999988988888889998887
Q ss_pred ccccCCCCCCc----------chhHhhHHHHHHhhc--CCCH-------HHHHHHHHHHHHHH-hccchhhHHhHHHHHH
Q 005686 165 VLDSDVPGLAE----------CPINIFLPRLLQFFQ--SPHT-------SLRKLSLGSVNQFI-MLMPSALFVSMDQYLQ 224 (683)
Q Consensus 165 ~~~~~~~~~~~----------~~~~~i~~~l~~~l~--~~~~-------~vr~~a~~~l~~~~-~~~~~~~~~~~~~~l~ 224 (683)
.+++. +++. ..+..++....+..+ +.+. .+....++.+.++. +.+|+.+.+++..+|+
T Consensus 160 efrSd--aL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 160 EFRSD--ALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred ccccH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 66542 1110 011122222222221 1222 23344555565554 5678999999999999
Q ss_pred HHHhhhCC-------C--C----HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCC-----ChHHHHHHhhHH
Q 005686 225 GLFLLSND-------P--S----AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT-----DDDVALEACEFW 286 (683)
Q Consensus 225 ~l~~~~~~-------~--~----~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~vr~~a~~~l 286 (683)
.+++.+.- . + .++|..+|+.+.-.+..+++.+.+++++++...+..+.+. .+.....|++||
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FL 317 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFL 317 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 99886541 1 1 3578889999999999999999999999998887776432 356778899999
Q ss_pred HHhhccCCchhhH--HhhhhhhHHH-HHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccc
Q 005686 287 HSYFEAQLPHENL--KEFLPRLVPV-LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (683)
Q Consensus 287 ~~l~~~~~~~~~~--~~~l~~l~~~-l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~ 363 (683)
..+++.+...+.+ ...+.++... +++.+...++|+|.+++++.| |+|... +|+ |-|
T Consensus 318 t~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~ple-------YiRRDl-----EGs------Dvd--- 376 (960)
T KOG1992|consen 318 TSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLE-------YIRRDL-----EGS------DVD--- 376 (960)
T ss_pred HHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHH-------HHHHhc-----ccC------Ccc---
Confidence 9998874333222 2344555543 357777788888888776544 444221 111 111
Q ss_pred cccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHc---cCCCCChhhHHHHHHHHHHHHhcch---hh---------hh
Q 005686 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS---ASGDEAWKDREAAVLALGAIAEGCI---KG---------LY 428 (683)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~r~aal~~l~~l~~~~~---~~---------~~ 428 (683)
+.|++|.+.+..+++.+...+.+.+...+...++ .+.+.||+.++.++..+.+++.... .. +.
T Consensus 377 --TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 377 --TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred --hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 5789999999999999976666666555555554 2224559999999999988876421 11 11
Q ss_pred hhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 429 PHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 429 ~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
.++ .++.|.+...=..++|.++..++.-+-.+= .+..++++-.++|.+...++.++..|...|+.++..+.
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR--------~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFR--------NQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccceeeeec--------ccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 222 334554444333568888888754333332 23457788899999999999888999999999999887
Q ss_pred HHh---------cccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCC-
Q 005686 508 EEA---------AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN- 577 (683)
Q Consensus 508 ~~~---------~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 577 (683)
-.. .+.+.||...++..|...+..++...-...+.+|-.+........- ++.+.+++.+-+.+.....
T Consensus 527 ~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~--p~~~~~l~~Lteiv~~v~KN 604 (960)
T KOG1992|consen 527 TVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAII--PHAPELLRQLTEIVEEVSKN 604 (960)
T ss_pred ccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhh--hhhhHHHHHHHHHHHHHhcC
Confidence 443 2467899999999999888766544444566666666666555543 5777777766665544321
Q ss_pred -CCcch-hhHHhHHHHHHHHhcc----ccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHh
Q 005686 578 -SDKDL-FPLLECFTSIAQALGA----GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGL 651 (683)
Q Consensus 578 -~~~~~-~~~~~~l~~l~~~~g~----~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~ 651 (683)
.++.. +.++++++.+.+..+. ..+.+-..++|.+-.+|.+.. .|+.-.++.+++.+++..
T Consensus 605 Ps~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI--------------~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 605 PSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI--------------QEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhc
Confidence 23332 5788889888887765 245677778887777777653 257777899999999998
Q ss_pred ccc----hHHhHHhhc
Q 005686 652 GSG----IESLVISLF 663 (683)
Q Consensus 652 ~~~----~~~~l~~i~ 663 (683)
+.. |.++++.++
T Consensus 671 ~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 671 SGTIPDSYSPLFPPLL 686 (960)
T ss_pred CCCCchhHHHHHHHhc
Confidence 884 444444444
No 8
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=4.1e-29 Score=254.05 Aligned_cols=600 Identities=19% Similarity=0.259 Sum_probs=422.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc---------
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--------- 85 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~--------- 85 (683)
+.+...|.+++|||+. +|.+|+.+|+++...++|...|.++..+ ...+-..|+.|++.|++.+.++|..
T Consensus 4 ~~ii~~L~~~ls~d~~-vr~~AE~~l~qle~~~~f~~aL~~va~~-~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQN-VRSQAETQLKQLELTEGFGVALAEVAAN-KDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHHHHHHhhcCCChh-HHHHHHHHHhccccchHHHHHHHHHHhC-cccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 5688999999999999 9999999999999999999999998874 4678899999999999999999974
Q ss_pred -CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 86 -l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
.+.+.|..||+.|+..+-+++..+|+.++.++..|+..++|+.||++++.+.+++.++|.+...+++++|..+......
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH
Confidence 4567889999999998889999999999999999999999999999999999999999999999999999999887653
Q ss_pred ccccCCCCCCcchhHhhHHHHH---HhhcCCCHHHHHHH--HHHHHHHHhccc-------hh----hHHhHHHHHHHHHh
Q 005686 165 VLDSDVPGLAECPINIFLPRLL---QFFQSPHTSLRKLS--LGSVNQFIMLMP-------SA----LFVSMDQYLQGLFL 228 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~---~~l~~~~~~vr~~a--~~~l~~~~~~~~-------~~----~~~~~~~~l~~l~~ 228 (683)
+..... .+..++.+. ......+...|..+ .+.+..+...+. .. +.+-+.++++.+-.
T Consensus 162 ee~~~~-------~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h 234 (1005)
T KOG2274|consen 162 EEMFFV-------GPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEH 234 (1005)
T ss_pred HHHhcc-------cccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 211111 122233333 33333344444333 344444432221 11 12223344444444
Q ss_pred hhC--C-CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhh----------------------cCCCh------H
Q 005686 229 LSN--D-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN----------------------KDTDD------D 277 (683)
Q Consensus 229 ~~~--~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~----------------------~~~~~------~ 277 (683)
.++ + .+...|...++++..+.+..|..+.+++..+++..++.. .+.++ .
T Consensus 235 ~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~ 314 (1005)
T KOG2274|consen 235 PLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVET 314 (1005)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHH
Confidence 332 2 345678899999999999999988888776666544321 01111 2
Q ss_pred HHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCC
Q 005686 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (683)
Q Consensus 278 vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d 357 (683)
.....++|+..+++.....+.++..++.+++.+...++.+++.++.|.+|+++.. .++
T Consensus 315 l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV----------------------~dE 372 (1005)
T KOG2274|consen 315 LVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFV----------------------ADE 372 (1005)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhh----------------------ccC
Confidence 2455677888887763334455556777888888888888888888877654310 001
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHcc-------CCCCChhhHHHHHHHHHHHHhcchhhhhhh
Q 005686 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-------SGDEAWKDREAAVLALGAIAEGCIKGLYPH 430 (683)
Q Consensus 358 d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-------~~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 430 (683)
|+ .++.|..+...+..+...+|......+.....+.++. .+..+|...++.+.+...+..+. ....+
T Consensus 373 d~----~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd~ 446 (1005)
T KOG2274|consen 373 DD----GYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDDK 446 (1005)
T ss_pred CC----CchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHHH
Confidence 11 1457778888888888888875544444443333321 12334888888888777666331 23345
Q ss_pred HHHHHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHH
Q 005686 431 LSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 431 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~ 508 (683)
+..++..+...+. ...|....++.++++++++... ...+.+..++...+..+. +..+.++..|+.++..+|
T Consensus 447 l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~- 519 (1005)
T KOG2274|consen 447 LIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC- 519 (1005)
T ss_pred HHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc-
Confidence 5556666666665 4567777799999999988754 356777778888877776 456789999999988887
Q ss_pred HhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHh
Q 005686 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLE 587 (683)
Q Consensus 509 ~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~ 587 (683)
....+.+..+.|+..|.....+.+++++..++++|+.++.- .+++.. ..-..+.|..+..+.+.+ +|+.+ ..+-+
T Consensus 520 -~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~a-s~~skI~P~~i~lF~k~s-~DP~V~~~~qd 595 (1005)
T KOG2274|consen 520 -KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAA-SMESKICPLTINLFLKYS-EDPQVASLAQD 595 (1005)
T ss_pred -CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-Chhhhh-hhhcchhHHHHHHHHHhc-CCchHHHHHHH
Confidence 35678899999999999999988888998999999988764 455431 244567788888887776 46654 23445
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHH-hHHhhcCCc
Q 005686 588 CFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIES-LVISLFPNL 666 (683)
Q Consensus 588 ~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~l~~i~p~l 666 (683)
++..+.. ....+.|+...++|.++++++..- |+ .-......+++.++.++++.++++.. ++...||.+
T Consensus 596 ~f~el~q-~~~~~g~m~e~~iPslisil~~~~----~~------~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaV 664 (1005)
T KOG2274|consen 596 LFEELLQ-IAANYGPMQERLIPSLISVLQLNA----DK------APAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAV 664 (1005)
T ss_pred HHHHHHH-HHHhhcchHHHHHHHHHHHHcCcc----cc------cCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHh
Confidence 5555544 223456788889999998887531 11 12346677899999999999988774 577888888
Q ss_pred cccCCCC
Q 005686 667 TWKSPKR 673 (683)
Q Consensus 667 ~~~~~~~ 673 (683)
..|...+
T Consensus 665 ak~tlHs 671 (1005)
T KOG2274|consen 665 AKITLHS 671 (1005)
T ss_pred Hhheeec
Confidence 6665443
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-30 Score=253.75 Aligned_cols=584 Identities=16% Similarity=0.173 Sum_probs=419.1
Q ss_pred CCCCHHhHHHHHHHHHhhcC-----------------CCCHHHHHHHHHHHHH-Hhc-----CCC---hHH-HHHHHhhh
Q 005686 7 WQPQEQGFNEICRLLEQQIS-----------------PSSTADKSQIWQQLQQ-YSQ-----FPD---FNN-YLAFILAR 59 (683)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~~s-----------------~~~~~~r~~A~~~L~~-~~~-----~p~---~~~-~l~~il~~ 59 (683)
-+|++++-......+++... -+-. +|..|=-.|+. ++. .++ ++. .+++-+.
T Consensus 23 ~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~-~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lg- 100 (885)
T KOG2023|consen 23 QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVP-TRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLG- 100 (885)
T ss_pred cCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchh-HHHHhhhhHhccccccccCCChHHHHHHHHHHHhhcc-
Confidence 35666655555555554432 2334 67666666655 321 122 221 2333333
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-------C-cCChHH
Q 005686 60 AEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-------G-IAGWLE 131 (683)
Q Consensus 60 ~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-------~-~~~~~~ 131 (683)
+.++-+|-..++++-..+.+. .- .....+.+.|.+.|.+++......+-.++..|++-. . .....-
T Consensus 101 --d~~~lIr~tvGivITTI~s~~-~~---~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~ 174 (885)
T KOG2023|consen 101 --DASPLIRATVGIVITTIASTG-GL---QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNI 174 (885)
T ss_pred --CchHHHHhhhhheeeeeeccc-cc---ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHH
Confidence 567789998888876655432 11 123456677888888877777777777777776531 1 234466
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc
Q 005686 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 132 l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (683)
++|.+++.++++++..|.-|+.|+..++-.-...+. ..++.++..++...+|.+++||+..+.++..+.+.-
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~--------~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALY--------VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHH--------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999887654443332 236888999999999999999999999999999999
Q ss_pred chhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhh--CccchhhhHHHHHHHHHHhhcCCChH------------
Q 005686 212 PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVNKDTDDD------------ 277 (683)
Q Consensus 212 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~------------ 277 (683)
|+.+.+++.++++.++...+|.+++|.-+||+.|..+++. ..+.+.||++.+++.++..|...+.+
T Consensus 247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES 326 (885)
T ss_pred HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence 9999999999999999999999999999999999999975 56788999999999988765322111
Q ss_pred --------------------------------------------HHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhh
Q 005686 278 --------------------------------------------VALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (683)
Q Consensus 278 --------------------------------------------vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~ 313 (683)
+|.-+..++.-++.. +-+++++.+++.
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---------f~~elL~~l~Pl 397 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---------FGDELLPILLPL 397 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh---------hHHHHHHHHHHH
Confidence 111111111111110 112334444333
Q ss_pred cccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cchhhh
Q 005686 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTL 390 (683)
Q Consensus 314 l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l 390 (683)
+...= ..+.|.+|.++.-+++.+++..-+ ..+|.+
T Consensus 398 Lk~~L------------------------------------------~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeL 435 (885)
T KOG2023|consen 398 LKEHL------------------------------------------SSEEWKVREAGVLALGAIAEGCMQGFVPHLPEL 435 (885)
T ss_pred HHHHc------------------------------------------CcchhhhhhhhHHHHHHHHHHHhhhcccchHHH
Confidence 32100 113488999999999999998854 567889
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhC
Q 005686 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (683)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (683)
+|++.+++.+.. +-+|..+|+.|+.++..... .-.+|+..++..+++.+-|.+.+|+.+||.++..+-+.-...
T Consensus 436 ip~l~~~L~DKk---plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-- 510 (885)
T KOG2023|consen 436 IPFLLSLLDDKK---PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-- 510 (885)
T ss_pred HHHHHHHhccCc---cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch--
Confidence 999999999887 89999999999999987633 334788888899999999999999999999999998866543
Q ss_pred CCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHHhh--HhHHHHHHHHHH
Q 005686 470 HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA--PRLEIILQHLMMAFGKYQ--RRNLRIVYDAIG 545 (683)
Q Consensus 470 ~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~--~~l~~i~~~L~~~l~~~~--~~~~~~~~~~l~ 545 (683)
.-+|+..++..+...++.=..+--.--..|++.+++.+|..+. .|++.+|+-|+...+.-. ++.+-..++|++
T Consensus 511 ---LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClS 587 (885)
T KOG2023|consen 511 ---LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLS 587 (885)
T ss_pred ---hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHH
Confidence 4568888888888877631111122346778888888887774 489999999988887653 456778999999
Q ss_pred HHHHHhccccCchhHHHhhhHHHHHHHhc-------CCCC------Ccch-hhHHhHHHHHHHHhccccccchHH--HHH
Q 005686 546 TLADAVGFELNQPVYLDILMPPLIAKWQQ-------LPNS------DKDL-FPLLECFTSIAQALGAGFTQFAQP--VFQ 609 (683)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~------~~~~-~~~~~~l~~l~~~~g~~f~~~~~~--~~~ 609 (683)
+++.++|..|. ||...+..-++..+++ ...+ +++. ..+++.++.+++.+|....+.+.+ ++.
T Consensus 588 sia~AL~~gF~--P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~ 665 (885)
T KOG2023|consen 588 SIASALGVGFL--PYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLD 665 (885)
T ss_pred HHHHHHhcccc--ccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHH
Confidence 99999999997 6777666555554441 2111 2221 357888999999999977765543 455
Q ss_pred HHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCccccCCCCcceecccC
Q 005686 610 RCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLTWKSPKRKCILTNKR 681 (683)
Q Consensus 610 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~~~~~~~~~~~~~~ 681 (683)
.+++++.+ ..+++|++|+-.+|.+..++.+..-|++..++|.|-.--+-..++|.||+
T Consensus 666 lll~C~~D--------------~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA 723 (885)
T KOG2023|consen 666 LLLQCLQD--------------EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNA 723 (885)
T ss_pred HHHHHhcc--------------CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHH
Confidence 44444443 35789999999999999999888889999999999766666677777765
No 10
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2e-27 Score=236.28 Aligned_cols=520 Identities=13% Similarity=0.163 Sum_probs=369.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc---------
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--------- 85 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~--------- 85 (683)
++++|.+.+++++|.. +|+.|+..|.++++.|+|+..+++++.++ +.++++|+.|++++||.|.+.|+.
T Consensus 3 ~ellqcf~qTldada~-~rt~AE~~Lk~leKqPgFv~all~i~s~d-e~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 3 EELLQCFLQTLDADAG-KRTIAEAMLKDLEKQPGFVMALLHICSKD-EGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred HHHHHHHHHHhccCcc-hhhHHHHHHHHhhcCCcHHHHHHHHHhhc-cCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 5789999999999999 99999999999999999999999999864 689999999999999999999987
Q ss_pred CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 86 l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
..++.|+.+++.++..+.......|.....++..|...+++ ..|+ +.|....++.+++......|+.|+..+++....
T Consensus 81 ek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRw 159 (970)
T COG5656 81 EKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRW 159 (970)
T ss_pred ccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhh
Confidence 33466777777777766666677787777788888888866 8899 999999999999999999999999999988766
Q ss_pred ccccCCCCCCcchhHhhHHHHHHhh---cC-C---CHHHHHHHHHHHHHHHh-ccchhhHH--hHHHHHHHHHhhhC---
Q 005686 165 VLDSDVPGLAECPINIFLPRLLQFF---QS-P---HTSLRKLSLGSVNQFIM-LMPSALFV--SMDQYLQGLFLLSN--- 231 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~~~l---~~-~---~~~vr~~a~~~l~~~~~-~~~~~~~~--~~~~~l~~l~~~~~--- 231 (683)
....+.. .........+|.+.+.- .+ + ..++....++.+..++- .+|..+.. .+..+++..+..++
T Consensus 160 k~ndeq~-di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 160 KYNDEQV-DILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred hccchHh-hHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 5443211 11223444555554432 22 2 33555667777766653 35544332 12223333333222
Q ss_pred -------C-------CCHHHHHHHHHHHHHHHhhCccchh--h----------hHHHHHHHHHHhh----cCC--ChHHH
Q 005686 232 -------D-------PSAEVRKLVCAAFNLLIEVRPSFLE--P----------HLRNLFEYMLQVN----KDT--DDDVA 279 (683)
Q Consensus 232 -------~-------~~~~~~~~~~~~l~~l~~~~~~~~~--~----------~l~~l~~~~~~~~----~~~--~~~vr 279 (683)
| +-.+++++++..+.++..++.+... . .++.++...++.. ++. -.+..
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~~ 318 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDIE 318 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchHH
Confidence 1 1124567788888888776653221 1 1222222222221 111 12234
Q ss_pred HHHhhHHHHhhcc-CCchhhHHhhhhhhHHHH-HhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCC
Q 005686 280 LEACEFWHSYFEA-QLPHENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (683)
Q Consensus 280 ~~a~~~l~~l~~~-~~~~~~~~~~l~~l~~~l-~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d 357 (683)
.+.+.++...|.. ...++.++|+++-++... ++.++.++++++.|+.|++| ++|.+++.-.
T Consensus 319 LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~e-------yirry~df~d---------- 381 (970)
T COG5656 319 LYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDE-------YIRRYYDFFD---------- 381 (970)
T ss_pred HHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHH-------HHHHhcchhc----------
Confidence 5555555554433 446888999999988764 69999999999999888765 5555443221
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHcc-----CCCCChhhHHHHHHHHHHHHhcc--hhhhhhh
Q 005686 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGC--IKGLYPH 430 (683)
Q Consensus 358 d~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~l~~~~--~~~~~~~ 430 (683)
+ ..+.--++..++-.+...-+++++..+++++...++. ++..|.+..++|++.++++.... ...+...
T Consensus 382 -~----g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~ 456 (970)
T COG5656 382 -N----GLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANV 456 (970)
T ss_pred -C----CCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHH
Confidence 0 1133345666766676677778889999999888842 22356889999999999988732 2223333
Q ss_pred HHH-HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Q 005686 431 LSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (683)
Q Consensus 431 ~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (683)
++. +++.+.+.++++.-.+|..||..++++.+.++ ....+..++....+++++++-.|+..|+.||..++.+
T Consensus 457 me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfk-------d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 457 MEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFK-------DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence 333 78899999999999999999999999987775 3456778889999999998889999999999999866
Q ss_pred h--cccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHH
Q 005686 510 A--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKW 572 (683)
Q Consensus 510 ~--~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 572 (683)
. .+.+..|++.+|+.|+.+-+..+.+.+ -.++..++....+++. ||..+++..+.+.+
T Consensus 530 ~q~h~k~sahVp~tmekLLsLSn~feiD~L---S~vMe~fVe~fseELs--pfa~eLa~~Lv~qF 589 (970)
T COG5656 530 EQSHEKFSAHVPETMEKLLSLSNTFEIDPL---SMVMESFVEYFSEELS--PFAPELAGSLVRQF 589 (970)
T ss_pred hhhhHHHHhhhhHHHHHHHHhcccccchHH---HHHHHHHHHHhHHhhc--hhHHHHHHHHHHHH
Confidence 5 567889999999999988776654443 4556666777777765 68888888877743
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-26 Score=228.55 Aligned_cols=592 Identities=16% Similarity=0.192 Sum_probs=430.5
Q ss_pred CHHhHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHh--cCC-ChHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhh
Q 005686 10 QEQGFNEICRLLEQQIS-PSSTADKSQIWQQLQQYS--QFP-DFNNYLAFILARAE--GKSVEIRQAAGLLLKNNLRTAY 83 (683)
Q Consensus 10 ~~~~~~~l~~~l~~~~s-~~~~~~r~~A~~~L~~~~--~~p-~~~~~l~~il~~~~--~~~~~~R~~a~~~l~~~i~~~w 83 (683)
++|.-+++...+..++. |.+. .+..|.+.+..+. +-| ..|+-|+..|.++. .+...+|..+...++-..
T Consensus 84 ~~e~reqVK~~il~tL~~~ep~-~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyic---- 158 (859)
T KOG1241|consen 84 PAEIREQVKNNILRTLGSPEPR-RPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYIC---- 158 (859)
T ss_pred CHHHHHHHHHHHHHHcCCCCCC-ccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHH----
Confidence 45555677666655665 7777 8888888887754 333 35677777666552 333457887777775443
Q ss_pred ccCCHhHHH----HHHHHHhhhhh--cCChHHHHHHHHHHHHHHhhc-----CcCChHHHHHHHHHHhccCChhHHhHHH
Q 005686 84 KSMSPSNQQ----YIKSELLPCLG--AADRHIRSTVGTIVSVVVQLG-----GIAGWLELLQALVTCLDSNDINHMEGAM 152 (683)
Q Consensus 84 ~~l~~~~~~----~i~~~Ll~~l~--~~~~~vr~~~~~~l~~i~~~~-----~~~~~~~l~~~l~~~l~s~~~~~r~~al 152 (683)
..++|+... .+...+.+... +++..||-++..+|..-.... ...+-+=+++...+..++++..++.+++
T Consensus 159 e~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~ 238 (859)
T KOG1241|consen 159 EDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAF 238 (859)
T ss_pred ccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHH
Confidence 346666443 33344444332 568899988877776554331 1223344677777888899999999999
Q ss_pred HHHHHHHhhchhccccCCCCCCcchh-HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc-c--------------chh--
Q 005686 153 DALSKICEDIPQVLDSDVPGLAECPI-NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-M--------------PSA-- 214 (683)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~-~--------------~~~-- 214 (683)
.||.++...+.+++.+ ++ ..+++.-+..+.+++.+|...+++....+++- + |+.
T Consensus 239 ~ClvkIm~LyY~~m~~--------yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~ 310 (859)
T KOG1241|consen 239 QCLVKIMSLYYEFMEP--------YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSK 310 (859)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhh
Confidence 9999998877766542 33 44888888889999999999999988877632 1 110
Q ss_pred -h-HHhHHHHHHHHHhhhC-------CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhH
Q 005686 215 -L-FVSMDQYLQGLFLLSN-------DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (683)
Q Consensus 215 -~-~~~~~~~l~~l~~~~~-------~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~ 285 (683)
+ ...+..++|.|++++. ++++...+++-.||.-+++..++.+.+| .++++-+-++++++.-|..|.-.
T Consensus 311 ~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~---Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 311 YFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPH---VLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred HHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhh---hHHHHHHhcCCcchhhhhHHHHH
Confidence 0 1123355666666542 2456789999999999999988887764 45555567889999999999999
Q ss_pred HHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccc
Q 005686 286 WHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW 365 (683)
Q Consensus 286 l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~ 365 (683)
++++.+.+ ....+.|+..+.+|.++..+.++. .
T Consensus 388 FGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s---------------------------------------------l- 420 (859)
T KOG1241|consen 388 FGSILEGP-EPDKLTPIVIQALPSIINLMSDPS---------------------------------------------L- 420 (859)
T ss_pred HHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch---------------------------------------------h-
Confidence 99987763 356678899999999888776321 1
Q ss_pred cHHHHHHHHHHHHHhhcCc-----cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhh---------hhhhH
Q 005686 366 NLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG---------LYPHL 431 (683)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~---------~~~~~ 431 (683)
.+|..+++++++++..+++ ...+..++.+.+.+.+ + +++-..+++++..+++++.+. ..+++
T Consensus 421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-e---Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y 496 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-E---PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY 496 (859)
T ss_pred hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-C---chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH
Confidence 2557788999999988865 3345566667777765 3 799999999999999877431 23567
Q ss_pred HHHHHHHhhccC--C-CChhHHHHHHHHHHHHHHHHHhhh----------------------------------------
Q 005686 432 SEIVAFLIPLLD--D-KFPLIRSISCWTLSRFSKFIVQDI---------------------------------------- 468 (683)
Q Consensus 432 ~~l~~~l~~~l~--d-~~~~vr~~a~~~l~~l~~~~~~~~---------------------------------------- 468 (683)
+.++..+++.-+ | .....|.+|..+|+.+.++.+...
T Consensus 497 ~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc 576 (859)
T KOG1241|consen 497 EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLC 576 (859)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH
Confidence 777777776554 3 457889999999999887644211
Q ss_pred ---------CCCcchhhHHHHHHHHHHHhcc-CCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHh-HH
Q 005686 469 ---------GHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NL 537 (683)
Q Consensus 469 ---------~~~~~~~~~~~~l~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~-~~ 537 (683)
.+.+..++.+.++..+++.++. .+..|.+.|..|++.+++.++..+..|.+.+.+.|...+++.++. +.
T Consensus 577 ~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc 656 (859)
T KOG1241|consen 577 NTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVC 656 (859)
T ss_pred HHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 0123567788899999999987 456789999999999999999999999999999999999776554 55
Q ss_pred HHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcchh-hHHhHHHHHHHHhccccccchHHHHHHHHHHHH
Q 005686 538 RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLF-PLLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (683)
Q Consensus 538 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~ 616 (683)
..+...+|.++++++.++. ||.+.+|..|++.+.+.. -++++. .++.|+|.|+-++|.+|.+|+..+++. |+
T Consensus 657 ~~aVglVgdl~raL~~~i~--py~d~~mt~Lvq~Lss~~-~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~l----lq 729 (859)
T KOG1241|consen 657 AAAVGLVGDLARALEDDIL--PYCDELMTVLVQCLSSPN-LHRNVKPAILSVFGDIALAIGADFEPYLEMVMPL----LQ 729 (859)
T ss_pred HHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHccCcc-ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHH----HH
Confidence 6899999999999999997 899999999998877532 344453 689999999999999999999999984 44
Q ss_pred HHHHHhhCCc-ccCCCCCchHHHHHHHHHHHHHHHhccc-----hHHhHHhhcCCccccCCCCcc
Q 005686 617 TQQLAKVDSV-AAGAQYDKEFVVCCLDLLSGLAEGLGSG-----IESLVISLFPNLTWKSPKRKC 675 (683)
Q Consensus 617 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~l~~i~p~l~~~~~~~~~ 675 (683)
+.+....|+. +...+|..++|+.+++++.++.+++|.+ ..||++.|+.++..-...+++
T Consensus 730 ~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~ 794 (859)
T KOG1241|consen 730 QASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDV 794 (859)
T ss_pred HHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCccc
Confidence 4442233432 1223356679999999999999999942 459999999888766666655
No 12
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.1e-26 Score=226.35 Aligned_cols=601 Identities=16% Similarity=0.210 Sum_probs=380.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc-----CCHhHH
Q 005686 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (683)
Q Consensus 17 l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~-----l~~~~~ 91 (683)
+++.|+++.|+|.. ++|.|+++|++.+++|+|...|..+.. +++.+-.+|-+|++.+||.|.+.|+. +++|.|
T Consensus 2 vvq~Lq~Ats~d~~-v~k~AE~qLr~WEtqPGF~~~L~sI~l-~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK 79 (978)
T KOG1993|consen 2 VVQVLQQATSQDHI-VVKPAEAQLRQWETQPGFFSKLYSIFL-SKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEK 79 (978)
T ss_pred HHHHHHHhcCCCcc-cchhHHHHHHhhccCCcHHHHHHHHHh-ccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHH
Confidence 57899999999999 999999999999999999999999987 45778999999999999999999985 899999
Q ss_pred HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccC----ChhHHhHHHHHHHHHHhhchhc-c
Q 005686 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQV-L 166 (683)
Q Consensus 92 ~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~----~~~~r~~al~~l~~l~~~~~~~-~ 166 (683)
..||..++..+.+++..+-.+.|.+++.||+.++|..||++++.+.+.+++. |.......+..+..+.+..+.. +
T Consensus 80 ~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 80 DFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999988876 7778888888999988887653 1
Q ss_pred ccCCCCCCcchhHhhHHHHHHhhcCC------------CH-------HHHHHHHHHHHHHHhcc---ch--hhHHhHHHH
Q 005686 167 DSDVPGLAECPINIFLPRLLQFFQSP------------HT-------SLRKLSLGSVNQFIMLM---PS--ALFVSMDQY 222 (683)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~~l~~~------------~~-------~vr~~a~~~l~~~~~~~---~~--~~~~~~~~~ 222 (683)
... +..|......+++.+...+-++ +. .+-..+++++..++-+. |. .+.+.+.++
T Consensus 160 ~a~-rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F 238 (978)
T KOG1993|consen 160 LAD-RKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQF 238 (978)
T ss_pred hhh-hHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH
Confidence 111 1111112233333221111111 11 22234556666554321 21 133333344
Q ss_pred HHH----HHhhhCCCC----HHHHHHH----HHHHHHHHhhCccchhh--hHHHHHHHHHHhhcCC-------------C
Q 005686 223 LQG----LFLLSNDPS----AEVRKLV----CAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDT-------------D 275 (683)
Q Consensus 223 l~~----l~~~~~~~~----~~~~~~~----~~~l~~l~~~~~~~~~~--~l~~l~~~~~~~~~~~-------------~ 275 (683)
+.. +...++... .++.+.. .+++..+.+..|-.+.. ..+..+++.+...-++ -
T Consensus 239 ~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~f 318 (978)
T KOG1993|consen 239 LELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSF 318 (978)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccH
Confidence 433 111222111 1222222 34455566665544433 2233333333222111 1
Q ss_pred hHHHHHHhhHHHHhh--cc--C------------Cchh---h-H-----HhhhhhhHHHHH-hhcccChhhhhhhhhccc
Q 005686 276 DDVALEACEFWHSYF--EA--Q------------LPHE---N-L-----KEFLPRLVPVLL-SNMIYADDDESLVEAEED 329 (683)
Q Consensus 276 ~~vr~~a~~~l~~l~--~~--~------------~~~~---~-~-----~~~l~~l~~~l~-~~l~~~~~d~~~~~~~~~ 329 (683)
++....++..+..+. .+ . ...+ . . .+-+..+...++ .++..+++|.|.|..||+
T Consensus 319 e~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE 398 (978)
T KOG1993|consen 319 EEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPE 398 (978)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChH
Confidence 222233333333221 11 0 0001 0 0 122234444454 345667788888876654
Q ss_pred CCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCC-----CC
Q 005686 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG-----DE 404 (683)
Q Consensus 330 e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~-----~~ 404 (683)
+ +. .++...+-.+++|-+|...+..+-..+++-+.|.++..+.+..+... +-
T Consensus 399 ~-------~~----------------~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l 455 (978)
T KOG1993|consen 399 G-------WV----------------LEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDL 455 (978)
T ss_pred H-------hh----------------hhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchH
Confidence 3 11 01111224458999999999999999988777777777765554321 00
Q ss_pred -ChhhHHHHHHHHHHHHhcchh--hhhhhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHH
Q 005686 405 -AWKDREAAVLALGAIAEGCIK--GLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV 480 (683)
Q Consensus 405 -~~~~r~aal~~l~~l~~~~~~--~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 480 (683)
..-.+.|...++|.-+....+ ++...+ ..++|.+. .-.+..-.+|+..+|.+|.+.+.-. ..+..+.+
T Consensus 456 ~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~-------~~e~k~l~ 527 (978)
T KOG1993|consen 456 TALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQ-------KLELKPLL 527 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheec-------hHhHHHHH
Confidence 123455666666655554433 223322 22344333 1112345678889999999987322 23445667
Q ss_pred HHHHHHHhccC-CccHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHHHHhhHhH-HHHHHHHHHHHHHHhcccc
Q 005686 481 LMGLLKRILDT-NKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFEL 555 (683)
Q Consensus 481 l~~l~~~l~d~-~~~v~~~a~~al~~l~~~~---~~~l~~~l~~i~~~L~~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~ 555 (683)
..++.+.++|. +-.|+..++.++...+++. .+.+.||++.+...+.+.+...++-. +..++..++.++..+++.+
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I 607 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI 607 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 78888888887 5789999999999999876 57899999999999999999876644 4489999999999999988
Q ss_pred CchhHHHhhhHHHHHHHhcCCCCCcch--hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCC
Q 005686 556 NQPVYLDILMPPLIAKWQQLPNSDKDL--FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYD 633 (683)
Q Consensus 556 ~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 633 (683)
. ||...+.+.+-..|+... ...+ .+++.++..++.++|..-.++-+-++| +++-.. |++...+.
T Consensus 608 ~--P~~~~ivq~lp~LWe~s~--~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~p----VIel~~----D~~sP~hv-- 673 (978)
T KOG1993|consen 608 A--PYASTIVQYLPLLWEESE--EEPLLRCALLATLRNLVNALGAQSFEFYPFLYP----VIELST----DPSSPEHV-- 673 (978)
T ss_pred h--HHHHHHHHHHHHHHhhhc--cCcHHHHHHHHHHHHHHHHhccCCccchHHHHH----HHHHhc----CCCCCcee--
Confidence 6 799999988888887643 2233 467899999999999865555454555 333221 33221111
Q ss_pred chHHHHHHHHHHHHHHHhcc---chHHhHHhhcCCc
Q 005686 634 KEFVVCCLDLLSGLAEGLGS---GIESLVISLFPNL 666 (683)
Q Consensus 634 ~~~~~~a~~~l~~l~~~~~~---~~~~~l~~i~p~l 666 (683)
-+.+-.++.|+........ .|...+|.++|.+
T Consensus 674 -~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~i 708 (978)
T KOG1993|consen 674 -YLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYII 708 (978)
T ss_pred -ehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 1345567777776655532 2333344444444
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.95 E-value=1.4e-23 Score=214.14 Aligned_cols=548 Identities=14% Similarity=0.185 Sum_probs=375.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~ 141 (683)
+.|...|++|..=|-+.+++.-.+++.+.-..+...++++|.+.++.|++.+..|++.++.+.+......+.+.+...+-
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~ 95 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNML 95 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhc
Confidence 77889999999999999988877788888888888999999999999999999999988877655555555555555433
Q ss_pred cCChhHHhH------------------------------------------------HHHHHHHHHhhchhccccCCCCC
Q 005686 142 SNDINHMEG------------------------------------------------AMDALSKICEDIPQVLDSDVPGL 173 (683)
Q Consensus 142 s~~~~~r~~------------------------------------------------al~~l~~l~~~~~~~~~~~~~~~ 173 (683)
++....|.. ++..++.+...++..+.
T Consensus 96 s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~------ 169 (1233)
T KOG1824|consen 96 SGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP------ 169 (1233)
T ss_pred cchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc------
Confidence 333333333 33333333333222211
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCC-CHHHHHHHHHHHHHHHhhC
Q 005686 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVR 252 (683)
Q Consensus 174 ~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~ 252 (683)
.....++..++..+.++...||+.|+.+++.+....+...+..+ +..+..-+..+ ........+++|+.++...
T Consensus 170 --~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~l---i~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 170 --NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVEL---IEHLLKGLSNRTQMSATRTYIQCLAAICRQA 244 (1233)
T ss_pred --chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHH---HHHHHhccCCCCchHHHHHHHHHHHHHHHHh
Confidence 12233444445555666778999999999999988876665443 55555544432 3334456788999999999
Q ss_pred ccchhhhHHHHHHHHHHhh---cCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhccc
Q 005686 253 PSFLEPHLRNLFEYMLQVN---KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (683)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~---~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~ 329 (683)
+..+..|++.+++++.+.+ +..+++.|.++++.+..+... .+..+.||.+.++..++.++++.+.-....++|++
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed 322 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDED 322 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh--ChhhhcccchHHHHHHHHHhccCCCCCCCCccchh
Confidence 9999999999999888776 667889999999999998876 67788999999999999998875421111111111
Q ss_pred CC-CCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cchhh----------------
Q 005686 330 ES-LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPT---------------- 389 (683)
Q Consensus 330 e~-~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~---------------- 389 (683)
+. .++.+.+ +..++..||++..|.+|++|+.|+..+...-.+ .+.+.
T Consensus 323 ~~~~ed~eDd-------------e~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnV 389 (1233)
T KOG1824|consen 323 AMFLEDEEDD-------------EQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENV 389 (1233)
T ss_pred hhhhhccccc-------------hhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhH
Confidence 10 1111000 000111234557899999999999876543221 11111
Q ss_pred ---hHHHHHHHHccC----------C------------------------------CCChhhHHHHHHHHHHHHhcchhh
Q 005686 390 ---LMPVIQAKLSAS----------G------------------------------DEAWKDREAAVLALGAIAEGCIKG 426 (683)
Q Consensus 390 ---l~~~l~~~l~~~----------~------------------------------~~~~~~r~aal~~l~~l~~~~~~~ 426 (683)
++......+.+. + +.+.+.|..++..|..+....++.
T Consensus 390 k~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~ 469 (1233)
T KOG1824|consen 390 KADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGA 469 (1233)
T ss_pred HHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcch
Confidence 122222222110 0 112445666777777777777777
Q ss_pred hhhhHHHHHHHHhhccCCCCh--hHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHH
Q 005686 427 LYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFA 504 (683)
Q Consensus 427 ~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~ 504 (683)
..++++.++|.+...|+|.+. ..+..++ +.+...+... +|+.+.+++..+.+.+.....|+-+.+...|+....
T Consensus 470 l~~~~~slvpgI~~~l~DkSsss~~ki~~L---~fl~~~L~s~-~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~ 545 (1233)
T KOG1824|consen 470 LAQHIPSLVPGIIYSLNDKSSSSNLKIDAL---VFLYSALISH-PPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQ 545 (1233)
T ss_pred hhhcccccchhhhhhcCCccchHHHHHHHH---HHHHHHHhcC-ChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHH
Confidence 788999999999999998643 3344343 3333333221 344678889999999999999999999999999999
Q ss_pred HHHHHhc-------ccchHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcC
Q 005686 505 TLEEEAA-------EELAPRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL 575 (683)
Q Consensus 505 ~l~~~~~-------~~l~~~l~~i~~~L~~~l~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 575 (683)
.+++... -...||+..++...++.+...+ .++.+.++.|+|-++...|.... ..++..+|.+.+++++
T Consensus 546 ~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~n- 622 (1233)
T KOG1824|consen 546 QLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLG--NELPRTLPILLERLGN- 622 (1233)
T ss_pred HHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhc-
Confidence 9988763 2467899999888888887653 35677999999999999996554 5788888888888774
Q ss_pred CCCCcchhhHHhHHHHHHHHh-ccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccc
Q 005686 576 PNSDKDLFPLLECFTSIAQAL-GAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG 654 (683)
Q Consensus 576 ~~~~~~~~~~~~~l~~l~~~~-g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 654 (683)
+.....+++++..|+..- ..+..|-+..+++.+...+.... +.+|..++.++..++++++..
T Consensus 623 ---EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~--------------r~lr~~~l~a~~~L~~~~~~~ 685 (1233)
T KOG1824|consen 623 ---EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ--------------RALRLATLTALDKLVKNYSDS 685 (1233)
T ss_pred ---hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcc
Confidence 222346777888887642 22566888888888887776543 347888999999999999988
Q ss_pred hHHhH
Q 005686 655 IESLV 659 (683)
Q Consensus 655 ~~~~l 659 (683)
+.+++
T Consensus 686 ~~~~~ 690 (1233)
T KOG1824|consen 686 IPAEL 690 (1233)
T ss_pred ccHHH
Confidence 77663
No 14
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.5e-21 Score=195.18 Aligned_cols=604 Identities=17% Similarity=0.223 Sum_probs=371.7
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHH
Q 005686 15 NEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (683)
Q Consensus 15 ~~l~~~l~~~~s~--~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~ 92 (683)
+.+.|++.+...| |+. .|+||.+++++++..|.+|..+++++. +++.++.+|+.+.+.|-..++..+...+...+.
T Consensus 3 ddiEqav~a~ndp~vdsa-~KqqA~~y~~qiKsSp~aw~Icie~l~-~~ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSA-TKQQAIEYLNQIKSSPNAWEICIELLI-NETSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred hHHHHHHHhhCCCcccHH-HHHHHHHHHHhhcCCccHHHHHHHHHH-hhcccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 4566777777765 778 999999999999999999999999998 446889999999999999998888889999999
Q ss_pred HHHHHHhhhhh-----cC----ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 005686 93 YIKSELLPCLG-----AA----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (683)
Q Consensus 93 ~i~~~Ll~~l~-----~~----~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 163 (683)
.+|..++..+. ++ .+-++++++++++.+.-.+++..|+.++..++..+.-+.. ..++....+++-...
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~---~~~~dfflkvllaId 157 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSA---ISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccc---hhhHHHHHHHHHHhh
Confidence 99999988763 22 6789999999999999999999999999999988864331 113333333333333
Q ss_pred hccccC-C-------------CCCC-cchhHhhHHHHHHh---hcCC-CHHHHHHHHHHHHHHHhccchhhHHhHHHHHH
Q 005686 164 QVLDSD-V-------------PGLA-ECPINIFLPRLLQF---FQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQ 224 (683)
Q Consensus 164 ~~~~~~-~-------------~~~~-~~~~~~i~~~l~~~---l~~~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~ 224 (683)
.++.+. + +..+ ++-++++.....+. -+.. ++.+-..++.|++.+++|+.-.+.. -+.+++
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~n 236 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLN 236 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHH
Confidence 322110 0 0000 11223333333333 2334 8889999999999999987644332 123455
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhh----------------------------------------------
Q 005686 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP---------------------------------------------- 258 (683)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------------------------------------------- 258 (683)
.++..++ -+++|.++|.|+..+++...+.+.+
T Consensus 237 LLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~ 314 (980)
T KOG2021|consen 237 LLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIII 314 (980)
T ss_pred HHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhH
Confidence 5555554 3566777777766655543222211
Q ss_pred -----------------hHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc----CCchhhHHhhhhhhHHHHHhhcccC
Q 005686 259 -----------------HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYA 317 (683)
Q Consensus 259 -----------------~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~l~~l~~~l~~~l~~~ 317 (683)
.+..+++++++.+.+.++++-...+.||+.+... +......+.++.+++..+.+.+++.
T Consensus 315 s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicyd 394 (980)
T KOG2021|consen 315 SQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYD 394 (980)
T ss_pred hhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhcc
Confidence 1112333344444444444444444444443211 1112222334455555555555543
Q ss_pred hhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHH
Q 005686 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397 (683)
Q Consensus 318 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~ 397 (683)
+.. .|+ ++. .+++++...-.+|+.....+++++..-++-++..+-.-+...
T Consensus 395 emy--~nd--------------------------dn~-tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~a 445 (980)
T KOG2021|consen 395 EMY--FND--------------------------DNV-TGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAA 445 (980)
T ss_pred HHh--hcc--------------------------cCC-CCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 210 010 010 111122223357888888888888877766666666666666
Q ss_pred HccCCCCChhhHHHHHHHHHHHHhcchhh--------hh--hhHHHHHHHHhh--ccCCCChhHHHHHHHHHHHHHHHHH
Q 005686 398 LSASGDEAWKDREAAVLALGAIAEGCIKG--------LY--PHLSEIVAFLIP--LLDDKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 398 l~~~~~~~~~~r~aal~~l~~l~~~~~~~--------~~--~~~~~l~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
+.+..+.+|..-+.|++.+..++++.+.. +. ..+.++++.+.. .+.++|+.|.-.-+..+-++.+.+.
T Consensus 446 l~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~ 525 (980)
T KOG2021|consen 446 LMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFS 525 (980)
T ss_pred HhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHh
Confidence 66544566999999999999999987421 11 223345554444 3457899999999999999988886
Q ss_pred hhhCCCcchhhHHHHHHHHHH--HhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh------hH---
Q 005686 466 QDIGHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY------QR--- 534 (683)
Q Consensus 466 ~~~~~~~~~~~~~~~l~~l~~--~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~------~~--- 534 (683)
. ..++++-++..++. .+.+.+..||.+|...+.++++.++..+.||++.++..+-..+... ++
T Consensus 526 ~------esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~l 599 (980)
T KOG2021|consen 526 T------ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNL 599 (980)
T ss_pred c------chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCcccccc
Confidence 4 35566666666653 4566788999999999999999999999999999999998888321 11
Q ss_pred ---hHHHHHHHHHHHHHHHhc--cccCchhHHHhhhHHHHHHH-----h-cC-CCCCcch-----hhHHhHHHHHHHHhc
Q 005686 535 ---RNLRIVYDAIGTLADAVG--FELNQPVYLDILMPPLIAKW-----Q-QL-PNSDKDL-----FPLLECFTSIAQALG 597 (683)
Q Consensus 535 ---~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~l~~~~-----~-~~-~~~~~~~-----~~~~~~l~~l~~~~g 597 (683)
+.+..+++++|.++..-. .+. +..|+..++.+++... . +. ++++... ...+-+++.+++...
T Consensus 600 t~fddqlyIfEtiGviI~l~n~paE~-qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~ 678 (980)
T KOG2021|consen 600 TIFDDQLYIFETIGVIITLNNSPAEL-QAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFH 678 (980)
T ss_pred ccccccceeeecceEEEeCCCCCHHH-HHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhccc
Confidence 234578899998876421 111 2346666665433211 1 11 2122211 122333444444332
Q ss_pred ccccc-chHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCcc
Q 005686 598 AGFTQ-FAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLT 667 (683)
Q Consensus 598 ~~f~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~ 667 (683)
....+ --...+-...++++.....-.. .....++|...-..+++++..+|+..-||+|+++..|.
T Consensus 679 ~rlvt~~qvg~~~vf~~~ldvil~~ls~-----f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL 744 (980)
T KOG2021|consen 679 IRLVTENQVGNMVVFSNILDVILVTLSF-----FNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLL 744 (980)
T ss_pred ccCcchhcccHHHHHHHHHHHHHHHHhh-----ccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHH
Confidence 21100 0011111122222222111000 01234577777888999999999999999999986653
No 15
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.91 E-value=2.2e-19 Score=174.43 Aligned_cols=589 Identities=14% Similarity=0.131 Sum_probs=394.2
Q ss_pred HhHHHHHH-HHHhhcCCCCHHHHHHHHHHHHHHhc---CCChHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhhcc
Q 005686 12 QGFNEICR-LLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAE--GKSVEIRQAAGLLLKNNLRTAYKS 85 (683)
Q Consensus 12 ~~~~~l~~-~l~~~~s~~~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~--~~~~~~R~~a~~~l~~~i~~~w~~ 85 (683)
|.-+++.. +++.+.||.+. .-..|.+.+..+.. ....|+-|+..+..+. ++....+..+...+.+... +
T Consensus 90 E~k~qvK~~al~aL~s~epr-~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce----s 164 (858)
T COG5215 90 ESKEQVKGMALRALKSPEPR-FCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE----S 164 (858)
T ss_pred HHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh----c
Confidence 33345533 56666678877 77888888877643 2346777777776542 4566677777777765543 3
Q ss_pred CCHhHHHHHHHHHhh-----hhh-cCChHHHHHHHHHHHH-HH--hhc--CcCChHHHHHHHHHHhccCChhHHhHHHHH
Q 005686 86 MSPSNQQYIKSELLP-----CLG-AADRHIRSTVGTIVSV-VV--QLG--GIAGWLELLQALVTCLDSNDINHMEGAMDA 154 (683)
Q Consensus 86 l~~~~~~~i~~~Ll~-----~l~-~~~~~vr~~~~~~l~~-i~--~~~--~~~~~~~l~~~l~~~l~s~~~~~r~~al~~ 154 (683)
.+|+..-..-+.++- .++ +++..+|-.+-.++.. +. +.. ...+-+-+++...+..++++..+..+++-|
T Consensus 165 ~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgC 244 (858)
T COG5215 165 EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGC 244 (858)
T ss_pred cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHH
Confidence 455444333333333 333 5688899887777765 32 211 334445577888888889999999999999
Q ss_pred HHHHHhhchhccccCCCCCCcchhHh-hHHHHHHhhcCCCHHHHHHHHHHHHHHHhc-cchh---------------h-H
Q 005686 155 LSKICEDIPQVLDSDVPGLAECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPSA---------------L-F 216 (683)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~-~~~~---------------~-~ 216 (683)
|..+...+..++. .+++. +......++.+++.+|...|++....+++. +... + .
T Consensus 245 l~kim~LyY~fm~--------~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~ 316 (858)
T COG5215 245 LNKIMMLYYKFMQ--------SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFAR 316 (858)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHH
Confidence 9998876665443 23333 444556778999999999999988777642 2110 0 0
Q ss_pred HhHHHHHHHHHhhhC-------CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHh
Q 005686 217 VSMDQYLQGLFLLSN-------DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (683)
Q Consensus 217 ~~~~~~l~~l~~~~~-------~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 289 (683)
.....++|.+++++. ++++++...+-.||.-+++..++.+. ...+.++-+-+.++++.-|..|.-.++++
T Consensus 317 aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~---~pVl~FvEqni~~~~w~nreaavmAfGSv 393 (858)
T COG5215 317 AAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM---RPVLGFVEQNIRSESWANREAAVMAFGSV 393 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH---HHHHHHHHHhccCchhhhHHHHHHHhhhh
Confidence 113345666666542 24567888889999888887776543 33666666778888888899999999998
Q ss_pred hccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 005686 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (683)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~ 369 (683)
.+.+ ......+++++.+|.+...+.++ .-| +..
T Consensus 394 m~gp-~~~~lT~~V~qalp~i~n~m~D~---------------------------------------------~l~-vk~ 426 (858)
T COG5215 394 MHGP-CEDCLTKIVPQALPGIENEMSDS---------------------------------------------CLW-VKS 426 (858)
T ss_pred hcCc-cHHHHHhhHHhhhHHHHHhcccc---------------------------------------------eee-hhh
Confidence 7763 34456677888888876655421 112 455
Q ss_pred HHHHHHHHHHhhcCccch--hhhHHHHHHHHcc--CCCCChhhHHHHHHHHHHHHhcchh-------hhhhhHHHHHHHH
Q 005686 370 CSAAALDVLSNVFGDEIL--PTLMPVIQAKLSA--SGDEAWKDREAAVLALGAIAEGCIK-------GLYPHLSEIVAFL 438 (683)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~--~~l~~~l~~~l~~--~~~~~~~~r~aal~~l~~l~~~~~~-------~~~~~~~~l~~~l 438 (683)
.+++|++.++.+...-+- .++.+.+..++.. .+ ++....+.+.+-.+..+..+ .+.++...++..+
T Consensus 427 ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~---p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 427 TTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC---PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred HHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc---chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 678889999888754221 2344444443322 23 67777777777777776643 2355666666666
Q ss_pred hhcc--CCCChhHHHHHHHHHHHHHHHHHhhh------------------------------------------------
Q 005686 439 IPLL--DDKFPLIRSISCWTLSRFSKFIVQDI------------------------------------------------ 468 (683)
Q Consensus 439 ~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~------------------------------------------------ 468 (683)
++.- .+.+...|.++..+||.+..+++..+
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~ai 583 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAI 583 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6643 25666788888999998877655321
Q ss_pred ---CCCcchhhHHHHHHHHHHHhccCCc-cHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 005686 469 ---GHQNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAI 544 (683)
Q Consensus 469 ---~~~~~~~~~~~~l~~l~~~l~d~~~-~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l 544 (683)
++.+..+.-++++..+++.|...++ .+-.....+|+.+...+++.+..|++.+++.|.+.++..+..+...+...+
T Consensus 584 ir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglv 663 (858)
T COG5215 584 IRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLV 663 (858)
T ss_pred HHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHH
Confidence 1122344556677777787776643 456677888888888889999999999999999999777777777899999
Q ss_pred HHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcchh-hHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhh
Q 005686 545 GTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLF-PLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (683)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~ 623 (683)
|.++.++|.+|. +|.+.+|..+.+.+.+.. .++++. .++.|++.|+-++|.+|.+|++.+|-.+- +.+ +.
T Consensus 664 gdlantl~~df~--~y~d~~ms~LvQ~lss~~-~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~q----qas--~~ 734 (858)
T COG5215 664 GDLANTLGTDFN--IYADVLMSSLVQCLSSEA-THRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQ----QAS--EL 734 (858)
T ss_pred HHHHHHhhhhHH--HHHHHHHHHHHHHhcChh-hccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHh--cc
Confidence 999999999997 799999999999887532 456664 57899999999999999999999887433 222 11
Q ss_pred CCccc---CCCCCchHHHHHHHHHHHHHHHhccc---hHHhHHhhcCCccccCCCCcc
Q 005686 624 DSVAA---GAQYDKEFVVCCLDLLSGLAEGLGSG---IESLVISLFPNLTWKSPKRKC 675 (683)
Q Consensus 624 ~~~~~---~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~l~~i~p~l~~~~~~~~~ 675 (683)
||... ..++.+..++...+++-+|..++++. ..||+..++..+..-..+|++
T Consensus 735 ~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~ 792 (858)
T COG5215 735 DPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNG 792 (858)
T ss_pred CCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCcc
Confidence 22111 11123344556666777777777743 558888888777644444444
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.90 E-value=8.8e-19 Score=179.63 Aligned_cols=563 Identities=16% Similarity=0.198 Sum_probs=393.9
Q ss_pred CCCCHHHHHHHHHHHHHHh-cCCC-hHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHh--------------------
Q 005686 26 SPSSTADKSQIWQQLQQYS-QFPD-FNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTA-------------------- 82 (683)
Q Consensus 26 s~~~~~~r~~A~~~L~~~~-~~p~-~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~-------------------- 82 (683)
+.+.+ +++-|-+.|.-+. +-++ -+..+.+-|+++ -+..++.|-.+++.||..+.+.
T Consensus 58 D~ngE-VQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l 136 (1233)
T KOG1824|consen 58 DKNGE-VQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKL 136 (1233)
T ss_pred ccCcH-HHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHH
Confidence 45666 9999999988643 3222 233333333322 1345566666666666555332
Q ss_pred ---------------------------hccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHH
Q 005686 83 ---------------------------YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQA 135 (683)
Q Consensus 83 ---------------------------w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~ 135 (683)
+..+-++....+...++..+.++...||+.++.+++.++...+..-+.+++..
T Consensus 137 ~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~ 216 (1233)
T KOG1824|consen 137 KQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEH 216 (1233)
T ss_pred HHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 11222334455555566666677788999999999999998888889999999
Q ss_pred HHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhh---cCCCHHHHHHHHHHHHHHHhcc
Q 005686 136 LVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF---QSPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 136 l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l---~~~~~~vr~~a~~~l~~~~~~~ 211 (683)
+...+... ++......+.+++.+++..+..+..+ .+.++|.+.++. +..+.+.|+..++++..+....
T Consensus 217 Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h--------~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 217 LLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSH--------LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC 288 (1233)
T ss_pred HHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcc--------cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence 99988654 45667788999999999988877654 578889999888 5577899999999999999999
Q ss_pred chhhHHhHHHHHHHHHhhhC-C---------------------------------CCHHHHHHHHHHHHHHHhhCccchh
Q 005686 212 PSALFVSMDQYLQGLFLLSN-D---------------------------------PSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 212 ~~~~~~~~~~~l~~l~~~~~-~---------------------------------~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
|..+.++.+++++.+++.+. | -.|.||.++.+|+..++....+.+.
T Consensus 289 p~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~ 368 (1233)
T KOG1824|consen 289 PKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLP 368 (1233)
T ss_pred hhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHH
Confidence 99999998888887775321 1 0167999999999999999988888
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCch-------------------hhHHhhhhhhHHHHHhhcccCh
Q 005686 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPH-------------------ENLKEFLPRLVPVLLSNMIYAD 318 (683)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~-------------------~~~~~~l~~l~~~l~~~l~~~~ 318 (683)
...+.+-+.++..++..++.|+...+..+..+...-..+ ..+..-.+.++..+-+.+..
T Consensus 369 ~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~-- 446 (1233)
T KOG1824|consen 369 DFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLRE-- 446 (1233)
T ss_pred HHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhh--
Confidence 888888888888899989999998888877765541000 11111111222222222110
Q ss_pred hhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cchhhhHHHHH
Q 005686 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQ 395 (683)
Q Consensus 319 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~ 395 (683)
.....|..+...|..+...+++ +..+.++|.+.
T Consensus 447 --------------------------------------------ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~ 482 (1233)
T KOG1824|consen 447 --------------------------------------------KSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGII 482 (1233)
T ss_pred --------------------------------------------ccccchhhHHHHHHHHHHhCcchhhhcccccchhhh
Confidence 0011355566677777777765 56778888888
Q ss_pred HHHccCCCCChhhHHHHHHHHH-HHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC---C
Q 005686 396 AKLSASGDEAWKDREAAVLALG-AIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH---Q 471 (683)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~-~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~ 471 (683)
..+.+.+. ....+.-++..+. .++.+.++.|.|+++.+.|.+..+..|+-..|-..|+.+.+++++++.+. .+ .
T Consensus 483 ~~l~DkSs-ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl-~~~~~~ 560 (1233)
T KOG1824|consen 483 YSLNDKSS-SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL-QPPSSF 560 (1233)
T ss_pred hhcCCccc-hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc-CCCccC
Confidence 88876431 1445566665554 45555578889999999999999999999999999999999999998764 23 4
Q ss_pred cchhhHHHHHHHHHHHhc--cCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q 005686 472 NGREQFEKVLMGLLKRIL--DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (683)
Q Consensus 472 ~~~~~~~~~l~~l~~~l~--d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (683)
...+|+.+++...++.+. |.+.+||+.|..+++.++..+++.+...++.+++.++..+++ +..+..++.++..++.
T Consensus 561 d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~ 638 (1233)
T KOG1824|consen 561 DASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAM 638 (1233)
T ss_pred CCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHh
Confidence 567899999999888886 557899999999999999999988888999999998888875 3455588888888777
Q ss_pred HhccccCchhHHHhhhHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhccccccchH-HHHHHHHHHHHHHHHHhhCCccc
Q 005686 550 AVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQ-PVFQRCINIIQTQQLAKVDSVAA 628 (683)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~f~~~~~-~~~~~l~~~l~~~~~~~~~~~~~ 628 (683)
+ +-.+...+.+..+++.+.+-+.+.. +.-...++.++..+.+..|..+..++- -++..+..++..
T Consensus 639 S-~l~i~l~~~l~~il~~l~~flrK~~--r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise----------- 704 (1233)
T KOG1824|consen 639 S-PLDIDLSPVLTEILPELASFLRKNQ--RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE----------- 704 (1233)
T ss_pred c-cceeehhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH-----------
Confidence 5 3444323578888888877776532 111135667777888888776665433 344444444332
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhccchH----HhHHhhcC
Q 005686 629 GAQYDKEFVVCCLDLLSGLAEGLGSGIE----SLVISLFP 664 (683)
Q Consensus 629 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~l~~i~p 664 (683)
.+..+-+.|+.+++.++........ ++++.++-
T Consensus 705 ---sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ 741 (1233)
T KOG1824|consen 705 ---SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIR 741 (1233)
T ss_pred ---HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHH
Confidence 2344556677777777766554322 44555443
No 17
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2e-18 Score=176.55 Aligned_cols=603 Identities=15% Similarity=0.151 Sum_probs=375.9
Q ss_pred HhHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhH
Q 005686 12 QGFNEICRLLEQQISP-SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (683)
Q Consensus 12 ~~~~~l~~~l~~~~s~-~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~ 90 (683)
..+.++.+++..++++ +.+ ...++.++|++++..|+.|.....+++. +...++|.++|+.|...|.++|..++++.
T Consensus 4 ~~Ia~v~~~v~~lY~~~~~~-~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~--~k~~evqyFGAltL~~ki~~~~e~~~~~~ 80 (982)
T KOG2022|consen 4 DLIATVEELVTTLYSHRNHE-NDAITQKWLQDAQCSQQGWHFSWQLLQP--DKSSEVQYFGALTLHDKINTRWEECPANE 80 (982)
T ss_pred hHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHhhHHHHHHHHHHcCC--CchhHHHHHhHHHHHHHHHhhhccCChhH
Confidence 3577889999999987 666 8999999999999999999999999985 66778899999999999999999999999
Q ss_pred HHHHHHHHhhhhh--c-CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChh---HHhHHHHHHHHHHhhchh
Q 005686 91 QQYIKSELLPCLG--A-ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDIN---HMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 91 ~~~i~~~Ll~~l~--~-~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~---~r~~al~~l~~l~~~~~~ 164 (683)
...++..++..+. . ....|-+..+-.++.++-..-++.||.-+..+..++..+... .-..+...+..+ ...+.
T Consensus 81 ~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~L-s~~p~ 159 (982)
T KOG2022|consen 81 AVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVL-SFMPA 159 (982)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHh-ccCcH
Confidence 9999999888663 2 345566666666776666666779999988888888653211 111122222222 22222
Q ss_pred cccc-CCC----CCC----cchhHhhHHHHHHhhcCCC----H----HHHHHHHHHHHHHHhccchh---hHHhHHHHHH
Q 005686 165 VLDS-DVP----GLA----ECPINIFLPRLLQFFQSPH----T----SLRKLSLGSVNQFIMLMPSA---LFVSMDQYLQ 224 (683)
Q Consensus 165 ~~~~-~~~----~~~----~~~~~~i~~~l~~~l~~~~----~----~vr~~a~~~l~~~~~~~~~~---~~~~~~~~l~ 224 (683)
++.. +.+ +.+ ......+.+.+-..++.++ . -.+.++++|+..++.++.-. ....+..++.
T Consensus 160 e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~ 239 (982)
T KOG2022|consen 160 EFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLD 239 (982)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 2110 000 000 0112223333333333322 2 46788999998888753210 0000000010
Q ss_pred HHH------------------hh---------------------------------------------hCCCC--HHHHH
Q 005686 225 GLF------------------LL---------------------------------------------SNDPS--AEVRK 239 (683)
Q Consensus 225 ~l~------------------~~---------------------------------------------~~~~~--~~~~~ 239 (683)
.+. +. ..+++ ++.-.
T Consensus 240 ~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~ 319 (982)
T KOG2022|consen 240 VLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIV 319 (982)
T ss_pred HHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 000 00 00111 11111
Q ss_pred HHHHHHHHHHhhCccch---------hhhHHHHHHHHHHhhcC-----CChHHHHHHhhHHHHhhcc---------CCch
Q 005686 240 LVCAAFNLLIEVRPSFL---------EPHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLPH 296 (683)
Q Consensus 240 ~~~~~l~~l~~~~~~~~---------~~~l~~l~~~~~~~~~~-----~~~~vr~~a~~~l~~l~~~---------~~~~ 296 (683)
..+......+++....+ ..++..++..++.+..- -++.+-..++.||..+.+. +...
T Consensus 320 ~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~ 399 (982)
T KOG2022|consen 320 TFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKK 399 (982)
T ss_pred HHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcch
Confidence 11111111111111000 11222333333333221 1455667888999887654 1122
Q ss_pred hhH-HhhhhhhHHHHHhhcccChhh-hhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHH
Q 005686 297 ENL-KEFLPRLVPVLLSNMIYADDD-ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAA 374 (683)
Q Consensus 297 ~~~-~~~l~~l~~~l~~~l~~~~~d-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~ 374 (683)
..+ ++...+++..+++++..+.++ ...|..++ .+..-..|+...++
T Consensus 400 ~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s--------------------------------~e~F~~YR~diSD~ 447 (982)
T KOG2022|consen 400 QILSQQIYAQLVEILLKKLALPSKEIWLSWSSDS--------------------------------REQFESYRKDISDL 447 (982)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcch--------------------------------HHHHHHHHHHHHHH
Confidence 223 377888889888887765432 22232221 00111467777888
Q ss_pred HHHHHhhcCccchhhhHHHHHHHHccCC--CCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhc-cCCCChhHHH
Q 005686 375 LDVLSNVFGDEILPTLMPVIQAKLSASG--DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL-LDDKFPLIRS 451 (683)
Q Consensus 375 l~~l~~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~ 451 (683)
+...-..+|+.++..+...+.+.+.+.+ ...|..-++++.++..+++..+....+.++.++...... +.-.++..-.
T Consensus 448 ~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~ 527 (982)
T KOG2022|consen 448 LMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLS 527 (982)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHH
Confidence 8888888898888888899988887633 445999999999999999988766566666666543332 2234888888
Q ss_pred HHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005686 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (683)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~ 531 (683)
++...+|.++.++.. +..|+.+.+|.|+..++. ++....+...+.++|+.|+..+.||.++++..+-..+.+
T Consensus 528 Tss~~igs~s~~l~e------~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~ 599 (982)
T KOG2022|consen 528 TSSDLIGSLSNWLGE------HPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNK 599 (982)
T ss_pred HHHHHHHHHHHHHhc------CCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcc
Confidence 999999999999984 578899999999999974 455667778899999999999999999999888887776
Q ss_pred hh--HhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCC---cc--h--hhHHhHHHHHHHHhcc----
Q 005686 532 YQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD---KD--L--FPLLECFTSIAQALGA---- 598 (683)
Q Consensus 532 ~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~--~--~~~~~~l~~l~~~~g~---- 598 (683)
.. ..++..++.+||.+.....++. .++|+..++++++..++..-..+ .+ + .-.+.+++.+...+-.
T Consensus 600 ~~~~~S~~~klm~sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~ 678 (982)
T KOG2022|consen 600 SNAKDSDRLKLMKSIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDI 678 (982)
T ss_pred cccCchHHHHHHHHHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 43 3456689999999998877554 46899999999988877642122 11 1 1235667777665421
Q ss_pred --------c---cc-----cchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccch-HHhHHh
Q 005686 599 --------G---FT-----QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI-ESLVIS 661 (683)
Q Consensus 599 --------~---f~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~l~~ 661 (683)
. |. ....++++.+-+++.-.. .+.++.+.++.....=....+++| .|+++.
T Consensus 679 ~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~------------~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~ 746 (982)
T KOG2022|consen 679 IDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWL------------GLSDVVEASCIIMVKGVRSLLTSFPEPMLPS 746 (982)
T ss_pred ccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHh------------cchhHHHHHHHHHHhccccccccchhhhHHH
Confidence 0 11 122233443333333221 133455555444444456666778 689999
Q ss_pred hcCCccccCC
Q 005686 662 LFPNLTWKSP 671 (683)
Q Consensus 662 i~p~l~~~~~ 671 (683)
+.|++.....
T Consensus 747 l~~Fi~r~~~ 756 (982)
T KOG2022|consen 747 LCPFIVRFLT 756 (982)
T ss_pred HHHHHHHhcc
Confidence 9998865433
No 18
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.89 E-value=1.1e-18 Score=174.19 Aligned_cols=596 Identities=15% Similarity=0.150 Sum_probs=391.8
Q ss_pred CCHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh-c---CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHh--
Q 005686 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYS-Q---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA-- 82 (683)
Q Consensus 9 ~~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~-~---~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~-- 82 (683)
|.+..-..+...|-...+..+. -|+.|..+|..=. + .|-|-. ++.++-+. +.+.+-|+.-.-.+-+.+-+.
T Consensus 357 ~~e~kEr~i~~llLkvKNG~pp-mRk~~LR~ltdkar~~ga~~lfnq-iLpllMs~-tLeDqerhllVkvidriLyklDd 433 (1172)
T KOG0213|consen 357 DEEGKERKIMRLLLKVKNGTPP-MRKSALRILTDKARNFGAGPLFNQ-ILPLLMSP-TLEDQERHLLVKVIDRILYKLDD 433 (1172)
T ss_pred cccccHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHhhccHHHHHH-HHHHHcCc-cccchhhhhHHHHHHHHHHhhcc
Confidence 3334445566677777788888 9999999997632 2 233333 34444432 667777877766665555221
Q ss_pred ----hc----------cCCHhHHH-----HHHHHHhh---------hh----hcCChHHHHHHHHHHHHHHhhcCcCChH
Q 005686 83 ----YK----------SMSPSNQQ-----YIKSELLP---------CL----GAADRHIRSTVGTIVSVVVQLGGIAGWL 130 (683)
Q Consensus 83 ----w~----------~l~~~~~~-----~i~~~Ll~---------~l----~~~~~~vr~~~~~~l~~i~~~~~~~~~~ 130 (683)
|- .++++... .|...|.. .+ .+.++-||+..+.+.+.++... ..|
T Consensus 434 lvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal---gip 510 (1172)
T KOG0213|consen 434 LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL---GIP 510 (1172)
T ss_pred cchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh---CcH
Confidence 11 02333221 12222222 11 1357889999999999999864 568
Q ss_pred HHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 131 ELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 131 ~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
.++|+|...+.|. ++..|..++.+...++...+....+| +..++..+-.++.|....||..+..++..+++
T Consensus 511 ~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlph--------l~~lv~ii~~gl~De~qkVR~itAlalsalae 582 (1172)
T KOG0213|consen 511 ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPH--------LKPLVKIIEHGLKDEQQKVRTITALALSALAE 582 (1172)
T ss_pred HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhh--------hHHHHHHHHHhhcccchhhhhHHHHHHHHHHH
Confidence 9999999999886 89999999999999999888765544 67788888899999999999999999999988
Q ss_pred ccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhh-HHHHHHHHHHhhcCCChHHHHHHhhHHHH
Q 005686 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH-LRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (683)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 288 (683)
...+.-...++.++..|++-............++++..++-.....-..| -..++-.+..-..++|++.+...+..+..
T Consensus 583 aa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~q 662 (1172)
T KOG0213|consen 583 AATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQ 662 (1172)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 76555455667777777775543223333444455555543332222222 34566666677888999999999999999
Q ss_pred hhccCC-chhhHHhhhhhhHHHHHhhcccCh--hh---hhhh-hhcccCCCCCccCCCCcccccccCCCC--------CC
Q 005686 289 YFEAQL-PHENLKEFLPRLVPVLLSNMIYAD--DD---ESLV-EAEEDESLPDRDQDLKPRFHSSRLHGS--------EN 353 (683)
Q Consensus 289 l~~~~~-~~~~~~~~l~~l~~~l~~~l~~~~--~d---~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~--------~~ 353 (683)
+|.... ....+. ..++|.++...-... -| ...+ +. .+..+...|. ++
T Consensus 663 cc~t~Gv~~~y~r---~dilp~ff~~fw~rrmA~drr~ykqlv~t---------------tv~ia~KvG~~~~v~R~v~~ 724 (1172)
T KOG0213|consen 663 CCATDGVEPAYIR---FDILPEFFFSFWGRRMALDRRNYKQLVDT---------------TVEIAAKVGSDPIVSRVVLD 724 (1172)
T ss_pred HhcccCCCHHHHh---hhhhHHHHhhhhhhhhhccccchhhHHHH---------------HHHHHHHhCchHHHHHHhhh
Confidence 887622 111111 122333221110000 00 0000 00 0000000000 01
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHhhcCc-----cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhh
Q 005686 354 PEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY 428 (683)
Q Consensus 354 ~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~ 428 (683)
.- | + .-..|+....+.+.+...+|- .....++..+.-.++.+. ... ..-+.+|+.++..+.....
T Consensus 725 lk-d-e----~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt---t~d-~vml~gfg~V~~~lg~r~k 794 (1172)
T KOG0213|consen 725 LK-D-E----PEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT---TED-SVMLLGFGTVVNALGGRVK 794 (1172)
T ss_pred hc-c-c----cHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc---cch-hhhhhhHHHHHHHHhhccc
Confidence 10 1 1 114688888888888887764 223345555556665543 222 2556788888888887889
Q ss_pred hhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 429 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
+|+++++..++..|++..+.||..|+..+++++..+..- .-...+..+=..|++.|....|+|--..+.||..++.
T Consensus 795 pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc----~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~n 870 (1172)
T KOG0213|consen 795 PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTC----GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVN 870 (1172)
T ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhc----cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887641 1223344455567788888889999999999999988
Q ss_pred Hhc-ccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHH
Q 005686 509 EAA-EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLL 586 (683)
Q Consensus 509 ~~~-~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~ 586 (683)
..+ ..+.|-+..+++.|..++++...+++...++.++.++... +++. -....|-++++.+..+....+++ ..+.
T Consensus 871 vigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrg-pE~v---~aREWMRIcfeLlelLkahkK~iRRaa~ 946 (1172)
T KOG0213|consen 871 VIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRG-PEYV---SAREWMRICFELLELLKAHKKEIRRAAV 946 (1172)
T ss_pred hccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcC-cccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 4677888899999999999988889999999999999874 4443 23345555555544433234555 4688
Q ss_pred hHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCc
Q 005686 587 ECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNL 666 (683)
Q Consensus 587 ~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l 666 (683)
+++|.|++++|+ ..++-.+++-|+.+ ++..|.++.-+++.+++.+|. | .++|.|
T Consensus 947 nTfG~IakaIGP------qdVLatLlnnLkvq--------------eRq~RvcTtvaIaIVaE~c~p-F-----tVLPal 1000 (1172)
T KOG0213|consen 947 NTFGYIAKAIGP------QDVLATLLNNLKVQ--------------ERQNRVCTTVAIAIVAETCGP-F-----TVLPAL 1000 (1172)
T ss_pred hhhhHHHHhcCH------HHHHHHHHhcchHH--------------HHHhchhhhhhhhhhhhhcCc-h-----hhhHHH
Confidence 999999999999 35677777666653 334555665567777766665 3 578888
Q ss_pred cccCCCCcceeccc
Q 005686 667 TWKSPKRKCILTNK 680 (683)
Q Consensus 667 ~~~~~~~~~~~~~~ 680 (683)
......|+..|+|.
T Consensus 1001 mneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 1001 MNEYRTPEANVQNG 1014 (1172)
T ss_pred HhhccCchhHHHHh
Confidence 88888888888874
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.89 E-value=3e-19 Score=183.55 Aligned_cols=563 Identities=15% Similarity=0.168 Sum_probs=325.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc-----CCHhHHH
Q 005686 18 CRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQQ 92 (683)
Q Consensus 18 ~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~-----l~~~~~~ 92 (683)
+..+...+|+++. .+|.||+.|+++.++++|...|..+..+ ...+-.+|..|++.+||.|.++|.. +.++.+.
T Consensus 7 v~~~~~aqs~~p~-s~k~AE~~Lrqwe~q~gF~~kL~~I~~~-~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v 84 (947)
T COG5657 7 VKQLDLAQSPDPP-SVKCAEERLRQWEKQHGFALKLLSINLS-AFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENV 84 (947)
T ss_pred HHHHHhhcCCCCc-hHhhHHHHHHhhhccccHHHHHHHHHhc-cccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccch
Confidence 3455677888999 9999999999999999999999998874 3678999999999999999999975 5666677
Q ss_pred HHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCC
Q 005686 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (683)
Q Consensus 93 ~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (683)
.||..++.++-+.+....-+.|.+++.||+.+.|.+||.++|.+...+++.|...-.+.+.++..+.+.+...++.+ .
T Consensus 85 ~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd--~ 162 (947)
T COG5657 85 LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSD--A 162 (947)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccH--H
Confidence 99999999887766666669999999999999999999999999999999888888899999999999888655432 2
Q ss_pred CCcchhHhhHHHHHHhhcC--CCHHHH-----------HHHHHHHHHHH----hccchhhHHhHHHHHHHHHhhhCCCCH
Q 005686 173 LAECPINIFLPRLLQFFQS--PHTSLR-----------KLSLGSVNQFI----MLMPSALFVSMDQYLQGLFLLSNDPSA 235 (683)
Q Consensus 173 ~~~~~~~~i~~~l~~~l~~--~~~~vr-----------~~a~~~l~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (683)
+|......+.+.+.+.+.. +....+ ..+++.+..+. +..|+.+.+.++.+|..+.+.+...++
T Consensus 163 lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~~ 242 (947)
T COG5657 163 LFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSNP 242 (947)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcch
Confidence 2222233333333333221 111111 11333333332 334566667777777777776553222
Q ss_pred HH-------------HHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCC-----ChHHHHHHhhHHHHhhccCC--c
Q 005686 236 EV-------------RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT-----DDDVALEACEFWHSYFEAQL--P 295 (683)
Q Consensus 236 ~~-------------~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~vr~~a~~~l~~l~~~~~--~ 295 (683)
.. ...++..+..+...+++.+.+++-..++.++..+.+- -+.+...++.++....+.+. .
T Consensus 243 ~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk~ 322 (947)
T COG5657 243 VLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRKT 322 (947)
T ss_pred hhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHHH
Confidence 22 2335666666677788888888777777777665431 23345566666666665321 1
Q ss_pred hhhH----HhhhhhhHHHHH-hhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHH
Q 005686 296 HENL----KEFLPRLVPVLL-SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (683)
Q Consensus 296 ~~~~----~~~l~~l~~~l~-~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~ 370 (683)
.+.+ ...+.+++..++ +.+...++|.|.|.+++.+ |+|. .+ . .+-..++|..
T Consensus 323 ~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~e-------yire---~s--------~-----~dye~~vr~~ 379 (947)
T COG5657 323 AEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLE-------YIRE---QS--------K-----TDYEVNVRPC 379 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHH-------HHHh---hc--------c-----ccchhhhhHH
Confidence 1112 234455555553 5566667777878666543 4331 00 0 1122467888
Q ss_pred HHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC----CC
Q 005686 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD----KF 446 (683)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d----~~ 446 (683)
+...++.+-..+|.-+.+.+...+.+..+.|+...-..+.-++.++..++...-..+-+...-.-....+.+.+ .+
T Consensus 380 ~~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~ 459 (947)
T COG5657 380 IENELKDLFDVFGRIAVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIH 459 (947)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCce
Confidence 88888888888885445666666666666553111223333444433332221111222222222222233222 23
Q ss_pred hhHHHH-HHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHHHHHhccC--CccHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 005686 447 PLIRSI-SCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIIL 522 (683)
Q Consensus 447 ~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~--~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~ 522 (683)
.+++.. +...+.......... .....++ .+.+..+.....|. --.+|.+....+...+-. +....+-+++++
T Consensus 460 ~ri~~~~i~~i~~~r~~l~~~~---~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~-~~~~~~~lenl~ 535 (947)
T COG5657 460 LRILRSRIAYILTFRNQLDSSE---LSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFS-VCSKIGLLENLI 535 (947)
T ss_pred eEEehhccchheechhhhhhhh---hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc-cccccccHHHHH
Confidence 444332 222222222211110 0001111 11111121111111 122344433333332211 113334455555
Q ss_pred HHHHHHHHHhhH-hHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCC--cc-hhhHHhHHHHHHHHhcc
Q 005686 523 QHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD--KD-LFPLLECFTSIAQALGA 598 (683)
Q Consensus 523 ~~L~~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~-~~~~~~~l~~l~~~~g~ 598 (683)
-.+.+.+...++ ......+++|+.++...++... |....+++.+.+.|.....+. +. ....++.++.++.
T Consensus 536 ~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~--pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~---- 609 (947)
T COG5657 536 LLVLSLMASPSSLEEREFLLQLISRIIIIDPELIA--PLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVF---- 609 (947)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhh--hhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH----
Confidence 555555555443 4456889999999988777765 678888888877766543221 22 1234444444333
Q ss_pred ccccchHHHHHHHHHHHHH
Q 005686 599 GFTQFAQPVFQRCINIIQT 617 (683)
Q Consensus 599 ~f~~~~~~~~~~l~~~l~~ 617 (683)
.++...+..+|.+.+.+..
T Consensus 610 ~~~~~~~~~ip~l~~~l~p 628 (947)
T COG5657 610 LKSGMCEITIPTLVLALVP 628 (947)
T ss_pred hhhcccccchHHHHHhhCc
Confidence 3444555566666555543
No 20
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.88 E-value=1.7e-18 Score=170.09 Aligned_cols=523 Identities=15% Similarity=0.239 Sum_probs=328.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHH
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i 94 (683)
.-+-++++..+.++.. .++||++.|.+|+..|++|...-.+|.. +..|+.+..|..+|-..|..+|+-++.+.|..|
T Consensus 14 allDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~--S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 14 ALLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNN--SKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred HHHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhc--ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 3455677788889999 9999999999999999999999999975 889999999999999999999999999999999
Q ss_pred HHHHhhhhh--cCChHHH-------HHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc
Q 005686 95 KSELLPCLG--AADRHIR-------STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (683)
Q Consensus 95 ~~~Ll~~l~--~~~~~vr-------~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~ 165 (683)
|..+.+.+- +.+..+| +.+-..+..|++.+||..||+++|.+....+ .+.++.+..+.+|..+.+.....
T Consensus 91 Rnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFdf 169 (1053)
T COG5101 91 RNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFDF 169 (1053)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHhc
Confidence 999999763 3344554 4466778889999999999999999998765 56677788888888877765443
Q ss_pred cccC--------CCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHH
Q 005686 166 LDSD--------VPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAE 236 (683)
Q Consensus 166 ~~~~--------~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 236 (683)
-.+. .+..+....++++..+.+.|.. .++.+-.+.+..+..++.++|-.+. +..++++.+.+-+.+ .++
T Consensus 170 SaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~s-~pd 247 (1053)
T COG5101 170 SAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFNS-MPD 247 (1053)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhcc-CCc
Confidence 2111 0010111234555555555543 5778889999999999999884322 122344444443332 344
Q ss_pred HHHHHHHHHHHHHhhCcc---------chhh---------------------------------hHHHHHHHH-------
Q 005686 237 VRKLVCAAFNLLIEVRPS---------FLEP---------------------------------HLRNLFEYM------- 267 (683)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~---------~~~~---------------------------------~l~~l~~~~------- 267 (683)
.|...++||.++++.... .+.- ++..+..++
T Consensus 248 ~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~ 327 (1053)
T COG5101 248 TRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVY 327 (1053)
T ss_pred hhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHH
Confidence 555556666555442210 0000 011111110
Q ss_pred --------------------HHhhcCCChHHHHHHhhHHHHhhcc--------CC-------------------------
Q 005686 268 --------------------LQVNKDTDDDVALEACEFWHSYFEA--------QL------------------------- 294 (683)
Q Consensus 268 --------------------~~~~~~~~~~vr~~a~~~l~~l~~~--------~~------------------------- 294 (683)
++.-+-.+.++-..|++.|..+.-. |.
T Consensus 328 ~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~ 407 (1053)
T COG5101 328 ISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDST 407 (1053)
T ss_pred HHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcc
Confidence 0111112233444555555553211 00
Q ss_pred ---chhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 005686 295 ---PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (683)
Q Consensus 295 ---~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a 371 (683)
..+.....+.++.-.++..|.-.++- +-.+. |..+.+|.+.. | .+.-...+..
T Consensus 408 ~pLrkhiY~~ilsqLrlvlienMvrPEEV---liVen-----degEivRefvk-------------e---tDtI~lYksm 463 (1053)
T COG5101 408 KPLRKHIYIGILSQLRLVLIENMVRPEEV---LIVEN-----DEGEIVREFVK-------------E---TDTIELYKSM 463 (1053)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCcceE---EEEEC-----CCcHHHHHHhc-------------c---ccHhHHHHHH
Confidence 00001112223333333333322210 00000 00011111110 0 1112345556
Q ss_pred HHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHhh-----ccCCC
Q 005686 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIP-----LLDDK 445 (683)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~-~~~~~l~~~l~~-----~l~d~ 445 (683)
.++|-.++...-.++-..++.-+-..+.+. .++|..--.-++++|+++....+... .++-.++..++. ..+|.
T Consensus 464 RevLvyLthL~v~Dte~~mi~Klarq~dg~-EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdn 542 (1053)
T COG5101 464 REVLVYLTHLIVDDTEKYMIGKLARQLDGK-EWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDN 542 (1053)
T ss_pred hhHHHHHhhhhhhhHHHHHHHHHHHHhcCC-ccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 666666665554433334444444444333 45588888999999999887765442 444444444443 34577
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcc--------cchHH
Q 005686 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE--------ELAPR 517 (683)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~--------~l~~~ 517 (683)
...|....+..+|++.+++. .+..++..++..|++.+++....|+..||..+.++++.|+- +-.|+
T Consensus 543 KAVvASnIMyvvGQYpRFLk------ahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpF 616 (1053)
T COG5101 543 KAVVASNIMYVVGQYPRFLK------AHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPF 616 (1053)
T ss_pred chhhecceeeeeccchHHHH------HHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcH
Confidence 78888889999999999987 46899999999999999998899999999999999999953 34688
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhc
Q 005686 518 LEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (683)
Q Consensus 518 l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 574 (683)
+..|+..|-+...+.+.......+++.+.+++..+........+-.+|......|.+
T Consensus 617 I~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~n 673 (1053)
T COG5101 617 IVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLN 673 (1053)
T ss_pred HHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHH
Confidence 888888887776666666667899999999988765432222333445444445554
No 21
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=8.6e-17 Score=160.43 Aligned_cols=478 Identities=15% Similarity=0.180 Sum_probs=338.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~ 141 (683)
..+...|..-.++ -..+..+-...++ ....+...++..+..+.+.+|+..+.++..+........-..+.+.+.++++
T Consensus 67 ~~~~~~~~~~~v~-~~~~a~~~~~~d~-~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~ 144 (569)
T KOG1242|consen 67 LHNDNLRNNVVVL-EGTLAFHLQIVDP-RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT 144 (569)
T ss_pred chhHHHhhhhHHH-HHHHHHhccccCc-chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc
Confidence 4466777654444 3444443222233 3344556788888889999999999999999877655556677888888888
Q ss_pred cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCH-HHHHHHHHHHHHHHhccchhhHHhHH
Q 005686 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMD 220 (683)
Q Consensus 142 s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~ 220 (683)
..+...|.++...+..++...+.....+ ..++..+.....+... ..|..+.-++......++..+.|++.
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~---------~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv 215 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKE---------FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV 215 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhh---------hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH
Confidence 8888889999999988888776543221 4566677788888544 55556788888888888888889999
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHH
Q 005686 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (683)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 300 (683)
.+++.++....|....+|..+..+...+....+..= ++.+++.++..+....+..+..+++.++.++.+ .+..+.
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK~llpsll~~l~~~kWrtK~aslellg~m~~~--ap~qLs 290 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---VKLLLPSLLGSLLEAKWRTKMASLELLGAMADC--APKQLS 290 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh--chHHHH
Confidence 999999999999999999999999888887655321 123333333333333666788999999988877 566777
Q ss_pred hhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 005686 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (683)
Q Consensus 301 ~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~ 380 (683)
-.++.++|.+...|.++.. .+|+++..++..++.
T Consensus 291 ~~lp~iiP~lsevl~DT~~----------------------------------------------evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKP----------------------------------------------EVRKAGIETLLKFGS 324 (569)
T ss_pred HHHhHhhHHHHHHHccCCH----------------------------------------------HHHHHHHHHHHHHHH
Confidence 7888899988776665432 379999999999999
Q ss_pred hcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 005686 381 VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (683)
Q Consensus 381 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (683)
.....-+..++|.+.+++.++. -+ -..++..++.-.- ...--.+.+.-++|.+.+.+.+.+...++.++..++.+
T Consensus 325 vidN~dI~~~ip~Lld~l~dp~---~~-~~e~~~~L~~ttF-V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 325 VIDNPDIQKIIPTLLDALADPS---CY-TPECLDSLGATTF-VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred hhccHHHHHHHHHHHHHhcCcc---cc-hHHHHHhhcceee-eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 9988667889999999999876 33 3444554443211 11112367788999999999998888999999999999
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHh-HHHH
Q 005686 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NLRI 539 (683)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~-~~~~ 539 (683)
+.-.. ++....+|++.++|.+-..+.|..|.+|..+..|++.+.+..++.-- +..++.+...+...... ....
T Consensus 400 ~~Lve---Dp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g 473 (569)
T KOG1242|consen 400 CKLVE---DPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRSG 473 (569)
T ss_pred HHhhc---CHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhHH
Confidence 98773 12367899999999999999999999999999999999998865422 33333334444333222 2224
Q ss_pred HHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHH
Q 005686 540 VYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQ 618 (683)
Q Consensus 540 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~ 618 (683)
..+.++.+....|. .++..+++.+........ .++.+ ...+..+..+-...|..|.+|+..+++.+.+.+.+.
T Consensus 474 ~aq~l~evl~~~~v-----~~~~~~~~~~~a~~~~~~-~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~ 547 (569)
T KOG1242|consen 474 AAQDLSEVLAGLGV-----EKVEDILPEILANASSVL-IDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADN 547 (569)
T ss_pred HhhhHHHHHhcccc-----hHHHHHHHHHHHHHhhcc-chhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhc
Confidence 55555555554443 467778877766544322 12222 133344555556678899999999999999888753
No 22
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=8.5e-16 Score=151.08 Aligned_cols=461 Identities=17% Similarity=0.239 Sum_probs=295.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhh---cCChHHH
Q 005686 34 SQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG---AADRHIR 110 (683)
Q Consensus 34 ~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~---~~~~~vr 110 (683)
.+|..+|++|++.++.|..+-+++.. ..+-+...+|++.+|+++...+..+++.....+|+.++..++ +..+.+|
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~--~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~ 79 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ--KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIR 79 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHH
Confidence 46899999999999999999999975 578899999999999999999999999899999998877664 4445899
Q ss_pred HHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC-----------CcchhH
Q 005686 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL-----------AECPIN 179 (683)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~-----------~~~~~~ 179 (683)
.+++-+++.++-..+ .|.+-++.+.....+..+. ..++..+.+-.+++..+..... ......
T Consensus 80 tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-----~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~ 152 (559)
T KOG2081|consen 80 TQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-----VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVS 152 (559)
T ss_pred HHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-----HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHH
Confidence 999999999987753 7888777777766665543 3344444444444432211100 012233
Q ss_pred hhHHHHHHhhcCC---CHHHHHHHHHHHHHHHh--ccchhhHHhHHHHHHHHHhhhCC----------------------
Q 005686 180 IFLPRLLQFFQSP---HTSLRKLSLGSVNQFIM--LMPSALFVSMDQYLQGLFLLSND---------------------- 232 (683)
Q Consensus 180 ~i~~~l~~~l~~~---~~~vr~~a~~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~---------------------- 232 (683)
.++..+..+++++ +..+-..+++|++++.. ..|.+..-....++..++..+++
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~ 232 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRS 232 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhh
Confidence 4444455555543 36778888999988876 33332211111223333333221
Q ss_pred --------------------------CCHHHHHHHHHHHHHHHhhCccchh---hhHHHHHHHHHHhhcCCChHHHHHHh
Q 005686 233 --------------------------PSAEVRKLVCAAFNLLIEVRPSFLE---PHLRNLFEYMLQVNKDTDDDVALEAC 283 (683)
Q Consensus 233 --------------------------~~~~~~~~~~~~l~~l~~~~~~~~~---~~l~~l~~~~~~~~~~~~~~vr~~a~ 283 (683)
.+.+-+...+..|..+.+.....+. .+.-.++..++....+.+.++...++
T Consensus 233 ~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF 312 (559)
T KOG2081|consen 233 EGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASF 312 (559)
T ss_pred ccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhH
Confidence 1222223333333333222111110 01122344444455667778889999
Q ss_pred hHHHHhhcc------CCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCC
Q 005686 284 EFWHSYFEA------QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (683)
Q Consensus 284 ~~l~~l~~~------~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d 357 (683)
.+|..+.+. ......++||..+++..+.+..+... |.+.. .|
T Consensus 313 ~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~-~~~~l-----------------------------~E-- 360 (559)
T KOG2081|consen 313 NFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP-DQFDL-----------------------------PE-- 360 (559)
T ss_pred HhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC-ccccC-----------------------------cc--
Confidence 999998765 12234568999999999998887754 21100 01
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHH
Q 005686 358 DDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVA 436 (683)
Q Consensus 358 d~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~ 436 (683)
+.+.....|....+.+..++-.+|+ +.+..+...+.+ ..+. |+.-+|+++.+..++......-.+.+++++.
T Consensus 361 --e~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~---We~~EAaLF~l~~~~~~~~~~e~~i~pevl~ 433 (559)
T KOG2081|consen 361 --EESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNAS---WEEVEAALFILRAVAKNVSPEENTIMPEVLK 433 (559)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCc---hHHHHHHHHHHHHHhccCCccccchHHHHHH
Confidence 1122345788889999999999987 545444444443 2334 9999999999999998765433455555565
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchH
Q 005686 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (683)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~ 516 (683)
.+.+.-. +.+ +|++++..+|.+++++.. .+..++.++..+...++... ...++..++..++..|...+.+
T Consensus 434 ~i~nlp~-Q~~-~~~ts~ll~g~~~ew~~~------~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~ 503 (559)
T KOG2081|consen 434 LICNLPE-QAP-LRYTSILLLGEYSEWVEQ------HPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTC 503 (559)
T ss_pred HHhCCcc-chh-HHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhh
Confidence 5554432 233 999999999999999974 57888888888888888654 8889999999999999777666
Q ss_pred HHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHhcc
Q 005686 517 RLEIILQHLMMAFGKYQ-RRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 517 ~l~~i~~~L~~~l~~~~-~~~~~~~~~~l~~l~~~~~~ 553 (683)
+++.+...+.......- .+.. ..+..++.++...+.
T Consensus 504 l~~~~~~l~~~l~~~~~~~e~a-~l~~~~s~i~~~lp~ 540 (559)
T KOG2081|consen 504 LIPSLLELIRSLDSTQINEEAA-CLLQGISLIISNLPA 540 (559)
T ss_pred hhHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHhcCCH
Confidence 55555443333222211 1222 256666666665543
No 23
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.4e-16 Score=157.32 Aligned_cols=479 Identities=15% Similarity=0.156 Sum_probs=320.8
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhH
Q 005686 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (683)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~ 182 (683)
++...+|.....+........+...-..++|...+.+++. +...|++.+...+.+....... +.....++
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~---------d~~~~~~~ 98 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV---------DPRPISII 98 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc---------CcchhHHH
Confidence 4567788776666666655444444556777777777653 5567777777777766654432 12346678
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccc-hhhhHH
Q 005686 183 PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF-LEPHLR 261 (683)
Q Consensus 183 ~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~ 261 (683)
..+++.+.-+++.+|.+...|+..+....... ....+.+.+.+.++.....-|..+...+..++...+.. +.+ .
T Consensus 99 ~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--~ 173 (569)
T KOG1242|consen 99 EILLEELDTPSKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE--F 173 (569)
T ss_pred HHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--h
Confidence 88899999999999999999998776432211 11233444555555455566667777777776655422 222 2
Q ss_pred HHHHHHHHhhcCCChHHHHH-HhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCC
Q 005686 262 NLFEYMLQVNKDTDDDVALE-ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (683)
Q Consensus 262 ~l~~~~~~~~~~~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~ 340 (683)
.++..+.....+.....+.. ++-.....+.. ......||+..++|.++.+..+...
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~--Lg~~~EPyiv~~lp~il~~~~d~~~--------------------- 230 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGN--LGPPFEPYIVPILPSILTNFGDKIN--------------------- 230 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHh--cCCCCCchHHhhHHHHHHHhhccch---------------------
Confidence 34555555566654433332 33223333333 2345678888888988776654221
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHH
Q 005686 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (683)
Q Consensus 341 ~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~ 420 (683)
.+|.++..+...+...+....+..++|.+...+.... |+.+.+++..+|.++
T Consensus 231 -------------------------~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~k---WrtK~aslellg~m~ 282 (569)
T KOG1242|consen 231 -------------------------KVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAK---WRTKMASLELLGAMA 282 (569)
T ss_pred -------------------------hhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHh---hhhHHHHHHHHHHHH
Confidence 4899999999999999987666666665555554446 999999999999999
Q ss_pred hcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhh-------------CCC----------------
Q 005686 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI-------------GHQ---------------- 471 (683)
Q Consensus 421 ~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------------~~~---------------- 471 (683)
...+..+.-.+++++|.+...|.|.++.||.++..++-+++....+.. .|.
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV 362 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence 988988899999999999999999999999999999999987654210 010
Q ss_pred --cchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 005686 472 --NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (683)
Q Consensus 472 --~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l 547 (683)
...+-+.-++|.+.+.+++.+...+..++..+.+++.-. ...+.||++.+++.+...+.....+++..+..+++.+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 123445666777777777777777788888888888776 5678999999999999999888667888999999999
Q ss_pred HHHhccccCchhHHHhhhHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcc
Q 005686 548 ADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVA 627 (683)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~ 627 (683)
.+.+|.. +++...|.+.+...... ...+.....+.++.+...+|. .+...+++.++.......
T Consensus 443 ~e~~g~~-----~f~d~~p~l~e~~~~~k-~~~~~~g~aq~l~evl~~~~v---~~~~~~~~~~~a~~~~~~-------- 505 (569)
T KOG1242|consen 443 LERLGEV-----SFDDLIPELSETLTSEK-SLVDRSGAAQDLSEVLAGLGV---EKVEDILPEILANASSVL-------- 505 (569)
T ss_pred HHHHHhh-----cccccccHHHHhhccch-hhhhhHHHhhhHHHHHhcccc---hHHHHHHHHHHHHHhhcc--------
Confidence 9999875 33667776666543221 111112333445444444443 344555665544333211
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCccc
Q 005686 628 AGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLTW 668 (683)
Q Consensus 628 ~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~ 668 (683)
.++.+++.-+.++..+-...|..|.+|+..++|.+..
T Consensus 506 ----~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k 542 (569)
T KOG1242|consen 506 ----IDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLK 542 (569)
T ss_pred ----chhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHH
Confidence 2333555555666666777888899999999976643
No 24
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.78 E-value=1.8e-16 Score=155.70 Aligned_cols=598 Identities=16% Similarity=0.139 Sum_probs=368.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHh-c-CCCh-HHHHHHHhhhccCCCHHHHHHHHHHHHHHHHH------hhc--
Q 005686 16 EICRLLEQQISPSSTADKSQIWQQLQQYS-Q-FPDF-NNYLAFILARAEGKSVEIRQAAGLLLKNNLRT------AYK-- 84 (683)
Q Consensus 16 ~l~~~l~~~~s~~~~~~r~~A~~~L~~~~-~-~p~~-~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~------~w~-- 84 (683)
.+..+|-...+.++. -|+.+...|..=. . .|.+ ...++.++-+- +.+.+-|+.-.-++-+.+-+ .|-
T Consensus 169 ~v~rllLkvKNG~~~-mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r-~LeDqerhl~vk~idr~Ly~lddl~~pyvhk 246 (975)
T COG5181 169 DVYRLLLKVKNGGKR-MRMEGLRILTDKAVNFGAAAVFNKVLPMLMSR-ELEDQERHLVVKLIDRLLYGLDDLKVPYVHK 246 (975)
T ss_pred hHHHHHhhcccCCch-hhHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhhhhhHhHHHHHHHHHHhcccccccceee
Confidence 455666666778888 8999988887633 2 2332 23344444422 56677777776666655522 111
Q ss_pred --------cCCHhHH------HHHHHHHhh-hh-----------hcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHH
Q 005686 85 --------SMSPSNQ------QYIKSELLP-CL-----------GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT 138 (683)
Q Consensus 85 --------~l~~~~~------~~i~~~Ll~-~l-----------~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~ 138 (683)
.++++.+ +.|.+.... .| .+.++-||+..+.+.+.+++.. ..++++|.+..
T Consensus 247 ILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al---gv~~llpfl~a 323 (975)
T COG5181 247 ILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL---GVEELLPFLEA 323 (975)
T ss_pred EEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh---CcHHHHHHHHH
Confidence 0233221 222222111 12 1357899999999999999875 55888999988
Q ss_pred HhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHH
Q 005686 139 CLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (683)
Q Consensus 139 ~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 217 (683)
.+.|. ++..|..++++...++...+....+ ++..++..+-.++.|.+..||.-+..++..+++...+.-..
T Consensus 324 ~c~SrkSw~aRhTgiri~qqI~~llG~s~l~--------hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie 395 (975)
T COG5181 324 LCGSRKSWEARHTGIRIAQQICELLGRSRLS--------HLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIE 395 (975)
T ss_pred HhcCccchhhhchhhHHHHHHHHHhCccHHh--------hhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchH
Confidence 88876 8899999999999999988876544 35778888889999999999999999999888876554455
Q ss_pred hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhh-CccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCch
Q 005686 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPH 296 (683)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 296 (683)
.++.++..|++-.+..........+++...++-. .|+....+-....+.+...+++++++.+...+.+...+......
T Consensus 396 ~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~- 474 (975)
T COG5181 396 QFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTD- 474 (975)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCC-
Confidence 5666677776654322222222223333322221 23333334456777777788888877766666555555443111
Q ss_pred hhHHhhhhhhHHHHHhh-ccc-Chhhhhhh----hhcccCCCCCc-cCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 005686 297 ENLKEFLPRLVPVLLSN-MIY-ADDDESLV----EAEEDESLPDR-DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (683)
Q Consensus 297 ~~~~~~l~~l~~~l~~~-l~~-~~~d~~~~----~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~ 369 (683)
.-..+..++.|.++.. ... ...|-... ...-..+...+ ++.++..+ +.+. |+.+ ..|+
T Consensus 475 -tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil--------~~~~-De~e-----p~r~ 539 (975)
T COG5181 475 -TPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKIL--------EYYS-DEPE-----PYRK 539 (975)
T ss_pred -CHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHH--------hhcc-CCcc-----hhhh
Confidence 0111222333333211 000 00000000 00000000000 00000000 0010 1111 2577
Q ss_pred HHHHHHHHHHhhcCc-----cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC
Q 005686 370 CSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (683)
Q Consensus 370 ~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 444 (683)
.++.+.+++...+|- .....++..+...++.++ ..-...+.|++.+.-...-...||+..+++.++..|++
T Consensus 540 m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~----~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~ 615 (975)
T COG5181 540 MNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD----TTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRS 615 (975)
T ss_pred hhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc----ccccEEEecccceeeehhhccCcchHHHHHHHHHHhcC
Confidence 777777777776653 222334444444554433 11122233444444333334479999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc-ccchHHHHHHHH
Q 005686 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQ 523 (683)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~l~~~l~~i~~ 523 (683)
+.|.||..|+...|.++..++.- .....+..+=..|++.+....|+|--..+.|+..+....+ ..++|-+..|++
T Consensus 616 k~p~vR~~aadl~~sl~~vlk~c----~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP 691 (975)
T COG5181 616 KPPDVRIRAADLMGSLAKVLKAC----GETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILP 691 (975)
T ss_pred CCccHHHHHHHHHHHHHHHHHhc----chHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccc
Confidence 99999999999999999877631 1234455666677888888889999999999988877664 568888999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhcccccc
Q 005686 524 HLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQ 602 (683)
Q Consensus 524 ~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~ 602 (683)
.|..++.+...++....+..++.++...+... -..+.|-.+++.+..+...++++ ..+-+++|.|++++|+
T Consensus 692 ~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi----~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP---- 763 (975)
T COG5181 692 SLTPILRNKHQKVVANTIALVGTICMNSPEYI----GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP---- 763 (975)
T ss_pred cccHhhhhhhHHHhhhHHHHHHHHHhcCcccC----CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH----
Confidence 99999998877888888889999888754432 22344545555444333235565 4577889999999998
Q ss_pred chHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCccccCCCCcceeccc
Q 005686 603 FAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLTWKSPKRKCILTNK 680 (683)
Q Consensus 603 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~~~~~~~~~~~~~ 680 (683)
..++..+++-|+.+ ++..|.++.-+++.+++.+|. | .++|.|.+...+|+..|+|.
T Consensus 764 --qdvL~~LlnnLkvq--------------eRq~RvctsvaI~iVae~cgp-f-----sVlP~lm~dY~TPe~nVQnG 819 (975)
T COG5181 764 --QDVLDILLNNLKVQ--------------ERQQRVCTSVAISIVAEYCGP-F-----SVLPTLMSDYETPEANVQNG 819 (975)
T ss_pred --HHHHHHHHhcchHH--------------HHHhhhhhhhhhhhhHhhcCc-h-----hhHHHHHhcccCchhHHHHh
Confidence 45677666666643 344566666667877777775 3 47888888889999888874
No 25
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.76 E-value=2.6e-14 Score=143.48 Aligned_cols=527 Identities=15% Similarity=0.199 Sum_probs=335.8
Q ss_pred cCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc
Q 005686 45 QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (683)
Q Consensus 45 ~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~ 124 (683)
.-|+..++|-.+..+ ..+-+.|+.+.-+..+.-.-.-..+-+ ....+.+.+-.++.+....||...|.+++.+++..
T Consensus 508 gip~llpfLkavc~S--kkSwqaRhTgIkivqqIail~Gcsvlp-hl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 508 GIPALLPFLKAVCGS--KKSWQARHTGIKIVQQIAILSGCSVLP-HLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred CcHHHHHHHHHHhcc--ccchhhhchhhHHHHHHHHHhcchhhh-hhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 356666666555543 446677776665554332211111111 22234444445677889999999999999999986
Q ss_pred Cc---CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHH
Q 005686 125 GI---AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSL 201 (683)
Q Consensus 125 ~~---~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~ 201 (683)
.| ..+..++..|.+.+++..-....+-+.+++.++-....+...+ +...++-.+..-+++|+.++++..+
T Consensus 585 ~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~y-------yTrevmlil~rEf~sPDeemkkivL 657 (1172)
T KOG0213|consen 585 TPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASY-------YTREVMLILIREFGSPDEEMKKIVL 657 (1172)
T ss_pred CCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHH-------hHHHHHHHHHHhhCCChHHHHHHHH
Confidence 54 5667788888888877666666667778887776665544322 2356677788889999999999999
Q ss_pred HHHHHHHhccc--h-hhH-HhHHHH-----------------------------------HHHHHhhhCCCCHHHHHHHH
Q 005686 202 GSVNQFIMLMP--S-ALF-VSMDQY-----------------------------------LQGLFLLSNDPSAEVRKLVC 242 (683)
Q Consensus 202 ~~l~~~~~~~~--~-~~~-~~~~~~-----------------------------------l~~l~~~~~~~~~~~~~~~~ 242 (683)
+.+..++...+ + .+. +.++.| +..+..-+.|..+..|+-+.
T Consensus 658 KVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~ 737 (1172)
T KOG0213|consen 658 KVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVA 737 (1172)
T ss_pred HHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHH
Confidence 99998875432 1 110 111111 12222223445566677677
Q ss_pred HHHHHHHhhCcc-chhh-hHHHHHHHHHHhhcCC--ChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccCh
Q 005686 243 AAFNLLIEVRPS-FLEP-HLRNLFEYMLQVNKDT--DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD 318 (683)
Q Consensus 243 ~~l~~l~~~~~~-~~~~-~l~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 318 (683)
+....++...+. -+.. .-..++..++..++.. ++.|- +..++.++.. ....++||+++++..++..+....
T Consensus 738 etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vm---l~gfg~V~~~--lg~r~kpylpqi~stiL~rLnnks 812 (1172)
T KOG0213|consen 738 ETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVM---LLGFGTVVNA--LGGRVKPYLPQICSTILWRLNNKS 812 (1172)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhh---hhhHHHHHHH--HhhccccchHHHHHHHHHHhcCCC
Confidence 666666655432 1211 1223444444444432 22222 2334455444 334568999999998887775422
Q ss_pred hhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc---Cc-cchhhhHHHH
Q 005686 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---GD-EILPTLMPVI 394 (683)
Q Consensus 319 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~---~~-~~~~~l~~~l 394 (683)
..+|.-|+.+++.++..+ ++ ..+..+--.+
T Consensus 813 ----------------------------------------------a~vRqqaadlis~la~Vlktc~ee~~m~~lGvvL 846 (1172)
T KOG0213|consen 813 ----------------------------------------------AKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVL 846 (1172)
T ss_pred ----------------------------------------------hhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHH
Confidence 147888999999888776 44 5677788888
Q ss_pred HHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcc
Q 005686 395 QAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (683)
Q Consensus 395 ~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (683)
.+++.... +++--..+.++.++....+ ..+.+-+.+++|.+.+.|++.|..|...++..+|.++..-+.. ..
T Consensus 847 yEylgeey---pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~----v~ 919 (1172)
T KOG0213|consen 847 YEYLGEEY---PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY----VS 919 (1172)
T ss_pred HHhcCccc---HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc----CC
Confidence 89998777 7777777777776666542 3467888999999999999999999999999999999765543 22
Q ss_pred hhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcc
Q 005686 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (683)
..-.-.+.-.|+.+|...+..+|.+|..+++.+.+..|.. .++..|++-++..+...+...--+|+.+++.+|+
T Consensus 920 aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p 993 (1172)
T KOG0213|consen 920 AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP 993 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc
Confidence 2333455556778888888999999999999998887632 3444444444443322333444566667777663
Q ss_pred ccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCC
Q 005686 554 ELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQY 632 (683)
Q Consensus 554 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 632 (683)
| .++|.|..-+..- ...+ ..+++.++.+...+|..-..|+-.+.|.+-..|.+.
T Consensus 994 ------F--tVLPalmneYrtP---e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr-------------- 1048 (1172)
T KOG0213|consen 994 ------F--TVLPALMNEYRTP---EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR-------------- 1048 (1172)
T ss_pred ------h--hhhHHHHhhccCc---hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc--------------
Confidence 2 3566665544421 1122 257888999999999877788888888665555432
Q ss_pred CchHHHHHHHHHHHHHHHhcc-----chHHhHHhhcCCccccC
Q 005686 633 DKEFVVCCLDLLSGLAEGLGS-----GIESLVISLFPNLTWKS 670 (683)
Q Consensus 633 ~~~~~~~a~~~l~~l~~~~~~-----~~~~~l~~i~p~l~~~~ 670 (683)
|.--|..+.+++..++-++.. .+-..++-+-|.+...+
T Consensus 1049 D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~s 1091 (1172)
T KOG0213|consen 1049 DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETS 1091 (1172)
T ss_pred cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCC
Confidence 333577888888887754321 24455565656654443
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.6e-14 Score=156.23 Aligned_cols=567 Identities=16% Similarity=0.182 Sum_probs=334.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHH----hcCCChHH-------HHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCC
Q 005686 19 RLLEQQISPSSTADKSQIWQQLQQY----SQFPDFNN-------YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (683)
Q Consensus 19 ~~l~~~~s~~~~~~r~~A~~~L~~~----~~~p~~~~-------~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~ 87 (683)
.+.....||++. .|+++.-||-.+ .+.|+... ...++|+ ++++-+.-.|+.-+ .-.|.-=+
T Consensus 822 ~l~~~~~s~nph-~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Ls---d~dEf~QDvAsrGl----glVYelgd 893 (1702)
T KOG0915|consen 822 LLDTLLTSPNPH-ERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLS---DNDEFSQDVASRGL----GLVYELGD 893 (1702)
T ss_pred HHHHhcCCCCHH-HHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhc---ccHHHHHHHHhcCc----eEEEecCC
Confidence 344556688999 999999998763 34555433 3344444 44555555555333 23344446
Q ss_pred HhHHHHHHHHHhhhhhcCChHHHHHHH-------------------HHHHHHHhhcCcCChHHHHHHHHHHhcc-CChhH
Q 005686 88 PSNQQYIKSELLPCLGAADRHIRSTVG-------------------TIVSVVVQLGGIAGWLELLQALVTCLDS-NDINH 147 (683)
Q Consensus 88 ~~~~~~i~~~Ll~~l~~~~~~vr~~~~-------------------~~l~~i~~~~~~~~~~~l~~~l~~~l~s-~~~~~ 147 (683)
...++.+.+.|+..|.+.....-+..+ ..-..++.....-.=|+++-.++++.++ ..|+.
T Consensus 894 ~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnS 973 (1702)
T KOG0915|consen 894 SSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNS 973 (1702)
T ss_pred chhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhc
Confidence 678888888888887542211000000 0000111111122347777788888775 57899
Q ss_pred HhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHH
Q 005686 148 MEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF 227 (683)
Q Consensus 148 r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~ 227 (683)
|.+|...++.+.+..++.+. ++++.++|.+..+==||+..|+.+...+...++..-...+..++.+|++.|+
T Consensus 974 k~GaAfGf~~i~~~a~~kl~--------p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL 1045 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLE--------PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELL 1045 (1702)
T ss_pred ccchhhchHHHHHHHHHhhh--------hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 99999999999998887765 4689999999999999999999999999988887655556778888899888
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHHhhcCCChHHHHHHhh---HHHHhhcc---CCchhhHH
Q 005686 228 LLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACE---FWHSYFEA---QLPHENLK 300 (683)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~---~l~~l~~~---~~~~~~~~ 300 (683)
..+.+..+.+|+.+|-+|..+++..+ +.+..+++.+...++..+.|-.+.||..|-. +++.++-. .......+
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 88888999999999999999998766 5667788899888888888888889887654 45544322 11223345
Q ss_pred hhhhhhHHHHHh-hcccChhhhhhhhhcc-cCCCCCccCCCCcccccccCCCCCCCCCCCcccccccc------------
Q 005686 301 EFLPRLVPVLLS-NMIYADDDESLVEAEE-DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN------------ 366 (683)
Q Consensus 301 ~~l~~l~~~l~~-~l~~~~~d~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~------------ 366 (683)
..++.++|.++. .+...-.+...+.-.. -+........++|++.+..-.--+-+. +-+....+
T Consensus 1126 ~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s---~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS---ELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc---ccchHHHHHHHHhhhhhHHH
Confidence 667777777752 2221111111110000 000000011233333221000000000 00001000
Q ss_pred ----HHHHH------HHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHH
Q 005686 367 ----LRKCS------AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVA 436 (683)
Q Consensus 367 ----~r~~a------~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~ 436 (683)
.|..+ .++++.+...+...++..++|.+.+.+++. ..-..|.++...+..++..++.++.||...++.
T Consensus 1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s--Vgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~ 1280 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS--VGLGTKVGCASFISLLVQRLGSEMTPYSGKLLR 1280 (1702)
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--CCCCcchhHHHHHHHHHHHhccccCcchhHHHH
Confidence 00000 012222222222234455566666666542 226778888888888888888889999999999
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchH
Q 005686 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (683)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~ 516 (683)
.++..++|.++.+|.+...+.|.+.++-.+. ....++..++..++. + .+..+..+|..+..+.....+.+..
T Consensus 1281 al~~g~~dRNesv~kafAsAmG~L~k~Ss~d----q~qKLie~~l~~~l~---k-~es~~siscatis~Ian~s~e~Lkn 1352 (1702)
T KOG0915|consen 1281 ALFPGAKDRNESVRKAFASAMGYLAKFSSPD----QMQKLIETLLADLLG---K-DESLKSISCATISNIANYSQEMLKN 1352 (1702)
T ss_pred HHhhccccccHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHhc---c-CCCccchhHHHHHHHHHhhHHHHHh
Confidence 9999999999999999999999999876532 233444444443332 2 2223366677776677777888889
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHH-HHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCC-CcchhhHHhHHHHHHH
Q 005686 517 RLEIILQHLMMAFGKYQRRNLRIVY-DAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNS-DKDLFPLLECFTSIAQ 594 (683)
Q Consensus 517 ~l~~i~~~L~~~l~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~l~~ 594 (683)
|...|++...-...... +...... +....++. .|.... +-|+.+++..+.....+ ++ ..-..++...+..++.
T Consensus 1353 ~asaILPLiFLa~~ee~-Ka~q~Lw~dvW~e~vs-ggagtv-rl~~~eiLn~iceni~n--n~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1353 YASAILPLIFLAMHEEE-KANQELWNDVWAELVS-GGAGTV-RLYLLEILNLICENITN--NESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred hHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHhCC-CCcchh-hhhHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHcc
Confidence 99999986544444331 2111111 11111111 121111 12666666555443221 11 1212345556666665
Q ss_pred Hhccccc-cchHHHHHHHHHHHHHHH
Q 005686 595 ALGAGFT-QFAQPVFQRCINIIQTQQ 619 (683)
Q Consensus 595 ~~g~~f~-~~~~~~~~~l~~~l~~~~ 619 (683)
....... |++-.+.+.+...+....
T Consensus 1428 ~~sss~~~p~ilkl~~~ll~~L~GRi 1453 (1702)
T KOG0915|consen 1428 GLSSSAPIPVILKLALSLLDTLNGRI 1453 (1702)
T ss_pred cccccCChHHHHHHHHHHHHHhhccc
Confidence 5544333 666666666666665543
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2e-14 Score=140.41 Aligned_cols=410 Identities=14% Similarity=0.120 Sum_probs=307.9
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhc-CcCC---hHHHHHHH-HHHhccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 005686 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAG---WLELLQAL-VTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (683)
Q Consensus 97 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-~~~~---~~~l~~~l-~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (683)
.+.+.+++.-..-|++++.-+..+++.. ..+. ...++..+ .....+.+.+.|.+++..+....-..+..-.
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~---- 79 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA---- 79 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH----
Confidence 3445666666777889998888888754 2222 24455533 3455677878888999999888776665432
Q ss_pred CCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhh
Q 005686 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (683)
Q Consensus 172 ~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (683)
.++..++|.++.++.|++..+|..|+..++.++......+..+++.+...++++..|.+..++. +.+.+..++..
T Consensus 80 ----~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikd 154 (675)
T KOG0212|consen 80 ----GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKD 154 (675)
T ss_pred ----HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHH
Confidence 3678999999999999999999999999999998877777888899999999998888877754 44555555432
Q ss_pred Cc--cchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhccc
Q 005686 252 RP--SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (683)
Q Consensus 252 ~~--~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~ 329 (683)
-. ..-.-+++.+++.+-+.+...++..|...++.+..+-.. ..-.+-.|++.+++.++..++++.+
T Consensus 155 IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~~yl~~~ldGLf~~LsD~s~---------- 222 (675)
T KOG0212|consen 155 IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMISYLPSLLDGLFNMLSDSSD---------- 222 (675)
T ss_pred hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHHhcchHHHHHHHHHhcCCcH----------
Confidence 11 111346788999988888888888999888866666444 2334557889999999888876443
Q ss_pred CCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---c-chhhhHHHHHHHHccCCCCC
Q 005686 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---E-ILPTLMPVIQAKLSASGDEA 405 (683)
Q Consensus 330 e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~-~~~~l~~~l~~~l~~~~~~~ 405 (683)
.+|..+..+++.+...+.. . -.+..++.+...+.+++
T Consensus 223 ------------------------------------eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~--- 263 (675)
T KOG0212|consen 223 ------------------------------------EVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE--- 263 (675)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc---
Confidence 2666666677666655532 2 24577888888888888
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCCh-hHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l 484 (683)
+..+.-|+.++..+....+..+-+++..++..+++++.|..+ .++..+...-+.+.+.+...... ..--+..++..+
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~--~~id~~~ii~vl 341 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK--EEIDYGSIIEVL 341 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc--cccchHHHHHHH
Confidence 899999999999999988888889999999999999998777 47777776666666655433110 112345889999
Q ss_pred HHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhh
Q 005686 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (683)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 564 (683)
.+.+.++....|.++..++..+-...+..+.-+.+.|.+.|.+.+.+.++.+...+++.++.++..-.. +.+-++
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~-----~~~~~f 416 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS-----PNLRKF 416 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc-----ccHHHH
Confidence 999999889999999999999999999999999999999999999999888888888888888775322 123344
Q ss_pred hHHHHHHHh
Q 005686 565 MPPLIAKWQ 573 (683)
Q Consensus 565 ~~~l~~~~~ 573 (683)
+..+.+.+.
T Consensus 417 l~sLL~~f~ 425 (675)
T KOG0212|consen 417 LLSLLEMFK 425 (675)
T ss_pred HHHHHHHHh
Confidence 445555555
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.73 E-value=2.5e-13 Score=156.21 Aligned_cols=573 Identities=14% Similarity=0.060 Sum_probs=336.1
Q ss_pred CCCCHHHHHHHHHHHHHH-hc---------CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHH
Q 005686 26 SPSSTADKSQIWQQLQQY-SQ---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (683)
Q Consensus 26 s~~~~~~r~~A~~~L~~~-~~---------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~ 95 (683)
+++.. .+..|...|..+ .. ..+.++.|..+|.+ +.++.+|..|+-.|++..... ++.+..+.
T Consensus 200 S~d~~-lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s--g~~~~VRE~AA~AL~nLAs~s-----~e~r~~Iv 271 (2102)
T PLN03200 200 SGNSD-AQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ--GNEVSVRAEAAGALEALSSQS-----KEAKQAIA 271 (2102)
T ss_pred CCCHH-HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc--CCChHHHHHHHHHHHHHhcCC-----HHHHHHHH
Confidence 45666 788887766543 22 34678889998864 567799999999998776432 33333333
Q ss_pred -----HHHhhhhhcCC---------hHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccC-ChhHHhHH---------
Q 005686 96 -----SELLPCLGAAD---------RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGA--------- 151 (683)
Q Consensus 96 -----~~Ll~~l~~~~---------~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~-~~~~r~~a--------- 151 (683)
+.|+..+..++ ..++..+..+++.|+... +.+++.|.+.+.+. +......+
T Consensus 272 ~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 272 DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM-----SALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 34555554332 456788888999888642 44555555444332 11111111
Q ss_pred -----------------HHHHHHHHhhchhccc-----cCCCCCC-cch------hHhhHHHHHHhhcCCCHHHHHHHHH
Q 005686 152 -----------------MDALSKICEDIPQVLD-----SDVPGLA-ECP------INIFLPRLLQFFQSPHTSLRKLSLG 202 (683)
Q Consensus 152 -----------------l~~l~~l~~~~~~~~~-----~~~~~~~-~~~------~~~i~~~l~~~l~~~~~~vr~~a~~ 202 (683)
...|..+++.-..... +-...++ ... -.+..+.++..+...+.+++..++.
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 1223233322111000 0000000 000 0123445666677778999999999
Q ss_pred HHHHHHhccchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHHhhcCCChHHHH
Q 005686 203 SVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVAL 280 (683)
Q Consensus 203 ~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~vr~ 280 (683)
++..++...++....... ..++.|..++.+++...+..++..+..+.......-...+ ...++.+.+.+.+.+.+++.
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqe 506 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 999988664332221111 3578888888888899999999999888765443221111 24566677778888999999
Q ss_pred HHhhHHHHhhccCCchhhHHhhh--hhhHHHHHhhcccChhhhh---hhhhcccCCCCCccCCCCcccccccCCCCCCCC
Q 005686 281 EACEFWHSYFEAQLPHENLKEFL--PRLVPVLLSNMIYADDDES---LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (683)
Q Consensus 281 ~a~~~l~~l~~~~~~~~~~~~~l--~~l~~~l~~~l~~~~~d~~---~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (683)
.|..++++++... ...+..+ ...+|.++..+...+.... .|.-..-- .....+.+++++... .
T Consensus 507 eAawAL~NLa~~~---~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi-~~~d~~~I~~Lv~LL--------l 574 (2102)
T PLN03200 507 DSATVLWNLCCHS---EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLV-RTADAATISQLTALL--------L 574 (2102)
T ss_pred HHHHHHHHHhCCc---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH-hccchhHHHHHHHHh--------c
Confidence 9999999998652 1222223 2455666555544332211 11000000 000000111111110 0
Q ss_pred CCCccccccccHHHHHHHHHHHHHhhcCc-cc------hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhh
Q 005686 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD-EI------LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY 428 (683)
Q Consensus 356 ~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~------~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~ 428 (683)
.++ ......+...++.+...... +. ....++.+.+.+.+++ ...++.|++++..++.+..+...
T Consensus 575 sdd------~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs---~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 575 GDL------PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK---EETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred CCC------hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCChHHHH
Confidence 010 12444556666665443322 11 1357888999999887 89999999999999987655433
Q ss_pred hhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 005686 429 PHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATL 506 (683)
Q Consensus 429 ~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l 506 (683)
..+ ...+|.++..+.+.+..++..++|+|+.++...... ....+. ...++.|.+.+.+.+..++..|+.+|.++
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~----q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanL 721 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN----RKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH----HHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 322 347888999999999999999999999999643211 111223 34799999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHh--hhHHHHHHHhcCCCCCcchhh
Q 005686 507 EEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDI--LMPPLIAKWQQLPNSDKDLFP 584 (683)
Q Consensus 507 ~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~ 584 (683)
++.......-.-...++.|+..+...+.+.++.+..+|..+......+-.-+.|... .+.++...+.....+......
T Consensus 722 l~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~ 801 (2102)
T PLN03200 722 LSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSE 801 (2102)
T ss_pred HcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHH
Confidence 876532211112355788889999888888888989998888764322100122222 345566777654322233346
Q ss_pred HHhHHHHHHHHh-ccccc--cchH-----HHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHH
Q 005686 585 LLECFTSIAQAL-GAGFT--QFAQ-----PVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEG 650 (683)
Q Consensus 585 ~~~~l~~l~~~~-g~~f~--~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~ 650 (683)
+++.++.+++.- |..|+ ||.. .-+..+...|.. ..+.+.+.|++.+.++|.-
T Consensus 802 al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~--------------~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 802 ALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE--------------GHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred HHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc--------------CChHHHHHHHHHHHHHhcc
Confidence 888898888842 22333 2221 123334344422 2456777787777777643
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=5.1e-14 Score=137.64 Aligned_cols=410 Identities=15% Similarity=0.177 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHhc----CCC--hHHHHHHHhhhc--cCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhh
Q 005686 32 DKSQIWQQLQQYSQ----FPD--FNNYLAFILARA--EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG 103 (683)
Q Consensus 32 ~r~~A~~~L~~~~~----~p~--~~~~l~~il~~~--~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~ 103 (683)
.||+|...+.++-+ ..+ -+..++..++.+ .+.+.+-|..+.+-+- .+.-.-..=+..-.+.+..-++.+++
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlA-A~~iaLg~~~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLA-AVAIALGIKDAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHH-HHHHHhccccHHHHHHhhHHHHHhcc
Confidence 78888888776422 222 234455544422 1444555553322222 11111111112245566667777888
Q ss_pred cCChHHHHHHHHHHHHHHhhc---CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHh
Q 005686 104 AADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (683)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~---~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (683)
+.+..||..+|+.+..|++.. ....+++++..+.+...+++..+|. +.+.+..+.++...+-.+. -.++.
T Consensus 95 D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~t------FsL~~ 167 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESAST------FSLPE 167 (675)
T ss_pred CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccc------cCHHH
Confidence 999999999999988888764 4567899999999999888877755 4577888887765543222 23688
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH---hhCccchh
Q 005686 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI---EVRPSFLE 257 (683)
Q Consensus 181 i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~ 257 (683)
++|.+-.-+...++..|...++-+..+-...+-.+..+++.+++++++.++|+..++|...-.++..+. ...|..+
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~- 246 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM- 246 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-
Confidence 888888888888999999999999888766666788999999999999999999999866555555443 3444443
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccC
Q 005686 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (683)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~ 337 (683)
..+++++.++.-+.++++.++..|+..+..+... ....+.++++.++..+++++++++.-
T Consensus 247 -d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i--~g~~~l~~~s~il~~iLpc~s~~e~~----------------- 306 (675)
T KOG0212|consen 247 -DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI--PGRDLLLYLSGILTAILPCLSDTEEM----------------- 306 (675)
T ss_pred -CcccchhhccccccCCcHHHHHHHHHHHHHHhcC--CCcchhhhhhhhhhhcccCCCCCccc-----------------
Confidence 2345666766778888999999998777777665 55677888999988888888765421
Q ss_pred CCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH----HHHHhhcCc-c-chhhhHHHHHHHHccCCCCChhhHHH
Q 005686 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL----DVLSNVFGD-E-ILPTLMPVIQAKLSASGDEAWKDREA 411 (683)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l----~~l~~~~~~-~-~~~~l~~~l~~~l~~~~~~~~~~r~a 411 (683)
+++..+...- ..++...++ + -++.+++.+.++++++. -..|.+
T Consensus 307 ----------------------------~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~---~~tri~ 355 (675)
T KOG0212|consen 307 ----------------------------SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDR---EETRIA 355 (675)
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcch---HHHHHH
Confidence 2333333332 222222222 2 24588999999999887 899999
Q ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccC
Q 005686 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (683)
Q Consensus 412 al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~ 491 (683)
++.++..+-...+..+..+..++++.++..|.|.+..|-..+...+..++..-. ...+.+++..++++....
T Consensus 356 ~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~--------~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 356 VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN--------SPNLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc--------cccHHHHHHHHHHHHhhh
Confidence 999999998888888889999999999999999999999999988888886432 235567777888888776
Q ss_pred CccHHHHHHHHHHHHHHH
Q 005686 492 NKRVQEAACSAFATLEEE 509 (683)
Q Consensus 492 ~~~v~~~a~~al~~l~~~ 509 (683)
..-+...+.-.+..+|--
T Consensus 428 ~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 428 TKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred hHHHHhhhhHHHHHHHHH
Confidence 666777777777777643
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.71 E-value=1.6e-13 Score=157.88 Aligned_cols=569 Identities=14% Similarity=0.092 Sum_probs=337.6
Q ss_pred CCCCHHHHHHHHHHHHHHhc---------CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHh-----hccCCHhHH
Q 005686 26 SPSSTADKSQIWQQLQQYSQ---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA-----YKSMSPSNQ 91 (683)
Q Consensus 26 s~~~~~~r~~A~~~L~~~~~---------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~-----w~~l~~~~~ 91 (683)
+++.. +|..|...|..+.. .++.++.|+.+|. +.+++.|..|+-.|...-... |..+ -..
T Consensus 69 sg~~~-vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~---sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I--~v~ 142 (2102)
T PLN03200 69 SGTLG-AKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLK---SGSAEAQKAAAEAIYAVSSGGLSDHVGSKI--FST 142 (2102)
T ss_pred CCCHH-HHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHH---CCCHHHHHHHHHHHHHHHcCcchhhhhhhh--hhh
Confidence 56666 88888877777654 2567888999986 457999999998887754321 1110 012
Q ss_pred HHHHHHHhhhhhcC---ChHHHHHHHHHHHHHHhhcCcCChHH-----HHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 005686 92 QYIKSELLPCLGAA---DRHIRSTVGTIVSVVVQLGGIAGWLE-----LLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (683)
Q Consensus 92 ~~i~~~Ll~~l~~~---~~~vr~~~~~~l~~i~~~~~~~~~~~-----l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 163 (683)
....+.|+..+.+. +..++..+..+|..++... .+.|.. .+|.+...++++++..+..+..++..++...+
T Consensus 143 ~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~-en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~e 221 (2102)
T PLN03200 143 EGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST-DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFE 221 (2102)
T ss_pred cCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc-cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 34456777777664 3456677778888888653 455654 47889999999999999999999988876654
Q ss_pred hccccCCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccchhhHHhHH--HHHHHHHhhhCCCC------
Q 005686 164 QVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPS------ 234 (683)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~------ 234 (683)
+... . -.-...+|.+++++.+ +++.+|..|..+|..++...++. ...+. ..++.|++.+..++
T Consensus 222 e~~~-a------VIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~-r~~Iv~aGgIp~LI~lL~sp~~e~~~~ 293 (2102)
T PLN03200 222 SSIS-K------VLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA-KQAIADAGGIPALINATVAPSKEFMQG 293 (2102)
T ss_pred HHHH-H------HHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCCHHHHHHHHhCcchhhhcc
Confidence 3211 0 0124568999999976 56799999999999998754322 21111 23455555544333
Q ss_pred ---HHHHHHHHHHHHHHHhhCccchhhhHHHHH----------------HHHHHhhcCCChHHHH----HHhhHHHHhhc
Q 005686 235 ---AEVRKLVCAAFNLLIEVRPSFLEPHLRNLF----------------EYMLQVNKDTDDDVAL----EACEFWHSYFE 291 (683)
Q Consensus 235 ---~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~----------------~~~~~~~~~~~~~vr~----~a~~~l~~l~~ 291 (683)
...++.+..+|..++..... +.+++..++ ..++..+.+.++.++. .+...|..+++
T Consensus 294 ~~~~~Lqe~AvwALsNIcgg~~~-ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr 372 (2102)
T PLN03200 294 EFAQALQENAMGALANICGGMSA-LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLK 372 (2102)
T ss_pred ccchHHHHHHHHHHHHHhCCchh-hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhC
Confidence 34578888999988876533 223332211 1122223333333331 23456777777
Q ss_pred cCCch---hhHHhhhhhhHHHH--HhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccccc
Q 005686 292 AQLPH---ENLKEFLPRLVPVL--LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (683)
Q Consensus 292 ~~~~~---~~~~~~l~~l~~~l--~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~ 366 (683)
++... +.+.+.+..+++.. -..+... | .+++.+.-... . ...
T Consensus 373 ~k~p~~vqe~V~eALasl~gN~~l~~~L~~~--d-----------------aik~LV~LL~~--------~------~~e 419 (2102)
T PLN03200 373 PRDTKLVQERIIEALASLYGNAYLSRKLNHA--E-----------------AKKVLVGLITM--------A------TAD 419 (2102)
T ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhc--c-----------------chhhhhhhhcc--------C------CHH
Confidence 63211 11122221111111 0111100 0 01111110000 0 012
Q ss_pred HHHHHHHHHHHHHhhcCc---cc-hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhc
Q 005686 367 LRKCSAAALDVLSNVFGD---EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPL 441 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~---~~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~ 441 (683)
++..+..++..++..-.+ .+ -...+|.+.+++.+++ ...+..|+++++.++.+..+.....+ ...+|.+++.
T Consensus 420 vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s---~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 420 VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS---EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 677788888887755322 11 1246788889998877 88999999999999876654322222 2378999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhccc-chH--
Q 005686 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE-LAP-- 516 (683)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~-l~~-- 516 (683)
|.++++.+|..|+|+|+.++.+-. .....+ ...++.|++.|++.+++++..|+++|.+++...... +.+
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~------qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv 570 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSE------DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLT 570 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcH------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 999999999999999999987422 123333 257889999999888999999999999996432111 000
Q ss_pred ------------H-----------------------HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHH
Q 005686 517 ------------R-----------------------LEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL 561 (683)
Q Consensus 517 ------------~-----------------------l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 561 (683)
+ -...++.|..++.+.+....+.+..+|+.+...-.... ..-..
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~-~avv~ 649 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC-ESLAT 649 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHH-HHHHH
Confidence 0 01234455555555555556667777777765322111 11234
Q ss_pred HhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccc-cccch-HHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHH
Q 005686 562 DILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAG-FTQFA-QPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVV 638 (683)
Q Consensus 562 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~-f~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 638 (683)
...+|+++..+... +.+. ..+..+++.+....... -..+. ...++.+++.|.. .+.++++
T Consensus 650 agaIpPLV~LLss~---~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~--------------~d~~v~e 712 (2102)
T PLN03200 650 DEIINPCIKLLTNN---TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS--------------SSIEVAE 712 (2102)
T ss_pred cCCHHHHHHHHhcC---ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC--------------CChHHHH
Confidence 45678888877642 2223 35666777777532211 11112 2356777777753 2446888
Q ss_pred HHHHHHHHHHHHhccc--h--HHhHHhhcCCccccC
Q 005686 639 CCLDLLSGLAEGLGSG--I--ESLVISLFPNLTWKS 670 (683)
Q Consensus 639 ~a~~~l~~l~~~~~~~--~--~~~l~~i~p~l~~~~ 670 (683)
.|+.++..++...... + ...++.++.+|..++
T Consensus 713 ~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~ 748 (2102)
T PLN03200 713 QAVCALANLLSDPEVAAEALAEDIILPLTRVLREGT 748 (2102)
T ss_pred HHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCC
Confidence 8888888887654322 1 133555555555443
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.68 E-value=2.1e-12 Score=139.44 Aligned_cols=509 Identities=16% Similarity=0.147 Sum_probs=330.8
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh-cCCC---hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCH
Q 005686 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYS-QFPD---FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (683)
Q Consensus 13 ~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~-~~p~---~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~ 88 (683)
..+++..+++... .+.. .|+.+.+.|-.+. ...+ .....+..+. +.+...|..+-+++.... .-++
T Consensus 5 ~~~el~~~~~~~~-~~~~-~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~---s~~~~~Krl~yl~l~~~~-----~~~~ 74 (526)
T PF01602_consen 5 ISQELAKILNSFK-IDIS-KKKEALKKLIYLMMLGYDISFLFMEVIKLIS---SKDLELKRLGYLYLSLYL-----HEDP 74 (526)
T ss_dssp HHHHHHHHHHCSS-THHH-HHHHHHHHHHHHHHTT---GSTHHHHHCTCS---SSSHHHHHHHHHHHHHHT-----TTSH
T ss_pred HHHHHHHHHhcCC-CCHH-HHHHHHHHHHHHHHcCCCCchHHHHHHHHhC---CCCHHHHHHHHHHHHHHh-----hcch
Confidence 3456777777554 4555 7777777776643 2222 2333344333 778899998887775443 2345
Q ss_pred hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcccc
Q 005686 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (683)
Q Consensus 89 ~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (683)
+..-.+.+.+.+-+.++++.+|..+..+++.+.. +.-.+.+++.+.+++.++++.+|..|+.++..+.+..++..
T Consensus 75 ~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~-- 149 (526)
T PF01602_consen 75 ELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV-- 149 (526)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH--
T ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH--
Confidence 5556667777778889999999988888888873 45668899999999999999999999999999999877542
Q ss_pred CCCCCCcchhHh-hHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q 005686 169 DVPGLAECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (683)
Q Consensus 169 ~~~~~~~~~~~~-i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (683)
.. +++.+.+.+.|+++.|+.+|+.++..+ ...++.....++.+.+.+.+.+.++++-.+..+++.+..
T Consensus 150 ----------~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 150 ----------EDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRR 218 (526)
T ss_dssp ----------HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHh
Confidence 33 789999999999999999999999988 433333334455667777777788888888888888877
Q ss_pred HHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhc
Q 005686 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (683)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~ 327 (683)
++...+..-.. ..+++.+...+.+.++.|...|+.++..+... .. .+..+++.+...+..++
T Consensus 219 ~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~----~~~~~~~~L~~lL~s~~--------- 280 (526)
T PF01602_consen 219 YAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PE----LLQKAINPLIKLLSSSD--------- 280 (526)
T ss_dssp STSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HH----HHHHHHHHHHHHHTSSS---------
T ss_pred cccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hH----HHHhhHHHHHHHhhccc---------
Confidence 66554443311 34555555555566778888888888776554 11 44555666655554221
Q ss_pred ccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHc-cCCCCCh
Q 005686 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS-ASGDEAW 406 (683)
Q Consensus 328 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~~ 406 (683)
.++|..+.+++..++...+..+. .. .....++. +++ .
T Consensus 281 -------------------------------------~nvr~~~L~~L~~l~~~~~~~v~-~~-~~~~~~l~~~~d---~ 318 (526)
T PF01602_consen 281 -------------------------------------PNVRYIALDSLSQLAQSNPPAVF-NQ-SLILFFLLYDDD---P 318 (526)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHCCHCHHHHG-TH-HHHHHHHHCSSS---H
T ss_pred -------------------------------------chhehhHHHHHHHhhcccchhhh-hh-hhhhheecCCCC---h
Confidence 24788888888888877744333 22 22223444 666 8
Q ss_pred hhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC-CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHH
Q 005686 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (683)
Q Consensus 407 ~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (683)
..|..++..+..++.. ..+..+++.+.+.+.+ .++.+|..++..++.++...++ .....+..++
T Consensus 319 ~Ir~~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---------~~~~~v~~l~ 383 (526)
T PF01602_consen 319 SIRKKALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---------DAEWYVDTLL 383 (526)
T ss_dssp HHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---------SHHHHHHHHH
T ss_pred hHHHHHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---------hHHHHHHHHH
Confidence 8999999999888863 2334456666666643 3677999999999999987642 3455667777
Q ss_pred HHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHhccccCchhHHHhh
Q 005686 486 KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ-RRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (683)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 564 (683)
+.+......+...+...+..++....+.- ..++..+...+.+.. ...+..++-++|..+...+.. .....+
T Consensus 384 ~ll~~~~~~~~~~~~~~i~~ll~~~~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~----~~~~~~ 455 (526)
T PF01602_consen 384 KLLEISGDYVSNEIINVIRDLLSNNPELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIENT----ESAPDI 455 (526)
T ss_dssp HHHHCTGGGCHCHHHHHHHHHHHHSTTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTT----THHHHH
T ss_pred HhhhhccccccchHHHHHHHHhhcChhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCccccc----ccHHHH
Confidence 77776667888888888988887643332 234555566666543 234456777777776665540 134445
Q ss_pred hHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHH
Q 005686 565 MPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDL 643 (683)
Q Consensus 565 ~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 643 (683)
+..+.+.+.. ++..+ ..++.++..+....+.. ...+.+++.+.+..... ..+.++|+.|...
T Consensus 456 ~~~l~~~~~~---~~~~vk~~ilt~~~Kl~~~~~~~--~~~~~i~~~~~~~~~~~------------s~~~evr~Ra~~y 518 (526)
T PF01602_consen 456 LRSLIENFIE---ESPEVKLQILTALAKLFKRNPEN--EVQNEILQFLLSLATED------------SSDPEVRDRAREY 518 (526)
T ss_dssp HHHHHHHHTT---SHHHHHHHHHHHHHHHHHHSCST--THHHHHHHHHHCHHHHS-------------SSHHHHHHHHHH
T ss_pred HHHHHHhhcc---ccHHHHHHHHHHHHHHHhhCCch--hhHHHHHHHHHHHhccC------------CCCHHHHHHHHHH
Confidence 5555555542 23333 35666666666554321 11224444444333311 1467899999887
Q ss_pred HHHH
Q 005686 644 LSGL 647 (683)
Q Consensus 644 l~~l 647 (683)
+.-+
T Consensus 519 ~~ll 522 (526)
T PF01602_consen 519 LRLL 522 (526)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 32
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=5.4e-13 Score=144.63 Aligned_cols=486 Identities=15% Similarity=0.168 Sum_probs=333.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCH--hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSP--SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTC 139 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~--~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~ 139 (683)
+.+|+.|+++++-|-..++..-. ..+ -....|.......|++.+.-++..+++-++.+......+--.++...|+..
T Consensus 829 s~nph~R~A~~VWLLs~vq~l~~-~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~t 907 (1702)
T KOG0915|consen 829 SPNPHERQAGCVWLLSLVQYLGQ-QPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNT 907 (1702)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc-CchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHH
Confidence 78999999999988877765422 111 123455567777888888888888888888777665555556677777666
Q ss_pred hccCCh---------hHHhH----------HHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC-CHHHHHH
Q 005686 140 LDSNDI---------NHMEG----------AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKL 199 (683)
Q Consensus 140 l~s~~~---------~~r~~----------al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~vr~~ 199 (683)
+..+.. .+.+. .+..-..+|.-..+ . .-++++=.+++..++. .+.-|..
T Consensus 908 l~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-----l------~qPdLVYKFM~LAnh~A~wnSk~G 976 (1702)
T KOG0915|consen 908 LTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-----L------GQPDLVYKFMQLANHNATWNSKKG 976 (1702)
T ss_pred HhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-----c------CChHHHHHHHHHhhhhchhhcccc
Confidence 543221 11000 01111111111110 0 0144555566666653 4566777
Q ss_pred HHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHH
Q 005686 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (683)
Q Consensus 200 a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr 279 (683)
|..-|+.+.....+.+.|++..++|.|+..--||+..++......|+.++......+..|+.+|++-++..+.+.++.||
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVR 1056 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 77778888877677788999999999999988999999999999999999988889999999999999999999999999
Q ss_pred HHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCc
Q 005686 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (683)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~ 359 (683)
..++.++..+.+.+ ....+...++++...+++-| ||+.
T Consensus 1057 easclAL~dLl~g~-~~~~~~e~lpelw~~~fRvm----DDIK------------------------------------- 1094 (1702)
T KOG0915|consen 1057 EASCLALADLLQGR-PFDQVKEKLPELWEAAFRVM----DDIK------------------------------------- 1094 (1702)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHH----HHHH-------------------------------------
Confidence 99999999988763 23445555666655555433 1211
Q ss_pred cccccccHHHHHHHHHHHHHhhc-----------CccchhhhHHHHH-HHHccCCCCChhhHHHHHHHHHHHHhcchhhh
Q 005686 360 DIVNVWNLRKCSAAALDVLSNVF-----------GDEILPTLMPVIQ-AKLSASGDEAWKDREAAVLALGAIAEGCIKGL 427 (683)
Q Consensus 360 ~~~~~~~~r~~a~~~l~~l~~~~-----------~~~~~~~l~~~l~-~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~ 427 (683)
=++|.+|..+...+++.+ |.+++..++|++. +.+-+.- ..+|..++..+..++...++.+
T Consensus 1095 -----EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v---~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1095 -----ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKV---NEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccch---HHHHHHHHHHHHHHHHhchhhh
Confidence 048888887777776654 2256777788764 3333444 7899999999999999999999
Q ss_pred hhhHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHHHHhhh-----C-----------CCcchhhHHHHHHHHHHHhcc
Q 005686 428 YPHLSEIVAFLIPLLDDKF-PLIRSISCWTLSRFSKFIVQDI-----G-----------HQNGREQFEKVLMGLLKRILD 490 (683)
Q Consensus 428 ~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~-----~-----------~~~~~~~~~~~l~~l~~~l~d 490 (683)
.||+++++|.++..+..-. ..+-+.++.+.+.=.+.+.... + +......+..++|.+.+.+..
T Consensus 1167 kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG 1246 (1702)
T ss_pred cchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999887543 3444455555444333322110 0 001234577888888888875
Q ss_pred C-CccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHH
Q 005686 491 T-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLI 569 (683)
Q Consensus 491 ~-~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 569 (683)
+ .-..|..++..+..++..++.++.||...++..++..+++.++..++..-.++|.++....++-.. ++...++..
T Consensus 1247 sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~q-KLie~~l~~-- 1323 (1702)
T KOG0915|consen 1247 SVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQ-KLIETLLAD-- 1323 (1702)
T ss_pred cCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHH-HHHHHHHHH--
Confidence 4 356788899999999999999999999999999999999987778888888999998876554211 244433322
Q ss_pred HHHhcCCCCCcchhhHHhHHHHHHHHhccccccchHHHHHHHHHHHH
Q 005686 570 AKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (683)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~ 616 (683)
.+.+. ++.. ...+.++..|++.....+..|...++|.+.=...
T Consensus 1324 -~l~k~--es~~-siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ 1366 (1702)
T KOG0915|consen 1324 -LLGKD--ESLK-SISCATISNIANYSQEMLKNYASAILPLIFLAMH 1366 (1702)
T ss_pred -HhccC--CCcc-chhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHh
Confidence 22221 1111 2455666667777666788888888887664433
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.65 E-value=1.4e-12 Score=140.91 Aligned_cols=439 Identities=17% Similarity=0.153 Sum_probs=263.0
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHh-cCCChHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHH
Q 005686 19 RLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (683)
Q Consensus 19 ~~l~~~~s~~~~~~r~~A~~~L~~~~-~~p~~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 96 (683)
+++..+.+.|-+ .|+-+.-++..+. .+|+......+.+.++ .+.++.+|-.|...+.+. .+++..+.+..
T Consensus 46 ~vi~l~~s~~~~-~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i-------~~~~~~~~l~~ 117 (526)
T PF01602_consen 46 EVIKLISSKDLE-LKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI-------RTPEMAEPLIP 117 (526)
T ss_dssp HHHCTCSSSSHH-HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHH
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh-------cccchhhHHHH
Confidence 344444456666 7777777777754 3555433334433322 355677777776666543 24566666777
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHH-HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccC------
Q 005686 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE-LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD------ 169 (683)
Q Consensus 97 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~-l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~------ 169 (683)
.+.+.+.++++.||+.++.++..+.+.. ++..+. +++.+.+++.+.++.++.+|+.++..+ +..+.....-
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHH
Confidence 7777777777777777777777777764 333333 577777777777777777777777776 2111110000
Q ss_pred --------C------------CCCC---cchh--HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHH
Q 005686 170 --------V------------PGLA---ECPI--NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQ 224 (683)
Q Consensus 170 --------~------------~~~~---~~~~--~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~ 224 (683)
. ..+. .... ..+++.+...+.+.++.|...+++++..+.... +.+..+++
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-----~~~~~~~~ 270 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-----ELLQKAIN 270 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-----HHHHHHHH
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-----HHHHhhHH
Confidence 0 0000 0001 234444444444444455555555544332221 13345567
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhh
Q 005686 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP 304 (683)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 304 (683)
.+..++.++++++|-.+++.+..++...+..+. +....+. ....+++..+|..+++.+..++.. +.+.
T Consensus 271 ~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~---~l~~~~d~~Ir~~~l~lL~~l~~~----~n~~---- 338 (526)
T PF01602_consen 271 PLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILF---FLLYDDDPSIRKKALDLLYKLANE----SNVK---- 338 (526)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHH---HHHCSSSHHHHHHHHHHHHHH--H----HHHH----
T ss_pred HHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhh---eecCCCChhHHHHHHHHHhhcccc----cchh----
Confidence 777777888888888889888888887744443 2222221 223477888999999999888764 2222
Q ss_pred hhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc
Q 005686 305 RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (683)
Q Consensus 305 ~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~ 384 (683)
.+++.+..++....+ ..++..+...+..++..++.
T Consensus 339 ~Il~eL~~~l~~~~d---------------------------------------------~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 339 EILDELLKYLSELSD---------------------------------------------PDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHHHHHHHHHHHC-----------------------------------------------HHHHHHHHHHHHHHHHHHGS
T ss_pred hHHHHHHHHHHhccc---------------------------------------------hhhhhhHHHHHHHHHhccCc
Confidence 244444444321100 02678888899998888854
Q ss_pred cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC-CChhHHHHHHHHHHHHHHH
Q 005686 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~ 463 (683)
....+++.+.+.+...+ ......++..+..+....++.. ..++..+...+.+ .++.++..++|.+|.++..
T Consensus 374 -~~~~~v~~l~~ll~~~~---~~~~~~~~~~i~~ll~~~~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~ 445 (526)
T PF01602_consen 374 -DAEWYVDTLLKLLEISG---DYVSNEIINVIRDLLSNNPELR----EKILKKLIELLEDISSPEALAAAIWILGEYGEL 445 (526)
T ss_dssp -SHHHHHHHHHHHHHCTG---GGCHCHHHHHHHHHHHHSTTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred -hHHHHHHHHHHhhhhcc---ccccchHHHHHHHHhhcChhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence 33467777888887665 6777777887877776543322 2234455555543 6788999999999999998
Q ss_pred HHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHH--HhhHhHHHHH
Q 005686 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-ELAPRLEIILQHLMMAFG--KYQRRNLRIV 540 (683)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-~l~~~l~~i~~~L~~~l~--~~~~~~~~~~ 540 (683)
... .. ....++..+.+.+.+.++.+|..+..++.++....+. ...+ .+++.+.+... +.+.+++..+
T Consensus 446 ~~~------~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~---~i~~~~~~~~~~~s~~~evr~Ra 515 (526)
T PF01602_consen 446 IEN------TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN---EILQFLLSLATEDSSDPEVRDRA 515 (526)
T ss_dssp HTT------TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH---HHHHHHHCHHHHS-SSHHHHHHH
T ss_pred ccc------cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH---HHHHHHHHHhccCCCCHHHHHHH
Confidence 752 12 5677777888877777788999999999999876543 2332 45555555555 3344555566
Q ss_pred HHHHHHH
Q 005686 541 YDAIGTL 547 (683)
Q Consensus 541 ~~~l~~l 547 (683)
.+.+.-+
T Consensus 516 ~~y~~ll 522 (526)
T PF01602_consen 516 REYLRLL 522 (526)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555433
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=99.63 E-value=2.1e-11 Score=130.79 Aligned_cols=413 Identities=14% Similarity=0.138 Sum_probs=257.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHH
Q 005686 20 LLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSE 97 (683)
Q Consensus 20 ~l~~~~s~~~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~ 97 (683)
++....++|-+ .||-..-+|..+.+ +|+.....++.+.++ .+.++.+|-.|.-.+.. --.++..+.+...
T Consensus 73 Vvk~~~S~d~e-lKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~-------Ir~~~i~e~l~~~ 144 (746)
T PTZ00429 73 VVKLAPSTDLE-LKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMC-------IRVSSVLEYTLEP 144 (746)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc-------CCcHHHHHHHHHH
Confidence 33344455555 66666666666543 555322223333222 34566677666544432 1345666777777
Q ss_pred HhhhhhcCChHHHHHHHHHHHHHHhhcCcCC-hHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccc---------
Q 005686 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAG-WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD--------- 167 (683)
Q Consensus 98 Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~-~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~--------- 167 (683)
+.+++.+.++.||+.++-++..+.+..+... -.++++.+.+++.+.++.+...|+.+|..+.+..+..+.
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~L 224 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRL 224 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 8888899999999999999999988764221 124567777888999999999999999888755321100
Q ss_pred ----cCCCCC---------------CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHH-hHHHHHHHHH
Q 005686 168 ----SDVPGL---------------AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV-SMDQYLQGLF 227 (683)
Q Consensus 168 ----~~~~~~---------------~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~l~~l~ 227 (683)
++.... -......++..+...+++.++.|..+|++++..+....++.... .+..+-+.++
T Consensus 225 l~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv 304 (746)
T PTZ00429 225 VYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALL 304 (746)
T ss_pred HHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHH
Confidence 000000 01223456677777788888999999999998887654322222 2222334444
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhH
Q 005686 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (683)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~ 307 (683)
.+ ...+++++-.++..+..++..+|..+.+++..++ -...|+. .+|...++.+..++.... + ..++
T Consensus 305 ~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff----~~~~Dp~-yIK~~KLeIL~~Lane~N----v----~~IL 370 (746)
T PTZ00429 305 TL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFY----VRYSDPP-FVKLEKLRLLLKLVTPSV----A----PEIL 370 (746)
T ss_pred Hh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhh----cccCCcH-HHHHHHHHHHHHHcCccc----H----HHHH
Confidence 44 3456788889999999999999888877644322 2334444 589999999999987522 2 2233
Q ss_pred HHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccch
Q 005686 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL 387 (683)
Q Consensus 308 ~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 387 (683)
..+..+..+.+ ..+++.+..+++.++..++. ..
T Consensus 371 ~EL~eYa~d~D----------------------------------------------~ef~r~aIrAIg~lA~k~~~-~a 403 (746)
T PTZ00429 371 KELAEYASGVD----------------------------------------------MVFVVEVVRAIASLAIKVDS-VA 403 (746)
T ss_pred HHHHHHhhcCC----------------------------------------------HHHHHHHHHHHHHHHHhChH-HH
Confidence 33333322111 13788899999999987764 45
Q ss_pred hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc---CCCChhHHHHHHHHHHHHHHHH
Q 005686 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL---DDKFPLIRSISCWTLSRFSKFI 464 (683)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~ 464 (683)
..++..+.+++.+.. -. ...++..+..+....++. + +++.+...+ .=.++..|.+.+|.+|.+++.+
T Consensus 404 ~~cV~~Ll~ll~~~~---~~-v~e~i~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I 473 (746)
T PTZ00429 404 PDCANLLLQIVDRRP---EL-LPQVVTAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI 473 (746)
T ss_pred HHHHHHHHHHhcCCc---hh-HHHHHHHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence 577777878876543 22 234566776666544432 1 334444332 1256889999999999999876
Q ss_pred HhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHH
Q 005686 465 VQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEII 521 (683)
Q Consensus 465 ~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i 521 (683)
.. ...++..+++.+.+.++.||...+.+..++.-......++.+..+
T Consensus 474 ~~----------a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~v 520 (746)
T PTZ00429 474 EN----------GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRV 520 (746)
T ss_pred hh----------HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 42 234455555666666788999999988888766554444444343
No 35
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.63 E-value=2.5e-14 Score=141.52 Aligned_cols=273 Identities=19% Similarity=0.296 Sum_probs=189.7
Q ss_pred HHHHHHHHHHH-hccchhhHHhHHHHHHHHHhhh-------C--CCC-----HHHHHHHHHHHHHHHhhCccchhhhHHH
Q 005686 198 KLSLGSVNQFI-MLMPSALFVSMDQYLQGLFLLS-------N--DPS-----AEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (683)
Q Consensus 198 ~~a~~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~-------~--~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 262 (683)
...++++.++. ..+|+.+.+.+..+|..+...+ . |++ +.++..+|+.+....+.+.+.+.+|++.
T Consensus 58 ~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~ 137 (370)
T PF08506_consen 58 KLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPT 137 (370)
T ss_dssp HHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567776665 4578888888888887766532 1 111 3578889999999999999999999999
Q ss_pred HHHHHHHhhcC-----CChHHHHHHhhHHHHhhccCCchhh--HHhhhhhhHHH-HHhhcccChhhhhhhhhcccCCCCC
Q 005686 263 LFEYMLQVNKD-----TDDDVALEACEFWHSYFEAQLPHEN--LKEFLPRLVPV-LLSNMIYADDDESLVEAEEDESLPD 334 (683)
Q Consensus 263 l~~~~~~~~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~~-l~~~l~~~~~d~~~~~~~~~e~~~~ 334 (683)
++..+++.+.. ..+.+...|+.|+.++++....... .++++.+++.. +++.|..+++|+|.|++||.|
T Consensus 138 fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~E---- 213 (370)
T PF08506_consen 138 FVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEE---- 213 (370)
T ss_dssp HHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHH----
T ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHH----
Confidence 99888877532 2456777899999998876322212 26788888875 479999999999999998766
Q ss_pred ccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHc----cCCCCChhhHH
Q 005686 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS----ASGDEAWKDRE 410 (683)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~----~~~~~~~~~r~ 410 (683)
++|-.+ |. .+..+.|++|.+++..+++..++.+.+.+...+.+.++ ++ ..+|+.+.
T Consensus 214 ---YIrrd~-----------e~-----sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~-~~~w~~KD 273 (370)
T PF08506_consen 214 ---YIRRDL-----------EG-----SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNP-SNNWRSKD 273 (370)
T ss_dssp ---HHHHHS-----------CS-----S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TT-HHHHH
T ss_pred ---HHHhhc-----------cc-----cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCC-cccHHHHH
Confidence 444221 11 11237899999999999999988877777777777776 33 34599999
Q ss_pred HHHHHHHHHHhcchh---h---------hhhhHHH-HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH
Q 005686 411 AAVLALGAIAEGCIK---G---------LYPHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF 477 (683)
Q Consensus 411 aal~~l~~l~~~~~~---~---------~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 477 (683)
+|+..++.++..... + +..++.+ ++|-+. .-.+.+|.+|..|++.+..|-..++ ++.+
T Consensus 274 ~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--------~~~l 344 (370)
T PF08506_consen 274 GALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--------KEQL 344 (370)
T ss_dssp HHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---------HHHH
T ss_pred HHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--------HHHH
Confidence 999999999875521 1 1222221 333333 2225789999999999888876553 5688
Q ss_pred HHHHHHHHHHhccCCccHHHHHHHHH
Q 005686 478 EKVLMGLLKRILDTNKRVQEAACSAF 503 (683)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al 503 (683)
..++|.+...|.+++..|+..|+.|+
T Consensus 345 ~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 345 LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 89999999999999999999998875
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.5e-13 Score=135.31 Aligned_cols=357 Identities=16% Similarity=0.137 Sum_probs=254.9
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-----CChHHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccC
Q 005686 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----AGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSD 169 (683)
Q Consensus 96 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-----~~~~~l~~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (683)
+..+..+.+.++..+..+.+.+..+...+.. ..+..++|.+.+++. +.++..+..|..+|..++....+...--
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 4444555555555566666666666655421 234567888999886 5568999999999999998776643211
Q ss_pred CCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH--HHHHHHHhhhCCCCH-HHHHHHHHHHH
Q 005686 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSA-EVRKLVCAAFN 246 (683)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~-~~~~~~~~~l~ 246 (683)
.-...+|.|..++.+++..|+..|+.+|+.++...|. +.+++- ..++.|+.++..++. .....+..+|.
T Consensus 149 -------v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 149 -------VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred -------ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHH
Confidence 1246788899999999999999999999999866432 233221 346666666665444 56677888999
Q ss_pred HHHhhC-ccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhh
Q 005686 247 LLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (683)
Q Consensus 247 ~l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~ 325 (683)
.++... |..-...+..+++.+...+.+.|++|...|+-+++.+...+ .+.+
T Consensus 221 Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~--ne~i-------------------------- 272 (514)
T KOG0166|consen 221 NLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS--NEKI-------------------------- 272 (514)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--hHHH--------------------------
Confidence 998765 44333466788888888999999999988888887776541 1100
Q ss_pred hcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCC
Q 005686 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA 405 (683)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 405 (683)
+.. +-..+.|.+.+++..+.
T Consensus 273 ------------------------------------------q~v---------------i~~gvv~~LV~lL~~~~--- 292 (514)
T KOG0166|consen 273 ------------------------------------------QMV---------------IDAGVVPRLVDLLGHSS--- 292 (514)
T ss_pred ------------------------------------------HHH---------------HHccchHHHHHHHcCCC---
Confidence 000 00146677888888887
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 483 (683)
..++..|+.++|.++.|........+. ..+|.+...+. ++...+|+.|||+++.++..-+.. ...-.-..++|.
T Consensus 293 ~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~q----iqaVida~l~p~ 368 (514)
T KOG0166|consen 293 PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQ----IQAVIDANLIPV 368 (514)
T ss_pred cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHH----HHHHHHcccHHH
Confidence 889999999999988887654433333 37888888887 566679999999999998754432 122223568999
Q ss_pred HHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHH--HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhc
Q 005686 484 LLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE--IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (683)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~--~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (683)
|+..++..+.++|..|++||++++......-..|+- .+++.+..++...+.+....+++++..+.....
T Consensus 369 Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 369 LINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 999999888999999999999998877655556653 478888888866666667789999998887643
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.62 E-value=2.8e-10 Score=122.30 Aligned_cols=435 Identities=12% Similarity=0.064 Sum_probs=274.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH-hcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHH
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQY-SQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~-~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~ 93 (683)
.+|...|. +++.. .|+.|.+.+-.+ ....+.-....+++..-.+.+...|+..-+++.+. ....++.--.
T Consensus 35 ~ELr~~L~---s~~~~-~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~y-----a~~~pelalL 105 (746)
T PTZ00429 35 AELQNDLN---GTDSY-RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLST-----ARLQPEKALL 105 (746)
T ss_pred HHHHHHHH---CCCHH-HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----cccChHHHHH
Confidence 45555553 56666 777777776653 33333322222332211267899999998888765 2344665556
Q ss_pred HHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 005686 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (683)
Q Consensus 94 i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (683)
..+.+.+-+.++++.+|..+.+.++.|. .+...+.+++.+.+++.+.++.+|..|..++..+....++.+.
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~------ 176 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY------ 176 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc------
Confidence 6677777888999999987766665544 3456677888899999999999999999999999887665432
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc
Q 005686 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 174 ~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (683)
-..+++.+.+.+.|+++.|...|+.+|..+.+..|..+ ......+..++..+.+-++=.+..+++.|.. ..|
T Consensus 177 ----~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P 248 (746)
T PTZ00429 177 ----QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRP 248 (746)
T ss_pred ----ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCC
Confidence 13567778888999999999999999999987655433 2233445555555554444334445555533 222
Q ss_pred cchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCC
Q 005686 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (683)
Q Consensus 254 ~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~ 333 (683)
.. ......++..+...+++.++.|...|+.++..+.... ........+.++.+.++..+. ++
T Consensus 249 ~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L~s-s~--------------- 310 (746)
T PTZ00429 249 SD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTLSR-RD--------------- 310 (746)
T ss_pred CC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHhhC-CC---------------
Confidence 21 2233567777777788888899999999888776531 123333444444444433221 11
Q ss_pred CccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHH
Q 005686 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAV 413 (683)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal 413 (683)
..++..+.+.+..+....+.-+.+. +..+.-..+++ ..+|...+
T Consensus 311 -------------------------------~eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp----~yIK~~KL 354 (746)
T PTZ00429 311 -------------------------------AETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDP----PFVKLEKL 354 (746)
T ss_pred -------------------------------ccHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCc----HHHHHHHH
Confidence 1367777777777777665322221 22222222343 46899999
Q ss_pred HHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCc
Q 005686 414 LALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK 493 (683)
Q Consensus 414 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~ 493 (683)
..+..++.. ..+..++.-+.....+.+..++..++.++|+++..++ .....++..|++.+.+..
T Consensus 355 eIL~~Lane------~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~---------~~a~~cV~~Ll~ll~~~~- 418 (746)
T PTZ00429 355 RLLLKLVTP------SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD---------SVAPDCANLLLQIVDRRP- 418 (746)
T ss_pred HHHHHHcCc------ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh---------HHHHHHHHHHHHHhcCCc-
Confidence 999888763 2345566666777778888999999999999997653 455677777877776543
Q ss_pred cHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH--HHh-hHhHHHHHHHHHHHHHHHh
Q 005686 494 RVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF--GKY-QRRNLRIVYDAIGTLADAV 551 (683)
Q Consensus 494 ~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l--~~~-~~~~~~~~~~~l~~l~~~~ 551 (683)
.+...++.++..+++...+. + ++..|...+ ... +.+....++-.||..+...
T Consensus 419 ~~v~e~i~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I 473 (746)
T PTZ00429 419 ELLPQVVTAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI 473 (746)
T ss_pred hhHHHHHHHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence 34456778888887765432 1 334444322 111 1233445566666665543
No 38
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.58 E-value=1.1e-11 Score=122.65 Aligned_cols=529 Identities=15% Similarity=0.174 Sum_probs=305.8
Q ss_pred CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcC
Q 005686 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (683)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~ 125 (683)
-|+..++|-.+..+ -.+-+.|+.+.-+..+.-.-.-... -.....+..-+-.++.+....||-..|..++.+++..+
T Consensus 314 v~~llpfl~a~c~S--rkSw~aRhTgiri~qqI~~llG~s~-l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~ 390 (975)
T COG5181 314 VEELLPFLEALCGS--RKSWEARHTGIRIAQQICELLGRSR-LSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVG 390 (975)
T ss_pred cHHHHHHHHHHhcC--ccchhhhchhhHHHHHHHHHhCccH-HhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcC
Confidence 45555555444432 4466777766544433221110010 01222344444456677888999999999999999865
Q ss_pred c---CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHH
Q 005686 126 I---AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLG 202 (683)
Q Consensus 126 ~---~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~ 202 (683)
| ..+.+++..|.+..++..-.....-+.+.+.++-....+...+ .....+..++..+++++.+.....+.
T Consensus 391 Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h-------~tre~m~iv~ref~spdeemkk~~l~ 463 (975)
T COG5181 391 PYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACH-------DTREHMEIVFREFKSPDEEMKKDLLV 463 (975)
T ss_pred CcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhh-------hHHHHHHHHHHHhCCchhhcchhHHH
Confidence 5 4567777778777766554454555556655554444333222 23567778888999998887776665
Q ss_pred HHHHHHhc---cchhhHHhH-HHHHHHHH-----------------------------------hhhCCCCHHHHHHHHH
Q 005686 203 SVNQFIML---MPSALFVSM-DQYLQGLF-----------------------------------LLSNDPSAEVRKLVCA 243 (683)
Q Consensus 203 ~l~~~~~~---~~~~~~~~~-~~~l~~l~-----------------------------------~~~~~~~~~~~~~~~~ 243 (683)
....+... .|..+...+ +.++..++ +-..|+.+..|+-...
T Consensus 464 v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~ 543 (975)
T COG5181 464 VERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAG 543 (975)
T ss_pred HHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhH
Confidence 55443322 122222111 11222222 1122222222222222
Q ss_pred HHHHHHhhCcc-chhhh-HHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhh
Q 005686 244 AFNLLIEVRPS-FLEPH-LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (683)
Q Consensus 244 ~l~~l~~~~~~-~~~~~-l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~ 321 (683)
....++...+. -+... -..++..++..++..+..+ ...+.+++++.-. ..-..+||++.++..++..+.....
T Consensus 544 ~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vs--l~~r~kp~l~~ivStiL~~L~~k~p-- 618 (975)
T COG5181 544 LVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVS--LEFRGKPHLSMIVSTILKLLRSKPP-- 618 (975)
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeee--hhhccCcchHHHHHHHHHHhcCCCc--
Confidence 22222221110 00000 0111122222222111100 0111112221111 1223468899999988887764321
Q ss_pred hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc---Cc-cchhhhHHHHHHH
Q 005686 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---GD-EILPTLMPVIQAK 397 (683)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~---~~-~~~~~l~~~l~~~ 397 (683)
.+|.-|+.+.+.++..+ |+ ..+..+-..+.+.
T Consensus 619 --------------------------------------------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~ 654 (975)
T COG5181 619 --------------------------------------------DVRIRAADLMGSLAKVLKACGETKELAKLGNILYEN 654 (975)
T ss_pred --------------------------------------------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHh
Confidence 37888888888887766 44 6677788888888
Q ss_pred HccCCCCChhhHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhh
Q 005686 398 LSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (683)
Q Consensus 398 l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 476 (683)
+.... +++--..+.++.++.... -..+.|-+.+++|.+.+.|.+.|..|....+..+|.++..-+.. ....-
T Consensus 655 lge~y---pEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey----i~~rE 727 (975)
T COG5181 655 LGEDY---PEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY----IGVRE 727 (975)
T ss_pred cCccc---HHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc----CCHHH
Confidence 88776 777777677766665543 24567889999999999999999999999999999999866543 22233
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccC
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 556 (683)
.-.+.-.|+.+|...+..+|..|..+++.+.+..|. +.++..|++-++..+...+...--+|+.+++.+|+
T Consensus 728 WMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp--- 798 (975)
T COG5181 728 WMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP--- 798 (975)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc---
Confidence 345555677888888999999999999999887763 23444555555543322333444567777777763
Q ss_pred chhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCch
Q 005686 557 QPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKE 635 (683)
Q Consensus 557 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 635 (683)
| .++|.+..-+.. ....+ ..+++.++.+...+|..-..|+-.+.|.+-..|.+. |.-
T Consensus 799 ---f--sVlP~lm~dY~T---Pe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr--------------D~v 856 (975)
T COG5181 799 ---F--SVLPTLMSDYET---PEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR--------------DPV 856 (975)
T ss_pred ---h--hhHHHHHhcccC---chhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc--------------chH
Confidence 2 355665554432 11222 257888999999999988888888888655555432 344
Q ss_pred HHHHHHHHHHHHHHHhccc-----hHHhHHhhcCCccccCC
Q 005686 636 FVVCCLDLLSGLAEGLGSG-----IESLVISLFPNLTWKSP 671 (683)
Q Consensus 636 ~~~~a~~~l~~l~~~~~~~-----~~~~l~~i~p~l~~~~~ 671 (683)
-|..|.+++..++-.+..- +-..++-+.|.+...++
T Consensus 857 hRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sP 897 (975)
T COG5181 857 HRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSP 897 (975)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCc
Confidence 5788888888887655321 33455555566655443
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.9e-12 Score=129.02 Aligned_cols=349 Identities=14% Similarity=0.145 Sum_probs=255.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh-ccCCHhHHHHHHHHHhhhhh-cCChHHHHHHHHHHHHHHhhcCcC----ChHHHHHH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAY-KSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIA----GWLELLQA 135 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w-~~l~~~~~~~i~~~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~~~~----~~~~l~~~ 135 (683)
+.++..++.+...+++.+.+.- +.++.-.+..+...+.+.+. +.++.++..++-++..|+...... .-.+-+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 5677778888888888775431 33555566677777778775 567999999999999999864211 11234677
Q ss_pred HHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCH-HHHHHHHHHHHHHHhcc-ch
Q 005686 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLM-PS 213 (683)
Q Consensus 136 l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~vr~~a~~~l~~~~~~~-~~ 213 (683)
+.+++.+++..+++.++.+|+.++.+.+.. ++.+ .-..+++.++..+..++. .+...+.+++..++..- |.
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd~v------l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDC-RDYV------LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHH-HHHH------HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 889999999999999999999998876542 1111 124677788888877665 77788899999998764 55
Q ss_pred hhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 214 ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
.-...+..+++.|..++.+.|+++...++.++..+.+..++.+.-.+. .+++.++..+.+.+..++.-|+..+++++..
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG 309 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence 555667889999999999999999999999999999887776654443 4566666677777777777777777766543
Q ss_pred CCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 005686 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (683)
Q Consensus 293 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~ 372 (683)
.... ...
T Consensus 310 --~d~Q---------------------------------------------------------------------Tq~-- 316 (514)
T KOG0166|consen 310 --SDEQ---------------------------------------------------------------------TQV-- 316 (514)
T ss_pred --cHHH---------------------------------------------------------------------HHH--
Confidence 0000 000
Q ss_pred HHHHHHHhhcCccchhhhHHHHHHHHc-cCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChhHH
Q 005686 373 AALDVLSNVFGDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIR 450 (683)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~vr 450 (683)
. + -...+|.+..++. ++. -..|..|++.++.++.|..+.+...+. .++|.++..++..+..+|
T Consensus 317 -v-------i----~~~~L~~l~~ll~~s~~---~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~r 381 (514)
T KOG0166|consen 317 -V-------I----NSGALPVLSNLLSSSPK---ESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIR 381 (514)
T ss_pred -H-------H----hcChHHHHHHHhccCcc---hhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHH
Confidence 0 0 0145666777776 454 568999999999999998877765554 489999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCcchhhH--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 451 SISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
+.|+|+++.++..... ....|+ ..+++.+...|.-.+.++...+..++..+.+..
T Consensus 382 KEAawaIsN~ts~g~~-----~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 382 KEAAWAISNLTSSGTP-----EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHHHHHHHhhcccCCH-----HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 9999999998764322 233343 447788888886667777888888988887765
No 40
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.51 E-value=1.9e-10 Score=122.10 Aligned_cols=536 Identities=14% Similarity=0.103 Sum_probs=337.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc---CCChHHHHHH---HhhhccCCCHHHHHHHHHHHHHHHHHhhccCC
Q 005686 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAF---ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (683)
Q Consensus 14 ~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~---~p~~~~~l~~---il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~ 87 (683)
...+.+.++.....+.+ +...+..++..+.. .|++...+.. .++. .....+|..++-.++...... +
T Consensus 119 r~~lipf~~e~~~~~de-v~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~--~eet~vr~k~ve~l~~v~~~~----~ 191 (759)
T KOG0211|consen 119 RLELIPFLTEAEDDEDE-VLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLAT--VEETGVREKAVESLLKVAVGL----P 191 (759)
T ss_pred hhhhhhHHHHhccchhH-HHHHHHHHhcccchhccchhHHHHhhHHHHhhhH--HHHHHHHHHHHHHHHHHHHhc----C
Confidence 45677777777755555 88888888887654 4555444333 3332 445667999988887776553 2
Q ss_pred HhH-HHHHHHHHhhhhhcCC-hHHHHHHHHHHHHHHhhcC-cCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 88 PSN-QQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 88 ~~~-~~~i~~~Ll~~l~~~~-~~vr~~~~~~l~~i~~~~~-~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
++. +..+. .++..+...+ -.-|..++.+.+..+.... ...-.++.+...+..++.++.+|.++..-++.+......
T Consensus 192 ~~~~~~~lv-~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~ 270 (759)
T KOG0211|consen 192 KEKLREHLV-PLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES 270 (759)
T ss_pred hHHHHHHHH-HHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH
Confidence 222 22222 2222222222 1234556666666665543 334577788888889999999999999999999888776
Q ss_pred ccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 005686 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (683)
.. ....+++.+.+...|....||.+|+..+..+........ +....+.+.+++..+|+++.+|..+...
T Consensus 271 ~~----------~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~ 339 (759)
T KOG0211|consen 271 EI----------VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADK 339 (759)
T ss_pred HH----------HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhh
Confidence 43 246778888999999889999999999999988765433 4445678889999999999999988888
Q ss_pred HHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhh
Q 005686 245 FNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (683)
Q Consensus 245 l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~ 324 (683)
+..+....+. ........+.....+++...++|.....-...++..........-....++|.+.....+.
T Consensus 340 ~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~------- 410 (759)
T KOG0211|consen 340 FSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN------- 410 (759)
T ss_pred hhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc-------
Confidence 8877765444 1222345556666778777777776654444444331110011111223344432222211
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCC
Q 005686 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGD 403 (683)
Q Consensus 325 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~ 403 (683)
...+|.+.+.....+...+|. .....+.|.....+++..
T Consensus 411 ---------------------------------------~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~- 450 (759)
T KOG0211|consen 411 ---------------------------------------ALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDED- 450 (759)
T ss_pred ---------------------------------------cchHHHHHhccccccCccCCcCcCccccChhhhhhcchhh-
Confidence 113555554444444445554 566788888888888877
Q ss_pred CChhhHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHH
Q 005686 404 EAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (683)
Q Consensus 404 ~~~~~r~aal~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 482 (683)
..+|......+..+-... -.++..+....+|.+...-.|.++++|.+..+.+-.++.... ..++.+-+.
T Consensus 451 --~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--------~~~~~~~~~ 520 (759)
T KOG0211|consen 451 --PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--------VEFFDEKLA 520 (759)
T ss_pred --HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--------hHHhhHHHH
Confidence 888988887664333222 123445667788888888888899999999888888876553 233333333
Q ss_pred HH-HHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHH
Q 005686 483 GL-LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL 561 (683)
Q Consensus 483 ~l-~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 561 (683)
.+ ...+.|....+|.+|+..+..+++..|. .=+...+++.+.....+.+...+...+.++..++..+|.++ +.
T Consensus 521 ~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~ 594 (759)
T KOG0211|consen 521 ELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TC 594 (759)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HH
Confidence 33 3445566688999999999999999882 23455666666666655445667788999999999999875 56
Q ss_pred HhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHH
Q 005686 562 DILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCC 640 (683)
Q Consensus 562 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 640 (683)
+.++|.+..... +..+.+ ..++..+..+...+... -.+..+-.+...|.. | .+.+.|-.|
T Consensus 595 ~~Llp~~~~l~~---D~vanVR~nvak~L~~i~~~L~~~---~~~~~v~pll~~L~~------d-------~~~dvr~~a 655 (759)
T KOG0211|consen 595 EDLLPVFLDLVK---DPVANVRINVAKHLPKILKLLDES---VRDEEVLPLLETLSS------D-------QELDVRYRA 655 (759)
T ss_pred HHHhHHHHHhcc---CCchhhhhhHHHHHHHHHhhcchH---HHHHHHHHHHHHhcc------C-------cccchhHHH
Confidence 677777655332 223344 45666666665555441 111122222222221 1 345566667
Q ss_pred HHHHHHHHHHhc
Q 005686 641 LDLLSGLAEGLG 652 (683)
Q Consensus 641 ~~~l~~l~~~~~ 652 (683)
..+++.+....-
T Consensus 656 ~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 656 ILAFGSIELSRL 667 (759)
T ss_pred HHHHHHHHHHHH
Confidence 666776665544
No 41
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.7e-10 Score=122.55 Aligned_cols=572 Identities=16% Similarity=0.224 Sum_probs=306.9
Q ss_pred CHHhHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCC
Q 005686 10 QEQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (683)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~--~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~ 87 (683)
+.....++..++....+| +++ .|.+|.+.+.+++..|+.|.....++.. +..+.+|++|..+|-+.++.+|+.++
T Consensus 5 ~~~l~~~lldavv~~~~~~~s~~-~r~eA~~~l~~lke~~~~~~~~~~iL~~--s~~~~~k~f~Lqlle~vik~~W~~~~ 81 (1041)
T KOG2020|consen 5 DNKLDSELLDAVVVTLNPEGSNE-ERGEAQQILEELKEEPDSWLQVYLILKL--STNPILKYFALQLLENVIKFRWNSLP 81 (1041)
T ss_pred chhHHHHHHHhHHHHhCcccchH-HHHHHHHHHHHHHhCcchHHHHHHHHhc--cCCchhheeeHHHHHHHHHHhcccCC
Confidence 344456677777777776 455 9999999999999999999988888875 68999999999999999999999999
Q ss_pred HhHHHHHHHHHhhhhh--cC-------ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHH
Q 005686 88 PSNQQYIKSELLPCLG--AA-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (683)
Q Consensus 88 ~~~~~~i~~~Ll~~l~--~~-------~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l 158 (683)
.+.+..+|..++.... ++ ...++.+++.++..|++.+|++.||++++.+.+.... +...++.++.++..+
T Consensus 82 ~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 82 VEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT-SETVCELSMIILLLL 160 (1041)
T ss_pred ccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc-CcccchHHHHHHHHH
Confidence 9999999999998653 11 3456788999999999999999999999999998873 456777788888888
Q ss_pred HhhchhccccCCCCCCcchhH---------------------------hhHHHHHHhhcC--------------------
Q 005686 159 CEDIPQVLDSDVPGLAECPIN---------------------------IFLPRLLQFFQS-------------------- 191 (683)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~---------------------------~i~~~l~~~l~~-------------------- 191 (683)
.+.....-.......-...++ ..++.+..++..
T Consensus 161 sEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~~l 240 (1041)
T KOG2020|consen 161 SEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFETNILELLLNKFL 240 (1041)
T ss_pred HHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHhcc
Confidence 777654322110000000000 011111111111
Q ss_pred CCHHHHHHHHHHHHHHHhccch----hhHHhHHHHHH---HHHhhh---------CCCCH-HHHHHHHHHHHHHHhhCcc
Q 005686 192 PHTSLRKLSLGSVNQFIMLMPS----ALFVSMDQYLQ---GLFLLS---------NDPSA-EVRKLVCAAFNLLIEVRPS 254 (683)
Q Consensus 192 ~~~~vr~~a~~~l~~~~~~~~~----~~~~~~~~~l~---~l~~~~---------~~~~~-~~~~~~~~~l~~l~~~~~~ 254 (683)
..+..|..|++|+..++..... ...+.+...+. .+...+ .+.+. ..-+.-+..+..+.+....
T Consensus 241 n~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~~~ 320 (1041)
T KOG2020|consen 241 NAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQHIA 320 (1041)
T ss_pred chHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1355666666666666544211 00011111111 111111 11111 2223333334333333222
Q ss_pred chhh-------hHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhh-----------------------
Q 005686 255 FLEP-------HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP----------------------- 304 (683)
Q Consensus 255 ~~~~-------~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~----------------------- 304 (683)
.+++ ++..+...+.....++..-.+. +++.|..+.......+ .|++.
T Consensus 321 lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~-~ld~W~~lv~~l~~~~--~~ll~~s~~~~~~~~~~ri~~rk~~y~~ 397 (1041)
T KOG2020|consen 321 LLESSLSQRPVLLEALLELILISTIEPSEIFKI-CLDYWNKLVADLYYNK--PPLLQLSTTLPSISDYSRIDFRKSIYQE 397 (1041)
T ss_pred HHcCchhhhhHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHhhhccc--ccccccccccccccchhccchHHHHHHH
Confidence 2222 2222333332223334443444 8999998766511110 11111
Q ss_pred ---hhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh
Q 005686 305 ---RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV 381 (683)
Q Consensus 305 ---~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~ 381 (683)
+.--..+..|...+.-. .-+++ . -+.+|... . |.+-. .......+++...+-.
T Consensus 398 ~~~~~r~l~l~~m~~Pe~vl--ive~~-~-----~~~vre~~----------~---~~~~~---~ly~~~~e~l~~~~~L 453 (1041)
T KOG2020|consen 398 FLSKLRLLRLERMAKPEEVL--IVENE-Q-----GEIVREFM----------K---DHDFI---TLYPVLRETLVYLLHL 453 (1041)
T ss_pred HHHHHHHHHHHHhcCchhee--EEech-H-----HHHHHHhc----------c---Ccchh---hhhHHHHHHHHHHHHh
Confidence 11111111111111000 00000 0 00000000 0 00000 1111222222222111
Q ss_pred cCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHhhccC-----CCChhHHHHHHH
Q 005686 382 FGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLD-----DKFPLIRSISCW 455 (683)
Q Consensus 382 ~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~ 455 (683)
.+..+-....+.+...+.+. ..+|+...--++++++++....+. ....+..++.-++...+ |....+-...+.
T Consensus 454 ~~~~t~~~~~~kl~~~l~~~-~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~ 532 (1041)
T KOG2020|consen 454 DVVDTEKIMTEKLAIQLDGD-EWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMY 532 (1041)
T ss_pred hhhhhhhhhhHhHHHHhhHH-HHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Confidence 11111111222233333322 223677777778888665533222 22333333222222221 322333333444
Q ss_pred HHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHH
Q 005686 456 TLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE--------ELAPRLEIILQHLMM 527 (683)
Q Consensus 456 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~--------~l~~~l~~i~~~L~~ 527 (683)
.+|++-.+.. .+..++...+..+.+.++.....|+..+|..+..++..+.. ...|+.+.++..+..
T Consensus 533 vv~q~p~Fl~------~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~ 606 (1041)
T KOG2020|consen 533 VVGQYPRFLK------AHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTA 606 (1041)
T ss_pred HhcccchHHH------HHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccc
Confidence 5554443333 23566677888888888888888999999999999988753 356789999999999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCC----CCCc-----c----hhhHHhHHHHHHH
Q 005686 528 AFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP----NSDK-----D----LFPLLECFTSIAQ 594 (683)
Q Consensus 528 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~-----~----~~~~~~~l~~l~~ 594 (683)
.+...+...+...+++++.++.+-........+....+-.-...|.+.. ..+. + +...+.+...+++
T Consensus 607 i~~~l~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~ 686 (1041)
T KOG2020|consen 607 ITEDLQPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALT 686 (1041)
T ss_pred hhcCchHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHH
Confidence 9988887888888899995444332222112333333322222333311 0111 1 1245677888888
Q ss_pred HhccccccchHHHHHHHHHHHHHHH
Q 005686 595 ALGAGFTQFAQPVFQRCINIIQTQQ 619 (683)
Q Consensus 595 ~~g~~f~~~~~~~~~~l~~~l~~~~ 619 (683)
.+|..|.+-...++...++++....
T Consensus 687 sl~~~f~~~~~~~~~d~~~l~~~~s 711 (1041)
T KOG2020|consen 687 SLGSTFVPQLGKIYLDMLQLYIKQS 711 (1041)
T ss_pred hcCcccccccccccHHHHHHHHHhc
Confidence 8999998888888877777766543
No 42
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.1e-08 Score=107.74 Aligned_cols=539 Identities=14% Similarity=0.116 Sum_probs=304.6
Q ss_pred CCCHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-hc------CCC------------hHHHHHHHhhhccCCCHHHH
Q 005686 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQY-SQ------FPD------------FNNYLAFILARAEGKSVEIR 68 (683)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~-~~------~p~------------~~~~l~~il~~~~~~~~~~R 68 (683)
+++|+.+..+.+++..-- -+-. +|+.|.-+|++. .+ .|+ +-..++..+. ..+.-+|
T Consensus 32 ~K~pgFv~~lLqIi~~d~-~~l~-vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv---~~p~~iR 106 (1010)
T KOG1991|consen 32 EKQPGFVSSLLQIIMDDG-VPLP-VRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIV---QVPELIR 106 (1010)
T ss_pred hcCCcHHHHHHHHHHccC-Cchh-HHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHH---hCchHHH
Confidence 345555555555544311 1334 899999999873 21 122 1224455444 4477889
Q ss_pred HHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-Cc-----CC----hHHHHHHHHH
Q 005686 69 QAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GI-----AG----WLELLQALVT 138 (683)
Q Consensus 69 ~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-~~-----~~----~~~l~~~l~~ 138 (683)
..-..++++.+...++ +....+...+-..|.+++...-..+--++..+++.. +. .. ..+++|.+.+
T Consensus 107 vql~~~l~~Ii~~D~p----~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~ 182 (1010)
T KOG1991|consen 107 VQLTACLNTIIKADYP----EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQ 182 (1010)
T ss_pred HHHHHHHHHHHhcCCc----ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH
Confidence 8888888888765433 233345556666777777777778888888888764 21 11 2334455444
Q ss_pred ----HhccCChhHHhHHH---HHHHHHHhh-chhccccCCCCCCcchhHhhHHHHHHhhcCC-----------------C
Q 005686 139 ----CLDSNDINHMEGAM---DALSKICED-IPQVLDSDVPGLAECPINIFLPRLLQFFQSP-----------------H 193 (683)
Q Consensus 139 ----~l~s~~~~~r~~al---~~l~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-----------------~ 193 (683)
.+.+++....+... .++..++.. .+..+.. ...+...+..++..++.+ .
T Consensus 183 ~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~------~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~w 256 (1010)
T KOG1991|consen 183 IFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSA------PETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPW 256 (1010)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhC------chhHHHHHHHHHHHHcCCCChhcccCChhhcccccc
Confidence 44455544333332 222222221 2222221 123455566666666542 2
Q ss_pred HHHHHHHHHHHHHHHhccc-h--------hhH-----HhHHHHHHHHHhhhC---C---CCHHHHHHHHHHHHHHHhh--
Q 005686 194 TSLRKLSLGSVNQFIMLMP-S--------ALF-----VSMDQYLQGLFLLSN---D---PSAEVRKLVCAAFNLLIEV-- 251 (683)
Q Consensus 194 ~~vr~~a~~~l~~~~~~~~-~--------~~~-----~~~~~~l~~l~~~~~---~---~~~~~~~~~~~~l~~l~~~-- 251 (683)
.+.++-|+..+..+++... + .+. .+...+++.+++.+. . -.+++-..++..+...+..
T Consensus 257 wK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~ 336 (1010)
T KOG1991|consen 257 WKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHAS 336 (1010)
T ss_pred hhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHH
Confidence 3467789999988886432 1 111 122344455554432 1 1234445555555555543
Q ss_pred CccchhhhHHHHHHHHH-H--hhcCCC---------hHH-------------HHHHhhHHHHhhccCCchhhHHhhhhhh
Q 005686 252 RPSFLEPHLRNLFEYML-Q--VNKDTD---------DDV-------------ALEACEFWHSYFEAQLPHENLKEFLPRL 306 (683)
Q Consensus 252 ~~~~~~~~l~~l~~~~~-~--~~~~~~---------~~v-------------r~~a~~~l~~l~~~~~~~~~~~~~l~~l 306 (683)
..+.++||++.++.-++ - ++++.+ +.+ +.+|+.++..+++.. ..+.+.++++-+
T Consensus 337 twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR-~ke~l~k~l~F~ 415 (1010)
T KOG1991|consen 337 TWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKR-GKETLPKILSFI 415 (1010)
T ss_pred HHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhc-chhhhhhHHHHH
Confidence 34778999987766432 1 222222 222 456777787777651 234444444444
Q ss_pred HHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc--
Q 005686 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-- 384 (683)
Q Consensus 307 ~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-- 384 (683)
+.++...-..+. +.........|...++.++..+.+
T Consensus 416 ~~Il~~~~~~~~------------------------------------------~~~~~rqkdGAL~~vgsl~~~L~K~s 453 (1010)
T KOG1991|consen 416 VDILTRYKEASP------------------------------------------PNKNPRQKDGALRMVGSLASILLKKS 453 (1010)
T ss_pred HHHHHhhcccCC------------------------------------------CccChhhhhhHHHHHHHHHHHHccCC
Confidence 444432211110 000112234466677777766533
Q ss_pred ----cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhc-chhhhhhhHHHHHHHHhhccC-CCChhHHHHHHHHHH
Q 005686 385 ----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG-CIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLS 458 (683)
Q Consensus 385 ----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~ 458 (683)
++-..+.+++...++++. -..|.-||+.++.+++. .++ ...+.+++..+.++|. |.+-.||-.|+.+|.
T Consensus 454 ~~~~~mE~flv~hVfP~f~s~~---g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq 528 (1010)
T KOG1991|consen 454 PYKSQMEYFLVNHVFPEFQSPY---GYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQ 528 (1010)
T ss_pred chHHHHHHHHHHHhhHhhcCch---hHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHH
Confidence 222345567777788887 78999999999999853 221 2456678888888887 888889999999999
Q ss_pred HHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh------
Q 005686 459 RFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY------ 532 (683)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~------ 532 (683)
.+....... +....+++++++..+++..++.+... -...|..++...++.+.||...+++.|...+.+.
T Consensus 529 ~fI~~~~~~--~e~~~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~ 603 (1010)
T KOG1991|consen 529 SFISNQEQA--DEKVSAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSED 603 (1010)
T ss_pred HHHhcchhh--hhhHhhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCC
Confidence 998876532 12356777888888888777644332 3456777888889999999999888887666432
Q ss_pred -----hHhHH--HHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCC-CCCcch-hhHHhHHHHHHHHhccccccc
Q 005686 533 -----QRRNL--RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP-NSDKDL-FPLLECFTSIAQALGAGFTQF 603 (683)
Q Consensus 533 -----~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~~~~~l~~l~~~~g~~f~~~ 603 (683)
+++.+ ..++.++.+++.++.+. |..+.++-|.+.......- ++-.+. ..+++.+..+ ....+..+|-
T Consensus 604 ~~~~~ddk~iaA~GiL~Ti~Til~s~e~~---p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~-t~~~~~Isp~ 679 (1010)
T KOG1991|consen 604 EDESDDDKAIAASGILRTISTILLSLENH---PEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSL-TFLSKEISPI 679 (1010)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh-hhhhcccCHH
Confidence 11222 25677777777776543 2344444444433322210 011221 1233333222 2244567777
Q ss_pred hHHHHHHHHHHHHHH
Q 005686 604 AQPVFQRCINIIQTQ 618 (683)
Q Consensus 604 ~~~~~~~l~~~l~~~ 618 (683)
+-++++.+++++.+.
T Consensus 680 mW~ll~li~e~~~~~ 694 (1010)
T KOG1991|consen 680 MWGLLELILEVFQDD 694 (1010)
T ss_pred HHHHHHHHHHHHhhh
Confidence 777888777777664
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.48 E-value=1.6e-11 Score=138.47 Aligned_cols=273 Identities=22% Similarity=0.212 Sum_probs=192.7
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCc
Q 005686 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (683)
Q Consensus 96 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (683)
+.|++.|.++++.||..++..|+.+.. ++.++.|.+.+.++++.+|..++..|..+.+....
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~----------- 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP----------- 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----------
Confidence 456677788899999999888887642 45778888888899999999999988776542221
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 005686 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (683)
Q Consensus 176 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (683)
.+.+...|.++++.||..|+.+|..+-... ...+...+.|+++.+|..++..|..+-..
T Consensus 686 ------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~---- 744 (897)
T PRK13800 686 ------APALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV---- 744 (897)
T ss_pred ------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc----
Confidence 134566778889999999998887753211 12344567888999999999888864110
Q ss_pred hhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCc
Q 005686 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (683)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~ 335 (683)
+.+...+.|+++.||..+...|..+..... . .++.+...+.+
T Consensus 745 ---------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--~--------~~~~L~~ll~D------------------- 786 (897)
T PRK13800 745 ---------ESVAGAATDENREVRIAVAKGLATLGAGGA--P--------AGDAVRALTGD------------------- 786 (897)
T ss_pred ---------HHHHHHhcCCCHHHHHHHHHHHHHhccccc--h--------hHHHHHHHhcC-------------------
Confidence 123456788899999999988888754311 0 01222222221
Q ss_pred cCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHH
Q 005686 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (683)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~ 415 (683)
.++.+|.++..+|+.+... +.+.+.+...+.+++ |.+|.+|+.+
T Consensus 787 ---------------------------~d~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~d~d---~~VR~~Aa~a 830 (897)
T PRK13800 787 ---------------------------PDPLVRAAALAALAELGCP------PDDVAAATAALRASA---WQVRQGAARA 830 (897)
T ss_pred ---------------------------CCHHHHHHHHHHHHhcCCc------chhHHHHHHHhcCCC---hHHHHHHHHH
Confidence 0135888988887765321 123455777888888 9999999999
Q ss_pred HHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccH
Q 005686 416 LGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV 495 (683)
Q Consensus 416 l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v 495 (683)
|+.+.. ++.++.+...|+|+++.||..|+++|+++. . . +...+.|...++|+++.|
T Consensus 831 L~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~----~-------~---~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 831 LAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP----G-------D---PAARDALTTALTDSDADV 886 (897)
T ss_pred HHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC----C-------C---HHHHHHHHHHHhCCCHHH
Confidence 987643 224578888999999999999999999971 0 1 234566667788999999
Q ss_pred HHHHHHHHHH
Q 005686 496 QEAACSAFAT 505 (683)
Q Consensus 496 ~~~a~~al~~ 505 (683)
|..|..+|..
T Consensus 887 r~~A~~aL~~ 896 (897)
T PRK13800 887 RAYARRALAH 896 (897)
T ss_pred HHHHHHHHhh
Confidence 9999999863
No 44
>PRK09687 putative lyase; Provisional
Probab=99.47 E-value=1.6e-11 Score=117.75 Aligned_cols=253 Identities=15% Similarity=0.120 Sum_probs=181.4
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc
Q 005686 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 133 ~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (683)
++.|...+.+.+..+|..++..|+.+-. ..+++.+...+.++++.+|..+..+|+.+...-.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 4667777789999999999999865321 4567778888999999999999999999753210
Q ss_pred hhhHHhHHHHHHHHHhh-hCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhc
Q 005686 213 SALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (683)
Q Consensus 213 ~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 291 (683)
.....++.|..+ .+|+++.||..++.+|..+....... .+..++.+.....|.++.||..+...|+.+..
T Consensus 87 -----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 87 -----CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred -----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 022345556554 57889999999999999875433222 23455556667788899999999988865532
Q ss_pred cCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 005686 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (683)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a 371 (683)
. ..++.|+..+.+ .+|.+|..|
T Consensus 158 ~------------~ai~~L~~~L~d----------------------------------------------~~~~VR~~A 179 (280)
T PRK09687 158 E------------AAIPLLINLLKD----------------------------------------------PNGDVRNWA 179 (280)
T ss_pred H------------HHHHHHHHHhcC----------------------------------------------CCHHHHHHH
Confidence 1 233444443332 113589999
Q ss_pred HHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHH
Q 005686 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRS 451 (683)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 451 (683)
..+|+.+. .+ -+...+.+...+.+.+ |.+|.+|+.+|+.+.. +..+|.+++.+++++ +|.
T Consensus 180 ~~aLg~~~--~~---~~~~~~~L~~~L~D~~---~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~ 239 (280)
T PRK09687 180 AFALNSNK--YD---NPDIREAFVAMLQDKN---EEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGD 239 (280)
T ss_pred HHHHhcCC--CC---CHHHHHHHHHHhcCCC---hHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHH
Confidence 99888771 11 2356677778888888 9999999999987543 346888888998866 677
Q ss_pred HHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhc-cCCccHHHHHHHHHHH
Q 005686 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFAT 505 (683)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~ 505 (683)
.++.+||.+.. +..+|.|.+.++ ++++.|+..|..++..
T Consensus 240 ~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 240 LIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 88888888853 356777777776 6788999999888764
No 45
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.43 E-value=4.4e-10 Score=119.34 Aligned_cols=423 Identities=16% Similarity=0.136 Sum_probs=293.7
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-------CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc
Q 005686 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (683)
Q Consensus 13 ~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~-------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~ 85 (683)
.-.++.+..+.+..-++.++|+.+.+.+..+.+ .....+.+.++.. +....+|..|.-.+-... ...+.
T Consensus 234 vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~---DdqdsVr~~a~~~~~~l~-~l~~~ 309 (759)
T KOG0211|consen 234 VKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR---DDQDSVREAAVESLVSLL-DLLDD 309 (759)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh---cchhhHHHHHHHHHHHHH-HhcCC
Confidence 335566666666554444599999999988653 2234444555444 445788987776654443 22222
Q ss_pred CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 86 l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
+.+....+.+.+++...+.++.+|...+.....+.... +...|+++.+.....+++..+..|.+...-...++.....
T Consensus 310 -~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 310 -DDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred -chhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence 11677778888888888999999999988888887664 4578999999999999998888888887777777766553
Q ss_pred ccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 005686 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (683)
.-..+ -..+.++|.+.....+.+..||.+............| ....+..+++.+...++|..+.+|......
T Consensus 389 ~~~~~------i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ 460 (759)
T KOG0211|consen 389 SCYPN------IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDK 460 (759)
T ss_pred ccccc------cchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHH
Confidence 22222 2246678999999999999999987766655544444 223344567778888888889999988876
Q ss_pred HHHHHhhCc-cchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhh
Q 005686 245 FNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (683)
Q Consensus 245 l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 323 (683)
+..+..... .-+..+.+..++.+.....+..+.+|...++++-.++... +.+.+.+ ++.+.+..++.+
T Consensus 461 ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~-~~~~~~~---~~~~l~~~~l~d------- 529 (759)
T KOG0211|consen 461 LSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL-GVEFFDE---KLAELLRTWLPD------- 529 (759)
T ss_pred HHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh-hhHHhhH---HHHHHHHhhhhh-------
Confidence 644433322 2233455677777777777778889999999888777651 1122222 222333333221
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCC
Q 005686 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASG 402 (683)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~ 402 (683)
..+.+|.++...+..++..+|. .....+++.+.....+++
T Consensus 530 ---------------------------------------~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~ 570 (759)
T KOG0211|consen 530 ---------------------------------------HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDN 570 (759)
T ss_pred ---------------------------------------hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcc
Confidence 1236899999999999999995 334466666666666666
Q ss_pred CCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHH
Q 005686 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (683)
Q Consensus 403 ~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 482 (683)
|..|.+.+.++..+++.++..+ +...++|.+.....|+.+.||-.++..+-.+.+.+... ..=..+.|
T Consensus 571 ---y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~-------~~~~~v~p 638 (759)
T KOG0211|consen 571 ---YLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES-------VRDEEVLP 638 (759)
T ss_pred ---cchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH-------HHHHHHHH
Confidence 9999999999999998776543 34557899999999999999999999999998877532 22233444
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 483 GLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
.+.....|++..+|..|..|++.+....
T Consensus 639 ll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 639 LLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 4444455888999999999998775543
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.42 E-value=2.1e-09 Score=112.94 Aligned_cols=357 Identities=17% Similarity=0.136 Sum_probs=239.3
Q ss_pred HhhhhhcCChHHHHHHHHHHHHHHhhcCcC-ChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcc
Q 005686 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIA-GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (683)
Q Consensus 98 Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~-~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (683)
++.+|.+.+...-..++.+|..+.....+. ..+++.+.+..++.++++.+|..++..++.+.+........ -
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-------~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-------L 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-------h
Confidence 777787666666678888999998875443 37888999999999999999999999998887655432110 0
Q ss_pred hhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 005686 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (683)
Q Consensus 177 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (683)
.-..+++.+..++.+++..|...|.+++..++..- ..+...++ ..+..+..++..++..+|..+++++..++...++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 12578999999999999999999999999998753 22221111 22566666666667889999999999998888776
Q ss_pred hhhhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCC
Q 005686 256 LEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (683)
Q Consensus 256 ~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~ 334 (683)
+..... .+++.++..++++|.-++..+++.+..+++.+...+.+.. ..+++.+...+...+.|.
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~dp------------- 259 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEEDP------------- 259 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccCC-------------
Confidence 643332 4888888888888888899999999999986333222211 134555544444322110
Q ss_pred ccCCCCcccccccCCCCCCCCCCCccccccccHHHH-HHHHHHHHHhhcCcc---chhhhHHHHHHHHccCCCCChhhHH
Q 005686 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC-SAAALDVLSNVFGDE---ILPTLMPVIQAKLSASGDEAWKDRE 410 (683)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~-a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (683)
+. ..+.-. ....++.++..-+.. .+|.++..+.+.+.+.+ ...+.
T Consensus 260 -------------------------~~---~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d---~~~~~ 308 (503)
T PF10508_consen 260 -------------------------RL---SSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQD---PTIRE 308 (503)
T ss_pred -------------------------cc---cchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC---hhHHH
Confidence 00 011111 224556666653332 35677777777777777 89999
Q ss_pred HHHHHHHHHHhcchh-h-h----hhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHH--
Q 005686 411 AAVLALGAIAEGCIK-G-L----YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM-- 482 (683)
Q Consensus 411 aal~~l~~l~~~~~~-~-~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~-- 482 (683)
+|+.++|.++..... . + .+.+..++..+..........+|.+++.+++.+....... ............+.
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~-~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR-QDNDILSITESWYESL 387 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHh
Confidence 999999999876532 1 2 2345556677777777777889999999999996432210 00000011111111
Q ss_pred -------HHHHHhccCCccHHHHHHHHHHHHHHH
Q 005686 483 -------GLLKRILDTNKRVQEAACSAFATLEEE 509 (683)
Q Consensus 483 -------~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (683)
.++..++.+-+.+|.++...+..++..
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 455566666789999999999988754
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.42 E-value=6.3e-11 Score=133.68 Aligned_cols=273 Identities=17% Similarity=0.113 Sum_probs=193.8
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc
Q 005686 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 133 ~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (683)
++.|.+.+.++++.+|..++..|+.+.. ...++.|...+.|+++.||..|+.+|..+.+..+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP------------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc------------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC
Confidence 4677788889999999999999976421 3467788889999999999999999988765432
Q ss_pred hhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
. .+.+...++++++.+|..++..|..+-.... ..++..+.++++.+|..|+..|..+-..
T Consensus 685 ~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-----------~~l~~~L~D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 685 P---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-----------ALFAAALGDPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred c---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-----------HHHHHHhcCCCHHHHHHHHHHHhcccCc
Confidence 1 1234455567889999999988877532111 1234567899999999999887765211
Q ss_pred CCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 005686 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (683)
Q Consensus 293 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~ 372 (683)
. .+...+.+ .++.+|..+.
T Consensus 745 ----~-----------~l~~~l~D----------------------------------------------~~~~VR~~aa 763 (897)
T PRK13800 745 ----E-----------SVAGAATD----------------------------------------------ENREVRIAVA 763 (897)
T ss_pred ----H-----------HHHHHhcC----------------------------------------------CCHHHHHHHH
Confidence 1 11111111 1135899998
Q ss_pred HHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHH
Q 005686 373 AALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (683)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 452 (683)
..|..+...-+ ...+.+...+++++ +.+|.+++.+|+.+... ..+.+.+...+.|+++.||..
T Consensus 764 ~aL~~~~~~~~-----~~~~~L~~ll~D~d---~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~ 826 (897)
T PRK13800 764 KGLATLGAGGA-----PAGDAVRALTGDPD---PLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQG 826 (897)
T ss_pred HHHHHhccccc-----hhHHHHHHHhcCCC---HHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHH
Confidence 88887754322 23566778888888 99999999999887542 112355778899999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Q 005686 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (683)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~ 532 (683)
|+.+|+.+.. +..++.|...++|+++.||..|+.+|+.+ .. -+...+.|...+++.
T Consensus 827 Aa~aL~~l~~---------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~------~~---~~~a~~~L~~al~D~ 882 (897)
T PRK13800 827 AARALAGAAA---------------DVAVPALVEALTDPHLDVRKAAVLALTRW------PG---DPAARDALTTALTDS 882 (897)
T ss_pred HHHHHHhccc---------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc------CC---CHHHHHHHHHHHhCC
Confidence 9999987742 23347788888999999999999999985 01 123455556777777
Q ss_pred hHhHHHHHHHHHH
Q 005686 533 QRRNLRIVYDAIG 545 (683)
Q Consensus 533 ~~~~~~~~~~~l~ 545 (683)
+..++..+..+|.
T Consensus 883 d~~Vr~~A~~aL~ 895 (897)
T PRK13800 883 DADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 6677777777765
No 48
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.2e-08 Score=105.28 Aligned_cols=511 Identities=13% Similarity=0.122 Sum_probs=291.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHh--cCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccC--CHhHHHHHH
Q 005686 20 LLEQQISPSSTADKSQIWQQLQQYS--QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM--SPSNQQYIK 95 (683)
Q Consensus 20 ~l~~~~s~~~~~~r~~A~~~L~~~~--~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l--~~~~~~~i~ 95 (683)
++.-+.+.... +++|--+.|.-+. +.|+.|+.|+.=|.+.-+...-.-..+....-..+-++|+.. +++.-..||
T Consensus 93 Iv~lMl~s~~~-iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK 171 (960)
T KOG1992|consen 93 IVTLMLSSPFN-IQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIK 171 (960)
T ss_pred HHHHHhcCcHH-HHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 44445566666 8888888888775 479999988876664322222222223333334455666642 344444444
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhcc--CChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 005686 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (683)
Q Consensus 96 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (683)
-.| ..+.. ...+++....+.++. ++......-+..+.-+++-+...-..+.+.+
T Consensus 172 ~vL-d~f~~-----------------------Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEF 227 (960)
T KOG1992|consen 172 LVL-DRFAE-----------------------PLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEF 227 (960)
T ss_pred HHH-HhhHh-----------------------HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 322 11111 112233333333321 1211111111111122222221111223333
Q ss_pred CcchhHhhHHHHHHhhcCC---------C----HHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCC--CCH---
Q 005686 174 AECPINIFLPRLLQFFQSP---------H----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND--PSA--- 235 (683)
Q Consensus 174 ~~~~~~~i~~~l~~~l~~~---------~----~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~--- 235 (683)
|+..++..++.+.+.++-. + .++|...++.+..++...++.+.+.+++++...++++.+ +++
T Consensus 228 FEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD 307 (960)
T KOG1992|consen 228 FEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYD 307 (960)
T ss_pred HHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHH
Confidence 4456788888888887621 1 256778899999999888899999999999888887643 222
Q ss_pred HHHHHHHHHHHHHHhh--Cccchh--hhHHHHHHH-----------------------HHHhhcCCChHH-HHHHhhHHH
Q 005686 236 EVRKLVCAAFNLLIEV--RPSFLE--PHLRNLFEY-----------------------MLQVNKDTDDDV-ALEACEFWH 287 (683)
Q Consensus 236 ~~~~~~~~~l~~l~~~--~~~~~~--~~l~~l~~~-----------------------~~~~~~~~~~~v-r~~a~~~l~ 287 (683)
.....+++.|..+++. +...+. ..+..|.+. +-..++..|-+. |+.|++++.
T Consensus 308 ~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvr 387 (960)
T KOG1992|consen 308 YLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVR 387 (960)
T ss_pred HHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHH
Confidence 3445667777766653 222221 223333332 222233333333 567889999
Q ss_pred HhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccH
Q 005686 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (683)
Q Consensus 288 ~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~ 367 (683)
.+++. ....+.+.+..-+..++...+ .+++.+|..
T Consensus 388 gL~~~--fe~~vt~v~~~~v~~~l~~y~-------------------------------------------~nPS~nWk~ 422 (960)
T KOG1992|consen 388 GLCKN--FEGQVTGVFSSEVQRLLDQYS-------------------------------------------KNPSGNWKK 422 (960)
T ss_pred HHHHH--hcchhHHHHHHHHHHHHHHhc-------------------------------------------cCCCccccc
Confidence 99887 223333334433333332111 124556777
Q ss_pred HHHHHHHHHHHHhhcCc------------cchhhhHHHHHHHHccCC-CCChhhHHHHHHHHHHHHhcchhhhhhhHHHH
Q 005686 368 RKCSAAALDVLSNVFGD------------EILPTLMPVIQAKLSASG-DEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (683)
Q Consensus 368 r~~a~~~l~~l~~~~~~------------~~~~~l~~~l~~~l~~~~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l 434 (683)
...+..++..++..-+. .+...+...+...+.+++ ...+-.|.+++.-+..+=...+ .+++-.+
T Consensus 423 kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~---~~~lm~~ 499 (960)
T KOG1992|consen 423 KDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG---KEHLMAL 499 (960)
T ss_pred cchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC---hHHHHHH
Confidence 77777777777655311 122334444445555532 2225566666654322222211 3567788
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHHHHh----hhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ----DIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
+|.++..|+.+...|-..|+.++.++-..... -.+++...++...++..+++.+.-+...--....+|+.+++.-.
T Consensus 500 ~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~ 579 (960)
T KOG1992|consen 500 LPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL 579 (960)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC
Confidence 99999999999999999999999888654433 11234566778888888888877554444567788888888888
Q ss_pred cccchHHHHHHHHHHHHHHHHhh----HhH-HHHHHHHHHHHHHHhccccC--chhHHHhhhHHHHHHHhcCCCCCcch-
Q 005686 511 AEELAPRLEIILQHLMMAFGKYQ----RRN-LRIVYDAIGTLADAVGFELN--QPVYLDILMPPLIAKWQQLPNSDKDL- 582 (683)
Q Consensus 511 ~~~l~~~l~~i~~~L~~~l~~~~----~~~-~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~- 582 (683)
.+.+.|+.+.++..|...+.... ... -...++.++.++...+..-. -+.+-..++|.+...+.+ +-.+.
T Consensus 580 ~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e---DI~Efi 656 (960)
T KOG1992|consen 580 QSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE---DIQEFI 656 (960)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 88999999999999988887642 122 23789999998887654421 023666677766655553 11222
Q ss_pred hhHHhHHHHHHHHhcc----ccccchHH
Q 005686 583 FPLLECFTSIAQALGA----GFTQFAQP 606 (683)
Q Consensus 583 ~~~~~~l~~l~~~~g~----~f~~~~~~ 606 (683)
-..+..++.+....+. .|++.++.
T Consensus 657 PYvfQlla~lve~~~~~ip~~~~~l~~~ 684 (960)
T KOG1992|consen 657 PYVFQLLAVLVEHSSGTIPDSYSPLFPP 684 (960)
T ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 3566777777776555 44444443
No 49
>PRK09687 putative lyase; Provisional
Probab=99.36 E-value=3.2e-10 Score=108.82 Aligned_cols=252 Identities=17% Similarity=0.122 Sum_probs=172.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHH
Q 005686 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (683)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 261 (683)
.+.+...|.|++..||..++..|..+-. +..++.+..++.++++.+|..++.+|..+-..... ..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~ 89 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QD 89 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hH
Confidence 4567788899999999999999976642 12345555667788999999999999987543211 23
Q ss_pred HHHHHHHHh-hcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCC
Q 005686 262 NLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (683)
Q Consensus 262 ~l~~~~~~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~ 340 (683)
..++.+... .+++++.||..|+..++.++.....+ ...++..+...+.+
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~D------------------------ 139 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAFD------------------------ 139 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhhC------------------------
Confidence 344555444 57889999999999999986542111 11222222222111
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHH
Q 005686 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (683)
Q Consensus 341 ~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~ 420 (683)
.+|.+|..+..+|+.+ ++ +..++.+...+.+++ |.+|..|+.+||.+.
T Consensus 140 ----------------------~~~~VR~~a~~aLg~~----~~---~~ai~~L~~~L~d~~---~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 140 ----------------------KSTNVRFAVAFALSVI----ND---EAAIPLLINLLKDPN---GDVRNWAAFALNSNK 187 (280)
T ss_pred ----------------------CCHHHHHHHHHHHhcc----CC---HHHHHHHHHHhcCCC---HHHHHHHHHHHhcCC
Confidence 1356999988888543 22 356788888888888 999999999999883
Q ss_pred hcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHH
Q 005686 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (683)
Q Consensus 421 ~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~ 500 (683)
... +.+.+.+...+.|.++.||..|+++||++.. ...++.|++.+++++ ++..++
T Consensus 188 ~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------------~~av~~Li~~L~~~~--~~~~a~ 242 (280)
T PRK09687 188 YDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------------KRVLSVLIKELKKGT--VGDLII 242 (280)
T ss_pred CCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------------hhHHHHHHHHHcCCc--hHHHHH
Confidence 222 3467788888899999999999999998632 367788888888754 677888
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHH-HhhHhHHHHHHHHHH
Q 005686 501 SAFATLEEEAAEELAPRLEIILQHLMMAFG-KYQRRNLRIVYDAIG 545 (683)
Q Consensus 501 ~al~~l~~~~~~~l~~~l~~i~~~L~~~l~-~~~~~~~~~~~~~l~ 545 (683)
.||+.+-. +..++.|...++ ..+..+...+.+++.
T Consensus 243 ~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 243 EAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 88886522 134444555555 334455556666654
No 50
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4e-08 Score=104.59 Aligned_cols=474 Identities=16% Similarity=0.149 Sum_probs=273.7
Q ss_pred hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccc
Q 005686 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (683)
Q Consensus 89 ~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~ 167 (683)
+..+.+.+.|+..+++.+..||-.+|..++.+....++.--.+.+..+..++.-. +...-.+++.+|+.++..-- +-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl--Ll 414 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL--LL 414 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC--cc
Confidence 5667888899999999999999999999999999876444455666666655433 35778899999988876311 01
Q ss_pred cCCCCCCcchhHhhHHHHHHhhcC--------CCHHHHHHHHHHHHHHHh-ccchhhHHhHHHHHHHHH-hhhCCCCHHH
Q 005686 168 SDVPGLAECPINIFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLF-LLSNDPSAEV 237 (683)
Q Consensus 168 ~~~~~~~~~~~~~i~~~l~~~l~~--------~~~~vr~~a~~~l~~~~~-~~~~~~~~~~~~~l~~l~-~~~~~~~~~~ 237 (683)
...+..++|.+++++.- ....||.+|+..+..+.. +-|..+.+.+..+...|+ .++-|++-++
T Consensus 415 -------ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 415 -------PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred -------hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 23468899999888742 345899999999999885 445667777766666654 4567899999
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhh-ccc
Q 005686 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN-MIY 316 (683)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~-l~~ 316 (683)
|.+|..+|.+.+...+.. ||=-.|+... ..-.-..|. .++..++.. ...+..|...++..++.. ++
T Consensus 488 RRAAsAAlqE~VGR~~n~--p~Gi~Lis~~----dy~sV~~rs---Ncy~~l~~~---ia~~~~y~~~~f~~L~t~Kv~- 554 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNF--PHGISLISTI----DYFSVTNRS---NCYLDLCVS---IAEFSGYREPVFNHLLTKKVC- 554 (1133)
T ss_pred hHHHHHHHHHHhccCCCC--CCchhhhhhc----chhhhhhhh---hHHHHHhHH---HHhhhhHHHHHHHHHHhcccc-
Confidence 999999999998876544 2111122110 000001122 223333322 112233333444443321 11
Q ss_pred ChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccc--cHHHHHHHHHHHHHhhcCccchhhhHHHH
Q 005686 317 ADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW--NLRKCSAAALDVLSNVFGDEILPTLMPVI 394 (683)
Q Consensus 317 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~--~~r~~a~~~l~~l~~~~~~~~~~~l~~~l 394 (683)
+| .+|..++.+|..++...++......+|.+
T Consensus 555 -----------------------------------------------HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~l 587 (1133)
T KOG1943|consen 555 -----------------------------------------------HWDVKIRELAAYALHKLSLTEPKYLADYVLPPL 587 (1133)
T ss_pred -----------------------------------------------cccHHHHHHHHHHHHHHHHhhHHhhcccchhhh
Confidence 22 36888999999999888886665566555
Q ss_pred HHHHccCCCCChhhHHHHHHHHHHHHhcchhh--hhhhH-HHHHHH---HhhccCC----C--ChhHHHHHHHHHHHHHH
Q 005686 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKG--LYPHL-SEIVAF---LIPLLDD----K--FPLIRSISCWTLSRFSK 462 (683)
Q Consensus 395 ~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~--~~~~~-~~l~~~---l~~~l~d----~--~~~vr~~a~~~l~~l~~ 462 (683)
.....+.+ ...|+++..+.+.+..++..- +..++ ++-+.. ++..+.| . ....|.+.+..+.+++-
T Consensus 588 ld~~ls~~---~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~ 664 (1133)
T KOG1943|consen 588 LDSTLSKD---ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSL 664 (1133)
T ss_pred hhhhcCCC---hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhh
Confidence 55555666 899999999999888766321 11111 111111 1222211 1 13455555555555443
Q ss_pred HHHhhhCCCcchhh-HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH-hHHHHH
Q 005686 463 FIVQDIGHQNGREQ-FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-RNLRIV 540 (683)
Q Consensus 463 ~~~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~-~~~~~~ 540 (683)
.-... ...+ .+..-..+.+.+.+++ .+|..|.++++.++...-..=.....+++...++.+.+..+ ..+...
T Consensus 665 s~~~~-----~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~ 738 (1133)
T KOG1943|consen 665 SKDRL-----FQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGL 738 (1133)
T ss_pred ccchh-----HHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHH
Confidence 21110 1111 1222223333343444 78999999999998765211001111455555555655533 333344
Q ss_pred HHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCC-Ccc-hhhHHhHHHHHHHHhcc-ccccchHHHHHHHHHHHHH
Q 005686 541 YDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNS-DKD-LFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQT 617 (683)
Q Consensus 541 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~-~~~~~~~l~~l~~~~g~-~f~~~~~~~~~~l~~~l~~ 617 (683)
.-+++.+-... . +-++-+.+...+ +.....+ +.+ ....+..+..++..++. .|..-..+++..+++.+++
T Consensus 739 ~lal~~lp~~~---i-~~~~q~~lc~~~---l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 739 ILALGVLPSEL---I-HRHLQEKLCKLV---LELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDD 811 (1133)
T ss_pred HHHHccCcHHh---h-chHHHHHHHHHH---hccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 44444332211 1 112333332222 2222212 222 23567777788888773 6777888899999999988
Q ss_pred HHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhcc
Q 005686 618 QQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGS 653 (683)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 653 (683)
-......+ ...-+|+.|+.++..+..-+..
T Consensus 812 Yttd~rGD------VGswVReaAm~al~~~~~~l~~ 841 (1133)
T KOG1943|consen 812 YTTDSRGD------VGSWVREAAMKALSSLLDTLSS 841 (1133)
T ss_pred cccccCcc------HHHHHHHHHHHHHHhhhhhhcC
Confidence 65321110 1123688888887777665553
No 51
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.30 E-value=3.3e-11 Score=110.95 Aligned_cols=350 Identities=15% Similarity=0.158 Sum_probs=218.9
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHh-hchhccccCCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhc
Q 005686 133 LQALVTCLDSNDINHMEGAMDALSKICE-DIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 133 ~~~l~~~l~s~~~~~r~~al~~l~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~ 210 (683)
+|.+.+-+.|.+......|..-++.+.. .....+.+ -.-..++|.+++++.+ ...-.+-.|..++..+.+.
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~-------VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQP-------VIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchh-------HHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccC
Confidence 4677777777777776666666655543 22222221 1235788999999954 4445667888888888765
Q ss_pred cchhhHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhh------HHHHHHHHHHhhcCCChHHHHHHh
Q 005686 211 MPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH------LRNLFEYMLQVNKDTDDDVALEAC 283 (683)
Q Consensus 211 ~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~------l~~l~~~~~~~~~~~~~~vr~~a~ 283 (683)
......-.+ ...+|.+++++.+++.+||..++.+|..++...+. ...| ++.++.++... ..+-++...+-
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss--~~~ismlRn~T 222 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSS--AIHISMLRNAT 222 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhc--cchHHHHHHhH
Confidence 322111111 13477888888889999999999999988765432 2222 23344433211 12334556666
Q ss_pred hHHHHhhccC---CchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcc
Q 005686 284 EFWHSYFEAQ---LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (683)
Q Consensus 284 ~~l~~l~~~~---~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~ 360 (683)
-.|+++|+.. ..+. .+.+.+|.|.+.+-..+.+
T Consensus 223 WtLSNlcRGknP~P~w~----~isqalpiL~KLiys~D~e---------------------------------------- 258 (526)
T COG5064 223 WTLSNLCRGKNPPPDWS----NISQALPILAKLIYSRDPE---------------------------------------- 258 (526)
T ss_pred HHHHHhhCCCCCCCchH----HHHHHHHHHHHHHhhcCHH----------------------------------------
Confidence 7788999872 2233 3445556655443321111
Q ss_pred ccccccHHHHHHHHHHHHHhhcCc---cch-hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHH
Q 005686 361 IVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIV 435 (683)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~ 435 (683)
+-..|..+++.++..-.+ .++ ..+.+.+.+.+.+++ ..+..-++..+|.+..+......-.+ -..+
T Consensus 259 ------vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s---a~iqtPalR~vGNIVTG~D~QTqviI~~G~L 329 (526)
T COG5064 259 ------VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES---AKIQTPALRSVGNIVTGSDDQTQVIINCGAL 329 (526)
T ss_pred ------HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc---ccccCHHHHhhcCeeecCccceehheecccH
Confidence 223356666666554432 112 235667888998887 88888999999998887643322111 1245
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh--cc
Q 005686 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AE 512 (683)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~ 512 (683)
+.+...|.++...+|+.|||+++.+...-... .+..+ ..++|.|+..|...+..++..||||+.+....+ ..
T Consensus 330 ~a~~~lLs~~ke~irKEaCWTiSNITAGnteq-----iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 330 KAFRSLLSSPKENIRKEACWTISNITAGNTEQ-----IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred HHHHHHhcChhhhhhhhhheeecccccCCHHH-----HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 66666788888899999999999997533221 11112 347788888888778889999999999987665 23
Q ss_pred cchHHHH--HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005686 513 ELAPRLE--IILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (683)
Q Consensus 513 ~l~~~l~--~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (683)
++..|+- .+++.|..++.-.+.+....+++++..+...
T Consensus 405 D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 405 DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 4455543 4667777777766556666677777777654
No 52
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.2e-05 Score=87.37 Aligned_cols=228 Identities=12% Similarity=0.116 Sum_probs=158.5
Q ss_pred hhhHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGC--IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 483 (683)
..++.-+...|..++... .....+++..++..+...+++.....|...+.++..+.+..+. .+..++...++.
T Consensus 668 ~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~-----e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA-----EHCDLIPKLIPE 742 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHH
Confidence 778888888998888772 2234678888999999999999999999999999999987763 356778888888
Q ss_pred HHHHhccCCccHHHHHHHHHHHHH--HHh---c-----ccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcc
Q 005686 484 LLKRILDTNKRVQEAACSAFATLE--EEA---A-----EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~--~~~---~-----~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (683)
++-.+++.+..-|..|..+|..++ ... + ..+.+|+..|...+++ .........+-+++.+....+.
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~g----d~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVG----DSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcc----cHHHHHHHHHHHHHHHHHHHhc
Confidence 887778878888889988888887 332 1 1234455544443222 1111111225566666666554
Q ss_pred ccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhCCcccCCC
Q 005686 554 ELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQ 631 (683)
Q Consensus 554 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~-~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 631 (683)
.... .++..++..+...+.. +.+++ ..+++.+..++..+.. -.+++.+.++|.++..+.+.
T Consensus 819 ~ld~-~~l~~li~~V~~~L~s---~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~------------- 881 (1176)
T KOG1248|consen 819 ILDD-ETLEKLISMVCLYLAS---NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH------------- 881 (1176)
T ss_pred cccH-HHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-------------
Confidence 4433 5777777766554543 34555 4688888888888876 67799999999999865542
Q ss_pred CCchHHHHHHHHHHHHHHHhccc-hHHhHH
Q 005686 632 YDKEFVVCCLDLLSGLAEGLGSG-IESLVI 660 (683)
Q Consensus 632 ~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~ 660 (683)
...+|...-.++..++..+|-+ +.+|+|
T Consensus 882 -k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 882 -KIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred -hHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 2347777888888888888854 445544
No 53
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.22 E-value=6.6e-08 Score=101.76 Aligned_cols=376 Identities=14% Similarity=0.101 Sum_probs=234.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHhc-------CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHH
Q 005686 24 QISPSSTADKSQIWQQLQQYSQ-------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (683)
Q Consensus 24 ~~s~~~~~~r~~A~~~L~~~~~-------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 96 (683)
+.+.+.+ ....+.+.|..+-+ .|++.+.+...|. +.++.+|..++..+++.+...-.....-....+..
T Consensus 47 L~~~~~e-~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~---h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 47 LNTSNRE-QVELICDILKRLLSALSPDSLLPQYQPFLQRGLT---HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HhhcChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 3344555 66777777777432 2445566666665 67899999999998887744311111112245667
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHH-----HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 005686 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL-----LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (683)
Q Consensus 97 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l-----~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (683)
.++.++.+++..|...++.++..+++.. .....+ ...|.+.+..++..+|...+.++..++....+.+..-
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~-- 198 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV-- 198 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH--
Confidence 7888999999999999999999999853 233333 7778888877677889999999988887666543210
Q ss_pred CCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH--HHHHHHHhhhC----CC-CHH-HHHHHHH
Q 005686 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSN----DP-SAE-VRKLVCA 243 (683)
Q Consensus 172 ~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~----~~-~~~-~~~~~~~ 243 (683)
.-..+++.++..+.+.|.-++..++.++..++.. +.. ..++. .+++.+.+.+. |+ -.. .....+.
T Consensus 199 -----~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 199 -----VNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred -----HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence 1135899999999999999999999999999873 322 22222 34555555543 33 111 1223445
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhH----HhhhhhhHHHHHhhcccChh
Q 005686 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL----KEFLPRLVPVLLSNMIYADD 319 (683)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~l~~l~~~l~~~l~~~~~ 319 (683)
.+..+....+..+....+.++..+.....+.|...+..|++.|+.++........+ .+.+..++..+.........
T Consensus 272 f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 272 FFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 66666665666665666778888888888889999999999999998763333323 12222222222222211111
Q ss_pred hhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc----cchh-------
Q 005686 320 DESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILP------- 388 (683)
Q Consensus 320 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~------- 388 (683)
.+|..+..++..+...-++ ++..
T Consensus 352 ----------------------------------------------~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~ 385 (503)
T PF10508_consen 352 ----------------------------------------------ELKLRALHALASILTSGTDRQDNDILSITESWYE 385 (503)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 1344444555444322211 1100
Q ss_pred -----hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 389 -----TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 389 -----~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
.....+...++.|= +..|.|++..+..++...- -..--..+.++.+++..-.+.+...+.+=..++..+.+
T Consensus 386 ~~~~~~~~~~l~~~~~qPF---~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 386 SLSGSPLSNLLMSLLKQPF---PELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HhcCCchHHHHHHHhcCCc---hHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 11115556666664 7899999999999988641 11111224467777777777777776665555555554
Q ss_pred H
Q 005686 463 F 463 (683)
Q Consensus 463 ~ 463 (683)
.
T Consensus 463 ~ 463 (503)
T PF10508_consen 463 S 463 (503)
T ss_pred c
Confidence 3
No 54
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.21 E-value=3.6e-09 Score=97.75 Aligned_cols=351 Identities=14% Similarity=0.117 Sum_probs=227.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHh-hccCCHhHHHHHHHHHhhhhhc-CChHHHHHHHHHHHHHHhhcCcCC----hHHHHHH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAG----WLELLQA 135 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~-w~~l~~~~~~~i~~~Ll~~l~~-~~~~vr~~~~~~l~~i~~~~~~~~----~~~l~~~ 135 (683)
+.+-+..+.|..-+|+.+.+. -+-+++-....+...+.+.+.+ ......-.++-++..|+....... =.+-.|.
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 346667777777788877653 2336666667777778887743 455667788999999987542211 1234677
Q ss_pred HHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCH--HHHHHHHHHHHHHHhc-cc
Q 005686 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT--SLRKLSLGSVNQFIML-MP 212 (683)
Q Consensus 136 l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~vr~~a~~~l~~~~~~-~~ 212 (683)
+.+++.+++..+|+.++.+|+.++.+.... ++++ .-...+..++..+.+... .+-..+...|..++.. .|
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~v------L~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYV------LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhH-HHHH------HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 888888999999999999999987654432 1111 124566677777776544 6667788888888853 45
Q ss_pred hhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhc
Q 005686 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (683)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 291 (683)
+.-...+...++.|.+++...++++...+|.++..+.+...+.+...+. .+.+-+++.+.+++..+..-|+...+++..
T Consensus 235 ~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 5555667788999999998889999999999999888776554433222 111223333333333332223322222221
Q ss_pred cCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 005686 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (683)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a 371 (683)
. . | +.. .+ .
T Consensus 315 G-------------------------~--------------------------------------D-~QT----qv---i 323 (526)
T COG5064 315 G-------------------------S--------------------------------------D-DQT----QV---I 323 (526)
T ss_pred c-------------------------C--------------------------------------c-cce----eh---h
Confidence 1 0 0 000 00 0
Q ss_pred HHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChhHH
Q 005686 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIR 450 (683)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~vr 450 (683)
-.+ -.++.+...++++. -..|..+|+.++.+..+..+.+...++ .++|.+++.|...+-.+|
T Consensus 324 --------I~~------G~L~a~~~lLs~~k---e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~k 386 (526)
T COG5064 324 --------INC------GALKAFRSLLSSPK---ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIK 386 (526)
T ss_pred --------eec------ccHHHHHHHhcChh---hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 001 24556666788887 789999999999999887766654444 388999999998889999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCcchhhH--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 451 SISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
+.|||+++......-.. .+.-.|+ +.++..|-..|.-.+.++-+.++.++..+++..
T Consensus 387 KEACWAisNatsgg~~~---PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 387 KEACWAISNATSGGLNR---PDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG 445 (526)
T ss_pred HHHHHHHHhhhccccCC---chHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhh
Confidence 99999999987654321 1223333 345667767766545556777788888887654
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=5.5e-07 Score=92.76 Aligned_cols=392 Identities=16% Similarity=0.116 Sum_probs=218.4
Q ss_pred Hhhhhhc-CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcc
Q 005686 98 LLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (683)
Q Consensus 98 Ll~~l~~-~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (683)
|.++|.+ .+...+.+.-++++.|++.. ....++|.+.+...+.|..+|.....-|-+.++.-++..-
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~---dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--------- 107 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGK---DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--------- 107 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee---------
Confidence 4446654 45666777788888888754 4788999999999999999988876666555554443210
Q ss_pred hhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHH-HHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 005686 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ-YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (683)
Q Consensus 177 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (683)
--+..+.+.|.|+++.+|..|++++.++-- +.+.. ++-.+-+...|+.+.||+.|..++.++-...++.
T Consensus 108 ---LSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~ 177 (968)
T KOG1060|consen 108 ---LSINTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ 177 (968)
T ss_pred ---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence 114457889999999999999999987631 11222 2455566778999999999999998887766543
Q ss_pred hhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhc-ccCC--C
Q 005686 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE-EDES--L 332 (683)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~-~~e~--~ 332 (683)
- ..+++.+-..+.|.++-|.-.|.-++..+|-. ..+.+.++..++-..+ . |.+.|.-- -... .
T Consensus 178 k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLIHknyrklC~ll----~----dvdeWgQvvlI~mL~R 243 (968)
T KOG1060|consen 178 K----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLIHKNYRKLCRLL----P----DVDEWGQVVLINMLTR 243 (968)
T ss_pred H----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHhhHHHHHHHhhc----c----chhhhhHHHHHHHHHH
Confidence 2 25666666678888888888887777777644 2333444443322221 1 11111000 0000 0
Q ss_pred CCccCCCCcccccccCCCCCCCCCCCcccccccc-HHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHH
Q 005686 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN-LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREA 411 (683)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~-~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~a 411 (683)
.++.+..+|........+.. .+......++ +|.- ...+.=+..+++-...++.+.+ +.+..|
T Consensus 244 YAR~~l~~P~~~~~~~e~n~----~~~~~~~~~~~~~~P----------~~~d~D~~lLL~stkpLl~S~n---~sVVmA 306 (968)
T KOG1060|consen 244 YARHQLPDPTVVDSSLEDNG----RSCNLKDKYNEIRTP----------YVNDPDLKLLLQSTKPLLQSRN---PSVVMA 306 (968)
T ss_pred HHHhcCCCccccccccccCc----ccccccccccccCCC----------cccCccHHHHHHhccHHHhcCC---cHHHHH
Confidence 00001111111000000000 0000000000 0000 0001112234444555555555 666666
Q ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhh---------CCC-----------
Q 005686 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI---------GHQ----------- 471 (683)
Q Consensus 412 al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---------~~~----------- 471 (683)
++.++..++... ....+...++..|. +++.+++..+..+..++..-+... .+.
T Consensus 307 ~aql~y~lAP~~------~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKle 379 (968)
T KOG1060|consen 307 VAQLFYHLAPKN------QVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLE 379 (968)
T ss_pred HHhHHHhhCCHH------HHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHH
Confidence 666666555421 12223444444443 344555555555555554322110 000
Q ss_pred -----cchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 005686 472 -----NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (683)
Q Consensus 472 -----~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~ 546 (683)
.....+..+++.+...+++.+..+...+..||+..+ ..+...-+.++..|+..+.+.+..++..+.-.|..
T Consensus 380 iLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA----~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~ 455 (968)
T KOG1060|consen 380 ILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCA----SRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKR 455 (968)
T ss_pred HHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH----HhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 023345666777777777666667777788877544 33445667788888888888777777777777877
Q ss_pred HHHHhcc
Q 005686 547 LADAVGF 553 (683)
Q Consensus 547 l~~~~~~ 553 (683)
++..-+.
T Consensus 456 Llq~~p~ 462 (968)
T KOG1060|consen 456 LLQKDPA 462 (968)
T ss_pred HHhhChH
Confidence 7776443
No 56
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.1e-07 Score=94.87 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=136.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~ 141 (683)
+..+.+|.-|..++-+..-++ ++..+..+ ..|.+-|.++++.|.+++..++..+++..+. .+-.+-|.+...+.
T Consensus 155 sskpYvRKkAIl~lykvFLkY----PeAlr~~F-prL~EkLeDpDp~V~SAAV~VICELArKnPk-nyL~LAP~ffkllt 228 (877)
T KOG1059|consen 155 SSKPYVRKKAILLLYKVFLKY----PEALRPCF-PRLVEKLEDPDPSVVSAAVSVICELARKNPQ-NYLQLAPLFYKLLV 228 (877)
T ss_pred cCchHHHHHHHHHHHHHHHhh----hHhHhhhH-HHHHHhccCCCchHHHHHHHHHHHHHhhCCc-ccccccHHHHHHHh
Confidence 678899998887776555443 22233322 3455667789999999999999999998754 44456666666664
Q ss_pred -cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc-----cchhh
Q 005686 142 -SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-----MPSAL 215 (683)
Q Consensus 142 -s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~-----~~~~~ 215 (683)
+.|.-+....+..++.+.-.-+ +....+++.+.+.+.++... .....|+..++.. .|. -
T Consensus 229 tSsNNWmLIKiiKLF~aLtplEP------------RLgKKLieplt~li~sT~Am--SLlYECvNTVVa~s~s~g~~d-~ 293 (877)
T KOG1059|consen 229 TSSNNWVLIKLLKLFAALTPLEP------------RLGKKLIEPITELMESTVAM--SLLYECVNTVVAVSMSSGMSD-H 293 (877)
T ss_pred ccCCCeehHHHHHHHhhccccCc------------hhhhhhhhHHHHHHHhhHHH--HHHHHHHHHheeehhccCCCC-c
Confidence 3333343444455544433211 34577888888888776431 1222333333322 211 1
Q ss_pred HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
...+.-.++.|-.++.|.|++.+-..+-++..+...+|..+..|-+ ++++++.|.|+++|..|++.+..+...
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 2223344666667778889999999999999999999987766554 455688999999999999999998765
No 57
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.6e-07 Score=95.04 Aligned_cols=345 Identities=13% Similarity=0.104 Sum_probs=201.0
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHh
Q 005686 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (683)
Q Consensus 101 ~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (683)
+..++++.||+.+|++|-.+...+ +.+..++...+..++.+.++.+.-+|+.++..+|-.--+- +..
T Consensus 151 ~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldL------------IHk 217 (968)
T KOG1060|consen 151 AVTDPSPYVRKTAAHAIPKLYSLD-PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDL------------IHK 217 (968)
T ss_pred HhcCCcHHHHHHHHHhhHHHhcCC-hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHH------------hhH
Confidence 455778888888888888887765 3444578888888888888888888888877766533322 233
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhc-cchh----------------------------hHHhHHHHHHHHHhhhC
Q 005686 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPSA----------------------------LFVSMDQYLQGLFLLSN 231 (683)
Q Consensus 181 i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~-~~~~----------------------------~~~~~~~~l~~l~~~~~ 231 (683)
-...+.+.+.|-+.-=+.-.++.|..++.. +++. ..+.+..+++..-.++.
T Consensus 218 nyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 218 NYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 444566666665544445555556555532 1110 11223344555445555
Q ss_pred CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHH
Q 005686 232 DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLL 311 (683)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~ 311 (683)
+.++.+..++++++..++-.. ....|.+.++..+... .+++...+..+..++.. .+..+.||+...+-.
T Consensus 298 S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~--~~~lF~P~lKsFfv~-- 366 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIK--RPTLFEPHLKSFFVR-- 366 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhc--chhhhhhhhhceEee--
Confidence 666666666666666555432 2233444444444432 23555566666666554 455566665442110
Q ss_pred hhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhH
Q 005686 312 SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLM 391 (683)
Q Consensus 312 ~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~ 391 (683)
.++ .......=|..++....+.-+..++
T Consensus 367 ----ssD------------------------------------------------p~~vk~lKleiLs~La~esni~~IL 394 (968)
T KOG1060|consen 367 ----SSD------------------------------------------------PTQVKILKLEILSNLANESNISEIL 394 (968)
T ss_pred ----cCC------------------------------------------------HHHHHHHHHHHHHHHhhhccHHHHH
Confidence 000 1112222344455555555566888
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCC
Q 005686 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQ 471 (683)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 471 (683)
+-++.++.+.+ -....+++.++|..+.... ..-+..+..++..+.+.+..|-..++.+|.++...-+
T Consensus 395 rE~q~YI~s~d---~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p------ 461 (968)
T KOG1060|consen 395 RELQTYIKSSD---RSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP------ 461 (968)
T ss_pred HHHHHHHhcCc---hhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh------
Confidence 88899998887 5666677778877766433 3345577888888887788888888888888876433
Q ss_pred cchhhHHHHHHHHHHHhccC-CccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHH
Q 005686 472 NGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVY 541 (683)
Q Consensus 472 ~~~~~~~~~l~~l~~~l~d~-~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~ 541 (683)
.....++..|.+.++.- -+.-|...+|.++..|+.. -...+.++..+.+-+.+..+.+...++
T Consensus 462 ---~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~v----pri~PDVLR~laksFs~E~~evKlQIL 525 (968)
T KOG1060|consen 462 ---AEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIV----PRIAPDVLRKLAKSFSDEGDEVKLQIL 525 (968)
T ss_pred ---HHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhc----chhchHHHHHHHHhhccccchhhHHHH
Confidence 22233445555555321 2556777778888777652 234456666666655555444444443
No 58
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.15 E-value=5.3e-09 Score=111.88 Aligned_cols=296 Identities=16% Similarity=0.204 Sum_probs=201.1
Q ss_pred HHHHHHHHhcc-CChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 005686 132 LLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 132 l~~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (683)
+++.+..++++ .....|..|++.|..+......+ ..++.++|.++-++.|+...||..|+.++..++..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----------~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----------VKLDRVLPYFVHLLMDSEADVRATALETLTELLAL 492 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----------HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 45666667765 34567889999998888876653 34789999999999999999999999999888744
Q ss_pred ---cchhhHHhHH-HHHHHHHhhhCC-CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhH
Q 005686 211 ---MPSALFVSMD-QYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (683)
Q Consensus 211 ---~~~~~~~~~~-~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~ 285 (683)
+|..-...++ -++|.|-.++.| ....+|.....+|..++...+.++.- -..+-.. ...++.+.+
T Consensus 493 Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~-~q~~~~~--g~~n~~nse-------- 561 (1431)
T KOG1240|consen 493 VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL-TQELRQA--GMLNDPNSE-------- 561 (1431)
T ss_pred ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH-HHHHHhc--ccccCcccc--------
Confidence 3332222232 246888888777 55678888889999988876654421 0000000 011222221
Q ss_pred HHHhhcc--CCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccc
Q 005686 286 WHSYFEA--QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (683)
Q Consensus 286 l~~l~~~--~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~ 363 (683)
+..+. ......+...+++.+..+ +.+++
T Consensus 562 --t~~~~~~~~~~~~L~~~V~~~v~sL---lsd~~--------------------------------------------- 591 (1431)
T KOG1240|consen 562 --TAPEQNYNTELQALHHTVEQMVSSL---LSDSP--------------------------------------------- 591 (1431)
T ss_pred --cccccccchHHHHHHHHHHHHHHHH---HcCCc---------------------------------------------
Confidence 11111 001111222222222222 12110
Q ss_pred cccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHhhc
Q 005686 364 VWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPL 441 (683)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~-~~~~~~~l~~~l~~~ 441 (683)
..+|++..+.+..|+..+|. ..-+.+++++..+|++.+ |..|-|-...+..++-..+.. .. +.++|.+.+.
T Consensus 592 -~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD---w~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~ 664 (1431)
T KOG1240|consen 592 -PIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD---WRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQG 664 (1431)
T ss_pred -hHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc---HHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHh
Confidence 14788888889999999987 555678999999999998 999999777776555544322 22 3369999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc
Q 005686 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (683)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (683)
|.|..+.|-..|+.+++.+++.-- ..+.++.+++......|-.+|.-||.+++..|..+.+..+
T Consensus 665 ltD~EE~Viv~aL~~ls~Lik~~l------l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 665 LTDGEEAVIVSALGSLSILIKLGL------LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred ccCcchhhHHHHHHHHHHHHHhcc------cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999987532 3467777778888888888899999999999999988764
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.13 E-value=7.1e-10 Score=86.42 Aligned_cols=93 Identities=25% Similarity=0.297 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHH
Q 005686 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (683)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 487 (683)
.|.+++.+++.++.++++.+.+|++.+++.++.++.|++++||+.||.++..+++...+. .-+++..++..|.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----ILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 589999999999999988899999999999999999999999999999999999998764 567999999999999
Q ss_pred hccCCccHHHHHHHHHHHH
Q 005686 488 ILDTNKRVQEAACSAFATL 506 (683)
Q Consensus 488 l~d~~~~v~~~a~~al~~l 506 (683)
+.|+++.||..| ..|..+
T Consensus 77 ~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HcCCchhHHHHH-HHHHHH
Confidence 999999999877 444433
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.6e-06 Score=87.14 Aligned_cols=254 Identities=13% Similarity=0.138 Sum_probs=166.2
Q ss_pred hHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh
Q 005686 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 178 ~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
..++-+-++..++++.+.+|+.|+..+..++...|+.+.+. ++.|..-+.|+|+.|..+|+.++++++...|+..-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~----FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPC----FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhh----HHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 45677788999999999999999999999887767766655 45566667899999999999999999999998765
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccC
Q 005686 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (683)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~ 337 (683)
+.-+.++.++... +.++ +-...+..++++.-. .++..+. +++.+...+..+.
T Consensus 218 ~LAP~ffkllttS--sNNW-mLIKiiKLF~aLtpl--EPRLgKK----Lieplt~li~sT~------------------- 269 (877)
T KOG1059|consen 218 QLAPLFYKLLVTS--SNNW-VLIKLLKLFAALTPL--EPRLGKK----LIEPITELMESTV------------------- 269 (877)
T ss_pred cccHHHHHHHhcc--CCCe-ehHHHHHHHhhcccc--Cchhhhh----hhhHHHHHHHhhH-------------------
Confidence 5555555543221 2233 445556666666443 2332222 2222222221100
Q ss_pred CCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh-----cCc--cchhhhHHHHHHHHccCCCCChhhHH
Q 005686 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-----FGD--EILPTLMPVIQAKLSASGDEAWKDRE 410 (683)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~-----~~~--~~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (683)
-.....+|+..+... .++ .....+++-+..++.+.+ ...|+
T Consensus 270 -----------------------------AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsD---qNLKY 317 (877)
T KOG1059|consen 270 -----------------------------AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSD---QNLKY 317 (877)
T ss_pred -----------------------------HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCC---ccHHH
Confidence 011122333333322 112 234456677777888888 89999
Q ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhcc
Q 005686 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (683)
Q Consensus 411 aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d 490 (683)
-++.+++.++...+..+..+- ..++++|.|.++.+|..|+..+-.+.. +..+..++..|+..+..
T Consensus 318 lgLlam~KI~ktHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs-----------kkNl~eIVk~LM~~~~~ 382 (877)
T KOG1059|consen 318 LGLLAMSKILKTHPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS-----------KKNLMEIVKTLMKHVEK 382 (877)
T ss_pred HHHHHHHHHhhhCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHh
Confidence 999999999987765554443 578889999999999999988766643 45566667777666654
Q ss_pred CCc-cHHHHHHHHHHHHHHHh
Q 005686 491 TNK-RVQEAACSAFATLEEEA 510 (683)
Q Consensus 491 ~~~-~v~~~a~~al~~l~~~~ 510 (683)
.+. ..|...+.-+..+|...
T Consensus 383 ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 383 AEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred ccchhHHHHHHHHHHHHhhhh
Confidence 443 56666666655555543
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=1.3e-06 Score=94.52 Aligned_cols=246 Identities=15% Similarity=0.187 Sum_probs=183.1
Q ss_pred CCCHHHHHHHHHHHHHHHhh--CccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHH
Q 005686 232 DPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (683)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~ 309 (683)
..+..+++.+++.|..++.. .......++..|.+.+...+++.....+...+.+|..+.+.. ......++.++++.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~--~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLL--SAEHCDLIPKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 44678999999999999887 224556778888888888888888778888888888887762 23344566677766
Q ss_pred HHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH--hhc---Cc
Q 005686 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS--NVF---GD 384 (683)
Q Consensus 310 l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~--~~~---~~ 384 (683)
++-.+...+. ..|+.+.+||-.|+ ..+ |+
T Consensus 743 vIL~~Ke~n~----------------------------------------------~aR~~Af~lL~~i~~i~~~~d~g~ 776 (1176)
T KOG1248|consen 743 VILSLKEVNV----------------------------------------------KARRNAFALLVFIGAIQSSLDDGN 776 (1176)
T ss_pred HHHhcccccH----------------------------------------------HHHhhHHHHHHHHHHHHhhhcccc
Confidence 6544421110 25777888888877 332 32
Q ss_pred ----cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhh-hhhHHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 005686 385 ----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (683)
Q Consensus 385 ----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (683)
..+..++..+...+.... ...+...+.+++.+.......+ .+++++++..+...|...++.++.+|+..+..
T Consensus 777 e~~~~~lnefl~~Isagl~gd~---~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikv 853 (1176)
T KOG1248|consen 777 EPASAILNEFLSIISAGLVGDS---TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKV 853 (1176)
T ss_pred cchHHHHHHHHHHHHhhhcccH---HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 356667777777665444 4555555777777766554444 46788899999999999999999999999999
Q ss_pred HHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHh
Q 005686 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKY 532 (683)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~l~~~l~~i~~~L~~~l~~~ 532 (683)
++..++.. ...++++.+++.++...+|....+|...-..|..+++.++ +.+.+|++.-...++..+.+.
T Consensus 854 lv~~~pe~----~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 854 LVYKFPEE----CLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKR 923 (1176)
T ss_pred HHHcCCHH----HHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHH
Confidence 99988765 5788999999999999999888999999999999999986 678888887666666656554
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.5e-06 Score=89.99 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=128.2
Q ss_pred CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc
Q 005686 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (683)
Q Consensus 86 l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~ 165 (683)
.++|....+-..+-+.+...++.||+.++.|...+.++. |+...-+++...+.+.+.+..+..+++..+..+|+..++.
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 467777777777777888889999999999999998875 3344556666777777888888888998888888876654
Q ss_pred cccCCCCCCcchhHhhHHHHHHhhcC---------------CCHHHHHHHHHHHHHHHhccchhhHHhHHHHH-------
Q 005686 166 LDSDVPGLAECPINIFLPRLLQFFQS---------------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYL------- 223 (683)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~l~~~l~~---------------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l------- 223 (683)
+. +...+++.++..|++ ++|-++...++.|.-+....++ ..+.|..++
T Consensus 214 l~---------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d-aSd~M~DiLaqvatnt 283 (866)
T KOG1062|consen 214 LS---------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD-ASDLMNDILAQVATNT 283 (866)
T ss_pred HH---------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHhcc
Confidence 32 233344444444432 3677788888877777655332 112222222
Q ss_pred ------------HHHHhhhC-CCCHHHHHHHHHHHHHHHhhCccchh---------------hhHHHHHHHHHHhhcCCC
Q 005686 224 ------------QGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLE---------------PHLRNLFEYMLQVNKDTD 275 (683)
Q Consensus 224 ------------~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~---------------~~l~~l~~~~~~~~~~~~ 275 (683)
+.+...+. .++...|..++.+|.++.......++ .-.+.--..++.|++|+|
T Consensus 284 dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 284 DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD 363 (866)
T ss_pred cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc
Confidence 22222211 35567888888888887765433221 011222235667899999
Q ss_pred hHHHHHHhhHHHHhhcc
Q 005686 276 DDVALEACEFWHSYFEA 292 (683)
Q Consensus 276 ~~vr~~a~~~l~~l~~~ 292 (683)
..+|.+|+|....+...
T Consensus 364 ~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNE 380 (866)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999888765
No 63
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.99 E-value=2.5e-09 Score=81.32 Aligned_cols=67 Identities=36% Similarity=0.526 Sum_probs=62.0
Q ss_pred HHHHHHHHhcC-CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc--------cCCHhHHHHHHHHHhhhhh
Q 005686 36 IWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--------SMSPSNQQYIKSELLPCLG 103 (683)
Q Consensus 36 A~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~--------~l~~~~~~~i~~~Ll~~l~ 103 (683)
|+++|.++++. |+|+..|++++.+ .+.++.+|++|+++||+.|.++|. .++++.|..||+.|++++.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~-~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSS-NSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999988 9999999999974 367999999999999999999999 8999999999999999874
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.99 E-value=1.7e-05 Score=87.98 Aligned_cols=430 Identities=15% Similarity=0.121 Sum_probs=228.6
Q ss_pred CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHH
Q 005686 125 GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (683)
Q Consensus 125 ~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l 204 (683)
....+..++..++..+..+...+|-.|+.|+..+++.-+..+. .+.+-..+-.-+.|++..||.+|+..+
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~----------~~dvq~~Vh~R~~DssasVREAaldLv 879 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS----------RPDVQEAVHGRLNDSSASVREAALDLV 879 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc----------CHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 3466777888888888888889999999999999987665443 244555666778899999999999999
Q ss_pred HHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhh
Q 005686 205 NQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (683)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~ 284 (683)
+.++-..|+... ++...+.+...|....||+.+++.+..++...|.+- .+..++--++....|.+..+...+.+
T Consensus 880 Grfvl~~~e~~~----qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~--~i~~~cakmlrRv~DEEg~I~kLv~e 953 (1692)
T KOG1020|consen 880 GRFVLSIPELIF----QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFS--KIVDMCAKMLRRVNDEEGNIKKLVRE 953 (1692)
T ss_pred hhhhhccHHHHH----HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHhccchhHHHHHHHH
Confidence 999877654443 445566666778888999999999999999988763 33445444555556666667777777
Q ss_pred HHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccc
Q 005686 285 FWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (683)
Q Consensus 285 ~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~ 364 (683)
.+..+=-.+.....-.+-..+-++....
T Consensus 954 tf~klWF~p~~~~~d~~~~~~kI~~~~~---------------------------------------------------- 981 (1692)
T KOG1020|consen 954 TFLKLWFTPVPEVNDQPAKARKISLEVD---------------------------------------------------- 981 (1692)
T ss_pred HHHHHhccCCCcccccHHHHHhhHHHHH----------------------------------------------------
Confidence 6555411111111111111111111000
Q ss_pred ccHHHHHHHHHHHHHhhcCccchhhhHHH-HHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC
Q 005686 365 WNLRKCSAAALDVLSNVFGDEILPTLMPV-IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (683)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~-l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 443 (683)
....+. ..+..-.+.++.. +.....-... ..+...+...+.....-.... ...++...-.....
T Consensus 982 -----vv~~~~-----d~~~~~~eqLl~~ilk~~~~~~~~--~~~~~v~~~~v~~~~~L~~~c---l~~~i~ev~~~~~~ 1046 (1692)
T KOG1020|consen 982 -----VVMSQV-----DLMNDWLEQLLDHILKFYLLKTMK--ESVKPVALAKVTHVLNLLTHC---LVEKISEVESDDMN 1046 (1692)
T ss_pred -----HHHHHH-----HHhcChHHHHHHHHHHHHHhhhhh--hhhhHHHHhhcchHHHHHHHH---HHHHHHhhhhHhhh
Confidence 000011 0111111111111 1111100000 111111111111111100000 01112221111223
Q ss_pred CCChhHHHH-HHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccC-CccHHHHHHHHHHHHHHHhcccchHHHHHH
Q 005686 444 DKFPLIRSI-SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAAEELAPRLEII 521 (683)
Q Consensus 444 d~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~-~~~v~~~a~~al~~l~~~~~~~l~~~l~~i 521 (683)
+....+|.. .+.+|..|++..+.. ....+...+.|.|....+.. ...+....+..|..++.-....-..++..+
T Consensus 1047 ~~~~~~~~~~~lstL~~FskirP~L----lt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sL 1122 (1692)
T KOG1020|consen 1047 EEESEVRLLAYLSTLFVFSKIRPQL----LTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASL 1122 (1692)
T ss_pred cccchhHHHHHHHHHHHHHhcCchh----ccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHH
Confidence 344455544 455677777665543 12355555666554321110 011212222222222222223333456666
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcC---CCCC------cchhhHHhHHHHH
Q 005686 522 LQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL---PNSD------KDLFPLLECFTSI 592 (683)
Q Consensus 522 ~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~------~~~~~~~~~l~~l 592 (683)
=+.|+..+.+.+......++.|++.++......+ .....++..+...+..+ .+++ +.+.+.+-|+|.+
T Consensus 1123 Ee~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~---~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l 1199 (1692)
T KOG1020|consen 1123 EEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGA---KVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLL 1199 (1692)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhhhccch---HHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHH
Confidence 6667777776665666677888888887655554 35555555555544432 1122 1234678889988
Q ss_pred HHHh--------ccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccc
Q 005686 593 AQAL--------GAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG 654 (683)
Q Consensus 593 ~~~~--------g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 654 (683)
++.. |+.|......+...++.+|.-.... .+.++|..|+..+|.+|-.=.+-
T Consensus 1200 ~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~----------~~~~lR~~al~~Lg~~ci~hp~l 1259 (1692)
T KOG1020|consen 1200 SRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKD----------KDGELRRKALINLGFICIQHPSL 1259 (1692)
T ss_pred HHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHhhCchh
Confidence 8853 2344444556666666666654321 24579999999999988655544
No 65
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.94 E-value=9.2e-06 Score=80.98 Aligned_cols=350 Identities=14% Similarity=0.115 Sum_probs=185.5
Q ss_pred HHHHHHHHHhhhhhcC---ChHHHHHHHHHHHHHHhhc--CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 90 NQQYIKSELLPCLGAA---DRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 90 ~~~~i~~~Ll~~l~~~---~~~vr~~~~~~l~~i~~~~--~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
.+-.+.+-....+.+. ...-|+.+..++..+...+ +...-.+++-.+.+++++.|+..|+....++..+..-..+
T Consensus 19 ~~~t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted 98 (898)
T COG5240 19 TERTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED 98 (898)
T ss_pred hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh
Confidence 3445555566666543 3456666777777776554 3566778899999999999999999988888777664443
Q ss_pred ccccCCCCCCcchhHhhHHHHHHhhcCCCH-HHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHH
Q 005686 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (683)
.+ .....+++-++.+.+ .+|-.|++.|..++.. .....++.++. +..-++...++..++-
T Consensus 99 vl-------------m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~---~tv~~~er~l~---~a~Vs~~~a~~saalv 159 (898)
T COG5240 99 VL-------------MGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDG---ETVYDFERYLN---QAFVSTSMARRSAALV 159 (898)
T ss_pred hh-------------HHHHHHHHhhccCCccccccHHHHHHHHhcCc---chhhhHHHHhh---hhccccchhhhhhHHH
Confidence 21 223345555555544 7788888877766532 22222322222 1222333344443332
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHHhhc------------CCChHHHHHHhhHHHHhhccC--------------C-c-
Q 005686 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNK------------DTDDDVALEACEFWHSYFEAQ--------------L-P- 295 (683)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~------------~~~~~vr~~a~~~l~~l~~~~--------------~-~- 295 (683)
.-..+.-........+..+.-+..+..-+ +..+-..-.|+.+|..+-+.. . .
T Consensus 160 ~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smk 239 (898)
T COG5240 160 VAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMK 239 (898)
T ss_pred HhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccc
Confidence 22222211111122222221111111100 001111222333332222110 0 0
Q ss_pred ---------------hhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcc
Q 005686 296 ---------------HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (683)
Q Consensus 296 ---------------~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~ 360 (683)
...-..++.++.|.+-.|+++.- |
T Consensus 240 nq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~------------------------------------e----- 278 (898)
T COG5240 240 NQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKF------------------------------------E----- 278 (898)
T ss_pred cchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcc------------------------------------h-----
Confidence 00001222333333333332110 0
Q ss_pred ccccccHHHHHHHHHHHHHhhc-CccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhh---hhhHHHHHH
Q 005686 361 IVNVWNLRKCSAAALDVLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL---YPHLSEIVA 436 (683)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~---~~~~~~l~~ 436 (683)
.+...++.++..++... +++.++..+..+..+++++. ...|.+|+..+..++...++.+ .+.++.
T Consensus 279 -----mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~r---v~~rFsA~Riln~lam~~P~kv~vcN~evEs--- 347 (898)
T COG5240 279 -----MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTR---VVLRFSAMRILNQLAMKYPQKVSVCNKEVES--- 347 (898)
T ss_pred -----hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHhhCCceeeecChhHHH---
Confidence 24445667777777665 77888899999999999988 8999999999999998766433 223333
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchH
Q 005686 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (683)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~ 516 (683)
.+.|.+ |..+.+++..+-+.- ..+.++.++..+...++|-+..-+.-+..|+.+++-.++..-..
T Consensus 348 ----LIsd~N---r~IstyAITtLLKTG--------t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s 412 (898)
T COG5240 348 ----LISDEN---RTISTYAITTLLKTG--------TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS 412 (898)
T ss_pred ----Hhhccc---ccchHHHHHHHHHcC--------chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH
Confidence 334555 344555565555432 34566777777777666655555555667777776666555445
Q ss_pred HHHHHHHHH
Q 005686 517 RLEIILQHL 525 (683)
Q Consensus 517 ~l~~i~~~L 525 (683)
|++-+...|
T Consensus 413 ~l~FL~~~L 421 (898)
T COG5240 413 YLDFLGSSL 421 (898)
T ss_pred HHHHHHHHH
Confidence 555444433
No 66
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.91 E-value=5.5e-08 Score=92.09 Aligned_cols=184 Identities=20% Similarity=0.249 Sum_probs=130.1
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhC-----ccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhh
Q 005686 230 SNDPSAEVRKLVCAAFNLLIEVR-----PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP 304 (683)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 304 (683)
..+.+++.|..++..|..++... +..+..++..++..+...+.+....+...|+.++..++.. ....+.++++
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~--l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ--LGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH--HGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HhHhHHHHHH
Confidence 35678999999999999998776 2333344555556666666766677889999999999887 5556889999
Q ss_pred hhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc
Q 005686 305 RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (683)
Q Consensus 305 ~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~ 384 (683)
.++|.++..+..+.. .+|.+|..++..+....+
T Consensus 94 ~~l~~Ll~~~~~~~~----------------------------------------------~i~~~a~~~L~~i~~~~~- 126 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKK----------------------------------------------FIREAANNALDAIIESCS- 126 (228)
T ss_dssp HHHHHHHHGGG---H----------------------------------------------HHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHccccH----------------------------------------------HHHHHHHHHHHHHHHHCC-
Confidence 999999888765331 378899999999999887
Q ss_pred cchhhh-HHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch---hhhhh--hHHHHHHHHhhccCCCChhHHHHHHHHHH
Q 005686 385 EILPTL-MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI---KGLYP--HLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (683)
Q Consensus 385 ~~~~~l-~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~---~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 458 (683)
..+.+ .+.+.....+.+ +..|..++.++..+....+ ..+.. .++.+.+.+...+.|.++.||.+|-.++.
T Consensus 127 -~~~~~~~~~l~~~~~~Kn---~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 127 -YSPKILLEILSQGLKSKN---PQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp -H--HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 11234 677777777777 9999999999999988776 34433 35889999999999999999999999999
Q ss_pred HHHHHHHh
Q 005686 459 RFSKFIVQ 466 (683)
Q Consensus 459 ~l~~~~~~ 466 (683)
.+.+.++.
T Consensus 203 ~l~~~~~~ 210 (228)
T PF12348_consen 203 ALYSHFPE 210 (228)
T ss_dssp HHHHHH-H
T ss_pred HHHHHCCH
Confidence 99887764
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.7e-06 Score=88.30 Aligned_cols=293 Identities=13% Similarity=0.123 Sum_probs=177.8
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccch
Q 005686 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (683)
Q Consensus 134 ~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~ 213 (683)
..+.+-+++++.-+.-.|+.+++.++. .+ ....+.|.+.+.++++++.+|+.|+-|...++...|+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s---~E-----------mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~ 175 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICS---PE-----------MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD 175 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCC---HH-----------HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch
Confidence 444445556666566666666666543 22 2467788888888889999999999999888877654
Q ss_pred hhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh---hhHHHHHHHHHHhhc-----------CCChHHH
Q 005686 214 ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE---PHLRNLFEYMLQVNK-----------DTDDDVA 279 (683)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~l~~l~~~~~~~~~-----------~~~~~vr 279 (683)
.. ..|++...+++.+.+..|....+..+..+++..++.+. ...+.++..+-+... -.++-+.
T Consensus 176 l~----e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQ 251 (866)
T KOG1062|consen 176 LV----EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQ 251 (866)
T ss_pred HH----HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHH
Confidence 33 23355555556666666766777777777777654442 222233332222211 0245556
Q ss_pred HHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCc
Q 005686 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (683)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~ 359 (683)
...+.+|.-+.+.... ....+..++..+.. .++.
T Consensus 252 i~iLrlLriLGq~d~d---aSd~M~DiLaqvat---ntds---------------------------------------- 285 (866)
T KOG1062|consen 252 IRILRLLRILGQNDAD---ASDLMNDILAQVAT---NTDS---------------------------------------- 285 (866)
T ss_pred HHHHHHHHHhcCCCcc---HHHHHHHHHHHHHh---cccc----------------------------------------
Confidence 6666666666554111 11111111111111 0100
Q ss_pred cccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHH
Q 005686 360 DIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFL 438 (683)
Q Consensus 360 ~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l 438 (683)
..+.. .....+|...+....++ ......++.+.+++.+++ -..|+.|+..|..+...-+.....|- ..+
T Consensus 286 skN~G---nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d---~NirYvaLn~L~r~V~~d~~avqrHr----~tI 355 (866)
T KOG1062|consen 286 SKNAG---NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD---NNIRYVALNMLLRVVQQDPTAVQRHR----STI 355 (866)
T ss_pred cccch---hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc---cceeeeehhhHHhhhcCCcHHHHHHH----HHH
Confidence 00000 01134455555554544 344455677778888777 78899999999988876665544454 467
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc
Q 005686 439 IPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (683)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (683)
+.+++|+++.+|+.|+..+-.+. ....+..++..++..|...++..+...+.-+..+++...
T Consensus 356 leCL~DpD~SIkrralELs~~lv-----------n~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfa 417 (866)
T KOG1062|consen 356 LECLKDPDVSIKRRALELSYALV-----------NESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFA 417 (866)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHh-----------ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999987766554 245667777788888777778888888888888887763
No 68
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=4.9e-06 Score=86.46 Aligned_cols=403 Identities=16% Similarity=0.134 Sum_probs=221.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHh-cCCChHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHH
Q 005686 19 RLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (683)
Q Consensus 19 ~~l~~~~s~~~~~~r~~A~~~L~~~~-~~p~~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 96 (683)
.++..+...|-+ .+|-...+|..+. ..|+-.......+..+ ++.++.+|..|...+... =.+...+++..
T Consensus 53 dvvk~~~T~dle-lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~ 124 (734)
T KOG1061|consen 53 DVVKCMQTRDLE-LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL-------RVDKITEYLCD 124 (734)
T ss_pred HHHhhcccCCch-HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE-------eehHHHHHHHH
Confidence 444455455555 6666666666654 3565433333433323 466788888777544210 11345567778
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCc
Q 005686 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (683)
Q Consensus 97 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (683)
-+..++.+.++.+|+.++.+++.+...... ..-.++++.+..++.++++.+...|+.+|..+.+..+.....
T Consensus 125 Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~------- 197 (734)
T KOG1061|consen 125 PLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL------- 197 (734)
T ss_pred HHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc-------
Confidence 888899999999999999999998876532 233567888888888999999999999999998877642111
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 005686 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (683)
Q Consensus 176 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (683)
.....+...++..+..-+.--+...++++..+. |+.- .....+++.+...+++.++.+.-.+.+++..++......
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~---p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~ 273 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYV---PKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV 273 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC---CCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH
Confidence 122445555555555544444555555554443 3222 122344555555555555555555555555544433331
Q ss_pred hhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc-CC-ch--------hhHH------------------hhhhhhH
Q 005686 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QL-PH--------ENLK------------------EFLPRLV 307 (683)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~-~~-~~--------~~~~------------------~~l~~l~ 307 (683)
-......+-+.++..+.... ++.-.++.-+.-+... +. .. +... ..+.+++
T Consensus 274 ~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl 352 (734)
T KOG1061|consen 274 NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVL 352 (734)
T ss_pred HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHH
Confidence 11122222222222222211 3322232222221111 00 00 0000 0111111
Q ss_pred HHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccch
Q 005686 308 PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL 387 (683)
Q Consensus 308 ~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 387 (683)
..+..+... .| ...-+.+.++++.++....+.
T Consensus 353 ~El~eYate----------------------------------------vD------~~fvrkaIraig~~aik~e~~-- 384 (734)
T KOG1061|consen 353 AELKEYATE----------------------------------------VD------VDFVRKAVRAIGRLAIKAEQS-- 384 (734)
T ss_pred HHHHHhhhh----------------------------------------hC------HHHHHHHHHHhhhhhhhhhhh--
Confidence 111111000 00 123455778888888777664
Q ss_pred hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC-CChhHHHHHHHHHHHHHHHHHh
Q 005686 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQ 466 (683)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 466 (683)
..++..+.+.++-.. -.+...++..+..+...++.. .+.+++.+...+.. ++|..|.+-.|.+|++++.++.
T Consensus 385 ~~cv~~lLell~~~~---~yvvqE~~vvi~dilRkyP~~----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~ 457 (734)
T KOG1061|consen 385 NDCVSILLELLETKV---DYVVQEAIVVIRDILRKYPNK----YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN 457 (734)
T ss_pred hhhHHHHHHHHhhcc---cceeeehhHHHHhhhhcCCCc----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc
Confidence 456666666665332 234444555555555555432 24455555555543 5688999999999999998764
Q ss_pred hhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 005686 467 DIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (683)
Q Consensus 467 ~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l 506 (683)
. ..++..+++.+.|....||..-..|..++
T Consensus 458 a----------~elL~~f~en~~dE~~~Vql~LLta~ik~ 487 (734)
T KOG1061|consen 458 A----------LELLESFLENFKDETAEVQLELLTAAIKL 487 (734)
T ss_pred H----------HHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 3 55667777777877777777766665553
No 69
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.6e-05 Score=80.45 Aligned_cols=442 Identities=13% Similarity=0.118 Sum_probs=245.9
Q ss_pred CChHHHHHH-HhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhc-CChHHHHHHHHHHHHHHhhc
Q 005686 47 PDFNNYLAF-ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLG 124 (683)
Q Consensus 47 p~~~~~l~~-il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~-~~~~vr~~~~~~l~~i~~~~ 124 (683)
|+++...++ ++..-++.+..+|..||--+++...+ ++.+...++...++..++. ++...-+.++.+++.++...
T Consensus 336 ~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r----lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR----LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc----CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 444443333 23322377899999999888876544 6677888888888887753 34677789999999999875
Q ss_pred --CcCChHHHHHHHHHHhc--------cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHH-HHhhcCCC
Q 005686 125 --GIAGWLELLQALVTCLD--------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL-LQFFQSPH 193 (683)
Q Consensus 125 --~~~~~~~l~~~l~~~l~--------s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~l~~~~ 193 (683)
.+....+++|.+.+.+. +.-..+|.+|..++=.+.+.+..... .+.+..+.+.+ ..++=|++
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l-------~p~l~~L~s~LL~~AlFDre 484 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL-------KPVLQSLASALLIVALFDRE 484 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh-------hHHHHHHHHHHHHHHhcCch
Confidence 56777889999988774 22347899999888888877664321 12334444443 34567888
Q ss_pred HHHHHHHHHHHHHHHhcc---ch--h-------------------hH---HhHHH----HHHHHHhh-hCCCCHHHHHHH
Q 005686 194 TSLRKLSLGSVNQFIMLM---PS--A-------------------LF---VSMDQ----YLQGLFLL-SNDPSAEVRKLV 241 (683)
Q Consensus 194 ~~vr~~a~~~l~~~~~~~---~~--~-------------------~~---~~~~~----~l~~l~~~-~~~~~~~~~~~~ 241 (683)
-..|.+|.-++...+... |. + +. ..++. +++.++.. ..+-+..+|..+
T Consensus 485 vncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred hhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 899999998887666432 10 0 00 01122 23333322 445678899999
Q ss_pred HHHHHHHHhhCccchh-hhHHHHHHHHHHhhcCCChHHHHHHh----hHHHHhhccCCchhhHHhhhhhhHHHHHhhccc
Q 005686 242 CAAFNLLIEVRPSFLE-PHLRNLFEYMLQVNKDTDDDVALEAC----EFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIY 316 (683)
Q Consensus 242 ~~~l~~l~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~vr~~a~----~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~ 316 (683)
..+|..+....|+.+. -+++.+++... ..+...|.-+. +++.++-.. .|.+..+...-+..+..
T Consensus 565 a~aL~~Ls~~~pk~~a~~~L~~lld~~l----s~~~~~r~g~~la~~ev~~~~~~l-------~~~~~~l~e~~i~~l~~ 633 (1133)
T KOG1943|consen 565 AYALHKLSLTEPKYLADYVLPPLLDSTL----SKDASMRHGVFLAAGEVIGALRKL-------EPVIKGLDENRIAGLLS 633 (1133)
T ss_pred HHHHHHHHHhhHHhhcccchhhhhhhhc----CCChHHhhhhHHHHHHHHHHhhhh-------hhhhhhhHHHHhhhhhh
Confidence 9999999999988877 45566666433 23444444333 333333221 11111111111111000
Q ss_pred ChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchh-hhHH---
Q 005686 317 ADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP-TLMP--- 392 (683)
Q Consensus 317 ~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~--- 392 (683)
-+.|++... .. ....--.|.+....+..+...-. ...+ .+..
T Consensus 634 ---------------------ii~~~~~~~-------~~-----rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~ 679 (1133)
T KOG1943|consen 634 ---------------------IIPPICDRY-------FY-----RGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQ 679 (1133)
T ss_pred ---------------------hccHHHHHH-------hc-----cchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHH
Confidence 000000000 00 00000012222222222211111 1111 2222
Q ss_pred -HHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCC-ChhHHHHHHHHHHHHHHHHHhhhC
Q 005686 393 -VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIG 469 (683)
Q Consensus 393 -~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~ 469 (683)
.+.+.+++++ ..|.++..+++.++..... ..+... .++...+..+.++ +..+|....-++|.+...+-.
T Consensus 680 ~ll~~~l~~~n----~i~~~av~av~~l~s~y~~-~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~--- 751 (1133)
T KOG1943|consen 680 MLLAQNLTLPN----QIRDAAVSAVSDLVSTYVK-ADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH--- 751 (1133)
T ss_pred HHHHHhhcchH----HHHHHHHHHHHHHHHHHHh-cCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc---
Confidence 2333333222 6889999999988765421 112222 3556666666554 788888877788877654421
Q ss_pred CCcchhhHHHHHHHHHHHhccC-CccHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHhh--------HhHHHH
Q 005686 470 HQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQ--------RRNLRI 539 (683)
Q Consensus 470 ~~~~~~~~~~~l~~l~~~l~d~-~~~v~~~a~~al~~l~~~~~-~~l~~~l~~i~~~L~~~l~~~~--------~~~~~~ 539 (683)
..+-+.+...++...... .+.-|...+.++..+++..+ ......+..+++.|.+.+.++. .-+++.
T Consensus 752 ----~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVRea 827 (1133)
T KOG1943|consen 752 ----RHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREA 827 (1133)
T ss_pred ----hHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHH
Confidence 222233344444333322 56678889999999988775 2333445556666666666652 345668
Q ss_pred HHHHHHHHHHHhc-cccC
Q 005686 540 VYDAIGTLADAVG-FELN 556 (683)
Q Consensus 540 ~~~~l~~l~~~~~-~~~~ 556 (683)
++.++..+...+. +++.
T Consensus 828 Am~al~~~~~~l~~p~~l 845 (1133)
T KOG1943|consen 828 AMKALSSLLDTLSSPKLL 845 (1133)
T ss_pred HHHHHHhhhhhhcCcccc
Confidence 8888888777654 4443
No 70
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.84 E-value=7.7e-08 Score=91.08 Aligned_cols=182 Identities=17% Similarity=0.124 Sum_probs=130.4
Q ss_pred cccccHHHHHHHHHHHHHhhc-Cccchhhh-------HHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHH
Q 005686 362 VNVWNLRKCSAAALDVLSNVF-GDEILPTL-------MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE 433 (683)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l-------~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~ 433 (683)
+.+|..|..+...+..+.... +....+.+ +..+...+.+.. ..+...|+.++..++...+..+.++++.
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R---s~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR---SKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 356999999999999888766 22222222 244445555555 6788889999999999998889999999
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHH-HHHHHHHhccCCccHHHHHHHHHHHHHHHhc-
Q 005686 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV-LMGLLKRILDTNKRVQEAACSAFATLEEEAA- 511 (683)
Q Consensus 434 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~- 511 (683)
++|.++..+.+.+..+|.+|..+|..+++.++ +...+ ++.+...+++.++.+|..++..+..+++..+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS----------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999988653 22344 6667777888899999999999999998877
Q ss_pred --ccchH--HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccC
Q 005686 512 --EELAP--RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (683)
Q Consensus 512 --~~l~~--~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 556 (683)
..+.. .++.+.+.+...+.+.+.+++..+-.++..+....|....
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 44543 4688999999999999889999999999999888876653
No 71
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.2e-05 Score=78.41 Aligned_cols=454 Identities=12% Similarity=0.089 Sum_probs=249.6
Q ss_pred ChHHHHHHHHHHHHHHhhc----CcCChHHHHHH---------HHHHhccCChhHHhHHHHHHHHHHhhchhcccc---C
Q 005686 106 DRHIRSTVGTIVSVVVQLG----GIAGWLELLQA---------LVTCLDSNDINHMEGAMDALSKICEDIPQVLDS---D 169 (683)
Q Consensus 106 ~~~vr~~~~~~l~~i~~~~----~~~~~~~l~~~---------l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~---~ 169 (683)
...||..+-.++....+.. .-++|.-++|+ +.-.++++++..|-.++.++..+.++...++.. -
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 4567777777777666543 35788877754 223467889999999999999998876654421 0
Q ss_pred CCCCCcchh-------HhhHHHHHHhh-cCCCHHHHHHHHHHHHHHHhccchh-h-HHhHHHHHHHHHhhhCCCCHHHHH
Q 005686 170 VPGLAECPI-------NIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMPSA-L-FVSMDQYLQGLFLLSNDPSAEVRK 239 (683)
Q Consensus 170 ~~~~~~~~~-------~~i~~~l~~~l-~~~~~~vr~~a~~~l~~~~~~~~~~-~-~~~~~~~l~~l~~~~~~~~~~~~~ 239 (683)
-...|++.. -.....++-.+ ....+.+-...+||+..+++..|-. + ...+.++++.+-..+.+.|+.++.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 011111111 11112223333 3345677888999999999887622 1 123345666666777788889998
Q ss_pred HHHHHHHHHHhhCccchhhhHHHHHHH-----------------------------------------------H-----
Q 005686 240 LVCAAFNLLIEVRPSFLEPHLRNLFEY-----------------------------------------------M----- 267 (683)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~~l~~l~~~-----------------------------------------------~----- 267 (683)
.++..+..++...... |.+...++. +
T Consensus 169 s~l~~~~~~v~t~~~~--pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~ 246 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAPL--PEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVV 246 (728)
T ss_pred HHHHHHHHHHhcCCCC--HHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeee
Confidence 8888887776543210 111111110 0
Q ss_pred ------------HHhhcC--CChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCC
Q 005686 268 ------------LQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLP 333 (683)
Q Consensus 268 ------------~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~ 333 (683)
..+..+ ....+|..+++.+..++.+ ....+-++.++.-.+-..+.+...
T Consensus 247 ~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~p-------------- 309 (728)
T KOG4535|consen 247 LPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEADP-------------- 309 (728)
T ss_pred cCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCCh--------------
Confidence 000000 0112566677666666664 223334444444444333332211
Q ss_pred CccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchh------hhH-HHHH---------HH
Q 005686 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP------TLM-PVIQ---------AK 397 (683)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~------~l~-~~l~---------~~ 397 (683)
++...+..++..+....+.+..| ... ++.. ..
T Consensus 310 --------------------------------~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~ 357 (728)
T KOG4535|consen 310 --------------------------------SIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRAL 357 (728)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhh
Confidence 23334555666655554321111 011 1111 11
Q ss_pred HccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC-CChhHHHHHHHHHHHHHHHHHhhhCCCcchhh
Q 005686 398 LSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (683)
Q Consensus 398 l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 476 (683)
..+.. .....+.+.++..+.......+.+--....+..+...+| .+..||.+|..+.+-+.-+-... ....+
T Consensus 358 YDs~~---~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr----~d~~f 430 (728)
T KOG4535|consen 358 YDSEH---PTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR----QDVIF 430 (728)
T ss_pred hhhcC---CCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh----hhHHH
Confidence 12223 455667777777776544333433223344555555554 56678888888877775443211 23345
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccc-------hHHHHHHHHHHHHHHHHh---hHhHHHHHHHHHHH
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL-------APRLEIILQHLMMAFGKY---QRRNLRIVYDAIGT 546 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l-------~~~l~~i~~~L~~~l~~~---~~~~~~~~~~~l~~ 546 (683)
.......+...+.|..-.+|..+.++++.+...+-..+ .......+..+...-... ++++...+++++++
T Consensus 431 v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgn 510 (728)
T KOG4535|consen 431 VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGN 510 (728)
T ss_pred HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhh
Confidence 56677778888888778899999999999988773222 123334444444443332 24566689999999
Q ss_pred HHHHhccccCchhHHHhhhHHHHHHHh-c-CCCCCcch-hhHHhHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHH
Q 005686 547 LADAVGFELNQPVYLDILMPPLIAKWQ-Q-LPNSDKDL-FPLLECFTSIAQALGA--GFTQFAQPVFQRCINIIQTQQ 619 (683)
Q Consensus 547 l~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~-~~~~~~l~~l~~~~g~--~f~~~~~~~~~~l~~~l~~~~ 619 (683)
+...+.+-.. +-+..++..-+..+. . .......+ ..++-.++++.+.-.- .=.++++.+++.+..++.+..
T Consensus 511 llQvlq~i~~--~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 511 LLQFLQPIEK--PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HHHHHHHhhh--ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 8887653321 344444433222111 1 11011112 3677778888764222 235789999999988887764
No 72
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.79 E-value=7.5e-07 Score=96.01 Aligned_cols=285 Identities=14% Similarity=0.097 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHhhc-CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHH
Q 005686 109 IRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ 187 (683)
Q Consensus 109 vr~~~~~~l~~i~~~~-~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 187 (683)
-+..+...+..++... .......++|.++.++.++...+|..|+..|..+.....+.-..+. . -..+-++|.+-.
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da-n---iF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA-N---IFPEYLFPHLNH 514 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc-h---hhHhhhhhhhHh
Confidence 3445666666666653 4566788999999999999999999999999888776554322111 1 124668888888
Q ss_pred hhcC-CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHh--hhCCCCHHHHHHHHHHHHHHHh-hCccchhhhHHHH
Q 005686 188 FFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL--LSNDPSAEVRKLVCAAFNLLIE-VRPSFLEPHLRNL 263 (683)
Q Consensus 188 ~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~l~~l 263 (683)
++.| ....||.+-..++..++...- .+-.+...+-. ..++++.+ ...+ .+..........+
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~-----rFle~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAY-----RFLELTQELRQAGMLNDPNSE----------TAPEQNYNTELQALHHTV 579 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHH-----HHHHHHHHHHhcccccCcccc----------cccccccchHHHHHHHHH
Confidence 8888 566889888888888765421 11112222222 23444432 1111 1111222222223
Q ss_pred HHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCccc
Q 005686 264 FEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRF 343 (683)
Q Consensus 264 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~ 343 (683)
-+.....+.++++-||+.-++-+.-+|.-....+ .-+-+++.+..++-+
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLND--------------------------- 628 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLND--------------------------- 628 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcC---------------------------
Confidence 3344455677777888888888777765411111 111234444443321
Q ss_pred ccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc-chhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhc
Q 005686 344 HSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (683)
Q Consensus 344 ~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~ 422 (683)
.+|.+|.+..+.+..++-..|.. +-..++|.+.+.+++++ ..+-..|+.++..+++.
T Consensus 629 -------------------kDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~E---E~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 629 -------------------KDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGE---EAVIVSALGSLSILIKL 686 (1431)
T ss_pred -------------------ccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcc---hhhHHHHHHHHHHHHHh
Confidence 13789999877777777778885 56788999999999988 88888889998888874
Q ss_pred chhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHh
Q 005686 423 CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (683)
Q Consensus 423 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (683)
-. --++++.+++..+.+.|.+++..||++++..|......+..
T Consensus 687 ~l-l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 687 GL-LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred cc-cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 21 11467888899999999999999999999999888877654
No 73
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.78 E-value=3.2e-05 Score=79.95 Aligned_cols=353 Identities=16% Similarity=0.169 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHhhcCcCChHHHHHHHHHHhcc-----CChhHHhHHHHHHHHHHhhchhcc-ccCCCCCCcchhH-hhHH
Q 005686 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDIPQVL-DSDVPGLAECPIN-IFLP 183 (683)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s-----~~~~~r~~al~~l~~l~~~~~~~~-~~~~~~~~~~~~~-~i~~ 183 (683)
...-.+++.++.. +..|..+.+.+...+.. .+.......+.++..+.+...... ..+. ..+.+ .++|
T Consensus 20 ~~~L~~l~~ls~~--~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~----~~y~~~~lv~ 93 (415)
T PF12460_consen 20 ERILEALAALSTS--PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDN----SWYFHRILVP 93 (415)
T ss_pred HHHHHHHHHHHCC--hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchH----HHHHHhHHHH
Confidence 3444455555543 34566665555554432 255667778888888877665443 1111 11222 2666
Q ss_pred HHHHhhcC-----C--CHHHHHHHHHHHHHHHhccchhhHHh-HHHHHHHHHhh-----hC-CCC--HHHHHHHHHHHHH
Q 005686 184 RLLQFFQS-----P--HTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLL-----SN-DPS--AEVRKLVCAAFNL 247 (683)
Q Consensus 184 ~l~~~l~~-----~--~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~-----~~-~~~--~~~~~~~~~~l~~ 247 (683)
.+++.... . +..+-..+...+..++..++..-... +..+...+... +. +.. ..........+..
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (415)
T PF12460_consen 94 RLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSA 173 (415)
T ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHH
Confidence 66665432 1 24666667777777777776544332 23333333310 00 111 1122233333444
Q ss_pred HHh-hCccchhhhHHHHHHHHHHhh-cCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhh
Q 005686 248 LIE-VRPSFLEPHLRNLFEYMLQVN-KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (683)
Q Consensus 248 l~~-~~~~~~~~~l~~l~~~~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~ 325 (683)
++. ..++...+....++..++... ...++..|..++.++..++..-.....+..++..+...+ ....
T Consensus 174 il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~----~~~~------- 242 (415)
T PF12460_consen 174 ILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI----SSSE------- 242 (415)
T ss_pred HHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh----cccC-------
Confidence 433 333333345555666555553 344577889999999888876222222333333332222 0000
Q ss_pred hcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc---CccchhhhHHHHHHHHccCC
Q 005686 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---GDEILPTLMPVIQAKLSASG 402 (683)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~---~~~~~~~l~~~l~~~l~~~~ 402 (683)
. ...|..+...+.-+++.+ +......++..+.+.+.+
T Consensus 243 ---------------------------~-----------~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~-- 282 (415)
T PF12460_consen 243 ---------------------------D-----------SELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS-- 282 (415)
T ss_pred ---------------------------C-----------cchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--
Confidence 0 012344555554455544 334444566666677765
Q ss_pred CCChhhHHHHHHHHHHHHhcchhh-------------hhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhC
Q 005686 403 DEAWKDREAAVLALGAIAEGCIKG-------------LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (683)
Q Consensus 403 ~~~~~~r~aal~~l~~l~~~~~~~-------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (683)
......+..+++.+....++. -..++..++|.+++.++..+...|.....+++.+.++++..
T Consensus 283 ---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~-- 357 (415)
T PF12460_consen 283 ---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKS-- 357 (415)
T ss_pred ---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHH--
Confidence 456778888888777653211 13467788999999998877778999999999999998865
Q ss_pred CCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 005686 470 HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMM 527 (683)
Q Consensus 470 ~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~ 527 (683)
....+++.++|.+++.|.-+++.++.+++.++..+++...+.+.+|++.+++.|++
T Consensus 358 --vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 358 --VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 57788999999999999988889999999999999999988999999999998876
No 74
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.76 E-value=8.8e-08 Score=74.75 Aligned_cols=94 Identities=17% Similarity=0.307 Sum_probs=82.5
Q ss_pred hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHH
Q 005686 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (683)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~ 225 (683)
+.|.+++.+|..++...+.... .+++.++|.++.++.|++++||..|++++..++......+.+++.++++.
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~--------~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~ 72 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDIS--------KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDA 72 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHH--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999998887643 56899999999999999999999999999999988888888899999999
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHH
Q 005686 226 LFLLSNDPSAEVRKLVCAAFNLL 248 (683)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~l~~l 248 (683)
+++...|++++||..+ +.|..+
T Consensus 73 L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 73 LCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHcCCchhHHHHH-HHHHHH
Confidence 9999999999998766 454444
No 75
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=0.00035 Score=71.36 Aligned_cols=303 Identities=17% Similarity=0.220 Sum_probs=181.9
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccch--
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL-- 256 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-- 256 (683)
+..+..+.....+.+..||..|++.+..+.+.. ..-..+.+...+.+.|.+++||++|++.+....+.+|...
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 455566888889999999999999998876631 1122345666777889999999999999888877774211
Q ss_pred ----hhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhh-hhHHHHHhhcccChhh-----hhhhhh
Q 005686 257 ----EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDD-----ESLVEA 326 (683)
Q Consensus 257 ----~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d-----~~~~~~ 326 (683)
..+....+.-+...+.|-+..||..|.+.++.+-.. ..+.+..-++ +++..+-.+-...+.. ...|..
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v--See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV--SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh--HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 123344555555667788888999998888776443 2233333222 2233222111100000 000100
Q ss_pred cccCCCCCccCCCCcccccccCCCCCCC-CCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCC
Q 005686 327 EEDESLPDRDQDLKPRFHSSRLHGSENP-EDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA 405 (683)
Q Consensus 327 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 405 (683)
. +--+.+-. +++|+.+ . ++ .... .+| . +...+.++-
T Consensus 350 G-------------------k~~~advpsee~d~~~-~--si--I~sG-------ACG-----A----~VhGlEDEf--- 386 (823)
T KOG2259|consen 350 G-------------------KEWNADVPSEEDDEEE-E--SI--IPSG-------ACG-----A----LVHGLEDEF--- 386 (823)
T ss_pred C-------------------ccccccCchhhccccc-c--cc--cccc-------ccc-----e----eeeechHHH---
Confidence 0 00000000 0011100 0 00 0000 111 1 122344444
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (683)
.++|.||+..+..++...+. +-...+.++...++|+...||..|..++..++.++. .. +..++.++
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~----eeql~~il 452 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IR----EEQLRQIL 452 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ec----HHHHHHHH
Confidence 88999999999999876543 335567889999999999999999999999998854 23 34456666
Q ss_pred HHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005686 486 KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (683)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (683)
..|.|.++.+|.+. ..++..++-.=...+...+..|.+.+..+. .....++.|++.+.++
T Consensus 453 ~~L~D~s~dvRe~l----~elL~~~~~~d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 453 ESLEDRSVDVREAL----RELLKNARVSDLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQN 512 (823)
T ss_pred HHHHhcCHHHHHHH----HHHHHhcCCCcHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhcc
Confidence 77788888888764 444455544444567777788888777762 3344667777777554
No 76
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.74 E-value=6.7e-05 Score=77.53 Aligned_cols=363 Identities=15% Similarity=0.165 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHH----hhhc--cCCCHHHHHHHHHHHHHHHHHhhccC-CHhHHHH----HHHHHhh
Q 005686 32 DKSQIWQQLQQYSQFPDFNNYLAFI----LARA--EGKSVEIRQAAGLLLKNNLRTAYKSM-SPSNQQY----IKSELLP 100 (683)
Q Consensus 32 ~r~~A~~~L~~~~~~p~~~~~l~~i----l~~~--~~~~~~~R~~a~~~l~~~i~~~w~~l-~~~~~~~----i~~~Ll~ 100 (683)
..+...+.|.++...++++..+... +... ++.+...-+.....+.+.+.+.+... ..+.-.+ +...++.
T Consensus 18 ~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~ 97 (415)
T PF12460_consen 18 NYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFE 97 (415)
T ss_pred HHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHH
Confidence 6777778888888777765433322 2210 12255666677777878887776655 2222222 4444444
Q ss_pred hhh-----cC--ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc----------cCCh--hHHhHHHHHHHHHHhh
Q 005686 101 CLG-----AA--DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD----------SNDI--NHMEGAMDALSKICED 161 (683)
Q Consensus 101 ~l~-----~~--~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~----------s~~~--~~r~~al~~l~~l~~~ 161 (683)
... +. +..+-..++.+++.+++..+...=.+++..+...+. +... ......+..+..+...
T Consensus 98 ~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~ 177 (415)
T PF12460_consen 98 LALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCS 177 (415)
T ss_pred HHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHc
Confidence 332 12 256777888999999988766666666666666554 1111 1223344445555555
Q ss_pred chhccccCCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhh-CCCCHHHHH
Q 005686 162 IPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRK 239 (683)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~ 239 (683)
......- .....++..++....+ .++..|..+++++..++...++.- .+..++..+.... .......+.
T Consensus 178 l~~~~~~-------~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 178 LRKDVSL-------PDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred CCcccCc-------cCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhH
Confidence 5443220 1245577777776544 568999999999999997654321 3444455544443 334455566
Q ss_pred HHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChh
Q 005686 240 LVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADD 319 (683)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 319 (683)
.+++.+..+.+..--.-.|.-..++..++..+.+ +++...+.+.+.-+... ... ++.
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d--~~~----~l~--------------- 305 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSD--SDD----VLN--------------- 305 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcC--cHH----hcC---------------
Confidence 6666665544322111122233344444444444 33333333333333221 000 000
Q ss_pred hhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHc
Q 005686 320 DESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS 399 (683)
Q Consensus 320 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 399 (683)
...+..+|- .+.+.++..++|.+.+.+.
T Consensus 306 -----------------------------------------~~~~a~vkl-----------LykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 306 -----------------------------------------KENHANVKL-----------LYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred -----------------------------------------ccccchhhh-----------HHhHHHHHHHHHHHHHHHh
Confidence 000001111 1234556678888888887
Q ss_pred cCCCCChhhHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHH
Q 005686 400 ASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE 478 (683)
Q Consensus 400 ~~~~~~~~~r~aal~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 478 (683)
..+ -..|...+.+++.+.++.+.. +.++++.++|.++++|.-+++.++.+++.++..+.+.-+. ...++++
T Consensus 334 ~~~---~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~-----~i~~hl~ 405 (415)
T PF12460_consen 334 EAD---DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE-----LISEHLS 405 (415)
T ss_pred hcC---hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH-----HHHHHHH
Confidence 765 458999999999999998765 4689999999999999989999999999999998876644 3677888
Q ss_pred HHHHHHHH
Q 005686 479 KVLMGLLK 486 (683)
Q Consensus 479 ~~l~~l~~ 486 (683)
.+++.+++
T Consensus 406 sLI~~LL~ 413 (415)
T PF12460_consen 406 SLIPRLLK 413 (415)
T ss_pred HHHHHHHh
Confidence 88888875
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.8e-06 Score=79.01 Aligned_cols=344 Identities=15% Similarity=0.102 Sum_probs=215.7
Q ss_pred HhhhhhcCChHHHHHHHHHHHHHHhhcCc-C---ChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 005686 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI-A---GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (683)
Q Consensus 98 Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-~---~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (683)
++-++.+.++.+...++..++.++..... + ....+-+.+.+...+.. .++..++.|+..++....... .+
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~d~nk~--ki--- 163 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATFDSNKV--KI--- 163 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhccccchh--hh---
Confidence 44466788999999999999988765422 1 22334445566555544 677778888888776522211 00
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHh-
Q 005686 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE- 250 (683)
Q Consensus 174 ~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~- 250 (683)
.-..-+..+....++.+..+|..+..++..+...-. -...+ ..-++.|..++...+.+++..++.++..+.-
T Consensus 164 ---A~sGaL~pltrLakskdirvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 164 ---ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred ---hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh
Confidence 012234445667777888999999998877653211 01111 1235778888888899999999988877653
Q ss_pred -hCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhh-hhHHHHHhhcccChhhhhhhhhcc
Q 005686 251 -VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEE 328 (683)
Q Consensus 251 -~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~~~~~~ 328 (683)
...+.+...=+.+++.++..+.+.++.++..|--.+..++... +...+... .-+|.+++.++.+..
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt---~Yq~eiv~ag~lP~lv~Llqs~~~--------- 306 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT---EYQREIVEAGSLPLLVELLQSPMG--------- 306 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc---hhhhHHHhcCCchHHHHHHhCcch---------
Confidence 2233343333567888888999999999999999999987752 22222221 234555544432110
Q ss_pred cCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccc--h-hhhHHHHHHHHccCCCCC
Q 005686 329 DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI--L-PTLMPVIQAKLSASGDEA 405 (683)
Q Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~--~-~~l~~~l~~~l~~~~~~~ 405 (683)
..--+..-|+..++-+-+.+. . .-++..+...+.-.+ |
T Consensus 307 -------------------------------------plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d--n 347 (550)
T KOG4224|consen 307 -------------------------------------PLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD--N 347 (550)
T ss_pred -------------------------------------hHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC--c
Confidence 001122335555555544422 1 224444556665433 1
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHH-HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH--HHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLM 482 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~ 482 (683)
-+.+-.|...|..++...........+. .+|.+...+.|....||...-.|+++++-.- ..+.++ ..++|
T Consensus 348 EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-------~~k~~lld~gi~~ 420 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-------NDKEALLDSGIIP 420 (550)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-------ccHHHHhhcCCcc
Confidence 4577788888888887554443333332 6778888888988889888777777776422 123333 34678
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 483 GLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
.|+....+.+.+||..|+.||.++++..
T Consensus 421 iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 421 ILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred eeecccCccchhhcccHHHHHHhhhhhh
Confidence 8888888888999999999999998764
No 78
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.73 E-value=1e-05 Score=80.69 Aligned_cols=309 Identities=16% Similarity=0.110 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-CcCChHHHHHHHHHHhccCChhH
Q 005686 69 QAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINH 147 (683)
Q Consensus 69 ~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-~~~~~~~l~~~l~~~l~s~~~~~ 147 (683)
+.|.+++-+.+..-.. -+++.+.+++..|-..+++.-..|.-.+|+.+..++... +++.....+..|..++++.....
T Consensus 241 q~a~V~lvr~~~~ll~-~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~ 319 (898)
T COG5240 241 QLAGVLLVRATVELLK-ENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVL 319 (898)
T ss_pred chhheehHHHHHHHHH-hChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHH
Confidence 3444444444433221 246777888888888888887888888899998888776 66677778888888999999999
Q ss_pred HhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHH
Q 005686 148 MEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF 227 (683)
Q Consensus 148 r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~ 227 (683)
|..|+++|..++-..+.-.. ..=+.+-.+..|.+..+...|+..|..-. . ...+..+++.+.
T Consensus 320 rFsA~Riln~lam~~P~kv~------------vcN~evEsLIsd~Nr~IstyAITtLLKTG---t---~e~idrLv~~I~ 381 (898)
T COG5240 320 RFSAMRILNQLAMKYPQKVS------------VCNKEVESLISDENRTISTYAITTLLKTG---T---EETIDRLVNLIP 381 (898)
T ss_pred HHHHHHHHHHHHhhCCceee------------ecChhHHHHhhcccccchHHHHHHHHHcC---c---hhhHHHHHHHHH
Confidence 99999999999887775332 12234556677777666666665554322 1 122333344444
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhc-CCChHHHHHHhhHHHHhhcc-CCchhhHHhhhhh
Q 005686 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFEA-QLPHENLKEFLPR 305 (683)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~l~~ 305 (683)
....|-+...+.-+++++..+....|..-..+ +.++...+. ...-+.+.+++++++.+.+. |...+ .
T Consensus 382 sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-------r 450 (898)
T COG5240 382 SFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-------R 450 (898)
T ss_pred HHHHhhccCceEEeHHHHHHHHhhCcHHHHHH----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-------H
Confidence 44444444555566677777776666543333 333333322 23445667777777666655 11111 1
Q ss_pred hHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc
Q 005686 306 LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE 385 (683)
Q Consensus 306 l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~ 385 (683)
.+..+..++.+. .....+.+.|+.+++.-|..
T Consensus 451 aLe~LC~fIEDc------------------------------------------------ey~~I~vrIL~iLG~EgP~a 482 (898)
T COG5240 451 ALEVLCTFIEDC------------------------------------------------EYHQITVRILGILGREGPRA 482 (898)
T ss_pred HHHHHHHHHhhc------------------------------------------------chhHHHHHHHHHhcccCCCC
Confidence 122221111100 02234556666666665431
Q ss_pred chh-hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 005686 386 ILP-TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (683)
Q Consensus 386 ~~~-~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (683)
--| ..+.++...+-=++ -.+|.||+.||..++-...+.+.+ ..+...+..+++|.+..||..|..++..+
T Consensus 483 ~~P~~yvrhIyNR~iLEN---~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 483 KTPGKYVRHIYNRLILEN---NIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred CCcchHHHHHHHHHHHhh---hHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 111 22233322222233 678999999999888765433221 22445566788899999999998777655
No 79
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.66 E-value=0.0011 Score=70.51 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=135.3
Q ss_pred HHHHHHHHHhhcC--ccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChh
Q 005686 371 SAAALDVLSNVFG--DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPL 448 (683)
Q Consensus 371 a~~~l~~l~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~ 448 (683)
+..++..++.... .+.+..++......+.-. +....|.+|+.++..++. .+.+.+..+.++..+.+...+.+..
T Consensus 470 a~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~--~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~~s~e 545 (1005)
T KOG2274|consen 470 AFLTISKFSSSTVINPQLLQHFLNATVNALTMD--VPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASKSSDE 545 (1005)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhhccC--CCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHcccccHH
Confidence 3344444444422 233444444333333321 126778888888776662 3345677888899999988888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 005686 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (683)
Q Consensus 449 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~ 528 (683)
|-..-+.+|+..++.-+.+ +......+.+..-.++... ..+|.|...+-..+..++.. .....|+...+++.+++.
T Consensus 546 vl~llmE~Ls~vv~~dpef--~as~~skI~P~~i~lF~k~-s~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisi 621 (1005)
T KOG2274|consen 546 VLVLLMEALSSVVKLDPEF--AASMESKICPLTINLFLKY-SEDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISV 621 (1005)
T ss_pred HHHHHHHHHHHHhccChhh--hhhhhcchhHHHHHHHHHh-cCCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHH
Confidence 9999999999998876543 1122222323222333222 23567777777787777763 233447788888888888
Q ss_pred HHHhhH----hHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcchhhHHhHHHHHHHH
Q 005686 529 FGKYQR----RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQA 595 (683)
Q Consensus 529 l~~~~~----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 595 (683)
++...+ .....+++.|.++++..++.+.+ ..+...+|++.+..- .++++..+...-+|++.+...
T Consensus 622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~-~l~~~~FpaVak~tl-HsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPN-LLICYAFPAVAKITL-HSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HcCcccccCchhhHHHHHHHHHHHhcCCCCccH-HHHHHHhHHhHhhee-ecCChHHHHhHHHHHHHHHhc
Confidence 887653 33558899999999998877654 477778888877653 333334445566777766554
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.66 E-value=0.0018 Score=72.76 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=113.0
Q ss_pred HHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 005686 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (683)
Q Consensus 93 ~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (683)
...+.++..++++...+|..|..|++.|+..++. -.-+++-..+-.-+.++...+|++|+..+|..+-..++
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e------- 888 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE------- 888 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-------
Confidence 3445677788889999999999999999998743 34577777777778888899999999999988876654
Q ss_pred CCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhh
Q 005686 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (683)
Q Consensus 172 ~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (683)
...++...+.+...|+...||+.+++.+..++...|.. +.+..+.-.++...+|++..+.+.++++|..+.-.
T Consensus 889 -----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 889 -----LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred -----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 34677888899999999999999999999999876542 22333344455556777667999999999887543
No 81
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.00033 Score=73.33 Aligned_cols=521 Identities=12% Similarity=0.101 Sum_probs=279.9
Q ss_pred HHHHHHHHHHH-HhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHH
Q 005686 32 DKSQIWQQLQQ-YSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIR 110 (683)
Q Consensus 32 ~r~~A~~~L~~-~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr 110 (683)
.|+.|.+..-. +.-..+.-...-+++....+.+.+.+...=.++.+.- +.| |+......+.++.-..++++.+|
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa-~~~----P~~a~~avnt~~kD~~d~np~iR 103 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYA-KGK----PDLAILAVNTFLKDCEDPNPLIR 103 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhh-ccC----chHHHhhhhhhhccCCCCCHHHH
Confidence 66766665544 4444444333334443222556777877777776553 223 33444444566666678999999
Q ss_pred HHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc
Q 005686 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (683)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 190 (683)
..+.+..+.+- -+..|.-++..+..++++.++-+|..+..+...+...-++... -..+++.+...+.
T Consensus 104 ~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~----------~~gl~~~L~~ll~ 170 (734)
T KOG1061|consen 104 ALALRTMGCLR---VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE----------DSGLVDALKDLLS 170 (734)
T ss_pred HHHhhceeeEe---ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc----------ccchhHHHHHHhc
Confidence 87665555443 3467788899999999999999999999888887766555433 2567778888888
Q ss_pred CCCHHHHHHHHHHHHHHHhccch-hhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHH
Q 005686 191 SPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQ 269 (683)
Q Consensus 191 ~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~ 269 (683)
|.++.|-..|+.++..+.+.-+. ........++..++..+..-++=-+ +..|..+....++.- .-...+++.+..
T Consensus 171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~-~ea~~i~~r~~p 246 (734)
T KOG1061|consen 171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDS-REAEDICERLTP 246 (734)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCc-hhHHHHHHHhhh
Confidence 99999999999999999876543 2222223344555554433222112 223344444433322 223455665555
Q ss_pred hhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCC
Q 005686 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (683)
Q Consensus 270 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (683)
.+.+....+...+..++...... .......++.++-+.++..+....
T Consensus 247 ~Lqh~n~avvlsavKv~l~~~~~--~~~~~~~~~~K~~~pl~tlls~~~------------------------------- 293 (734)
T KOG1061|consen 247 RLQHANSAVVLSAVKVILQLVKY--LKQVNELLFKKVAPPLVTLLSSES------------------------------- 293 (734)
T ss_pred hhccCCcceEeehHHHHHHHHHH--HHHHHHHHHHHhcccceeeecccc-------------------------------
Confidence 56666666666666666555443 111122233333333333322111
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchh-hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhh
Q 005686 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP-TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY 428 (683)
Q Consensus 350 ~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~ 428 (683)
.....+..-+..+....++ ++. .+.-++.+ ..++ -.++..-+.++..++..
T Consensus 294 ----------------e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~k-ynDP----iYvK~eKleil~~la~~------ 345 (734)
T KOG1061|consen 294 ----------------EIQYVALRNINLILQKRPE-ILKVEIKVFFCK-YNDP----IYVKLEKLEILIELAND------ 345 (734)
T ss_pred ----------------hhhHHHHhhHHHHHHhChH-HHHhHhHeeeee-cCCc----hhhHHHHHHHHHHHhhH------
Confidence 1223344444444444443 111 11111111 1122 46677777777666652
Q ss_pred hhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 429 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
..+.+++.-+.....+-++..-..+++++|+++..... - ..++..++..+.-...-|...++..+..+.+
T Consensus 346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~---------~-~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ---------S-NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh---------h-hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 23445666666666666776667788999999875531 2 6778888888774444555666777777766
Q ss_pred HhcccchHHHHHHHHHHHHHHHHhhHhHHH-HHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcchhhHHh
Q 005686 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLR-IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLE 587 (683)
Q Consensus 509 ~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 587 (683)
.++... +.++..+...+..-++...+ +..-.+|.-+....+ ...++..+++.+. ++..++ -++
T Consensus 416 kyP~~~----~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-------a~elL~~f~en~~---dE~~~V--ql~ 479 (734)
T KOG1061|consen 416 KYPNKY----ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-------ALELLESFLENFK---DETAEV--QLE 479 (734)
T ss_pred cCCCch----hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-------HHHHHHHHHhhcc---cchHHH--HHH
Confidence 655332 33444444444443333333 344455544444332 2223333333332 223332 223
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchH-HhHHhhcCCc
Q 005686 588 CFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIE-SLVISLFPNL 666 (683)
Q Consensus 588 ~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~l~~i~p~l 666 (683)
.+....+.++..-. -....+..+ |.-.. ....++|+|+.++..+--+. -|...+ ..+..=.|.+
T Consensus 480 LLta~ik~Fl~~p~-~tq~~l~~v---L~~~~---------~d~~~~dlrDr~l~Y~RlLs--~~~~~a~~v~~~~kP~i 544 (734)
T KOG1061|consen 480 LLTAAIKLFLKKPT-ETQELLQGV---LPLAT---------ADTDNPDLRDRGLIYWRLLS--EDPLIAKDVVLAEKPLI 544 (734)
T ss_pred HHHHHHHHHhcCCc-cHHHHHHHH---Hhhhh---------ccccChhhhhhHHHHHHHhh--cCHHHHHHHHhcCCCcc
Confidence 34444444444211 233344433 33322 11246789999988887766 444333 3332223555
Q ss_pred cccCCCCcce
Q 005686 667 TWKSPKRKCI 676 (683)
Q Consensus 667 ~~~~~~~~~~ 676 (683)
.......+.+
T Consensus 545 s~~~~~~~p~ 554 (734)
T KOG1061|consen 545 SEETDSLDPT 554 (734)
T ss_pred ccCCCCCCch
Confidence 4443333333
No 82
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=6.1e-07 Score=84.17 Aligned_cols=377 Identities=16% Similarity=0.099 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhh
Q 005686 110 RSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (683)
Q Consensus 110 r~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 189 (683)
...++-..+.+...+-...-.+....++-.+++.++.+..++-..++.+.-..... +++ -.+..+=+.+.+..
T Consensus 64 qrsaalafAeitek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk------~li-v~l~Gl~~Li~qmm 136 (550)
T KOG4224|consen 64 QRSAALAFAEITEKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENK------GLI-VSLLGLDLLILQMM 136 (550)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCc------eEE-EeccChHHHHHHhc
Confidence 33444444555444322233445566777788888888888888888776544431 111 01233333344444
Q ss_pred cCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHH
Q 005686 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQ 269 (683)
Q Consensus 190 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~ 269 (683)
.+..++|..+++|+..++.+.+....-.-..-+..+..+.+..+..++..+...|..+...+...-.-.-..-+++++.
T Consensus 137 -td~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVs 215 (550)
T KOG4224|consen 137 -TDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVS 215 (550)
T ss_pred -CCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhh
Confidence 4456789999999999987633211110012234445555666777888888887766543321100000123456777
Q ss_pred hhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCC
Q 005686 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (683)
Q Consensus 270 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (683)
.++..+.+++.++...++.++-....++.+...-++++|.++..|-++.+
T Consensus 216 ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~------------------------------ 265 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD------------------------------ 265 (550)
T ss_pred hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh------------------------------
Confidence 88889999999999999888654334455555566788887766643322
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc--cc-hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhh
Q 005686 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426 (683)
Q Consensus 350 ~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~--~~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~ 426 (683)
.++--|..+|..++.-... ++ -..-+|.+.+.++++. -....+.+.|+..++-+-...
T Consensus 266 ----------------kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~---~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 266 ----------------KVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM---GPLILASVACIRNISIHPLNE 326 (550)
T ss_pred ----------------HHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc---hhHHHHHHHHHhhcccccCcc
Confidence 1233344555555443221 22 2245788888888887 777888888887665543211
Q ss_pred hhhhHHH-HHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHHHHHhccCCccHHHHHHHHH
Q 005686 427 LYPHLSE-IVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAF 503 (683)
Q Consensus 427 ~~~~~~~-l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al 503 (683)
. ...++ .+..++..|. ..+..++-.|..+|-.++...... ...+. ...+|.+...+.|....||+....++
T Consensus 327 ~-lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n-----~~~i~esgAi~kl~eL~lD~pvsvqseisac~ 400 (550)
T KOG4224|consen 327 V-LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN-----VSVIRESGAIPKLIELLLDGPVSVQSEISACI 400 (550)
T ss_pred c-ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh-----hHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence 0 11111 2334445554 345668888888888887633221 12222 45788888888898888888877777
Q ss_pred HHHHHHhcccchHHH--HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q 005686 504 ATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (683)
Q Consensus 504 ~~l~~~~~~~l~~~l--~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (683)
..+.- .+..+.++ ..|++.|+....+.+.+++..+..++.++...+
T Consensus 401 a~Lal--~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 401 AQLAL--NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHHh--ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 76642 22222222 235666666666655566667888888887654
No 83
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.00011 Score=74.99 Aligned_cols=297 Identities=18% Similarity=0.171 Sum_probs=168.3
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc---CCchh-
Q 005686 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QLPHE- 297 (683)
Q Consensus 222 ~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~---~~~~~- 297 (683)
....+....++.+..||..|++.+..+-+. ..+. +.+.....+.+.|.+++||..|+..+.-.... +...+
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccc--cccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 355577778889999999999999888772 2222 34555566778999999999998764443332 11100
Q ss_pred hHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 005686 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (683)
Q Consensus 298 ~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~ 377 (683)
.-....+..+..+-..+. +..|.+|-.|+.+|+.
T Consensus 274 ~e~kl~D~aF~~vC~~v~----------------------------------------------D~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVR----------------------------------------------DRSLSVRVEAAKALGE 307 (823)
T ss_pred hhhhhHHHHHHHHHHHHh----------------------------------------------cCceeeeehHHHHhch
Confidence 001112222222211111 1347788889888888
Q ss_pred HHhhcCccchhhhHHHHHHHHccCCCCChh---hHHHHHHHHHHHHhcc--h-----hhhhhhHHHHHH-----HHhhcc
Q 005686 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWK---DREAAVLALGAIAEGC--I-----KGLYPHLSEIVA-----FLIPLL 442 (683)
Q Consensus 378 l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---~r~aal~~l~~l~~~~--~-----~~~~~~~~~l~~-----~l~~~l 442 (683)
+.....+- +.+.+.+-+-+.. --|+ .|-..+..=|.++.|- . +.....-..++| .++..|
T Consensus 308 ~~~vSee~----i~QTLdKKlms~l-RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGl 382 (823)
T KOG2259|consen 308 FEQVSEEI----IQQTLDKKLMSRL-RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGL 382 (823)
T ss_pred HHHhHHHH----HHHHHHHHHhhhh-hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeec
Confidence 76655432 2233332222211 0022 2222333333222221 1 111111222333 477888
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 005686 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIIL 522 (683)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~ 522 (683)
.|+--.||.+|...++.++..- ..+-...+..|+.+++|....||..|..+|..+..... .=..+++.++
T Consensus 383 EDEf~EVR~AAV~Sl~~La~ss---------P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-i~eeql~~il 452 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATSS---------PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-IREEQLRQIL 452 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcCC---------CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-ecHHHHHHHH
Confidence 9999999999999999998643 34557778889999999889999999999999887631 1123455554
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhc
Q 005686 523 QHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALG 597 (683)
Q Consensus 523 ~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g 597 (683)
..+.+...+.+..+-+.|+. +. +.....+...+..+...+.+.+ .|++ .++.|++.|++.-+
T Consensus 453 ----~~L~D~s~dvRe~l~elL~~----~~--~~d~~~i~m~v~~lL~~L~kyP-qDrd--~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 453 ----ESLEDRSVDVREALRELLKN----AR--VSDLECIDMCVAHLLKNLGKYP-QDRD--EILRCMGRIGQNHR 514 (823)
T ss_pred ----HHHHhcCHHHHHHHHHHHHh----cC--CCcHHHHHHHHHHHHHHhhhCC-CCcH--HHHHHHHHHhccCh
Confidence 44555544444444444332 11 1112355555555666666654 2433 56677777665543
No 84
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.56 E-value=1.2e-07 Score=66.27 Aligned_cols=55 Identities=42% Similarity=0.664 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (683)
|.+|.+|+++||.++...++...++++++++.+...++|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999998888888999999999999999999999999999999975
No 85
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.49 E-value=4.8e-07 Score=75.93 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=89.5
Q ss_pred hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhh
Q 005686 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (683)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (683)
.+++.+.+.+.+++ |..|..++.+++.++...++.....+. .+++.+++.+.++++.++..|++++++++...+..
T Consensus 7 ~~i~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 7 GGLPALVSLLSSSD---ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred CChHHHHHHHHcCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 36777888888887 999999999999999876544444444 68899999999999999999999999998765321
Q ss_pred hCCCcchhhH-HHHHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 468 IGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 468 ~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
..... ..+++.+.+.+++.+..++..++++|.+++
T Consensus 84 -----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 -----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22223 347899999999888999999999999886
No 86
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.0009 Score=69.99 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhh--hhHHHHHHHHhhccC
Q 005686 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY--PHLSEIVAFLIPLLD 443 (683)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~ 443 (683)
...++..+++..+.+..++. -...+..+.+++.+. ..+.-+...+..++..++.... .|+ .++.+..-
T Consensus 407 e~K~aivd~Ii~iie~~pds-Ke~~L~~LCefIEDc-----e~~~i~~rILhlLG~EgP~a~~Pskyi----r~iyNRvi 476 (865)
T KOG1078|consen 407 EFKRAIVDAIIDIIEENPDS-KERGLEHLCEFIEDC-----EFTQIAVRILHLLGKEGPKAPNPSKYI----RFIYNRVI 476 (865)
T ss_pred hHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHhc-----cchHHHHHHHHHHhccCCCCCCcchhh----HHHhhhhh
Confidence 45667777777777766542 124455666666653 3466677777777776654332 233 33444443
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
=.+..||.+|..++.+|+.. .....+.+...+-+++.|.+..||..|..++..+-+..
T Consensus 477 LEn~ivRaaAv~alaKfg~~---------~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFGAQ---------DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred hhhhhhHHHHHHHHHHHhcC---------CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence 46788999999999999821 12333556666777888999999999999998887443
No 87
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.0047 Score=63.98 Aligned_cols=336 Identities=13% Similarity=0.112 Sum_probs=201.0
Q ss_pred HHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccC--ChhHHhHHHHHHHHHHhhchhccccCC
Q 005686 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDV 170 (683)
Q Consensus 93 ~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~--~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (683)
.+.+.+..=|.+.++.....+-++++.+...+.. ..+-+++-+++-|+ ..-+|+.+..||..+.+..++.+.
T Consensus 111 lvin~iknDL~srn~~fv~LAL~~I~niG~re~~---ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~--- 184 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNPTFVCLALHCIANIGSREMA---EAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN--- 184 (938)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHH---HHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC---
Confidence 3333444444456777777778888888766422 22333444555443 346899999999999998776543
Q ss_pred CCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHh
Q 005686 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (683)
Q Consensus 171 ~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (683)
.+...+.+...|.|.+-.|-.++...+..++...|+.+.--+...+..+.........+ +.+
T Consensus 185 -------~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~-----------~qd 246 (938)
T KOG1077|consen 185 -------PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTS-----------LQD 246 (938)
T ss_pred -------hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccc-----------hhh
Confidence 35778889999999998888899988888888887766544433333222211100000 011
Q ss_pred h-CccchhhhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcc
Q 005686 251 V-RPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEE 328 (683)
Q Consensus 251 ~-~~~~~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~ 328 (683)
. ++..=.|++. .++..+...-...|+.+|....+++..+......+-..+..
T Consensus 247 YTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~v-------------------------- 300 (938)
T KOG1077|consen 247 YTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKV-------------------------- 300 (938)
T ss_pred ceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccch--------------------------
Confidence 1 1111123443 23333322223345667777777666654431100000000
Q ss_pred cCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHH-HHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCCh
Q 005686 329 DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK-CSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAW 406 (683)
Q Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~-~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~ 406 (683)
.+.+... ...+++.-+...-++ +.+...+..+.+++++.+ .
T Consensus 301 ----------------------------------q~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE---~ 343 (938)
T KOG1077|consen 301 ----------------------------------QHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRE---T 343 (938)
T ss_pred ----------------------------------HhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccc---c
Confidence 0000111 112222222222222 556677777888888888 8
Q ss_pred hhHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHH
Q 005686 407 KDREAAVLALGAIAEGC--IKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (683)
Q Consensus 407 ~~r~aal~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 483 (683)
..|+-|+..+..++..- .+.+..| ...++..|+ +.+..||+.|+..|=.||.. .....++..
T Consensus 344 NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDLLY~mcD~-----------~Nak~IV~e 408 (938)
T KOG1077|consen 344 NIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDLLYAMCDV-----------SNAKQIVAE 408 (938)
T ss_pred cchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHHHHHHhch-----------hhHHHHHHH
Confidence 99999999888877653 2333444 455667787 78899999999998888753 334566677
Q ss_pred HHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005686 484 LLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (683)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~ 531 (683)
+++.+...++.+|+....-+.-+.+....+..=|++.+++. +...++
T Consensus 409 lLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqL-iriagd 455 (938)
T KOG1077|consen 409 LLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQL-IRIAGD 455 (938)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH-HHHhcc
Confidence 77777777889999888888888888877777788877764 444444
No 88
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.0033 Score=65.01 Aligned_cols=221 Identities=13% Similarity=0.126 Sum_probs=118.8
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc---CChHH
Q 005686 55 FILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGWLE 131 (683)
Q Consensus 55 ~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~---~~~~~ 131 (683)
.+|.+ .+..+.+|+.||..|-+..++.-+.+++.... +.++.+|.+.+-.|-.++...+..+++..++ ...+.
T Consensus 153 KlLvS-~~~~~~vkqkaALclL~L~r~spDl~~~~~W~---~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~ 228 (938)
T KOG1077|consen 153 KLLVS-GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWA---QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL 228 (938)
T ss_pred HHHhC-CcchHHHHHHHHHHHHHHHhcCccccChhhHH---HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH
Confidence 44553 26678899999999988887754444443333 3566677766666666666666666665432 22222
Q ss_pred HHHHHHHHhcc-------------CChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC----C-
Q 005686 132 LLQALVTCLDS-------------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP----H- 193 (683)
Q Consensus 132 l~~~l~~~l~s-------------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~----~- 193 (683)
-+..+...... +.|-.....+++|..+ +..-.+.. ...+..++..++...+++ +
T Consensus 229 avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~----p~~~D~~~----r~~l~evl~~iLnk~~~~~~~k~v 300 (938)
T KOG1077|consen 229 AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY----PTPEDPST----RARLNEVLERILNKAQEPPKSKKV 300 (938)
T ss_pred HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC----CCCCCchH----HHHHHHHHHHHHhccccCccccch
Confidence 22233222211 1122233333333222 21111100 012344555555555431 1
Q ss_pred --HHHHHHH-HHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc--cchhhhHHHHHHHHH
Q 005686 194 --TSLRKLS-LGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--SFLEPHLRNLFEYML 268 (683)
Q Consensus 194 --~~vr~~a-~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~l~~~~~ 268 (683)
.....+. +.++.-.+-..++ .+.+...+..|.+++.+.+.++|-.+++.+..++.... +.++.|...|+.
T Consensus 301 q~~na~naVLFeaI~l~~h~D~e--~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~--- 375 (938)
T KOG1077|consen 301 QHSNAKNAVLFEAISLAIHLDSE--PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIIN--- 375 (938)
T ss_pred HhhhhHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHH---
Confidence 1122232 2333333322221 12234457777777788888889999998888887644 334555444433
Q ss_pred Hhhc-CCChHHHHHHhhHHHHhhccC
Q 005686 269 QVNK-DTDDDVALEACEFWHSYFEAQ 293 (683)
Q Consensus 269 ~~~~-~~~~~vr~~a~~~l~~l~~~~ 293 (683)
.++ ..|-++|+.|++.|..+|..+
T Consensus 376 -sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 376 -SLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred -HhccccchHHHHHHHHHHHHHhchh
Confidence 454 567788999999998888763
No 89
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.37 E-value=8.3e-07 Score=77.69 Aligned_cols=135 Identities=21% Similarity=0.339 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcccc----C----CCCCCcchh
Q 005686 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS----D----VPGLAECPI 178 (683)
Q Consensus 107 ~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~----~----~~~~~~~~~ 178 (683)
+.||++++.+++.|+..++|..||++++.+.+.+++ ++.....++.+|..+.+++...... + +...+....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999987 5788889999999999888752110 0 000011224
Q ss_pred HhhHHHHHHhhcCCC----HHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 005686 179 NIFLPRLLQFFQSPH----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~----~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l 245 (683)
+.+++.+.+.+.... ..+...+++|+.+++.+.+...... ..+++.+++.++++ ..+..|++||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 455555555555432 7899999999999999887554433 23688888888654 4477888775
No 90
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.33 E-value=0.0053 Score=66.30 Aligned_cols=470 Identities=14% Similarity=0.118 Sum_probs=229.6
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHH
Q 005686 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (683)
Q Consensus 13 ~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~ 92 (683)
.+..+-+.++..+. +.. .+-++...+-++.++|+-...|.. | ......|-+.++..|.+ +.+.--
T Consensus 121 ~~~~~d~yiE~lYe-~~~-ek~~~~~~il~La~~~~NL~~l~~----n--------e~l~~aL~RvLred~~k-s~~l~t 185 (708)
T PF05804_consen 121 SINDLDEYIELLYE-DIP-EKIRGTSLILQLARNPENLEELVQ----N--------ETLMSALARVLREDWKK-SVELAT 185 (708)
T ss_pred CHHHHHHHHHHHhc-ccH-HHHHHHHHHHHHhCCcchHHHHHH----h--------HHHHHHHHHHHHHHhhh-hHHHHH
Confidence 46677778887775 455 677788888999998987765443 2 13345567777888887 333333
Q ss_pred HHHHHHhhhhhc--C--ChHHHHHHHHHHHHHHhhcC--cCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc
Q 005686 93 YIKSELLPCLGA--A--DRHIRSTVGTIVSVVVQLGG--IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (683)
Q Consensus 93 ~i~~~Ll~~l~~--~--~~~vr~~~~~~l~~i~~~~~--~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~ 166 (683)
.|.. ++-+++. . .--.+..++.+.-.++..+- ...|.+=+......... .+ ..
T Consensus 186 nI~~-iF~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~-~~------------------~~- 244 (708)
T PF05804_consen 186 NIIY-IFFCFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEE-KP------------------EA- 244 (708)
T ss_pred HHHH-HHHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-ch------------------hh-
Confidence 3332 2223321 1 11223444444444444431 12343322222111110 00 00
Q ss_pred ccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 005686 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (683)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 246 (683)
. +........+...+...+.-+| .++..|..+.+...-...-.-..+++.|...++..+.++...+..+|.
T Consensus 245 ~--------~~~~~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLk 315 (708)
T PF05804_consen 245 K--------KDYEKELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLK 315 (708)
T ss_pred h--------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 0012223334444444444444 556667777655332211112356777888887777887777777777
Q ss_pred HHHhhC--ccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhh
Q 005686 247 LLIEVR--PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (683)
Q Consensus 247 ~l~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~ 324 (683)
.+.-.. ...+. -..+++-+.+.+..++.+++..++.++.+++..+..
T Consensus 316 kLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~----------------------------- 364 (708)
T PF05804_consen 316 KLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL----------------------------- 364 (708)
T ss_pred HHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH-----------------------------
Confidence 765321 11111 124555566666777777888888888887654111
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCC
Q 005686 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (683)
Q Consensus 325 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 404 (683)
|..... ..++|.+..++.+++
T Consensus 365 -------------------------------------------R~~mV~--------------~GlIPkLv~LL~d~~-- 385 (708)
T PF05804_consen 365 -------------------------------------------RSQMVS--------------LGLIPKLVELLKDPN-- 385 (708)
T ss_pred -------------------------------------------HHHHHH--------------CCCcHHHHHHhCCCc--
Confidence 111000 024444445554432
Q ss_pred ChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhcc-CCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHH
Q 005686 405 AWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVL 481 (683)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l 481 (683)
.|..++..|..++..-. +.+..+ .+.+|.+...+ ..+.+.+...++..+-.++..-... +... ...+
T Consensus 386 ---~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna------qlm~~g~gL 455 (708)
T PF05804_consen 386 ---FREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA------QLMCEGNGL 455 (708)
T ss_pred ---hHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH------HHHHhcCcH
Confidence 34455555655554221 111111 12445544443 2345555554545544444322210 1111 1223
Q ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCch
Q 005686 482 MGLLKRILDTNKRVQEAACSAFATLEEEAA---EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQP 558 (683)
Q Consensus 482 ~~l~~~l~d~~~~v~~~a~~al~~l~~~~~---~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 558 (683)
+.|++........ ...+.+.++...-+ ..+.+|+..+ ...+...+ .-...++|+|.++.-.-++..-.
T Consensus 456 ~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~~~i~~L----~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~ 526 (708)
T PF05804_consen 456 QSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFVDFIGDL----AKIVSSGD--SEEFVVECLGILANLTIPDLDWA 526 (708)
T ss_pred HHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHHHHHHHH----HHHhhcCC--cHHHHHHHHHHHHhcccCCcCHH
Confidence 3343332221111 12334444443322 2234444444 44454432 33477888888877653433222
Q ss_pred hHHH--hhhHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhccccccchH--HHHHHHHHHHHHHHHHhhCCcccCCCCCc
Q 005686 559 VYLD--ILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQ--PVFQRCINIIQTQQLAKVDSVAAGAQYDK 634 (683)
Q Consensus 559 ~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~f~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 634 (683)
.++. .++|.+.+.+..-..++.-+..++-.+|.++. .+..++.+. .+++.++.+|.... .|.
T Consensus 527 ~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kq------------eDd 592 (708)
T PF05804_consen 527 QLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQ------------EDD 592 (708)
T ss_pred HHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhC------------chH
Confidence 3554 47777777765332222222444445554442 334444443 57888888887643 356
Q ss_pred hHHHHHHHHHHHHHHH
Q 005686 635 EFVVCCLDLLSGLAEG 650 (683)
Q Consensus 635 ~~~~~a~~~l~~l~~~ 650 (683)
+++...+.+|..+...
T Consensus 593 E~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 593 EIVLQILYVFYQLLFH 608 (708)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 7888888888887744
No 91
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.32 E-value=9e-05 Score=72.67 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHH-HHhhCccchhhhHHHHHHHHHHhhcC-CChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHH
Q 005686 232 DPSAEVRKLVCAAFNL-LIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (683)
Q Consensus 232 ~~~~~~~~~~~~~l~~-l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~ 309 (683)
+...+-++.++.-|.. +++.....-..|...|+..+++.+.+ .++..+..|+..|..++++ .+..+..+..-.+.-
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~--Q~~~l~DstE~ai~K 375 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN--QPARLFDSTEIAICK 375 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh--chHhhhchHHHHHHH
Confidence 3334556666664444 44554455567888899989999887 6788899999999999987 333444443333333
Q ss_pred HHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhh
Q 005686 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT 389 (683)
Q Consensus 310 l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 389 (683)
++..-.++.+ -..|.++..|+..++.+.|..-+..
T Consensus 376 ~Leaa~ds~~---------------------------------------------~v~~~Aeed~~~~las~~P~~~I~~ 410 (516)
T KOG2956|consen 376 VLEAAKDSQD---------------------------------------------EVMRVAEEDCLTTLASHLPLQCIVN 410 (516)
T ss_pred HHHHHhCCch---------------------------------------------hHHHHHHHHHHHHHHhhCchhHHHH
Confidence 3222221110 1367778888888888888754445
Q ss_pred hHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhh
Q 005686 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (683)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (683)
+.|.+.. .+ ...-.+++..+..+.+... +.+.+.++++.|.+++..++.+..||++|++||-.+...++..
T Consensus 411 i~~~Ilt----~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~- 482 (516)
T KOG2956|consen 411 ISPLILT----AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME- 482 (516)
T ss_pred HhhHHhc----Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH-
Confidence 5554443 44 4555667779999998874 5677889999999999999999999999999999998877622
Q ss_pred CCCcchhhHHHHHHH
Q 005686 469 GHQNGREQFEKVLMG 483 (683)
Q Consensus 469 ~~~~~~~~~~~~l~~ 483 (683)
.+.+|+.++-..
T Consensus 483 ---~mePhL~~Lt~s 494 (516)
T KOG2956|consen 483 ---EMEPHLEQLTSS 494 (516)
T ss_pred ---hhhhHhhhccHH
Confidence 466776655433
No 92
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0033 Score=65.94 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=64.2
Q ss_pred hhhcC---ChHHHHHHHHHHHHHHhhc--CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCc
Q 005686 101 CLGAA---DRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (683)
Q Consensus 101 ~l~~~---~~~vr~~~~~~l~~i~~~~--~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (683)
.++++ ....|+.+..++..|...+ +..+-.+++-.+.+++++.+...|+....++..+..-..+
T Consensus 29 ~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised----------- 97 (865)
T KOG1078|consen 29 TFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED----------- 97 (865)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-----------
Confidence 55553 2344555666666665543 4566788899999999999998888887777655443222
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 005686 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 176 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (683)
+-.+...+.+-.+..+...|..|++.|..++..
T Consensus 98 --viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~ 130 (865)
T KOG1078|consen 98 --VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDG 130 (865)
T ss_pred --hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCc
Confidence 123344555555556778899999998887643
No 93
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.29 E-value=0.00044 Score=69.20 Aligned_cols=216 Identities=13% Similarity=0.182 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCC----C-CHHHHHHHHHHHHHHHhhC--ccch--hhhHHHHH
Q 005686 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND----P-SAEVRKLVCAAFNLLIEVR--PSFL--EPHLRNLF 264 (683)
Q Consensus 194 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~-~~~~~~~~~~~l~~l~~~~--~~~~--~~~l~~l~ 264 (683)
..++..+++++..+++...+.+.++++.++..+++++.. . ...+...+++.|..+++.. ...+ .+++..|+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 367888899998888777777778888888888876642 1 2235556777777666532 1222 46777666
Q ss_pred HHHH-Hh----------------------hcC-CChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhh
Q 005686 265 EYML-QV----------------------NKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (683)
Q Consensus 265 ~~~~-~~----------------------~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d 320 (683)
+-++ -. +.. .....|..|.+++..+++. ..+.+.+.+...+..++.....
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~--~~~~v~~i~~~~i~~~l~~y~~---- 263 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK--FEKQVTSILMQYIQQLLQQYAS---- 263 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhh----
Confidence 5321 11 111 1234578899999999876 3344444444433333321110
Q ss_pred hhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc------c------chh
Q 005686 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------E------ILP 388 (683)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~------~------~~~ 388 (683)
++..+|..+..|...++.++..... . +.+
T Consensus 264 ---------------------------------------~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 264 ---------------------------------------NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp ----------------------------------------TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred ---------------------------------------CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 0223577778888888888765511 1 111
Q ss_pred hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHH
Q 005686 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (683)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (683)
.+...+..-++...+..+-.|..|+..+..+-...+ .+.+..++|.+++.|.+++..|+.-|+.++
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 111222222221112227788899998888877654 357788999999999999999999888764
No 94
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.0024 Score=62.96 Aligned_cols=505 Identities=11% Similarity=0.118 Sum_probs=257.2
Q ss_pred CCCHHHHHHHHHHHHHHHH--------HhhccCCHhHHHHHHHH-HhhhhhcCChHHHHHHHHHHHHHHhhc--------
Q 005686 62 GKSVEIRQAAGLLLKNNLR--------TAYKSMSPSNQQYIKSE-LLPCLGAADRHIRSTVGTIVSVVVQLG-------- 124 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~--------~~w~~l~~~~~~~i~~~-Ll~~l~~~~~~vr~~~~~~l~~i~~~~-------- 124 (683)
+....+|+.|..++-..++ ..|..+-|+.-+.=-.. ++-.|+++++..|..+-++++.|....
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4456788888888766653 35665433332211122 333677889999988888888776431
Q ss_pred --CcCChHH-----------HHHHHHHHh-ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc
Q 005686 125 --GIAGWLE-----------LLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (683)
Q Consensus 125 --~~~~~~~-----------l~~~l~~~l-~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 190 (683)
++..+.. +-..++..+ ....+.+.-..+.||..++...+..--. -..+-+++..+..+++
T Consensus 87 ~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~------~~~~~~~~~~ik~~i~ 160 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLK------LSLLTKVWNQIKPYIR 160 (728)
T ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHH------HHHHHHHHHHHHHHhh
Confidence 2222211 112222222 2234455566778888888776653110 1235677778888899
Q ss_pred CCCHHHHHHHHHHHHHHHhcc---chhh-------------HHhH--HHHHHHHHh------------------------
Q 005686 191 SPHTSLRKLSLGSVNQFIMLM---PSAL-------------FVSM--DQYLQGLFL------------------------ 228 (683)
Q Consensus 191 ~~~~~vr~~a~~~l~~~~~~~---~~~~-------------~~~~--~~~l~~l~~------------------------ 228 (683)
+.++.||..++..++.++..- |+.- .++. ++..+.+..
T Consensus 161 ~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~ 240 (728)
T KOG4535|consen 161 HKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRL 240 (728)
T ss_pred cCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeee
Confidence 999999999999999887542 1100 0000 011111110
Q ss_pred --------------------hhCC--CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHH
Q 005686 229 --------------------LSND--PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (683)
Q Consensus 229 --------------------~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l 286 (683)
.+.. .-..+|-+++++|..++... .....|.-.+...+-..+.+.++.+...+..++
T Consensus 241 ~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll 319 (728)
T KOG4535|consen 241 CISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMTQAYLMELGRVICKCMGEADPSIQLHGAKLL 319 (728)
T ss_pred eeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCCChHHHHHHHHHH
Confidence 0000 00234555555555444332 223345555555555556666777776666655
Q ss_pred HHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCC-cccccccCCCCCCCCCCCccccccc
Q 005686 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK-PRFHSSRLHGSENPEDDDDDIVNVW 365 (683)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~dd~~~~~~~ 365 (683)
..+... . +. +....+ | +.+..+ |++......+.++..- +....
T Consensus 320 ~~lg~~--l---v~-----------~~~P~~------~----------k~~~q~~~fw~~~l~~p~~~~~Y----Ds~~~ 363 (728)
T KOG4535|consen 320 EELGTG--L---IQ-----------QYKPDS------T----------KAPDQRAPFWTMMLNGPLPRALY----DSEHP 363 (728)
T ss_pred HHHHHH--H---hh-----------hcCCCc------c----------cchhhhccHHHHHccCCChhhhh----hhcCC
Confidence 554332 0 00 000000 0 000000 0110000000010000 11122
Q ss_pred cHHHHHHHHHHHHHhhc----CccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhh
Q 005686 366 NLRKCSAAALDVLSNVF----GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIP 440 (683)
Q Consensus 366 ~~r~~a~~~l~~l~~~~----~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~ 440 (683)
+..-+....+..|+..- ++. -....+.+..... +.++.-+|.+|+.+++.+.-+-. ....-+.......++.
T Consensus 364 Tl~~s~Cdals~i~~~~f~~lpn~-~~T~~~~Fl~GC~--d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~ 440 (728)
T KOG4535|consen 364 TLQASACDALSSILPEAFSNLPND-RQTLCITFLLGCN--DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILM 440 (728)
T ss_pred CchhHHHHHHhhcCchhhcCCCCc-chhhhHHHHhccc--chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHH
Confidence 34444444444443221 210 1123333333332 22336688888888876554322 2223456667788888
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHHhhhCCC--cchhhHHHHHHHHHHHhc--c-CCccHHHHHHHHHHHHHHHhcccch
Q 005686 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQ--NGREQFEKVLMGLLKRIL--D-TNKRVQEAACSAFATLEEEAAEELA 515 (683)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~~~~~~~l~~l~~~l~--d-~~~~v~~~a~~al~~l~~~~~~~l~ 515 (683)
.+.|..-.+|..++|++|.+...+...+... ....+.-..+..+...-. + .+.+|+..|..+|+++.+.......
T Consensus 441 sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~ 520 (728)
T KOG4535|consen 441 SLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEK 520 (728)
T ss_pred HhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhh
Confidence 9999999999999999999998765321100 112233333343333222 2 2578999999999999887655444
Q ss_pred HHHHHHHHHHHHHHHHh-----hHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHH
Q 005686 516 PRLEIILQHLMMAFGKY-----QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECF 589 (683)
Q Consensus 516 ~~l~~i~~~L~~~l~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l 589 (683)
+-+..+++.=+..+... ..+++-.+.-++|++...=.-.+-+.++...++|.+...+.... +..+ .++...+
T Consensus 521 ~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~--NFKVRi~AA~aL 598 (728)
T KOG4535|consen 521 PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK--NFKVRIRAAAAL 598 (728)
T ss_pred ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc--cceEeehhhhhh
Confidence 44555554433333221 23455688889999987532222233688888888887776543 2222 2333333
Q ss_pred HHHHHHhccccccchHHHHHHHHHHHH
Q 005686 590 TSIAQALGAGFTQFAQPVFQRCINIIQ 616 (683)
Q Consensus 590 ~~l~~~~g~~f~~~~~~~~~~l~~~l~ 616 (683)
...++ ..+|....+-.+..++.+|.
T Consensus 599 ~vp~~--re~~~d~~~Lsw~~lv~aLi 623 (728)
T KOG4535|consen 599 SVPGK--REQYGDQYALSWNALVTALQ 623 (728)
T ss_pred cCCCC--cccchhHHhHHHHHHHHHHH
Confidence 33222 12444444444555554444
No 95
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.28 E-value=9.3e-05 Score=72.58 Aligned_cols=189 Identities=14% Similarity=0.092 Sum_probs=133.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhc-CChHHHHHHHHHHHHHHhhcCc---CChHHHHHHHH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALV 137 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~-~~~~vr~~~~~~l~~i~~~~~~---~~~~~l~~~l~ 137 (683)
+...+-|..|..-|...+...-..+=++....|...+++.|.+ .+..+|..+-++|..+++..+. +.-...+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 3455667777765665554321111134677888889999987 6788888888999999886532 23333466666
Q ss_pred HHhccCChhHHhHHHHHHH-HHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc-hhh
Q 005686 138 TCLDSNDINHMEGAMDALS-KICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SAL 215 (683)
Q Consensus 138 ~~l~s~~~~~r~~al~~l~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~-~~~ 215 (683)
+...+.+..+...|-+++. .+....+. ..+..+.|.++. .+.....++++++..+++.++ +.+
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~-----------~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL 442 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPL-----------QCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL 442 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCch-----------hHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence 6666666655555554443 33343332 224555555554 666778899999999998887 457
Q ss_pred HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHH
Q 005686 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFE 265 (683)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~ 265 (683)
.+.++.++|.+++..++.+..||+.++-||..++..-+ +.++||+..+-.
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 77888999999999999999999999999999998887 889999875533
No 96
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.23 E-value=5.2e-05 Score=68.04 Aligned_cols=133 Identities=18% Similarity=0.317 Sum_probs=102.0
Q ss_pred ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHH
Q 005686 144 DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYL 223 (683)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l 223 (683)
++.+|..++.+++.++..++.. ++..+|.+...|.|+++.||..|+.++..++....-... ..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~------------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL------------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH------------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhh
Confidence 4678999999999999988753 567889999999999999999999999999854211111 2334
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHhh-CccchhhhHHHHHHHHHHhhc-----CCChHHHHHHhhHHHHhhc
Q 005686 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFE 291 (683)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~l~~~~~~~~~-----~~~~~vr~~a~~~l~~l~~ 291 (683)
..+...+.|+++++|..|..+|..+... .+..+..++++++..+-.... ..+.+-|...+.++.....
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 5666677899999999999999999987 777777777777765544433 2455667777888777655
No 97
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.21 E-value=0.00021 Score=64.08 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHH
Q 005686 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (683)
Q Consensus 106 ~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l 185 (683)
++.||..+..+++.++... ++.....++.+..++.|+++.+|..++.++..+...-.- +.-+.++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----------k~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----------KVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----------eehhhhhHHH
Confidence 4789999999999998775 455566789999999999999999999999998864221 1124566778
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhc-cchhhHHhHHHHHHHHHhhhCC-----CCHHHHHHHHHHHHHHHh
Q 005686 186 LQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIE 250 (683)
Q Consensus 186 ~~~l~~~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~l~~l~~ 250 (683)
+..+.|++++||..|..++..+... .|..+.+.+.+++..+-....+ .+.+-|..++..+...+.
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999866 5666666665555555443221 234556666666665555
No 98
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.014 Score=62.23 Aligned_cols=436 Identities=14% Similarity=0.154 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCC-----hhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhH
Q 005686 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-----INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (683)
Q Consensus 108 ~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~-----~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~ 182 (683)
.-|+.++..+-..-...+.+-..-++..+-+.+.+++ +..-++.+.++..+.+..+... ...+
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~------------~~~i 506 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE------------STWI 506 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch------------hHHH
Confidence 3466666655555544444445556777777777665 5566777778877777776532 3457
Q ss_pred HHHHHhhcC-----CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh
Q 005686 183 PRLLQFFQS-----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 183 ~~l~~~l~~-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
|.+++.... .++..-..+...++.+..+..+.- .+++..++.|++.+.++ +.-..+...+.++++.++..+.
T Consensus 507 ~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~ 583 (982)
T KOG2022|consen 507 PRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLD 583 (982)
T ss_pred HHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCc
Confidence 777776544 477788888888888887753221 12344567777776543 3335666779999999999999
Q ss_pred hhHHHHHHHHHHhhcCC--ChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccC-hhhhhhhhhcccCCCCC
Q 005686 258 PHLRNLFEYMLQVNKDT--DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA-DDDESLVEAEEDESLPD 334 (683)
Q Consensus 258 ~~l~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~-~~d~~~~~~~~~e~~~~ 334 (683)
||...++..+...+... .+..|...+..++.+.+.. .++....|+.+++..++..+... ..+++.
T Consensus 584 py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~pEe~~kyl~~lin~il~qle~~l~~~i~~----------- 651 (982)
T KOG2022|consen 584 PYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-KPEEIPKYLMKLINPILSQLEINLAPGIDD----------- 651 (982)
T ss_pred hHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-cHHhHHHHHHHHHHHHHHHHHHhhcCCCCC-----------
Confidence 99999999887775432 3556777888888776552 24556667777766665433211 000000
Q ss_pred ccCCCCcccccccCCCCCCCCCCCccccccccHHHHH-HHHHHHHHhhc----------------------Cc-cchhhh
Q 005686 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS-AAALDVLSNVF----------------------GD-EILPTL 390 (683)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a-~~~l~~l~~~~----------------------~~-~~~~~l 390 (683)
.++ ..|.+. ..++..+...+ +- ++...+
T Consensus 652 ~e~----------------------------~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~ 703 (982)
T KOG2022|consen 652 QEN----------------------------HLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKA 703 (982)
T ss_pred HHH----------------------------HHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHH
Confidence 000 000000 11112222111 00 223455
Q ss_pred HHHHHHHHcc--CCCCChhhHHHHHHHHHHHHhcchhhh-hhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHH--
Q 005686 391 MPVIQAKLSA--SGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV-- 465 (683)
Q Consensus 391 ~~~l~~~l~~--~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-- 465 (683)
+|.+.+.++- .+ ..+-+++|.....=.......+ .++++++++++......+.. +...++.-+-.++
T Consensus 704 i~~~~kv~s~~~~~---s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a-----~tl~l~~~~l~~~~~ 775 (982)
T KOG2022|consen 704 IPVFEKVLSMWLGL---SDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLA-----VTLSLIAACLLAKST 775 (982)
T ss_pred HHHHHHHHHHHhcc---hhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHH-----HHHHHHHHHHHhhhc
Confidence 6666555542 22 4566777766654333333445 68889999998884433221 1111111111111
Q ss_pred -hhhCCCcchhhHHHHHHHHHHHhcc----CCccHHHHHHHHHHHHHHHhcccch---HHHHHHHH-HHHHHHHHhhHhH
Q 005686 466 -QDIGHQNGREQFEKVLMGLLKRILD----TNKRVQEAACSAFATLEEEAAEELA---PRLEIILQ-HLMMAFGKYQRRN 536 (683)
Q Consensus 466 -~~~~~~~~~~~~~~~l~~l~~~l~d----~~~~v~~~a~~al~~l~~~~~~~l~---~~l~~i~~-~L~~~l~~~~~~~ 536 (683)
.... ......+...+...+....+ +++.+-..-...+..+++.-+.-+. +.+..++. .-...++.+....
T Consensus 776 ~~~~~-~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~ 854 (982)
T KOG2022|consen 776 VEQCK-PLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTT 854 (982)
T ss_pred ccccc-ccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHH
Confidence 1000 01122233333333333333 2456666666677777666554333 33444433 5566677666666
Q ss_pred HHHHHHHHHHHHHHhccccCc--hhHHHhhhHHHH-HHHhcCCCCCcchhhHHhHHHHHHHHhccccccchHHHHH
Q 005686 537 LRIVYDAIGTLADAVGFELNQ--PVYLDILMPPLI-AKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQ 609 (683)
Q Consensus 537 ~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~f~~~~~~~~~ 609 (683)
.+++..-+..++...+++... ...+..+=+.++ ..+........+ ..+++++.|..++.+.|..-...++.
T Consensus 855 i~aa~qF~t~~~~~~~s~~~~tv~~~V~~~G~~Li~~im~~vgg~~~R--S~ld~~aDIL~al~~k~~se~r~wl~ 928 (982)
T KOG2022|consen 855 IRAASQFLTALATYATSHDLVTVTSVVAEIGPILIYAIMRGVGGEASR--STLDALADILLALNAKFFSETRTWLK 928 (982)
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHHHHHHHHhcCcCcc--chhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 667777777776665543210 011121222222 222222211111 45666666666666555443333333
No 99
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.00092 Score=62.51 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=116.5
Q ss_pred HHHHHHHHHhhc-CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC
Q 005686 113 VGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (683)
Q Consensus 113 ~~~~l~~i~~~~-~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 191 (683)
...++..+.+.. +..-.|+++|.+...+..++..++..++..++.+.+.+...-..++. .-.-..+++.++.++..
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseil---lvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEIL---LVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHH---HHhhhhHHHHHHHHHcC
Confidence 567777777764 45667999999999999999999999999999999988754322110 01135788999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccchhhHHhHH-HHHH--HHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhh-HHHHHHHH
Q 005686 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQ--GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH-LRNLFEYM 267 (683)
Q Consensus 192 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~l~--~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~l~~~~ 267 (683)
.+.+|..+|.+.+..+..+ |..+...++ +++. .+.++...-+.-+|..+++.+..+.+..+...... -..++..+
T Consensus 140 eddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred CcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 9999999999999988654 222111111 0000 01111111234466777777777777666543211 12466666
Q ss_pred HHhhcC-CChHHHHHHhhHHHHhhcc
Q 005686 268 LQVNKD-TDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 268 ~~~~~~-~~~~vr~~a~~~l~~l~~~ 292 (683)
..-++. .|.-|+..+++....+++.
T Consensus 219 eaElkGteDtLVianciElvteLaet 244 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAET 244 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHH
Confidence 656665 4556788899998888775
No 100
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.18 E-value=2.4e-06 Score=59.67 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 005686 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (683)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l 506 (683)
|.||..|+++||.+++..+.. ..++.+.+++.|...++|+++.||..|++||+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~-----~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL-----LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH-----HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 679999999999988766553 5789999999999999999999999999999864
No 101
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.16 E-value=0.0011 Score=64.89 Aligned_cols=210 Identities=20% Similarity=0.156 Sum_probs=139.8
Q ss_pred hhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCC
Q 005686 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (683)
Q Consensus 270 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (683)
.+.+.....|..+++.+..+.......+.+......++..+.+.+..+..+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~----------------------------- 101 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSE----------------------------- 101 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHH-----------------------------
Confidence 344556778999999988877664455666666777778777776543211
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcC--c---cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch
Q 005686 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG--D---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (683)
Q Consensus 350 ~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~--~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~ 424 (683)
-+..|..++..++-.+| . +++..+.|.+.+.+.+. ......|.+++.+|+.++-...
T Consensus 102 -----------------E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~-s~~~~~R~~~~~aLai~~fv~~ 163 (309)
T PF05004_consen 102 -----------------EQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDS-SASPKARAACLEALAICTFVGG 163 (309)
T ss_pred -----------------HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHHHHHhhc
Confidence 14457788888887766 2 67888899999988865 2337788899989887655432
Q ss_pred h---hhh---hhHHHHHHHHhhccCC--------CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhcc
Q 005686 425 K---GLY---PHLSEIVAFLIPLLDD--------KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (683)
Q Consensus 425 ~---~~~---~~~~~l~~~l~~~l~d--------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d 490 (683)
. ... +.++.++......... +++.|..+|+.+-+-+...++.. .....+...++.|...|..
T Consensus 164 ~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~----~~~~~~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 164 SDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDS----KLEDLLEEALPALSELLDS 239 (309)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHhcC
Confidence 2 222 2333333332222211 23678888888888887766542 2456778899999999999
Q ss_pred CCccHHHHHHHHHHHHHHHhcc---c-chHHHHHHHHHHHHHHH
Q 005686 491 TNKRVQEAACSAFATLEEEAAE---E-LAPRLEIILQHLMMAFG 530 (683)
Q Consensus 491 ~~~~v~~~a~~al~~l~~~~~~---~-l~~~l~~i~~~L~~~l~ 530 (683)
++..||.+|..+|.-+.+.... . ..+..+.+++.+..+..
T Consensus 240 ~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 240 DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELAT 283 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 8999999999999988877642 2 23445555555444443
No 102
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.017 Score=60.90 Aligned_cols=215 Identities=12% Similarity=0.097 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhh-----hcCChHHHHHHHHHHHHHH-----hhcCcCCh--HH
Q 005686 64 SVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-----GAADRHIRSTVGTIVSVVV-----QLGGIAGW--LE 131 (683)
Q Consensus 64 ~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l-----~~~~~~vr~~~~~~l~~i~-----~~~~~~~~--~~ 131 (683)
.-.+|=.|=.+++.....+-..+.|.....+.+. .+.. .+-+.-+++-+...--.++ ....-+.| ..
T Consensus 410 ey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a-~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~ 488 (978)
T KOG1993|consen 410 EYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSA-QELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEA 488 (978)
T ss_pred eeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHH-HhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh
Confidence 4467777766666665554444555555554332 1211 1123344444332222222 22223456 34
Q ss_pred HHHHHHHHhccCCh-hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC-CHHHHHHHHHHHHHHHh
Q 005686 132 LLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 132 l~~~l~~~l~s~~~-~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~vr~~a~~~l~~~~~ 209 (683)
++|.+. ...++. -.|+.....++.-+.. .... ..-..+...+++++++. |-.||.++.+++...++
T Consensus 489 llpEl~--~~~~~~RiiRRRVa~ilg~Wvsv---q~~~-------e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vD 556 (978)
T KOG1993|consen 489 LLPELA--NDHGNSRIIRRRVAWILGQWVSV---QQKL-------ELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVD 556 (978)
T ss_pred hCHHhh--hcccchhHHHHHHHHHHhhhhhe---echH-------hHHHHHHHHHHHhcCccccceeehHHHHHHHHhhh
Confidence 555555 222222 3566666777776651 1111 11244555677888887 77899999999998885
Q ss_pred c---cchhhHHhHHHHHHHHHhhhCC-CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHh---hcCCChHHHHHH
Q 005686 210 L---MPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV---NKDTDDDVALEA 282 (683)
Q Consensus 210 ~---~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~vr~~a 282 (683)
. .++.+.++++++...+++++.. .+-+.|..++..+..+++...+.+.||...+++++-.. .+ .++-.|.+.
T Consensus 557 D~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~al 635 (978)
T KOG1993|consen 557 DWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCAL 635 (978)
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHH
Confidence 4 4567778887777777776543 34467788999999999999999999988776665433 33 455567777
Q ss_pred hhHHHHhhcc
Q 005686 283 CEFWHSYFEA 292 (683)
Q Consensus 283 ~~~l~~l~~~ 292 (683)
+..+.++...
T Consensus 636 L~~L~~lV~a 645 (978)
T KOG1993|consen 636 LATLRNLVNA 645 (978)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 103
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.14 E-value=1.5e-05 Score=62.28 Aligned_cols=86 Identities=29% Similarity=0.458 Sum_probs=66.3
Q ss_pred HHHHHHHH-ccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhC
Q 005686 391 MPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (683)
Q Consensus 391 ~~~l~~~l-~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (683)
+|.+.+.+ ++++ |.+|..++.+++.+.. ++.++.+...++|+++.||..|+++||++..
T Consensus 1 i~~L~~~l~~~~~---~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPD---PQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSS---HHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCC---HHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 35566667 6777 9999999999983321 3568888888999999999999999999852
Q ss_pred CCcchhhHHHHHHHHHHHhccC-CccHHHHHHHHHH
Q 005686 470 HQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFA 504 (683)
Q Consensus 470 ~~~~~~~~~~~l~~l~~~l~d~-~~~v~~~a~~al~ 504 (683)
+..++.|.+.+.++ +..||..|..+|+
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34567777777765 4567999999875
No 104
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.12 E-value=0.017 Score=59.79 Aligned_cols=140 Identities=11% Similarity=0.020 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMG 483 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~ 483 (683)
-..+.||+.++..++.....- ....-.+++..+++.+.|++..|..++..++..+.-.+++. ...++ ...+..
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-----kskfl~~ngId~ 465 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-----KSKFLRNNGIDI 465 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-----HHHHHHcCcHHH
Confidence 567889999988777654210 11222345667777778999999999988888887655432 22333 457788
Q ss_pred HHHHhccCCccHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005686 484 LLKRILDTNKRVQEAACSAFATLEEEAAE--ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (683)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~~--~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (683)
+.+++.+.++.+|..+.++|..+.-.+.+ ...++-.-..+.+...++++++.+++.++..+-++.-.
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 88888899999999999999998877754 34566666677788888888888888888888877654
No 105
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.05 E-value=0.017 Score=60.21 Aligned_cols=187 Identities=13% Similarity=0.132 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~ 141 (683)
..+...+..|++++-+ .|... |+..+.-.+.++.+..+++..||.++...|..+++.. +...+.+...|.++++
T Consensus 33 kg~~k~K~Laaq~I~k----ffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPK----FFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQ 106 (556)
T ss_dssp GS-HHHHHHHHHHHHH----HHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHH----HHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHh
Confidence 4578899999988754 45443 5567777788899999999999999999999999864 4566889999999999
Q ss_pred cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhh-H--Hh
Q 005686 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-F--VS 218 (683)
Q Consensus 142 s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~-~--~~ 218 (683)
+.++..+...=.+|..+.+..+.. .+..++..+... ..++..+|..+++.+..-+..++..+ . ..
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k~-----------tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E 174 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPKG-----------TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKE 174 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HHH-----------HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HH
T ss_pred cccHHHHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHH
Confidence 988877777767777766654431 123333333321 24677899999999876655444332 2 23
Q ss_pred HHHH-HHHHHhhhCCCCHHHHHHHHHHHHHHHhhCcc----chhhhHHHHHHHHHHh
Q 005686 219 MDQY-LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS----FLEPHLRNLFEYMLQV 270 (683)
Q Consensus 219 ~~~~-l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~l~~l~~~~~~~ 270 (683)
++.+ +..+.+.+.|-. ..=+..+..+...... .-.+....+++++...
T Consensus 175 ~e~~i~~~ikkvL~DVT----aeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQ 227 (556)
T PF05918_consen 175 MEEFIVDEIKKVLQDVT----AEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQ 227 (556)
T ss_dssp HHHHHHHHHHHHCTT------HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc----HHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHH
Confidence 3333 344445565422 2223344444443332 1123445677766644
No 106
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.05 E-value=0.00071 Score=73.63 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=152.5
Q ss_pred cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 005686 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (683)
++++.+-+.+...+.+.+ |+.|..|+..+....+.-. +....+...+...+-..+.|.|..|-..|+.+|..++..
T Consensus 249 di~~ki~~~l~t~~~s~~---WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKK---WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhcChHHHHhhhccc---hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 566677788888888888 9999999999988777654 223455666666777778899999999999999999998
Q ss_pred HHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 005686 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (683)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~ 543 (683)
+... ...|...++|.++..+.+..+.++..+..++..++.. -.+..+.+.+...+.+.+......+...
T Consensus 326 lr~~-----~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~ 394 (815)
T KOG1820|consen 326 LRPL-----FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLL 394 (815)
T ss_pred cchh-----hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 8753 6788899999999999998899999999998888772 2334444445556666655555567777
Q ss_pred HHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhcc-ccccchHHHHH
Q 005686 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQ 609 (683)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~-~f~~~~~~~~~ 609 (683)
++......++......-...+.|.++.. .++.+.++ ..+.++++.+.+++|. .|..|+..+.+
T Consensus 395 l~r~~~~~~~~~~~~~t~~~l~p~~~~~---~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 395 LDRKLRKLGPKTVEKETVKTLVPHLIKH---INDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred HHHHHhhcCCcCcchhhHHHHhHHHhhh---ccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 7777777663322113466677766553 33445555 4688999999999998 45556655554
No 107
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0012 Score=69.80 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCC
Q 005686 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 446 (683)
+.-.+.+.+..++..+++.++|.+.+.-.+.-.... ...|.-.--++..++...++-+..|...++...+....|++
T Consensus 784 vyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~---~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 784 VYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQ---TDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred eeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCC---ccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCch
Confidence 344577777788888888766665553332221221 33344344777777777777777888889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHHHhcccchHHHHHH----
Q 005686 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLEII---- 521 (683)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i---- 521 (683)
...|..++..+|.++...... ...++..++..++.... |.++.||.+|+..+..+....+..+.|.+...
T Consensus 861 ~~~RaSS~a~lg~Lcq~~a~~-----vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl 935 (982)
T KOG4653|consen 861 HEFRASSLANLGQLCQLLAFQ-----VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDL 935 (982)
T ss_pred HHHHHhHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 999999999999999876542 34577777777777665 66789999999999999999998888855433
Q ss_pred HHHHHHHHHHhhHhHHH-HHHHHHHHHHHHhc
Q 005686 522 LQHLMMAFGKYQRRNLR-IVYDAIGTLADAVG 552 (683)
Q Consensus 522 ~~~L~~~l~~~~~~~~~-~~~~~l~~l~~~~~ 552 (683)
...+.+......++..+ .+..|+..+-.++.
T Consensus 936 ~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 936 DETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333332 45555555544444
No 108
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.023 Score=59.64 Aligned_cols=107 Identities=20% Similarity=0.133 Sum_probs=66.3
Q ss_pred cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc-------CCCChhHHHHHHHHH
Q 005686 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL-------DDKFPLIRSISCWTL 457 (683)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-------~d~~~~vr~~a~~~l 457 (683)
.++..+.--+...+++++ ..+|.-++...-.++..- .+.+++..+...+ .|.+..-|..-..++
T Consensus 313 ~il~~l~mDvLrvLss~d---ldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLikti 383 (948)
T KOG1058|consen 313 KILQGLIMDVLRVLSSPD---LDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTI 383 (948)
T ss_pred HHHHHHHHHHHHHcCccc---ccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHH
Confidence 445555555567788888 889988887665555432 2233333333333 244566677777777
Q ss_pred HHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Q 005686 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (683)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (683)
...+..+ ..+-..+++.+++.+.|.++......+..+...++.
T Consensus 384 h~cav~F---------p~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek 426 (948)
T KOG1058|consen 384 HACAVKF---------PEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEK 426 (948)
T ss_pred HHHhhcC---------hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 7666544 456688999999999998765544444444444443
No 109
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.032 Score=58.55 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=79.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH-HhcCCChHHHHHHHhhh-ccCCCHHHHHHHHHHHHHHHHHhhccCCH---h
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSMSP---S 89 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~-~~~~p~~~~~l~~il~~-~~~~~~~~R~~a~~~l~~~i~~~w~~l~~---~ 89 (683)
.++.+.|+ +++.+ ++-.|.+.+-. +.+...+...+..++.= -...+-++ |+.+--.|+-++. +
T Consensus 23 ~~ik~~Le---k~~~~-~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~el--------KKLly~ywE~vPKt~~d 90 (948)
T KOG1058|consen 23 DEIKEKLE---KGDDE-VKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHEL--------KKLLYYYWELVPKTDSD 90 (948)
T ss_pred HHHHHHHh---cCChH-HHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHH--------HHHHHHHHHHccccCCC
Confidence 56777777 46666 77777766544 55544444444444320 01333333 4444455654321 1
Q ss_pred --H-HH--HHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 005686 90 --N-QQ--YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (683)
Q Consensus 90 --~-~~--~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 163 (683)
. .+ -+-+.+-.=|..++.-||...- .-+++...+.-...++|.+.+++.....-+|..|+.++..+.+...
T Consensus 91 gkl~~EMILvcna~RkDLQHPNEyiRG~TL---RFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~ 166 (948)
T KOG1058|consen 91 GKLLHEMILVCNAYRKDLQHPNEYIRGSTL---RFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE 166 (948)
T ss_pred cccHHHHHHHHHHHhhhccCchHhhcchhh---hhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh
Confidence 1 11 1222233344568888986644 4444444455667789999999999999999999999999888643
No 110
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.98 E-value=7.1e-05 Score=62.57 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=89.2
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
.++++.+.+.+.++++.+|..++.++..++...|+.....+. .+++.+.+.+.++++.++..++.+|..++...+....
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 347888999999999999999999999998775544443343 6788888888888999999999999999987654333
Q ss_pred hhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhc
Q 005686 258 PHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (683)
Q Consensus 258 ~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 291 (683)
.... .+++.+.+.+.+.+.+++..++.++.++++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 3332 467777778888888999999999888763
No 111
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.013 Score=62.12 Aligned_cols=171 Identities=14% Similarity=0.237 Sum_probs=105.1
Q ss_pred HHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC-CHHHHHHHHHHHHHHHh
Q 005686 132 LLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 132 l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~vr~~a~~~l~~~~~ 209 (683)
=+..|++.++.. ++.. .++++..+|+.+.-.-...+.+ -.++.++|.+...+++. +.++...|++|+..+++
T Consensus 168 k~kkLL~gL~~~~Des~---Qleal~Elce~L~mgnEesLs~---fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQ---QLEALTELCEMLSMGNEESLSG---FPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred HHHHHHHhccccCChHH---HHHHHHHHHHHHhhcchhhhcc---ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 355666666654 6544 3444555555433211111111 24789999999999984 78999999999999999
Q ss_pred ccchhhHHhHH-HHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCccchhh--hHHH---HHHHHHHhhcCCChHHHHHH
Q 005686 210 LMPSALFVSMD-QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEP--HLRN---LFEYMLQVNKDTDDDVALEA 282 (683)
Q Consensus 210 ~~~~~~~~~~~-~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~--~l~~---l~~~~~~~~~~~~~~vr~~a 282 (683)
.+|....-.+. ..+|.|+..+. -..-++.+.++++|..+....+..+-. .+.. .++++ .-.+++.|
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF-------Si~aQR~A 314 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF-------SIHAQRVA 314 (1051)
T ss_pred hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH-------HHHHHHHH
Confidence 99976543322 23555554332 345689999999999998887754422 1111 22222 12356778
Q ss_pred hhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccC
Q 005686 283 CEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (683)
Q Consensus 283 ~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 317 (683)
+..-.++|.. .+..--.++-..+|.|.+.+++-
T Consensus 315 laiaaN~Cks--i~sd~f~~v~ealPlL~~lLs~~ 347 (1051)
T KOG0168|consen 315 LAIAANCCKS--IRSDEFHFVMEALPLLTPLLSYQ 347 (1051)
T ss_pred HHHHHHHHhc--CCCccchHHHHHHHHHHHHHhhc
Confidence 8888888876 21112234556677777776653
No 112
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0017 Score=68.76 Aligned_cols=218 Identities=16% Similarity=0.116 Sum_probs=148.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~ 141 (683)
+..+.+|-.|...+++.+.++. .-+-.....+....+..+.+.++-|--.+...+..++..++....|.+...-...-+
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~ 816 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKK 816 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 3445789999999999998773 333345567777888889999888877888888888887655444444443333222
Q ss_pred cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHH
Q 005686 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ 221 (683)
Q Consensus 142 s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 221 (683)
...++.|...-+++..++...++... .+...+...++.+..+|+...|..++..++.++........+.+-+
T Consensus 817 k~~~d~~lkVGEai~k~~qa~Gel~~--------~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 817 KLQTDYRLKVGEAILKVAQALGELVF--------KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred CCCccceehHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 23234455444888888888776543 3456788889999999999999999999999987655434444555
Q ss_pred HHHHHHhhh-CCCCHHHHHHHHHHHHHHHhhCccchhh----hHHHHHHHHHHhh-cCCChHHHHHHhhHHHH
Q 005686 222 YLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEP----HLRNLFEYMLQVN-KDTDDDVALEACEFWHS 288 (683)
Q Consensus 222 ~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~----~l~~l~~~~~~~~-~~~~~~vr~~a~~~l~~ 288 (683)
.+..+.... .|++.-+|.+|+..+..+....+..+.| |+.+....+.... .+.++.++..|..++..
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 555555543 3677889999999999998877766655 3344444444443 44555566666555443
No 113
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.019 Score=61.06 Aligned_cols=187 Identities=18% Similarity=0.122 Sum_probs=124.5
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhh-ccCCHhHHHHHHHHHhhhhhc-CChHHHHHHHHHHHHHHhhcCc--
Q 005686 51 NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY-KSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGI-- 126 (683)
Q Consensus 51 ~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w-~~l~~~~~~~i~~~Ll~~l~~-~~~~vr~~~~~~l~~i~~~~~~-- 126 (683)
..|+.-|.. +.++.....|++-|...+...- ..++.--.+.+...|..+|.. .+..|...+|+++..++...++
T Consensus 170 kkLL~gL~~--~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 170 KKLLQGLQA--ESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHhccc--cCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 345555543 4588888888888887774321 223333346677788888875 4899999999999999988643
Q ss_pred ------CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHH
Q 005686 127 ------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLS 200 (683)
Q Consensus 127 ------~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a 200 (683)
+..|-++..|+. =+--++-+.++.+|..+.+..+..+-.. ..+..++. .+.++ +..++..|
T Consensus 248 a~vV~~~aIPvl~~kL~~---IeyiDvAEQ~LqALE~iSR~H~~AiL~A------G~l~a~Ls-ylDFF---Si~aQR~A 314 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLT---IEYIDVAEQSLQALEKISRRHPKAILQA------GALSAVLS-YLDFF---SIHAQRVA 314 (1051)
T ss_pred heeecccchHHHHHhhhh---hhhhHHHHHHHHHHHHHHhhccHHHHhc------ccHHHHHH-HHHHH---HHHHHHHH
Confidence 233444444322 1233566778999998888777643210 01122111 22333 45678888
Q ss_pred HHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhC
Q 005686 201 LGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (683)
Q Consensus 201 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 252 (683)
+-+...++..++.+-..++.+.+|.|..+++..+.+..+.++-|+..+++..
T Consensus 315 laiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 315 LAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 8888888887765555556677899999888888888899999999998754
No 114
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.061 Score=59.64 Aligned_cols=176 Identities=16% Similarity=0.205 Sum_probs=117.1
Q ss_pred cC-ccchhhhHHHHHHHHccCC-CCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC-CCChhHHHHHHHHHH
Q 005686 382 FG-DEILPTLMPVIQAKLSASG-DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLS 458 (683)
Q Consensus 382 ~~-~~~~~~l~~~l~~~l~~~~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~ 458 (683)
+| +.++..+.|++.+..+.+. ..++..+.||..+++.+.--..+....+ +|.++..+. +++|.||..++.++|
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~----l~llftimeksp~p~IRsN~Vvalg 986 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH----LPLLFTIMEKSPSPRIRSNLVVALG 986 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHhcCCCceeeecchhecc
Confidence 47 4788889999988886531 1228899999999999876554433334 456666665 799999999999999
Q ss_pred HHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHH--------------HHH
Q 005686 459 RFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEII--------------LQH 524 (683)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i--------------~~~ 524 (683)
.++-.++ ..+++.-+.++..+.|.++.||..|...|+.++-+-.-.++.|+..+ .+.
T Consensus 987 Dlav~fp---------nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 987 DLAVRFP---------NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred chhhhcc---------cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence 9987654 45677888899999999999999999999998865433333333333 222
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhc
Q 005686 525 LMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (683)
Q Consensus 525 L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 574 (683)
..+-+.+ +. ..++..+-.++...++.-...+-+..+|..+++.+++
T Consensus 1058 FF~Els~---k~-n~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikk 1103 (1251)
T KOG0414|consen 1058 FFKELSS---KG-NTIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKK 1103 (1251)
T ss_pred HHHHhhh---cc-cchhhhchHHHHhhccCcccchhhHHHHHHHHHHhcc
Confidence 2221111 11 2345555555555543321123566788888776654
No 115
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.03 Score=55.98 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=92.4
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhh-Cc
Q 005686 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEV-RP 253 (683)
Q Consensus 176 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~-~~ 253 (683)
..+..++..+.+-..||+..+|..|+.+++...+..|.....+...++..++..+. +.+.+|.-+++.+|..+.+. ..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 34677777888888999999999999999999999998887777777777766544 45678888999998887764 34
Q ss_pred cchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 254 ~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
.-+.+|+..+.--+.....+.++++|..|+..++.++..
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 556777776666666677888899999999988887655
No 116
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.90 E-value=0.0038 Score=63.45 Aligned_cols=209 Identities=14% Similarity=-0.022 Sum_probs=127.6
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH
Q 005686 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (683)
Q Consensus 181 i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 260 (683)
.+..++..+.++++.||..+.++|+.+-. +...+.|...+.++++.+|..++..+...-. .
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---~------ 147 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG----------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH---D------ 147 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---C------
Confidence 36778888999998999999999875421 2235556666678888888877766554111 1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCC
Q 005686 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (683)
Q Consensus 261 ~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~ 340 (683)
-.+.+...+++.++.||..|+..++.+..... .+.+...+.+
T Consensus 148 --~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a------------~~~L~~al~d------------------------ 189 (410)
T TIGR02270 148 --PGPALEAALTHEDALVRAAALRALGELPRRLS------------ESTLRLYLRD------------------------ 189 (410)
T ss_pred --hHHHHHHHhcCCCHHHHHHHHHHHHhhccccc------------hHHHHHHHcC------------------------
Confidence 11233345668889999999998888755311 1111111111
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHH
Q 005686 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (683)
Q Consensus 341 ~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~ 420 (683)
. +..+|..|...+..+ |. +...+.+......+. +..+......++...
T Consensus 190 -------------~---------~~~VR~aA~~al~~l----G~---~~A~~~l~~~~~~~g---~~~~~~l~~~lal~~ 237 (410)
T TIGR02270 190 -------------S---------DPEVRFAALEAGLLA----GS---RLAWGVCRRFQVLEG---GPHRQRLLVLLAVAG 237 (410)
T ss_pred -------------C---------CHHHHHHHHHHHHHc----CC---HhHHHHHHHHHhccC---ccHHHHHHHHHHhCC
Confidence 0 114888888777554 22 123334444344444 555555444443331
Q ss_pred hcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHH
Q 005686 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (683)
Q Consensus 421 ~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~ 500 (683)
. +..++.+...++++. +|..+++++|++.. ...++.|+..+.|+ .++..|.
T Consensus 238 --~--------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~---------------p~av~~L~~~l~d~--~~aR~A~ 288 (410)
T TIGR02270 238 --G--------PDAQAWLRELLQAAA--TRREALRAVGLVGD---------------VEAAPWCLEAMREP--PWARLAG 288 (410)
T ss_pred --c--------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC---------------cchHHHHHHHhcCc--HHHHHHH
Confidence 1 145677777777755 89999999998753 23456666666654 3888888
Q ss_pred HHHHHHH
Q 005686 501 SAFATLE 507 (683)
Q Consensus 501 ~al~~l~ 507 (683)
.++..+.
T Consensus 289 eA~~~It 295 (410)
T TIGR02270 289 EAFSLIT 295 (410)
T ss_pred HHHHHhh
Confidence 8888764
No 117
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.90 E-value=0.0038 Score=67.37 Aligned_cols=332 Identities=17% Similarity=0.230 Sum_probs=182.4
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCCh-----HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCC
Q 005686 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (683)
Q Consensus 96 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~-----~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (683)
..|..+|.+.+..+.-.+..++..+.-.. ..+ .++++.|.+++.+++...+..++.+|..+.-...- +..
T Consensus 293 ~~Lv~~Ldr~n~ellil~v~fLkkLSi~~--ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~--R~~- 367 (708)
T PF05804_consen 293 SLLVKCLDRENEELLILAVTFLKKLSIFK--ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL--RSQ- 367 (708)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH--HHH-
Confidence 34444554455555555555555554321 122 23578899999998888999999999887654322 111
Q ss_pred CCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc-hhhHHhHHHHHHHHHhhh-CCCCHHHHHHHHHHHHHH
Q 005686 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLL 248 (683)
Q Consensus 171 ~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~l~~l 248 (683)
-.-.+++|.+...+.+++ .+..++++|+.+...-. .....+ ...++.+...+ ..+++.+...++..+..+
T Consensus 368 -----mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNL 439 (708)
T PF05804_consen 368 -----MVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINL 439 (708)
T ss_pred -----HHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHH
Confidence 112468889999998764 55667888887764321 111111 12345444432 234455544444444444
Q ss_pred HhhC--ccchh--hhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccC-CchhhHHhhhhhhHHHHHhhcccChhhhhh
Q 005686 249 IEVR--PSFLE--PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (683)
Q Consensus 249 ~~~~--~~~~~--~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~-~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 323 (683)
+... ...+. ..++.++.. ..+..+ ...+.++.+++.++ .....+.+|+..++..+ ...++
T Consensus 440 a~~~rnaqlm~~g~gL~~L~~r---a~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v----~~~~~---- 504 (708)
T PF05804_consen 440 ALNKRNAQLMCEGNGLQSLMKR---ALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDLAKIV----SSGDS---- 504 (708)
T ss_pred hcCHHHHHHHHhcCcHHHHHHH---HHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh----hcCCc----
Confidence 3321 11111 122333332 233333 23446777887774 23333444444444332 21110
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc-Cc----cchh--hhHHHHHH
Q 005686 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-GD----EILP--TLMPVIQA 396 (683)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~-~~----~~~~--~l~~~l~~ 396 (683)
.....+|++.++... ++ .++. .++|++..
T Consensus 505 --------------------------------------------ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~ 540 (708)
T PF05804_consen 505 --------------------------------------------EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKD 540 (708)
T ss_pred --------------------------------------------HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHH
Confidence 123667888877764 22 2332 68899998
Q ss_pred HHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH--HHHHHHhhccC---CCChhHHHHHHHHHHHHHHHHHhhhCCC
Q 005686 397 KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQ 471 (683)
Q Consensus 397 ~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 471 (683)
.+..+.. .......++..+|.++... .....+. .+++.++..|+ +++..| -..++++.++..+-..
T Consensus 541 ~L~~g~~-~dDl~LE~Vi~~gtla~d~--~~A~lL~~sgli~~Li~LL~~kqeDdE~V-lQil~~f~~ll~h~~t----- 611 (708)
T PF05804_consen 541 LLKPGAS-EDDLLLEVVILLGTLASDP--ECAPLLAKSGLIPTLIELLNAKQEDDEIV-LQILYVFYQLLFHEET----- 611 (708)
T ss_pred HhCCCCC-ChHHHHHHHHHHHHHHCCH--HHHHHHHhCChHHHHHHHHHhhCchHHHH-HHHHHHHHHHHcChHH-----
Confidence 8875421 1456667778888777532 1222222 34555555554 333333 3456777777665321
Q ss_pred cchhhH---HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 472 NGREQF---EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 472 ~~~~~~---~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
..++ ..+...++..++|.|+.||..|-.+|.-+.+..
T Consensus 612 --r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 612 --REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred --HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 1222 457788899999999999999888888776543
No 118
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.86 E-value=0.082 Score=58.98 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhh-----hc-----CChHHHHHHHHHHHHHHhhcCcCChHH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-----GA-----ADRHIRSTVGTIVSVVVQLGGIAGWLE 131 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l-----~~-----~~~~vr~~~~~~l~~i~~~~~~~~~~~ 131 (683)
+..-++|+-+++.++..+..+...++-+..+++.-.++..+ ++ --..||.+.+++++.+.+........+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~ 167 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKE 167 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHH
Confidence 66789999999999999999888877766666655555433 22 134799999999999999887777788
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc
Q 005686 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 132 l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (683)
.+..+.+.+..++++.|.+++..+.+......+.+ ....+.+++.+.+++.|.+..||..|.+.+..+....
T Consensus 168 ~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l--------~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 168 TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL--------FQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 88889999988899999999999877766222221 1346788889999999999999999999887776554
Q ss_pred chhhHHhHHHHHHHHHh
Q 005686 212 PSALFVSMDQYLQGLFL 228 (683)
Q Consensus 212 ~~~~~~~~~~~l~~l~~ 228 (683)
+......+..++..++.
T Consensus 240 v~l~~~~i~~lv~~l~~ 256 (1549)
T KOG0392|consen 240 VKLMVQKIAKLVHTLWS 256 (1549)
T ss_pred HhhhHhHHHHHHHHHHH
Confidence 33333334444444443
No 119
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.067 Score=57.78 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=116.6
Q ss_pred CCCHHHHHHHHHHH-HHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcC
Q 005686 27 PSSTADKSQIWQQL-QQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA 105 (683)
Q Consensus 27 ~~~~~~r~~A~~~L-~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~ 105 (683)
.+.. .|..|.+.+ .++....+.-..+.+++..-.+.+.+.|...=.++.+. ....|+..--..+.+..-+.++
T Consensus 31 ~n~~-~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~y-----ak~~P~~~lLavNti~kDl~d~ 104 (757)
T COG5096 31 SNDY-KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERY-----AKLKPELALLAVNTIQKDLQDP 104 (757)
T ss_pred cChH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHhhccCC
Confidence 3444 566666654 55776666555555666532356778777766666543 2344555555667777788899
Q ss_pred ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHH
Q 005686 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (683)
Q Consensus 106 ~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l 185 (683)
++.+|..+-+.++.+-. +.-|+.+++.+.++++++++.+|..|..++..+.+.-+....+ ......+
T Consensus 105 N~~iR~~AlR~ls~l~~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~----------~g~~~~l 171 (757)
T COG5096 105 NEEIRGFALRTLSLLRV---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE----------LGLIDIL 171 (757)
T ss_pred CHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc----------ccHHHHH
Confidence 99999887777766643 4578999999999999999999999999999988765543321 1134445
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhc
Q 005686 186 LQFFQSPHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 186 ~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (683)
...+.|++|.|...|+.++..+...
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 172 KELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHhchh
Confidence 5667899999999999998877643
No 120
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.07 Score=57.64 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=118.8
Q ss_pred hhcCChHHH-HHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHh
Q 005686 102 LGAADRHIR-STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (683)
Q Consensus 102 l~~~~~~vr-~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (683)
+.+.+...| .++-.+++.+... ...+.+++.+.+.+.+.|...++....=+....+..+.. .--
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G---~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~------------~lL 92 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG---EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL------------ALL 92 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH------------HHH
Confidence 334334333 3444555555543 348999999999999888888887776666666665532 233
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH
Q 005686 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (683)
Q Consensus 181 i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 260 (683)
.++.+.+-++|+++.+|..|++.++.+-. ...+..+++.+.+.+.|+++.||+.|.-++..+-+..++.+...
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~- 165 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL- 165 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc-
Confidence 46678888999999999999999987631 23455668888889999999999999999999887766554322
Q ss_pred HHHHHHHHHhhcCCChHHHHHHhhHHHHhhc
Q 005686 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (683)
Q Consensus 261 ~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 291 (683)
..+......+.+.++.|...|+-.+..+..
T Consensus 166 -g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 166 -GLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred -cHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 133333445678899999999877776644
No 121
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0011 Score=65.78 Aligned_cols=156 Identities=18% Similarity=0.148 Sum_probs=120.9
Q ss_pred HHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcch
Q 005686 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (683)
Q Consensus 395 ~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (683)
.+..++..+..|..|......++.+.....-.-.+.+..++-.+.+...|++..+|..|+..|++..+.++. ...
T Consensus 220 ~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~-----kv~ 294 (533)
T KOG2032|consen 220 AQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD-----KVR 294 (533)
T ss_pred hhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH-----HHH
Confidence 333443333338888888777777665332112356677788888889999999999999999999988654 466
Q ss_pred hhHHHHHHHHHHHhccC-CccHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhc
Q 005686 475 EQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (683)
Q Consensus 475 ~~~~~~l~~l~~~l~d~-~~~v~~~a~~al~~l~~~~-~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (683)
.+...++..++..|-|+ +..|.-.+..+|..+.+.. ...+.+|+-++--.+..++.+.+++.+..++..++.++.-+|
T Consensus 295 th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 295 THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 77888888888888765 5789999999999988876 568899999999999999988887877788888898888777
Q ss_pred ccc
Q 005686 553 FEL 555 (683)
Q Consensus 553 ~~~ 555 (683)
..-
T Consensus 375 ~~~ 377 (533)
T KOG2032|consen 375 GGW 377 (533)
T ss_pred CCc
Confidence 554
No 122
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.79 E-value=0.0011 Score=72.14 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=148.8
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhH
Q 005686 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (683)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 299 (683)
.+-+.+...+.++++.-|..+++.+...++... .....+...+..++-....|.+-.+...|..++..++.. .+..+
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~--lr~~~ 330 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK--LRPLF 330 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh--cchhh
Confidence 344556666678899999999999999988766 344445555555555557788888899999999999887 45557
Q ss_pred HhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 005686 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (683)
Q Consensus 300 ~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~ 379 (683)
.+|...++|.++..+.+.. ..+|.++..+++.++
T Consensus 331 ~~~~~~v~p~lld~lkekk----------------------------------------------~~l~d~l~~~~d~~~ 364 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKK----------------------------------------------SELRDALLKALDAIL 364 (815)
T ss_pred HHHHHhhcchHHHHhhhcc----------------------------------------------HHHHHHHHHHHHHHH
Confidence 8888888888877765322 137788888888887
Q ss_pred hhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh--hhhhhHHHHHHHHhhccCCCChhHHHHHHHHH
Q 005686 380 NVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK--GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (683)
Q Consensus 380 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (683)
...+ +..+.+.+.+.+++.+ +..|..+...+......... .....+..++|.++...+|.+..||.+|..++
T Consensus 365 ns~~---l~~~~~~I~e~lk~kn---p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~ 438 (815)
T KOG1820|consen 365 NSTP---LSKMSEAILEALKGKN---PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAV 438 (815)
T ss_pred hccc---HHHHHHHHHHHhcCCC---hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence 7444 4477888888999888 99999999999888776642 22456788999999999999999999999999
Q ss_pred HHHHHHHHh
Q 005686 458 SRFSKFIVQ 466 (683)
Q Consensus 458 ~~l~~~~~~ 466 (683)
+.+.+.++.
T Consensus 439 ~~v~k~~Ge 447 (815)
T KOG1820|consen 439 AAVMKVHGE 447 (815)
T ss_pred HHHHHHhhH
Confidence 999887754
No 123
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.074 Score=56.02 Aligned_cols=468 Identities=15% Similarity=0.167 Sum_probs=249.5
Q ss_pred CChHHHHHHHhhhccCC-CHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-
Q 005686 47 PDFNNYLAFILARAEGK-SVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG- 124 (683)
Q Consensus 47 p~~~~~l~~il~~~~~~-~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~- 124 (683)
|+......+++...+.. ++.+--.+....++.+ .|-+++--.-+...+.|...+. ...+|.+++.|+-.++.+.
T Consensus 188 p~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fV--SWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkM 263 (980)
T KOG2021|consen 188 PKLVNVWYQILKLYENIVNPGLINSCLDCIGSFV--SWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKM 263 (980)
T ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHh--hhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCC
Confidence 66666666666543333 6666666666666654 3655443333455566666665 4688999999999888653
Q ss_pred CcCChHHHHHHHHHHhc-----cCChhHHhHHHHHHHHHHhhchhccc-------cCCCCCC----cchhHhhHHHHHHh
Q 005686 125 GIAGWLELLQALVTCLD-----SNDINHMEGAMDALSKICEDIPQVLD-------SDVPGLA----ECPINIFLPRLLQF 188 (683)
Q Consensus 125 ~~~~~~~l~~~l~~~l~-----s~~~~~r~~al~~l~~l~~~~~~~~~-------~~~~~~~----~~~~~~i~~~l~~~ 188 (683)
.|..--.++..+.+.++ |.+...-..-..-+..++.+.+-++. ++..... ...+-.++|.+++.
T Consensus 264 kP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~ 343 (980)
T KOG2021|consen 264 KPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQF 343 (980)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555533221 22111111122223333444333221 0100000 12244577888899
Q ss_pred hcCCCHHHHHHHHHHHHHHHhccc------hhhHHhHHHHHHHHHhhh-------CC------CC----HHHHHHHHHHH
Q 005686 189 FQSPHTSLRKLSLGSVNQFIMLMP------SALFVSMDQYLQGLFLLS-------ND------PS----AEVRKLVCAAF 245 (683)
Q Consensus 189 l~~~~~~vr~~a~~~l~~~~~~~~------~~~~~~~~~~l~~l~~~~-------~~------~~----~~~~~~~~~~l 245 (683)
+.+...++....+..+..+...+. +.....+..++..++.-+ .| ++ .++|+...-.+
T Consensus 344 l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fq 423 (980)
T KOG2021|consen 344 LNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQ 423 (980)
T ss_pred hcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHH
Confidence 888877777777776666554321 222233444444443311 11 11 24677776666
Q ss_pred HHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCC--chh----hHH--hhhhhhHHHHHhhcccC
Q 005686 246 NLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL--PHE----NLK--EFLPRLVPVLLSNMIYA 317 (683)
Q Consensus 246 ~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~----~~~--~~l~~l~~~l~~~l~~~ 317 (683)
..+....|+.+...+..-+...+...+...+.....|+..+..+++.-. ... .+. ..+..+++.++..-...
T Consensus 424 dti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~ 503 (980)
T KOG2021|consen 424 DTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLA 503 (980)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHccccc
Confidence 7777777776665555554444444455567777889988888887610 000 010 11222223222111000
Q ss_pred hhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh---hcCc--cchhhhHH
Q 005686 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN---VFGD--EILPTLMP 392 (683)
Q Consensus 318 ~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~---~~~~--~~~~~l~~ 392 (683)
. ..+......+..+.+ .+.. ..+|.++.
T Consensus 504 h-----------------------------------------------~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~ 536 (980)
T KOG2021|consen 504 H-----------------------------------------------DHELVQLLFMELIVRYNKFFSTESQKIPLVLN 536 (980)
T ss_pred C-----------------------------------------------CchHHHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 0 112223333333333 2322 22333333
Q ss_pred HHHHHHccC--CCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC---------CCC---------------
Q 005686 393 VIQAKLSAS--GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD---------DKF--------------- 446 (683)
Q Consensus 393 ~l~~~l~~~--~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~---------d~~--------------- 446 (683)
.+ +.+. ...+.++|.-|.+.+..+.+...+.+.+++++++..+-..|. +.+
T Consensus 537 aF---ld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiG 613 (980)
T KOG2021|consen 537 AF---LDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIG 613 (980)
T ss_pred HH---ccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecce
Confidence 22 2221 123378888888999999888887788888877766655551 100
Q ss_pred ---------hhHH-------------------------------------HHHHHHHHHHHHHHHhhhCCC---cchhhH
Q 005686 447 ---------PLIR-------------------------------------SISCWTLSRFSKFIVQDIGHQ---NGREQF 477 (683)
Q Consensus 447 ---------~~vr-------------------------------------~~a~~~l~~l~~~~~~~~~~~---~~~~~~ 477 (683)
+.-+ ..++.++|.+++.+..-..+. .....+
T Consensus 614 viI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf 693 (980)
T KOG2021|consen 614 VIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVF 693 (980)
T ss_pred EEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHH
Confidence 0001 112334444444332110000 011223
Q ss_pred HHHHHHHHHHhcc--CCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcccc
Q 005686 478 EKVLMGLLKRILD--TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (683)
Q Consensus 478 ~~~l~~l~~~l~d--~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (683)
......++..+.. ....+|.+.-..+++++..+++++.||++..++.+++ +.+.+.+-..+..|+.++.....+.
T Consensus 694 ~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~---s~d~kEmvdfl~flsQLihkfk~~~ 770 (980)
T KOG2021|consen 694 SNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS---STDLKEMVDFLGFLSQLIHKFKTDC 770 (980)
T ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444442 2467899999999999999999999999999887654 4444555566677777776666555
Q ss_pred CchhHHHhhhHHHHHHHh
Q 005686 556 NQPVYLDILMPPLIAKWQ 573 (683)
Q Consensus 556 ~~~~~~~~~~~~l~~~~~ 573 (683)
. +++++++|++..+.-
T Consensus 771 ~--~ilnqmlppll~rIf 786 (980)
T KOG2021|consen 771 Y--QILNQMLPPLLNRIF 786 (980)
T ss_pred H--HHHHHHHHHHHHHHH
Confidence 3 688888888776533
No 124
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.76 E-value=0.0039 Score=58.84 Aligned_cols=185 Identities=16% Similarity=0.099 Sum_probs=120.9
Q ss_pred CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHH-----HHhhhhhcCChHHHHHHHHHHHHHH
Q 005686 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS-----ELLPCLGAADRHIRSTVGTIVSVVV 121 (683)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~-----~Ll~~l~~~~~~vr~~~~~~l~~i~ 121 (683)
++....|+.+|.. +.++.++..|...+.+.-. .+..++.+++ .+...+.++++.+|..+..++..++
T Consensus 11 ~~~l~~Ll~lL~~--t~dp~i~e~al~al~n~aa------f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 11 AQELQKLLCLLES--TEDPFIQEKALIALGNSAA------FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred HHHHHHHHHHHhc--CCChHHHHHHHHHHHhhcc------ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 4555678888875 7889999988888876421 2334444443 4555777899999998888888776
Q ss_pred hhc-CcCChHHHHHHHHHHhccC--ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHH
Q 005686 122 QLG-GIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (683)
Q Consensus 122 ~~~-~~~~~~~l~~~l~~~l~s~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~ 198 (683)
... ........++.+.+.+.+. +..++.+|+.+|..+.-..... ..+...+|.++..+..++..+|.
T Consensus 83 ~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~----------~~l~~~i~~ll~LL~~G~~~~k~ 152 (254)
T PF04826_consen 83 VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH----------HMLANYIPDLLSLLSSGSEKTKV 152 (254)
T ss_pred CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh----------hhHHhhHHHHHHHHHcCChHHHH
Confidence 543 2233455677777755543 5577889999998875322211 23456788889999999999999
Q ss_pred HHHHHHHHHHhccchhhHHhHH-HHHHHHHhhhCCC-CHHHHHHHHHHHHHHHh
Q 005686 199 LSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDP-SAEVRKLVCAAFNLLIE 250 (683)
Q Consensus 199 ~a~~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~-~~~~~~~~~~~l~~l~~ 250 (683)
.++++|..+.+. |......+. +.+..+..+++.. ..++...++..+..+.+
T Consensus 153 ~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 153 QVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999988765 221111111 2345555555543 45556666666655543
No 125
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.76 E-value=0.022 Score=55.87 Aligned_cols=194 Identities=20% Similarity=0.149 Sum_probs=126.0
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHhh--CccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhh
Q 005686 228 LLSNDPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (683)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~ 305 (683)
..+.+.....|..++..+..+... .++++..+...++..+.+.++....+-+..|+.++.-++-.-.........+..
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~ 129 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE 129 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence 334556688999999999888764 346777777888998888886654444556666555543321111223345556
Q ss_pred hHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-
Q 005686 306 LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD- 384 (683)
Q Consensus 306 l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~- 384 (683)
+.|.|.+.+.+.. .....|..+..+|+.++-..+.
T Consensus 130 ~~~~L~~~l~d~s--------------------------------------------~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 130 LKPVLKRILTDSS--------------------------------------------ASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHHHhCCc--------------------------------------------cchHHHHHHHHHHHHHHHhhcCC
Confidence 6666655554321 1124677788888877665544
Q ss_pred -cchhhhHHHHH-----HHHccCC-------CCChhhHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhhccCCCChhHH
Q 005686 385 -EILPTLMPVIQ-----AKLSASG-------DEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDKFPLIR 450 (683)
Q Consensus 385 -~~~~~l~~~l~-----~~l~~~~-------~~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~d~~~~vr 450 (683)
.-...+++.+. .+.+... ..+.....+|+.+++-+...++. .+...+...+|.+...|++++..||
T Consensus 166 ~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 166 EEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVR 245 (309)
T ss_pred hhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 22332223332 2222211 11256889999999998887754 4566778889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005686 451 SISCWTLSRFSKFIV 465 (683)
Q Consensus 451 ~~a~~~l~~l~~~~~ 465 (683)
.+|-.+|.-+.+...
T Consensus 246 iAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 246 IAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998887665
No 126
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.75 E-value=0.0085 Score=60.48 Aligned_cols=110 Identities=24% Similarity=0.316 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCC
Q 005686 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (683)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~ 445 (683)
.+|..+...++.+.... ..+.+.+...+++++ |.+|..++.+++.+.... ..+.+...+.+.
T Consensus 195 ~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~---~~vr~~~~~~l~~~~~~~----------~~~~l~~~l~~~ 256 (335)
T COG1413 195 DVRRAAASALGQLGSEN-----VEAADLLVKALSDES---LEVRKAALLALGEIGDEE----------AVDALAKALEDE 256 (335)
T ss_pred HHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCC---HHHHHHHHHHhcccCcch----------hHHHHHHHHhcc
Confidence 37777777777665544 245566777777777 899988888887665422 245566667777
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
++.++..+....+.+ ........+...+.+....++..+..++..+..
T Consensus 257 ~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 257 DVILALLAAAALGAL---------------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred chHHHHHHHHHhccc---------------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 777776665544411 111222334444556666777777777776544
No 127
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.74 E-value=0.013 Score=59.61 Aligned_cols=241 Identities=15% Similarity=0.053 Sum_probs=152.9
Q ss_pred HHHHHhhhhh-cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCC
Q 005686 94 IKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (683)
Q Consensus 94 i~~~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (683)
....++..|. +++..++..++..+. ..+. +..+..+...+.+.++.+|.++...|+.+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~~----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQED----ALDLRSVLAVLQAGPEGLCAGIQAALGWLG------------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccCC----hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------------
Confidence 4556777884 566777665443332 1111 223788888889999999999999996421
Q ss_pred CCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhC
Q 005686 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (683)
Q Consensus 173 ~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 252 (683)
.....+.+...+.+.++.+|..++.+++.-... -.+.+...++|+++.+|..++.++..+-...
T Consensus 115 -----~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 115 -----GRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRAAALRALGELPRRL 178 (410)
T ss_pred -----chHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence 255677888999999999999998777653211 1234555567899999999999998765431
Q ss_pred ccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCC
Q 005686 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (683)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~ 332 (683)
.++.+.....+.++.||..|+..+..+... ... ..+.......
T Consensus 179 ----------a~~~L~~al~d~~~~VR~aA~~al~~lG~~----~A~--------~~l~~~~~~~--------------- 221 (410)
T TIGR02270 179 ----------SESTLRLYLRDSDPEVRFAALEAGLLAGSR----LAW--------GVCRRFQVLE--------------- 221 (410)
T ss_pred ----------chHHHHHHHcCCCHHHHHHHHHHHHHcCCH----hHH--------HHHHHHHhcc---------------
Confidence 112233457889999999999887666331 111 1111100000
Q ss_pred CCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHH
Q 005686 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412 (683)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aa 412 (683)
+ +..+..+...+. ..|.. ..++.+.+.++++ .+|.++
T Consensus 222 ------------------------------g-~~~~~~l~~~la----l~~~~---~a~~~L~~ll~d~-----~vr~~a 258 (410)
T TIGR02270 222 ------------------------------G-GPHRQRLLVLLA----VAGGP---DAQAWLRELLQAA-----ATRREA 258 (410)
T ss_pred ------------------------------C-ccHHHHHHHHHH----hCCch---hHHHHHHHHhcCh-----hhHHHH
Confidence 0 011222111111 11332 5667777777653 489999
Q ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 413 l~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
+.++|.+.. +..++.++..+.|.. ++..|-++++++..
T Consensus 259 ~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 259 LRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 999998765 224677788887654 89999899988864
No 128
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.72 E-value=0.00047 Score=73.28 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
.++.|.+.+.+...+-.+|..-+.+|..+....+...- .+.++.++|.+++++.-++..+|..++.++..+..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vl-------lp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVL-------LPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhh-------ccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 45678888888866777888999999999998876432 24578999999999999999999999999998887
Q ss_pred ccchhhHHhHHHHHHHHHhhhCCCC---HHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHHhhcCCChHHHHHHhhH
Q 005686 210 LMPSALFVSMDQYLQGLFLLSNDPS---AEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (683)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~ 285 (683)
..+.-...++..+++.++.+-.+.+ ..+|..+++|+..+.+..| ..+.+|-+..+..+...+.|+-.-||..|.++
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 7666667788889999999877655 5699999999999999544 67778889999999999999888899999875
No 129
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.71 E-value=0.003 Score=60.08 Aligned_cols=241 Identities=15% Similarity=0.174 Sum_probs=152.8
Q ss_pred HHHHHHccCCCCChhhHHHHHHHHHHHHhcchhh-h-hhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC
Q 005686 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-L-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (683)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~-~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (683)
.+.+++.+++ +..|..|+.+|+.+.+..+.. + ...+.-++.+....+.| ++.+..+ +.++..+.+ +..
T Consensus 3 ~Lg~~Ltsed---~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~-~~~---- 72 (262)
T PF14500_consen 3 SLGEYLTSED---PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVK-MKN---- 72 (262)
T ss_pred chhhhhCCCC---HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHh-CcC----
Confidence 3556788888 999999999999999888643 3 34566688888888854 4445554 666666663 221
Q ss_pred CcchhhHHHHHHHHHHHhccC--CccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHH
Q 005686 471 QNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTL 547 (683)
Q Consensus 471 ~~~~~~~~~~l~~l~~~l~d~--~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~-~~~~~~~~~~~l~~l 547 (683)
........++..+++..+.+ ....|..+...+..+++.....+...-+.++..+++.++.. +.+++..+++.+..+
T Consensus 73 -~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 73 -FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred -CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 13344566677776654432 35678888889998888877777767777888888888765 456777888888877
Q ss_pred HHHhccccCchhHHHhhhHHHHHHHh---cCCCCCc-chh--hHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Q 005686 548 ADAVGFELNQPVYLDILMPPLIAKWQ---QLPNSDK-DLF--PLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA 621 (683)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~-~~~--~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~ 621 (683)
...... . ++.+.++..+.-.+- +.+.+++ .+. .+-..+..... ..+. |.+..+|.++.-|...
T Consensus 152 ~~~~~~--~--~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~---fa~~~~p~LleKL~s~--- 220 (262)
T PF14500_consen 152 LQEFDI--S--EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPL---FAPFAFPLLLEKLDST--- 220 (262)
T ss_pred HHhccc--c--hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHh---hHHHHHHHHHHHHcCC---
Confidence 776543 2 466655554433221 0111232 221 22222222111 1223 4456777766666532
Q ss_pred hhCCcccCCCCCchHHHHHHHHHHHHHHHhccc-hHHhHHhhcCCc
Q 005686 622 KVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG-IESLVISLFPNL 666 (683)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~i~p~l 666 (683)
....+.-++..+...+..+|.. +.+|...+-..|
T Consensus 221 -----------~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 221 -----------SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred -----------CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 2346777888899989888865 778877765554
No 130
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.089 Score=54.64 Aligned_cols=145 Identities=13% Similarity=0.203 Sum_probs=111.0
Q ss_pred HHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHH
Q 005686 14 FNEICRLLEQQIS-PSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (683)
Q Consensus 14 ~~~l~~~l~~~~s-~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~ 92 (683)
+.+|..+-+.++. .|++ .|.+|++.|.++...|+.+..+.-++.. +..+.....|+..|-+.+.++- .++-+.|-
T Consensus 4 LaqLe~lCk~LY~s~D~~-~R~~AE~~L~e~s~speclskCqlll~~--gs~pYs~mlAst~L~Klvs~~t-~lpl~qrl 79 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPT-ARHRAEKALAELSESPECLSKCQLLLER--GSYPYSQMLASTCLMKLVSRKT-PLPLEQRL 79 (1082)
T ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHcCCC-CCcHHHHH
Confidence 4455566666664 5888 9999999999999999999988888874 7778888888888888887653 58889999
Q ss_pred HHHHHHhhhhhcC----ChHHHHHHHHHHHHHHhhcCc--C----ChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhc
Q 005686 93 YIKSELLPCLGAA----DRHIRSTVGTIVSVVVQLGGI--A----GWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (683)
Q Consensus 93 ~i~~~Ll~~l~~~----~~~vr~~~~~~l~~i~~~~~~--~----~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~ 162 (683)
.|++-++..+... .+-|-.++.+.++.+-+..|- + .+.+.+..+.+.++.++.+.-..++.+|..++.+.
T Consensus 80 dir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqem 159 (1082)
T KOG1410|consen 80 DIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEM 159 (1082)
T ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Confidence 9999999999752 456777888899998887642 1 35667777777777666666666666666666554
No 131
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.70 E-value=0.00056 Score=59.65 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=97.1
Q ss_pred chhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC-----CCChhHHHHHHHHHHHH
Q 005686 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRF 460 (683)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l 460 (683)
..|.+++.+...++.+. +|..|..++.++|.++.-. ||.-+ .+..... +.+.........
T Consensus 7 ~yP~LL~~L~~iLk~e~--s~~iR~E~lr~lGilGALD-----P~~~k---~~~~~~~~~~~~~~~~~~~~~~l~----- 71 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQ--SQSIRREALRVLGILGALD-----PYKHK---SIQKSLDSKSSENSNDESTDISLP----- 71 (160)
T ss_pred HhHHHHHHHHHHHHhCC--CHHHHHHHHHHhhhccccC-----cHHHh---cccccCCccccccccccchhhHHh-----
Confidence 35788888888887642 3999999999999988743 33322 1111111 112222222111
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHhccCC-ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHH
Q 005686 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRI 539 (683)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~ 539 (683)
.... .+...+-|..-++..|++.++|++ ..-+..++.|+..+++..+....||++.+++.++..+....+..++.
T Consensus 72 ~~~~----~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~ 147 (160)
T PF11865_consen 72 MMGI----SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREF 147 (160)
T ss_pred hccC----CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHH
Confidence 0000 001123344567899999999875 45566889999999988888889999999999999999877655557
Q ss_pred HHHHHHHHHHHh
Q 005686 540 VYDAIGTLADAV 551 (683)
Q Consensus 540 ~~~~l~~l~~~~ 551 (683)
.+.-++.++..+
T Consensus 148 ~~~qL~~lv~iv 159 (160)
T PF11865_consen 148 YFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHh
Confidence 777777776644
No 132
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.70 E-value=0.011 Score=56.18 Aligned_cols=249 Identities=18% Similarity=0.175 Sum_probs=149.9
Q ss_pred HHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchh
Q 005686 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (683)
Q Consensus 135 ~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~ 214 (683)
.|...++++++..|..|+.+|..+.+..+...-. ...+..++..+..-+.| ...-..+++++..++.. +..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~------~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~-~~~ 73 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLS------RQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKM-KNF 73 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhcc------HHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhC-cCC
Confidence 4567788999999999999999999998864221 13356666666666643 33333447777777632 111
Q ss_pred hHHhHHHHHHHHHhhhC--CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcC-CChHHHHHHhhHHHHhhc
Q 005686 215 LFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFE 291 (683)
Q Consensus 215 ~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~ 291 (683)
-......++..+++... .--...|..+++.+..+++.+...+...-..++..+++.+.. .|+.--..+++.+..+..
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 11223345666655332 223467999999999999887766654445666666666654 467666777777777766
Q ss_pred cCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 005686 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (683)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a 371 (683)
.-. +.++.+.++..+.-+...+ ++|. .+|. .....
T Consensus 154 ~~~----~~~~~e~lFd~~~cYFPI~---------------------F~pp-------------~~dp-------~~IT~ 188 (262)
T PF14500_consen 154 EFD----ISEFAEDLFDVFSCYFPIT---------------------FRPP-------------PNDP-------YGITR 188 (262)
T ss_pred hcc----cchhHHHHHHHhhheeeee---------------------eeCC-------------CCCC-------CCCCH
Confidence 511 2455555555553332210 0000 0000 00011
Q ss_pred HHHHHHHHhhcC--ccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhh
Q 005686 372 AAALDVLSNVFG--DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIP 440 (683)
Q Consensus 372 ~~~l~~l~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~ 440 (683)
.++-..+-..+. ....+..+|.+.+-+.++. ..++.-++..+...+...+ +.+.+|..++...+..
T Consensus 189 edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~---~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 189 EDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTS---PSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 112222333332 2445688999999999887 7899999998887776553 4567888777766543
No 133
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.68 E-value=0.00017 Score=56.36 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=63.7
Q ss_pred HHHHhhcc-CCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhccc
Q 005686 435 VAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (683)
Q Consensus 435 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (683)
+|.+++.+ +|+++.||..+++++|++.. +.+++.+...++|+++.||..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD---------------PEAIPALIELLKDEDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------
Confidence 46777877 89999999999999996532 356788888889999999999999999772
Q ss_pred chHHHHHHHHHHHHHHHHhhHhH-HHHHHHHHH
Q 005686 514 LAPRLEIILQHLMMAFGKYQRRN-LRIVYDAIG 545 (683)
Q Consensus 514 l~~~l~~i~~~L~~~l~~~~~~~-~~~~~~~l~ 545 (683)
-+..++.|...+.+.++.. +..+..+||
T Consensus 60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1445566666676654443 456777664
No 134
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.67 E-value=0.094 Score=62.89 Aligned_cols=337 Identities=13% Similarity=0.098 Sum_probs=177.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHh-ccch-hhH--HhHHHHHHHHHhhh-CCCCHHHHHHHHHHHHHHHhhCccchhh
Q 005686 184 RLLQFFQSPHTSLRKLSLGSVNQFIM-LMPS-ALF--VSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (683)
Q Consensus 184 ~l~~~l~~~~~~vr~~a~~~l~~~~~-~~~~-~~~--~~~~~~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (683)
.+...-.+++..++..|+..|..+.. +++. ++. ..-..++..+...+ ...+.++|..+++|+..++......++.
T Consensus 1141 hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS 1220 (1780)
T PLN03076 1141 FFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS 1220 (1780)
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 33433344567888999998877763 3331 111 11123444444332 3456789999999999999998888888
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhH----HhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCC
Q 005686 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL----KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (683)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~ 334 (683)
-++.++..+.....+.++.+...|++.+..+.+. ....+ ...+..++..+..+.....
T Consensus 1221 GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d--~f~~l~~~~~~~F~DlV~cL~~Fa~q~~---------------- 1282 (1780)
T PLN03076 1221 GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE--YFPYITETETTTFTDCVNCLIAFTNSRF---------------- 1282 (1780)
T ss_pred CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh--hhhhccccchhHHHHHHHHHHHHHhCcC----------------
Confidence 8899999988888888888999999988777654 11111 1233344444333221100
Q ss_pred ccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHH
Q 005686 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAV 413 (683)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal 413 (683)
+ .++.-.|...|..++..+-+ .+. .... ......+.. +........
T Consensus 1283 --------------------~---------~nISL~AI~lL~~~~~~La~~~~~-~~~~--~~~~~~~~~-~s~~~~~~~ 1329 (1780)
T PLN03076 1283 --------------------N---------KDISLNAIAFLRFCATKLAEGDLG-SSSR--NKDKEAPPS-SPQSGKDGK 1329 (1780)
T ss_pred --------------------c---------ccccHHHHHHHHHHHHHHHhcccc-cccc--ccccccccc-ccccccccc
Confidence 0 01223344444444333311 000 0000 000000000 000000000
Q ss_pred HHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccC--
Q 005686 414 LALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-- 491 (683)
Q Consensus 414 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~-- 491 (683)
.....+.. .+....+--.++-.+.....|+.+.||..|+.+|=++....+....+..-...+..++..++..++..
T Consensus 1330 ~~~~~~~~--~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~ 1407 (1780)
T PLN03076 1330 QESGEFTD--KDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAID 1407 (1780)
T ss_pred cccccccc--chhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00000000 00111111123333444455889999999998887766544332111111222344444454444310
Q ss_pred --------------C-------ccHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 005686 492 --------------N-------KRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (683)
Q Consensus 492 --------------~-------~~v~~~a~~al~~l~~~~---~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l 547 (683)
+ .-+...+..||..+++-. -+.+.+.++.++..|..++...++.--+....|+..+
T Consensus 1408 ~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~l 1487 (1780)
T PLN03076 1408 PSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRL 1487 (1780)
T ss_pred cccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 0 012334444444444433 3556677888888888888776666667889999999
Q ss_pred HHHhccccCchhHHHhhhHHHHHHHhc
Q 005686 548 ADAVGFELNQPVYLDILMPPLIAKWQQ 574 (683)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 574 (683)
+...|..|. ...+..++..+.+.+..
T Consensus 1488 i~~ng~~F~-~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1488 MSNAGHLFS-DEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHhhccCC-HHHHHHHHHHHHHHHHH
Confidence 999999885 45777777777766554
No 135
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.66 E-value=0.0015 Score=69.62 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=112.9
Q ss_pred HHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcC----cCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcccc
Q 005686 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG----IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (683)
Q Consensus 93 ~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~----~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (683)
.+.+.+.+.+......+|...-.+++++....+ -...|.++|.++++++-+|..+|...+.++..+....+.-..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t- 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT- 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch-
Confidence 344455555554556667666667777766543 356799999999999999999999999999888887665443
Q ss_pred CCCCCCcchhHhhHHHHHHhhcCCC---HHHHHHHHHHHHHHHhccch-hhHHhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 005686 169 DVPGLAECPINIFLPRLLQFFQSPH---TSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (683)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~~l~~~~---~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (683)
.++..++|.++..-.+++ ..||..|++|+..+.+..|. .+.++-+..+..+.+.++|+.--+|+.|.++
T Consensus 946 -------~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 -------EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred -------HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 457889999998877765 58999999999999997774 5566777889999999999888899988765
No 136
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.056 Score=51.00 Aligned_cols=300 Identities=15% Similarity=0.107 Sum_probs=166.0
Q ss_pred ChhHHhH---HHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchh-hHHh-
Q 005686 144 DINHMEG---AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVS- 218 (683)
Q Consensus 144 ~~~~r~~---al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~- 218 (683)
|.+.|+. .+.+|..+.+..... ...++++|.+..++..++..|+..+++.++.+++..... +...
T Consensus 53 NenhrekttlcVscLERLfkakega----------hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseil 122 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGA----------HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEIL 122 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccch----------hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHH
Confidence 3455666 666777766654321 234778888999999999999999999999999876532 1111
Q ss_pred ---HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHH-----H--HHhhcCCChHHHHHHhhHHHH
Q 005686 219 ---MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY-----M--LQVNKDTDDDVALEACEFWHS 288 (683)
Q Consensus 219 ---~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~-----~--~~~~~~~~~~vr~~a~~~l~~ 288 (683)
-..+++.++..+...+.++.+.+.+.+..+..... -+ ..|++. + ......-++-+|...++.+..
T Consensus 123 lvvNaeilklildcIggeddeVAkAAiesikrialfpa-al----eaiFeSellDdlhlrnlaakcndiaRvRVleLIie 197 (524)
T KOG4413|consen 123 LVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA-AL----EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIE 197 (524)
T ss_pred HHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH-HH----HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHH
Confidence 12567778888888889999999999887764321 11 111110 0 001111133456666776666
Q ss_pred hhccCCchhhHHhhh--hhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccccc
Q 005686 289 YFEAQLPHENLKEFL--PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (683)
Q Consensus 289 l~~~~~~~~~~~~~l--~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~ 366 (683)
+.+. .+. ...+. +.++..+...|.-+++. -
T Consensus 198 ifSi--Spe-saneckkSGLldlLeaElkGteDt---------------------------------------------L 229 (524)
T KOG4413|consen 198 IFSI--SPE-SANECKKSGLLDLLEAELKGTEDT---------------------------------------------L 229 (524)
T ss_pred HHhc--CHH-HHhHhhhhhHHHHHHHHhcCCcce---------------------------------------------e
Confidence 6443 111 11111 12334433333321110 1
Q ss_pred HHHHHHHHHHHHHhhcC-ccchh--hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc------hhhhhhhHHHHHHH
Q 005686 367 LRKCSAAALDVLSNVFG-DEILP--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC------IKGLYPHLSEIVAF 437 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~~~-~~~~~--~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~------~~~~~~~~~~l~~~ 437 (683)
++..+.+....++..-. .+.++ .++..+...+...+ ..+..+.-++..++.+.... ++..-+.+...+..
T Consensus 230 VianciElvteLaeteHgreflaQeglIdlicnIIsGad-sdPfekfralmgfgkffgkeaimdvseeaicealiiaidg 308 (524)
T KOG4413|consen 230 VIANCIELVTELAETEHGREFLAQEGLIDLICNIISGAD-SDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDG 308 (524)
T ss_pred ehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHh
Confidence 34444455555554432 23332 45666666665321 11677777788777765532 12222334444555
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCC-ccHHHHHHHHHHHHHHHh
Q 005686 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEA 510 (683)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~-~~v~~~a~~al~~l~~~~ 510 (683)
.+..+..++|....+|..++|.+.....+. .....--++-...++...-|.+ ..-+..+..+|..+....
T Consensus 309 sfEmiEmnDpdaieaAiDalGilGSnteGa---dlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 309 SFEMIEMNDPDAIEAAIDALGILGSNTEGA---DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred hHHhhhcCCchHHHHHHHHHHhccCCcchh---HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 666667788889999999999998765432 0111111222233333333333 345667777777776543
No 137
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.65 E-value=0.081 Score=64.57 Aligned_cols=246 Identities=18% Similarity=0.169 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhc----CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc--cCCHh-H--HHHHHHHHhh-h
Q 005686 32 DKSQIWQQLQQYSQ----FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--SMSPS-N--QQYIKSELLP-C 101 (683)
Q Consensus 32 ~r~~A~~~L~~~~~----~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~--~l~~~-~--~~~i~~~Ll~-~ 101 (683)
.-..|.+.+..+.. .+.+...+..-... ..+.++|..++..+...+...-. ..++- . ...+.+.++. +
T Consensus 460 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~a 537 (2341)
T KOG0891|consen 460 DIQLAFKTLGGFKFSGYSLTLFVQQCVDSYLE--ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVA 537 (2341)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHh
Confidence 44446666665432 45566654444443 67899999997776655543211 11221 1 2223333333 4
Q ss_pred hhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhh
Q 005686 102 LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (683)
Q Consensus 102 l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (683)
+.++++.+|...-..+. -+.+..-.-|+.+..++..+.+.....+..+...++.++...+.... +.+
T Consensus 538 ia~~~~~i~~~v~~~l~--~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl-----------~~l 604 (2341)
T KOG0891|consen 538 IADTDPDIRIRVLSSLN--ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVL-----------PSL 604 (2341)
T ss_pred ccCCCcchhhhHHhhhc--cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHh-----------HHH
Confidence 45677777655433333 01111122245566666777777777777777777776665443221 111
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh
Q 005686 182 LPRLLQFFQS----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 182 ~~~l~~~l~~----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
-...+..++. +-..+....-+-+...+...+..+.+++.+++..+...+.+++..+-+.+..++..++...+..+.
T Consensus 605 r~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~ 684 (2341)
T KOG0891|consen 605 RKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMV 684 (2341)
T ss_pred HHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhh
Confidence 1112222222 222222222222233333334445566666677777777888888888899999999998887776
Q ss_pred hhHHHHHHHHHHhhcCCC-hHHHHHHhhHHHHhhcc
Q 005686 258 PHLRNLFEYMLQVNKDTD-DDVALEACEFWHSYFEA 292 (683)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~-~~vr~~a~~~l~~l~~~ 292 (683)
.+++.++..+.+.+.+.. ..-|..++..+..+++.
T Consensus 685 ~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 685 KWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred hccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 666666666666654433 33456677778887665
No 138
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.64 E-value=0.055 Score=54.59 Aligned_cols=186 Identities=18% Similarity=0.162 Sum_probs=125.3
Q ss_pred ChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC
Q 005686 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA 127 (683)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~ 127 (683)
..+..+...+. +.+..+|..|+..++.. .-......+...+.+.++.+|..++.+++.+..
T Consensus 43 ~~~~~~~~~l~---~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----- 103 (335)
T COG1413 43 EAADELLKLLE---DEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----- 103 (335)
T ss_pred hhHHHHHHHHc---CCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-----
Confidence 46677777776 34899999998775321 112344567778889999999999996665543
Q ss_pred ChHHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCC------------H
Q 005686 128 GWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH------------T 194 (683)
Q Consensus 128 ~~~~l~~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~------------~ 194 (683)
+.-++.+...+. +.+..+|..+..+|+.+-.. ..+..++..+++.. .
T Consensus 104 --~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~------------------~a~~~l~~~l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 104 --PEAVPPLVELLENDENEGVRAAAARALGKLGDE------------------RALDPLLEALQDEDSGSAAAALDAALL 163 (335)
T ss_pred --hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch------------------hhhHHHHHHhccchhhhhhhhccchHH
Confidence 455666666666 68999999999999775431 11334555555543 2
Q ss_pred HHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCC
Q 005686 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT 274 (683)
Q Consensus 195 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~ 274 (683)
.+|..+...+..+..- ...+.+...+.+.+..+|..+...+..+.... ..+...+.....+.
T Consensus 164 ~~r~~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~ 225 (335)
T COG1413 164 DVRAAAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE 225 (335)
T ss_pred HHHHHHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC
Confidence 4666666666555321 22445556667777789999998888776654 34555666678888
Q ss_pred ChHHHHHHhhHHHHhh
Q 005686 275 DDDVALEACEFWHSYF 290 (683)
Q Consensus 275 ~~~vr~~a~~~l~~l~ 290 (683)
+..+|..++..++.+.
T Consensus 226 ~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 226 SLEVRKAALLALGEIG 241 (335)
T ss_pred CHHHHHHHHHHhcccC
Confidence 9999998887776653
No 139
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.23 Score=57.28 Aligned_cols=330 Identities=12% Similarity=0.058 Sum_probs=168.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccC--CHhHHHHHHHHHhhhh---hcC-ChHHHHHHHHHHHHHHhh-------c--Cc
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSM--SPSNQQYIKSELLPCL---GAA-DRHIRSTVGTIVSVVVQL-------G--GI 126 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l--~~~~~~~i~~~Ll~~l---~~~-~~~vr~~~~~~l~~i~~~-------~--~~ 126 (683)
+.+..+|...+.++-..++-.-+.. ..+....|-+.++..+ ++. ++...+ -..++-++++. . ..
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r-~~~lletl~~~k~~l~~~l~d~~ 139 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKR-YFYLLETLAKVKFCLLMLLEDCQ 139 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhh-HHHHHHHHHHhHHHheeeccchH
Confidence 7889999999999877776543332 2334555555666554 332 333221 11222222221 1 22
Q ss_pred CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 005686 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (683)
Q Consensus 127 ~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~ 206 (683)
.-.++++..+...+..+-+.-...-+.++..+...... .-..++..++.-|-.+.......|...-..
T Consensus 140 e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~------------v~~e~L~~ll~~lv~~~~~~~~~a~~la~~ 207 (1266)
T KOG1525|consen 140 ELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDT------------VQSELLDVLLENLVKPGRDTIKEADKLASD 207 (1266)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHhccCCCCccHHHHHHHHH
Confidence 34456666666666544433333333344443332221 124555555555544444444444444444
Q ss_pred HHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHH
Q 005686 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (683)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l 286 (683)
++..++..+.+.+.+++...+......-..++....+.+..+....|..+. .+++.+..-+...+..+|..|...+
T Consensus 208 li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~----~vip~l~~eL~se~~~~Rl~a~~lv 283 (1266)
T KOG1525|consen 208 LIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLL----AVIPQLEFELLSEQEEVRLKAVKLV 283 (1266)
T ss_pred HHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 444434434444544444433322212234455666666666666665543 4555555556667888999999998
Q ss_pred HHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccccc
Q 005686 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (683)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~ 366 (683)
+.+...+.. .+..-.+.+....+..+.+. ...
T Consensus 284 g~~~~~~~~--~l~~~~~~~~~~fl~r~~D~----------------------------------------------~~~ 315 (1266)
T KOG1525|consen 284 GRMFSDKDS--QLSETYDDLWSAFLGRFNDI----------------------------------------------SVE 315 (1266)
T ss_pred HHHHhcchh--hhcccchHHHHHHHHHhccC----------------------------------------------Chh
Confidence 887654211 11111222222222222211 114
Q ss_pred HHHHHHHHHHHHHhhcCccchh-hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCC
Q 005686 367 LRKCSAAALDVLSNVFGDEILP-TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~ 445 (683)
+|..+.++...+....+.-... .+.-.+.. .+.+ ..+|......+....- .+....+.+.++..+...+.|.
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~--~~~D---~~~rir~~v~i~~~~v--~~~~l~~~~~ll~~~~eR~rDK 388 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKASTILLALRE--RDLD---EDVRVRTQVVIVACDV--MKFKLVYIPLLLKLVAERLRDK 388 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHHHHHHHHHh--hcCC---hhhhheeeEEEEEeeh--hHhhhhhhHHHHHHHHHHHhhh
Confidence 7888777766654444331111 11222222 2333 4555544333321111 1112345555889999999999
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 005686 446 FPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~ 463 (683)
.+.||..|+..+.++-+.
T Consensus 389 k~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 389 KIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999999884
No 140
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.61 E-value=0.12 Score=53.76 Aligned_cols=432 Identities=13% Similarity=0.023 Sum_probs=210.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhh--cCChHHHHHHHHHHHHHHhhc--CcCCh--HHHHHH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG--AADRHIRSTVGTIVSVVVQLG--GIAGW--LELLQA 135 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~--~~~~~vr~~~~~~l~~i~~~~--~~~~~--~~l~~~ 135 (683)
..+++.-..|....|+.+..+-+.-.+..+-.-...++.++. +....+.+..+.++++.+..+ +.+.. ...++.
T Consensus 20 ~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 20 HLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLK 99 (678)
T ss_pred cCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHH
Confidence 456666666777787777554333233333333344454554 345566677888888887654 11222 335788
Q ss_pred HHHHhccCC-hhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhccch
Q 005686 136 LVTCLDSND-INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPS 213 (683)
Q Consensus 136 l~~~l~s~~-~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~vr~~a~~~l~~~~~~~~~ 213 (683)
+++++.++| .+++.+.+.++..+.+..+..-. ........+++.+...+. ..+...+.-+..+. .. +..+.
T Consensus 100 Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~-----~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a-~~-s~~~~ 172 (678)
T KOG1293|consen 100 LLQLLSESDSLNVLEKTLRCLRTIFETSKYQDK-----KMSLHLKSIIVKFSLLYSIELKYISRLDVSRAA-HL-SSTKD 172 (678)
T ss_pred HHHHhcCcchHhHHHHHHHHHHHHHhccccccc-----chhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc-cc-cccch
Confidence 899998888 78999999999999887643210 001234566666666555 22222222111111 11 11110
Q ss_pred h---hH-HhHHHHHHHHHhhhCCCCHHHHHHHHHHHH---HHHhhCccchhhhHH-----HHHH--HHHHhhcCCChHHH
Q 005686 214 A---LF-VSMDQYLQGLFLLSNDPSAEVRKLVCAAFN---LLIEVRPSFLEPHLR-----NLFE--YMLQVNKDTDDDVA 279 (683)
Q Consensus 214 ~---~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~---~l~~~~~~~~~~~l~-----~l~~--~~~~~~~~~~~~vr 279 (683)
. +. ..+.+-+..+.. ......|.+++.++. .++.+.+..-...+. .+.+ ...+..++++.+.|
T Consensus 173 hq~Il~Na~i~ekI~~l~~---~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~ 249 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLM---YLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER 249 (678)
T ss_pred hhheeccccchhhHHHHHH---hhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence 0 00 001111111111 124567788888877 443333322111111 1111 22344567777778
Q ss_pred HHHhhHHHHhhccC-Cc-----hhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCC
Q 005686 280 LEACEFWHSYFEAQ-LP-----HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSEN 353 (683)
Q Consensus 280 ~~a~~~l~~l~~~~-~~-----~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 353 (683)
..+++++..+.+.. .. +....+..++.+-.. .++...
T Consensus 250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~-~~i~l~------------------------------------ 292 (678)
T KOG1293|consen 250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQY-NCIVLM------------------------------------ 292 (678)
T ss_pred HHHHHHHHHHHhccccccccccceeeccCchHHHHHH-hhheee------------------------------------
Confidence 88888887776541 00 111111111111000 000000
Q ss_pred CCCCCccccccccHHHHHH--HHHHH-HHhhcCc-----cchhhhHHHHHHH--HccCCCCChhhHHHHHHH---HHHHH
Q 005686 354 PEDDDDDIVNVWNLRKCSA--AALDV-LSNVFGD-----EILPTLMPVIQAK--LSASGDEAWKDREAAVLA---LGAIA 420 (683)
Q Consensus 354 ~~~dd~~~~~~~~~r~~a~--~~l~~-l~~~~~~-----~~~~~l~~~l~~~--l~~~~~~~~~~r~aal~~---l~~l~ 420 (683)
. ++.|+.-..+. -|+.. ++..+.. ...+.+...+..+ +.... .+.|.-++.- ...++
T Consensus 293 ~-------~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~---~~~~~i~l~e~~i~~~~~ 362 (678)
T KOG1293|consen 293 N-------DPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASD---EKYRLILLNETLILNHLE 362 (678)
T ss_pred c-------CCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcc---hhhhHHHhhhhhhhhhhh
Confidence 0 00111111111 12221 3333322 1222333333221 22333 3444443321 12222
Q ss_pred hcchhhhhhhHHH--HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHH
Q 005686 421 EGCIKGLYPHLSE--IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEA 498 (683)
Q Consensus 421 ~~~~~~~~~~~~~--l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~ 498 (683)
.+......+++.. +...+....-..+..++.+||.++-.++....... ....-..++..+++.+.|+...|...
T Consensus 363 ~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~----tg~~~~dv~~plvqll~dp~~~i~~~ 438 (678)
T KOG1293|consen 363 YGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR----TGLKRNDVAQPLVQLLMDPEIMIMGI 438 (678)
T ss_pred hhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH----cCCccchhHHHHHHHhhCcchhHHHH
Confidence 2222222333322 22222222234567788999999888887766441 12233456666777778999999999
Q ss_pred HHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccc
Q 005686 499 ACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (683)
Q Consensus 499 a~~al~~l~~~~~~~l~~~l-~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (683)
+..||.+++-..++.=..++ ...++.+.+.+.+.....+..++.++-.+.-.+...
T Consensus 439 ~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~ 495 (678)
T KOG1293|consen 439 TLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE 495 (678)
T ss_pred HHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence 99999999877754333333 346666777777766555556666666665554443
No 141
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.61 E-value=0.051 Score=65.06 Aligned_cols=343 Identities=13% Similarity=0.104 Sum_probs=180.0
Q ss_pred ChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 005686 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQ 206 (683)
Q Consensus 128 ~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~ 206 (683)
.|.-+-+.+.+...+.+..++..|+..|..++-.+-+.- +... ....+.++..+...+.+ .+.++|...++|+..
T Consensus 1134 iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~e--EL~~--f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~q 1209 (1780)
T PLN03076 1134 IWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLERE--ELAN--YNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQ 1209 (1780)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchh--hhhc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 343344444443345567788888888888776544311 1100 02235677777766554 577999999999999
Q ss_pred HHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh----hhHHHHHHHHHHhhcCC-ChHHHHH
Q 005686 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE----PHLRNLFEYMLQVNKDT-DDDVALE 281 (683)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~l~~l~~~~~~~~~~~-~~~vr~~ 281 (683)
++......+....+.++..+.....++++.+...+++.+..+++.+-..+. ..+..++..+.+..+.. +.++-..
T Consensus 1210 mI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~ 1289 (1780)
T PLN03076 1210 MVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLN 1289 (1780)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHH
Confidence 987655555555566677777667778888889999998887765433222 23445555554444322 3556666
Q ss_pred HhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccc
Q 005686 282 ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (683)
Q Consensus 282 a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~ 361 (683)
|++++..++.. . ....+ ......+ +.+.... .... ..+..+++.
T Consensus 1290 AI~lL~~~~~~--L---a~~~~--------~~~~~~~-~~~~~~~----------------~s~~----~~~~~~~~~-- 1333 (1780)
T PLN03076 1290 AIAFLRFCATK--L---AEGDL--------GSSSRNK-DKEAPPS----------------SPQS----GKDGKQESG-- 1333 (1780)
T ss_pred HHHHHHHHHHH--H---Hhccc--------ccccccc-ccccccc----------------cccc----ccccccccc--
Confidence 77666554332 0 00000 0000000 0000000 0000 000000000
Q ss_pred cccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhh-----hHHHHHH
Q 005686 362 VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYP-----HLSEIVA 436 (683)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~-----~~~~l~~ 436 (683)
.+.... - . ....=.++..+.....++. .++|..|+..|..+....+..+.+ .+..++-
T Consensus 1334 ----~~~~~~--~-------~-~~lW~pLL~~Ls~l~~D~R---lEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLF 1396 (1780)
T PLN03076 1334 ----EFTDKD--D-------H-LYFWFPLLAGLSELSFDPR---PEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLF 1396 (1780)
T ss_pred ----ccccch--h-------H-HHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 000000 0 0 0111133334444455565 889999999888776655544433 1232222
Q ss_pred HHhhccC-----------------------CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCc
Q 005686 437 FLIPLLD-----------------------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK 493 (683)
Q Consensus 437 ~l~~~l~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~ 493 (683)
.++..++ +....+..++..++..++..+..+. ......++.++..|..++..++.
T Consensus 1397 PIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fF--d~L~~~L~~~l~ll~~ci~q~n~ 1474 (1780)
T PLN03076 1397 PIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFY--PTVNPLLKKVLMLLVSFIKRPHQ 1474 (1780)
T ss_pred HHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCchH
Confidence 2222221 0112345566666666665544331 02344667777777777777788
Q ss_pred cHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHH
Q 005686 494 RVQEAACSAFATLEEEAAEELAP-RLEIILQHLMMAF 529 (683)
Q Consensus 494 ~v~~~a~~al~~l~~~~~~~l~~-~l~~i~~~L~~~l 529 (683)
.+...++.+|..++...+..+.+ .-..++..+..++
T Consensus 1475 ~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1475 SLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 88899999999999887766643 3344444444444
No 142
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.13 Score=54.17 Aligned_cols=334 Identities=15% Similarity=0.107 Sum_probs=182.3
Q ss_pred hHhhHHHHHHhhcC-----C---CHHHHHHHHHHHHHHHhccc--hhhHHhHHH-HHHHHHhhhCCCCHHHHHHHHHHHH
Q 005686 178 INIFLPRLLQFFQS-----P---HTSLRKLSLGSVNQFIMLMP--SALFVSMDQ-YLQGLFLLSNDPSAEVRKLVCAAFN 246 (683)
Q Consensus 178 ~~~i~~~l~~~l~~-----~---~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~l~ 246 (683)
+..+++.+...++. + ++.-...|++.+.++.+.+. ..+...+.. +++.+...+.++.--.+.++|+.+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 46677777666632 1 23445667888877776432 233333433 4566777778777788999999999
Q ss_pred HHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhh
Q 005686 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEA 326 (683)
Q Consensus 247 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~ 326 (683)
.+-...++. ..+..+.+....++++.+-.|+..|..++..+..+...+..+..+++..+..++..-..-+-|
T Consensus 486 ~~eeDfkd~--~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD------ 557 (970)
T COG5656 486 TIEEDFKDN--GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEID------ 557 (970)
T ss_pred HHHHhcccc--hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccch------
Confidence 884433332 344567778888888888888888888887776664444555555555555544322111100
Q ss_pred cccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cch----hhhHHHHHHHHc
Q 005686 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL----PTLMPVIQAKLS 399 (683)
Q Consensus 327 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~----~~l~~~l~~~l~ 399 (683)
.+........+.++..+.. +.. ..++....+.+.
T Consensus 558 ---------------------------------------~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~e 598 (970)
T COG5656 558 ---------------------------------------PLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLE 598 (970)
T ss_pred ---------------------------------------HHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHc
Confidence 1222333333333333321 222 222233333443
Q ss_pred cCC--CCChhhHH-HHHHHHHHHHh---cchh--hhhhhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC
Q 005686 400 ASG--DEAWKDRE-AAVLALGAIAE---GCIK--GLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (683)
Q Consensus 400 ~~~--~~~~~~r~-aal~~l~~l~~---~~~~--~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (683)
.++ ......+. +|.-.|..+.. .... .+-+++ ..+.|.+--.+++.-..+...|+..+..+.-...
T Consensus 599 ns~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~sk----- 673 (970)
T COG5656 599 NSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSK----- 673 (970)
T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH-----
Confidence 221 00122233 33333332222 2111 112233 3345554445555556677777777766543332
Q ss_pred CcchhhHHHHHHHHHHHhccCCc-cHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHHhhH--hHHHHHHHHH
Q 005686 471 QNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEAAEELA---PRLEIILQHLMMAFGKYQR--RNLRIVYDAI 544 (683)
Q Consensus 471 ~~~~~~~~~~l~~l~~~l~d~~~-~v~~~a~~al~~l~~~~~~~l~---~~l~~i~~~L~~~l~~~~~--~~~~~~~~~l 544 (683)
...+....++..+.+.+.+... .-.+.+..++.+++--.+..+. -|...+......++..... .....+++.+
T Consensus 674 -eI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~ 752 (970)
T COG5656 674 -EIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRII 752 (970)
T ss_pred -HhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHH
Confidence 1234445555555555555442 4566778888888876655442 3666666666666765543 4566888889
Q ss_pred HHHHHHhccccCchhHHHhhh
Q 005686 545 GTLADAVGFELNQPVYLDILM 565 (683)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~~~ 565 (683)
..++-+.+.++.. +|.+-+.
T Consensus 753 e~l~Ln~rd~Ll~-qy~plfi 772 (970)
T COG5656 753 ESLILNIRDELLS-QYLPLFI 772 (970)
T ss_pred HHHHHHccchhHH-hhhHHHH
Confidence 9999888876543 3555333
No 143
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.17 Score=58.37 Aligned_cols=342 Identities=14% Similarity=0.101 Sum_probs=174.9
Q ss_pred HHHHHHhh--hhhcCChHHHHHHHHHHHHHHhhcCc------CChHHHHHHHHHHhc---cC-Ch--hHHhHHHHHHHHH
Q 005686 93 YIKSELLP--CLGAADRHIRSTVGTIVSVVVQLGGI------AGWLELLQALVTCLD---SN-DI--NHMEGAMDALSKI 158 (683)
Q Consensus 93 ~i~~~Ll~--~l~~~~~~vr~~~~~~l~~i~~~~~~------~~~~~l~~~l~~~l~---s~-~~--~~r~~al~~l~~l 158 (683)
.+...|++ .|..++..||--.+-|++.|.+...| ....+++..+..-+. +. ++ ..+..-++.+..+
T Consensus 48 pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~ 127 (1266)
T KOG1525|consen 48 PLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKV 127 (1266)
T ss_pred HHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHh
Confidence 34444444 44678999999999999999998622 234445555444332 21 22 2333334444433
Q ss_pred HhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHH
Q 005686 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVR 238 (683)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 238 (683)
. .+-.+....- +..+..++..++..+.++.+.--..-...+..++.... ..-..++..++.-+-.+..+..
T Consensus 128 k-~~l~~~l~d~----~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d----~v~~e~L~~ll~~lv~~~~~~~ 198 (1266)
T KOG1525|consen 128 K-FCLLMLLEDC----QELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEED----TVQSELLDVLLENLVKPGRDTI 198 (1266)
T ss_pred H-HHheeeccch----HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHhccCCCCcc
Confidence 3 2221111110 13345555666666656554333333333333332211 1111334555444433445555
Q ss_pred HHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccCh
Q 005686 239 KLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD 318 (683)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 318 (683)
..+...=..++...+..+.+.+...+.-.+..-...--.++....+.+..+ +......+-.++|.+...+....
T Consensus 199 ~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L------~~~~p~ll~~vip~l~~eL~se~ 272 (1266)
T KOG1525|consen 199 KEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILEL------WRIAPQLLLAVIPQLEFELLSEQ 272 (1266)
T ss_pred HHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHH------HHhhHHHHHHHHHHHHHHHhcch
Confidence 666665566667666666666655554433222211111222223333333 22233345556666654443211
Q ss_pred hhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccc---hhhhHHHHH
Q 005686 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI---LPTLMPVIQ 395 (683)
Q Consensus 319 ~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~l~~~l~ 395 (683)
+ .+|..|...++.|....+... .+.++..+.
T Consensus 273 ~----------------------------------------------~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl 306 (1266)
T KOG1525|consen 273 E----------------------------------------------EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFL 306 (1266)
T ss_pred H----------------------------------------------HHHHHHHHHHHHHHhcchhhhcccchHHHHHHH
Confidence 0 268888888888776665433 344555455
Q ss_pred HHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchh
Q 005686 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (683)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 475 (683)
..+.+.. ..+|.+++.+.....-..+... .- ..+...+....-|.+.++|....-......+. ...
T Consensus 307 ~r~~D~~---~~vR~~~v~~~~~~l~~~~~~~-~~-~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~---------~l~ 372 (1266)
T KOG1525|consen 307 GRFNDIS---VEVRMECVESIKQCLLNNPSIA-KA-STILLALRERDLDEDVRVRTQVVIVACDVMKF---------KLV 372 (1266)
T ss_pred HHhccCC---hhhhhhHHHHhHHHHhcCchhh-hH-HHHHHHHHhhcCChhhhheeeEEEEEeehhHh---------hhh
Confidence 5555555 8999999988776554432111 11 11222233333344444444322111111111 124
Q ss_pred hHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Q 005686 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (683)
Q Consensus 476 ~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (683)
+...++..+.+.+.|....||..|...|..+-+.
T Consensus 373 ~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 373 YIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4444888888889999999999999999998875
No 144
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.60 E-value=0.022 Score=58.52 Aligned_cols=305 Identities=15% Similarity=0.151 Sum_probs=160.8
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHh----hhCCC-CHHHHHHHHHHHHHHHh
Q 005686 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL----LSNDP-SAEVRKLVCAAFNLLIE 250 (683)
Q Consensus 176 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~-~~~~~~~~~~~l~~l~~ 250 (683)
+....++..++..+..+...--...++|+..++....+...+....+++.|.. ..++| ++..-...+++++.++.
T Consensus 22 p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp CCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Confidence 45678888888888664333334455555555554444444444444444433 34443 56777788888888876
Q ss_pred hCc----cchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhh
Q 005686 251 VRP----SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEA 326 (683)
Q Consensus 251 ~~~----~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~ 326 (683)
... ..+...-+.+++.+...++.+-.+..-++++.+..+.+... ...+.+....+++.++.- ..|+.
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~-~~~~p~~y~~L~~~Ll~p--------~lWe~ 172 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP-SSPLPDAYKQLFPPLLSP--------ALWER 172 (435)
T ss_dssp HS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS---S--TTTGGGHHHHTSG--------GGGGS
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHcCc--------chhcc
Confidence 533 33334445677777767665544566788888888877622 234555666777766421 11210
Q ss_pred cccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc-----chhhhHHHHHHHHccC
Q 005686 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-----ILPTLMPVIQAKLSAS 401 (683)
Q Consensus 327 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~l~~~l~~~l~~~ 401 (683)
. -++ -+..+.|..+.+..+.. .+..++..+++++.+.
T Consensus 173 ~-------------------------------------gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 173 R-------------------------------------GNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp T-------------------------------------TTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred C-------------------------------------CCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 0 012 23445555555544442 3457788888888775
Q ss_pred CCCChhhHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhhccCC-CChhHHHHHHHHHHHHHHHHHhhh----CCCcchh
Q 005686 402 GDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDI----GHQNGRE 475 (683)
Q Consensus 402 ~~~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~ 475 (683)
. .-.-+...+..+...++. .+.+|+++++..++..|+. ..+..+..-+..++.++....... -......
T Consensus 215 ~-----~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~g 289 (435)
T PF03378_consen 215 A-----NDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPG 289 (435)
T ss_dssp T-----CHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTT
T ss_pred C-----cchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCC
Confidence 3 224577888899888864 6789999999999999974 344444444455555443322110 0001112
Q ss_pred hHHHHHHHH-HHHhcc-CCccHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHh
Q 005686 476 QFEKVLMGL-LKRILD-TNKRVQEAACSAFATLEEEAAEE---LAPRLEIILQHLMMAFGKY 532 (683)
Q Consensus 476 ~~~~~l~~l-~~~l~d-~~~~v~~~a~~al~~l~~~~~~~---l~~~l~~i~~~L~~~l~~~ 532 (683)
.+..++..+ +..++. ..+.-|..++-++.+++..+..- .......+++.++..+...
T Consensus 290 lF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 290 LFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERP 351 (435)
T ss_dssp HHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCC
Confidence 233333322 222332 12334566666677766444322 2334555666666655544
No 145
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.60 E-value=0.062 Score=56.12 Aligned_cols=282 Identities=13% Similarity=0.104 Sum_probs=147.1
Q ss_pred HhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-hcCCC----hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccC
Q 005686 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQY-SQFPD----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (683)
Q Consensus 12 ~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~-~~~p~----~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l 86 (683)
+..+....+|.... .+.. .++-|.+.+-+| +..|+ ++..++.++. +.+..+|..|.--|-.... -
T Consensus 20 ~~~~~y~~il~~~k-g~~k-~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE---Ded~~iR~~aik~lp~~ck-----~ 89 (556)
T PF05918_consen 20 QHEEDYKEILDGVK-GSPK-EKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE---DEDVQIRKQAIKGLPQLCK-----D 89 (556)
T ss_dssp GGHHHHHHHHHGGG-S-HH-HHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT----SSHHHHHHHHHHGGGG-------T
T ss_pred cCHHHHHHHHHHcc-CCHH-HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh---cccHHHHHHHHHhHHHHHH-----h
Confidence 44466777887765 3566 888888888885 45676 4566677654 6789999988755533222 2
Q ss_pred CHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc
Q 005686 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (683)
Q Consensus 87 ~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~ 166 (683)
+++....+-..|.++|.++++.-+..+-.++..+.+.++.+....++..+... .+++..+|+.++..+..=+..++...
T Consensus 90 ~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~ 168 (556)
T PF05918_consen 90 NPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPEL 168 (556)
T ss_dssp --T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHH
Confidence 45677788889999999888888889999999999988777777777777643 35677889998877755444444332
Q ss_pred ccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccch----hhHHhHHHHHHHHHhhh------CCCCHH
Q 005686 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS----ALFVSMDQYLQGLFLLS------NDPSAE 236 (683)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~----~~~~~~~~~l~~l~~~~------~~~~~~ 236 (683)
..- + +..-..++..+.+.|.|-.. .=+..+-.++..++- .-......+++.+.... .-.+++
T Consensus 169 ~~p--~--~E~e~~i~~~ikkvL~DVTa----eEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e 240 (556)
T PF05918_consen 169 LTP--Q--KEMEEFIVDEIKKVLQDVTA----EEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPE 240 (556)
T ss_dssp S-------HHHHHHHHHHHHHHCTT--H----HHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHH
T ss_pred hhc--h--HHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHH
Confidence 210 0 12234555667777877332 223333333333221 11222334455555432 113445
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHHHHHHHHH----hhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHh
Q 005686 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQ----VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (683)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~ 312 (683)
.....+.|+..-.-....- .+-..++.++.. .+.+-.++.+...+..+..++..... ......++.++..++.
T Consensus 241 ~Idrli~C~~~Alp~fs~~--v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~-~d~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRG--VSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGA-QDARQLLPSIFQLLKK 317 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTT--B--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT-----THHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHhcCC--CChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCc-ccHHHHHHHHHHHHHH
Confidence 5555566655433222111 111233333322 23333445566566666555544211 2245666777777776
Q ss_pred hcc
Q 005686 313 NMI 315 (683)
Q Consensus 313 ~l~ 315 (683)
+|.
T Consensus 318 ymP 320 (556)
T PF05918_consen 318 YMP 320 (556)
T ss_dssp TS-
T ss_pred hCC
Confidence 665
No 146
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.58 E-value=0.0012 Score=57.64 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH---HHHhc
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL---ADAVG 552 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~-~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l---~~~~~ 552 (683)
++..+|.++..+.+.....+--|..++..+++. .++.+.|.+++++..+.++++..+.++...++.+|..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 467889999999998888999999999999999 67889999999999999999999888998999999998 66788
Q ss_pred cccCchhHHHhhhHHHH
Q 005686 553 FELNQPVYLDILMPPLI 569 (683)
Q Consensus 553 ~~~~~~~~~~~~~~~l~ 569 (683)
+.+. ||+.+++|.+.
T Consensus 116 ~aLv--PyyrqLLp~ln 130 (183)
T PF10274_consen 116 EALV--PYYRQLLPVLN 130 (183)
T ss_pred HHHH--HHHHHHHHHHH
Confidence 8876 89999998764
No 147
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.54 E-value=0.007 Score=62.13 Aligned_cols=209 Identities=11% Similarity=0.068 Sum_probs=120.3
Q ss_pred ChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHH
Q 005686 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (683)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 483 (683)
|-..-.+.++.+..+.+.........+..+...+....+ .++|..-+..+.++|.+.++.... ++.....+-+.++|.
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~-~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA-DPEAVSQFEEALFPP 121 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG-GHH---HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC-ChhHHHHHHHHHHHH
Confidence 356666666666555554433333333444444433333 457888899999999998876532 111233566778888
Q ss_pred HHHHhccCCccHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHH
Q 005686 484 LLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD 562 (683)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 562 (683)
+...|+.+..+..-.+...|+.+++... ..+.+.+..+++.|+.-.--....+.-.+...+.+++...+..+.....+.
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~ 201 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLE 201 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHH
Confidence 8888887666777788888888888765 455445555544443211111123455777888888887666553334555
Q ss_pred hhhHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhcc-ccccchHHHHHHHHHHHHHH
Q 005686 563 ILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQ 618 (683)
Q Consensus 563 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~-~f~~~~~~~~~~l~~~l~~~ 618 (683)
.++......+. .+..|. ..++.+..+...+.. .+.+|++.++..++.-|++.
T Consensus 202 ~iLgvFQkLi~-sk~~D~---~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 202 PILGVFQKLIA-SKANDH---YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp HHHHHHHHHHT--TTCHH---HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC-CCCcch---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 55543332232 222222 456677777888877 68999999999999888764
No 148
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.53 E-value=0.0042 Score=54.72 Aligned_cols=134 Identities=19% Similarity=0.137 Sum_probs=106.5
Q ss_pred hhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCC-ccHHHHHHHHHHHHH
Q 005686 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLE 507 (683)
Q Consensus 429 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~-~~v~~~a~~al~~l~ 507 (683)
..+..++..+...+++.++.-|..++..++..++..+.. .........+..+++.++.++ +.+...++.++..+.
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e----~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE----ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456667788888999999999999999999999887443 355667888888999888754 568899999999999
Q ss_pred HHh-------cccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHH
Q 005686 508 EEA-------AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA 570 (683)
Q Consensus 508 ~~~-------~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 570 (683)
... ++...|.++.+++.+++.+++ ......+++++..+....+..+. ||..++-..+..
T Consensus 97 ~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r--p~~~ki~~~l~~ 162 (165)
T PF08167_consen 97 DLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR--PFANKIESALLS 162 (165)
T ss_pred HHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc--chHHHHHHHHHH
Confidence 765 245678999999999998886 34556889999999998877776 687776655544
No 149
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.53 E-value=9.7e-05 Score=44.04 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.9
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 005686 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 434 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (683)
++|.+++.++|+++.||.+|+++++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 150
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.019 Score=59.84 Aligned_cols=252 Identities=17% Similarity=0.142 Sum_probs=139.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh---cCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc--CCH
Q 005686 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--MSP 88 (683)
Q Consensus 14 ~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~---~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~--l~~ 88 (683)
+.++.+..+.++.++ .++-..+...... -+.+|..++-.++.--+.....-|.. -++.+.+.. ..+ ...
T Consensus 7 ~~~If~k~Q~s~agh---~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl--~fla~fv~s-l~q~d~e~ 80 (892)
T KOG2025|consen 7 MQLIFNKIQQSDAGH---YSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRIL--SFLARFVES-LPQLDKEE 80 (892)
T ss_pred HHHHHHHHHhhhcch---HHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHH--HHHHHHHHh-hhccCchh
Confidence 345555555555555 3443333333322 24466666665554222333222321 222223322 112 334
Q ss_pred hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc---CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc
Q 005686 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (683)
Q Consensus 89 ~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~---~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~ 165 (683)
+..+++...++....+++..||...+++++.+.... ....+..+...+..-+.+-.+.+|..|+.+|..+=..-.+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d- 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD- 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence 556666666777777889999999999999998742 3456788888888889999999999999999776542222
Q ss_pred cccCCCCCCcchhHhhHHHHHHhh-cCCCHHHHHHHHHHHHHHHhccchhhH------------------H-------hH
Q 005686 166 LDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMPSALF------------------V-------SM 219 (683)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~vr~~a~~~l~~~~~~~~~~~~------------------~-------~~ 219 (683)
++ ..+...+...+ +||+++||.+|+.++..--...|-.+. + .+
T Consensus 160 --ee---------~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi 228 (892)
T KOG2025|consen 160 --EE---------CPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSI 228 (892)
T ss_pred --Cc---------ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH
Confidence 11 22333344444 569999999999877432222221100 0 01
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHh
Q 005686 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (683)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 289 (683)
...+..+-..+.|.+..++.++.+.+.. .++...-..|++.+-..--+...+++..+++.+...
T Consensus 229 ~krv~LlewgLnDRe~sVk~A~~d~il~------~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 229 DKRVLLLEWGLNDREFSVKGALVDAILS------GWLRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHH------HHhhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1122222233445555555544444332 111111124555555554555667888888887774
No 151
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.48 E-value=0.21 Score=53.05 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=64.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhc----CCCh---HHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHh
Q 005686 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDF---NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (683)
Q Consensus 17 l~~~l~~~~s~~~~~~r~~A~~~L~~~~~----~p~~---~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~ 89 (683)
|..+|..+-||+.. +|++..+.|+++.+ .|++ +..|+....+ .+.+.-+|.++.++++..+ +.++++
T Consensus 25 L~plLlkl~S~~~~-VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~-~~~s~~vrnfsliyi~~g~----~Rl~~~ 98 (501)
T PF13001_consen 25 LPPLLLKLASPHAS-VRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKE-PSDSSFVRNFSLIYIEMGF----DRLDDE 98 (501)
T ss_pred HHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhC-CCCchHHHHHHHHHHHHhh----hcCCHH
Confidence 44577788899999 99999999998643 4665 4567776664 2447899999999996554 458999
Q ss_pred HHHHHHHHHhhhhhc
Q 005686 90 NQQYIKSELLPCLGA 104 (683)
Q Consensus 90 ~~~~i~~~Ll~~l~~ 104 (683)
.+..+...+++.+..
T Consensus 99 e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 99 ERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999974
No 152
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.45 E-value=0.021 Score=54.02 Aligned_cols=212 Identities=17% Similarity=0.165 Sum_probs=134.5
Q ss_pred CHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---------ChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH
Q 005686 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFP---------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR 80 (683)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p---------~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~ 80 (683)
+++.++.|..+|+.+ .|+. ++.+|.-.+......| +.+..+..++. +.++.+|..|...+.+.
T Consensus 10 ~~~~l~~Ll~lL~~t--~dp~-i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~---~p~~~vr~~AL~aL~Nl-- 81 (254)
T PF04826_consen 10 EAQELQKLLCLLEST--EDPF-IQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN---DPNPSVREKALNALNNL-- 81 (254)
T ss_pred CHHHHHHHHHHHhcC--CChH-HHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC---CCChHHHHHHHHHHHhc--
Confidence 345567788877764 4555 8899988888765433 33444444443 67899998888887654
Q ss_pred HhhccCCHhHHHHHHHHHhhhh----hc-CChHHHHHHHHHHHHHHhhc-CcCChHHHHHHHHHHhccCChhHHhHHHHH
Q 005686 81 TAYKSMSPSNQQYIKSELLPCL----GA-ADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDA 154 (683)
Q Consensus 81 ~~w~~l~~~~~~~i~~~Ll~~l----~~-~~~~vr~~~~~~l~~i~~~~-~~~~~~~l~~~l~~~l~s~~~~~r~~al~~ 154 (683)
..+.+.+..++..+-+.. .. -+..++.++.++|..+.... ........++.++.++.+++...|..++.+
T Consensus 82 ----s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 82 ----SVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKV 157 (254)
T ss_pred ----CCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHH
Confidence 233445555554333333 33 36788877778888886443 334456678888999999999999999999
Q ss_pred HHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC-CHHHHHHHHHHHHHHHhccchh-------------hH---H
Q 005686 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSA-------------LF---V 217 (683)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~vr~~a~~~l~~~~~~~~~~-------------~~---~ 217 (683)
|..+.+.-... . + -...+.++.++..+... +.++...++..+..+.....+. +. .
T Consensus 158 L~nLS~np~~~-~-~------Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~ 229 (254)
T PF04826_consen 158 LVNLSENPDMT-R-E------LLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG 229 (254)
T ss_pred HHHhccCHHHH-H-H------HHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence 98887643211 0 0 01234566777888774 6678888888887775443211 11 1
Q ss_pred hHHHHHHHHHhhhCCCCHHHHHHH
Q 005686 218 SMDQYLQGLFLLSNDPSAEVRKLV 241 (683)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~~~ 241 (683)
....+-+.+..+..++|++|+..+
T Consensus 230 e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 230 ESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred cHHHHHHHHHHHHcCCCHHHhhhc
Confidence 122345556666677888887654
No 153
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.40 E-value=0.16 Score=50.14 Aligned_cols=193 Identities=13% Similarity=0.169 Sum_probs=123.0
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-----------CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch-
Q 005686 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP- 163 (683)
Q Consensus 96 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-----------~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~- 163 (683)
..|+..|..-+-..|+.++.+.+.+.+.... ..||+++..+..+..+++... .+-..|+.+++.-.
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k~e~l 156 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIKHESL 156 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTTSHHH
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHhhHHH
Confidence 3445555555566677777777777665311 456888888888887666322 22233333333211
Q ss_pred -hc-cccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc----hhhHHhHHHHHHHHHhhhCCCCHHH
Q 005686 164 -QV-LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAEV 237 (683)
Q Consensus 164 -~~-~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~ 237 (683)
.. +. ...+-.+++..+.++-+|...|+.++..+...-+ +.+..+.+.++.....++.+++--.
T Consensus 157 ~~~iL~-----------~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 157 AKIILY-----------SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHHHT-----------SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHhC-----------cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 00 11 1233347788889999999999999998875533 3445566677787777888888889
Q ss_pred HHHHHHHHHHHHhh--CccchhhhHH--HHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHh
Q 005686 238 RKLVCAAFNLLIEV--RPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301 (683)
Q Consensus 238 ~~~~~~~l~~l~~~--~~~~~~~~l~--~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 301 (683)
|..+++.|+.++.. ....+..|+. .-+..++..+++....++..|+..+.-++.+|..+..+..
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~ 293 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVD 293 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHH
Confidence 99999999999853 3456667764 5677788889999999999999988887766544443433
No 154
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.40 E-value=0.0057 Score=53.88 Aligned_cols=139 Identities=23% Similarity=0.257 Sum_probs=107.4
Q ss_pred chhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHhhccCC-CChhHHHHHHHHHHHHHHH
Q 005686 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~ 463 (683)
.++.+...+.+.+++.+ +..|-+++..+..+++.+ .+.+..+...-+..+++.++. +.+.++..++.+++.+...
T Consensus 22 ~l~~l~~ri~~LL~s~~---~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKS---AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCCC---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34567777888999888 999999999999999987 555656667777777777764 4567889999999999987
Q ss_pred HHhhh--CCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 005686 464 IVQDI--GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF 529 (683)
Q Consensus 464 ~~~~~--~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l 529 (683)
..+.. ..+...+.++.+++.+++.+++ ..+...++.+|..++......+.||...+-..+...+
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 76431 1122456677788888887765 5678899999999999888999999888877666544
No 155
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.0036 Score=68.73 Aligned_cols=178 Identities=17% Similarity=0.200 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhhc---C-cCChHHHHHHHHHHhc----cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHH
Q 005686 112 TVGTIVSVVVQLG---G-IAGWLELLQALVTCLD----SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (683)
Q Consensus 112 ~~~~~l~~i~~~~---~-~~~~~~l~~~l~~~l~----s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (683)
..+..+.-|+..+ + ..-...+.|.+.+.++ .++|..+.+|..+|+.++.-..++ ...-+|
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f------------ces~l~ 963 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF------------CESHLP 963 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH------------HHHHHH
Confidence 3566777777654 3 3455778888888885 357899999999999988765543 355688
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHH
Q 005686 184 RLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (683)
Q Consensus 184 ~l~~~l~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 262 (683)
.++..+. ++++.+|..++-+++.++-..| ..++.+.+.++..+.|+++.+|+.++-++..++-..--.++.++..
T Consensus 964 llftimeksp~p~IRsN~VvalgDlav~fp----nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e 1039 (1251)
T KOG0414|consen 964 LLFTIMEKSPSPRIRSNLVVALGDLAVRFP----NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE 1039 (1251)
T ss_pred HHHHHHhcCCCceeeecchheccchhhhcc----cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH
Confidence 8999987 7899999999999988875533 2345667888899999999999999999999988776667777766
Q ss_pred HHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhccc
Q 005686 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIY 316 (683)
Q Consensus 263 l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~ 316 (683)
+.- ++.|+++.++..|=.|+..+.+.. ..+ -.++|.++..+++
T Consensus 1040 MA~----cl~D~~~~IsdlAk~FF~Els~k~---n~i----ynlLPdil~~Ls~ 1082 (1251)
T KOG0414|consen 1040 MAL----CLEDPNAEISDLAKSFFKELSSKG---NTI----YNLLPDILSRLSN 1082 (1251)
T ss_pred HHH----HhcCCcHHHHHHHHHHHHHhhhcc---cch----hhhchHHHHhhcc
Confidence 554 678899999999999999997752 233 3445555555554
No 156
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.055 Score=58.74 Aligned_cols=98 Identities=20% Similarity=0.051 Sum_probs=78.5
Q ss_pred chhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc---hhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC---IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~---~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
++..++.....++++++ -..|..++.++..-.... ++.+-|.+.+..|.++..+.+.+|.+-..|+.++-++++
T Consensus 800 iv~kIl~r~~~~LS~e~---l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHES---LRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHHhcchh---HHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34466677778888888 899999998887533322 445678888999999999999999999999999999999
Q ss_pred HHHhhhCCCcchhhHHHHHHHHHHHhcc
Q 005686 463 FIVQDIGHQNGREQFEKVLMGLLKRILD 490 (683)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~l~~~l~d 490 (683)
+.+.+ ....++..++|.+-..+++
T Consensus 877 ~sgDF----v~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 877 YSGDF----VASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HhhhH----HHHHHHHHHHHHHHHHHHH
Confidence 98877 4677888888888766655
No 157
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.02 Score=62.35 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCC-CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 483 (683)
.+.|..|.+.|+.+..+.+..-...+ ..++...+..++| ++|..|.-+|-+||++=+.+... ...-.-......
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A----rw~G~r~~Ahek 646 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA----RWSGRRDNAHEK 646 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh----hhccccccHHHH
Confidence 58999999999999998643222222 3467788888988 48999999999999998766532 111122345567
Q ss_pred HHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 484 LLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
|+..+.|+.++||.+|+.||+.++...
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 777888999999999999999999864
No 158
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.18 E-value=0.42 Score=58.75 Aligned_cols=441 Identities=15% Similarity=0.183 Sum_probs=233.1
Q ss_pred HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc------C---ChHHHHHHHHHHh-ccCChhHHhHHHHHHHHHHhh
Q 005686 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI------A---GWLELLQALVTCL-DSNDINHMEGAMDALSKICED 161 (683)
Q Consensus 92 ~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~------~---~~~~l~~~l~~~l-~s~~~~~r~~al~~l~~l~~~ 161 (683)
..++..+...+...++.+|..++..+..+.+.... . ....++..+..+. .++++..|...+..+. +.
T Consensus 480 ~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~ 556 (2341)
T KOG0891|consen 480 LFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ER 556 (2341)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cc
Confidence 34444455566667889998887777777665311 1 1233333333322 3566666665555543 11
Q ss_pred chhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHH-hhhCCCCHHHHHH
Q 005686 162 IPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF-LLSNDPSAEVRKL 240 (683)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~ 240 (683)
+... ...+..+...+..+.++.-.++.++...++.+....|..+.+.+........ .+..+.-..+...
T Consensus 557 ~~~~----------laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~ 626 (2341)
T KOG0891|consen 557 FDAQ----------LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEE 626 (2341)
T ss_pred hhhh----------hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHH
Confidence 1111 1124556667788888888999999999998888777666666653332222 2222222233333
Q ss_pred HHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhh
Q 005686 241 VCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (683)
Q Consensus 241 ~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d 320 (683)
...-+..++...+..+.+|+..++..++..+.+.+..+-..+...++.+|.. .....+.+...+++.+...+.+..
T Consensus 627 ~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v--~g~~~~~~~~~~~~~~~~~l~~~s-- 702 (2341)
T KOG0891|consen 627 SAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAV--GGEEMVKWVDELFSLIIKMLQDQS-- 702 (2341)
T ss_pred HHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHh--ccchhhhccchHHHHHHHHHHHhh--
Confidence 4444556666677777888888887777777777766666777778887765 222233333333333322222110
Q ss_pred hhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-----cchhhhHHHHH
Q 005686 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQ 395 (683)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~ 395 (683)
....|.++..++..+...-|- .-.|.++..+.
T Consensus 703 -------------------------------------------~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~ 739 (2341)
T KOG0891|consen 703 -------------------------------------------SLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILI 739 (2341)
T ss_pred -------------------------------------------hhhchhHHHHHhhhhhcccceEecccccChHHHHHHH
Confidence 012456666666666655432 22445555554
Q ss_pred HHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHH--hhccCC-CChhHHHHHHHHHHHHHHHHHhhhCCCc
Q 005686 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFL--IPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (683)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l--~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (683)
..+.... ....|.+++..++..+.- .++........ ...... .++.. .....-.+...+ .
T Consensus 740 ~~~~te~--~~~ir~~~v~~~g~~g~~-----d~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~---------~ 802 (2341)
T KOG0891|consen 740 NILKTEQ--SSTIRREAIRLLGLLGAL-----DPYKHKVTEGTSASKISSEQIKSDI-DISLLESGVNPS---------N 802 (2341)
T ss_pred HHHhHhh--hhHHHHHHHHHhhhhccc-----chhHHHHHhhhhhHhhhhccccccc-hHHHHHhhhhhh---------h
Confidence 4443321 156788888888844432 22222222111 111111 11100 111011111111 1
Q ss_pred chhhHHHHHHHHHHHhccCC-ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q 005686 473 GREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (683)
Q Consensus 473 ~~~~~~~~l~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (683)
..-|.-..+..+...+.|+. ..-......++..+....+.....+++.+++.++..............+.-+.....-.
T Consensus 803 ~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~ 882 (2341)
T KOG0891|consen 803 DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIV 882 (2341)
T ss_pred hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhcc
Confidence 01111223345555566542 22234456666677777788888999999988877766433223333343333333333
Q ss_pred ccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHH
Q 005686 552 GFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINII 615 (683)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l 615 (683)
..... +|.+.+...+...+. .+..+ ...+..+..+..+++..|..|++..++..+..+
T Consensus 883 ~~h~~--~~~~~i~~~i~~~~~----~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~ 941 (2341)
T KOG0891|consen 883 RQHIR--PYMESIFTLIKDFWP----PDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVL 941 (2341)
T ss_pred chhHh--hhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheee
Confidence 33332 355544443333332 12222 234566777888888999999999888776655
No 159
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.44 Score=50.47 Aligned_cols=119 Identities=19% Similarity=0.142 Sum_probs=89.4
Q ss_pred HccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhh
Q 005686 398 LSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (683)
Q Consensus 398 l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 476 (683)
+++.+ -.+|.+|..++|-++-..++ .+|.++..|. +-|+.||+.++.+||-.|....
T Consensus 564 VsD~n---DDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG----------- 621 (929)
T KOG2062|consen 564 VSDVN---DDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG----------- 621 (929)
T ss_pred ccccc---hHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-----------
Confidence 45665 78999999999876654332 2444555554 4589999999999999886432
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHH
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLR 538 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~ 538 (683)
....+..|-.+..|+..-||..|+.+++-+.-.+.+.+.|-+..+.+.+.+.+.+..+..+.
T Consensus 622 ~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~a 683 (929)
T KOG2062|consen 622 LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMA 683 (929)
T ss_pred cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHH
Confidence 23344445555668888999999999999998889999999999999999999876555544
No 160
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.017 Score=60.33 Aligned_cols=173 Identities=17% Similarity=0.140 Sum_probs=112.3
Q ss_pred cCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc
Q 005686 45 QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (683)
Q Consensus 45 ~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~ 124 (683)
...++-++.-+++. +.++..|..+...+.-. .. ....-..||+.|--+.++.+..||+++.-+|+-++-.+
T Consensus 516 rqe~Ad~lI~el~~---dkdpilR~~Gm~t~alA--y~----GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 516 RQEDADPLIKELLR---DKDPILRYGGMYTLALA--YV----GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred hhhhhHHHHHHHhc---CCchhhhhhhHHHHHHH--Hh----ccCchhhHHHhhcccccccchHHHHHHHHHheeeEecC
Confidence 34455544444443 55888887655443222 11 11122334443333678899999999999999887655
Q ss_pred CcCChHHHHHHHHHHh-ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHH
Q 005686 125 GIAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGS 203 (683)
Q Consensus 125 ~~~~~~~l~~~l~~~l-~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~ 203 (683)
|+..+...+.+ .+-|+.+|.++..+|+..|...+. ...+..+-....|+..-||+.|+-+
T Consensus 587 -----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------------~eAi~lLepl~~D~~~fVRQgAlIa 647 (929)
T KOG2062|consen 587 -----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------------KEAINLLEPLTSDPVDFVRQGALIA 647 (929)
T ss_pred -----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------------HHHHHHHhhhhcChHHHHHHHHHHH
Confidence 44455555555 367999999999999999987764 3334445555668888999999999
Q ss_pred HHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 005686 204 VNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (683)
Q Consensus 204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l 245 (683)
+..++-...+...|....+-+.+.+.+.|..++.....-.+|
T Consensus 648 ~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 648 LAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred HHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 988875555556666666677777777776665544433333
No 161
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.15 E-value=0.51 Score=51.44 Aligned_cols=108 Identities=7% Similarity=0.143 Sum_probs=80.3
Q ss_pred HHHHHHHhhhhh-cCChHHHHHHHHHHHHHHhhc-CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccC
Q 005686 92 QYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (683)
Q Consensus 92 ~~i~~~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~-~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (683)
..+...++..+. ++...++..++..+..+...- -...+++.+..|...+++.-..+|..++..|+.+...-+.-+
T Consensus 575 ~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~--- 651 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLF--- 651 (1529)
T ss_pred HHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhh---
Confidence 345556666665 667788999998888887653 456677778888888888888899999999988877655433
Q ss_pred CCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 005686 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (683)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~ 208 (683)
+.....+..+...+.+.+..+...|++.+..+.
T Consensus 652 ------~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 652 ------SLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred ------hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 224566677788888888888888888766554
No 162
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.012 Score=55.15 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=107.6
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcc
Q 005686 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (683)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (683)
....+.+.+ |....-++..+..++..-++.+.+.+..++..+++.+++....|..+||.+++.+....... .
T Consensus 93 ~l~~L~s~d---W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-----i 164 (334)
T KOG2933|consen 93 ALKKLSSDD---WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-----I 164 (334)
T ss_pred HHHHhchHH---HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 334566677 99999999999999998888888999999999999999999999999999999999988653 3
Q ss_pred hhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhc
Q 005686 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (683)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (683)
.+.++.++..|+..-.+++.-|++.|-.||..++..... ..+++.|...+.+.....+..+.-|....+...|
T Consensus 165 ~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 165 DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 446666666666554555778999999999988876532 1244445555555555555555545554444444
No 163
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.073 Score=55.70 Aligned_cols=123 Identities=13% Similarity=0.024 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhc---CCChHHHH-HHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCCh
Q 005686 32 DKSQIWQQLQQYSQ---FPDFNNYL-AFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADR 107 (683)
Q Consensus 32 ~r~~A~~~L~~~~~---~p~~~~~l-~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~ 107 (683)
+-+=+..+...+.+ ..+++..+ -++|...++.+..+|+-.++++...+. .-..+++..-+.+...++..+.+..+
T Consensus 62 Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep 140 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREP 140 (892)
T ss_pred HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCc
Confidence 44444455555543 33465544 445655557788999999998876654 33458888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc-cCChhHHhHHHHHHH
Q 005686 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALS 156 (683)
Q Consensus 108 ~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~-s~~~~~r~~al~~l~ 156 (683)
.||.++..++..+-... .+.--++...+...++ ++++.+|.+++..+.
T Consensus 141 ~VRiqAv~aLsrlQ~d~-~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 141 NVRIQAVLALSRLQGDP-KDEECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred hHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 99999999998876532 2222334445555553 678889999987763
No 164
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.11 E-value=0.043 Score=55.78 Aligned_cols=178 Identities=17% Similarity=0.294 Sum_probs=108.3
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhc----CCChHHHHHHhhHHHHhhccCCch
Q 005686 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK----DTDDDVALEACEFWHSYFEAQLPH 296 (683)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~vr~~a~~~l~~l~~~~~~~ 296 (683)
-++..+.+.+...++..|..|++.|..= .-+...++-++.++-+... ..+-..-.+.+....++.+++ .
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~TD-----sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np--~ 279 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLETD-----SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP--N 279 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccC-----ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC--c
Confidence 3455555555557788899888877531 1112222223333322221 123444456666677776663 3
Q ss_pred hhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHH
Q 005686 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (683)
Q Consensus 297 ~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~ 376 (683)
=.+.+|+.+++|.++.++....-. .+| ..+.+|.+|..|+.++.
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~------------------~~p------------------~~dnhwaLRDfAA~ll~ 323 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLC------------------LRP------------------ELDNHWALRDFAARLLA 323 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhcc------------------CCc------------------cccchHHHHHHHHHHHH
Confidence 357899999999988876532210 010 12368999999999999
Q ss_pred HHHhhcCc---cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHhhcc
Q 005686 377 VLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLL 442 (683)
Q Consensus 377 ~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l 442 (683)
.+...++. .+-+.+...+...+.++ ...|...++++..|..++....+. +.+.+......+...+
T Consensus 324 ~i~k~f~~~y~~L~~Rit~tl~k~l~D~-~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 324 QICKNFSTLYNNLQPRITRTLSKALLDN-KKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 99999987 33456777777777664 233999999999999988754332 2344444444443333
No 165
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.09 E-value=0.0077 Score=52.69 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=87.9
Q ss_pred HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHH---H
Q 005686 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE---E 508 (683)
Q Consensus 432 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~---~ 508 (683)
+..+|.++..+.....--|..|...+..+.+... .....+.+++++..+-..|+..++.|...++.+|..++ +
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~----~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGG----GEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4567888888887666677778777777777622 22567888999999999999999999999999999994 4
Q ss_pred HhcccchHHHHHHHHHHHHHHHHh----------hHhHH-HHHHHHHHHHHHHhcccc
Q 005686 509 EAAEELAPRLEIILQHLMMAFGKY----------QRRNL-RIVYDAIGTLADAVGFEL 555 (683)
Q Consensus 509 ~~~~~l~~~l~~i~~~L~~~l~~~----------~~~~~-~~~~~~l~~l~~~~~~~~ 555 (683)
..++.+.||+.++++.+--..++. ..+.. ..+.++|..+-...|++.
T Consensus 113 ~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 113 MVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 458999999999998765444432 11222 256667776666666653
No 166
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.02 E-value=0.0013 Score=39.14 Aligned_cols=31 Identities=42% Similarity=0.616 Sum_probs=26.9
Q ss_pred hHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc
Q 005686 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (683)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~ 423 (683)
++|.+.+.++|++ |++|.+|+.+++.+++.+
T Consensus 1 llp~l~~~l~D~~---~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPS---PEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SS---HHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCC---HHHHHHHHHHHHHHHhhC
Confidence 5788999999999 999999999999998753
No 167
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.01 E-value=0.062 Score=52.91 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=99.5
Q ss_pred hHHHHHHHH-HHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005686 129 WLELLQALV-TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (683)
Q Consensus 129 ~~~l~~~l~-~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~ 207 (683)
..++++.+. ..+++.++.+|+.|++|||-++-...+ .....++.+...++..+..++..|++++..+
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~------------~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dl 91 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE------------LAKEHLPLFLQALQKDDEEVKITALKALFDL 91 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346666654 788899999999999999988765442 2466778888888777999999999999988
Q ss_pred HhccchhhH---------HhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccch-hhhHHHHHHHHHHhhcCCChH
Q 005686 208 IMLMPSALF---------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL-EPHLRNLFEYMLQVNKDTDDD 277 (683)
Q Consensus 208 ~~~~~~~~~---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~ 277 (683)
+...+.... .....++..+.+.+.+.+++++..+++.+.++.-...-.- ...+..++-....-....+..
T Consensus 92 l~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~ 171 (298)
T PF12719_consen 92 LLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQR 171 (298)
T ss_pred HHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHH
Confidence 754332211 1223567778888887788999999999999865422111 111222222111112223455
Q ss_pred HHHHHhhHHHHhhcc
Q 005686 278 VALEACEFWHSYFEA 292 (683)
Q Consensus 278 vr~~a~~~l~~l~~~ 292 (683)
+|+.---|+-.++..
T Consensus 172 LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 172 LRQCLSVFFPVYASS 186 (298)
T ss_pred HHHHHHHHHHHHHcC
Confidence 665555566667665
No 168
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.96 E-value=0.017 Score=51.03 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHhh-cC---cCChHHHHHHH------------HHHhccCChhHHhHHHHHHHHHHhhchhccc--cC
Q 005686 108 HIRSTVGTIVSVVVQL-GG---IAGWLELLQAL------------VTCLDSNDINHMEGAMDALSKICEDIPQVLD--SD 169 (683)
Q Consensus 108 ~vr~~~~~~l~~i~~~-~~---~~~~~~l~~~l------------~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~--~~ 169 (683)
.||..+..++..+++. +. .+.|+.++|+- .-.+.|+++.+|.+|+.++..+.++....+. ++
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3788999999999998 42 47899998775 2234678889999999999999998765442 11
Q ss_pred CC---CCCcc-------hhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccchh-h-HHhHHHHHHHHHhhhCCCCHH
Q 005686 170 VP---GLAEC-------PINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA-L-FVSMDQYLQGLFLLSNDPSAE 236 (683)
Q Consensus 170 ~~---~~~~~-------~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~-~-~~~~~~~l~~l~~~~~~~~~~ 236 (683)
.. +-|.. .+.++-..+...+.. .+..+....+||+..+++..|=. + ...+..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 11111 122233344455554 46778889999999999876621 1 123445566666677778889
Q ss_pred HHHHHHHHHHHHHhhCc
Q 005686 237 VRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 237 ~~~~~~~~l~~l~~~~~ 253 (683)
++..++.++..++...+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999988876543
No 169
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.95 E-value=0.0088 Score=52.86 Aligned_cols=145 Identities=16% Similarity=0.158 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHH------------hhccCCCChhHHHHHHHHHHHHHHHHHhhhC----
Q 005686 407 KDREAAVLALGAIAEGC-IKGLYPHLSEIVAFL------------IPLLDDKFPLIRSISCWTLSRFSKFIVQDIG---- 469 (683)
Q Consensus 407 ~~r~aal~~l~~l~~~~-~~~~~~~~~~l~~~l------------~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---- 469 (683)
++|.+|+.++..++... ++.+..|-..++|.. --.+.|++++||.+|+.++..+-+..+.++.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47999999999999984 444445555555432 2344689999999999999999876554321
Q ss_pred ---CC-cc-------hhhHHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHHHhc-ccch-HHHHHHHHHHHHHHHHhhHh
Q 005686 470 ---HQ-NG-------REQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAA-EELA-PRLEIILQHLMMAFGKYQRR 535 (683)
Q Consensus 470 ---~~-~~-------~~~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~-~~l~-~~l~~i~~~L~~~l~~~~~~ 535 (683)
+. .. ...+..+-..|+..++ +.+..+....++++..++...+ ..+. .++..++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 00 11 1223333344444455 4467788899999999998874 2333 47778888888888876656
Q ss_pred HHHHHHHHHHHHHHHh
Q 005686 536 NLRIVYDAIGTLADAV 551 (683)
Q Consensus 536 ~~~~~~~~l~~l~~~~ 551 (683)
+...++.|++.++...
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6668888888887653
No 170
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.88 E-value=0.22 Score=49.03 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=87.2
Q ss_pred HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 005686 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (683)
Q Consensus 92 ~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (683)
.-+...+++++.+.++.||..+..++|..+-.+. ..-.+.++.+.+.++.++..++..++.++..+.-.++...-+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 4444555579999999999999999999887653 344566777888887778899999999999988877654322110
Q ss_pred C-CCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 172 G-LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 172 ~-~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
. -.......+...+.+.+.+.++++|..|+..+..+.-
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0 0012246788888999999999999999999998874
No 171
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.87 E-value=0.026 Score=59.13 Aligned_cols=191 Identities=16% Similarity=0.230 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCC
Q 005686 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (683)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~ 338 (683)
|-..+++.+++.++..|..+|..-++-+..+.++- ..+ .+-++++|.+...+.+++.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L-t~~---~~~d~I~phv~~G~~DTn~------------------- 383 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL-TKQ---ILNDQIFPHVALGFLDTNA------------------- 383 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc-CHH---hhcchhHHHHHhhcccCCH-------------------
Confidence 55678888889999999999998888777776651 111 2345667776555543321
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc-chhhhHHHHHHHHccCCCCChhhHHHHHHHHH
Q 005686 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALG 417 (683)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~ 417 (683)
.+|.-...++..++..++.. .-..++.++...-.+.+ ...|.-.-.|+|
T Consensus 384 ---------------------------~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~---~~irtntticlg 433 (690)
T KOG1243|consen 384 ---------------------------TLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH---GGIRTNTTICLG 433 (690)
T ss_pred ---------------------------HHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc---Ccccccceeeec
Confidence 47888888888888888875 33466666665555555 788888888998
Q ss_pred HHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHH
Q 005686 418 AIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE 497 (683)
Q Consensus 418 ~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~ 497 (683)
.++.......+..+ +.......+.|+-+.-|.++.+++..-++++. ....-.+++|.+....-|++..||.
T Consensus 434 ki~~~l~~~~R~~v--L~~aftralkdpf~paR~a~v~~l~at~~~~~-------~~~va~kIlp~l~pl~vd~e~~vr~ 504 (690)
T KOG1243|consen 434 KIAPHLAASVRKRV--LASAFTRALKDPFVPARKAGVLALAATQEYFD-------QSEVANKILPSLVPLTVDPEKTVRD 504 (690)
T ss_pred ccccccchhhhccc--cchhhhhhhcCCCCCchhhhhHHHhhcccccc-------hhhhhhhccccccccccCcccchhh
Confidence 88887533222111 22334447889888899999999888887764 4556677888888777888899999
Q ss_pred HHHHHHHHHHHHhc
Q 005686 498 AACSAFATLEEEAA 511 (683)
Q Consensus 498 ~a~~al~~l~~~~~ 511 (683)
.|-.++..+.....
T Consensus 505 ~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 505 TAEKAIRQFLEKLE 518 (690)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998877654
No 172
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.17 Score=49.02 Aligned_cols=143 Identities=15% Similarity=0.032 Sum_probs=96.8
Q ss_pred ChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHH
Q 005686 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMG 483 (683)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~ 483 (683)
+...|+.|+.-|..+++.......=.--..+..++..+++.+..+|..|+++||..+..-+.. ....+ ...++.
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~-----Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS-----QEQVIELGALSK 170 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH-----HHHHHHcccHHH
Confidence 388999999999988886642111011113445556999999999999999999998765532 22222 236777
Q ss_pred HHHHhcc-CCccHHHHHHHHHHHHHHHhcccchHHHH-HHHHHHHHHHHHhh--HhHHHHHHHHHHHHHHHhc
Q 005686 484 LLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLE-IILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVG 552 (683)
Q Consensus 484 l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~l~~~l~-~i~~~L~~~l~~~~--~~~~~~~~~~l~~l~~~~~ 552 (683)
|+..+.. ++..+|..|+.|++.++++.......++. .-...|..+++..+ -+..+.++..++.+.....
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 7777774 45678899999999999987654444332 12556677777643 2344578888888877643
No 173
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=96.75 E-value=0.041 Score=54.96 Aligned_cols=156 Identities=15% Similarity=0.241 Sum_probs=95.9
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhc---CCChHHHHHHhhHHHHhhccCCchhh
Q 005686 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK---DTDDDVALEACEFWHSYFEAQLPHEN 298 (683)
Q Consensus 222 ~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~vr~~a~~~l~~l~~~~~~~~~ 298 (683)
++..+.+.+.+.++..|..++..|.. . .-+.+.++-++.++.+... +.+-..-...+.+..++..++. -.
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~t---D--~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~--l~ 251 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRT---D--PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN--LH 251 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcc---C--CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC--Cc
Confidence 34444444444567777777666542 1 1122223333333333221 1144455666777788877733 35
Q ss_pred HHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 005686 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (683)
Q Consensus 299 ~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l 378 (683)
+.+|+.+++|.++.++....-. ... +...+|.+|..|+.++..+
T Consensus 252 le~Ylh~Lip~vltclv~~~l~-------------------------------~~~-----~~~~h~~LRd~AA~ll~~i 295 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLC-------------------------------SRP-----PDDNHWALRDYAARLLAQI 295 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhc-------------------------------CCC-----CCchHHHHHHHHHHHHHHH
Confidence 7899999999998887543210 000 0235799999999999999
Q ss_pred HhhcCc---cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHh
Q 005686 379 SNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (683)
Q Consensus 379 ~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~ 421 (683)
+..++. .+.+.+...+.+.+.++. .....+++|+.+|+.++.
T Consensus 296 ~~~f~~~y~~l~~ri~~tl~k~l~d~~-~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 296 CRKFSTSYNTLQPRITRTLLKALLDPK-KPLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHcCCC-CCcchhhHHHHHHHHhCc
Confidence 999976 456677767777776543 225569999999988864
No 174
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.26 Score=47.85 Aligned_cols=143 Identities=21% Similarity=0.215 Sum_probs=98.2
Q ss_pred cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH-
Q 005686 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD- 220 (683)
Q Consensus 142 s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~- 220 (683)
+.+...++.++.-|..+++.+.....- .--..++.++.++++++..+|..|..+++.+++..|+.-...++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl--------~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDL--------ISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhH--------hhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 457788999999999999887654221 01233455566999999999999999999999998865444333
Q ss_pred HHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcC--CChHHHHHHhhHHHHhhcc
Q 005686 221 QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD--TDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 221 ~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~--~~~~vr~~a~~~l~~l~~~ 292 (683)
..++.|+..+. +.+..+|..++.++..++.+.+.-....+. .=...+...+++ .+...+..++.++..+.+.
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 35666666554 455678899999999999887654433222 002233345555 4566677888888887665
No 175
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.72 E-value=0.3 Score=50.30 Aligned_cols=233 Identities=18% Similarity=0.209 Sum_probs=138.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh-cCCChHH----HHHHHhhh--ccCCCHHHHHHHHHHHHHHHHHhhccCCHh
Q 005686 17 ICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNN----YLAFILAR--AEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (683)
Q Consensus 17 l~~~l~~~~s~~~~~~r~~A~~~L~~~~-~~p~~~~----~l~~il~~--~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~ 89 (683)
+.+++....|+|.. .|......|..++ +.++.-. .+..++.. .+......=.-...+++..+...-..+.++
T Consensus 135 i~~Ll~l~~S~D~r-ER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 135 IKKLLELFDSPDPR-ERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHHTTTSSTHH-HHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 56677777789999 9999999998854 4554322 22222221 001111111112222333332221246678
Q ss_pred HHHHHHHHHhhhhhcC-ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcccc
Q 005686 90 NQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (683)
Q Consensus 90 ~~~~i~~~Ll~~l~~~-~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (683)
.+..+.+.|+++...+ -......+..++..++..+ +.--..++..++..---.+..-...-+.-+..+++..+...-
T Consensus 214 h~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f- 291 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEF- 291 (409)
T ss_dssp HHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHH-
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHH-
Confidence 8889989999988765 4556788899999999876 334445566666666555655555566777777776654211
Q ss_pred CCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH--HHHhccchhhHHhHHHHHHHHHhhh-CCCCHHHHHHHHHHH
Q 005686 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN--QFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAF 245 (683)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~l 245 (683)
......++..+..++.+++..|...|+..+. .++..+.......++.+++.+.... ++-+..+|..+..++
T Consensus 292 ------~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl 365 (409)
T PF01603_consen 292 ------QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVL 365 (409)
T ss_dssp ------HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2345677888888999999999999988764 2233322111222333345554433 345678999999999
Q ss_pred HHHHhhCccchhh
Q 005686 246 NLLIEVRPSFLEP 258 (683)
Q Consensus 246 ~~l~~~~~~~~~~ 258 (683)
..+.+..+..+..
T Consensus 366 ~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 366 KILMEMDPKLFDK 378 (409)
T ss_dssp HHHHTTSHHHHHH
T ss_pred HHHHHhCHHHHHH
Confidence 9999988877654
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.1 Score=57.10 Aligned_cols=207 Identities=17% Similarity=0.194 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHhc----------CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc---CCHhHHHHHHHH-
Q 005686 32 DKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS---MSPSNQQYIKSE- 97 (683)
Q Consensus 32 ~r~~A~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~---l~~~~~~~i~~~- 97 (683)
=|-.|...|..|-+ .-++.+|.+.+|++ ...+.|.. +--.|.+ +++..+..+.+.
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS---~a~ELrpi--------LVFIWAKILAvD~SCQ~dLvKe~ 554 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS---SARELRPI--------LVFIWAKILAVDPSCQADLVKEN 554 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc---chHhhhhh--------HHHHHHHHHhcCchhHHHHHhcc
Confidence 57888999988765 23677888888873 44455543 2233544 456666554443
Q ss_pred ----Hhhhhhc-C--ChHHHHHHHHHHHHHHhhcCcCCh----HHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhc
Q 005686 98 ----LLPCLGA-A--DRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQV 165 (683)
Q Consensus 98 ----Ll~~l~~-~--~~~vr~~~~~~l~~i~~~~~~~~~----~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~ 165 (683)
.++.|.. . ++.-|..++-+|+.|+.....++- .+++..-+..++++ .+-.|+=.+.||+.+-+.+.+.
T Consensus 555 g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A 634 (1387)
T KOG1517|consen 555 GYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA 634 (1387)
T ss_pred CceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh
Confidence 2233322 1 468899999999999987533322 45667666677774 6788999999999999887764
Q ss_pred cccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhH----------------HhHHHHHH----H
Q 005686 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF----------------VSMDQYLQ----G 225 (683)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~----------------~~~~~~l~----~ 225 (683)
-- .| .-......+...+.|+.++||.+|+-+|+.++....+.+. ...+.++. .
T Consensus 635 rw---~G----~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 635 RW---SG----RRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hh---cc----ccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 21 11 0123455688899999999999999999999875321110 01222222 4
Q ss_pred HHhhhCCCCHHHHHHHHHHHHHHHhhCccch
Q 005686 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (683)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (683)
+..+.+|..+-+|.++...|..++..+...+
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 5556678888888888888888776655443
No 177
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.65 E-value=0.28 Score=50.38 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc---CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCH-
Q 005686 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP- 88 (683)
Q Consensus 13 ~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~- 88 (683)
.++...+++..++..-.. -||...+...-... ..+|...+..+|+--++....-|.. -++++.+...-.+.++
T Consensus 9 ~~~s~~~if~k~Q~s~aG-hrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil--~fl~~f~~Y~~~~dpeg 85 (885)
T COG5218 9 SLESMQLIFNKIQQSSAG-HRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRIL--SFLKRFFEYDMPDDPEG 85 (885)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHH--HHHHHHHHhcCCCChhh
Confidence 445666667666655444 56555443332221 2334455555554222333333432 3455555532222221
Q ss_pred -hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcC---cCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 89 -SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 89 -~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~---~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
+....+...++..+.+++..||...+++++.+..... ..-++.++..+.+-+-+-.+.+|..|+.+|..+-+....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 2334444455555667899999999999999987642 345677888888888888899999999999776543322
Q ss_pred ccccCCCCCCcchhHhhHHHHHHhh-cCCCHHHHHHHHHHH
Q 005686 165 VLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSV 204 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~vr~~a~~~l 204 (683)
. -+.+...+...+ +||+.+||..|+-.+
T Consensus 166 e------------en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 166 E------------ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred h------------HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 1 123333344444 568999999987655
No 178
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.64 E-value=0.023 Score=49.58 Aligned_cols=129 Identities=15% Similarity=0.186 Sum_probs=77.6
Q ss_pred HHHHHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHh--ccCCccHHHHHHHHHHHHH
Q 005686 431 LSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI--LDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 431 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l--~d~~~~v~~~a~~al~~l~ 507 (683)
.+++++.+++.++ +.++.+|..+++++|.++.. .+|....+..-...- .+.+........ +.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL----------DP~~~k~~~~~~~~~~~~~~~~~~~~~~l-----~~ 72 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL----------DPYKHKSIQKSLDSKSSENSNDESTDISL-----PM 72 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc----------CcHHHhcccccCCccccccccccchhhHH-----hh
Confidence 3668888888886 45699999999999999753 222222111100000 011111111111 11
Q ss_pred HHhcccchHHHH-HHHHHHHHHHHHhhHhH-HHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCC
Q 005686 508 EEAAEELAPRLE-IILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP 576 (683)
Q Consensus 508 ~~~~~~l~~~l~-~i~~~L~~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 576 (683)
.........|++ ..+..|++.+++..... ...+++++..+....|.... +|+++++|.++..+++..
T Consensus 73 ~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv--~~L~~viP~~l~~i~~~~ 141 (160)
T PF11865_consen 73 MGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCV--PYLPQVIPIFLRVIRTCP 141 (160)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCch--hHHHHHhHHHHHHHHhCC
Confidence 111123344544 45788888888765433 33788888888888887764 899999999999988653
No 179
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.14 Score=53.52 Aligned_cols=202 Identities=16% Similarity=0.171 Sum_probs=123.4
Q ss_pred HhhccCCHhHHHHHHHHHhhhhh-----cCChHHHHHHHHHHHHHHhhc-CcCChHHH-----HHHHHHHhccCChhHHh
Q 005686 81 TAYKSMSPSNQQYIKSELLPCLG-----AADRHIRSTVGTIVSVVVQLG-GIAGWLEL-----LQALVTCLDSNDINHME 149 (683)
Q Consensus 81 ~~w~~l~~~~~~~i~~~Ll~~l~-----~~~~~vr~~~~~~l~~i~~~~-~~~~~~~l-----~~~l~~~l~s~~~~~r~ 149 (683)
+-|+..+-+..+.|-+-.++.+. -+...+-...-.+++..+..- ......++ -|.+...++..|..+|.
T Consensus 113 rAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~Vrs 192 (1005)
T KOG1949|consen 113 RAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRS 192 (1005)
T ss_pred HHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhh
Confidence 45776665566666555555432 233344444445555555332 22233333 36677788888999999
Q ss_pred HHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh----ccchhhHHhHHHHHHH
Q 005686 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM----LMPSALFVSMDQYLQG 225 (683)
Q Consensus 150 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~----~~~~~~~~~~~~~l~~ 225 (683)
.|+.++-.+.---++....+ -+++.+..-+..+...|.|+-+.||..|++-+..++. .+|+.. +..++..
T Consensus 193 nAa~lf~~~fP~~dpd~~~e---~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i---~~~ll~k 266 (1005)
T KOG1949|consen 193 NAALLFVEAFPIRDPDLHAE---EMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI---LIDLLKK 266 (1005)
T ss_pred hHHHHHHHhccCCCCCccHH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH---HHHHHHH
Confidence 99888866544333222110 1123455556678889999999999988877766553 344332 2233433
Q ss_pred HHh-hhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhh
Q 005686 226 LFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (683)
Q Consensus 226 l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 290 (683)
++. +..|...+||..+++.|..++...-.+ +.+..+++.+-..+.|..+.||..+.+.+..+-
T Consensus 267 I~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 267 ITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHhhhccchheehhHhcCcHHHHcCccch--hHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 333 334566799999999999888764332 455666665555678888889988888776653
No 180
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.61 E-value=0.11 Score=50.50 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=107.8
Q ss_pred ChhhHHHHH-HHHHHHHh-cc-hhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC-CcchhhHHHH
Q 005686 405 AWKDREAAV-LALGAIAE-GC-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH-QNGREQFEKV 480 (683)
Q Consensus 405 ~~~~r~aal-~~l~~l~~-~~-~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~ 480 (683)
.|+...+.. .++..+.. .. ...+..+.+-++|.++..++|.++.+|..++.++..+.+.++..... -......+-+
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~ 167 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVF 167 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHH
Confidence 477655322 34444333 33 34567888889999999999999999999999999999876543000 0011223444
Q ss_pred HHHHHHHhc--------cCCccHHHHHHHHHHHHHHHhc-c---cchHHHHH-HHHHHHHHHHHhhH----hHHHHHHHH
Q 005686 481 LMGLLKRIL--------DTNKRVQEAACSAFATLEEEAA-E---ELAPRLEI-ILQHLMMAFGKYQR----RNLRIVYDA 543 (683)
Q Consensus 481 l~~l~~~l~--------d~~~~v~~~a~~al~~l~~~~~-~---~l~~~l~~-i~~~L~~~l~~~~~----~~~~~~~~~ 543 (683)
.+.+..++. +.+..+-..|..|+..++.... . .-...+.. +-+.+++.+..... ......++.
T Consensus 168 ~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~ 247 (282)
T PF10521_consen 168 EDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQ 247 (282)
T ss_pred HHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHH
Confidence 455555554 4456788888999998877541 1 11122333 33334444443322 334478899
Q ss_pred HHHHHHHhccccCchhHHHhhhHHHHHHHhc
Q 005686 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (683)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 574 (683)
+..++..+|.... .|+..+++.+.+.+.+
T Consensus 248 l~~~i~~lGi~~~--~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 248 LPPIIDELGISSV--KHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHhccHHH--HHHHHHHHHHHHHhcC
Confidence 9999999998865 7999999988886654
No 181
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.067 Score=50.37 Aligned_cols=145 Identities=11% Similarity=0.194 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
...+...+..+.+.+|....-++..+..+.+..++.+.+ .+..++..+.+.+++....|..+|+-++..+++
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~--------~L~~vii~vvkslKNlRS~VsraA~~t~~difs 158 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNP--------MLHEVIIAVVKSLKNLRSAVSRAACMTLADIFS 158 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHH--------HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 344666777788899999999999999999888876543 367778888899999999999999999999998
Q ss_pred ccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhC-ccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHH
Q 005686 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (683)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 288 (683)
.....+...++.++..|+.-....+.-+|..+-.+|..++... |.. +++.+....++..+.+|..+.-++..
T Consensus 159 ~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 159 SLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhhccccc
Confidence 8877777777777766666656666778999999999888753 322 33333334556666677766655444
Q ss_pred h
Q 005686 289 Y 289 (683)
Q Consensus 289 l 289 (683)
+
T Consensus 232 ~ 232 (334)
T KOG2933|consen 232 C 232 (334)
T ss_pred c
Confidence 3
No 182
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.46 E-value=0.045 Score=60.94 Aligned_cols=176 Identities=19% Similarity=0.205 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhhcCccc---hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC
Q 005686 367 LRKCSAAALDVLSNVFGDEI---LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 443 (683)
-|+.|..+|..+++.+|+.+ +|.+...+...++...+.+ ..-...+..+..+....+..+.+ +-+.+|.+.....
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 47888899999999999854 4555555555554321111 01111122222222222233334 5567788888999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHH-HHHHHHHHHHHHhcccchHHHHHHH
Q 005686 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE-AACSAFATLEEEAAEELAPRLEIIL 522 (683)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~-~a~~al~~l~~~~~~~l~~~l~~i~ 522 (683)
+.++.+|.+|+.+++.+.+... .+.+..++..++..+.+.+.-++. .|...+..++......+.||.+-++
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~--------~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv 898 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSAT--------RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLV 898 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeeh
Confidence 9999999999999999998654 344556666666677765544444 4555556666666778889999999
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHhc
Q 005686 523 QHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (683)
Q Consensus 523 ~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (683)
.-|...+....+.++..+-++++.++...+
T Consensus 899 ~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 899 VPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 888888888877778888888888876554
No 183
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.43 E-value=0.065 Score=43.09 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=71.9
Q ss_pred hHHhHHHHHHHHHhhhCC----CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhh
Q 005686 215 LFVSMDQYLQGLFLLSND----PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (683)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 290 (683)
+.+++-.++..+-..+.| .+...++.++..+..+++..+..+....+.+...+...+..+ +++..|+++|..+.
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi 82 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHH
Confidence 344444555555554444 455678899999999999888888888888887776666544 78999999999998
Q ss_pred ccCCchhhHHhhhhhhHHHHHhhc
Q 005686 291 EAQLPHENLKEFLPRLVPVLLSNM 314 (683)
Q Consensus 291 ~~~~~~~~~~~~l~~l~~~l~~~l 314 (683)
+. ...+.+.+.+++++..+++++
T Consensus 83 ~~-L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 83 KT-LDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HH-CCHHHHHHHHHHHHHHHHHhc
Confidence 86 335678888888888877654
No 184
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.39 E-value=1.3 Score=45.74 Aligned_cols=171 Identities=18% Similarity=0.160 Sum_probs=98.8
Q ss_pred CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHH
Q 005686 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (683)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 184 (683)
.....|+.++.+............+-.++..++.+=+++...-| .+..+..++...-.. .++ | .+.+..++..
T Consensus 23 s~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dR--il~fl~~f~~Y~~~~-dpe--g--~~~V~~~~~h 95 (885)
T COG5218 23 SSAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDR--ILSFLKRFFEYDMPD-DPE--G--EELVAGTFYH 95 (885)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHH--HHHHHHHHHHhcCCC-Chh--h--hHHHHHHHHH
Confidence 34556666665554443333332233344444444443332222 233334444421111 011 1 2457778888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHH
Q 005686 185 LLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (683)
Q Consensus 185 l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (683)
++.++.+++..||..+++.+..++..+.+.-......++..+...+-|.++.||..|+.+|..+-+..... +..+..++
T Consensus 96 ~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~~~n~l 174 (885)
T COG5218 96 LLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENRIVNLL 174 (885)
T ss_pred HHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHHHHHHH
Confidence 89999999999999999999998877643222233445666777777888999999999999887543321 11112222
Q ss_pred HHHHHhhcCCChHHHHHHhhH
Q 005686 265 EYMLQVNKDTDDDVALEACEF 285 (683)
Q Consensus 265 ~~~~~~~~~~~~~vr~~a~~~ 285 (683)
..+ .-.|++.+||..|+.-
T Consensus 175 ~~~--vqnDPS~EVRr~alln 193 (885)
T COG5218 175 KDI--VQNDPSDEVRRLALLN 193 (885)
T ss_pred HHH--HhcCcHHHHHHHHHHH
Confidence 222 2357888999988754
No 185
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.36 E-value=1.3 Score=45.62 Aligned_cols=258 Identities=12% Similarity=0.070 Sum_probs=141.6
Q ss_pred CCCHHHHHHHHHHHHHHHhccchh-hHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHH
Q 005686 191 SPHTSLRKLSLGSVNQFIMLMPSA-LFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (683)
Q Consensus 191 ~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 268 (683)
++++.-...+...|..++...+.. ...+++ .++..|+..+..+|+.-|..+...+..+....+..-......+...+.
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~ 180 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFY 180 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344555556666777776553321 222333 578889999999999999999888888877655433222223333333
Q ss_pred Hhhc-CCChHHHHHHhhHHHHhhccCC--chhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCccccc
Q 005686 269 QVNK-DTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHS 345 (683)
Q Consensus 269 ~~~~-~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~ 345 (683)
.... .....-....+++++++..... ..+.-..++ ..++++......-
T Consensus 181 ~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl---~~vllPLh~~~~~-------------------------- 231 (409)
T PF01603_consen 181 RFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFL---RKVLLPLHKSPHL-------------------------- 231 (409)
T ss_dssp HHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHH---HHTTGGGGGSTGG--------------------------
T ss_pred HHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHH---HHHHHHHhcCCcH--------------------------
Confidence 3322 2223335667888888877511 111111222 2222222221100
Q ss_pred ccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-
Q 005686 346 SRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI- 424 (683)
Q Consensus 346 ~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~- 424 (683)
.........|+..+...-+ .....++..+..++-..+ ......-+.-+..+.+.++
T Consensus 232 -------------------~~y~~~L~~~~~~f~~kdp-~l~~~~i~~llk~WP~t~---s~Kev~FL~el~~il~~~~~ 288 (409)
T PF01603_consen 232 -------------------SSYHQQLSYCVVQFLEKDP-SLAEPVIKGLLKHWPKTN---SQKEVLFLNELEEILEVLPP 288 (409)
T ss_dssp -------------------GGTHHHHHHHHHHHHHH-G-GGHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHHTT--H
T ss_pred -------------------HHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCC---chhHHHHHHHHHHHHHhcCH
Confidence 0112223344444443333 233345555555554444 4555555667777777664
Q ss_pred hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHH--HHHHHhhhCCCcchhhHHHHHHHHHHHhcc-----CCccHHH
Q 005686 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF--SKFIVQDIGHQNGREQFEKVLMGLLKRILD-----TNKRVQE 497 (683)
Q Consensus 425 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-----~~~~v~~ 497 (683)
..+.+....++..+..++.++|..|..+|+.....= ...+ ..+...++|.++..+.. -+..||.
T Consensus 289 ~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li---------~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~ 359 (409)
T PF01603_consen 289 EEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI---------SQNSRVILPIIFPALYRNSKNHWNQTVRN 359 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH---------HCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH---------HhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 566778888999999999999999999887654432 2222 23345555555555543 2678999
Q ss_pred HHHHHHHHHHHH
Q 005686 498 AACSAFATLEEE 509 (683)
Q Consensus 498 ~a~~al~~l~~~ 509 (683)
.|..++..+.+.
T Consensus 360 ~a~~vl~~l~~~ 371 (409)
T PF01603_consen 360 LAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999877653
No 186
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.33 E-value=0.13 Score=54.10 Aligned_cols=188 Identities=18% Similarity=0.148 Sum_probs=122.1
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHH
Q 005686 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (683)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 300 (683)
.+++.+.+++..+|..+|...++-+..+++...... +-..|++.+..++.|.++.+|..++.++..++..-.. +.+.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~-~~Ln 406 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK-RNLN 406 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-hhhc
Confidence 468888888888899999888888777776654332 2357888888899999999999999988887765111 1111
Q ss_pred hhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 005686 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (683)
Q Consensus 301 ~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~ 380 (683)
..+++++...-. |+ +-.+|.-...|++.++.
T Consensus 407 -------~Ellr~~ar~q~-------------------------------------d~-----~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 407 -------GELLRYLARLQP-------------------------------------DE-----HGGIRTNTTICLGKIAP 437 (690)
T ss_pred -------HHHHHHHHhhCc-------------------------------------cc-----cCcccccceeeeccccc
Confidence 112222211000 00 01234444456666655
Q ss_pred hcCccchh-hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 005686 381 VFGDEILP-TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (683)
Q Consensus 381 ~~~~~~~~-~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (683)
.+...+.. .+...+...+.++- ...|.+++.++....+... ....-.+++|.+....-|++..||..|..++..
T Consensus 438 ~l~~~~R~~vL~~aftralkdpf---~paR~a~v~~l~at~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 438 HLAASVRKRVLASAFTRALKDPF---VPARKAGVLALAATQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ccchhhhccccchhhhhhhcCCC---CCchhhhhHHHhhcccccc--hhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence 54322111 22233344677776 7889999999988777653 234456688988889999999999999888887
Q ss_pred HHHHHH
Q 005686 460 FSKFIV 465 (683)
Q Consensus 460 l~~~~~ 465 (683)
+-....
T Consensus 513 fl~kl~ 518 (690)
T KOG1243|consen 513 FLEKLE 518 (690)
T ss_pred HHhhhh
Confidence 766554
No 187
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.31 E-value=1.5 Score=44.76 Aligned_cols=191 Identities=14% Similarity=0.079 Sum_probs=110.7
Q ss_pred CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhh---ccCCHh--HHHHHHHHHhhhhhcCChHHHHHHHHHHHHHH
Q 005686 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY---KSMSPS--NQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121 (683)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w---~~l~~~--~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~ 121 (683)
|.+...++.++.. ...+++.+....++-..+...- ..+.+. .....-..++..|..++..+...++.+++.++
T Consensus 52 ~~y~~~~l~ll~~--~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 52 GQYVKTFVNLLSQ--IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 6677778888875 6778888888877776664421 111000 00112234455666778899999999999998
Q ss_pred hhcCcC----ChHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhc--cccCCCCCCcchhHhhHHHHHHhhcC--C
Q 005686 122 QLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQV--LDSDVPGLAECPINIFLPRLLQFFQS--P 192 (683)
Q Consensus 122 ~~~~~~----~~~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~l~~--~ 192 (683)
...... ..+.+++.+...++++ +...+..++.++..+.+.-... +.. ...++.+...++. .
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~----------~~~v~~L~~~L~~~~~ 199 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL----------ADGVPTLVKLLSNATL 199 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH----------ccCHHHHHHHHhhccc
Confidence 764322 2233445555555543 4567778888998887643321 111 1135556666554 2
Q ss_pred CHHHHHHHHHHHHHHHhccchhhHHhH--HHHHHHHHhhhCC-CCHHHHHHHHHHHHHHHhh
Q 005686 193 HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEV 251 (683)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~ 251 (683)
+..+...++-|+..+. +.++ ....+ ..+++.+.+.+.+ ..+++..-++.+|..++..
T Consensus 200 ~~Ql~Y~~ll~lWlLS-F~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 200 GFQLQYQSIFCIWLLT-FNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred cHHHHHHHHHHHHHHh-ccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 4466777777776553 2222 11111 2456666666553 3455666666777777764
No 188
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.28 E-value=0.81 Score=45.30 Aligned_cols=185 Identities=14% Similarity=0.194 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHH-------HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC---ChHH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ-------QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---GWLE 131 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~-------~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~ 131 (683)
.-+.+.|.-++.++.+.++..-+.=..... ..+...|+.+.. ++.+--.++.++..+++.+.-. -.++
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL~~~ 164 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIILYSE 164 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHHTSG
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHhCcH
Confidence 567889998888888877654333110123 333333444443 4455556777777776653100 0012
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc
Q 005686 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 132 l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (683)
.+..+.+.++.++-++--.|+..+..+.......... ++....+.++..+..++.+++...|..+++.|+.++..-
T Consensus 165 ~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~----fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr 240 (335)
T PF08569_consen 165 CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAE----FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDR 240 (335)
T ss_dssp GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHH----HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHch
Confidence 3334667778888888778888888877654432111 012335677778888899999999999999999998542
Q ss_pred c--hhhHHhH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhC
Q 005686 212 P--SALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (683)
Q Consensus 212 ~--~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 252 (683)
+ ..+..++ +..+..+..++.|++..++-.|+.++.-++.+.
T Consensus 241 ~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 241 SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 2 1122222 245777888889999999999999998887753
No 189
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.28 E-value=0.7 Score=49.12 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=143.9
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHH--HhcCCCh--HHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCH
Q 005686 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQ--YSQFPDF--NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (683)
Q Consensus 13 ~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~--~~~~p~~--~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~ 88 (683)
...++.+.|...++.+.. +|- +...+.. +..+|.+ +.+|-.+... + +.++. .+++. +.+.|+.++.
T Consensus 237 ~p~el~~~l~k~l~~~~~-~rp-~~~~l~~~~ff~D~~~~aLrfLD~l~~k--d---n~qKs--~Flk~-Ls~~ip~fp~ 306 (700)
T KOG2137|consen 237 LPSELRESLKKLLNGDSA-VRP-TLDLLLSIPFFSDPGLKALRFLDDLPQK--D---NSQKS--SFLKG-LSKLIPTFPA 306 (700)
T ss_pred CcHHHHHHHHHHhcCCcc-cCc-chhhhhcccccCCchhhhhhhccccccc--C---cHHHH--HHHHH-HHHhhccCCH
Confidence 446788889999999999 888 4444444 2344443 3344333321 2 22222 34444 6777888776
Q ss_pred hH-HHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCC-hHHHHHHHHHHhccCC-hhHHhHHHHHHHHHHhhchhc
Q 005686 89 SN-QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG-WLELLQALVTCLDSND-INHMEGAMDALSKICEDIPQV 165 (683)
Q Consensus 89 ~~-~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~-~~~l~~~l~~~l~s~~-~~~r~~al~~l~~l~~~~~~~ 165 (683)
.. ...+...|...|... ...-..--++-.|+....... -+.++|.|...++-.+ -..+..-++=+..+.+..+.+
T Consensus 307 rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e 384 (700)
T KOG2137|consen 307 RVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE 384 (700)
T ss_pred HHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH
Confidence 43 244444444444221 111111122233333332222 3556777777666332 233333333333444444432
Q ss_pred cccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhh-hCCCCHHHHHHHHHH
Q 005686 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAA 244 (683)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~ 244 (683)
...+.++|.+...+++.+..++..+++.+..+.+.++-.+.. ..++|.+.++ +...+..++..++.|
T Consensus 385 ----------~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~vkvn~L~c 452 (700)
T KOG2137|consen 385 ----------EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYVKVNVLPC 452 (700)
T ss_pred ----------HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHHHHHHHHH
Confidence 346889999999999999999999999999999887632221 1346666654 345677899999999
Q ss_pred HHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHh
Q 005686 245 FNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (683)
Q Consensus 245 l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 289 (683)
+..+++..... .+-+.+..+.++.+..++.+....+.+...+
T Consensus 453 ~~~l~q~lD~~---~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 453 LAGLIQRLDKA---AVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred HHHHHHHHHHH---HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99998554322 1223444455666677777766666554443
No 190
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.17 E-value=0.1 Score=50.66 Aligned_cols=148 Identities=11% Similarity=0.135 Sum_probs=100.6
Q ss_pred cCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc--------CCCHHHH
Q 005686 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ--------SPHTSLR 197 (683)
Q Consensus 126 ~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--------~~~~~vr 197 (683)
...|+-++|.++..+++.++..|..|+.+|..+.+..+......++. ....+.+-+.+...+. +.+..+-
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~--tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRR--TGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH--cChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 46899999999999999999999999999999999776543000000 1123444445555554 3456777
Q ss_pred HHHHHHHHHHHhccc----hhhHHhHHHHH-HHHHhhh----CCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHH
Q 005686 198 KLSLGSVNQFIMLMP----SALFVSMDQYL-QGLFLLS----NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (683)
Q Consensus 198 ~~a~~~l~~~~~~~~----~~~~~~~~~~l-~~l~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~ 268 (683)
..+..|+..++.... ......+..++ +.++..+ +-+.+.++...++.+..+++..+.....|++.+++.+.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 888888888865421 11112222222 2233322 22357888999999999999988888899999999998
Q ss_pred HhhcCCC
Q 005686 269 QVNKDTD 275 (683)
Q Consensus 269 ~~~~~~~ 275 (683)
+.+.++.
T Consensus 272 ~~l~npf 278 (282)
T PF10521_consen 272 QILENPF 278 (282)
T ss_pred HHhcCCC
Confidence 8777653
No 191
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.16 E-value=0.092 Score=48.92 Aligned_cols=145 Identities=15% Similarity=0.273 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhh-----cC-CChHHHHHHhhHHHHhhccCCchhhHHhhhh
Q 005686 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN-----KD-TDDDVALEACEFWHSYFEAQLPHENLKEFLP 304 (683)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~-----~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~ 304 (683)
+..+...|.+++.+|.. .+-+.+++++++..+ ++ .+-.+-...+....++.++ ..-.+.||+.
T Consensus 208 dEs~~~~r~aAl~sLr~---------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N--~~iFvdPY~h 276 (450)
T COG5095 208 DESDEQTRDAALESLRN---------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKN--KYIFVDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHhcc---------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcC--CceeecHHHH
Confidence 34567788888877743 122233333333222 11 1222233344555555555 2234679999
Q ss_pred hhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc
Q 005686 305 RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (683)
Q Consensus 305 ~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~ 384 (683)
+++|.++.++.... + | + .++ +-.++.+|..|+..++.....+++
T Consensus 277 qlmPSilTcliakk-----l-------------------------g--~-~p~---dhe~~alRd~AA~ll~yV~~~F~~ 320 (450)
T COG5095 277 QLMPSILTCLIAKK-----L-------------------------G--N-VPD---DHEHYALRDVAADLLKYVFSNFSS 320 (450)
T ss_pred HHHHHHHHHHHHHH-----h-------------------------c--C-CCc---chhHHHHHHHHHHHHHHHHhhhhH
Confidence 99998877764211 0 0 0 001 123568999999999999999886
Q ss_pred ---cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc
Q 005686 385 ---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (683)
Q Consensus 385 ---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~ 423 (683)
..-|.+...+.+.+-+. .......++|+.+++.+....
T Consensus 321 ~YktLkPRvtrTllKafLD~-~k~~sT~YGalkgls~l~ke~ 361 (450)
T COG5095 321 SYKTLKPRVTRTLLKAFLDR-EKTESTQYGALKGLSILSKEV 361 (450)
T ss_pred hhhhhchHHHHHHHHHHHhc-ccccchhhhhhhhhhhhchhh
Confidence 33455655554444332 122677899999998887654
No 192
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.38 Score=50.50 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=95.7
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHH----HHhhhhhcCChHHHHHHHHHHHHHHhhc---
Q 005686 52 YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS----ELLPCLGAADRHIRSTVGTIVSVVVQLG--- 124 (683)
Q Consensus 52 ~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~----~Ll~~l~~~~~~vr~~~~~~l~~i~~~~--- 124 (683)
.++.-|. -.+-++|..|+.++-+...-.-++...+.+..+.+ .+..+|.++-+.||+.+..-+..+....
T Consensus 178 ~l~R~L~---a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 178 ILWRGLK---ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHhhc---cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3444443 56789999999998766543333444444544443 3556778899999999887777777654
Q ss_pred -CcCChHHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHH
Q 005686 125 -GIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLG 202 (683)
Q Consensus 125 -~~~~~~~l~~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~ 202 (683)
++....+++..+..-+. +....+|.+...++..+...-.. -..++.++|.+-..+.|.+..||.+++.
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s----------h~~le~~Lpal~~~l~D~se~VRvA~vd 324 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS----------HPLLEQLLPALRYSLHDNSEKVRVAFVD 324 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc----------hhHHHHHHHhcchhhhccchhHHHHHHH
Confidence 34444555555544332 33447888888888776543221 1356888888888899999999999998
Q ss_pred HHHHH
Q 005686 203 SVNQF 207 (683)
Q Consensus 203 ~l~~~ 207 (683)
.+..+
T Consensus 325 ~ll~i 329 (1005)
T KOG1949|consen 325 MLLKI 329 (1005)
T ss_pred HHHHH
Confidence 88665
No 193
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=96.05 E-value=3.2 Score=48.00 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=50.6
Q ss_pred hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHH--HHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
.++..+.+.|++.. ..+...+|-+|..++...+++ .+++.+ .++.+.+.+.+.|..+-..++.+|-.+..
T Consensus 530 NCLq~LLQ~LKS~S---LTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHS---LTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hHHHHHHHHhhhcc---eEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 57777888888776 777777888888888776542 344444 56777788888888887777777776654
No 194
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.02 E-value=0.12 Score=41.17 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=71.8
Q ss_pred hHHhHHHHHHHHHhhhCCCC----HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhh
Q 005686 215 LFVSMDQYLQGLFLLSNDPS----AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (683)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 290 (683)
+.+++-.++..+-+.+.|.+ ...++.++..+..+++..+..+....+.|.-.+...++ .++.|..|+++|..+.
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i 82 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH
Confidence 44555556666666665543 35688999999999998888888888888877776665 4569999999999988
Q ss_pred ccCCchhhHHhhhhhhHHHHHhhc
Q 005686 291 EAQLPHENLKEFLPRLVPVLLSNM 314 (683)
Q Consensus 291 ~~~~~~~~~~~~l~~l~~~l~~~l 314 (683)
.. ...+.+.+.+++++..+++++
T Consensus 83 ~~-L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 83 KT-LKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred Hh-CCHHHHHHHHHHHHHHHHHhc
Confidence 76 234668888888888776654
No 195
>PF05536 Neurochondrin: Neurochondrin
Probab=95.99 E-value=0.88 Score=48.69 Aligned_cols=245 Identities=15% Similarity=0.114 Sum_probs=139.1
Q ss_pred hHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhh--hh-hhHHHH-HHHHhhccCC-------CChhHHHHHHHHHH
Q 005686 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG--LY-PHLSEI-VAFLIPLLDD-------KFPLIRSISCWTLS 458 (683)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~--~~-~~~~~l-~~~l~~~l~d-------~~~~vr~~a~~~l~ 458 (683)
.+..+...+++.+ -..|.+++..+..+..+.... .. ..++.+ ++++-+.|.. +....+..|+..|+
T Consensus 6 ~l~~c~~lL~~~~---D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 6 SLEKCLSLLKSAD---DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHhccCC---cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 3444555666655 578999999999888865311 11 112221 2233333332 23455667888888
Q ss_pred HHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCc-cHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHhhHhH
Q 005686 459 RFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQRRN 536 (683)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~-~v~~~a~~al~~l~~~~~~~l~~~l-~~i~~~L~~~l~~~~~~~ 536 (683)
.|+.. +.. ...+-+-.-+|.+++.+...+. .+...+..+|..++. ..+.-...+ ..-++.|...+.+ +...
T Consensus 83 ~f~~~-~~~----a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~ 155 (543)
T PF05536_consen 83 AFCRD-PEL----ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQ 155 (543)
T ss_pred HHcCC-hhh----hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-Ccch
Confidence 88872 211 2345667788999999887666 888899999998883 221111111 1233344444444 3345
Q ss_pred HHHHHHHHHHHHHHhccccC--chhHHHhhhHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhcc--ccccchHHHHHHHH
Q 005686 537 LRIVYDAIGTLADAVGFELN--QPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA--GFTQFAQPVFQRCI 612 (683)
Q Consensus 537 ~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~--~f~~~~~~~~~~l~ 612 (683)
++.++..+..+....+.+.- .+..+..+++.+...+.... +...+.+++.++.+....+. .-.+.-+...+.+.
T Consensus 156 ~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~--~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~ 233 (543)
T PF05536_consen 156 MEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH--GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLR 233 (543)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHH
Confidence 56777777777666553221 12455566666665555432 33335677777777665531 12233333444444
Q ss_pred HHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccch
Q 005686 613 NIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI 655 (683)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 655 (683)
..+.+...++ ..+.-|..++.+.+.+.+..|..+
T Consensus 234 ~gl~~iL~sr---------~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 234 KGLRDILQSR---------LTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred HHHHHHHhcC---------CCHHHHHHHHHHHHHHHHHhChHh
Confidence 4444433221 234568889999999999998753
No 196
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.97 E-value=2 Score=42.80 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh---hh-hhhHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHH
Q 005686 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK---GL-YPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~---~~-~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
|.++..+..++.+.+ .....++..++|.++..-.. .+ ..++..+++.+-+ .-.|.+..++++++.+|-.+.-
T Consensus 314 p~~l~~~~sw~~S~d---~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDD---SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCc---hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 458888889998888 88899999999999875432 22 2345555655554 3346788899999998888764
Q ss_pred HHHhhhCCCcchh-hH-HHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 463 FIVQDIGHQNGRE-QF-EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 463 ~~~~~~~~~~~~~-~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
-.+ .+. +. ..+...++..++-..|+|+-.-..++.-+..
T Consensus 391 Pv~-------nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 391 PVS-------NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred cCC-------chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 322 121 22 3356677777777778888777777765543
No 197
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.82 E-value=1.6 Score=40.56 Aligned_cols=69 Identities=29% Similarity=0.326 Sum_probs=49.2
Q ss_pred cCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 005686 382 FGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (683)
Q Consensus 382 ~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (683)
+|+--.+..+|.+.+.+.+. .+++-+|..|..+||.++. ++.++.+...++|+.+.||..|..++..+-
T Consensus 211 fGQl~s~~ai~~L~k~L~d~-~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 211 FGQLQSPAAIPSLIKVLLDE-TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HhhccchhhhHHHHHHHHhh-hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 34323345566666666553 2338899999999998876 445778888899999999998887776553
No 198
>PF05536 Neurochondrin: Neurochondrin
Probab=95.80 E-value=3.4 Score=44.29 Aligned_cols=232 Identities=11% Similarity=0.054 Sum_probs=129.4
Q ss_pred CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHH----HHHhh-hhhc-------CChHHHHHHH
Q 005686 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK----SELLP-CLGA-------ADRHIRSTVG 114 (683)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~----~~Ll~-~l~~-------~~~~vr~~~~ 114 (683)
+..+..++.+|. +.+.+-|+.|..++++.+... ..+...+..|. ...+. +|.. +...-+..+.
T Consensus 4 ~~~l~~c~~lL~---~~~D~~rfagL~lvtk~~~~~--~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 4 SASLEKCLSLLK---SADDTERFAGLLLVTKLLDAD--DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred hHHHHHHHHHhc---cCCcHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 445566777776 345777777777776665321 11111111111 12222 3322 1233444555
Q ss_pred HHHHHHHhhc---CcCChHHHHHHHHHHhccCCh-hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc
Q 005686 115 TIVSVVVQLG---GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (683)
Q Consensus 115 ~~l~~i~~~~---~~~~~~~l~~~l~~~l~s~~~-~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 190 (683)
.+++.++.-. .....-+-+|.+.+.+.+.+. ....-++.+|..++..-... .. -.-.+.++.+.+.+.
T Consensus 79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~-~a-------Ll~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGA-KA-------LLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhH-HH-------HHhcCCHHHHHHHHH
Confidence 6666666532 223455668999999876665 78888999999888332211 00 001234556666665
Q ss_pred CCCHHHHHHHHHHHHHHHhccchhh----HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccc------hhhhH
Q 005686 191 SPHTSLRKLSLGSVNQFIMLMPSAL----FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF------LEPHL 260 (683)
Q Consensus 191 ~~~~~vr~~a~~~l~~~~~~~~~~~----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~l 260 (683)
+ .+.....|++.+..++...+... ...+..+++.+...........+-.++..|..+....+.. -..++
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 5 55678888888887776544211 2233345555555444444455667788888887766321 12345
Q ss_pred HHHHHHHHHhhcCC-ChHHHHHHhhHHHHhhcc
Q 005686 261 RNLFEYMLQVNKDT-DDDVALEACEFWHSYFEA 292 (683)
Q Consensus 261 ~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~ 292 (683)
..+...+...+++. .+.-|..++.....+.+.
T Consensus 230 ~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 230 SDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 56666666665543 456677777666655544
No 199
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.77 E-value=0.15 Score=39.46 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=64.9
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC
Q 005686 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (683)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (683)
+....+.+.++. ..+|.-|+..|..+.+.-. ......+.++..++..++|+++.|.-+|+.++..++...+
T Consensus 5 ~~~al~~L~dp~---~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p----- 75 (92)
T PF10363_consen 5 LQEALSDLNDPL---PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP----- 75 (92)
T ss_pred HHHHHHHccCCC---cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----
Confidence 344556677887 8899999999999988654 2334577899999999999999999999999999998765
Q ss_pred CcchhhHHHHHHHHHHHhcc
Q 005686 471 QNGREQFEKVLMGLLKRILD 490 (683)
Q Consensus 471 ~~~~~~~~~~l~~l~~~l~d 490 (683)
..+++.|++...+
T Consensus 76 -------~~vl~~L~~~y~~ 88 (92)
T PF10363_consen 76 -------DEVLPILLDEYAD 88 (92)
T ss_pred -------HHHHHHHHHHHhC
Confidence 3455556555444
No 200
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.74 E-value=2.8 Score=42.89 Aligned_cols=68 Identities=19% Similarity=0.371 Sum_probs=48.4
Q ss_pred HHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHH--HHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 434 IVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK--VLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 434 l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
++..+.+.+. +.++.+-..||.=+|.++++.+. +...+.. .=..+++.+.++++.||-.|+.|+..+.
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPR------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5556666663 45677888899999999988752 2222222 2344677788889999999999998874
No 201
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.075 Score=54.06 Aligned_cols=81 Identities=17% Similarity=0.073 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 005686 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (683)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L 525 (683)
++.||...+.+||-.|..-. . ...+..|-..+.|++.-||+.|+.+++.++-.|.+.+.|.+..|.+.+
T Consensus 599 N~hVR~g~AvaLGiacag~G--------~---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f 667 (926)
T COG5116 599 NFHVRAGVAVALGIACAGTG--------D---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKF 667 (926)
T ss_pred chhhhhhhHHHhhhhhcCCc--------c---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHH
Confidence 45566665566655554321 1 222333334456888899999999999999999999999999999999
Q ss_pred HHHHHHhhHhHH
Q 005686 526 MMAFGKYQRRNL 537 (683)
Q Consensus 526 ~~~l~~~~~~~~ 537 (683)
.+.+.+..+.-+
T Consensus 668 ~~vI~~Khe~gl 679 (926)
T COG5116 668 NRVIVDKHESGL 679 (926)
T ss_pred HHHHhhhhHhHH
Confidence 998886544433
No 202
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.31 Score=49.86 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=85.6
Q ss_pred HHHHHhh-hhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHH-hccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 005686 94 IKSELLP-CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTC-LDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (683)
Q Consensus 94 i~~~Ll~-~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~-l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (683)
+...++. ..++.+..||+++.-+++-++-.+ +++++...+. ..|.|+.+|.+...+|+..|...+.
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------- 619 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------- 619 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------
Confidence 4445666 477888999999888888777654 2333344443 4577899999999999988886664
Q ss_pred CCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCH
Q 005686 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSA 235 (683)
Q Consensus 172 ~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (683)
+..+..+-.+..|+..-||..|+-+++.+.....+.+.+....+...+...+.+..+
T Consensus 620 -------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 620 -------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred -------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 233444555667888899999999998887555555666666666666666655443
No 203
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=6.3 Score=46.11 Aligned_cols=150 Identities=13% Similarity=0.082 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhhccCCC
Q 005686 368 RKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDK 445 (683)
Q Consensus 368 r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~d~ 445 (683)
..++..|.+.++....+ ...+.++..+.....++ .+|++|.+++..+..+.-...- ......+++...+...+.|.
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~--~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~ 1581 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADS--STWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD 1581 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch
Confidence 34556666666666544 66777888777644332 2399999988877765543211 23455677888889999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccC-CccH-HHHHHHHHHHHHHHhcccchHHHHHHHH
Q 005686 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRV-QEAACSAFATLEEEAAEELAPRLEIILQ 523 (683)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~-~~~v-~~~a~~al~~l~~~~~~~l~~~l~~i~~ 523 (683)
...||..|+.+|+-+...-... ...+.........+.. ...+ .-.|..+++.++-.++-.+-.+++..+.
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~~~--------~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~ 1653 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSKFQ--------FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLM 1653 (1710)
T ss_pred HHHHHHHHHHHHHHHHhccccc--------cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHH
Confidence 8899999999998887543221 1111112222222221 2223 3456777888777665554445555544
Q ss_pred HHHH
Q 005686 524 HLMM 527 (683)
Q Consensus 524 ~L~~ 527 (683)
.+..
T Consensus 1654 ~Ls~ 1657 (1710)
T KOG1851|consen 1654 NLSS 1657 (1710)
T ss_pred HHHh
Confidence 4333
No 204
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.56 E-value=0.95 Score=48.15 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhh--c---------CChHHHHHHHHHHHHHHhhcCcCChH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG--A---------ADRHIRSTVGTIVSVVVQLGGIAGWL 130 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~--~---------~~~~vr~~~~~~l~~i~~~~~~~~~~ 130 (683)
+.+..+-..|-.+||+.-.. |++ +. +.+.|+.++. . .++.+|..+-..+..=.. .....+
T Consensus 248 d~~~~V~~~ae~~LKr~~~~-~ed--~~----~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~--Aa~~~~ 318 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS-LED--PD----LVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI--AATSFP 318 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC-CCC--HH----HHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH--HHhCCc
Confidence 56677888888888776433 543 33 3334444333 1 356666554443332211 123557
Q ss_pred HHHHHHHHHhccC--ChhHHhHHHHHH---HHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc--------CCCHHHH
Q 005686 131 ELLQALVTCLDSN--DINHMEGAMDAL---SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ--------SPHTSLR 197 (683)
Q Consensus 131 ~l~~~l~~~l~s~--~~~~r~~al~~l---~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--------~~~~~vr 197 (683)
..+..+..++.+. +...|..++.-+ ...+..++...... ..+.+...+...+. ..+...|
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~-------l~~~i~~~g~p~~~~~~~~~~~~~~~~lR 391 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKL-------LRPVILSQGWPLIQDSSSQSNSSEDIELR 391 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHH-------HHHHHHhcCccccccccccCCCcccHHHH
Confidence 7788888888877 567788888888 66666665532211 11222222233332 2467899
Q ss_pred HHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh-h--hHHHHHHHHH-HhhcC
Q 005686 198 KLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-P--HLRNLFEYML-QVNKD 273 (683)
Q Consensus 198 ~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~--~l~~l~~~~~-~~~~~ 273 (683)
..+..+++.+....|..+...+ .++..++..+.++.+++|..+-++|..++..+...-. . ........++ ....+
T Consensus 392 ~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~ 470 (501)
T PF13001_consen 392 SLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQS 470 (501)
T ss_pred HHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccc
Confidence 9999999999998887664443 5677777777888899999999999999887665433 1 1122222222 22334
Q ss_pred CChHHHHHHhhHHHHh
Q 005686 274 TDDDVALEACEFWHSY 289 (683)
Q Consensus 274 ~~~~vr~~a~~~l~~l 289 (683)
....+|..|+.+...+
T Consensus 471 ~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 471 EVRSCRYAAVKYANAC 486 (501)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4566677777665544
No 205
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.56 E-value=0.54 Score=48.78 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=48.9
Q ss_pred ccccHHHHHHHHHHHHHhhcCccchhhhHH-HHHHHHccCCCCChhhHHHHHHHHHHHHhcch
Q 005686 363 NVWNLRKCSAAALDVLSNVFGDEILPTLMP-VIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (683)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~ 424 (683)
..+.-|..++.+|+.+...+++.....+.. .+..+++++. --.|..|...+..++....
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s---a~qR~~aalvl~ewa~~~~ 158 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPS---ATQRLLAALVLEEWAKACK 158 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHhCc
Confidence 345678999999999999998876666665 6889999988 8889999999998887653
No 206
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.52 E-value=2.2 Score=40.16 Aligned_cols=188 Identities=19% Similarity=0.128 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCC-ChHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHhhccCC---HhHHHHHHHHHhhh
Q 005686 27 PSSTADKSQIWQQLQQYSQFP-DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMS---PSNQQYIKSELLPC 101 (683)
Q Consensus 27 ~~~~~~r~~A~~~L~~~~~~p-~~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~w~~l~---~~~~~~i~~~Ll~~ 101 (683)
.+++ ......+.|-.+..+. ...+..++++..- ++.....+..+..++- .-|..=+ +..+..+....++.
T Consensus 13 ~~~~-~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~----~lw~~~~r~f~~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 13 SDPE-LQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLT----LLWKANDRHFPFLQPLLLLLILRI 87 (234)
T ss_pred CChH-HHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHH----HHHHhCchHHHHHHHHHHHHHhhc
Confidence 4555 7777777777765433 4333333333211 1334444445544443 3344311 33333333333332
Q ss_pred h---hc--CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHh-ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCc
Q 005686 102 L---GA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (683)
Q Consensus 102 l---~~--~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l-~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (683)
. .+ .........+..+..+++..+. .|+++++.+..++ .+.++..+-.+++++..+|+.-.-.
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd---------- 156 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD---------- 156 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc----------
Confidence 2 12 2344555667888888887655 9999999999999 7888889999999999999532221
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc------hhhHHhHHHHHHHHHhhhCCCCH
Q 005686 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------SALFVSMDQYLQGLFLLSNDPSA 235 (683)
Q Consensus 176 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~------~~~~~~~~~~l~~l~~~~~~~~~ 235 (683)
....+..+..-+.. +.|-...+.+.+++...| +........++..+++.....+.
T Consensus 157 --~~s~w~vl~~~l~~---~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 157 --FYSAWKVLQKKLSL---DYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred --HHHHHHHHHHhcCC---ccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 23334444444422 233333333444443333 22333445678888887776553
No 207
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.52 E-value=0.21 Score=52.21 Aligned_cols=128 Identities=17% Similarity=0.183 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh--hh----hhhHHHHHHHHhhccCC
Q 005686 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK--GL----YPHLSEIVAFLIPLLDD 444 (683)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~--~~----~~~~~~l~~~l~~~l~d 444 (683)
....+..+++..|+-++. -++.+.+.+.+.. ...|-+.+-+.+.+.+...+ .+ ...+..++..+...+.|
T Consensus 282 islFl~kls~l~p~i~lr-q~~~~~~LLdses---~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D 357 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLR-QYEHFDELLDSES---FTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSD 357 (1128)
T ss_pred HHHHHHHHhhcCchHHHH-HHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhc
Confidence 445667777777764432 3456677888877 99999999999998876531 23 33566688889999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
.+|.+|..|+..+.+++..-. .....-..+.......++|.+..||..|.+.++.++-
T Consensus 358 ~~py~RtKalqv~~kifdl~s------k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 358 TYPYTRTKALQVLEKIFDLNS------KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHHHHHHHHHHHHHHhCcc------cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999876433 2233346677888889999999999999999988763
No 208
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=7.9 Score=46.31 Aligned_cols=237 Identities=12% Similarity=0.069 Sum_probs=132.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh---cCCChHH----HHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCC-H
Q 005686 17 ICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDFNN----YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS-P 88 (683)
Q Consensus 17 l~~~l~~~~s~~~~~~r~~A~~~L~~~~---~~p~~~~----~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~-~ 88 (683)
+..+...+.++++. .|=.+.+.+.++. .++.|+. +++.-+++ ..++..| .+-.+....+.++-..+. .
T Consensus 878 ~~l~~~sl~~~~p~-~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas--~~d~i~R-~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPK-LRCAAAEALARLAQVVGSAPFVASLAQNSFDKLAS--ARDPITR-TGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCChH-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh--cCCcHHH-HHHHHHHHHHHHhccCCCCc
Confidence 33444555567877 8888888877753 3555544 34444443 4455555 455555556655544443 3
Q ss_pred hHHHHHHHHHhhhhhcC-ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHH---Hhcc-C--ChhHHhHHHHHHH-----
Q 005686 89 SNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT---CLDS-N--DINHMEGAMDALS----- 156 (683)
Q Consensus 89 ~~~~~i~~~Ll~~l~~~-~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~---~l~s-~--~~~~r~~al~~l~----- 156 (683)
+....=...++..-.++ ++.|+.-.-..++.++....+-.|.-.-+.+.- ++-+ + ...++.+--+++.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 33333233333333444 668998888888888887766666544333332 2222 2 2234444445555
Q ss_pred -HHHhhchhccccCCCCCC-cchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCC
Q 005686 157 -KICEDIPQVLDSDVPGLA-ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPS 234 (683)
Q Consensus 157 -~l~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 234 (683)
.+....++++.+.....- ...-...+-...-.+.++++.+..++++|+..+.-+.|. .-++..++..++..+..+.
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~ 1111 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSY 1111 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchh
Confidence 666666666554321000 001111111122223456889999999999998877665 2345567777777766655
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhh
Q 005686 235 AEVRKLVCAAFNLLIEVRPSFLEPH 259 (683)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~ 259 (683)
--.|...+.++..++......+..|
T Consensus 1112 ~i~r~~~~~clrql~~Re~sev~e~ 1136 (2067)
T KOG1822|consen 1112 LILRRASFSCLRQLVQREASEVCEY 1136 (2067)
T ss_pred hhhhhhHHhhhhHHhHHHHHHHHHH
Confidence 5567777777777766554444333
No 209
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=95.39 E-value=1.3 Score=38.18 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=81.7
Q ss_pred HHHHHHhhhhhcC--ChHHHHHHHHHHHHHHhh---cCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHH-hhchhcc
Q 005686 93 YIKSELLPCLGAA--DRHIRSTVGTIVSVVVQL---GGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC-EDIPQVL 166 (683)
Q Consensus 93 ~i~~~Ll~~l~~~--~~~vr~~~~~~l~~i~~~---~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~-~~~~~~~ 166 (683)
.|++.|+.+|.+. +...-+.+++++..++.. ...+.|+++.+.+.... .+++ ..|+.++..+. ...++++
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 4788889988642 333444455555555533 25789999997777655 2232 45666666665 3334333
Q ss_pred ccCCCCCCcchhHhhHHHHHHhhcCCC---HHHHHHHHHH-HHHHHhccch-----hhHHhHHHHHHHHHhhhCCCCH-H
Q 005686 167 DSDVPGLAECPINIFLPRLLQFFQSPH---TSLRKLSLGS-VNQFIMLMPS-----ALFVSMDQYLQGLFLLSNDPSA-E 236 (683)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~~l~~~~---~~vr~~a~~~-l~~~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~-~ 236 (683)
. +.++.++|.+.+.|.+|. .+....|+.. +...+..... .+.+.+..++..+..+.+.+.+ .
T Consensus 79 ~--------~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 79 I--------PFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVG 150 (174)
T ss_pred H--------HHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 2 457889999999998873 2323344432 2333333221 1222233344455555555544 5
Q ss_pred HHHHHHHHHHHHHhh
Q 005686 237 VRKLVCAAFNLLIEV 251 (683)
Q Consensus 237 ~~~~~~~~l~~l~~~ 251 (683)
....+++-+..++..
T Consensus 151 ~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 151 FLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655543
No 210
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.38 E-value=0.18 Score=40.60 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHHHHhcc----CCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q 005686 474 REQFEKVLMGLLKRILD----TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (683)
Q Consensus 474 ~~~~~~~l~~l~~~l~d----~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (683)
++++-.++..+-..++| ....-+..+..+|+.+++.++..+.++.++|+..|...+... +-...+++|-..++.
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 45556666667666766 235678899999999999888899999999988888887764 344588999999999
Q ss_pred HhccccCchhHHHhhhHHHHHHH
Q 005686 550 AVGFELNQPVYLDILMPPLIAKW 572 (683)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~~~ 572 (683)
.++.+-.. +++++++-.++..|
T Consensus 84 ~L~~~~l~-~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 84 TLDEEDLG-PLLDQIFAILLPLW 105 (107)
T ss_pred HCCHHHHH-HHHHHHHHHHHHhc
Confidence 88754322 46666665555544
No 211
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.35 E-value=4.5 Score=42.68 Aligned_cols=292 Identities=13% Similarity=0.066 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHH
Q 005686 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (683)
Q Consensus 108 ~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 186 (683)
.-|-.++.-++..++.......+++......++..+ ..+.|.+++..+..+++.-....... -..++..+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~--------R~~fF~~I~ 76 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLM--------RAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHH--------HHHHHHHHh
Confidence 346666777777776665566666666666666654 34699999999999998765421110 122222222
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhcc---chhhHHhHHHHHHHHHhhh-------C-------------CCCHHHHHHHHH
Q 005686 187 QFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLS-------N-------------DPSAEVRKLVCA 243 (683)
Q Consensus 187 ~~l~~~~~~vr~~a~~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~-------~-------------~~~~~~~~~~~~ 243 (683)
..-.+++-..|..|+.+|..=...+ ...+.+.+..+++.+++.. . +.+...-...+.
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 156 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQ 156 (464)
T ss_pred cCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHH
Confidence 2222234567888888776544333 2334455555555555210 0 112334456677
Q ss_pred HHHHHHhhCccchh-hhHHHHHHHHHHhh-cCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhh
Q 005686 244 AFNLLIEVRPSFLE-PHLRNLFEYMLQVN-KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (683)
Q Consensus 244 ~l~~l~~~~~~~~~-~~l~~l~~~~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~ 321 (683)
.+..++......+. ..+..++..+...+ +...++.-..++.++.++......+. ..+..++..|-......
T Consensus 157 ~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~---~sl~~~i~vLCsi~~~~---- 229 (464)
T PF11864_consen 157 FLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPS---ESLSPCIEVLCSIVNSV---- 229 (464)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCCh---HHHHHHHHHHhhHhccc----
Confidence 77777776666554 45666666655554 33344444778888888776522211 22333333332211100
Q ss_pred hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccC
Q 005686 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS 401 (683)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 401 (683)
+....+.+++..|.+ ...-...+..+...+.++
T Consensus 230 --------------------------------------------~l~~~~w~~m~nL~~---S~~g~~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 230 --------------------------------------------SLCKPSWRTMRNLLK---SHLGHSAIRTLCDILRSP 262 (464)
T ss_pred --------------------------------------------ccchhHHHHHHHHHc---CccHHHHHHHHHHHHccc
Confidence 122334445555543 222234445555555222
Q ss_pred C---CCChhhHHHHHHHHHHHHhcchhhhhh--hHH--HHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 005686 402 G---DEAWKDREAAVLALGAIAEGCIKGLYP--HLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (683)
Q Consensus 402 ~---~~~~~~r~aal~~l~~l~~~~~~~~~~--~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (683)
+ ..+...-.+|+..++.+.-+.++.-.+ .+. .+++.+...++..++.|-.....++.++.
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 1 122666678999998877766322111 122 38899999999888888777777776666
No 212
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=1.4 Score=51.21 Aligned_cols=237 Identities=16% Similarity=0.086 Sum_probs=139.7
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc-hhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
+.-+..+++-+.-.|+..+..|+..+..++.... +.....++.+...+.++..|.+..||....+++..++....+.+.
T Consensus 40 dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 40 DSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445567777888899999999999999886533 223333555566666778889999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhc-ccChhhhhhhhhcccCCCCCcc
Q 005686 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM-IYADDDESLVEAEEDESLPDRD 336 (683)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l-~~~~~d~~~~~~~~~e~~~~~~ 336 (683)
||++.+++..+....+.+..|-..|...+...-.....++...-.-+.+.+.+...+ ..+++++......
T Consensus 120 p~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~--------- 190 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTL--------- 190 (1312)
T ss_pred HHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhc---------
Confidence 999999999888777777777777766555443321112222222233444443332 1122111100000
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhh---------HHHHHHHHccCCCCCh
Q 005686 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTL---------MPVIQAKLSASGDEAW 406 (683)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l---------~~~l~~~l~~~~~~~~ 406 (683)
..++.+....++-..+..++..+....|. +-+... -+.+-..+++.. +
T Consensus 191 -------------------s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~---~ 248 (1312)
T KOG0803|consen 191 -------------------SSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKS---P 248 (1312)
T ss_pred -------------------chHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCC---c
Confidence 00000111112223344445555544443 111111 122334445555 7
Q ss_pred hhHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHhhccCCCC
Q 005686 407 KDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKF 446 (683)
Q Consensus 407 ~~r~aal~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~d~~ 446 (683)
.+|.+...++..+....... +......+-+.+.....+.+
T Consensus 249 ~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 249 SIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred chhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc
Confidence 88999999888888877554 33444556667777776655
No 213
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.51 Score=46.59 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=106.8
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCC
Q 005686 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQ 471 (683)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 471 (683)
..+...++..+ .++|..|+..+..+....+..+..+.-.+++.+...+.|.+..||.....++..+.......
T Consensus 61 keLl~qlkHhN---akvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e---- 133 (393)
T KOG2149|consen 61 KELLSQLKHHN---AKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKE---- 133 (393)
T ss_pred HHHHhhhcCch---HhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchh----
Confidence 33444555666 89999999999888877666666677788888999999999999999998888877655432
Q ss_pred cchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Q 005686 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (683)
Q Consensus 472 ~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~ 532 (683)
...+++.-+++.+...|....+.+|..+...+..+++.+++.+..+...++..+...++..
T Consensus 134 ~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~ 194 (393)
T KOG2149|consen 134 DQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKL 194 (393)
T ss_pred hhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888888789999999999999999998887777777777777666654
No 214
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.38 Score=47.41 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=94.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhh-CccchhhhH
Q 005686 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHL 260 (683)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l 260 (683)
+..++.-+.+.+..+|..|+..+..+....|..+..++..+++.+.....|.+..+|...++.+..++.. .+..+.+++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4456777889999999999999999987777777777778889898888999999999999999886653 444578999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 261 ~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
.-+++++...|.+..+++|..++.++.-+++.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999888775
No 215
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.30 E-value=0.2 Score=40.01 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHhccCC--c--cHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q 005686 474 REQFEKVLMGLLKRILDTN--K--RVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (683)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~--~--~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (683)
.+++-.++..+-..++|.+ . .-|..+..+|+.+++.++..+..+.++|+-.|...++.. +-+..+++|-..++.
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~ 83 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHH
Confidence 4566677777777777754 3 348899999999999989999999999999998888753 344589999999999
Q ss_pred HhccccCchhHHHhhhHHHHHHH
Q 005686 550 AVGFELNQPVYLDILMPPLIAKW 572 (683)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~~~ 572 (683)
.+..+-.. +.+++++..+...|
T Consensus 84 ~L~~~~l~-~ll~~~~~~i~~~~ 105 (107)
T smart00802 84 TLKEEELG-PLLDQIFAAILPLW 105 (107)
T ss_pred hCCHHHHH-HHHHHHHHHHHHhc
Confidence 88754221 35555555555444
No 216
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=13 Score=47.56 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=99.9
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 005686 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 131 ~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (683)
-+++.|.+++...+...+.++..++..+.......+.+...+..-+....+++.++...-++.+.-|...+..+..+++.
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 35788899999889999999999999887766554443222221245677888888888888888888777777777776
Q ss_pred cch-hhHHhHHHHHHHHHhhhCCCCHHHH----HHHHHHHHHHHh---hC--ccchh-hhHHHHHHHHHHhhcCCChHHH
Q 005686 211 MPS-ALFVSMDQYLQGLFLLSNDPSAEVR----KLVCAAFNLLIE---VR--PSFLE-PHLRNLFEYMLQVNKDTDDDVA 279 (683)
Q Consensus 211 ~~~-~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~l~~l~~---~~--~~~~~-~~l~~l~~~~~~~~~~~~~~vr 279 (683)
+|. .+.+....+++.++..+.+-..++. ..+-.++..+.. .. ...-. .....++..+...+.+++..||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 663 2334444566666655443221111 122222222221 11 01111 2234455555556677788999
Q ss_pred HHHhhHHHHhhcc
Q 005686 280 LEACEFWHSYFEA 292 (683)
Q Consensus 280 ~~a~~~l~~l~~~ 292 (683)
..+...+..+.+.
T Consensus 1144 ~~~~~~L~~i~~~ 1156 (3550)
T KOG0889|consen 1144 EFSQKLLRLISEL 1156 (3550)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888776
No 217
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.20 E-value=0.2 Score=38.81 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=62.2
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc
Q 005686 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 132 l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (683)
-+...+..+.|+.+.+|-.|+..|+.+++.-... ....+.++..++..++|+++-|-..|++++..++...
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~---------~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEP---------VIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcc---------hhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 4566777788899999999999999999876611 1235788999999999999999999999999999887
Q ss_pred chhhH
Q 005686 212 PSALF 216 (683)
Q Consensus 212 ~~~~~ 216 (683)
|..+.
T Consensus 75 p~~vl 79 (92)
T PF10363_consen 75 PDEVL 79 (92)
T ss_pred hHHHH
Confidence 65443
No 218
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.11 Score=45.93 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH---hcc
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA---VGF 553 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~---~~~ 553 (683)
+...++.++..|.+.+...+-.|-..+..++...++.+.|.++.++..|...+...+.++...++.+|..++.. +|.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 35567777788888788889999999999999999999999999999999999998888877777777766654 566
Q ss_pred ccCchhHHHhhhHHHHHHHhc
Q 005686 554 ELNQPVYLDILMPPLIAKWQQ 574 (683)
Q Consensus 554 ~~~~~~~~~~~~~~l~~~~~~ 574 (683)
.+. ||+.+++|.+ ..+++
T Consensus 192 aLV--PfYRQlLp~~-n~~k~ 209 (262)
T KOG3961|consen 192 ALV--PFYRQLLPVL-NTFKN 209 (262)
T ss_pred hhh--hHHHHhhhhh-hhhcc
Confidence 766 8999999866 44554
No 219
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.03 E-value=0.28 Score=42.65 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=83.2
Q ss_pred hhhhHHHHHHHHhhccC------------------CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHh
Q 005686 427 LYPHLSEIVAFLIPLLD------------------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (683)
Q Consensus 427 ~~~~~~~l~~~l~~~l~------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l 488 (683)
+.+++++++|.+..... |.--.+|.+|..++-.+...+.. .-.+..++..+..++
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~-------~~~~~~~~~~v~~GL 75 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS-------RIDISEFLDRVEAGL 75 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS-------SS-HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHhhc
Confidence 35677888888876654 12258999999999998875542 223667788889999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh-------h-----HhHHHHHHHHHHHHHHHhc
Q 005686 489 LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY-------Q-----RRNLRIVYDAIGTLADAVG 552 (683)
Q Consensus 489 ~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~-------~-----~~~~~~~~~~l~~l~~~~~ 552 (683)
.| +..++.-+...+.+++...+..+.+.++.+++.+...++.. + .+..+.++.++..+...++
T Consensus 76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99 89999999999999998888887777888888877777532 1 1234467777777655543
No 220
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.03 E-value=5.3 Score=42.84 Aligned_cols=127 Identities=16% Similarity=0.146 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhc-cCCC
Q 005686 368 RKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL-LDDK 445 (683)
Q Consensus 368 r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~d~ 445 (683)
+-...+-++.|.+..+. ++...++|.+...+++.+ ....+.++..+..+++...-.+ .-..++|.+.+. ++..
T Consensus 367 ~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~---~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 367 LLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSD---VQIQELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTT 441 (700)
T ss_pred hhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcc---hhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhccc
Confidence 33445556667777765 788899999999999888 8999999999999998775211 123367776665 4578
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
+..|+..++-|++.+.+.+.. ...++.+.+ ++++.+..++.+..........+.
T Consensus 442 ~~~vkvn~L~c~~~l~q~lD~-------~~v~d~~lp-i~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLIQRLDK-------AAVLDELLP-ILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HHhHHHHHH-HHHHhcCCCcHHHHHHHHHHHHHH
Confidence 899999999999999976642 233444444 556666666777666555555544
No 221
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=6.4 Score=42.58 Aligned_cols=186 Identities=16% Similarity=0.137 Sum_probs=115.0
Q ss_pred CChHHHHHHHHHHHHHHhhc----CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh--ccccCC--CCCCcc
Q 005686 105 ADRHIRSTVGTIVSVVVQLG----GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ--VLDSDV--PGLAEC 176 (683)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~----~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~--~~~~~~--~~~~~~ 176 (683)
+=..=|+.|+..+..+++.+ +....+.++..|..-- .|+.....++..+..+...-.. ...... ..+...
T Consensus 35 TL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~--~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~ 112 (970)
T KOG0946|consen 35 TLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDY--MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLW 112 (970)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhcc--CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHH
Confidence 34455888888888888764 2334444444443321 3566777777777777654321 111100 000000
Q ss_pred ------hhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH---HHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q 005686 177 ------PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM---DQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (683)
Q Consensus 177 ------~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (683)
.-.+.+..++.++..-+..||..+++.+..++..-|..+.+.+ +.-+..+...+.|..+.+|..++-.|..
T Consensus 113 iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~e 192 (970)
T KOG0946|consen 113 IAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSE 192 (970)
T ss_pred HHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHH
Confidence 0134566778888888999999999999999988876655433 3445667777788888999999999999
Q ss_pred HHhhCccchhh-hHHHHHHHHHHhhcC----CChHHHHHHhhHHHHhhcc
Q 005686 248 LIEVRPSFLEP-HLRNLFEYMLQVNKD----TDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 248 l~~~~~~~~~~-~l~~l~~~~~~~~~~----~~~~vr~~a~~~l~~l~~~ 292 (683)
++..++..-+- ....+++-++..... ...-|...|+.++..+.+.
T Consensus 193 L~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 193 LVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 99877643110 112333334333321 2234677888888888776
No 222
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.96 E-value=1.7 Score=48.20 Aligned_cols=144 Identities=17% Similarity=0.097 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcc----CChhHHhHHHHHHHHHHhhchhcc------ccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHH
Q 005686 130 LELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVL------DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKL 199 (683)
Q Consensus 130 ~~l~~~l~~~l~s----~~~~~r~~al~~l~~l~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~ 199 (683)
.+++..+..++.+ .++..+..++.+++.++..+-..- ........+.+.+.+.+.+.......+...+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 5667777666653 356788899999999887644331 111111112334444444555555678889999
Q ss_pred HHHHHHHHHhccchhhHHhHHHHHHHHHhhhCC---CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCCh
Q 005686 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND---PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDD 276 (683)
Q Consensus 200 a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 276 (683)
++++|+.+... ..++.+...+.+ ....+|..|+.+|..++...+..+.+.+-.|+. ....+.
T Consensus 510 ~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~-----n~~e~~ 574 (618)
T PF01347_consen 510 YLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFM-----NTTEDP 574 (618)
T ss_dssp HHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH------TTS-H
T ss_pred HHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhc-----CCCCCh
Confidence 99999988521 123444444333 356789999999988877776554432222221 233467
Q ss_pred HHHHHHhhHHHH
Q 005686 277 DVALEACEFWHS 288 (683)
Q Consensus 277 ~vr~~a~~~l~~ 288 (683)
++|..|+..+..
T Consensus 575 EvRiaA~~~lm~ 586 (618)
T PF01347_consen 575 EVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 799999865544
No 223
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.73 E-value=0.48 Score=47.40 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHcc----CCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc----------CCCChhHHHH
Q 005686 387 LPTLMPVIQAKLSA----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL----------DDKFPLIRSI 452 (683)
Q Consensus 387 ~~~l~~~l~~~l~~----~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l----------~d~~~~vr~~ 452 (683)
+..++|++..++.+ ...+++..-...+..+.++...-.=.+.+|+.+++|.++.++ .+.++.+|..
T Consensus 208 l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 208 LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 33455555544443 211125555555666666666544456899999999988776 2467899999
Q ss_pred HHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCcc--HHHHHHHHHHHH
Q 005686 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR--VQEAACSAFATL 506 (683)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~--v~~~a~~al~~l 506 (683)
|+..++.++..+... .....+.++..+.+.+.|+... .+-.|+.+|..+
T Consensus 288 AA~ll~~i~~~f~~~-----y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTS-----YNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCC-----CCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999999988643 3345677888888888876532 244555555443
No 224
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.59 E-value=4.9 Score=39.26 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHH
Q 005686 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (683)
Q Consensus 106 ~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l 185 (683)
++.-|+..+.+-..+...+...+|.+++..+.++.+. +. ...... +.+ +.-..+...+
T Consensus 2 d~k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~------------lq---~~~~~~--~~I-----P~k~~v~krL 59 (307)
T PF04118_consen 2 DSKYKKYNAEVEKALKSFESSSEWADYISFLGKLLKA------------LQ---NSNNQF--PYI-----PHKLQVSKRL 59 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH------------Hh---ccCCCC--cee-----CcHHHHHHHH
Confidence 3455666666666666667788999988777654421 11 000000 011 1123455567
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHHHhccc-hhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHH
Q 005686 186 LQFFQSP-HTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (683)
Q Consensus 186 ~~~l~~~-~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l 263 (683)
.++|.-. -..|-..|+++...+++.++ +.+...+.-+.+.++.++......||...++.+....-.-+..+.+.++.+
T Consensus 60 aqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~l 139 (307)
T PF04118_consen 60 AQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGL 139 (307)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 7777654 34799999999999998765 456677777889999988877788888888777766655555777777777
Q ss_pred HHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 264 FEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 264 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
+-.++-+++++..+....++..+..+...
T Consensus 140 i~slLpGLede~sE~~~~~~~ll~~l~~~ 168 (307)
T PF04118_consen 140 ILSLLPGLEDEGSEFFDRTLKLLDKLKEA 168 (307)
T ss_pred HHHhccccccCCchHHHHHHHHHHHHHHh
Confidence 77777777777777777777777776554
No 225
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.58 E-value=3.9 Score=38.07 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (683)
-..|+.+++.|..... +.-+..+...+.+++...|..+..++|++..- ..+|.|.
T Consensus 170 l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~---------------~ai~~L~ 224 (289)
T KOG0567|consen 170 LFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP---------------AAIPSLI 224 (289)
T ss_pred HHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch---------------hhhHHHH
Confidence 4567777777766543 22355677788888888888888888888542 2244455
Q ss_pred HHhccC--CccHHHHHHHHHHHHHH
Q 005686 486 KRILDT--NKRVQEAACSAFATLEE 508 (683)
Q Consensus 486 ~~l~d~--~~~v~~~a~~al~~l~~ 508 (683)
+.|.|. ++-||-.|+.||+.+..
T Consensus 225 k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 225 KVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred HHHHhhhcchHHHHHHHHHHHhhcC
Confidence 555543 57788888888887764
No 226
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.58 E-value=2.8 Score=41.61 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHHHHhhcCc--cchhhhHHH----HHHHHccCCCCChhhHHHHH-HHHHHHHhcchhhhhhhHHHHH---
Q 005686 366 NLRKCSAAALDVLSNVFGD--EILPTLMPV----IQAKLSASGDEAWKDREAAV-LALGAIAEGCIKGLYPHLSEIV--- 435 (683)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~--~~~~~l~~~----l~~~l~~~~~~~~~~r~aal-~~l~~l~~~~~~~~~~~~~~l~--- 435 (683)
.+|+.....+.......++ .+...++|. +..-.++.. +..|++-. .+++.+....++.+.+.++.++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~---p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSV---PDAREPEVLSLMATIINKLGELIQPQVPQILEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS----GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCC---ccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3566666666666666653 333333333 322333344 66777644 4555666666555555555544
Q ss_pred -HHHhhccCC---CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc
Q 005686 436 -AFLIPLLDD---KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (683)
Q Consensus 436 -~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (683)
...+..+.+ ..|..|..-...+..+.+.+...+- ......+..++..+.-+++.++..|...++.++..+++...
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~-~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALL-QLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHH-HS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHH-cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 444444542 4699999999999999887643210 01345678888888888999999999999999999998874
Q ss_pred c---c-----chHHHHHHHHHHHHHHHHh
Q 005686 512 E---E-----LAPRLEIILQHLMMAFGKY 532 (683)
Q Consensus 512 ~---~-----l~~~l~~i~~~L~~~l~~~ 532 (683)
. . .+.|+-.+++.+...+.+.
T Consensus 198 ~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 198 KTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp H-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3 1 2335555555555555544
No 227
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.55 E-value=8.7 Score=42.57 Aligned_cols=119 Identities=15% Similarity=0.100 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHHHHHHhhc--C-----------cCC----hHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccc
Q 005686 105 ADRHIRSTVGTIVSVVVQLG--G-----------IAG----WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (683)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~--~-----------~~~----~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~ 167 (683)
.++.++..+...++.++... . ... .+.+...+....+..+...+..++.+|+.+-.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 46778888888888887653 1 111 13334444444455677888899999987532
Q ss_pred cCCCCCCcchhHhhHHHHHHhhcCC---CHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 005686 168 SDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (683)
Q Consensus 168 ~~~~~~~~~~~~~i~~~l~~~l~~~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (683)
...++.+...+.+. ...+|.+|+.+|..+....|....+.+ ++.+.+. ..+.++|.+|+..
T Consensus 520 -----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l---~~I~~n~--~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 520 -----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL---LPIFMNT--TEDPEVRIAAYLI 583 (618)
T ss_dssp -----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH---HHHHH-T--TS-HHHHHHHHHH
T ss_pred -----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH---HHHhcCC--CCChhHHHHHHHH
Confidence 34566677776665 679999999999988766554443332 4444443 2356789888755
Q ss_pred HH
Q 005686 245 FN 246 (683)
Q Consensus 245 l~ 246 (683)
|.
T Consensus 584 lm 585 (618)
T PF01347_consen 584 LM 585 (618)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 228
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.44 E-value=5.6 Score=42.28 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=88.4
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhchhc--cccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 005686 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQV--LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 133 ~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (683)
+..+..+++++....|-+.+++++.++...... +..++ .+.+..++..+.+-+.|..|.+|..|++.+..+++.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~----~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl 376 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHY----KQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDL 376 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhH----HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhC
Confidence 566777888888899999999999998876531 22222 234677888888889999999999999999999876
Q ss_pred cchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc
Q 005686 211 MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 211 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (683)
....... -..+...+...++|...-||..+++.+..+.-..|
T Consensus 377 ~sk~~~~-r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 377 NSKTVGR-RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cccccch-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 4332221 22456777777889999999999999998877665
No 229
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.27 E-value=3.2 Score=41.25 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=106.7
Q ss_pred CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc------CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHH
Q 005686 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVV 120 (683)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~------l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i 120 (683)
+.+...++.+|... +.++++.+....++-..+...-.. .........-..++..+..++..++..++.+++.+
T Consensus 54 ~~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 54 DQYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp --------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45555666777642 368888888888888776543211 01101111334566677778999999999999999
Q ss_pred HhhcCcCChH---HHHHHHHHHhcc----CChhHHhHHHHHHHHHHhhchh--ccccCCCCCCcchhHhhHHHHHHhh--
Q 005686 121 VQLGGIAGWL---ELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQ--VLDSDVPGLAECPINIFLPRLLQFF-- 189 (683)
Q Consensus 121 ~~~~~~~~~~---~l~~~l~~~l~s----~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~~l-- 189 (683)
+.......-. +.++.+.+.+.+ ++.+.+..++.+|..+.+.-.. .+. -...++.+...+
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~----------~~~~v~~l~~iL~~ 202 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW----------KSNGVSPLFDILRK 202 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH----------THHHHHHHHHHHH-
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH----------hcCcHHHHHHHHHh
Confidence 9887554444 677777777654 3445678899999998754332 111 145566666666
Q ss_pred ---cC--CCHHHHHHHHHHHHHHHhccchhhHHhH--HHHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCccc
Q 005686 190 ---QS--PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSF 255 (683)
Q Consensus 190 ---~~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~ 255 (683)
.+ .+..+...++-|+..+. +.++. ...+ ..+++.+...+. ...+++..-++.+|..+++..++.
T Consensus 203 ~~~~~~~~~~Ql~Y~~ll~lWlLS-F~~~~-~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 203 QATNSNSSGIQLQYQALLCLWLLS-FEPEI-AEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp --------HHHHHHHHHHHHHHHT-TSHHH-HHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT
T ss_pred hcccCCCCchhHHHHHHHHHHHHh-cCHHH-HHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH
Confidence 22 34466677777776653 22211 1111 115666666554 345677777788888888776653
No 230
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.26 E-value=2.6 Score=41.86 Aligned_cols=181 Identities=15% Similarity=0.071 Sum_probs=96.0
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhh----hhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhC
Q 005686 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY----PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (683)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (683)
+...+..++ +.....++..++.+....+.... ..+..++..+...++.++..++..|+.+++.+...-.-
T Consensus 110 fl~ll~~~D---~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~--- 183 (312)
T PF03224_consen 110 FLKLLDRND---SFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY--- 183 (312)
T ss_dssp HHHH-S-SS---HHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH---
T ss_pred HHHHhcCCC---HHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh---
Confidence 334777777 99999999999999887654332 34555555555555555666778888888888743211
Q ss_pred CCcchhhH-HHHHHHHHHHh-----ccCC--ccHHHHHHHHHHHHH--HHhcccc-hHHHHHHHHHHHHHHHHh-hHhHH
Q 005686 470 HQNGREQF-EKVLMGLLKRI-----LDTN--KRVQEAACSAFATLE--EEAAEEL-APRLEIILQHLMMAFGKY-QRRNL 537 (683)
Q Consensus 470 ~~~~~~~~-~~~l~~l~~~l-----~d~~--~~v~~~a~~al~~l~--~~~~~~l-~~~l~~i~~~L~~~l~~~-~~~~~ 537 (683)
...+. ...++.+...+ .+.. ..++-.++.++.-+. ...-+.+ ..+ +++.|...++.. .+++.
T Consensus 184 ---R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvv 257 (312)
T PF03224_consen 184 ---RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVV 257 (312)
T ss_dssp ---HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHH
T ss_pred ---HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHH
Confidence 11111 45566666666 2222 344555555555332 2222222 223 667777777654 45778
Q ss_pred HHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcchhhHHh
Q 005686 538 RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLE 587 (683)
Q Consensus 538 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 587 (683)
+.++.++-+++......+. +.++..=++.+++.+..-+..|.++..-++
T Consensus 258 Rv~la~l~Nl~~~~~~~~~-~~mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 258 RVSLAILRNLLSKAPKSNI-ELMVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HHHHHHHHHTTSSSSTTHH-HHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHH-HHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 8888899888876543332 234443344455555544445666544333
No 231
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.21 E-value=3.9 Score=44.74 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=80.6
Q ss_pred CCChHHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHHHhhccCC-------HhHHHHHHHHHhhhhhcCChHHHHHHHHHH
Q 005686 46 FPDFNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYKSMS-------PSNQQYIKSELLPCLGAADRHIRSTVGTIV 117 (683)
Q Consensus 46 ~p~~~~~l~~il~~~~-~~~~~~R~~a~~~l~~~i~~~w~~l~-------~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l 117 (683)
+++.+..+.+++.+.. ...+.+|..|.+.+...+.+.-..-+ .+..+.+.+.|-.+..+.+...+..+..+|
T Consensus 391 t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 391 TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 4456777787776421 34667888888888877765433221 223333333333344334444444445555
Q ss_pred HHHHhhcCcCChHHHHHHHHHHhc---cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC--C
Q 005686 118 SVVVQLGGIAGWLELLQALVTCLD---SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--P 192 (683)
Q Consensus 118 ~~i~~~~~~~~~~~l~~~l~~~l~---s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~ 192 (683)
|.+.. +..++.+...+. .....+|..|+.+|..+.+..+. .+-+.++..+.+ .
T Consensus 471 GN~g~-------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~---------------~v~~~l~~i~~n~~e 528 (574)
T smart00638 471 GNAGH-------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR---------------KVQEVLLPIYLNRAE 528 (574)
T ss_pred hccCC-------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch---------------HHHHHHHHHHcCCCC
Confidence 54332 344444444443 23457899999999988775553 233445666655 4
Q ss_pred CHHHHHHHHHHHHH
Q 005686 193 HTSLRKLSLGSVNQ 206 (683)
Q Consensus 193 ~~~vr~~a~~~l~~ 206 (683)
++++|.+|+..+-.
T Consensus 529 ~~EvRiaA~~~lm~ 542 (574)
T smart00638 529 PPEVRMAAVLVLME 542 (574)
T ss_pred ChHHHHHHHHHHHh
Confidence 67899999777644
No 232
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=5.7 Score=38.37 Aligned_cols=310 Identities=11% Similarity=0.137 Sum_probs=169.6
Q ss_pred CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC--CCHHHHHHHHHHH
Q 005686 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSV 204 (683)
Q Consensus 127 ~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~vr~~a~~~l 204 (683)
+..+-++-... +..+++......++.++..+...-+..+.. .-+..++..|.+ .+.++-...+.++
T Consensus 104 ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da-----------~g~~vvv~lL~~~~~~~dlt~~~~~~v 171 (461)
T KOG4199|consen 104 GAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDA-----------EAMAVVLKLLALKVESEEVTLLTLQWL 171 (461)
T ss_pred CCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhcc-----------ccHHHHHHHHhcccchHHHHHHHHHHH
Confidence 44444444444 466778888889999999888877766542 224445566554 4667888888877
Q ss_pred HHHHhccchhhHHhHH-HHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCcc-----chhhhHHHH-----HHHHHHhhc
Q 005686 205 NQFIMLMPSALFVSMD-QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPS-----FLEPHLRNL-----FEYMLQVNK 272 (683)
Q Consensus 205 ~~~~~~~~~~~~~~~~-~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~-----~~~~~l~~l-----~~~~~~~~~ 272 (683)
..-+-.....-...++ .+++.+...+. ....++...++.++..+.....- ....|-..| +..+.+.++
T Consensus 172 ~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~ 251 (461)
T KOG4199|consen 172 QKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQ 251 (461)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHH
Confidence 6554322111112222 34555554443 33335556677777666532211 111232222 222333322
Q ss_pred -CCChHHHHHHhhHHHHhhccCCchhhHHhhhh-hhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCC
Q 005686 273 -DTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHG 350 (683)
Q Consensus 273 -~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (683)
..++++-..++..+..++-.. +..+...+ .=+..++..+.++.++
T Consensus 252 A~~dp~~L~~l~~tl~~lAVr~---E~C~~I~e~GGl~tl~~~i~d~n~~------------------------------ 298 (461)
T KOG4199|consen 252 AGIDPDSLVSLSTTLKALAVRD---EICKSIAESGGLDTLLRCIDDSNEQ------------------------------ 298 (461)
T ss_pred ccCCccHHHHHHHHHHHHHHHH---HHHHHHHHccCHHHHHHHHhhhchh------------------------------
Confidence 123444444455555554321 11111000 0012233333221110
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc-c---------hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHH
Q 005686 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-I---------LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (683)
Q Consensus 351 ~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~-~---------~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~ 420 (683)
..|..+..+++.+....|++ + .+.++....+.. .+ +.+-..++.++.-++
T Consensus 299 ---------------~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~---p~Vi~~~~a~i~~l~ 358 (461)
T KOG4199|consen 299 ---------------GNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DD---PLVIQEVMAIISILC 358 (461)
T ss_pred ---------------hHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CC---hHHHHHHHHHHHHHH
Confidence 24666777777777666652 2 223333333322 23 778888888888777
Q ss_pred hcchhhhhhhHHH-HHHHHhhccC-C-CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHH
Q 005686 421 EGCIKGLYPHLSE-IVAFLIPLLD-D-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE 497 (683)
Q Consensus 421 ~~~~~~~~~~~~~-l~~~l~~~l~-d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~ 497 (683)
-..++.-...++. .-...++.++ + .+..|++.||+.+-.+...-.. ..+..+..-+..|+..-...++.++.
T Consensus 359 LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~-----~~~~~l~~GiE~Li~~A~~~h~tce~ 433 (461)
T KOG4199|consen 359 LRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE-----NRTILLANGIEKLIRTAKANHETCEA 433 (461)
T ss_pred hcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh-----ccchHHhccHHHHHHHHHhcCccHHH
Confidence 6666544444433 3334555554 2 3568899999999999876654 35677777888888877777788888
Q ss_pred HHHHHHHHH
Q 005686 498 AACSAFATL 506 (683)
Q Consensus 498 ~a~~al~~l 506 (683)
.|-.||..+
T Consensus 434 ~akaALRDL 442 (461)
T KOG4199|consen 434 AAKAALRDL 442 (461)
T ss_pred HHHHHHHhc
Confidence 887777654
No 233
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=94.16 E-value=0.17 Score=39.23 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=49.3
Q ss_pred ccccHHHHHHHHHHHHHhhcCc---cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhc
Q 005686 363 NVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (683)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~ 422 (683)
++|.+|..|++.+..++..++. .+.+.+...+.+.+.+++ .++..+++|+.+|..++..
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~-~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK-KPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999985 456778888888887763 3588999999999998653
No 234
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.10 E-value=2.1 Score=40.30 Aligned_cols=141 Identities=15% Similarity=0.149 Sum_probs=81.1
Q ss_pred hhhhHHHHHHHHccC---CCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC------C----CChhHHHHH
Q 005686 387 LPTLMPVIQAKLSAS---GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD------D----KFPLIRSIS 453 (683)
Q Consensus 387 ~~~l~~~l~~~l~~~---~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~------d----~~~~vr~~a 453 (683)
+..++|++..++.+. +-.|-..-...+....++.....-.+.||+.+++|.++.++- + .+-.+|.-|
T Consensus 228 lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~A 307 (450)
T COG5095 228 LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVA 307 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 334555554444331 111134444455555556555444567999999998777652 1 234689999
Q ss_pred HHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCC--ccHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHH
Q 005686 454 CWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFG 530 (683)
Q Consensus 454 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~--~~v~~~a~~al~~l~~~~-~~~l~~~l~~i~~~L~~~l~ 530 (683)
+..++..+..++.. -...-+.+...+++.+-|.+ ...+-.|+.++..+-... +-.+.|.++.........+.
T Consensus 308 A~ll~yV~~~F~~~-----YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle 382 (450)
T COG5095 308 ADLLKYVFSNFSSS-----YKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE 382 (450)
T ss_pred HHHHHHHHhhhhHh-----hhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh
Confidence 99999998888753 34445677777877776643 345666777777665443 23344444333332233444
Q ss_pred Hh
Q 005686 531 KY 532 (683)
Q Consensus 531 ~~ 532 (683)
+.
T Consensus 383 ~~ 384 (450)
T COG5095 383 KG 384 (450)
T ss_pred cc
Confidence 43
No 235
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=11 Score=40.94 Aligned_cols=171 Identities=15% Similarity=0.206 Sum_probs=106.6
Q ss_pred CCHhHHHHHHHHHhhhhhcC-------ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHH
Q 005686 86 MSPSNQQYIKSELLPCLGAA-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (683)
Q Consensus 86 l~~~~~~~i~~~Ll~~l~~~-------~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l 158 (683)
.+++....+.+.++-.+... ++......+.-++.+.-.. ++.+..+++.+...|..+|..++..+..+
T Consensus 75 ~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~-----qd~I~lll~~~e~~DF~VR~~aIqLlsal 149 (970)
T KOG0946|consen 75 MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKN-----QDNITLLLQSLEEFDFHVRLYAIQLLSAL 149 (970)
T ss_pred CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcC-----chhHHHHHHHHHhhchhhhhHHHHHHHHH
Confidence 44555555555555555321 2222334444444444322 56788888888888999999999999999
Q ss_pred HhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhh-HHhHHHHHHHHHhhhCC----C
Q 005686 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLSND----P 233 (683)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~l~~l~~~~~~----~ 233 (683)
...-+..+.+-+ ...+.-+..++..+.|...-+|..++-.|..++...+..- .-.+++++..|+..+.. .
T Consensus 150 ls~r~~e~q~~l-----l~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~d 224 (970)
T KOG0946|consen 150 LSCRPTELQDAL-----LVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLD 224 (970)
T ss_pred HhcCCHHHHHHH-----HHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 887776543211 1124456678889999999999999999999987755311 11244566666665532 1
Q ss_pred CHHHHHHHHHHHHHHHhhCc---cch--hhhHHHHHHH
Q 005686 234 SAEVRKLVCAAFNLLIEVRP---SFL--EPHLRNLFEY 266 (683)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~---~~~--~~~l~~l~~~ 266 (683)
..-|...++..+..+..... .++ ..|++.+..+
T Consensus 225 GgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~kl 262 (970)
T KOG0946|consen 225 GGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKL 262 (970)
T ss_pred CcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhh
Confidence 22466777778887776543 222 2466666543
No 236
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.89 E-value=0.88 Score=39.68 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=58.0
Q ss_pred hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHH
Q 005686 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (683)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~ 225 (683)
..|.+|++++..+.+.+...+ ....++..+..++.| +.+++..+...+..++...|..+...++.+.+.
T Consensus 42 elRK~ayE~lytlLd~~~~~~----------~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~ 110 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI----------DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEP 110 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-----------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 789999999999999766543 257789999999999 999999999999999998888777766655555
Q ss_pred HHhh
Q 005686 226 LFLL 229 (683)
Q Consensus 226 l~~~ 229 (683)
+-..
T Consensus 111 l~~~ 114 (169)
T PF08623_consen 111 LRKT 114 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 237
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.78 E-value=2.8 Score=43.20 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=85.7
Q ss_pred hhhhHHHHHHHHccCCCCC-----hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC----------CCChhHHH
Q 005686 387 LPTLMPVIQAKLSASGDEA-----WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD----------DKFPLIRS 451 (683)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~----------d~~~~vr~ 451 (683)
+..++|++..++...-..| -..-.-.+....++...-.=.+.+|+.+++|.++.++- |.|+.+|.
T Consensus 237 L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRD 316 (576)
T KOG2549|consen 237 LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRD 316 (576)
T ss_pred HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHH
Confidence 4566677666665432111 33333344444455544444568999999998877652 57899999
Q ss_pred HHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCC--ccHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHH
Q 005686 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMA 528 (683)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~--~~v~~~a~~al~~l~~~~-~~~l~~~l~~i~~~L~~~ 528 (683)
-|+..++.+++.+... ....-..++..+.+.+.|+. ....-.++..|..+-... ..-+.|.+..+...+...
T Consensus 317 fAA~ll~~i~k~f~~~-----y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~ 391 (576)
T KOG2549|consen 317 FAARLLAQICKNFSTL-----YNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSV 391 (576)
T ss_pred HHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhh
Confidence 9999999999988753 33445678888888888863 233444444444443322 233455566555555554
Q ss_pred HHH
Q 005686 529 FGK 531 (683)
Q Consensus 529 l~~ 531 (683)
+..
T Consensus 392 l~~ 394 (576)
T KOG2549|consen 392 LDV 394 (576)
T ss_pred ccc
Confidence 443
No 238
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.76 E-value=7.9 Score=38.44 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=81.2
Q ss_pred hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhh----hhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL----YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
+..++......+.++-.+.++.|..-...+..+...+...+ .+.+..++..+.-++++++..|...++.++..+.+
T Consensus 115 ~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 115 LEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 33444444555555434458999999999999998875544 24567788889999999999999999999999988
Q ss_pred HHHhh---hCCCcchhhHHHHHHHHHHHhccCC-ccHHHHHHHHHHHHHH
Q 005686 463 FIVQD---IGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEE 508 (683)
Q Consensus 463 ~~~~~---~~~~~~~~~~~~~l~~l~~~l~d~~-~~v~~~a~~al~~l~~ 508 (683)
.+... ........|+-.++..++..+.|+. ...-..-+..|..+..
T Consensus 195 ~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 195 NVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 87651 0011234566667777777777764 2222333344555443
No 239
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.70 E-value=11 Score=40.96 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHHhcch---hhhhhhH---HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHH
Q 005686 406 WKDREAAVLALGAIAEGCI---KGLYPHL---SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~---~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (683)
..+-+++.-+|..++.+.. ..+...+ +..+|.++..+...+..|..+++.+|..++..... ....-..
T Consensus 533 ~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn------k~ligk~ 606 (717)
T KOG1048|consen 533 DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN------KELIGKY 606 (717)
T ss_pred hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh------hhhhhcc
Confidence 7788888888888877653 2222211 33678899999988888999999999999876542 1222356
Q ss_pred HHHHHHHHhccCCc------cHHHHHHHHHHHHHHH
Q 005686 480 VLMGLLKRILDTNK------RVQEAACSAFATLEEE 509 (683)
Q Consensus 480 ~l~~l~~~l~d~~~------~v~~~a~~al~~l~~~ 509 (683)
.|+.|+..|.+..+ .+...+|.+|.+++..
T Consensus 607 a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 607 AIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred hHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 88899999886533 4566777777777744
No 240
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.66 E-value=8.5 Score=38.50 Aligned_cols=197 Identities=14% Similarity=0.090 Sum_probs=102.2
Q ss_pred CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc--C----CHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHH
Q 005686 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--M----SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVV 120 (683)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~--l----~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i 120 (683)
++.+..++.+++. ...++.-+....++--.+...-.. + ....+...-...+..+...+..+....+.+++.+
T Consensus 64 ~~~v~~fi~LlS~--~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~l 141 (442)
T KOG2759|consen 64 AQYVKTFINLLSH--IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKL 141 (442)
T ss_pred HHHHHHHHHHhch--hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3555566666653 333344444555554444321110 1 1111111123455667778888888889999999
Q ss_pred HhhcC----cCChHHHHHHHHHHhcc-CChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHH
Q 005686 121 VQLGG----IAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTS 195 (683)
Q Consensus 121 ~~~~~----~~~~~~l~~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 195 (683)
+.... .....-.+..+...+++ .++..+..+..||..+...-..... +-. ..-+.-+++.+. -+..+..
T Consensus 142 a~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~--~v~--adg~~~l~~~l~--s~~~~~Q 215 (442)
T KOG2759|consen 142 ACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA--FVI--ADGVSLLIRILA--STKCGFQ 215 (442)
T ss_pred HHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe--eee--cCcchhhHHHHh--ccCcchh
Confidence 87642 22444456666666655 5667888899999888765433211 000 001122222222 2224667
Q ss_pred HHHHHHHHHHHHHhccchhhHHhHH--HHHHHHHhhhCC-CCHHHHHHHHHHHHHHHhhCc
Q 005686 196 LRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 196 vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~ 253 (683)
++-..+-|+..+.-. |. +...+. .+++.+...+++ ..++|-.-++..+..+++..+
T Consensus 216 lQYqsifciWlLtFn-~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 216 LQYQSIFCIWLLTFN-PH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred HHHHHHHHHHHhhcC-HH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 777787777766421 21 112221 345555554442 234555566666777776654
No 241
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.56 E-value=9.7 Score=38.84 Aligned_cols=256 Identities=10% Similarity=0.125 Sum_probs=131.5
Q ss_pred CHHHHHHHHHHHHHHHhc------cchhhHHhHHHHHHHHHhhhCCCCH--HHHHHHHHHHHHHHhhCccchhhhHHHHH
Q 005686 193 HTSLRKLSLGSVNQFIML------MPSALFVSMDQYLQGLFLLSNDPSA--EVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (683)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~------~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~l~~l~ 264 (683)
+.++-..|+++++.++.. ++.+... .++...+..+.++.. .+....+.+|.. -...+..+.......+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~---~~i~~~i~~l~~~~~~K~i~~~~l~~ls~-Q~f~~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFAS---FIIDHSIESLQNPNSPKSICTHYLWCLSD-QKFSPKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCCCCcccchhhHHHH
Confidence 667888999999888743 2222222 245555565554332 233333333321 2223344444433333
Q ss_pred HHHHHhhcC--CChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcc
Q 005686 265 EYMLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (683)
Q Consensus 265 ~~~~~~~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~ 342 (683)
-..+..+++ ....+....+.++..+... .+..+......-+|.++..+..+..+
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q--~p~~M~~~~~~W~~~l~~~l~~~~k~---------------------- 190 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQ--FPQQMIKHADIWFPILFPDLLSSAKD---------------------- 190 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcchH----------------------
Confidence 222233332 3455666677777777665 44455555555666666555443322
Q ss_pred cccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-------------------cchhhhHHHHHHHHccCCC
Q 005686 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-------------------EILPTLMPVIQAKLSASGD 403 (683)
Q Consensus 343 ~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-------------------~~~~~l~~~l~~~l~~~~~ 403 (683)
+|..|..++..+...++. .....+.+.+.+.+.+.+.
T Consensus 191 ------------------------ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~ 246 (372)
T PF12231_consen 191 ------------------------IRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE 246 (372)
T ss_pred ------------------------HHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC
Confidence 333333333333333221 2233455556666665220
Q ss_pred CChhhHHHHHHHHHHHHh--cch-hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHH
Q 005686 404 EAWKDREAAVLALGAIAE--GCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV 480 (683)
Q Consensus 404 ~~~~~r~aal~~l~~l~~--~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 480 (683)
.. .+....+.+.. +.. -.-.+++.+.+...-.+++++++.+|..|..+=..+....... .......+.-+
T Consensus 247 --~~---~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~--~~~~~k~l~lL 319 (372)
T PF12231_consen 247 --YK---LAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN--ELTSPKRLKLL 319 (372)
T ss_pred --cc---hHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC--ccccHHHHHHH
Confidence 11 11222222111 111 1234788888999999999999999999988877777644321 22334555555
Q ss_pred HHHHHHHhccC-Cc----cHHHHHHHHHHHHH
Q 005686 481 LMGLLKRILDT-NK----RVQEAACSAFATLE 507 (683)
Q Consensus 481 l~~l~~~l~d~-~~----~v~~~a~~al~~l~ 507 (683)
+..+...+... .. .++..+...+..++
T Consensus 320 ~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 320 CQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 66665555432 22 55666666666554
No 242
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.19 E-value=4.8 Score=36.34 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
..+++.+++++.+++..+|..|+.++..+.+. |+..+ ...+|.++....|+++.+|..|...+..+.+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q----------GLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ----------GLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc----------CCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 45677888888889999999999999888762 11111 4678899999999999999999999999887
Q ss_pred ccchhhHH
Q 005686 210 LMPSALFV 217 (683)
Q Consensus 210 ~~~~~~~~ 217 (683)
.-+..+..
T Consensus 75 K~~s~v~~ 82 (187)
T PF12830_consen 75 KHESLVES 82 (187)
T ss_pred HhHHHHHH
Confidence 76554443
No 243
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.16 E-value=2.9 Score=37.81 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=66.9
Q ss_pred hHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh
Q 005686 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 178 ~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
+...++.+++.+.+++..+|..|++.+..+.... +... ...+|.++.+..|+++.+|..|...+..+.+.++..+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG---LvnP-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG---LVNP-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC---CCCh-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 4667888899999999999999999999887542 1111 13578888898999999999999999999999998887
Q ss_pred hhHHHHHHH
Q 005686 258 PHLRNLFEY 266 (683)
Q Consensus 258 ~~l~~l~~~ 266 (683)
.....-+..
T Consensus 82 ~~~~~gi~~ 90 (187)
T PF12830_consen 82 SRYSEGIRL 90 (187)
T ss_pred HHHHHHHHH
Confidence 654443433
No 244
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.56 E-value=0.81 Score=39.51 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh----------------hhhhh
Q 005686 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK----------------GLYPH 430 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~----------------~~~~~ 430 (683)
++.....++..++...-..-.+.+++.+.+.+++ + ......++..|..+.+...+ .+...
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~---~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-S---PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-c---hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 5666777888887776444566788878777776 3 67788888888887775532 12234
Q ss_pred HHHHHHHHhhccCCCC----hhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHHHHHhccCCccHHHHHHHHH
Q 005686 431 LSEIVAFLIPLLDDKF----PLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAF 503 (683)
Q Consensus 431 ~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al 503 (683)
.+.++..+.+.+.... ..+...++.+++.+..+++.. ... ..+++.+++.+++ +..+..|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-------~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE-------LIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-------HHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-------HhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 4556666666665322 788889999999998876532 222 3478888888854 45688888775
No 245
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.40 E-value=0.75 Score=37.28 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=50.2
Q ss_pred HHHHHHHHHh-ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchh--HhhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005686 131 ELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI--NIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (683)
Q Consensus 131 ~l~~~l~~~l-~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~vr~~a~~~l~~~ 207 (683)
+++..|.+.+ .+.|+.+...|+.-++.+++..+..- ..+ -..-..+++++.+++++||..|+.|+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr---------~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR---------NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH---------HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH---------HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4677777777 45577777788888999998877531 111 22345688999999999999999999887
Q ss_pred Hh
Q 005686 208 IM 209 (683)
Q Consensus 208 ~~ 209 (683)
+.
T Consensus 114 m~ 115 (119)
T PF11698_consen 114 MV 115 (119)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 246
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.33 E-value=0.25 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.2
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHH
Q 005686 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (683)
Q Consensus 434 l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (683)
.+|.++..+.+.++.|+..|+|+|+.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999986
No 247
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=17 Score=38.01 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=62.4
Q ss_pred ccccHHHHHHHHHHHHHhhcCc---cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHh
Q 005686 363 NVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLI 439 (683)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~ 439 (683)
..|..-.++.-.+..+++.+.. +++|.++..+.+.=. . ...|+.++..+|.+.+-... -...++.+..++.
T Consensus 401 ~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~--Q---~~~~~ts~ll~g~~~ew~~~-~p~~le~v~~~~~ 474 (559)
T KOG2081|consen 401 ASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE--Q---APLRYTSILLLGEYSEWVEQ-HPELLEPVLRYIR 474 (559)
T ss_pred CchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc--c---hhHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 4577888888888888888753 445555554443211 1 45999999999999886532 1234555666777
Q ss_pred hccCCCChhHHHHHHHHHHHHHHHHH
Q 005686 440 PLLDDKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
..+.... ...++..+...++..+.
T Consensus 475 ~~~~~~~--~as~~a~~~~~i~~~c~ 498 (559)
T KOG2081|consen 475 QGLQLKR--LASAAALAFHRICSACR 498 (559)
T ss_pred HHhhhcc--hhHHHHHHHHHHHHHHH
Confidence 7776544 55666666777776664
No 248
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=3.7 Score=39.11 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=74.2
Q ss_pred HHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCc
Q 005686 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (683)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (683)
-+..++.+++ +.+|.+|+..+..++....+.+..+-...++.+.+.+.+..+ ..-|+.++.+++.... .
T Consensus 7 elv~ll~~~s---P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~------l 75 (353)
T KOG2973|consen 7 ELVELLHSLS---PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE------L 75 (353)
T ss_pred HHHHHhccCC---hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH------H
Confidence 3556777887 999999998877776653344556666688888889888777 3446678888887653 2
Q ss_pred chhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 473 ~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
.+..+..++..++.++.|+.......+|..+.++.+
T Consensus 76 ~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 76 RKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 455566677777888887766666666777666654
No 249
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.94 E-value=4.3 Score=39.65 Aligned_cols=145 Identities=14% Similarity=0.079 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHHHHh-c-chhhhhhhHHHHHHHHhhccCCC-ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHH
Q 005686 406 WKDREAAVLALGAIAE-G-CIKGLYPHLSEIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~-~-~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 482 (683)
|..-.+++.-+..... . .....-|+-..+...+.++|+-. -..|-..|+.+...+.+.++.. .....+.-..+
T Consensus 25 WAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~----~L~~dl~i~~~ 100 (307)
T PF04118_consen 25 WADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD----GLAQDLPIYSP 100 (307)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH----HHHhhcHHHHH
Confidence 8888887776666555 1 11122344445666777777643 3467888999999998887654 34555566677
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccc
Q 005686 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (683)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (683)
.++..+...+..||..-...+.+..-..+..+.|.+..++.++...+++..++....++..+..+..++|.+
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 777777776778888878877777666677899999999999999999877777778888888888888876
No 250
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=91.60 E-value=17 Score=36.88 Aligned_cols=160 Identities=9% Similarity=0.136 Sum_probs=101.8
Q ss_pred cCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHH-HHHHhhcC--CCHHHHHHHHH
Q 005686 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP-RLLQFFQS--PHTSLRKLSLG 202 (683)
Q Consensus 126 ~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~~l~~--~~~~vr~~a~~ 202 (683)
.-.|..+.+.++..+-+++..+|-+|+++++.++....... .....-++ .+...+.. .+..=|..|++
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~---------~~~~l~id~~ii~SL~~~~~~~~ER~QALk 90 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQ---------ILLKLHIDIFIIRSLDRDNKNDVEREQALK 90 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHH---------HHHHcCCchhhHhhhcccCCChHHHHHHHH
Confidence 45788888888875555568999999999999887654310 00010011 23333433 34567899999
Q ss_pred HHHHHHhc--cchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhh--hHHHHHHHHHHhhcCCChHH
Q 005686 203 SVNQFIML--MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDTDDDV 278 (683)
Q Consensus 203 ~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~l~~l~~~~~~~~~~~~~~v 278 (683)
.+..+++. .+..+. ..++..+.....+++...|..+++.+.+++-..|+.+.. -+..++..+.. ...++
T Consensus 91 liR~~l~~~~~~~~~~---~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~~~~~ 163 (371)
T PF14664_consen 91 LIRAFLEIKKGPKEIP---RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----GSFSI 163 (371)
T ss_pred HHHHHHHhcCCcccCC---HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----ccHhH
Confidence 99999876 322222 245788888888888899999999999999888876532 23344444333 22224
Q ss_pred HHHHhhHHHHhhccCCchhhHHh
Q 005686 279 ALEACEFWHSYFEAQLPHENLKE 301 (683)
Q Consensus 279 r~~a~~~l~~l~~~~~~~~~~~~ 301 (683)
....+..+..+.+.+..+..+.+
T Consensus 164 ~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 164 SESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred HHHHHHHHHHHhCCcchhhhhcC
Confidence 55556666666666555444443
No 251
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=91.52 E-value=11 Score=37.61 Aligned_cols=176 Identities=15% Similarity=0.060 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHH
Q 005686 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (683)
Q Consensus 107 ~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 186 (683)
...+..+..++..|... -+..+...+++........++..|..++...+.....++-..+ ......++.++
T Consensus 40 ~~~~~~g~~l~~~iL~~--------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~f-d~~~~~l~kll 110 (330)
T PF11707_consen 40 LSFQSYGLELIRSILQN--------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSF-DFSLKSLPKLL 110 (330)
T ss_pred hhHHHHHHHHHHHHHHH--------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCchhhHHHHh
Confidence 33555566666666642 2778888888888888889999999998854432221110000 01122233333
Q ss_pred Hhhc-C-CC--------HHHHHHHHHHHHHHHhccchhhHHh-H--HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc
Q 005686 187 QFFQ-S-PH--------TSLRKLSLGSVNQFIMLMPSALFVS-M--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 187 ~~l~-~-~~--------~~vr~~a~~~l~~~~~~~~~~~~~~-~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (683)
.-=. . .. +.+|...++.+..++...+...... + ..++..++..+..+..++...++++|..-+-..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~ 190 (330)
T PF11707_consen 111 TPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS 190 (330)
T ss_pred ccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC
Confidence 2111 0 01 3899999999999988766544332 2 1347777777776667788888888876443322
Q ss_pred cchhhhH------HHHHHHHHHhhcCCCh----HHHHHHhhHHHHhhcc
Q 005686 254 SFLEPHL------RNLFEYMLQVNKDTDD----DVALEACEFWHSYFEA 292 (683)
Q Consensus 254 ~~~~~~l------~~l~~~~~~~~~~~~~----~vr~~a~~~l~~l~~~ 292 (683)
.+.+.. ...+..+.......++ .++..+-+|+..+|..
T Consensus 191 -~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 191 -SVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred -CCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 222211 1233333334333344 7888889998888865
No 252
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=91.45 E-value=5.8 Score=41.98 Aligned_cols=200 Identities=13% Similarity=0.145 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHH
Q 005686 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-ELAPRLEIILQHL 525 (683)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-~l~~~l~~i~~~L 525 (683)
..+-......+..++.++.. ....+..++..++..+...+..+|..|.-+|..+|..... .+.+.+......
T Consensus 256 te~~~~~L~~l~~l~~~~~~------f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~a- 328 (661)
T KOG2256|consen 256 TEVLAFTLRHLTVLVPFLAT------FPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLA- 328 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHH-
Confidence 34444445555555555542 3566677777777777777788999999999988877643 233333333222
Q ss_pred HHHHHHhh---H-------hHHHHHHHHHHHHHHHh-ccccCchhHHHhhhHHHHHHHhcCCCCCcc-h--hhHHhHHHH
Q 005686 526 MMAFGKYQ---R-------RNLRIVYDAIGTLADAV-GFELNQPVYLDILMPPLIAKWQQLPNSDKD-L--FPLLECFTS 591 (683)
Q Consensus 526 ~~~l~~~~---~-------~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~~~~l~~ 591 (683)
.+.+.. . .-+..+.+.++.=...+ ...| -|..++--+|...+.....++.. + .+.+.|+..
T Consensus 329 --fv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF---~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~l 403 (661)
T KOG2256|consen 329 --FVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAF---VYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDL 403 (661)
T ss_pred --HHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHH---HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 222210 0 01112333333211111 1222 35555554444444332212222 1 133334332
Q ss_pred HHH----Hhcc--ccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCC
Q 005686 592 IAQ----ALGA--GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPN 665 (683)
Q Consensus 592 l~~----~~g~--~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~ 665 (683)
=+. ..|. ...|.+.++++.++.++.-.. +. -...+|..|+..|..++...|- |-|..+.++.+
T Consensus 404 W~rvisf~~~~~s~lq~LvYpLvQvi~GvirLip---------T~-qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Em 472 (661)
T KOG2256|consen 404 WLRVISFANGSASQLQPLVYPLVQVILGVIRLIP---------TP-QYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEM 472 (661)
T ss_pred HHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcC---------cc-cchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHH
Confidence 222 3333 344555555555554444321 11 2456899999999999988887 55555556666
Q ss_pred cccc
Q 005686 666 LTWK 669 (683)
Q Consensus 666 l~~~ 669 (683)
|...
T Consensus 473 l~~~ 476 (661)
T KOG2256|consen 473 LKSV 476 (661)
T ss_pred HHHh
Confidence 6433
No 253
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.44 E-value=17 Score=36.51 Aligned_cols=69 Identities=22% Similarity=0.366 Sum_probs=51.5
Q ss_pred HHHHHHhhccCCC-ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHH--HHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 433 EIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK--VLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 433 ~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
+++..+++.|+.+ +|.+-.-||.=+|.+.++.+. +...+.+ .=..+++.++.++++||-+|+.|+..+.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 4777888888754 488888999999999988764 2222222 2345677788889999999999998765
No 254
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.38 E-value=25 Score=38.47 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=70.1
Q ss_pred CChHHHHHHHHHHHHHHhhc--CcCCh-----HHHHHHHHHHh----ccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 005686 105 ADRHIRSTVGTIVSVVVQLG--GIAGW-----LELLQALVTCL----DSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (683)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~--~~~~~-----~~l~~~l~~~l----~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (683)
..+.+|..+...++.++... ....+ .++++.+.+.+ +..+...+...+.+||.+-.
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------------- 475 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH------------- 475 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-------------
Confidence 35678888888888888653 22222 35555555444 33455667777777765322
Q ss_pred CcchhHhhHHHHHHhhc---CCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 005686 174 AECPINIFLPRLLQFFQ---SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (683)
Q Consensus 174 ~~~~~~~i~~~l~~~l~---~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 246 (683)
...++.+...+. ..+..+|.+|+.+|..+....|....+.+ ++.+.+. +.+.++|..|+..|.
T Consensus 476 -----~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l---~~i~~n~--~e~~EvRiaA~~~lm 541 (574)
T smart00638 476 -----PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL---LPIYLNR--AEPPEVRMAAVLVLM 541 (574)
T ss_pred -----hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH---HHHHcCC--CCChHHHHHHHHHHH
Confidence 222333333332 34678999999999988766665444433 3444332 345778888775543
No 255
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.19 E-value=0.37 Score=30.71 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 478 EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
...+|.|++.+.+.++.++..|++||++++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 347899999999999999999999999886
No 256
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=91.13 E-value=43 Score=40.64 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=83.1
Q ss_pred hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHH
Q 005686 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFA 504 (683)
Q Consensus 425 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~ 504 (683)
..+.+|++.++...-..+.++++.|+.-+......+...+.. -+-+.++..|+..+.+.+..-...|+..|.
T Consensus 427 ~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds--------~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~ 498 (1426)
T PF14631_consen 427 EVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS--------YCQQEVVGALVTHIGSGNSQEVDAALDVLC 498 (1426)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H--------HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc--------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 345678888888888888999999999988877777665421 123567777777776555444578899999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q 005686 505 TLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (683)
Q Consensus 505 ~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (683)
.++....+.+.||.. ++..++..+.+......+.+++.++.++..-
T Consensus 499 ~L~~~~~~~l~~fa~-~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 499 ELAEKNPSELQPFAT-FLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHH-HHHHHHTHH-HHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 999887788877744 4445556666666677788899999888654
No 257
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=90.96 E-value=19 Score=36.25 Aligned_cols=217 Identities=15% Similarity=0.079 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHhc---CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChH
Q 005686 32 DKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRH 108 (683)
Q Consensus 32 ~r~~A~~~L~~~~~---~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~ 108 (683)
.|--..+.|..+.. .+.+...+..++.+ +.++.....+.-.|...+... +.+.-+.+.+.+...+.+..+.
T Consensus 3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~K--E~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~ 76 (339)
T PF12074_consen 3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSK--ESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPP 76 (339)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCc
Confidence 34444444544433 23456677777775 788888877777776655443 3444456666777799998888
Q ss_pred HHHHHHHHHHHHHh----hcCcCChHHHHHHHHHHh----ccCChhHH----hHHHHHHHHHHhhchhccccC-C--CCC
Q 005686 109 IRSTVGTIVSVVVQ----LGGIAGWLELLQALVTCL----DSNDINHM----EGAMDALSKICEDIPQVLDSD-V--PGL 173 (683)
Q Consensus 109 vr~~~~~~l~~i~~----~~~~~~~~~l~~~l~~~l----~s~~~~~r----~~al~~l~~l~~~~~~~~~~~-~--~~~ 173 (683)
+|+.-...++.+.. .........++|.+.+.+ .++.+... .+++-.+. +........... . ..+
T Consensus 77 vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l 155 (339)
T PF12074_consen 77 VRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSL 155 (339)
T ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhh
Confidence 99998888888887 222334455666666655 33333222 22222222 000000000000 0 000
Q ss_pred C--cchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHh-HHHHHHHHHhhhCCC--CHHHHHHHHHHHHHH
Q 005686 174 A--ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP--SAEVRKLVCAAFNLL 248 (683)
Q Consensus 174 ~--~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~--~~~~~~~~~~~l~~l 248 (683)
. ....--+-+.+.+-+ .+.+.....++++..+....+....+. ...+-+.++.++.++ ...+|+.+++.+..+
T Consensus 156 ~~~~kps~ll~~kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l 233 (339)
T PF12074_consen 156 ALDPKPSFLLSEKVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKL 233 (339)
T ss_pred ccCCCcchhcCHHHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 0 000001112222222 334445556666666655544333222 244566666666666 789999999999999
Q ss_pred HhhCccchh
Q 005686 249 IEVRPSFLE 257 (683)
Q Consensus 249 ~~~~~~~~~ 257 (683)
....+..+.
T Consensus 234 ~~~~~~~l~ 242 (339)
T PF12074_consen 234 YASNPELLS 242 (339)
T ss_pred HHhChHHHH
Confidence 988887643
No 258
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.59 E-value=7.7 Score=33.15 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH--HHHHHHHhhccCC-CChhHHHHHHHHHHHHHHHH
Q 005686 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFI 464 (683)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 464 (683)
...+..+...+.+.+ +.+..-|+..+..++..|+..+...+ ..++..+...+.+ .++.|+..++..+..++..+
T Consensus 36 k~a~ral~KRl~~~n---~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 36 KDCLKAIMKRLNHKD---PNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 467788888888887 89999999999999999986554322 2355555556655 78999999999999999888
Q ss_pred Hh
Q 005686 465 VQ 466 (683)
Q Consensus 465 ~~ 466 (683)
+.
T Consensus 113 ~~ 114 (144)
T cd03568 113 KN 114 (144)
T ss_pred CC
Confidence 63
No 259
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=90.49 E-value=22 Score=36.14 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=123.8
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHH---------HhhhccCCCHHHHHHHHHHHHHHHHHh--hccCCHhHH
Q 005686 23 QQISPSSTADKSQIWQQLQQYSQFPDFNNYLAF---------ILARAEGKSVEIRQAAGLLLKNNLRTA--YKSMSPSNQ 91 (683)
Q Consensus 23 ~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~---------il~~~~~~~~~~R~~a~~~l~~~i~~~--w~~l~~~~~ 91 (683)
..++.+++ +|.+|...++.+-.+++++..+.. -|.. ......-|..|.-+.|..+... -+.+ -
T Consensus 33 ~lL~~~~~-vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~-~~~~~~ER~QALkliR~~l~~~~~~~~~----~ 106 (371)
T PF14664_consen 33 MLLSDSKE-VRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDR-DNKNDVEREQALKLIRAFLEIKKGPKEI----P 106 (371)
T ss_pred HHCCCcHH-HHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcc-cCCChHHHHHHHHHHHHHHHhcCCcccC----C
Confidence 56677788 999999999887665555443322 1221 2446778989999998887652 2223 3
Q ss_pred HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC-ChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCC
Q 005686 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA-GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (683)
Q Consensus 92 ~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~-~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (683)
..+.+.+.....+++...|..+-+.+..++-.++.- .+.+-+..+.+.+.++....-+..+.++-.+...-.. +..+
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t--R~yl 184 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT--RKYL 184 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch--hhhh
Confidence 355556666666788899999989998888775320 1112234444444434333444555555555443221 1111
Q ss_pred CCCCcchhHhhHHHHHHhh---cCCCH--HHHHHHHHHHHHHHhccchhhH---HhHHHHHHHHHhhhCCCCHHHHHHHH
Q 005686 171 PGLAECPINIFLPRLLQFF---QSPHT--SLRKLSLGSVNQFIMLMPSALF---VSMDQYLQGLFLLSNDPSAEVRKLVC 242 (683)
Q Consensus 171 ~~~~~~~~~~i~~~l~~~l---~~~~~--~vr~~a~~~l~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~~~~~~~ 242 (683)
+. ...++.++..+...- ..++. +.-..+.+++..+....+.-+. +.+ .-+..++..+.-|..++|+.++
T Consensus 185 ~~--~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 185 RP--GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred cC--CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHH
Confidence 10 122444444444441 11122 2334555666666654443211 111 2355666666778888999999
Q ss_pred HHHHHHHhhCc
Q 005686 243 AAFNLLIEVRP 253 (683)
Q Consensus 243 ~~l~~l~~~~~ 253 (683)
+.|..+....+
T Consensus 262 dll~dllrik~ 272 (371)
T PF14664_consen 262 DLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHCCCC
Confidence 98888877543
No 260
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.48 E-value=22 Score=36.24 Aligned_cols=169 Identities=14% Similarity=0.034 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhh----------hC-CCcch
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD----------IG-HQNGR 474 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----------~~-~~~~~ 474 (683)
-..-...+.++..+....+..+..+...=+|.++..+-+....+|..|..++..+...+++. .. .....
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 45566777888888888887777777766777777777788889988766655555444321 00 00111
Q ss_pred hhHHHHHHHHHHHhcc-CCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcc
Q 005686 475 EQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 475 ~~~~~~l~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (683)
.+.+-+.+.+.+++.+ .+....-..-.++..++....-.--+++...+.....+++..+...+..++.+=..++.....
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3455566666666666 333333333344444442211233467888887777778777666666777777777776654
Q ss_pred ccC-chhHHHhhhHHHHHHHhc
Q 005686 554 ELN-QPVYLDILMPPLIAKWQQ 574 (683)
Q Consensus 554 ~~~-~~~~~~~~~~~l~~~~~~ 574 (683)
+.. .++.+.-++.++...++.
T Consensus 308 ~~~~~~k~l~lL~~Pl~~~l~~ 329 (372)
T PF12231_consen 308 NELTSPKRLKLLCQPLSSQLRR 329 (372)
T ss_pred CccccHHHHHHHHHHHHHHhCc
Confidence 432 245666666666544443
No 261
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.47 E-value=3.4 Score=34.87 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=70.5
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHH
Q 005686 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (683)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (683)
++++..-..++..+..- +..-.+.+..|..-++++++.+...|+.+|..+++.++..+..++. ...++.
T Consensus 15 ~~D~~~il~icd~I~~~-----~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~------s~~fl~ 83 (133)
T cd03561 15 EPDWALNLELCDLINLK-----PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVA------DKEFLL 83 (133)
T ss_pred CccHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHh------hHHHHH
Confidence 45555544444444322 3445677888999999999999999999999999999886543321 135666
Q ss_pred HHHHhhcC---CCHHHHHHHHHHHHHHHhccc
Q 005686 184 RLLQFFQS---PHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 184 ~l~~~l~~---~~~~vr~~a~~~l~~~~~~~~ 212 (683)
.+...+.. .+..||..++..+..+....+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 67777654 578999999999999886654
No 262
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.20 E-value=1.4 Score=35.79 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=49.9
Q ss_pred HHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHH--HHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 434 IVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK--VLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 434 l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
++..++..|. +.++.+...||.=||.++++.+. ....+.. .=..+++.+.++++.||..|+.|+..++-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5666666663 44788888899999999998863 3444432 34567778888999999999999998764
No 263
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.02 E-value=54 Score=39.92 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=127.6
Q ss_pred Hhhhhhc-CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccC---ChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 005686 98 LLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (683)
Q Consensus 98 Ll~~l~~-~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~---~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (683)
|...+.. ..+.+|+.++.+++.+......-....++......+++. ++..+.+++.+++.+.+.++....
T Consensus 56 l~s~~~~~~~~p~rkL~s~~i~rl~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~------ 129 (2067)
T KOG1822|consen 56 LISRLTNGAGPPTRKLISVAIARLISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIG------ 129 (2067)
T ss_pred HHHHHccCCCchhHHHHHHHHHHHHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhc------
Confidence 3344433 478899999999998887621111223333333344443 445677889999999988887653
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc--hhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhh
Q 005686 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (683)
Q Consensus 174 ~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (683)
+.....++.+.+..+..+..+|....-.+......+. .........+.......+.|.+..+|..+.+|+..+...
T Consensus 130 --~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 130 --RGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred --chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhh
Confidence 3357778888888888888888888888877766554 233344445566666666677777999999999888876
Q ss_pred Cccch-hhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 252 RPSFL-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 252 ~~~~~-~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
.+..+ ..-+.....++.+.......++|..-.++++.+...
T Consensus 208 ~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 208 GGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred cCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhc
Confidence 66555 445566677777777778888888888888876554
No 264
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=89.77 E-value=2.1 Score=32.80 Aligned_cols=66 Identities=21% Similarity=0.388 Sum_probs=53.4
Q ss_pred HHHHHHhh-hCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHH
Q 005686 222 YLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (683)
Q Consensus 222 ~l~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~ 287 (683)
++..+... ...++.++|..+++|+..++...+..+..-.+.++..+-....+.++++...|++++.
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34444443 3456789999999999999999999999889999999888888888888888887653
No 265
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.75 E-value=10 Score=35.04 Aligned_cols=158 Identities=11% Similarity=0.052 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhh-cCChHHH
Q 005686 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIR 110 (683)
Q Consensus 32 ~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~-~~~~~vr 110 (683)
.|+-|.+.........+....+..+.. +...+.|..|+.++.... ...+++..+. +-..+. -.+..+.
T Consensus 35 lr~lak~~~~~~~~~~~~~~l~~~L~~---~~~~E~~~la~~il~~~~----~~~~~~~~~~----~~~~~~~~~~W~~~ 103 (213)
T PF08713_consen 35 LRKLAKDIYKELKLSEELYELADELWE---SGYREERYLALLILDKRR----KKLTEEDLEL----LEKWLPDIDNWATC 103 (213)
T ss_dssp HHHHHHHHHHHHCTSHHHHHHHHHHHC---SSCHHHHHHHHHHHHHCG----GG--HHHHHH----HHHCCCCCCCHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHcC---CchHHHHHHHHHHhHHHh----hhhhHHHHHH----HHHHhccCCcchhh
Confidence 455555555555444223334444444 556888999888885433 2233322222 222332 2466665
Q ss_pred HHH-HHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhh
Q 005686 111 STV-GTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (683)
Q Consensus 111 ~~~-~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 189 (683)
-.+ ..+++.+.... +.+.+.+.+.+.|+++-.|..|+.++...... ...+.++..+...+
T Consensus 104 D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 104 DSLCSKLLGPLLKKH-----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------------CHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHc
Confidence 555 56666665432 67788999999999999999887776444433 12467777788888
Q ss_pred cCCCHHHHHHHHHHHHHHHhccchhhHHhH
Q 005686 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (683)
Q Consensus 190 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 219 (683)
.|++..||.+.-.+|..+....|+...+.+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l 194 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDPDEVLEFL 194 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999999999998877665554444
No 266
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=52 Score=39.14 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=62.0
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhh
Q 005686 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (683)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 302 (683)
..+++-+.-.|+..+..++..|..+++... +...+.++......-++..+.+..||..+..++..+... ..+.+.||
T Consensus 44 ~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~--lkk~lsp~ 121 (1312)
T KOG0803|consen 44 DIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK--LKKKLSPF 121 (1312)
T ss_pred HHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH--HHHHhhHH
Confidence 333444444678888999999998887543 333332344444444667888999999999999888765 56677899
Q ss_pred hhhhHHHHHhhcc
Q 005686 303 LPRLVPVLLSNMI 315 (683)
Q Consensus 303 l~~l~~~l~~~l~ 315 (683)
+..++|..+....
T Consensus 122 LK~li~~wl~~~~ 134 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQF 134 (1312)
T ss_pred HHhhhhhhhheec
Confidence 9988887654433
No 267
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.47 E-value=6.4 Score=36.46 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHH
Q 005686 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
+...+.+.+...+++ .-.|.+++.++...... ...+.++..+...+.|++..||.+..|+|..++..-+
T Consensus 119 ~~~~~~~~~W~~s~~---~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 119 PEALELLEKWAKSDN---EWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp GGHHHHHHHHHHCSS---HHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 467888888888877 55555555544333221 5667788888889999999999999999999987644
No 268
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.13 E-value=3 Score=35.62 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=72.6
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHH
Q 005686 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (683)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (683)
++++..--.+|..+.. . +..-.+.+..|.+-+.+.++++...|+.+|..+++.++..+..++. ...++.
T Consensus 15 ~~dw~~il~icD~I~~----~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva------sk~Fl~ 83 (144)
T cd03568 15 SENWGLILDVCDKVKS----D-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVA------SRDFTQ 83 (144)
T ss_pred CcCHHHHHHHHHHHhc----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh------hHHHHH
Confidence 4455544444443332 1 3344677888888899999999999999999999999987654321 367778
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHHhccc
Q 005686 184 RLLQFFQS-PHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 184 ~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~ 212 (683)
.+...+.+ .+..|+..++..+..+....+
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 88888877 788999999999999876543
No 269
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=88.91 E-value=7.2 Score=34.51 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=75.0
Q ss_pred ChhHHhHHHHHHHHHHhhchhccccCC--CCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHH
Q 005686 144 DINHMEGAMDALSKICEDIPQVLDSDV--PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ 221 (683)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 221 (683)
+...|..+++.+..+.+..+..+..+. +.+..-.-..+++.+.+.+.++++.+-..+++++..+....-..+...++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999998888766321 111112235667777777777778888899999998887766666777777
Q ss_pred HHHHHHh-hhCCCC--HHHHHHHHHHHHHHHhh
Q 005686 222 YLQGLFL-LSNDPS--AEVRKLVCAAFNLLIEV 251 (683)
Q Consensus 222 ~l~~l~~-~~~~~~--~~~~~~~~~~l~~l~~~ 251 (683)
+++.++. .+..+. ..-|..+++.+..++..
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 7777766 444322 35677788888888864
No 270
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=88.70 E-value=2.9 Score=31.96 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=55.0
Q ss_pred hhHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 005686 177 PINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (683)
Q Consensus 177 ~~~~i~~~l~~~l~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 246 (683)
.-..++.++...+. .++.++|...+.|+..++......+...-+.++..+-....+.++.+...+++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34677777777754 46889999999999999987766666666777888877778888888888887764
No 271
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=88.54 E-value=14 Score=31.28 Aligned_cols=76 Identities=8% Similarity=0.068 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHH------hhHhHHHHHHHHHHHHHH
Q 005686 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTLAD 549 (683)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~------~~~~~~~~~~~~l~~l~~ 549 (683)
...+..+.+.+++.++.++..|+..|..++++||..+...+ ..++..|++.+.. ....+...+++.+.....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 56778888889999999999999999999999998764432 3455556666642 234566688888888887
Q ss_pred Hhcc
Q 005686 550 AVGF 553 (683)
Q Consensus 550 ~~~~ 553 (683)
..+.
T Consensus 117 ~f~~ 120 (139)
T cd03567 117 ELPH 120 (139)
T ss_pred Hhcc
Confidence 7653
No 272
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.35 E-value=95 Score=40.60 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=113.1
Q ss_pred hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch--------hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 005686 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--------KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (683)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~--------~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (683)
.+++.+.+++...+ ...+.++..++..+..... ....|.+..+++.+.+...++.+.-|...+..|+.+
T Consensus 984 i~ldal~~~l~~~~---~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l 1060 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN---SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCL 1060 (3550)
T ss_pred HHHHHHHHHHhccc---hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeee
Confidence 46778888888777 8899999999887765432 122467788899999999999999999999889888
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHH----HHHHHHHHHHHHHhccc-----ch-HHHHHHHHHHHHHHH
Q 005686 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQ----EAACSAFATLEEEAAEE-----LA-PRLEIILQHLMMAFG 530 (683)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~----~~a~~al~~l~~~~~~~-----l~-~~l~~i~~~L~~~l~ 530 (683)
.+.++.. ...++...++..++..+.|...++. ..+-..+..+.+.+... -. .....+...+...+.
T Consensus 1061 ~~~~~~~----~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 1136 (3550)
T KOG0889|consen 1061 IESMPSL----WLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF 1136 (3550)
T ss_pred hhhchHH----HHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc
Confidence 8877632 3456667778888887776543333 34555555555554211 11 234556666677777
Q ss_pred HhhHhHHHHHHHHHHHHHHHhcccc
Q 005686 531 KYQRRNLRIVYDAIGTLADAVGFEL 555 (683)
Q Consensus 531 ~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (683)
++++.++..+..++..+....|...
T Consensus 1137 npN~~VR~~~~~~L~~i~~~s~~~v 1161 (3550)
T KOG0889|consen 1137 NPNSDVREFSQKLLRLISELSGKSV 1161 (3550)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCcH
Confidence 7777888889999999988877654
No 273
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.63 E-value=2.7 Score=37.55 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=61.7
Q ss_pred hhHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHH
Q 005686 564 LMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDL 643 (683)
Q Consensus 564 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 643 (683)
++|.+.+.+.... -..+ +-+-+-+..+..+.|+...|.+++++..+-+.|.. .|.++.+.++.+
T Consensus 115 yLp~F~dGL~e~~-hpyr-f~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~t--------------rd~ev~~~~Lkv 178 (262)
T KOG3961|consen 115 YLPLFFDGLAETD-HPYR-FVARQGITDLLLAGGEKILPVLPQLILPLKAALVT--------------RDDEVICRTLKV 178 (262)
T ss_pred HHHHHhhhhhhcC-CCcc-hhhhhcHHHHHHhcccccccccHHHHHHHHHHHhh--------------ccHHHHHHHHHH
Confidence 4445555554332 1222 23334466777778888999999999888877765 356788888888
Q ss_pred HHHHHHHh---ccchHHhHHhhcCCccc
Q 005686 644 LSGLAEGL---GSGIESLVISLFPNLTW 668 (683)
Q Consensus 644 l~~l~~~~---~~~~~~~l~~i~p~l~~ 668 (683)
+..++... |..+.||-.+++|+++.
T Consensus 179 lq~lv~~~~~vG~aLVPfYRQlLp~~n~ 206 (262)
T KOG3961|consen 179 LQQLVVSVGCVGAALVPFYRQLLPVLNT 206 (262)
T ss_pred HHHHHHhccccchhhhhHHHHhhhhhhh
Confidence 88777554 56799999999999953
No 274
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=70 Score=38.19 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcc-hhhHHhHHHHHHHHhccccccchHHHHHHHHH
Q 005686 535 RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGAGFTQFAQPVFQRCIN 613 (683)
Q Consensus 535 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~ 613 (683)
.+...+..+++.+..+.++++. |+..++| .+..++.+. ...++..+..+...+|..+-+.+++++|.+-.
T Consensus 1519 ~v~~~li~~i~~~~~a~~~d~~--pl~~k~l-------~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaE 1589 (1621)
T KOG1837|consen 1519 IVSKLLIAEIASDSVADKDDLK--PLNQKIL-------KKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAE 1589 (1621)
T ss_pred HHHHHHHHHHHhhccCChhhhH--HHHHHHH-------HHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHH
Confidence 3455677777777776666543 4544433 333222222 24577888889999999999999999999998
Q ss_pred HHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhH
Q 005686 614 IIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLV 659 (683)
Q Consensus 614 ~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l 659 (683)
++++. +.++-..|-..+..+-+.+|+.|..|+
T Consensus 1590 L~ED~--------------~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1590 LMEDE--------------DDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HHhhh--------------HHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 88864 334544556677888889999887773
No 275
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.46 E-value=7.8 Score=32.67 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=63.1
Q ss_pred HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHH-HHHHHHHHHhcc---CCccHHHHHHHHHHHHH
Q 005686 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGLLKRILD---TNKRVQEAACSAFATLE 507 (683)
Q Consensus 432 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~d---~~~~v~~~a~~al~~l~ 507 (683)
...+..+.+.+++.+|.++..|+..+..+.+.++.. .+..+.. .++..+.+.+.. .++.|+..+...+....
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~----f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP----FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH----HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 346778888999999999999999999999988642 1233333 555566666654 35789999999999998
Q ss_pred HHhccc--chHHHHHHHH
Q 005686 508 EEAAEE--LAPRLEIILQ 523 (683)
Q Consensus 508 ~~~~~~--l~~~l~~i~~ 523 (683)
..++.. -.+++..+..
T Consensus 112 ~~f~~~~~~~~~~~~~y~ 129 (133)
T cd03561 112 ESFGGHSEDLPGIEDAYK 129 (133)
T ss_pred HHhcCCCccchHHHHHHH
Confidence 887643 3344544443
No 276
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.14 E-value=57 Score=36.70 Aligned_cols=110 Identities=18% Similarity=0.122 Sum_probs=78.0
Q ss_pred hhHHHHHHHHc-cCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhh
Q 005686 389 TLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (683)
Q Consensus 389 ~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (683)
.++..+...++ +.. -.+|.+++..+.+...++.. ...++..+..+....+|.-..||..++..++.+...-+.
T Consensus 576 ~V~~mi~Rr~~~d~k---~~v~k~a~~~l~S~l~~cD~--~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr- 649 (1529)
T KOG0413|consen 576 DVVYMIVRRLSTDDK---APVKKAACSLLKSYLSYCDE--ASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPR- 649 (1529)
T ss_pred HHHHHHHHHhccCCC---cccchhhHHHHHHHHhccch--hhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCch-
Confidence 45566666666 444 67899999999888777742 233445566677778899999999999999887653321
Q ss_pred hCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Q 005686 468 IGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (683)
Q Consensus 468 ~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (683)
.-..-...+..+..+++|....|.+.|...|..++--
T Consensus 650 -----~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p 686 (1529)
T KOG0413|consen 650 -----LFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP 686 (1529)
T ss_pred -----hhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 1233355567777788888889999999877776644
No 277
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=86.84 E-value=74 Score=38.75 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=65.4
Q ss_pred cCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 005686 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (683)
Q Consensus 126 ~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~ 205 (683)
...++.++.....++.+.++.++..|......+...+.... -.+++..++..+.+++..-..+|+.+|.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~-----------qqeVv~~Lvthi~sg~~~ev~~aL~vL~ 498 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC-----------QQEVVGALVTHIGSGNSQEVDAALDVLC 498 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH-----------HHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh-----------HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 35778888888888888888888888888888887764322 2445555555554444433468888888
Q ss_pred HHHhccchhhHHhHHHHHHHHHhhhCCCCH-HHHHHHHHHHHHHH
Q 005686 206 QFIMLMPSALFVSMDQYLQGLFLLSNDPSA-EVRKLVCAAFNLLI 249 (683)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~l~~l~ 249 (683)
.++...+..+.++ ..++..++..+.+=+. ++| .++..|..++
T Consensus 499 ~L~~~~~~~l~~f-a~~l~giLD~l~~Ls~~qiR-~lf~il~~La 541 (1426)
T PF14631_consen 499 ELAEKNPSELQPF-ATFLKGILDYLDNLSLQQIR-KLFDILCTLA 541 (1426)
T ss_dssp HHHHH-HHHHHHT-HHHHHGGGGGGGG--HHHHH-HHHHHHHHHH
T ss_pred HHHhccHHHHHHH-HHHHHHHHHHHhcCCHHHHH-HHHHHHHHHh
Confidence 8887655555443 2334444444433222 333 3455555544
No 278
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.26 E-value=1.2 Score=28.57 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=27.7
Q ss_pred HHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHH
Q 005686 415 ALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (683)
Q Consensus 415 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (683)
+++.+.+.-+.-+ ..+.+...+...+.|+++.||.+|..++
T Consensus 2 ~l~~iv~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCcccc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3455555433222 1236788899999999999999997653
No 279
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.93 E-value=5.7 Score=34.65 Aligned_cols=141 Identities=19% Similarity=0.198 Sum_probs=80.7
Q ss_pred Hhhhhh--cCChHHHHHHHHHHHHHHhhcCcCChHHHHH-HHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCC
Q 005686 98 LLPCLG--AADRHIRSTVGTIVSVVVQLGGIAGWLELLQ-ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (683)
Q Consensus 98 Ll~~l~--~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~-~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 174 (683)
++..|. ...+.+|..+.-+++.+.... +..+.+.+. .+...+..++......++.++..+....++....-+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~---- 82 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF---- 82 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC----
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH----
Confidence 444443 357889999988888886432 334444433 333444444445666777777777666554322111
Q ss_pred cchhHhhHHHHHHhhc--CCCHHHHHHHHHHHHHHHhccchhhHHh-HHHHHHHHHhhhC-CCCHH-HHHHHHHHHHH
Q 005686 175 ECPINIFLPRLLQFFQ--SPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSN-DPSAE-VRKLVCAAFNL 247 (683)
Q Consensus 175 ~~~~~~i~~~l~~~l~--~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~-~~~~~-~~~~~~~~l~~ 247 (683)
..+++++.+..... ..+..+..++++++..-+.. +..... ..++++.|-...+ +++.. +|..+.-.|.+
T Consensus 83 --~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 --LSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp --CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 12567777777777 67889999999999776533 111221 2334555555553 34444 66666655543
No 280
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.39 E-value=15 Score=31.38 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHhcc
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~-~~~~~~~~~~~~l~~l~~~~~~ 553 (683)
-...+..|.+.++..++.++..|+..|..++++||..+...+ ..+++.|.+.+.. ....+...+++.+.......+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 456788888889999999999999999999999987664322 3455555555543 3345566788888877777654
Q ss_pred c
Q 005686 554 E 554 (683)
Q Consensus 554 ~ 554 (683)
+
T Consensus 119 ~ 119 (142)
T cd03569 119 K 119 (142)
T ss_pred C
Confidence 3
No 281
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.38 E-value=77 Score=36.50 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=84.4
Q ss_pred HHHHHHHHHHh-----ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHH
Q 005686 130 LELLQALVTCL-----DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (683)
Q Consensus 130 ~~l~~~l~~~l-----~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l 204 (683)
.+++..+...+ .+-.+.+|..++.-|+..+..+++.+-. ...+..+-=.|.|.+.+||..++++|
T Consensus 281 ~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~----------dsYLKYiGWtLsDk~~~VRl~~lkaL 350 (1048)
T KOG2011|consen 281 ESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS----------DSYLKYIGWTLSDKNGTVRLRCLKAL 350 (1048)
T ss_pred HHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc----------chHHHHhcceeecCccHHHHHHHHHH
Confidence 33445554433 4668899999999999999999987643 34455555668889999999999999
Q ss_pred HHHHhccchhhHHhHHHHH----HHHHhhh-CCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHH
Q 005686 205 NQFIMLMPSALFVSMDQYL----QGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (683)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l----~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr 279 (683)
..+.+. +...+.+..+. ..++.+. .|.+..||...+..+..... +..+.. .=+..+..++-+.++.++
T Consensus 351 ~~L~e~--~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~--~g~L~d---~di~~Vy~Li~d~~r~~~ 423 (1048)
T KOG2011|consen 351 IKLYEK--DEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS--SGLLSD---KDILIVYSLIYDSNRRVA 423 (1048)
T ss_pred HHHHhc--cccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc--ccccCh---hHHHHHHHHHhccCcchH
Confidence 999866 12222233233 3344444 34445565544443332221 111111 111223344555667777
Q ss_pred HHHhhHHHH
Q 005686 280 LEACEFWHS 288 (683)
Q Consensus 280 ~~a~~~l~~ 288 (683)
..|.+++..
T Consensus 424 ~aa~~fl~~ 432 (1048)
T KOG2011|consen 424 VAAGEFLYK 432 (1048)
T ss_pred HHHHHHHHH
Confidence 777777655
No 282
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.06 E-value=49 Score=33.95 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHH--hhhHHHHHHHhcCCCCCcchhhHHhHHHH
Q 005686 514 LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD--ILMPPLIAKWQQLPNSDKDLFPLLECFTS 591 (683)
Q Consensus 514 l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 591 (683)
+..|+..+ ...+...+++. ..++|+|+++.-.-++..-...++ +++|.+.+.++--.+++.-+.+++-.+|.
T Consensus 502 FidyvgdL----a~i~~nd~~E~--F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT 575 (791)
T KOG1222|consen 502 FIDYVGDL----AGIAKNDNSES--FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGT 575 (791)
T ss_pred HHHHHHHH----HHHhhcCchHH--HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhh
Confidence 44455554 33344332222 678999998876444432111111 35565555544222112212343333444
Q ss_pred HHHHhcc--ccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHH
Q 005686 592 IAQALGA--GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEG 650 (683)
Q Consensus 592 l~~~~g~--~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~ 650 (683)
++..... -++| ..+++.++.+|+.+. .|.+++...+.+|-.+...
T Consensus 576 ~a~d~~cA~Lla~--a~~i~tlieLL~a~Q------------eDDEfV~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 576 MARDLDCARLLAP--AKLIDTLIELLQACQ------------EDDEFVVQIIYVFLQFLKH 622 (791)
T ss_pred hhhhhHHHHHhCc--cccHHHHHHHHHhhc------------ccchHHHHHHHHHHHHHHH
Confidence 4432221 1222 237777777887653 3456776666666665543
No 283
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=84.90 E-value=20 Score=31.61 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHHhccchhhH---------HhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHH
Q 005686 193 HTSLRKLSLGSVNQFIMLMPSALF---------VSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (683)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~~~---------~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 262 (683)
+...|..+++.+..+.+..++.+. ..+ ..+.+.+......++..+-..+++.+..+.......++..++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888776554443 111 2345666666555668888899999999998888888888888
Q ss_pred HHHHHHH-hhcCC--ChHHHHHHhhHHHHhhcc
Q 005686 263 LFEYMLQ-VNKDT--DDDVALEACEFWHSYFEA 292 (683)
Q Consensus 263 l~~~~~~-~~~~~--~~~vr~~a~~~l~~l~~~ 292 (683)
++..+.. .+..+ ....|..+++++..+++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 8887766 44433 245788899999999876
No 284
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=84.89 E-value=14 Score=31.41 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=55.7
Q ss_pred hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH--HHHHHHHhhccCC--CCh--hHHHHHHHHHHHH
Q 005686 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDD--KFP--LIRSISCWTLSRF 460 (683)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d--~~~--~vr~~a~~~l~~l 460 (683)
-...+..+.+.+.+++ +.+..-|+..+..+...|+..+...+ ..++..+...+.+ ..+ .||..+...+..+
T Consensus 40 ~kea~~~l~krl~~~~---~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 40 AKEAARALRKRLKHGN---PNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 3477888899999888 99999999999999999976553322 1234444444432 222 2999999999999
Q ss_pred HHHHHh
Q 005686 461 SKFIVQ 466 (683)
Q Consensus 461 ~~~~~~ 466 (683)
...+..
T Consensus 117 ~~~f~~ 122 (140)
T PF00790_consen 117 AEAFKS 122 (140)
T ss_dssp HHHTTT
T ss_pred HHHHCC
Confidence 998853
No 285
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.67 E-value=98 Score=37.10 Aligned_cols=139 Identities=14% Similarity=0.029 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHH
Q 005686 407 KDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (683)
Q Consensus 407 ~~r~aal~~l~~l~~~~~~-~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l 484 (683)
....+++.+-+.+.-+... .+. +.++..+.. ...+.+.+||.+++..+..+.-.-. ++ ......+.+-..+
T Consensus 1502 ~a~~~a~~~~~lm~~~~~~~~l~---~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~-Fv---~~~~~r~dI~~l~ 1574 (1710)
T KOG1851|consen 1502 LAKNSALLCHSLMSLSWIGHHLQ---PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNI-FV---SQELRRDDIRKLL 1574 (1710)
T ss_pred HHHHHHHHHHHHHHhhccchhhH---HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-hc---ccchhHHHHHHHH
Confidence 4455555555555544321 222 223444442 3446789999987666655432211 10 2344556777777
Q ss_pred HHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHhhHhHHH-HHHHHHHHHHHHhcccc
Q 005686 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF-GKYQRRNLR-IVYDAIGTLADAVGFEL 555 (683)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l-~~~~~~~~~-~~~~~l~~l~~~~~~~~ 555 (683)
...+.|....||..|+.+|.-++........+ .......... ....+.... .++..+|+++-+.+-.+
T Consensus 1575 ~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~v 1644 (1710)
T KOG1851|consen 1575 ESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVV 1644 (1710)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccc
Confidence 78888887889999999999998765433333 1111111111 111223333 67889999988875443
No 286
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=84.59 E-value=36 Score=32.04 Aligned_cols=144 Identities=14% Similarity=0.102 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHH-Hhh---c
Q 005686 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAF-LIP---L 441 (683)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~-l~~---~ 441 (683)
+.......+|..++.+-. ...+.++..+......+. -..+..++..+..+-..-+..+ +++..++.. ..+ .
T Consensus 16 ~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~---~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 16 ELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGS---LELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSS 90 (234)
T ss_pred HHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCc---hhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccc
Confidence 345556666666666554 667788888888777766 5556667777766665443322 555544333 222 1
Q ss_pred cC--CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHh-ccCCccHHHHHHHHHHHHHHHhcccchHHH
Q 005686 442 LD--DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI-LDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (683)
Q Consensus 442 l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l-~d~~~~v~~~a~~al~~l~~~~~~~l~~~l 518 (683)
.. +....+..+...++..+++..+ ..-.++++.+...+ ++.++.++..++.+|..+|+..--++.+..
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p---------~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRP---------DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCh---------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 22 2344455555566667776543 25677788888888 677788999999999999965444444444
Q ss_pred HHHHH
Q 005686 519 EIILQ 523 (683)
Q Consensus 519 ~~i~~ 523 (683)
..+.+
T Consensus 162 ~vl~~ 166 (234)
T PF12530_consen 162 KVLQK 166 (234)
T ss_pred HHHHH
Confidence 44433
No 287
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=83.71 E-value=59 Score=36.11 Aligned_cols=152 Identities=23% Similarity=0.349 Sum_probs=95.2
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcc
Q 005686 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (683)
Q Consensus 97 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (683)
.|+..+.+++-.+...+-..+......+ .+.| ++..++.+.-+.+. ..++.+|.. .. ++
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~~--l~~~l~~y~~~t~s---~~~~~il~~----~~-----------~P 66 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSD-REPW--LVNGLVDYYLSTNS---QRALEILVG----VQ-----------EP 66 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhcc-chHH--HHHHHHHHHhhcCc---HHHHHHHHh----cC-----------Cc
Confidence 4555565555555555444444444332 1223 45556555433221 123333321 11 12
Q ss_pred hhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH-HHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCcc
Q 005686 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPS 254 (683)
Q Consensus 177 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~ 254 (683)
.-..++..+-..+..+ ..|..++..|+.++..-|..+..... .+++.|++.+. |.+..+...++.+|..++-..+.
T Consensus 67 ~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 67 HDKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred cHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 2356677777777754 68899999999999887766554433 45666666544 66778888999999999999999
Q ss_pred chhhhHHHHHHHHHHhh
Q 005686 255 FLEPHLRNLFEYMLQVN 271 (683)
Q Consensus 255 ~~~~~l~~l~~~~~~~~ 271 (683)
.+.+|++.|+......+
T Consensus 145 ~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 145 SLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999999876654
No 288
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.58 E-value=4.9 Score=34.06 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=70.3
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhH
Q 005686 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (683)
Q Consensus 103 ~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~ 182 (683)
.+++...--.+|..+. .. +..-.+-+..+.+-+++.++++...|+.+|..+++.++..+..++. ...++
T Consensus 15 ~~~dw~~ileicD~In----~~-~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva------s~~Fl 83 (139)
T cd03567 15 REEDWEAIQAFCEQIN----KE-PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVG------KFRFL 83 (139)
T ss_pred CCCCHHHHHHHHHHHH----cC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHH------hHHHH
Confidence 3455555444444443 22 2334567888888899999999999999999999999987654321 25566
Q ss_pred HHHHHhhcC------CCHHHHHHHHHHHHHHHhccc
Q 005686 183 PRLLQFFQS------PHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 183 ~~l~~~l~~------~~~~vr~~a~~~l~~~~~~~~ 212 (683)
..+.+.+.. ++..|+..++..+..+....+
T Consensus 84 ~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 84 NELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 667777642 578999999999998876543
No 289
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=83.49 E-value=3.1 Score=36.27 Aligned_cols=131 Identities=15% Similarity=0.042 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH--HHHHHHHhhccC
Q 005686 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLD 443 (683)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~ 443 (683)
++|..+.-++..+....++.....+..++...+..++ ......++.++..+..+.++...+.+ +.+++.+.+...
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~---~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGE---MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccc---chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 4788888888887666666666667777888786655 45677777777777776654322211 234555555555
Q ss_pred --CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhc-cCCcc-HHHHHHHHHHH
Q 005686 444 --DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKR-VQEAACSAFAT 505 (683)
Q Consensus 444 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~-v~~~a~~al~~ 505 (683)
..+..+..+++.+++.-|..-. ...-.....++.|-+..+ +++.. +|..|+-+|.+
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~------~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKS------CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHH------HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHccHH------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5678888888888877663221 112233445556666664 33445 78877777654
No 290
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=83.49 E-value=65 Score=34.12 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHh--hcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC---
Q 005686 369 KCSAAALDVLSN--VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--- 443 (683)
Q Consensus 369 ~~a~~~l~~l~~--~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~--- 443 (683)
..+...++.+.. .+|...++.++..+....... .....+..++..++..-.. ...+..+...|.
T Consensus 195 ~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~-----~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 195 EACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV-----SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc-----ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccC
Confidence 346677777655 346677777888777665443 2344455566666643211 122333333331
Q ss_pred ---CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHH--HHHHHHHHHhccCCccHHHHHHHHHHHHH-HHhcc
Q 005686 444 ---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILDTNKRVQEAACSAFATLE-EEAAE 512 (683)
Q Consensus 444 ---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~v~~~a~~al~~l~-~~~~~ 512 (683)
..+..+-..|+..++.+.-..+.. ....-.+. .+++.+...++..++.|--.....+..++ ...+.
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~---~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQ---GYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccC---CcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhh
Confidence 234555567778888776544211 01111233 48999999999878888888888888888 55543
No 291
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=1.2e+02 Score=36.69 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=91.0
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHH
Q 005686 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (683)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (683)
+.+..||..+.+|++.- -...|..++..+.....+.+....+.+...+..+.+......-+.. -..+.+.++
T Consensus 1048 s~s~~Irelv~rC~~~n----ikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~----~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1048 SSSAEIRELVVRCISSN----IKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQE----MDSFKDCVK 1119 (1514)
T ss_pred cCcchhHHHHHhhhhhh----hhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhh----hHHHHHHHH
Confidence 45677888888888833 3468999999998888888888888888877766655443322110 012344455
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHHhccchh-----hH-------H-hHHHHHHHHHh---hhCCCCHHHHHHHHHHHH
Q 005686 184 RLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA-----LF-------V-SMDQYLQGLFL---LSNDPSAEVRKLVCAAFN 246 (683)
Q Consensus 184 ~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~-----~~-------~-~~~~~l~~l~~---~~~~~~~~~~~~~~~~l~ 246 (683)
.+.++..+ ..+.....+++.+..++....+. +. . ....++|.++. ...+....+|+.+++++-
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHH
Confidence 55555443 22222223332222222111111 11 0 11123344333 344677889999999999
Q ss_pred HHHhhCccchhh-hHHHHHHHHHHh
Q 005686 247 LLIEVRPSFLEP-HLRNLFEYMLQV 270 (683)
Q Consensus 247 ~l~~~~~~~~~~-~l~~l~~~~~~~ 270 (683)
.+...+++.+.+ .+..++..++..
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpI 1224 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPI 1224 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeec
Confidence 999888876654 556777744433
No 292
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=82.94 E-value=2.6 Score=27.00 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=22.7
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHH
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSV 204 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l 204 (683)
+.+...+...+.|+++.||.+|+..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888889999999999999998753
No 293
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=82.79 E-value=48 Score=32.10 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=43.7
Q ss_pred HHHHHhhccCCCChh-HHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 434 IVAFLIPLLDDKFPL-IRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 434 l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
++..+.+.++..++. .-..||.-++.+.+..+.. ..-.. -..=..+++.++.++++|+-.|..|+..++.
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-----~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-----NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-----HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 566666777655544 3334666677777665532 11111 1233456777888899999999999887653
No 294
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=82.75 E-value=80 Score=34.66 Aligned_cols=351 Identities=16% Similarity=0.123 Sum_probs=167.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHH--HHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCcc---ch
Q 005686 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ--YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS---FL 256 (683)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~ 256 (683)
+|..+..+.+.++.++..|---+..++-.. ......+.+ =++.++.++..+..+|...+|.+|..++-.... .+
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 566777777888777776665555554321 122222222 256777888889999999999999998854322 21
Q ss_pred -hhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCc
Q 005686 257 -EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (683)
Q Consensus 257 -~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~ 335 (683)
.++.+.+...+-..-+..|.+++...-..+-++.++... -...+..-++.+.......- .-|++.+..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l---K~~ii~~al~tLt~~vI~P~---Sgw~~~~~~----- 382 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL---KMLIITSALSTLTDNVIIPH---SGWEEEPAP----- 382 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH---HHHHHHHHHHHHHHhhcccc---cccCCCCcc-----
Confidence 123333333332233446788888887777777665111 11222333333322211110 112111100
Q ss_pred cCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc-------Cc--cchhhhHHHHHHHHccCCCCCh
Q 005686 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-------GD--EILPTLMPVIQAKLSASGDEAW 406 (683)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~-------~~--~~~~~l~~~l~~~l~~~~~~~~ 406 (683)
+..+ + .++-..+..||..++..- ++ ..+..++-.+..++...+.. -
T Consensus 383 ----~~~~--------------~------~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d-~ 437 (717)
T KOG1048|consen 383 ----RKAE--------------D------STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLD-S 437 (717)
T ss_pred ----cccc--------------c------ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcccc-c
Confidence 0000 0 011111223333332211 11 12344555555555432111 3
Q ss_pred hhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhh----CCC-c----c--hh
Q 005686 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI----GHQ-N----G--RE 475 (683)
Q Consensus 407 ~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~-~----~--~~ 475 (683)
+..+.|+-.+..++.-....+.+-..+.....-....-.++. ....|.+.-.+...... -++ . . --
T Consensus 438 K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~L 514 (717)
T KOG1048|consen 438 KSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWL 514 (717)
T ss_pred hhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceee
Confidence 445555556666665544333222222222221111111122 22223333333311100 000 0 0 02
Q ss_pred hHHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHHHhc---ccchHHH---HHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 005686 476 QFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAA---EELAPRL---EIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (683)
Q Consensus 476 ~~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~---~~l~~~l---~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~ 548 (683)
+.+.++..-+..+. ..++.+.++++.||.++..... ..+..-+ +..++.|+.++...++.+.+.+..++.++.
T Consensus 515 w~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls 594 (717)
T KOG1048|consen 515 WHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS 594 (717)
T ss_pred ecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc
Confidence 33445555444444 3467889999999998865432 1122111 345567788888888888888888888876
Q ss_pred HHhccccCchhHHHhhhHHHHHHHhcC
Q 005686 549 DAVGFELNQPVYLDILMPPLIAKWQQL 575 (683)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 575 (683)
...-.. ...-...|+.++..+-..
T Consensus 595 ~d~rnk---~ligk~a~~~lv~~Lp~~ 618 (717)
T KOG1048|consen 595 RDIRNK---ELIGKYAIPDLVRCLPGS 618 (717)
T ss_pred cCchhh---hhhhcchHHHHHHhCcCC
Confidence 643322 123345667777666543
No 295
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=82.72 E-value=3.6 Score=31.66 Aligned_cols=57 Identities=30% Similarity=0.315 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (683)
-..|.+++.+|+.+....+-.+.+++++++..+.....| ...|+..+-.+++.|-+.
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 357999999999999998878888999999988888876 566888888888888653
No 296
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.67 E-value=6.4 Score=37.59 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=49.5
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
..++..+.+.+|.||.+|+.-+..+... +. +....+-...++.+.+.+.+..+ .+.|+.|+.++.+..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~----~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GL----QSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-ch----hhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH
Confidence 3466778899999999998766665543 11 13455667788999999888666 567888888887765
No 297
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=82.13 E-value=8.1 Score=31.92 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=55.1
Q ss_pred hhHHHHHHHHhhccC-CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 429 PHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 429 ~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
.++..++|.+...+. ...+..|.++.-.++.++...+ -..+.+..++..+.+....... ...+..++..++
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~ 73 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETV--QRQALICLIVLC 73 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHH
Confidence 457789999999999 7789999999999999998765 2456666677777666554333 466778888777
Q ss_pred HHh
Q 005686 508 EEA 510 (683)
Q Consensus 508 ~~~ 510 (683)
+.-
T Consensus 74 q~q 76 (121)
T PF12397_consen 74 QSQ 76 (121)
T ss_pred Hcc
Confidence 544
No 298
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.03 E-value=24 Score=30.08 Aligned_cols=78 Identities=14% Similarity=0.003 Sum_probs=58.4
Q ss_pred HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhh-HHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHHH
Q 005686 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEE 509 (683)
Q Consensus 432 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~~ 509 (683)
.+.+..+.+.+++.++.+...|+..|..+.+.++.. .+..+ -..++..+.+.+. ..++.|+..++..+......
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~----fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH----FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH----HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 346778888999999999999999999999987542 12222 2445666666665 35678999999999999888
Q ss_pred hccc
Q 005686 510 AAEE 513 (683)
Q Consensus 510 ~~~~ 513 (683)
++..
T Consensus 116 f~~~ 119 (142)
T cd03569 116 FRNK 119 (142)
T ss_pred hCCC
Confidence 7643
No 299
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=81.76 E-value=72 Score=33.41 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHH-HHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVA-FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l 484 (683)
++.|.+|..+||.++...+. +.+..++. .++..|++.+..=|..|+-++..+++..... ......+.+.+.|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~----~~~~~~~~l~~~L 173 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKER----NPSPPPQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccc----cCCccHHHHHHHH
Confidence 78899999999999987642 23334444 5888899988888999999999999877542 1111135666677
Q ss_pred HHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 485 LKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
...|.++.+..-......+..+-..|
T Consensus 174 ~~~L~~~~~~~Y~El~~~l~~lr~ec 199 (441)
T PF12054_consen 174 LEILENPEPPYYDELVPSLKRLRTEC 199 (441)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 77777554444444444444444443
No 300
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=81.50 E-value=45 Score=31.48 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=75.4
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHhhhC-C---CcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc------
Q 005686 442 LDDKFPLIRSISCWTLSRFSKFIVQDIG-H---QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA------ 511 (683)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~---~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~------ 511 (683)
++|+++.|.+.++.+.+.+-...-..+. . +.....+..+=..++..+.+.++.||..|.+.+..++-...
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 5788888888888887777654332210 0 01223345555667777788889999999999999884420
Q ss_pred -------c-----------------cchHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHHHhccccCchhHHHhhh
Q 005686 512 -------E-----------------ELAPRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILM 565 (683)
Q Consensus 512 -------~-----------------~l~~~l~~i~~~L~~~l~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 565 (683)
. .+..-...++..|+..+.... ......++.+++.++.. +|.|+..++
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~------RP~~~~~Il 155 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ------RPQFMSRIL 155 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH------SGGGHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH------hhHHHHHHH
Confidence 0 011123456677777776654 22333556666666554 457888888
Q ss_pred HHHHHH
Q 005686 566 PPLIAK 571 (683)
Q Consensus 566 ~~l~~~ 571 (683)
+.+...
T Consensus 156 ~~ll~~ 161 (239)
T PF11935_consen 156 PALLSF 161 (239)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 877664
No 301
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=81.49 E-value=49 Score=31.29 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=57.3
Q ss_pred hhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc---------hhh
Q 005686 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP---------SAL 215 (683)
Q Consensus 145 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~---------~~~ 215 (683)
...|..++-+++.+++.-..+.... -.-.+++|.++..+..++.--+..|..++..+..... +-+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~f------Ll~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf 183 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISF------LLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERF 183 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHH------HHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHH------HHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHH
Confidence 4678899999999988544332110 0125788999999988888888888888877764421 111
Q ss_pred HHhHHHHHHHH-HhhhCCCCHHHHHHHHHHHHHHHhh
Q 005686 216 FVSMDQYLQGL-FLLSNDPSAEVRKLVCAAFNLLIEV 251 (683)
Q Consensus 216 ~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (683)
. .+...+..+ ..+..++++.+.+.++.|...+.++
T Consensus 184 ~-av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 184 F-AVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp H-HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred H-HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 1 122222222 2234456666666667666666654
No 302
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=81.48 E-value=3.6 Score=30.16 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhcchhhhhhhHH--HHHHHHhhccC-CCChhHHHHHHHHHHHHHHHHH
Q 005686 408 DREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
..++++++++.++..... .++++ .+++.+++..+ ++...||..|+++||-++....
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~ 61 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE 61 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH
Confidence 468999999999875421 12332 47787777765 6788999999999999987554
No 303
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.38 E-value=1.2e+02 Score=35.84 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=88.5
Q ss_pred CChHHHHHHHHHHHHHHhhcC---cCChHHHHHHHHHHhccC---ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchh
Q 005686 105 ADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (683)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~~---~~~~~~l~~~l~~~l~s~---~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 178 (683)
+-..+|...-.++-.|....+ -..|+.+++.+-..+... ..++.+.+..+|.-++.++-..+. ....
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp-------~sci 926 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP-------TSCI 926 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC-------hHHH
Confidence 444556555577777766542 234999999988766655 345667788888877776544332 1234
Q ss_pred HhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh
Q 005686 179 NIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 179 ~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
..++..+..+... ++..+-..|+..+..+.+++-. .+ ....+..-.....+.+.. +...+.+-
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~----km----------~S~sed~~~~~~~e~~~s--s~~~~~~l 990 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKN----KM----------FSTSEDSCAYNSVEDLYS--SMKSKEIL 990 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHh----hh----------hccchhhhhhcchhhhcc--cccchhhh
Confidence 4555555555433 5667777787777776554311 01 011111111111111111 11111111
Q ss_pred --hhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 258 --PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 258 --~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
..+--++..+.++..|...+||..|.+.+..+...
T Consensus 991 ~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~S 1027 (1610)
T KOG1848|consen 991 PEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNS 1027 (1610)
T ss_pred hhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhh
Confidence 11122344455667888899999999987776554
No 304
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.37 E-value=33 Score=29.21 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHHhh-Hh---HHHHHHHHHHHH
Q 005686 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQ-RR---NLRIVYDAIGTL 547 (683)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~~~-~~---~~~~~~~~l~~l 547 (683)
...-...+..|.+.|...++.++..|+..+..++++||..+...+ ..++..|..++.... .. +...+++.|...
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 344577888899999999999999999999999999987775543 356666777666542 22 566888888888
Q ss_pred HHHhccc
Q 005686 548 ADAVGFE 554 (683)
Q Consensus 548 ~~~~~~~ 554 (683)
....+..
T Consensus 117 ~~~f~~~ 123 (140)
T PF00790_consen 117 AEAFKSD 123 (140)
T ss_dssp HHHTTTS
T ss_pred HHHHCCC
Confidence 8877443
No 305
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.93 E-value=33 Score=28.91 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHHhhH-h-HHHHHHHHHHHHHHHh
Q 005686 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR-R-NLRIVYDAIGTLADAV 551 (683)
Q Consensus 476 ~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~~~~-~-~~~~~~~~l~~l~~~~ 551 (683)
.-...+..|.+.++++++.++..|+..+..++++||..+...+ ..+++.|...+..... . +...+++.+.......
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3466788888899999999999999999999999988765433 3466666666665422 2 5668888888888877
Q ss_pred cc
Q 005686 552 GF 553 (683)
Q Consensus 552 ~~ 553 (683)
+.
T Consensus 114 ~~ 115 (133)
T smart00288 114 KN 115 (133)
T ss_pred cC
Confidence 54
No 306
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=80.67 E-value=5.9 Score=31.50 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=52.9
Q ss_pred hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccC
Q 005686 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (683)
Q Consensus 425 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~ 491 (683)
+.+.++++.++.++...+.+-.+.||..+...|.-+.++.+.. ....+...+++.++..+.-.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~----~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE----LCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH----hHhhhHHHHHHHHHHHHCCC
Confidence 3567899999999999999999999999999999999998764 24667778888888887643
No 307
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=79.23 E-value=1.2e+02 Score=34.39 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=42.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHH-----HhccCCccHHHHHHHHHHHHHHHhcccchHHH
Q 005686 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK-----RILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (683)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~-----~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l 518 (683)
+....||-....++..+.-... ..|-..++..++- ..-+.+..||..+..+|.+++..|....---+
T Consensus 441 ~s~~~Vrik~~~~l~~~~l~nr--------~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~l 512 (1697)
T KOG3687|consen 441 ESRGAVRIKVLDVLSFVLLINR--------QFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSL 512 (1697)
T ss_pred cccceEEEeeHHHHHHHHhhhh--------hhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhH
Confidence 4455566655555555543221 2222333333221 11245678999999999999999865433334
Q ss_pred HHHHHHHHHH
Q 005686 519 EIILQHLMMA 528 (683)
Q Consensus 519 ~~i~~~L~~~ 528 (683)
-.+++.+++.
T Consensus 513 ldi~EA~~~r 522 (1697)
T KOG3687|consen 513 LDIIEAVMAR 522 (1697)
T ss_pred HHHHHHHHhc
Confidence 4444444443
No 308
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=79.20 E-value=2.7 Score=26.37 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.9
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHH
Q 005686 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (683)
Q Consensus 434 l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (683)
.++.+++.+.++++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4677777788889999999999999875
No 309
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=79.06 E-value=7.1 Score=31.06 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=51.1
Q ss_pred cchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHh
Q 005686 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE-LAPRLEIILQHLMMAFGKY 532 (683)
Q Consensus 472 ~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~-l~~~l~~i~~~L~~~l~~~ 532 (683)
...++++.++..+...+..=.+.||..|...|.-+++.+++. +..+...+++.....+...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 456778888888888888778999999999999999999887 6678888888888888754
No 310
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.48 E-value=78 Score=31.85 Aligned_cols=193 Identities=14% Similarity=0.037 Sum_probs=101.9
Q ss_pred HHHHHHHHHhhhhh-cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcccc
Q 005686 90 NQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (683)
Q Consensus 90 ~~~~i~~~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (683)
.-..+.+.+.+.+. |.+.........+++.=........=+.++..+.+.+++..+.+|..-+.+++.++......
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~--- 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS--- 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc---
Confidence 44566677777775 56666666655555544443333444778899999999988889999999999988711100
Q ss_pred CCCCCCcchhHhhHHHHHHhh----cCCCHHHH----HHHHHHHHHHHh-ccchhh-HHhHH---------HH--HHHHH
Q 005686 169 DVPGLAECPINIFLPRLLQFF----QSPHTSLR----KLSLGSVNQFIM-LMPSAL-FVSMD---------QY--LQGLF 227 (683)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~~l----~~~~~~vr----~~a~~~l~~~~~-~~~~~~-~~~~~---------~~--l~~l~ 227 (683)
.. ......++|.+.+.+ .++-+... ..+.-.+. ... ..+..- ..... .+ -+.++
T Consensus 96 ~~----~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvy 170 (339)
T PF12074_consen 96 DS----LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVY 170 (339)
T ss_pred hH----HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHH
Confidence 00 123455666666655 44433221 11111111 100 000000 00000 00 01222
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHHhhcCC--ChHHHHHHhhHHHHhhcc
Q 005686 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDT--DDDVALEACEFWHSYFEA 292 (683)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~ 292 (683)
..+ .+++.....++++..+............ ..+-..++..+-+. ..++|..|++.+..+...
T Consensus 171 skl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 171 SKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred hcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 221 1233445666666666655544433322 33444455555555 788999999999887654
No 311
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=78.14 E-value=37 Score=27.95 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=51.6
Q ss_pred cchhhhHHHHHHHHc-cCCCCChhhHHHHHHHHHHHHhcchhhh-hhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 385 EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 385 ~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
.+++.++|.+.+.+. +.. .+.|.++++.++.++...+ + .+.+..++..+......... ...+..++..++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~---~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSS---PDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred cHHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 456789999999998 555 7899999999999988653 2 24456666777766665544 4556677777764
Q ss_pred H
Q 005686 463 F 463 (683)
Q Consensus 463 ~ 463 (683)
.
T Consensus 75 ~ 75 (121)
T PF12397_consen 75 S 75 (121)
T ss_pred c
Confidence 3
No 312
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.11 E-value=40 Score=28.35 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH--HHHHHHHhhccCC--CChhHHHHHHHHHHHHHH
Q 005686 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDD--KFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~ 462 (683)
-...+..+.+.+.+++ +.+..-|+..+..+...|+..+...+ ..++..+...+.+ .++.|+..++..+..++.
T Consensus 35 ~k~a~r~l~krl~~~n---~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKN---PHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3467788888888888 89999999999999999876553322 2245555555543 334599999999999998
Q ss_pred HHHh
Q 005686 463 FIVQ 466 (683)
Q Consensus 463 ~~~~ 466 (683)
.+..
T Consensus 112 ~f~~ 115 (133)
T smart00288 112 AFKN 115 (133)
T ss_pred HHcC
Confidence 8853
No 313
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=77.91 E-value=45 Score=30.25 Aligned_cols=132 Identities=19% Similarity=0.164 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHhcchh--hhhhhHHHHHHHHhhccCCCChh--HHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHH
Q 005686 407 KDREAAVLALGAIAEGCIK--GLYPHLSEIVAFLIPLLDDKFPL--IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (683)
Q Consensus 407 ~~r~aal~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 482 (683)
++|..|..++..+...... ...|+.+. +...+..++.. .-..+.++..++...+ ....|...++.
T Consensus 22 rvR~~A~~~l~~ll~~~~~~~~~ip~~~~----L~~i~~~~~~~~~~w~~~~~~F~~l~~LL-------~~~~y~~~ll~ 90 (193)
T PF12612_consen 22 RVREVAGKCLQRLLHSQDPTIPHIPHREE----LQDIFPSESEASLNWSSSSEYFPRLVKLL-------DLPEYRYSLLS 90 (193)
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCcHHH----HHHHcccccccccccCCHHHHHHHHHHHh-------ccHHHHHHHHh
Confidence 7899999999988843311 11233322 22222221110 0112333444444333 24678888999
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHHH
Q 005686 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADA 550 (683)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~--~~~~~~~~~~l~~l~~~ 550 (683)
.++-.....+..+...|..||..++... ..-...+..++..++..+++.. ++..-.+++++..+...
T Consensus 91 Glv~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 91 GLVVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 9988888777788888899999888754 2223445666666677776653 23333667777776654
No 314
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=77.20 E-value=12 Score=29.02 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCC--ccHHHHHHHHHHHH
Q 005686 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATL 506 (683)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~--~~v~~~a~~al~~l 506 (683)
++|..+|..|+..++.++..+... ....-+.++..+.+.+.|++ ...+-.|+.+|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~-----~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSS-----YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999887642 34455778888999888765 34566677776665
No 315
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=77.10 E-value=3.8 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.1
Q ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 480 VLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 480 ~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
.++.|.+.++++++.++..++++|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5777888888778999999999999875
No 316
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.77 E-value=1.4e+02 Score=33.88 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=49.1
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (683)
...++.+.....+++..||.+-++...-+.......+..-...++..+..+.+|++++++....+.+..+.+...
T Consensus 277 ~~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq~~ 351 (1014)
T KOG4524|consen 277 NIALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQLH 351 (1014)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHH
Confidence 344455555556677888887777666555444333333333457778888888899999888888777665433
No 317
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=76.49 E-value=38 Score=33.65 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=60.0
Q ss_pred cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH--HHHHHHHhhccC-CCChhHHHHHHHHHHHHH
Q 005686 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLD-DKFPLIRSISCWTLSRFS 461 (683)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~ 461 (683)
..-...+..+.+.+...+ +.+..-|+..++.+...|++.+...+ .+....+...+. ..|+.|+.....++-.++
T Consensus 41 ~~~kd~lk~i~KRln~~d---phV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKD---PHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred cccHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 334478888889998888 99999999999999999987664332 223444445555 678999999989999999
Q ss_pred HHHHh
Q 005686 462 KFIVQ 466 (683)
Q Consensus 462 ~~~~~ 466 (683)
+.++.
T Consensus 118 ee~K~ 122 (462)
T KOG2199|consen 118 EEFKK 122 (462)
T ss_pred HHhcc
Confidence 87764
No 318
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=76.48 E-value=16 Score=29.84 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=55.7
Q ss_pred cCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHh----h--cCCCHHHHHH
Q 005686 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF----F--QSPHTSLRKL 199 (683)
Q Consensus 126 ~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~----l--~~~~~~vr~~ 199 (683)
+....+.+..|.+-+.+.++.+...++.+|..+++.+++.+..++. -..++..++.. . .+.+..||..
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~------~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVA------SNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHH------HhHHHHHHHHhhccccccCCCChHHHHH
Confidence 5677889999999999999999999999999999999986643321 12223333221 1 2347789999
Q ss_pred HHHHHHHHH
Q 005686 200 SLGSVNQFI 208 (683)
Q Consensus 200 a~~~l~~~~ 208 (683)
+...+..+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 988887664
No 319
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=76.04 E-value=21 Score=29.39 Aligned_cols=89 Identities=10% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHHHHHhhc--CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc--C
Q 005686 116 IVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ--S 191 (683)
Q Consensus 116 ~l~~i~~~~--~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--~ 191 (683)
.+..|++.. .+....+++..|.+-+++.++.++..+|.+|..+|..-++.+....+ +. ..++..+.++-. |
T Consensus 21 ~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~----~~-~~~Ik~~~~f~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQ----RN-SAQIRECANYKGPPD 95 (122)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHH----Hh-HHHHHHHHHcCCCCC
Confidence 344444432 44677899999999999999999999999999999887655432110 11 123333333322 1
Q ss_pred ------CCHHHHHHHHHHHHHHHh
Q 005686 192 ------PHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 192 ------~~~~vr~~a~~~l~~~~~ 209 (683)
+...||..|-.++..+..
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 245789888888877654
No 320
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=75.81 E-value=1.3e+02 Score=33.09 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHh-hccC
Q 005686 219 MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY-FEAQ 293 (683)
Q Consensus 219 ~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l-~~~~ 293 (683)
+..+++.|-.+..|+-+.++..++..+..+....|+.= ..|+..++.-+-+++..+...|.-.|..+ +.+|
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 34556666666677778899999999888887777543 23555555666777666666666555554 4443
No 321
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=75.69 E-value=45 Score=28.42 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHH-HHHHHHH-h--hHhHHHHHHHHHHHHHH
Q 005686 477 FEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQH-LMMAFGK-Y--QRRNLRIVYDAIGTLAD 549 (683)
Q Consensus 477 ~~~~l~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~-L~~~l~~-~--~~~~~~~~~~~l~~l~~ 549 (683)
-...+..|.+.++ ..++.++..|+..+..++++||..+...+ ..+++. |.+.+.. . ...+...+++.|.....
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3567778888887 45788999999999999999997765432 245554 5555542 1 23456678888888887
Q ss_pred Hhccc
Q 005686 550 AVGFE 554 (683)
Q Consensus 550 ~~~~~ 554 (683)
..+.+
T Consensus 116 ~f~~~ 120 (141)
T cd03565 116 AFRGS 120 (141)
T ss_pred HhCCC
Confidence 76543
No 322
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=74.79 E-value=82 Score=30.21 Aligned_cols=173 Identities=15% Similarity=0.128 Sum_probs=98.9
Q ss_pred CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCC-CCCCcchhHhhHHHHHHhhcCCC-----HHHHHHH
Q 005686 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV-PGLAECPINIFLPRLLQFFQSPH-----TSLRKLS 200 (683)
Q Consensus 127 ~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~l~~~~-----~~vr~~a 200 (683)
+.|+++-+.+.+.+.+++. -+.++..+..+.......+.+.. .++. -.+-..+|.++..+.+++ +.++. +
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll-~~~la~LP~ll~~~d~~~~i~~~~~~~~-~ 135 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLL-FLLLALLPRLLHAFDDPNPIQPDQECIE-I 135 (262)
T ss_pred CCchhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHH-HHHHHHHHHHHHHhcccccccccHHHHH-H
Confidence 7888999999999987653 35677888887776554433221 1111 234567888888888877 34443 3
Q ss_pred HHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHH
Q 005686 201 LGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVAL 280 (683)
Q Consensus 201 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~ 280 (683)
...+..+++..+ .+.+..++..+.+..-....+....++..+. +.+ +..|-..++.+++..+.+....+|.
T Consensus 136 A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~v~~~l~---~~f---~P~~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 136 AEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQVVSYLR---EAF---FPDHEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HHh---CchhHHHHHHHHHHHHhCCcHHHHH
Confidence 355555553321 2334444444433222222333333333333 222 1233345677777777777778999
Q ss_pred HHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcc
Q 005686 281 EACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (683)
Q Consensus 281 ~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~ 315 (683)
.++.++..+...-... +|+...++..+++.+.
T Consensus 207 ~~L~iL~~ll~~~d~~---~~~~~dlispllrlL~ 238 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMR---SPHGADLISPLLRLLQ 238 (262)
T ss_pred HHHHHHHHHhccccCC---CCcchHHHHHHHHHhC
Confidence 9999998887652111 3355566666665553
No 323
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=74.64 E-value=59 Score=28.48 Aligned_cols=147 Identities=12% Similarity=0.111 Sum_probs=68.0
Q ss_pred hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhh----hhHHHHHHHHhhccCCCChhHHHHHHHHHHHHH-HH
Q 005686 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY----PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS-KF 463 (683)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~ 463 (683)
.+-|.+..+++.++ .++.....|+.+.......+- .--.++...++..- ...+ ..|+.....+. ..
T Consensus 3 eikplLIsCL~~q~-----~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l 73 (174)
T PF04510_consen 3 EIKPLLISCLTMQE-----TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPL 73 (174)
T ss_pred chHHHHHHHHHhhc-----ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchh
Confidence 35567777777644 234445555554443321111 11122333333322 2222 23555555555 22
Q ss_pred HHhhhCCCcchhhHHHHHHHHHHHhccCC-ccHHH--HHH-HHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHhhH
Q 005686 464 IVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQE--AAC-SAFATLEEEAA-----EELAPRLEIILQHLMMAFGKYQR 534 (683)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~l~~~l~d~~-~~v~~--~a~-~al~~l~~~~~-----~~l~~~l~~i~~~L~~~l~~~~~ 534 (683)
... ...++++.+++.+.+.|.++. ..+.. -|. .++...++-.. +.++..++.+++.+..+++...+
T Consensus 74 ~~e-----fl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E 148 (174)
T PF04510_consen 74 YGE-----FLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGME 148 (174)
T ss_pred hhh-----HHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 222 356778888888888888763 23332 221 22222333222 22334444455555555554444
Q ss_pred -hHHHHHHHHHHHHHH
Q 005686 535 -RNLRIVYDAIGTLAD 549 (683)
Q Consensus 535 -~~~~~~~~~l~~l~~ 549 (683)
.-...+++-+..++.
T Consensus 149 ~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 149 VGFLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 334455555555443
No 324
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=74.62 E-value=1.3e+02 Score=32.45 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=56.1
Q ss_pred hcCccchhhhHHHHHHHHcc-CCCCChhhHHHHHHHHHHHHhcc-hhhhh-hhHHHHHHHHhhccCCCChhHHHHHHHHH
Q 005686 381 VFGDEILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGC-IKGLY-PHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (683)
Q Consensus 381 ~~~~~~~~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~-~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (683)
.+....+..++-.+...+.+ +. -..|-+.+..++.+++.. ++... +..+.+....-..|.|.|+.++..|+.+.
T Consensus 471 ~l~~~~i~qv~~~l~~l~~~~pp---~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF 547 (559)
T PF14868_consen 471 LLDPQLIEQVLTELTSLFKSEPP---DHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAF 547 (559)
T ss_pred hcChHHHHHHHHHHHHHHhhCCC---ccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 33444455666666777744 33 458888888888888754 33333 34455555555567899999999999999
Q ss_pred HHHHHHHH
Q 005686 458 SRFSKFIV 465 (683)
Q Consensus 458 ~~l~~~~~ 465 (683)
|+|++...
T Consensus 548 ~~FAe~T~ 555 (559)
T PF14868_consen 548 GQFAERTS 555 (559)
T ss_pred HHHhccCC
Confidence 99998643
No 325
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=73.79 E-value=5.1 Score=22.68 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 005686 449 IRSISCWTLSRFSK 462 (683)
Q Consensus 449 vr~~a~~~l~~l~~ 462 (683)
||..|+++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999999964
No 326
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=73.68 E-value=60 Score=28.13 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcC--CC--CCcc---hhhHHhHHHHHHHHhccccccchHHHHHHH
Q 005686 539 IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--PN--SDKD---LFPLLECFTSIAQALGAGFTQFAQPVFQRC 611 (683)
Q Consensus 539 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~--~~~~---~~~~~~~l~~l~~~~g~~f~~~~~~~~~~l 611 (683)
.+.+++-.++..+.+..++| .+-+++ + |... .. .... .....+.+..++..++.-|.||...+++.+
T Consensus 40 ~v~~~~~~lV~KLnE~~FRP-lF~~l~----d-WA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~ 113 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRP-LFLKLV----D-WATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNA 113 (153)
T ss_pred HHHHHHHHHHHHcccchhHh-HHHHHH----H-HHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888877665554 444433 3 3321 11 1111 124566777888888889999999999999
Q ss_pred HHHHHHHHH
Q 005686 612 INIIQTQQL 620 (683)
Q Consensus 612 ~~~l~~~~~ 620 (683)
..+|+....
T Consensus 114 ~~~L~~~~~ 122 (153)
T PF08146_consen 114 VDLLKQFNS 122 (153)
T ss_pred HHHHHHhhh
Confidence 999987643
No 327
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=73.55 E-value=94 Score=34.59 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhc-CCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHh
Q 005686 235 AEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLS 312 (683)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~ 312 (683)
+..|..++..|+.++...|.++...+. .++.-+++++. |.+..+...|+.+|..+.=. .+..+.++++.++.+...
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~--ip~~l~~~L~~Lf~If~R 159 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH--IPSSLGPHLPDLFNIFGR 159 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHH
Confidence 467889999999999999988765554 67777777764 55666777788877776533 556678888888887654
Q ss_pred hc
Q 005686 313 NM 314 (683)
Q Consensus 313 ~l 314 (683)
.+
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 43
No 328
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=72.53 E-value=53 Score=27.05 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHH
Q 005686 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE 519 (683)
Q Consensus 475 ~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~ 519 (683)
.-+..++..|.+.|++.++.|+..++..|..+|+...+.+...+.
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~ 78 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQ 78 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHH
Confidence 456788999999999999999999999999999987666554443
No 329
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.51 E-value=2.3e+02 Score=34.38 Aligned_cols=236 Identities=14% Similarity=0.114 Sum_probs=120.1
Q ss_pred CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc--
Q 005686 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-- 124 (683)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-- 124 (683)
.+++...-.+... +.+.++|-..+-+....++..|..+- ..+-.+-.+.+..+-...-..+..+....
T Consensus 1035 ~~fl~Pfe~im~~--s~s~~Irelv~rC~~~nikSGWk~if--------~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~ 1104 (1514)
T KOG0929|consen 1035 KDFLRPFEHIMKR--SSSAEIRELVVRCISSNIKSGWKNIF--------KIFTTAASDSSKNIVELAFETVSKILQELFE 1104 (1514)
T ss_pred HhhcCcchHHhhc--cCcchhHHHHHhhhhhhhhhhhhHHH--------HHHHHhhccchhhHHHHhHHHHHHHHHHhhh
Confidence 3444444555553 77888998888888777888887621 11111112233344333333333333322
Q ss_pred --Cc---CChHHHHHHHHHHhcc-CChhHHhHHHHHHHHHHhhchhc-cccCCC----CCCcchhHhhHHHHHHh---hc
Q 005686 125 --GI---AGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQV-LDSDVP----GLAECPINIFLPRLLQF---FQ 190 (683)
Q Consensus 125 --~~---~~~~~l~~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~-~~~~~~----~~~~~~~~~i~~~l~~~---l~ 190 (683)
.+ ..+.+.++.+.....+ ..+..-..++..+..++....+. ..+... ..........+|.+..+ ..
T Consensus 1105 ~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~ 1184 (1514)
T KOG0929|consen 1105 NVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIIN 1184 (1514)
T ss_pred hhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhh
Confidence 22 2233444444444432 22222233333333333332222 000000 00011223444544432 33
Q ss_pred CCCHHHHHHHHHHHHHHHhccchhhHHh-HHHHHHHHHhhhC----CCC------H--HHHHHHHHHHHHHHhhCccchh
Q 005686 191 SPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSN----DPS------A--EVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 191 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~----~~~------~--~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
+....+|..+++.+..+...-++.+.+. ...+...++...+ +.+ + ..-..|+..+..+...+.+.+.
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~ 1264 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLN 1264 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999988876555444332 2233333333221 111 1 1223455666666677777777
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
..++.++..+..+.+.++..+......++..+...
T Consensus 1265 ~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~ 1299 (1514)
T KOG0929|consen 1265 NLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSS 1299 (1514)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHh
Confidence 77788888888888877777777777777776554
No 330
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=72.45 E-value=35 Score=33.93 Aligned_cols=110 Identities=12% Similarity=0.044 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (683)
|.....+|.-++.-.. --...+..+.+.+++.++.|...|+..++.+...|+.-+ ....-...+...+.
T Consensus 26 W~~IlDvCD~v~~~~~--------~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~---r~EVsSr~F~~el~ 94 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDPD--------GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRF---RLEVSSRDFTTELR 94 (462)
T ss_pred HHHHHHHHHhhcCCCc--------ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHH---HHHHhhhhHHHHHH
Confidence 9887776665543222 223467888899999999999999999999999887532 11122234445555
Q ss_pred HHhc-cCCccHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHH
Q 005686 486 KRIL-DTNKRVQEAACSAFATLEEEAAEE-LAPRLEIILQHLM 526 (683)
Q Consensus 486 ~~l~-d~~~~v~~~a~~al~~l~~~~~~~-l~~~l~~i~~~L~ 526 (683)
..+. ...+.|+......+..+.+.++.+ -...+..+++.|.
T Consensus 95 al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk 137 (462)
T KOG2199|consen 95 ALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKLK 137 (462)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 5555 345788888888888888877543 2233444444443
No 331
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=70.14 E-value=49 Score=30.02 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=86.6
Q ss_pred hHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCc--cHHHHHHHHHHHHH
Q 005686 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK--RVQEAACSAFATLE 507 (683)
Q Consensus 430 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~--~v~~~a~~al~~l~ 507 (683)
.+.+++..+++..-..-.+||..|..++.++...-... .++++ -.+.+...+..+.. ..-..+..++..++
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~------~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~ 76 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPT------IPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLV 76 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------ccCCC-cHHHHHHHcccccccccccCCHHHHHHHHH
Confidence 34556666666666666789999999999987322110 01111 11233333332211 11222344444444
Q ss_pred HHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcchhhHHh
Q 005686 508 EEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLE 587 (683)
Q Consensus 508 ~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 587 (683)
.-+ .+..|-..++.+++.-.+...+...+.+..++-..+...... +.-+..++..+...+++...+++-...+++
T Consensus 77 ~LL--~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~---~~~~~~v~~~l~~il~~~~~~dRv~vP~l~ 151 (193)
T PF12612_consen 77 KLL--DLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDS---PEELEQVLSDLLSILKENLRNDRVVVPLLK 151 (193)
T ss_pred HHh--ccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHhCCCCCeeecHHH
Confidence 322 223677888888888777766666666666666665543221 246677777888888765544554457777
Q ss_pred HHHHHHHH
Q 005686 588 CFTSIAQA 595 (683)
Q Consensus 588 ~l~~l~~~ 595 (683)
++..+...
T Consensus 152 tl~~Ll~~ 159 (193)
T PF12612_consen 152 TLDFLLSS 159 (193)
T ss_pred HHHHHHhC
Confidence 77776653
No 332
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=69.68 E-value=1.1e+02 Score=29.41 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=80.5
Q ss_pred hHHHHHHHHccCCCCC-hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHH-hhccCCCChhHHHHHHHHHHHHHHHHHhh
Q 005686 390 LMPVIQAKLSASGDEA-WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFL-IPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (683)
Q Consensus 390 l~~~l~~~l~~~~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (683)
.+|.+...+.++.... -.....+...++.+++..+ .+.+..++... .+.+++....++. .+.++...
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~--------v~~~l~~~ 180 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQ--------VVSYLREA 180 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHH--------HHHHHHHH
Confidence 4566666665543000 1223344455666664321 23455555433 3334444433333 33333321
Q ss_pred hCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 005686 468 IGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (683)
Q Consensus 468 ~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l 547 (683)
....+--+++..++..+.+.-+.+|......|..++....-. .|+...++..+.+.++.. -...|++.+..+
T Consensus 181 ----f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~---~~~eAL~VLd~~ 252 (262)
T PF14225_consen 181 ----FFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD---LWMEALEVLDEI 252 (262)
T ss_pred ----hCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc---cHHHHHHHHHHH
Confidence 134555667777888888777889999999999888765322 346666777777777643 233566666666
Q ss_pred HHHhcc
Q 005686 548 ADAVGF 553 (683)
Q Consensus 548 ~~~~~~ 553 (683)
+...|.
T Consensus 253 v~~s~s 258 (262)
T PF14225_consen 253 VTRSGS 258 (262)
T ss_pred Hhhccc
Confidence 666554
No 333
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=69.31 E-value=1.3e+02 Score=30.29 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 005686 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLM 526 (683)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~ 526 (683)
..+......+|+.+..+-..+ .+..-+.++..+..++.+ +....+..||.--|-+.+..+.++++.++..|.
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~~-----~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs 282 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSHF-----SKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLS 282 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345556667777777654432 233346778888777765 334556777777777778888999999988776
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHH
Q 005686 527 MAFGKYQRRNLRIVYDAIGTLAD 549 (683)
Q Consensus 527 ~~l~~~~~~~~~~~~~~l~~l~~ 549 (683)
+...... .--.++|-++.++.
T Consensus 283 ~i~tt~~--~Ai~ILEFLs~L~~ 303 (356)
T PF03542_consen 283 KISTTPN--MAIHILEFLSSLSR 303 (356)
T ss_pred hhccchh--hHHHHHHHHHHHhh
Confidence 6554321 11145666665554
No 334
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=68.89 E-value=95 Score=29.69 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=87.3
Q ss_pred cccHHHHHHHHHHHHHhhcC------c-----cchhhhHHHHHHHHc-cCCCCChhhHHHHHHHHHHHHhcch----hhh
Q 005686 364 VWNLRKCSAAALDVLSNVFG------D-----EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCI----KGL 427 (683)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~------~-----~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~----~~~ 427 (683)
.|..-+.+..+++.++...+ . +.+..+...+...|. -.+ ...-+.+..++..++..+- ..+
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rH---rGAfe~~~~~f~~lc~~l~~~~~~~l 136 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRH---RGAFESVYPGFTALCRRLWSSNNPEL 136 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHhcCCCchH
Confidence 56555666677777775431 1 223344444444443 344 4555666667777766553 222
Q ss_pred hhhHHHHHHHHhhccCCC-Ch---hHHHHHH--HHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCC--------c
Q 005686 428 YPHLSEIVAFLIPLLDDK-FP---LIRSISC--WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--------K 493 (683)
Q Consensus 428 ~~~~~~l~~~l~~~l~d~-~~---~vr~~a~--~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~--------~ 493 (683)
...-..-+..++..+.+. .. ..|+.|- .++..+...- +......+...+..|++....+. .
T Consensus 137 ~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae-----~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d 211 (255)
T PF10350_consen 137 SELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAE-----PSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSD 211 (255)
T ss_pred HHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcC-----CCcchhHHHHHHHHHHHHhcCCcccccccccc
Confidence 222233444555555544 21 4555542 1222222211 11223778888999988877543 2
Q ss_pred cHHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHH
Q 005686 494 RVQEAACSAFATLEEEA--AEELAPRLEIILQHLMM 527 (683)
Q Consensus 494 ~v~~~a~~al~~l~~~~--~~~l~~~l~~i~~~L~~ 527 (683)
.-|.+|...|..+..+. +..+.+|+...+..-+.
T Consensus 212 ~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~ 247 (255)
T PF10350_consen 212 LPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIK 247 (255)
T ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 47889999999998765 67788888877654433
No 335
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=68.66 E-value=1.4e+02 Score=30.42 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=47.3
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhh-----CCCCHHHHHHHHHHHHHHHh
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-----NDPSAEVRKLVCAAFNLLIE 250 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~~~~~~~~~l~~l~~ 250 (683)
+++++.+...+.+.+......+.-+++.++.....-..---..+++.++..+ -|++..+..+++.+|..++-
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 4578888888999999999999999999987643211111123455555433 24555666777888877753
No 336
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=68.52 E-value=1.4e+02 Score=30.18 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhc
Q 005686 193 HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK 272 (683)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~ 272 (683)
..++....+.+|..++.+-...-...-++++..+...+.+ ...+.++.+|.-.+-..|..+.++++.++.-+.+...
T Consensus 210 ~~D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t 286 (356)
T PF03542_consen 210 RADLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 3567778888888887653211122233556666665544 2335566677666777788888888888877655544
Q ss_pred CCChHHHHHHhhHHHHhhccC-Cch-hhHHhhhhhhHHHHHhhcc
Q 005686 273 DTDDDVALEACEFWHSYFEAQ-LPH-ENLKEFLPRLVPVLLSNMI 315 (683)
Q Consensus 273 ~~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~~l~~l~~~l~~~l~ 315 (683)
.. .+..-.+||+..+++.| ... +........++.++++++.
T Consensus 287 t~--~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 287 TP--NMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred ch--hhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 33 34556889999998875 322 2223445567777776654
No 337
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=67.67 E-value=2.8e+02 Score=33.49 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhh--hHHHHHHHHhhccCCC----ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH--
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYP--HLSEIVAFLIPLLDDK----FPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-- 477 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-- 477 (683)
-..-.+.+.+|..++.+|.+.... .++..+.+++..|... .-.+...|-..|-..+.++..- +...+.+
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~---E~yRQILR~ 528 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC---EDYRQILRR 528 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc---chHHHHHHH
Confidence 356778888999998888543322 2344667777777543 2333344433333334333210 1122222
Q ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
..++..|+..|++.+-.|...+|.+|.++...+
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~ 561 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARS 561 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCC
Confidence 457888888899888889999999999987554
No 338
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=67.62 E-value=8.2 Score=22.31 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHh
Q 005686 406 WKDREAAVLALGAIAE 421 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~ 421 (683)
|.+|..+..+|+.+..
T Consensus 1 ~~vR~~aa~aLg~~~~ 16 (30)
T smart00567 1 PLVRHEAAFALGQLGD 16 (30)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 6789999999998743
No 339
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=66.44 E-value=11 Score=38.91 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHhcchhhhhhhH--HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHH
Q 005686 408 DREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGL 484 (683)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l 484 (683)
.-.|++.+|-+++....- ++.-+ ..+...+++.|.+++.+|...+...+..+.-.+.+. ...++ ..++..+
T Consensus 405 ~~~a~~l~LkS~SrSV~~-LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL-----~~~fL~~~iIdvl 478 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTF-LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNL-----GAGFLEKSIIDVL 478 (743)
T ss_pred HHHHHHHHHHHhhHHHHH-HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccch-----HHHHHHhhHHHHH
Confidence 345566666666654321 11111 125677888888888777766654444443322221 22233 4466677
Q ss_pred HHHhccCCccHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q 005686 485 LKRILDTNKRVQEAACSAFATLEEEAA--EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (683)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~--~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (683)
.+++...+...|....|.+..+.-+|. +.+++....-+..++...+++...++..+++.+-++.-
T Consensus 479 ~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 479 VNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred HHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 777776677889999999999988885 35667666778888999998888888888888887755
No 340
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=64.41 E-value=34 Score=31.12 Aligned_cols=66 Identities=15% Similarity=0.309 Sum_probs=47.1
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHH
Q 005686 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
+.+.+...+++. |..|.+ +.++...... ..+.+.+++.+-..+.|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~--~~rR~~-~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENE--WVRRAA-IVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcH--HHHHHH-HHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 667777777662 555555 4444333321 34567788888888899999999999999999988644
No 341
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.71 E-value=1.6e+02 Score=29.09 Aligned_cols=134 Identities=14% Similarity=0.111 Sum_probs=76.7
Q ss_pred HHHHHHHHccCCCCChhhHHH---HHHHHHHHHhcch--hhh-h-hhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 005686 391 MPVIQAKLSASGDEAWKDREA---AVLALGAIAEGCI--KGL-Y-PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~a---al~~l~~l~~~~~--~~~-~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (683)
+..+.+++.+.+. -..|.. ++..|..++..-. ..+ . .-.+.++...... ..+|.|-..++-+++.++-.
T Consensus 285 l~tl~~~i~d~n~--~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR 360 (461)
T KOG4199|consen 285 LDTLLRCIDDSNE--QGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH--SDDPLVIQEVMAIISILCLR 360 (461)
T ss_pred HHHHHHHHhhhch--hhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc--CCChHHHHHHHHHHHHHHhc
Confidence 3445566665321 445544 4555555554321 111 1 1223333333333 35688999999999888865
Q ss_pred HHhhhCCCcchhhHHHH-HHHHHHHhcc-C-CccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh
Q 005686 464 IVQDIGHQNGREQFEKV-LMGLLKRILD-T-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ 533 (683)
Q Consensus 464 ~~~~~~~~~~~~~~~~~-l~~l~~~l~d-~-~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~ 533 (683)
.+. ....+++.- -...++.|+- + ...|+..||+.|.+++....+.-.+.+..-++.|+..-....
T Consensus 361 ~pd-----hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h 428 (461)
T KOG4199|consen 361 SPD-----HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANH 428 (461)
T ss_pred Ccc-----hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcC
Confidence 442 223333322 2223444442 2 356999999999999988877777888888887777665543
No 342
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=63.47 E-value=2.1e+02 Score=30.61 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=72.1
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCcc--chhhhHHHH
Q 005686 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS--FLEPHLRNL 263 (683)
Q Consensus 186 ~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~l 263 (683)
+....|.++.+|..++..++.++...|+.+.... ++...--.+.|.+..+|..+.+.+..++...|. .+...+..+
T Consensus 281 vsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRF 358 (740)
T COG5537 281 VSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERF 358 (740)
T ss_pred hhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4456677899999999999999988887655432 344444467788899999999999999887653 344555555
Q ss_pred HHHHHHhhcCCChHHHHHHhhHHHHhhc
Q 005686 264 FEYMLQVNKDTDDDVALEACEFWHSYFE 291 (683)
Q Consensus 264 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 291 (683)
-..+++.+....+-||..++..+..+-.
T Consensus 359 k~rILE~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 359 KDRILEFLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 5555555443333388888776655533
No 343
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=63.11 E-value=2.9e+02 Score=32.03 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=83.1
Q ss_pred HHhHHHHHHHHHHhhchhc---cccCCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccch--hhHHhHH
Q 005686 147 HMEGAMDALSKICEDIPQV---LDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPS--ALFVSMD 220 (683)
Q Consensus 147 ~r~~al~~l~~l~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~ 220 (683)
..+.++.+|..++...++. +.++ ..+-..++.++..+.. +++.+...|+..+..+..+-+- .+...
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe------~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-- 1812 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSE------ILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-- 1812 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccch------hhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh--
Confidence 4567899999999887753 2221 2233456667776655 6788999999988877655331 11111
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHH--HHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
..+..|+.++. .-+..|..++.+|..+.+.. +....-+. .++.+.-..+.+..+..|..|.+.+..+...
T Consensus 1813 ~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1813 NVLTTLLTLLH-SQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred hHHHHHHHHHh-cChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 23445555554 35788999999998876542 22222111 1222222234556788999999999887544
No 344
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=62.71 E-value=99 Score=26.88 Aligned_cols=124 Identities=11% Similarity=0.123 Sum_probs=73.7
Q ss_pred HhHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHHhc---------CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 005686 12 QGFNEICRLLEQQISPS---STADKSQIWQQLQQYSQ---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL 79 (683)
Q Consensus 12 ~~~~~l~~~l~~~~s~~---~~~~r~~A~~~L~~~~~---------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i 79 (683)
+++..|.+.++.....+ .+ .-.-+.+.+.++-+ .+.|+......+.. ...+..+-+.|.-.|.+.+
T Consensus 11 ~Gl~~L~~~iE~g~~~~~~~~~-~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~-~~~d~~i~q~sLaILEs~V 88 (160)
T PF11841_consen 11 DGLTLLIKMIEEGTEIQPCKGE-ILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNS-SAMDASILQRSLAILESIV 88 (160)
T ss_pred cCHHHHHHHHHcCCccCcchHH-HHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcc-ccccchHHHHHHHHHHHHH
Confidence 35667777777654311 12 44445555555322 34566666655542 2447888888888888888
Q ss_pred HHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHH
Q 005686 80 RTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALV 137 (683)
Q Consensus 80 ~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~ 137 (683)
.+.-.....-.++--.+.|+..|..+++.++..+...+-.+..+.++..+.++...+.
T Consensus 89 l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~ 146 (160)
T PF11841_consen 89 LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLS 146 (160)
T ss_pred hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 5421111111112223467778888889999888777777777666677776665553
No 345
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=61.19 E-value=19 Score=23.59 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc
Q 005686 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (683)
Q Consensus 89 ~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~ 124 (683)
...+++|+.+++.|...++..|..+..+|+++.+..
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 456889999999998777888888888888887653
No 346
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=61.17 E-value=2.4e+02 Score=30.32 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=55.3
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhH
Q 005686 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (683)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~ 307 (683)
....|-++.+|..+...+...+...|+.+.... .+...--.+.|.+..+|......+..+++.......+..++++..
T Consensus 282 sRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk 359 (740)
T COG5537 282 SRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFK 359 (740)
T ss_pred hhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 345566777888888888888887777654322 233322345677888999999999998887333345556666655
Q ss_pred HHHHhhc
Q 005686 308 PVLLSNM 314 (683)
Q Consensus 308 ~~l~~~l 314 (683)
..++..+
T Consensus 360 ~rILE~~ 366 (740)
T COG5537 360 DRILEFL 366 (740)
T ss_pred HHHHHHH
Confidence 5554443
No 347
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=60.25 E-value=2.6e+02 Score=30.59 Aligned_cols=178 Identities=13% Similarity=0.022 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHHHHHhhcC--------cCChHHHHHHHHHH----hccCChhHHhHHHHHHHHHHhhchhccccCCCC
Q 005686 105 ADRHIRSTVGTIVSVVVQLGG--------IAGWLELLQALVTC----LDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (683)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~~--------~~~~~~l~~~l~~~----l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (683)
+...+|..++.++..+....- .++-..++..+.+. .+|.+..+|..++..+..+....+......+-.
T Consensus 208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ 287 (993)
T COG5234 208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID 287 (993)
T ss_pred cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH
Confidence 455667777778877765431 22344455444444 455677889999999999988887654321100
Q ss_pred CCcchhHhhHHH-HHHhhcC------CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhC------C--CCHHH
Q 005686 173 LAECPINIFLPR-LLQFFQS------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN------D--PSAEV 237 (683)
Q Consensus 173 ~~~~~~~~i~~~-l~~~l~~------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~------~--~~~~~ 237 (683)
..+...+. +++.++. +++-+-..++..++ ++...+-++.+-+ +.+.+...+. . ....+
T Consensus 288 ----ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~I 360 (993)
T COG5234 288 ----IIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSI 360 (993)
T ss_pred ----HHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeecccee
Confidence 00111111 2233333 23334444443333 3333222222111 1111111110 1 11256
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHH-HHHHHHH-hhcCCChHHHHHHhhHHHHh
Q 005686 238 RKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQ-VNKDTDDDVALEACEFWHSY 289 (683)
Q Consensus 238 ~~~~~~~l~~l~~~~~~~~~~~l~~-l~~~~~~-~~~~~~~~vr~~a~~~l~~l 289 (683)
|..++-.+..+...+...+.+.++. ++-++++ .+-|++-.+|..|..++..+
T Consensus 361 Rdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~ 414 (993)
T COG5234 361 RDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEV 414 (993)
T ss_pred ecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHH
Confidence 7777766666766655555555654 3444444 56788888898887766554
No 348
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=60.22 E-value=87 Score=26.65 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=25.7
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~ 208 (683)
+.+-..+...+.+++++|+..|++|+..+-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 556667889999999999999999998763
No 349
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.16 E-value=88 Score=32.73 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=73.7
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHh
Q 005686 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (683)
Q Consensus 101 ~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (683)
.+.++++..--.+|..|.. ....-++.+..|.+.+++.++.+...|+.+|..+++.|++.|..++ .-..
T Consensus 13 ~l~~pDWa~NleIcD~IN~-----~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~V------a~k~ 81 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINS-----TEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQV------ASKE 81 (470)
T ss_pred cccCccHHHHHHHHHHHhc-----CccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHH------HHHH
Confidence 3445666665544443321 1233468889999999988889999999999999999999775432 1356
Q ss_pred hHHHHHHhhcC--CCHHHHHHHHHHHHHHHhccch
Q 005686 181 FLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPS 213 (683)
Q Consensus 181 i~~~l~~~l~~--~~~~vr~~a~~~l~~~~~~~~~ 213 (683)
+++.++..... .+..||..++..|..|.+.++.
T Consensus 82 fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 82 FLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 77777777765 4679999999999999876543
No 350
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=59.46 E-value=1.6e+02 Score=27.82 Aligned_cols=87 Identities=15% Similarity=0.330 Sum_probs=58.1
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhccch---------------h---------------hHHhHHHHHHHHHhhh
Q 005686 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---------------A---------------LFVSMDQYLQGLFLLS 230 (683)
Q Consensus 181 i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~---------------~---------------~~~~~~~~l~~l~~~~ 230 (683)
+=..+++.+.+.++.+|..++|.+..++..... + +...-..++..|+..+
T Consensus 44 lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l 123 (239)
T PF11935_consen 44 LKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVL 123 (239)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 334566678888999999999999888643210 0 1111225677777777
Q ss_pred CCCC--HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHH
Q 005686 231 NDPS--AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYM 267 (683)
Q Consensus 231 ~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~ 267 (683)
.++. ......++.+|..++...|.++...++.+..+-
T Consensus 124 ~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~ 162 (239)
T PF11935_consen 124 QSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFN 162 (239)
T ss_dssp C-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 6544 667778889999999999988765555555543
No 351
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=58.93 E-value=1.1e+02 Score=25.88 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=65.9
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc-cc
Q 005686 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EE 513 (683)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~ 513 (683)
+..+++.|+-+...+.++|..+|-. ...-+.+.+.+++.+.+++-..|......+..+++.+. ..
T Consensus 10 F~~~L~~L~aS~qSi~kaa~fAlk~--------------~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~ 75 (139)
T PF12243_consen 10 FTQLLRRLNASQQSIQKAAQFALKN--------------RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSK 75 (139)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHc--------------cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666677777655544 22335667778888888888889999999999998873 22
Q ss_pred --chHHHHHHHHHHHHHHHHhh----H--hHHHHHHHHHHHHHH
Q 005686 514 --LAPRLEIILQHLMMAFGKYQ----R--RNLRIVYDAIGTLAD 549 (683)
Q Consensus 514 --l~~~l~~i~~~L~~~l~~~~----~--~~~~~~~~~l~~l~~ 549 (683)
-.+|...+-..|..++...- + .++..+..+|..+-.
T Consensus 76 ~~~~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~ 119 (139)
T PF12243_consen 76 KYNYPYVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSK 119 (139)
T ss_pred cccchhHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHH
Confidence 56787777666666665421 1 344455555555544
No 352
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=57.94 E-value=1e+02 Score=25.03 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=51.0
Q ss_pred cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHH--HHHHHhh----cc--CCCChhHHHHHHHH
Q 005686 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIP----LL--DDKFPLIRSISCWT 456 (683)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~--l~~~l~~----~l--~d~~~~vr~~a~~~ 456 (683)
.....++..+.+.+.+.+ |++..-|+..+-.+...+++.+..++.. .+..++. .. .+.+..||..+..+
T Consensus 33 ~~~~~~~~~l~kRl~~~~---~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l 109 (115)
T cd00197 33 VGPKEAVDAIKKRINNKN---PHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIEL 109 (115)
T ss_pred ccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHH
Confidence 445678888888898887 9999999999999999987665443322 1112211 11 24578899988877
Q ss_pred HHHH
Q 005686 457 LSRF 460 (683)
Q Consensus 457 l~~l 460 (683)
+..+
T Consensus 110 ~~~w 113 (115)
T cd00197 110 VQLW 113 (115)
T ss_pred HHHH
Confidence 6654
No 353
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=57.88 E-value=1.6e+02 Score=27.18 Aligned_cols=181 Identities=11% Similarity=0.045 Sum_probs=106.5
Q ss_pred CHHhHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHHhcC-CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 005686 10 QEQGFNEICRLLEQQIS----PSSTADKSQIWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (683)
Q Consensus 10 ~~~~~~~l~~~l~~~~s----~~~~~~r~~A~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~ 84 (683)
+|+....+...+..... +.++ .|+-|...+...... .+....|..-|-. +..-+.|..|+.++.... .
T Consensus 3 ~~~~a~~m~~y~k~~~~f~Gv~~P~-~R~lak~~~~~~~~~~~~~~~~l~~~Lw~--~~~~E~r~~al~~l~~~~----~ 75 (208)
T cd07064 3 DPERAAAMKAYMKNQFPFYGIKTPE-RRALSKPFLKESKLPDKEELWELVLELWQ--QPEREYQYVAIDLLRKYK----K 75 (208)
T ss_pred CHHHHHHHHHHHhcCCccCCCChHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHH----h
Confidence 44444444444443221 2344 777777777766543 3444444444432 445688988888776542 2
Q ss_pred cCCHhHHHHHHHHHhhhhhcCChHHHHHH-HHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 005686 85 SMSPSNQQYIKSELLPCLGAADRHIRSTV-GTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (683)
Q Consensus 85 ~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~-~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 163 (683)
..+++..+.+.. ++.. -.+..+--.+ ..+++.+... -+.+.+.+.....|++.-.|..|+.+.....+..
T Consensus 76 ~~~~~~~~~~~~-~l~~--~~~Wd~vD~~~~~i~g~~~~~-----~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~- 146 (208)
T cd07064 76 FLTPEDLPLLEE-LITT--KSWWDTVDSLAKVVGGILLAD-----YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT- 146 (208)
T ss_pred cCCHHHHHHHHH-HHcC--CchHHHHHHHHHHHhHHHHhC-----ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc-
Confidence 355555444433 2222 1344444333 3344444432 2445678888999999888888876544433321
Q ss_pred hccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH
Q 005686 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (683)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 219 (683)
....+...+...+.|++.-|+++.-..|..+....|+.+..++
T Consensus 147 -------------~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 147 -------------DTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred -------------CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 1345566667778888889999999999999877766655554
No 354
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=57.52 E-value=1.7e+02 Score=27.74 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHHHhccchhhHHhHH--HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhh---------CccchhhhHH
Q 005686 193 HTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV---------RPSFLEPHLR 261 (683)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~~~l~ 261 (683)
-+.+|..++..++.++.....+...++- +++|..+..+..+++-.+.-+.-.+..+... .++.+. ++.
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~-av~ 187 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFF-AVA 187 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHH-HHH
Confidence 4689999999999999866555554442 5677777766655554444444444444322 122222 233
Q ss_pred HHHHHHH-HhhcCCChHHHHHHhhHHHHhhccCCchh
Q 005686 262 NLFEYML-QVNKDTDDDVALEACEFWHSYFEAQLPHE 297 (683)
Q Consensus 262 ~l~~~~~-~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 297 (683)
.++..++ ...+++++.+-...+.+...+++++....
T Consensus 188 ~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~ 224 (262)
T PF04078_consen 188 MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRARE 224 (262)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHH
Confidence 3333333 33455666666777787777877643333
No 355
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.24 E-value=3.7e+02 Score=31.36 Aligned_cols=92 Identities=14% Similarity=0.292 Sum_probs=61.9
Q ss_pred hHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 218 SMDQYLQGLFL-----LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 218 ~~~~~l~~l~~-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
.+..++..++. ...|-++++|.-+++.|+..+..+|..+-. ...+.++-=.+.|...+||..++..+..+.+.
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 34445555554 356788999999999999999999987643 23334443357888899999999999998776
Q ss_pred CCchhhHHhhhhhhHHHHH
Q 005686 293 QLPHENLKEFLPRLVPVLL 311 (683)
Q Consensus 293 ~~~~~~~~~~l~~l~~~l~ 311 (683)
......+..+..+.-..++
T Consensus 357 ~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 357 DEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 3333444444444433333
No 356
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=56.85 E-value=48 Score=30.28 Aligned_cols=82 Identities=27% Similarity=0.361 Sum_probs=53.4
Q ss_pred HHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHH
Q 005686 375 LDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSIS 453 (683)
Q Consensus 375 l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 453 (683)
++.++..+.. ...+.+++.+....++.+ -|..|.+....+...-+ .++...+++.+-..+.|.+..|+.+.
T Consensus 103 vD~la~~~V~~~~~~~li~~~~a~~~~~~--~w~rraaiv~~l~~~k~------~~~~~~if~i~E~~l~d~e~fV~KAi 174 (222)
T COG4912 103 VDTLANHFVGIPLWPDLIEEWAADAEEDN--RWERRAAIVHQLVYKKK------TLDLLEIFEIIELLLGDKEFFVQKAI 174 (222)
T ss_pred HHHHHHHhhccccCHHHHHHHHhccccch--HHHHHHHHHHHHHHhcC------ccchhHHHHHHHHHccChHHHHHHHH
Confidence 4555555544 555666666633333322 26666665555543322 23344688888889999999999999
Q ss_pred HHHHHHHHHHH
Q 005686 454 CWTLSRFSKFI 464 (683)
Q Consensus 454 ~~~l~~l~~~~ 464 (683)
-|+|.+++++.
T Consensus 175 gWaLrq~~k~~ 185 (222)
T COG4912 175 GWALRQIGKHS 185 (222)
T ss_pred HHHHHHHHhhc
Confidence 99999999854
No 357
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=56.27 E-value=1.3e+02 Score=25.68 Aligned_cols=76 Identities=8% Similarity=0.174 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHcc-CCCCChhhHHHHHHHHHHHHhcchhhhhhhHH--HHHHH-HhhccC---CCChhHHHHHHHHHHHH
Q 005686 388 PTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAF-LIPLLD---DKFPLIRSISCWTLSRF 460 (683)
Q Consensus 388 ~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~l~~~-l~~~l~---d~~~~vr~~a~~~l~~l 460 (683)
...+..+.+.+.+ .+ ..+..-|+..+..+++.|+..+...+. ..+.. +...+. +.+..|+..++..+..+
T Consensus 37 k~a~ralkkRl~~~~n---~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 37 KDAVRALKKRLNGNKN---HKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHHHHHHHHHHccCCC---HHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHH
Confidence 3677777777764 45 777777899999999999765543221 23333 444443 34568999999999999
Q ss_pred HHHHHh
Q 005686 461 SKFIVQ 466 (683)
Q Consensus 461 ~~~~~~ 466 (683)
+..+++
T Consensus 114 ~~~f~~ 119 (141)
T cd03565 114 ADAFRG 119 (141)
T ss_pred HHHhCC
Confidence 988764
No 358
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=55.99 E-value=3e+02 Score=29.90 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=86.1
Q ss_pred hHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc-cchhhHHhHHH-HHHHHHhh-hCCCC-HHHHHHHHHHHHHHH----
Q 005686 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQ-YLQGLFLL-SNDPS-AEVRKLVCAAFNLLI---- 249 (683)
Q Consensus 178 ~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~-~l~~l~~~-~~~~~-~~~~~~~~~~l~~l~---- 249 (683)
...++..+...-..++..+|..|+-|+..++.. .+..+.+-+.. ++..+.+. ....+ ...-.-.-.++.++.
T Consensus 280 lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~ 359 (661)
T KOG2256|consen 280 LKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDL 359 (661)
T ss_pred HHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCH
Confidence 444555555555667889999999999877643 33333333322 22222221 11111 111111112223332
Q ss_pred hhCccchhhhHHHHHHHHHHhhcCCChH-H-------HHHHhhHHHHhhc-cCCchhhHHhhhhhhHHHHHhhcccChhh
Q 005686 250 EVRPSFLEPHLRNLFEYMLQVNKDTDDD-V-------ALEACEFWHSYFE-AQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (683)
Q Consensus 250 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~-v-------r~~a~~~l~~l~~-~~~~~~~~~~~l~~l~~~l~~~l~~~~~d 320 (683)
+.++..---|+.++.-.+-.++.....+ + -..++.+|..+.. .......++|.+..++.+++......+.
T Consensus 360 ~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT- 438 (661)
T KOG2256|consen 360 QVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPT- 438 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCc-
Confidence 2223222235555544444444333211 1 2567888888655 3233444555555555555433222110
Q ss_pred hhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHc
Q 005686 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS 399 (683)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 399 (683)
...+..|--+.+.|..|+...|-.+ ++.|.+.+.+.
T Consensus 439 -----------------------------------------~qy~PLRlhcir~Li~Ls~ssg~fI--Pi~~ll~Eml~ 474 (661)
T KOG2256|consen 439 -----------------------------------------PQYYPLRLHCIRSLISLSRSSGTFI--PLSPLLVEMLK 474 (661)
T ss_pred -----------------------------------------ccchhHHHHHHHHHHHHHhhcCcee--ecHHHHHHHHH
Confidence 0123478888899999988888622 33444444443
No 359
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=55.60 E-value=1.6e+02 Score=26.76 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
...-..++.++..+.+..+..-.+++..++..+-+...+.+...|..+=.++++..+.
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~a 71 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRA 71 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHH
Confidence 3444566677777766666555677777777777777766666777777777776654
No 360
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=55.38 E-value=2.5e+02 Score=28.89 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=74.0
Q ss_pred HHHHHHHHHhccCChh--HHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC-CHHHHHHHHHHHHHH
Q 005686 131 ELLQALVTCLDSNDIN--HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQF 207 (683)
Q Consensus 131 ~l~~~l~~~l~s~~~~--~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~vr~~a~~~l~~~ 207 (683)
+.+..++.++.+++.. +|..+..+|..+...-... +....-+..++...+.. -++........+..+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d----------~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRD----------RVARIGLGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhh----------HHhhccchhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3466777778777654 5888888887765432211 11122233444444432 345666666777776
Q ss_pred HhccchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhh-hH-HHHHHHHHHhhcCCChHHHHHHhh
Q 005686 208 IMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP-HL-RNLFEYMLQVNKDTDDDVALEACE 284 (683)
Q Consensus 208 ~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l-~~l~~~~~~~~~~~~~~vr~~a~~ 284 (683)
+....+.....+. ..+..++--..-.++.+...+.-+|..++-........ .+ +.+-++++-...+.|+-.|..|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 6543221111111 11222222222234555444444555444332222211 11 233444444444557777888887
Q ss_pred HHHHhhcc
Q 005686 285 FWHSYFEA 292 (683)
Q Consensus 285 ~l~~l~~~ 292 (683)
....++..
T Consensus 330 AV~vlat~ 337 (832)
T KOG3678|consen 330 AVAVLATN 337 (832)
T ss_pred HHhhhhhh
Confidence 76666655
No 361
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=54.45 E-value=3.6e+02 Score=30.41 Aligned_cols=283 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc
Q 005686 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 174 ~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (683)
++++...+...+..-+.+....--..|++++..++..+.+.+......++..+..++.+.+.+.+..++.++..++....
T Consensus 50 L~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~ 129 (819)
T KOG1877|consen 50 LPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEE 129 (819)
T ss_pred hhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcc
Q ss_pred cc------hhhhHHHHHHHHHHhhcCCC--hHHHHHHhhHHHHhhcc----CCchhhHHhh-hhhhHHHHHhhcccChhh
Q 005686 254 SF------LEPHLRNLFEYMLQVNKDTD--DDVALEACEFWHSYFEA----QLPHENLKEF-LPRLVPVLLSNMIYADDD 320 (683)
Q Consensus 254 ~~------~~~~l~~l~~~~~~~~~~~~--~~vr~~a~~~l~~l~~~----~~~~~~~~~~-l~~l~~~l~~~l~~~~~d 320 (683)
+- ...++..+.+++.+. .+.+ ..+|...+..+..+... ......-.+. .+.++|.+...++..+.
T Consensus 130 d~~sy~~~yd~Fi~kf~~l~he~-~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~- 207 (819)
T KOG1877|consen 130 DGPSYHRNYDFFISKFSSLCHER-GDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIEN- 207 (819)
T ss_pred cCchhhhhhHHHHHHHHHHhhcc-cchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhh-
Q ss_pred hhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHc
Q 005686 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLS 399 (683)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~ 399 (683)
.+....+.+ ......+...+..-.+..-+..|+..+...... ..+..++.-+...+.
T Consensus 208 -~~~~~S~s~---------------------~~~~~~~~a~~~~~~p~vla~~cl~~l~~~A~~g~~iR~~l~pl~~~~d 265 (819)
T KOG1877|consen 208 -LGKRESDSR---------------------IRTFSLLAAGDKTSDPKVLAERCLRELLGRAKFGTNIRNALKPLLSHLD 265 (819)
T ss_pred -cccccCccc---------------------ccCccccccCCcccCcchhHHHHHHHhhccccccchHHHHHHHHHhccc
Q ss_pred cCCCCChhhH-HHHHHHHHHHHhcc-hhhhhhhHHHHHHHHhhcc-CCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhh
Q 005686 400 ASGDEAWKDR-EAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (683)
Q Consensus 400 ~~~~~~~~~r-~aal~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 476 (683)
...- |..- .-|+.++..+.... ++....++..++..+.+.. ....++.+...+.+-+..+.... ..++
T Consensus 266 ~h~~--w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~~~~~~~~r~~~~iv~~~~~~i~~~~-------v~ps 336 (819)
T KOG1877|consen 266 FHEL--WTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDNKKLVAKKPRLGLSIVLVSIALIAATS-------VGPS 336 (819)
T ss_pred ccee--ecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHhhcccccCccccchhHHHHHHHHHhcc-------cchH
Q ss_pred HHHHHHHHHHHhc
Q 005686 477 FEKVLMGLLKRIL 489 (683)
Q Consensus 477 ~~~~l~~l~~~l~ 489 (683)
...++..++..|+
T Consensus 337 ~l~i~n~l~rhLR 349 (819)
T KOG1877|consen 337 VLIIFNDLLRHLR 349 (819)
T ss_pred HHHHHHHHHHHHH
No 362
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=53.82 E-value=89 Score=25.61 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=55.4
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchh
Q 005686 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (683)
Q Consensus 99 l~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 178 (683)
++.|..+...|+....-++...-. -++++..+.+.+....+..|...+.++..++.......... ..
T Consensus 6 L~~L~~s~~~I~~lt~~~~~~~~~------a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~-------f~ 72 (121)
T smart00582 6 LESLNNSQESIQTLTKWAIEHASH------AKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSE-------FG 72 (121)
T ss_pred HHhccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHH-------HH
Confidence 344444445555444444433221 24566667777766666788888888888888765432111 12
Q ss_pred HhhHHHHHHhh----cCCCHHHHHHHHHHHHHHHh
Q 005686 179 NIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 179 ~~i~~~l~~~l----~~~~~~vr~~a~~~l~~~~~ 209 (683)
..+.|.+...+ ...++.+|....+.+.-+-+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 73 DELGPVFQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 23333333222 23346788888888887765
No 363
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=53.79 E-value=2e+02 Score=27.08 Aligned_cols=187 Identities=17% Similarity=0.144 Sum_probs=106.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH-hcCCChHHH-----------HHHHhhhc-----c--CCCHHHHHHHHHHH
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQY-SQFPDFNNY-----------LAFILARA-----E--GKSVEIRQAAGLLL 75 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~-~~~p~~~~~-----------l~~il~~~-----~--~~~~~~R~~a~~~l 75 (683)
+.+.+..-...+|. .|..|...|.+- +..|+.... |.++++-. . +....-|..-+..|
T Consensus 26 dk~~~~i~~l~~~p---~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~L 102 (293)
T KOG3036|consen 26 DKAYQLILSLVSPP---TREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALAL 102 (293)
T ss_pred cchhhHHHHhhCCc---hHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHH
Confidence 34556665555565 778888877664 334442221 22232211 1 33455788888888
Q ss_pred HHHHHHhhccCCHhHHHHHHHHHhhhhh-----cCChHHHHHHHHHHHHHHhhcCc-----CChHHHHHHHHHHhccCCh
Q 005686 76 KNNLRTAYKSMSPSNQQYIKSELLPCLG-----AADRHIRSTVGTIVSVVVQLGGI-----AGWLELLQALVTCLDSNDI 145 (683)
Q Consensus 76 ~~~i~~~w~~l~~~~~~~i~~~Ll~~l~-----~~~~~vr~~~~~~l~~i~~~~~~-----~~~~~l~~~l~~~l~s~~~ 145 (683)
-+.+..+-+.-..=.++.+--.+.+.|. .+....|-.+-.+|+.+++.+.. --|.+++|..++.+.+++.
T Consensus 103 lQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSe 182 (293)
T KOG3036|consen 103 LQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSE 182 (293)
T ss_pred HHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccH
Confidence 8888665322111111111122333332 24567899999999999998643 2467888999999999988
Q ss_pred hHHhHHHHHHHHHHhhchhc-----cccCCCCCCcchhHhhHHHH-HHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 146 NHMEGAMDALSKICEDIPQV-----LDSDVPGLAECPINIFLPRL-LQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~-----~~~~~~~~~~~~~~~i~~~l-~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
..+..|..++..+.-.-..- ..+.+ ..+..++..+ .+..+.+++.+-+-+++|...+..
T Consensus 183 lSKtvA~fIlqKIlldD~GL~YiCqt~eRF-----~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 183 LSKTVATFILQKILLDDVGLYYICQTAERF-----SAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHhHHHH-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 88888988888776432210 00000 1133333333 334455677777777777766643
No 364
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.47 E-value=4.7e+02 Score=31.44 Aligned_cols=227 Identities=16% Similarity=0.072 Sum_probs=127.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC-----hHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHhhccC
Q 005686 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQFPD-----FNNYLAFILARAE----GKSVEIRQAAGLLLKNNLRTAYKSM 86 (683)
Q Consensus 16 ~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~-----~~~~l~~il~~~~----~~~~~~R~~a~~~l~~~i~~~w~~l 86 (683)
.+.-.+.-..++.-+ +|....+.+-.+-+.++ -|+..++.+.+-. +....+-+.+-..||-...+.-..+
T Consensus 843 l~sl~v~~~s~~~~e-vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSL 921 (1610)
T KOG1848|consen 843 LPSLEVSDNSSRGVE-VRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSL 921 (1610)
T ss_pred HHHHHHHHhcCccce-eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcC
Confidence 333444444556667 77777777777544332 1667777665321 1233344456666766666666778
Q ss_pred CHhHHHHHHHHHhhhhhc-CChHHHHHHHHHHHHH---Hhh--------------------c-------CcCChHHHHHH
Q 005686 87 SPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVV---VQL--------------------G-------GIAGWLELLQA 135 (683)
Q Consensus 87 ~~~~~~~i~~~Ll~~l~~-~~~~vr~~~~~~l~~i---~~~--------------------~-------~~~~~~~l~~~ 135 (683)
+......+.+.+...-.+ .+.+|.-.+...+=.+ .+. . +..-|--++..
T Consensus 922 p~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~ 1001 (1610)
T KOG1848|consen 922 PTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVH 1001 (1610)
T ss_pred ChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHH
Confidence 888888888777765543 3444432222221111 110 0 12346667788
Q ss_pred HHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC---------CCHHHH----HHHHH
Q 005686 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS---------PHTSLR----KLSLG 202 (683)
Q Consensus 136 l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~---------~~~~vr----~~a~~ 202 (683)
+.++..++.+.+|.+|.+.+-+++...+..+.+.. .-.-++..++..|.. ...+++ ...+.
T Consensus 1002 L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~a------W~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~l 1075 (1610)
T KOG1848|consen 1002 LADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNA------WASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCL 1075 (1610)
T ss_pred HHHHhccchHHHhhhHHHHHHHHHhhhcccCChhH------HHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhh
Confidence 88888889999999999999999988776655321 123344455555542 112221 23334
Q ss_pred HHHHHHhccchhhH---------HhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 005686 203 SVNQFIMLMPSALF---------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (683)
Q Consensus 203 ~l~~~~~~~~~~~~---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (683)
++..++...++.+. ...+.++..+..+..+.++++.-.++.++.++.
T Consensus 1076 tisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1076 TISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred hHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 44444443333222 223344555555666777788777777776654
No 365
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=52.02 E-value=97 Score=26.39 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCc
Q 005686 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ 557 (683)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 557 (683)
+.+...+...+.++++.||..|+.||..+=. ..+.||-+++ .+.+++. ..+ +.|..+...-+.....
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L----~~Lldd~---~fr---deL~~f~~~~~~~~I~ 82 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNL----ENLLDDK---TFR---DELTTFNLSDESSVIE 82 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHH----HHHcCcc---hHH---HHHHhhcccCCcCCCC
Confidence 4455556677788899999999999987522 3556665444 4444432 222 2233333222211112
Q ss_pred hhHHHhhhHHHHHH
Q 005686 558 PVYLDILMPPLIAK 571 (683)
Q Consensus 558 ~~~~~~~~~~l~~~ 571 (683)
+..-+.+||.++..
T Consensus 83 ~ehR~~l~pvvlRI 96 (141)
T PF07539_consen 83 EEHRPELMPVVLRI 96 (141)
T ss_pred HHHHhHHHHHHHHH
Confidence 35666777777765
No 366
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=51.68 E-value=2.7e+02 Score=28.12 Aligned_cols=267 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred CChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHH
Q 005686 143 NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY 222 (683)
Q Consensus 143 ~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 222 (683)
.+...++.|-..+....+.++ ......+..-+.++.|.+..||..|++-|-.++.. +.+....+.+
T Consensus 36 ~~~k~k~lasq~ip~~fk~fp------------~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l 101 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKHFP------------SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVL 101 (460)
T ss_pred cchHHHHHHHHHHHHHHhhCc------------hhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHH
Q ss_pred HHHHHhh--------hCCCCHHHHHHHHHHH-HHHHhhCccchhhhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 223 LQGLFLL--------SNDPSAEVRKLVCAAF-NLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 223 l~~l~~~--------~~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
.+.|.+. ....+..+|..++..+ ..++...++.+..-+. .|++.+.+.+.|...+--...+.+|.++-..
T Consensus 102 ~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~ 181 (460)
T KOG2213|consen 102 VQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSL 181 (460)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Q ss_pred CCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 005686 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (683)
Q Consensus 293 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~ 372 (683)
....-..-+.+++...-..-.. +-.+..|.+..+ ..-.++.
T Consensus 182 --~~k~~~a~lqeLa~~~e~~a~l-----------------------------------daf~~sD~d~Vd--RfisCl~ 222 (460)
T KOG2213|consen 182 --QTKAGEARLQELAEEQEGLADL-----------------------------------DAFNVSDADYVD--RFISCLL 222 (460)
T ss_pred --cCCCCHHHHHHHHHHHhhhhcc-----------------------------------CcccCCChHHHH--HHHHHHH
Q ss_pred HHHHHHHhhcCc-cchhhhHHHHHHH-HccCCCCChhhHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHhhccC--CCCh
Q 005686 373 AALDVLSNVFGD-EILPTLMPVIQAK-LSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLD--DKFP 447 (683)
Q Consensus 373 ~~l~~l~~~~~~-~~~~~l~~~l~~~-l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~--d~~~ 447 (683)
.++-.+++..++ ..+..+-..+... +.-.. -..+---+.+|+.++..+ .+...+.++.++..+...+. +.-+
T Consensus 223 ~AvPfFargapSskf~~y~n~~~ip~~fdkl~---e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~e 299 (460)
T KOG2213|consen 223 MAVPFFARGAPSSKFVEYLNKHIIPHHFDKLT---EERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGE 299 (460)
T ss_pred HhhhhhhcCCchhHHHHHHHhhhcccccccch---HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccH
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 005686 448 LIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~ 465 (683)
.....-+.|+-....++.
T Consensus 300 e~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 300 EMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHHHHHh
No 367
>PF14961 BROMI: Broad-minded protein
Probab=50.86 E-value=2.1e+02 Score=33.63 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=55.4
Q ss_pred HHHhhhhh-cCChHHHHHHHHHHHHHHhhc--CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc
Q 005686 96 SELLPCLG-AADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (683)
Q Consensus 96 ~~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~--~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~ 166 (683)
+.+++-+. +....||..+.+.|..+--.+ ....|+.+...|...+.++|+.....+++.........+..+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 44555554 356789999888887765443 567999999999999999999999999998888877665543
No 368
>PF14961 BROMI: Broad-minded protein
Probab=50.72 E-value=4.9e+02 Score=30.84 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=76.1
Q ss_pred HHHHHHHHHhccCCh-hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 131 ELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 131 ~l~~~l~~~l~s~~~-~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
+=++.+.+-++...| .+|..|++.| |...+..+... ...+.+-..+..+|.|+++.+...+++.....+.
T Consensus 161 e~lq~i~d~ld~~~P~evR~eAlq~L---c~~p~SDVls~------E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fs 231 (1296)
T PF14961_consen 161 EQLQLIADKLDPGQPKEVRLEALQIL---CSAPPSDVLSC------ESWSVLRENLTDALSDPDPEISDASLRFHAKMFS 231 (1296)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHH---hcCChhhcccc------ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 334555555554444 6888887777 44333322211 2346667778889999999999999999999988
Q ss_pred ccchhhHH-hHHHHHHHH---Hh-----------hhC--CCCHHHHHHHHHHHHHHHhhCcc----chhhhHHHHHHHHH
Q 005686 210 LMPSALFV-SMDQYLQGL---FL-----------LSN--DPSAEVRKLVCAAFNLLIEVRPS----FLEPHLRNLFEYML 268 (683)
Q Consensus 210 ~~~~~~~~-~~~~~l~~l---~~-----------~~~--~~~~~~~~~~~~~l~~l~~~~~~----~~~~~l~~l~~~~~ 268 (683)
..|-.+.. ....+++.+ +. .++ +++....-..+..++.+-...++ +-++|++++++-.+
T Consensus 232 sSpl~~trEiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTL 311 (1296)
T PF14961_consen 232 SSPLNMTREIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTL 311 (1296)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHH
Confidence 76644322 112222222 21 011 11112222344555555554443 44578888888777
Q ss_pred Hhhc
Q 005686 269 QVNK 272 (683)
Q Consensus 269 ~~~~ 272 (683)
..+.
T Consensus 312 sLLs 315 (1296)
T PF14961_consen 312 SLLS 315 (1296)
T ss_pred HHhc
Confidence 6653
No 369
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=50.30 E-value=1.6e+02 Score=24.92 Aligned_cols=58 Identities=12% Similarity=0.281 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
.....+++..+....+..|+.+..+-..+++++..++.+.++.++..|-+......+.
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~ 124 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQL 124 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCS
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 3445566777776777888888777778888888888877877888888877776655
No 370
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=50.29 E-value=1.8e+02 Score=30.71 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
..++..+...+.+.|...|.....+++.++-.+.+...- +.....=+..++.+.+|+...|+...++.+..+..
T Consensus 472 ~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf------~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 472 KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF------KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh------hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 557888888888888888888999999988877654210 11223345678899999999999999999998875
Q ss_pred c
Q 005686 210 L 210 (683)
Q Consensus 210 ~ 210 (683)
.
T Consensus 546 ~ 546 (743)
T COG5369 546 D 546 (743)
T ss_pred c
Confidence 3
No 371
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=50.08 E-value=35 Score=22.43 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc
Q 005686 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (683)
Q Consensus 90 ~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~ 124 (683)
..+++|+.+++.|...+.. |..+..+++++.+..
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4578999999999876655 888888888887654
No 372
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=50.03 E-value=68 Score=23.62 Aligned_cols=53 Identities=6% Similarity=0.203 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCcchhhHH--HHHHHHHHHhcc-CCccHHHHHHHHHHHHHHH
Q 005686 450 RSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILD-TNKRVQEAACSAFATLEEE 509 (683)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~l~~~l~d-~~~~v~~~a~~al~~l~~~ 509 (683)
.++|+|++|.++..-. ..++++ .+++.+++.... +...+|-.|..+|+-+...
T Consensus 4 lKaaLWaighIgss~~-------G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-------GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChH-------HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4679999999987533 234444 588888887764 5678999999999977643
No 373
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=49.37 E-value=2.4e+02 Score=26.80 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=26.1
Q ss_pred HHHhhhCCC--CHHHHHHHHHHHHHHHhhCcc---chhhhHHHHHH
Q 005686 225 GLFLLSNDP--SAEVRKLVCAAFNLLIEVRPS---FLEPHLRNLFE 265 (683)
Q Consensus 225 ~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~---~~~~~l~~l~~ 265 (683)
.+...+.++ +.-+|..++++|..++...+. .+..|+..++.
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~ 160 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLN 160 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344444554 456899999999999887654 33444555544
No 374
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=45.78 E-value=1.3e+02 Score=27.11 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=63.1
Q ss_pred CCCHHhHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 005686 8 QPQEQGFNEICRLLEQQISPSS---TADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (683)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~~~---~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~ 84 (683)
.|+++..++|..++.. +|-. ++.|..--+.=..+.+.|.+.+.++.-+. -.++....-+..++ ..|.
T Consensus 4 ~p~~~~~~~L~~i~~~--~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~---w~~~~~~~~~~~ll-----~~W~ 73 (184)
T PF00613_consen 4 KPNEEERDQLEAIINK--DPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVD---WWNPEEVSEAYQLL-----LQWP 73 (184)
T ss_dssp ---HHHHHHHHHHHTS---TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTST---TTSHHHHHHHHHHH-----HTSH
T ss_pred CcCHHHHHHHHHHHhc--CCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCC---CCchhhHHHHHHHH-----HcCC
Confidence 4777777888887754 2322 21232222222223468888876665332 33444333344343 4599
Q ss_pred cCCHhHHHHHHHHHhhhhhc--CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccC
Q 005686 85 SMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN 143 (683)
Q Consensus 85 ~l~~~~~~~i~~~Ll~~l~~--~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~ 143 (683)
.++++. .+.+|.. +++.||..|...+..+ +.+....++|.|.+.++-+
T Consensus 74 ~~~p~~-------AL~LL~~~f~~~~VR~yAv~~L~~~----~d~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 74 PISPED-------ALELLSPNFPDPFVRQYAVRRLESL----SDEELLFYLPQLVQALRYE 123 (184)
T ss_dssp CTTHHH-------HHHCTSTT---HHHHHHHHHHHCTS-----HHHHHHHHHHHHHHGGGS
T ss_pred CCCHHH-------HHHHHHhhccHHHHHHHHHHHHHHc----CchHHHHHHHHHHHHheec
Confidence 887743 3445543 3588999888877653 3345667788888888654
No 375
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=45.59 E-value=1.1e+02 Score=24.92 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=44.3
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHHhccch---hhHHhHHHHHHHHHhhhCCCC-HHHHHHHHHHHHHHHhhCccc
Q 005686 182 LPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPSF 255 (683)
Q Consensus 182 ~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~ 255 (683)
+.-++..|... +++-...|+++...++..-+. ++..+-.+++..++.+-+.-+ ++.-..-..++..++-..|..
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~ 84 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEK 84 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHH
Confidence 44566666643 577788999999999877655 666666677777776644221 223333455566677777877
Q ss_pred hhhhHH
Q 005686 256 LEPHLR 261 (683)
Q Consensus 256 ~~~~l~ 261 (683)
+.+|+-
T Consensus 85 ~~~~L~ 90 (114)
T PF10193_consen 85 VAPYLT 90 (114)
T ss_dssp HHH-HH
T ss_pred HHHHHH
Confidence 766553
No 376
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=42.80 E-value=71 Score=25.99 Aligned_cols=61 Identities=23% Similarity=0.215 Sum_probs=36.3
Q ss_pred CccHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHHHhhHhHHH-HHHHHHHHHHHHhc
Q 005686 492 NKRVQEAACSAFATLEEEAA---EELAPRLEIILQHLMMAFGKYQRRNLR-IVYDAIGTLADAVG 552 (683)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~---~~l~~~l~~i~~~L~~~l~~~~~~~~~-~~~~~l~~l~~~~~ 552 (683)
++.-.+.|......+++.-. ..+..|...++..|+.+=++++.+... .-..++..++...+
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P 82 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAP 82 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSG
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhh
Confidence 56777888999999987654 489999999999998877766543322 33445555555544
No 377
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=42.80 E-value=2.6e+02 Score=25.44 Aligned_cols=56 Identities=18% Similarity=0.005 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHh
Q 005686 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (683)
Q Consensus 411 aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (683)
-.+..++.+.+.++....+.+..++..+-+.-.+++...|..+-.++|...+.+++
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCH
Confidence 34455555555555555667777777777766677778899999999999988864
No 378
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=42.22 E-value=3.9e+02 Score=27.26 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=44.3
Q ss_pred hhHhhHHHHHHhhcCCCHHHHHHHHHHHH--HHHhccchhhHHhHHHHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCc
Q 005686 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVN--QFIMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 177 ~~~~i~~~l~~~l~~~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~ 253 (683)
...-++..+..++++++-.|...|+..+. .+...+.....-.++.+.+.|....+ .-+..+...++.++..+++..+
T Consensus 338 ~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~ 417 (457)
T KOG2085|consen 338 IMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDP 417 (457)
T ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 34455566667778888888888876653 22222222111122233444444322 2334556666777777777776
Q ss_pred cchhh
Q 005686 254 SFLEP 258 (683)
Q Consensus 254 ~~~~~ 258 (683)
..+..
T Consensus 418 ~LFee 422 (457)
T KOG2085|consen 418 KLFEE 422 (457)
T ss_pred HHHHH
Confidence 65543
No 379
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=41.28 E-value=5.2e+02 Score=28.36 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=52.6
Q ss_pred HHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHH
Q 005686 375 LDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (683)
Q Consensus 375 l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 454 (683)
+-.+++.+|.++ .+..+...+.=.+ +..|.+.=.|++-++-..++ -.++..+-+...|.+..|...|+
T Consensus 629 liAMgeeig~eM---~lR~f~h~l~yge---~~iRravPLal~llsvSNPq------~~vlDtLsk~shd~D~eva~naI 696 (878)
T KOG2005|consen 629 LIAMGEEIGSEM---VLRHFGHLLHYGE---PHIRRAVPLALGLLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAI 696 (878)
T ss_pred hhhhhhhhhhHH---HHHHHHHHHHcCC---HHHHHHHHHHHhhhccCCCc------chHHHHHHHhccCcchHHHHHHH
Confidence 334445555443 3444444454455 78999999999888765442 13677788888899999999999
Q ss_pred HHHHHHHHH
Q 005686 455 WTLSRFSKF 463 (683)
Q Consensus 455 ~~l~~l~~~ 463 (683)
.++|-+...
T Consensus 697 famGLiGAG 705 (878)
T KOG2005|consen 697 FAMGLIGAG 705 (878)
T ss_pred HHhccccCC
Confidence 988877643
No 380
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=40.96 E-value=6.6e+02 Score=29.47 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=42.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhcCCC---------hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHh
Q 005686 21 LEQQISPSSTADKSQIWQQLQQYSQFPD---------FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA 82 (683)
Q Consensus 21 l~~~~s~~~~~~r~~A~~~L~~~~~~p~---------~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~ 82 (683)
|-+++.+-+. -|.-+.+.|-.+..+|+ ...++..+++. ++.++.|-.||-+|.+...+.
T Consensus 1818 LL~lLHS~PS-~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~--~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1818 LLTLLHSQPS-MRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCL--TNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHhcChH-HHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhc--cCcHHHHHHHHHHHHHhhhcc
Confidence 3334455555 78888888877766554 34567777885 888999999999998887653
No 381
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=39.46 E-value=53 Score=24.13 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=27.4
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 005686 133 LQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (683)
Q Consensus 133 ~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 163 (683)
++.+..+..|..+.+|..|+.+|+.++....
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 7888899999999999999999999987543
No 382
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=38.89 E-value=3.6e+02 Score=25.80 Aligned_cols=120 Identities=19% Similarity=0.160 Sum_probs=68.9
Q ss_pred CccHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHh-hH---hHHH--HHHHHHHHHHHHhccccCchhHH
Q 005686 492 NKRVQEAACSAFATLEEEAA----EELAPRLEIILQHLMMAFGKY-QR---RNLR--IVYDAIGTLADAVGFELNQPVYL 561 (683)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~----~~l~~~l~~i~~~L~~~l~~~-~~---~~~~--~~~~~l~~l~~~~~~~~~~~~~~ 561 (683)
....-+.+..++..+|+.+. ..+.......++.++..+... .. ..++ ..=-++..+..+-...- + +.+
T Consensus 110 HrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~-~-~ll 187 (255)
T PF10350_consen 110 HRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNS-R-PLL 187 (255)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcc-h-hHH
Confidence 45677888888888888874 345555566677777777665 22 2344 23344555555433322 1 577
Q ss_pred HhhhHHHHHHHhcCCCC--Cc--ch--hhHHhHHHHHHHH--hccccccchHHHHHHHHH
Q 005686 562 DILMPPLIAKWQQLPNS--DK--DL--FPLLECFTSIAQA--LGAGFTQFAQPVFQRCIN 613 (683)
Q Consensus 562 ~~~~~~l~~~~~~~~~~--~~--~~--~~~~~~l~~l~~~--~g~~f~~~~~~~~~~l~~ 613 (683)
...|..|++..+..... +. +. .-++.++..|.+. ++....+|+.+.+...++
T Consensus 188 ~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~ 247 (255)
T PF10350_consen 188 HRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIK 247 (255)
T ss_pred HHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 88888777765543211 11 22 2367777777663 445566666665554433
No 383
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=37.85 E-value=4e+02 Score=26.13 Aligned_cols=185 Identities=13% Similarity=0.158 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccCCH-----hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC---ChHHHHH
Q 005686 63 KSVEIRQAAGLLLKNNLRTAYKSMSP-----SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---GWLELLQ 134 (683)
Q Consensus 63 ~~~~~R~~a~~~l~~~i~~~w~~l~~-----~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~l~~ 134 (683)
.+-+.|.-+++..-+.....-..-.+ .....+...++..... -+.+--.++..+....+...-. -+.+-+.
T Consensus 91 l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~ 169 (342)
T KOG1566|consen 91 LEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHEFLAKIILESTNFE 169 (342)
T ss_pred ccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhHHHHHHHHcchhHH
Confidence 34556666666655555443222111 1223344444444222 3556556666666666553111 1122234
Q ss_pred HHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHH-HHHhhcCCCHHHHHHHHHHHHHHHhccc-
Q 005686 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR-LLQFFQSPHTSLRKLSLGSVNQFIMLMP- 212 (683)
Q Consensus 135 ~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~~l~~~~~~vr~~a~~~l~~~~~~~~- 212 (683)
.....++.++-++-.-|...+..+.........+ .+.+.-..+++. -...+.+.+.-.|..+++.++.+...-|
T Consensus 170 ~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaE----fl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N 245 (342)
T KOG1566|consen 170 KFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAE----FLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSN 245 (342)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHH----HHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCc
Confidence 4445555555555555555555555443221110 001112334444 4456778899999999999999875433
Q ss_pred -hhhHHhHH--HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhC
Q 005686 213 -SALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (683)
Q Consensus 213 -~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 252 (683)
..+..++. .-+..+..++.|+..++.-.++..+..++.+.
T Consensus 246 ~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 246 SAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 22334443 45667777888888888889998888776653
No 384
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.78 E-value=8.5e+02 Score=29.89 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcccc
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (683)
+.++...++....++++..|-.|...+..+....++...+.++++++.|..++++.++.+-..+-..+..+-...|+.+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l 1617 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPL 1617 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhh
Confidence 6666666666667778899999999999999999999999999999999999998776655555566666666666543
No 385
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=37.54 E-value=3.6e+02 Score=25.45 Aligned_cols=100 Identities=9% Similarity=0.074 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHHhccchhhHHhH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc---------cchhhhH
Q 005686 192 PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP---------SFLEPHL 260 (683)
Q Consensus 192 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---------~~~~~~l 260 (683)
+.+.+|..++..++.++...+..+..++ .++++..+..+..+++..+.-+...+..++.... +.+ -++
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF-~av 215 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERF-SAV 215 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHH-HHH
Confidence 5678999999999999988776666554 2678888887776666555555555554443211 111 123
Q ss_pred HHHHHHHH-HhhcCCChHHHHHHhhHHHHhhcc
Q 005686 261 RNLFEYML-QVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 261 ~~l~~~~~-~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
..++.-++ +..+.++...-..++.+...++..
T Consensus 216 ~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 216 ALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 33443333 334455665666677777777665
No 386
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=37.35 E-value=3.3e+02 Score=25.01 Aligned_cols=145 Identities=10% Similarity=0.068 Sum_probs=82.3
Q ss_pred HHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhcc-CChhHHhH-HHHHHHHHHhhchhcccc
Q 005686 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEG-AMDALSKICEDIPQVLDS 168 (683)
Q Consensus 91 ~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s-~~~~~r~~-al~~l~~l~~~~~~~~~~ 168 (683)
.+.+...+..+..++....|..+...+....+...... ++.+...+.. +++..... +-.+++.+....
T Consensus 44 ~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~------ 113 (208)
T cd07064 44 KEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED----LPLLEELITTKSWWDTVDSLAKVVGGILLADY------ 113 (208)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhCC------
Confidence 33444444445556666677776666655443332222 4444444443 34444332 333333333211
Q ss_pred CCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 005686 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (683)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l 248 (683)
+...+.+.....+.+.-+|..|+-+...+.... ..+.+...+...++|++.-+++++.-.|..+
T Consensus 114 ----------~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~------~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~ 177 (208)
T cd07064 114 ----------PEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT------DTDLLFEIILANLGSKEFFIRKAIGWALREY 177 (208)
T ss_pred ----------hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc------CHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 233566778888999888888876544443321 1223344444556677777888888899999
Q ss_pred HhhCccchhhhHH
Q 005686 249 IEVRPSFLEPHLR 261 (683)
Q Consensus 249 ~~~~~~~~~~~l~ 261 (683)
....++.+..++.
T Consensus 178 ~k~d~~~V~~fl~ 190 (208)
T cd07064 178 SKTNPDWVRDFVA 190 (208)
T ss_pred hccCHHHHHHHHH
Confidence 9888887776664
No 387
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=37.33 E-value=2.9e+02 Score=24.33 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=67.9
Q ss_pred CCCCHHhHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc
Q 005686 7 WQPQEQGFNEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (683)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~-~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~ 85 (683)
-.|+++...+|..++..- ...=+++.|+---+.=..+.+.|.+.+.++.-.. =.++....-+..++ ..|..
T Consensus 4 ~~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~---W~~~~e~~e~~~lL-----~~W~~ 75 (166)
T cd00870 4 LKPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVN---WSDEQEVKQALELM-----PKWAK 75 (166)
T ss_pred CCcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCC---CCCHHHHHHHHHHH-----hcCCC
Confidence 367788777787777642 1111221333333322224467888765554321 23443333343333 46988
Q ss_pred CCHhHHHHHHHHHhhhhhc--CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCC
Q 005686 86 MSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND 144 (683)
Q Consensus 86 l~~~~~~~i~~~Ll~~l~~--~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~ 144 (683)
++++. .+++|.. .++.||..|..++..+ +...+..++++|.+.++-..
T Consensus 76 i~~~~-------aLeLL~~~f~~~~VR~yAV~~L~~~----sd~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 76 IDIED-------ALELLSPYFTNPVVRKYAVSRLKLA----SDEELLLYLLQLVQALKYEN 125 (166)
T ss_pred CCHHH-------HHHHcCccCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhcc
Confidence 77643 3444443 4789999988888863 34567778888888886443
No 388
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=37.22 E-value=2.2e+02 Score=22.94 Aligned_cols=46 Identities=4% Similarity=0.010 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHH
Q 005686 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI 520 (683)
Q Consensus 475 ~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~ 520 (683)
.+-..++..+.+.+....+.-+..++..+..++++++.....++..
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~ 78 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSE 78 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHH
Confidence 4456677777777777777888899999999999987665444433
No 389
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=36.56 E-value=63 Score=24.94 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
.-|.+++..|+.+...++. ...++++.++..|.....| ...++..+-.+|..+-+.-
T Consensus 4 ~~rH~~VLGL~Alv~a~Py-----~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPY-----DVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S-------SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCC-----CCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 4567788888888877654 4677888888888777775 5678888899999887654
No 390
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=36.48 E-value=5.9e+02 Score=27.68 Aligned_cols=218 Identities=11% Similarity=0.120 Sum_probs=112.7
Q ss_pred cCCHhHHHHHHHHHhhhhhcCCh--------HHH----HHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHH
Q 005686 85 SMSPSNQQYIKSELLPCLGAADR--------HIR----STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAM 152 (683)
Q Consensus 85 ~l~~~~~~~i~~~Ll~~l~~~~~--------~vr----~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al 152 (683)
.++++.-..|.+..+.-|...++ .+| ...|++||.+.+......-..++..|.+...+.+ ..+. -+
T Consensus 27 ~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~~~~~~~-~~~~-~~ 104 (552)
T PF14222_consen 27 SLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELEKLRKDSN-DAES-KI 104 (552)
T ss_pred CCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhcccCC-chHH-HH
Confidence 46677777777777776653222 233 4467888888876555555667777777765322 2221 11
Q ss_pred HHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhccc---------hhhHHhHHH
Q 005686 153 DALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMP---------SALFVSMDQ 221 (683)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~---------~~~~~~~~~ 221 (683)
..+-.-.+.+.-...+. +.+ ....+++..+.+++.+. +.+++.+-+..+..+..-+. +...+.+..
T Consensus 105 ~~li~GMr~lrlk~~p~--e~~-e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~ 181 (552)
T PF14222_consen 105 ELLIMGMRYLRLKMYPE--EAF-EESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVET 181 (552)
T ss_pred HHHHhhcceeeecCCCH--HHH-HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHH
Confidence 11111112211111110 000 12356677777776655 56799998888887753221 122233344
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHH-HhhCccchhhhHH-HHHHHHHHhhcCCChHHHHHHhhHH-----HHh-hccC
Q 005686 222 YLQGLFLLSNDPSAEVRKLVCAAFNLL-IEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFW-----HSY-FEAQ 293 (683)
Q Consensus 222 ~l~~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l-----~~l-~~~~ 293 (683)
+.+.+.+.... ++....++-....+ +-..++.+..++. .+++.+..-+++. ..|..+++++ ..+ -+..
T Consensus 182 i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~ 257 (552)
T PF14222_consen 182 IYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCP 257 (552)
T ss_pred HHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccC
Confidence 44444444443 22223344444433 3445567777777 6888777666765 5677776654 334 2222
Q ss_pred CchhhHHhhhhhhHHHHH
Q 005686 294 LPHENLKEFLPRLVPVLL 311 (683)
Q Consensus 294 ~~~~~~~~~l~~l~~~l~ 311 (683)
........-++.++..++
T Consensus 258 Es~n~T~krL~~i~~~lf 275 (552)
T PF14222_consen 258 ESLNNTTKRLDSIFKLLF 275 (552)
T ss_pred CCchHHHHHHHHHHHHHc
Confidence 222333344555555554
No 391
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.18 E-value=5.5e+02 Score=26.87 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 005686 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~ 208 (683)
.+++..+.+++....+..|...+..+-.+.-..+ +++ ......++|.+..++.+... ...|+..++.+.
T Consensus 344 ~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g--lr~------KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S 412 (791)
T KOG1222|consen 344 NGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG--LRP------KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLS 412 (791)
T ss_pred ccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc--ccH------HHhhccchHHHHHHhCCccc--chhhhhhhhhhc
Confidence 3456777777777777777777777755432221 111 12346788888888877532 234555565553
No 392
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=34.37 E-value=1.4e+02 Score=23.67 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcchhhhhhhHHH--HHHHHhhcc--CCCChhHHHHHHHHHHHHHHHHH
Q 005686 409 REAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLL--DDKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 409 r~aal~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
|...+..++.++...+. ....+.. -+|.++... .+.+|.+|..|.+++-.+++...
T Consensus 3 K~~lvrlianl~~~~~~-~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE-VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 45567777887766542 1222221 366666654 47799999999999999998654
No 393
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=34.30 E-value=6.4e+02 Score=27.43 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcchhhhhh--hHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHH
Q 005686 410 EAAVLALGAIAEGCIKGLYP--HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (683)
Q Consensus 410 ~aal~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (683)
...+..+....+..+.-+.+ -..+++..+....-+.++.||.+|..+|-+++...
T Consensus 446 ~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 446 KPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDK 502 (552)
T ss_pred cchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence 44445555555555443332 24668888888888999999999999999998754
No 394
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=33.80 E-value=6.6e+02 Score=27.44 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHhccCC--ccHHHHHHHHHHHHHHHhc
Q 005686 475 EQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEAA 511 (683)
Q Consensus 475 ~~~~~~l~~l~~~l~d~~--~~v~~~a~~al~~l~~~~~ 511 (683)
.+.+.++..|.+.+.+++ +.+|.+|+.=|++++...+
T Consensus 342 ~~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk 380 (563)
T PF05327_consen 342 ELADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAK 380 (563)
T ss_dssp HHHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBT
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555543 4567777777777776653
No 395
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=33.40 E-value=7e+02 Score=27.60 Aligned_cols=145 Identities=14% Similarity=0.035 Sum_probs=77.4
Q ss_pred CCCCCHHhHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHH-hc-CCChHH-HHHHHhhhccCCCHHHHHH-HHHHHHHHH
Q 005686 6 AWQPQEQGFNEICRLLEQ--QISPSSTADKSQIWQQLQQY-SQ-FPDFNN-YLAFILARAEGKSVEIRQA-AGLLLKNNL 79 (683)
Q Consensus 6 ~~~~~~~~~~~l~~~l~~--~~s~~~~~~r~~A~~~L~~~-~~-~p~~~~-~l~~il~~~~~~~~~~R~~-a~~~l~~~i 79 (683)
|-+.+++-...|..+|-+ ..+|.-. +|..|...|.+. .. .|.++. .++.++ | -..-.|.. +.-.+++.+
T Consensus 376 S~s~~~~lqt~L~hll~~~alFDpel~-vRr~a~Aal~E~iGR~~s~a~g~~lIslI--N--~~sv~r~s~csg~~~r~~ 450 (993)
T COG5234 376 SKSAIEGLQTNLIHLLLQTALFDPELN-VRRAATAALFEVIGRHASIADGLSLISLI--N--YVSVTRISNCSGDLCRKV 450 (993)
T ss_pred ccccchhHHHHHHHHHHhhhhcCchhh-hhhHHHHHHHHHhccCCCcccchhhhhhc--c--ceecchhhhcchHHHHHh
Confidence 344455522234444443 5577777 999999999985 33 454442 333333 1 11122222 223344444
Q ss_pred HHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHH
Q 005686 80 RTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC 159 (683)
Q Consensus 80 ~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~ 159 (683)
...-+..+.+ +-.+..|+.-|..=++.++...+..+..+.+. +...|-++|.+..-+.++ ...+..++..+.
T Consensus 451 ~~~~k~~~Ce--dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~--~~~~p~yl~~Il~k~~sd----fi~~~~il~~~~ 522 (993)
T COG5234 451 AHFPKFRSCE--DVFQDILLTNLQHWDVKVKQLSAYSLRQLIKY--PKELPIYLPPILDKLSSD----FIFGYTILASII 522 (993)
T ss_pred cCccccchHH--HHHHHHHHhhhhccchhhhhhccccHHHHhcC--cccCchhhhHHhhhCchh----hhcchhhHHHHH
Confidence 3221222222 33444466655566788888999999999764 455666677666555432 233444566666
Q ss_pred hhch
Q 005686 160 EDIP 163 (683)
Q Consensus 160 ~~~~ 163 (683)
+.+.
T Consensus 523 k~F~ 526 (993)
T COG5234 523 KGFL 526 (993)
T ss_pred HHhc
Confidence 6553
No 396
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=33.39 E-value=1.2e+02 Score=26.54 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCcCCh-----HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc
Q 005686 114 GTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (683)
Q Consensus 114 ~~~l~~i~~~~~~~~~-----~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~ 166 (683)
+.++..+.....+..| ..++|.+..+++|........|+..+..+++.+...+
T Consensus 47 vD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I 104 (164)
T PF13925_consen 47 VDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVI 104 (164)
T ss_pred HHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655533223344 7899999999999999999999999999998777543
No 397
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.18 E-value=4.3e+02 Score=25.11 Aligned_cols=78 Identities=15% Similarity=0.269 Sum_probs=43.6
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHHhccch---hhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccch
Q 005686 182 LPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (683)
Q Consensus 182 ~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (683)
.+.+.+.+.++ +.-+|.+|++++..++...|. .+..++..+++.. +. .+++. .....+..+++.++..+
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~---l~-~~~~~--~~~~Lv~~~~dL~~~EL 186 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYF---LE-RNPSF--LWGSLVADICDLYPEEL 186 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---hc-cCchH--HHHHHHHHHHhcCHHHh
Confidence 44566777776 457999999999999876543 2333333333322 22 22222 11222345566666666
Q ss_pred hhhHHHHHH
Q 005686 257 EPHLRNLFE 265 (683)
Q Consensus 257 ~~~l~~l~~ 265 (683)
.+.+...+.
T Consensus 187 ~~~I~~~f~ 195 (249)
T PF06685_consen 187 LPEIRKAFE 195 (249)
T ss_pred HHHHHHHHH
Confidence 665555444
No 398
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.77 E-value=5.3e+02 Score=27.20 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=70.6
Q ss_pred HHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhh
Q 005686 397 KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (683)
Q Consensus 397 ~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 476 (683)
.+..++ |..-...|..+..--.+ -.+.+..|.+.+++.++.|...|+.+|..+.+.|+... ...-.
T Consensus 13 ~l~~pD---Wa~NleIcD~IN~~~~~--------~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~f---h~~Va 78 (470)
T KOG1087|consen 13 SLAEPD---WALNLEICDLINSTEGG--------PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSF---HLQVA 78 (470)
T ss_pred cccCcc---HHHHHHHHHHHhcCccC--------cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHH---HHHHH
Confidence 344566 87655544444322111 12567889999999999999999999999999887541 11222
Q ss_pred HHHHHHHHHHHhccC--CccHHHHHHHHHHHHHHHhcc
Q 005686 477 FEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAE 512 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~--~~~v~~~a~~al~~l~~~~~~ 512 (683)
-..+++.++++.... ...||..++..|...-+.++.
T Consensus 79 ~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 79 SKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 356777788777754 568999999999998887744
No 399
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.68 E-value=7.1e+02 Score=27.41 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch
Q 005686 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (683)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~ 424 (683)
++|++.--+++.++-..|+- .++..+.++..+.+ ..+...+++++|-++.+..
T Consensus 655 ~iRravPLal~llsvSNPq~---~vlDtLsk~shd~D---~eva~naIfamGLiGAGTn 707 (878)
T KOG2005|consen 655 HIRRAVPLALGLLSVSNPQV---NVLDTLSKFSHDGD---LEVAMNAIFAMGLIGAGTN 707 (878)
T ss_pred HHHHHHHHHHhhhccCCCcc---hHHHHHHHhccCcc---hHHHHHHHHHhccccCCcc
Confidence 57777777777776666653 46667777777777 8899999999998888764
No 400
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=32.03 E-value=1.3e+02 Score=23.88 Aligned_cols=56 Identities=14% Similarity=-0.013 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCcchhhHH--HHHHHHHHHh--ccCCccHHHHHHHHHHHHHHHhc
Q 005686 450 RSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRI--LDTNKRVQEAACSAFATLEEEAA 511 (683)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~l~~~l--~d~~~~v~~~a~~al~~l~~~~~ 511 (683)
|...+..|+.++-..+. .+..+. .-+|.++... ++.+|-+|+.|..|+..+++...
T Consensus 3 K~~lvrlianl~~~~~~------~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE------VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHH------HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 44455666666643221 122221 2356666553 45689999999999999998653
No 401
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=30.08 E-value=1.8e+02 Score=23.45 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHH-HHHHHhhccCCCChhHHHHHHHHHHHH
Q 005686 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRF 460 (683)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (683)
..+...+.+.+.... +..|-.+++.+..++..+......++.. +.+.+.......++.+|......+..+
T Consensus 36 ~~iv~~i~~~i~~~~---~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 36 KEIVEIIEKHIKKCP---PEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHhCC---cccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 356667777777666 7889999999999998875443333333 244444444556677776655555444
No 402
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=30.00 E-value=3.2e+02 Score=22.56 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH
Q 005686 372 AAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (683)
Q Consensus 372 ~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~ 431 (683)
...+..++...-+ .-+..++..+...+...+..+|+...-|+..+-.+....++.+...+
T Consensus 21 ~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~ 81 (125)
T PF01417_consen 21 GKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDEL 81 (125)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3455566665533 56678889898888333344599999999999988876655444433
No 403
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=29.54 E-value=7.5e+02 Score=27.55 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=53.4
Q ss_pred HHhHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHH-hcCCC--hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc
Q 005686 11 EQGFNEICRLLEQQI--SPSSTADKSQIWQQLQQY-SQFPD--FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (683)
Q Consensus 11 ~~~~~~l~~~l~~~~--s~~~~~~r~~A~~~L~~~-~~~p~--~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~ 85 (683)
......+.|.|.... +|+.. .|+.+...+..+ ...|+ -..++..+|.+ ...+.+|-.+...+|..+...|..
T Consensus 436 ~~~~~~~~q~L~~i~~~~p~~~-lR~~~~~ll~~iL~~~p~~~rf~~i~dlLe~--c~~~~~k~~~I~~lKd~i~~a~~~ 512 (633)
T PF08568_consen 436 SEVFMQFLQALLLISVYCPSPE-LRKIAFTLLTRILHLFPEETRFKFIRDLLEN--CPFESLKASAIGWLKDEILKALQS 512 (633)
T ss_pred HHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHCCcHhHHHHHHHHHhc--CCCHhHHHHHHHHHHHHHHHHhcc
Confidence 445566666665554 67888 999999999984 45554 34466777764 788999999999999999776654
Q ss_pred C
Q 005686 86 M 86 (683)
Q Consensus 86 l 86 (683)
-
T Consensus 513 ~ 513 (633)
T PF08568_consen 513 S 513 (633)
T ss_pred C
Confidence 3
No 404
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=29.01 E-value=1.7e+02 Score=26.16 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhh--HHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPH--LSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (683)
...-..++.|+..+...-.. +... .+..+..+..++.++++.+|..++..|+.+|
T Consensus 130 ~~~~~~~l~Clkal~n~~~G-~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYG-LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHH-HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHH-HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 56677888999888775421 1111 2346788888999999999999999988775
No 405
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=27.88 E-value=5.4e+02 Score=24.61 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHhcc--hhhhhhhHH-HHHHHHhhccCCC---ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHH
Q 005686 406 WKDREAAVLALGAIAEGC--IKGLYPHLS-EIVAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~--~~~~~~~~~-~l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (683)
...+..+++++..+.... ...+..+.. .++..+....... +..+|.+++.++-.++-...... ...+.-..
T Consensus 124 ~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~---~~~~~~~~ 200 (268)
T PF08324_consen 124 PANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNR---SDEEWQSE 200 (268)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCT---S-CCHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcC---CChHHHHH
Confidence 677888888888776653 223344555 5666555555543 78999999999999988776531 12333344
Q ss_pred HHHHHHHHhcc--CCccHHHHHHHHHHHHH
Q 005686 480 VLMGLLKRILD--TNKRVQEAACSAFATLE 507 (683)
Q Consensus 480 ~l~~l~~~l~d--~~~~v~~~a~~al~~l~ 507 (683)
++..+.+.+.. .++++.-+++-|+|+++
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 66666664332 46788889999999998
No 406
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=27.62 E-value=6.7e+02 Score=25.55 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC-CcchhhHHHHHHHHHHH--hc-cC--CccHHHHHHH
Q 005686 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH-QNGREQFEKVLMGLLKR--IL-DT--NKRVQEAACS 501 (683)
Q Consensus 428 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~l~~l~~~--l~-d~--~~~v~~~a~~ 501 (683)
..|+.++..++-+.+...++.......+++|.+.+++++.+-. ......+..++..++-- ++ +. .+.+..+.-+
T Consensus 64 ~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k 143 (373)
T PF14911_consen 64 LEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRK 143 (373)
T ss_pred HHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHH
Confidence 3566667777777776667788888899999999988764311 12334455555444321 11 21 2334444444
Q ss_pred HHHHHHHHhc---ccchHHHHHHHHH
Q 005686 502 AFATLEEEAA---EELAPRLEIILQH 524 (683)
Q Consensus 502 al~~l~~~~~---~~l~~~l~~i~~~ 524 (683)
.+-.+++..+ ..-.+|+...+..
T Consensus 144 ~lpl~lqGl~~~~~~~dayL~~~l~~ 169 (373)
T PF14911_consen 144 SLPLFLQGLGRLSQRQDAYLNQQLRN 169 (373)
T ss_pred HHHHHHHHHHhcccccChHHHHHHHH
Confidence 4555555442 2223455544433
No 407
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.34 E-value=6.5e+02 Score=24.96 Aligned_cols=201 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCC--hHHHHHHHHHHHHHH---
Q 005686 49 FNNYLAFILARAEG--KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAAD--RHIRSTVGTIVSVVV--- 121 (683)
Q Consensus 49 ~~~~l~~il~~~~~--~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~--~~vr~~~~~~l~~i~--- 121 (683)
.+..|+.++. +.+ +...+|.+|+-++|..+.++ ++.|..+.+.+++.-.+.. ....+ ++..+.
T Consensus 35 vi~~LL~~~L-~~~~~~~f~lR~AA~~c~kay~~~N-----~~~q~~~l~~~i~~~~~~~~~~~~~n----l~~~Ll~~~ 104 (312)
T PF04869_consen 35 VIDALLNLML-NENSVQPFDLRCAALYCFKAYFYNN-----EEGQTAFLSTLIPSYASGNSDDPIAN----LLTALLDYD 104 (312)
T ss_dssp HHHHHHHHHT--TT--S-HHHHHHHHHHHHHHHTT------HHHHHHHHHTTSSTT--SS--SSSS-----HHHHHT---
T ss_pred HHHHHHHHHh-ccccccchHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHhccCCCCcccchhhH----HHHHHHHhh
Q ss_pred ---hhcCcCChHHHHHHHHHHhccCChhHHhHHHHH-HHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc-CCCHHH
Q 005686 122 ---QLGGIAGWLELLQALVTCLDSNDINHMEGAMDA-LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSL 196 (683)
Q Consensus 122 ---~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~-l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~v 196 (683)
+.++-..| +--.++..+=.+++..|+.++.+ .+.-..+-... ..+..+...+...+. +.++.+
T Consensus 105 ~~~~~dpy~~w--fAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~v----------tliq~v~~lL~~~l~~~~d~ri 172 (312)
T PF04869_consen 105 SDLSLDPYRCW--FAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPV----------TLIQTVSELLIASLRRNSDPRI 172 (312)
T ss_dssp ---SS-HHHHH--HHHHHHHHHHTT-HHHHHHHTT--EE--STTS--E----------EHHHHHHHHTTT----T--HHH
T ss_pred ccccCCHHHHH--HHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcc----------cHHHHHHHHHHhhhhcCCchhH
Q ss_pred HHHHHHHHHHHHhccchhhHHhHH-----HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhh
Q 005686 197 RKLSLGSVNQFIMLMPSALFVSMD-----QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN 271 (683)
Q Consensus 197 r~~a~~~l~~~~~~~~~~~~~~~~-----~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~ 271 (683)
+..-+..|..|.-..|..+...+. +.+-.......+.+.-++-.+.-.|+...+...+.=.---..+.+++.+.+
T Consensus 173 ~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~~~R~~l~~ll~~ri 252 (312)
T PF04869_consen 173 QIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSPIPRATLHPLLTKRI 252 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCCC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHhc
No 408
>PF06812 ImpA-rel_N: ImpA-related N-terminal; InterPro: IPR010657 This entry represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=26.01 E-value=2.1e+02 Score=20.06 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCH
Q 005686 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (683)
Q Consensus 32 ~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~ 88 (683)
+++.|.+.|.+-.++=....++...+.. .....-=..+..++...+.+.|..+-|
T Consensus 5 v~~~~~~lL~~~sKDlrv~~~l~~a~~~--~~g~~gl~~gl~ll~~ll~~~W~~l~P 59 (62)
T PF06812_consen 5 VEELALELLSEQSKDLRVAVWLTEALLR--LEGLAGLAEGLELLADLLENYWDSLHP 59 (62)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHH--ccChhHHHHHHHHHHHHHHHCCcccCC
Confidence 6777777776666655556666665553 334343445667778888899988765
No 409
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=25.54 E-value=3.7e+02 Score=21.86 Aligned_cols=62 Identities=8% Similarity=0.135 Sum_probs=39.2
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhccc
Q 005686 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (683)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (683)
.+..|......++..+.+++... .+-..++..+.+.+....+.-+...+..+..++.+++..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~--------------~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~ 66 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHA--------------SHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRK 66 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhc
Confidence 44555555566666666665433 222456666666666555666778888898998888544
No 410
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=24.93 E-value=2e+02 Score=31.35 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCCh
Q 005686 369 KCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP 447 (683)
Q Consensus 369 ~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~ 447 (683)
..|..+++.+.+..|. .....+-|.+.+.+.+.. +-.-.-+-...+...+...+.+..|+..++..+..+-...-+
T Consensus 360 SLasK~mde~mkl~Gm~YLh~tLkPvi~kI~eekK---~cEiDP~Kv~~g~~lE~n~~nLr~y~~~lf~ait~S~~~CP~ 436 (800)
T KOG2059|consen 360 SLASKMMDEFMKLAGMHYLHVTLKPVIDKIFEEKK---PCEIDPSKVKVGDNLETNLENLRVYVGRLFEAITKSSTRCPT 436 (800)
T ss_pred chHHHHHHHHHHHhchHHHHHHhHHHHHHHHhhcC---CcccChhhhhhhhHHHhhHHHHHHHHHHHHHHHHhccccChH
Confidence 3477888888888887 344455677777776532 111111122222334444445666777777777666544333
Q ss_pred hHH
Q 005686 448 LIR 450 (683)
Q Consensus 448 ~vr 450 (683)
.+|
T Consensus 437 vm~ 439 (800)
T KOG2059|consen 437 VMC 439 (800)
T ss_pred HHH
Confidence 333
No 411
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=24.23 E-value=7e+02 Score=24.59 Aligned_cols=119 Identities=9% Similarity=0.222 Sum_probs=79.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcc----chhhHHhHHHHHHHH-HhhhCCCCHHHHHHHHHHHHHHHhh--Ccc
Q 005686 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLM----PSALFVSMDQYLQGL-FLLSNDPSAEVRKLVCAAFNLLIEV--RPS 254 (683)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~----~~~~~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~ 254 (683)
+..++...+.+.-++..-|+.++..++..- .+.+..+.+.+.+.. -.++.+.+--.+..+.+.++.+.-. ...
T Consensus 168 ~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~ 247 (342)
T KOG1566|consen 168 FEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSA 247 (342)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHH
Confidence 345666777788888888888888776432 233344444444443 3345566666788888999888754 346
Q ss_pred chhhhHH--HHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHH
Q 005686 255 FLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (683)
Q Consensus 255 ~~~~~l~--~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 300 (683)
.+..|+. .=+.+++..++++...++..|+.........+..++.+.
T Consensus 248 ~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~ 295 (342)
T KOG1566|consen 248 VMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVR 295 (342)
T ss_pred HHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHH
Confidence 6778886 667778888999999999999887655555543333333
No 412
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=24.18 E-value=7.1e+02 Score=24.69 Aligned_cols=119 Identities=14% Similarity=0.014 Sum_probs=65.7
Q ss_pred cCccchhhhHHHHHHHHccCCCCChhhHHHHHHH-HHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 005686 382 FGDEILPTLMPVIQAKLSASGDEAWKDREAAVLA-LGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (683)
Q Consensus 382 ~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~-l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (683)
.|+.-+..++..+.+.+.... +...+.-+.+ +..++...........-+++..+.+....++| +|......+-.+
T Consensus 58 ~~ekdle~vlnsi~sLi~~~~---~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~-aR~~Vy~~lv~l 133 (378)
T KOG2753|consen 58 IPEKDLECVLNSIVSLIKNAP---PEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTP-ARYQVYMSLVTL 133 (378)
T ss_pred CCcchHHHHHHHHHHHHHhCC---HHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCch-HHHHHHHHHHHH
Confidence 355446677777777776544 4443333332 23344433222222344567777777777777 898887777777
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHhccCCcc--HHHHHHHHHHHHHHHhc
Q 005686 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR--VQEAACSAFATLEEEAA 511 (683)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~--v~~~a~~al~~l~~~~~ 511 (683)
+..+. ...|+.+=+..+-..+++-+.. -+..-..++...+..+.
T Consensus 134 a~~~~-------~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k 179 (378)
T KOG2753|consen 134 AASCK-------LIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNK 179 (378)
T ss_pred Hhhcc-------eeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence 76553 2334444444444555544433 34455666666665554
No 413
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.21 E-value=1.1e+03 Score=26.54 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=71.7
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhh
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (683)
..+++.|...-.++-..|+..+++++..+...-|+. -..++..+.+.++|++..+...+-..|..+...+|..=.-
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq----E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ----ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH----HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 344555555667788899999999999988765542 2345777888889998888888888888888777754333
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHhhHHHHhh
Q 005686 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (683)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 290 (683)
.+..|-.+++. .+.+.....+|+-||.++.
T Consensus 379 vi~EIer~~FR--pn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 VIDEIERLAFR--PNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hHHHHHHHHcc--cCccccceeehhhhhhhhH
Confidence 34455554432 2223334567777777754
No 414
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=23.20 E-value=2.7e+02 Score=20.01 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=27.4
Q ss_pred HhhccCCHhHHHHHHHHHhhhhhcCChH-HHHHHHHHHH
Q 005686 81 TAYKSMSPSNQQYIKSELLPCLGAADRH-IRSTVGTIVS 118 (683)
Q Consensus 81 ~~w~~l~~~~~~~i~~~Ll~~l~~~~~~-vr~~~~~~l~ 118 (683)
..|..++++.|+.+...+...|..-... |+......+.
T Consensus 15 ~ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~ 53 (68)
T PF06628_consen 15 DLYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFY 53 (68)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHH
Confidence 3477788999999999998888765555 7765444443
No 415
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=22.51 E-value=4.8e+02 Score=22.10 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHH-----hh-hccCCCHHHHHHHHHHHHHHHHHhhccCCH
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFI-----LA-RAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~i-----l~-~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~ 88 (683)
+-|..++...+...+.+.+.|....|..|.-+|--|.+|.++ +. +-+++++....++.--|.|.. .++
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC------~d~ 89 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC------LDK 89 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc------cCh
Confidence 344555555555433337888888999988888877766543 22 113667777888877777654 334
Q ss_pred hHHHHHHHH-----HhhhhhcCChHHHHHHHHHHHHHH
Q 005686 89 SNQQYIKSE-----LLPCLGAADRHIRSTVGTIVSVVV 121 (683)
Q Consensus 89 ~~~~~i~~~-----Ll~~l~~~~~~vr~~~~~~l~~i~ 121 (683)
...+.|+.. ++..++++...+-..++..+-.+.
T Consensus 90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 455555543 223344555555555555555443
No 416
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=22.37 E-value=4.1e+02 Score=22.96 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC--CCHHHHHHHHHHHHHH
Q 005686 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQF 207 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~vr~~a~~~l~~~ 207 (683)
|..+|.+++++.-.++..+..+...+ ...... . .... +..|.. +++.||..|++++...
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL----~~W~~~-~----------~~~a----L~LL~~~~~~~~vr~yAv~~L~~~ 98 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLL----KWWAPL-S----------PEDA----LELLSPKYPDPVVRQYAVRVLESA 98 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHH----hcCCCC-C----------HHHH----HHHcCCcCCCHHHHHHHHHHHHhC
Confidence 45667777777655554444443333 332210 0 1222 334433 4589999999999774
Q ss_pred HhccchhhHHhHHHHHHHH
Q 005686 208 IMLMPSALFVSMDQYLQGL 226 (683)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l 226 (683)
- ++.+..+++++++.+
T Consensus 99 ~---~~~l~~ylpQLVQaL 114 (152)
T cd00864 99 S---DDELLLYLPQLVQAL 114 (152)
T ss_pred C---HHHHHHHHHHHHHHH
Confidence 2 233444555555544
No 417
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.18 E-value=2.9e+02 Score=24.63 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=38.3
Q ss_pred ChhHHhHHHHHHHHHHhhchh--ccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 005686 144 DINHMEGAMDALSKICEDIPQ--VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (683)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~ 208 (683)
+......++.|+..++..-.. .+.. .+..+..+...+.+++..+|..++..|..++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~---------~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLS---------HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHC---------SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHc---------CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 445666788888887764332 1111 2456788899999999999999999998765
No 418
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=22.14 E-value=5.3e+02 Score=22.48 Aligned_cols=120 Identities=14% Similarity=0.091 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC
Q 005686 112 TVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (683)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 191 (683)
....++..+++.. +..-+++++.+...+-+........-..+|+.++...+-.+.++ ..-+..+++.+..
T Consensus 37 LG~~IL~~~fk~h-~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~---------~~~l~~~ld~l~~ 106 (158)
T PF14676_consen 37 LGIQILLELFKVH-EMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLEC---------SSKLKELLDYLSF 106 (158)
T ss_dssp HHHHHHHHHHHH--GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S----------HHHHGGGGGTTT
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHH---------HHHHHHHHHHHHh
Confidence 3445555555543 22335566666555432222211234688888888887655432 1223334444544
Q ss_pred CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 005686 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (683)
Q Consensus 192 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l 245 (683)
=..++...-++++.-++..- ..+.+ .++-.+-+.+-..+.+.|..|...+
T Consensus 107 lp~~~a~~ll~Al~PLi~~s-~~lrd---~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 107 LPGDVAIGLLRALLPLIKFS-PSLRD---SLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHH---HHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcC-HHHHH---HHHHHHHHHHccccHHHHHHHHHHh
Confidence 45566666666666665442 22222 3356666666667778887776554
No 419
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=21.64 E-value=8.7e+02 Score=24.76 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhccC----ChhHHhHHHHHHHHHHhhchhccc
Q 005686 130 LELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQVLD 167 (683)
Q Consensus 130 ~~l~~~l~~~l~s~----~~~~r~~al~~l~~l~~~~~~~~~ 167 (683)
.+++..+.+++... +.......+.+++.+++.++..+.
T Consensus 64 ~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~lly 105 (373)
T PF14911_consen 64 LEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLY 105 (373)
T ss_pred HHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhhe
Confidence 34444444444433 556666677777777777776543
No 420
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=21.22 E-value=3.9e+02 Score=23.08 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=18.7
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
+.+..+...+. ++.||.-|+..|..+..
T Consensus 73 ~aL~LL~~~~~--~~~vr~yAv~~L~~~~~ 100 (152)
T cd00864 73 DALELLSPKYP--DPVVRQYAVRVLESASD 100 (152)
T ss_pred HHHHHcCCcCC--CHHHHHHHHHHHHhCCH
Confidence 34454444444 49999999888877643
No 421
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.90 E-value=1e+03 Score=25.43 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc
Q 005686 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (683)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~ 423 (683)
.+|+..--|++.++...|+. .++..+.+...+.+ ..+...+++++|-++.+.
T Consensus 656 hiR~~~PLa~gils~SnPQm---~vfDtL~r~shd~d---l~v~~ntIfamGLiGAGT 707 (881)
T COG5110 656 HIRSVLPLAYGILSPSNPQM---NVFDTLERSSHDGD---LNVIINTIFAMGLIGAGT 707 (881)
T ss_pred HHHHHHHHHHhcccCCCcch---HHHHHHHHhccccc---hhHHHHHHHHhhccccCc
Confidence 35665555555554444432 34555555555666 777777888887776665
No 422
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=20.66 E-value=1.4e+03 Score=26.71 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 005686 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 427 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (683)
+..+...+++.++..+.+++..|+...+-.+.++.+.
T Consensus 299 ~~~~~T~v~~~fL~a~DS~~~iV~yeVIlsi~~~i~k 335 (1697)
T KOG3687|consen 299 LRNSPTSVFPSFLQAMDSPNEVVSYEVILSITRLIKK 335 (1697)
T ss_pred ecccchhhHHHHHHHhcCccceEEEEEeehhhHHHHH
Confidence 3466677899999999988887777665555555443
No 423
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=20.41 E-value=1.2e+03 Score=25.97 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccccC--chhHHHhhhHHHHHHHhcCCCC--CcchhhHHhHHHHH
Q 005686 541 YDAIGTLADAVGFELN--QPVYLDILMPPLIAKWQQLPNS--DKDLFPLLECFTSI 592 (683)
Q Consensus 541 ~~~l~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~l 592 (683)
+++|-.++..+|..+. .|.-+..++..+...+.+.... .+++...++++..+
T Consensus 461 ve~ll~ii~~~G~~LRkDDp~alk~~i~eiq~~a~~a~~s~~~pR~rFmleti~aL 516 (822)
T KOG2141|consen 461 VEALLTIIANCGFSLRKDDPLALKDIITEIQSKAASAKISAISPRLRFMLETISAL 516 (822)
T ss_pred HHHHHHHHHHccchhcCCChHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHH
Confidence 3455556666665554 3556777776666555544322 23333455555544
No 424
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=20.15 E-value=5.1e+02 Score=23.28 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
|......-.+...+..-. .....+.+..+-..+. ++.||.-|+..|..+..
T Consensus 55 W~~~~e~~e~~~ll~~W~----~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~~~~d 105 (184)
T smart00145 55 WSDADEVAQALSLLKKWA----PLDPEDALELLSPKFP--DPFVRAYAVERLESASD 105 (184)
T ss_pred CCCHHHHHHHHHHHHcCC----CCCHHHHHHHhCccCC--CHHHHHHHHHHHHhCCH
Confidence 776665555544333321 1223344555555554 68999999988877653
Done!