Query 005686
Match_columns 683
No_of_seqs 243 out of 2446
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 04:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 5.5E-66 1.9E-70 587.8 62.6 638 5-678 3-646 (852)
2 2bpt_A Importin beta-1 subunit 100.0 1.2E-49 3.9E-54 456.7 56.3 586 15-669 4-647 (861)
3 1qgr_A Protein (importin beta 100.0 3.5E-48 1.2E-52 445.3 49.4 583 16-668 2-656 (876)
4 1wa5_C Importin alpha RE-expor 100.0 2.8E-48 9.6E-53 445.8 47.2 599 14-667 4-687 (960)
5 2x1g_F Cadmus; transport prote 100.0 2.4E-44 8.1E-49 415.5 41.7 595 14-669 6-742 (971)
6 2x19_B Importin-13; nuclear tr 100.0 1.5E-43 5.2E-48 409.3 47.0 594 12-667 21-732 (963)
7 3m1i_C Exportin-1; heat repeat 100.0 1.7E-43 6E-48 409.3 41.6 572 10-617 11-699 (1049)
8 4hat_C Exportin-1; heat repeat 100.0 1.1E-40 3.8E-45 375.7 42.8 572 13-619 14-701 (1023)
9 1ibr_B P95, importin beta-1 su 100.0 1.6E-40 5.6E-45 352.5 35.3 418 16-489 2-461 (462)
10 3ibv_A Exportin-T; karyopherin 100.0 1.3E-39 4.6E-44 367.1 37.7 595 14-667 5-748 (980)
11 3gjx_A Exportin-1; transport, 100.0 9.3E-38 3.2E-42 349.1 39.5 567 13-617 26-725 (1073)
12 1u6g_C TIP120 protein, CAND1; 100.0 5.8E-37 2E-41 362.6 44.2 600 15-675 6-664 (1230)
13 4fdd_A Transportin-1; heat rep 100.0 4.4E-35 1.5E-39 333.4 45.2 582 7-679 40-688 (852)
14 2bpt_A Importin beta-1 subunit 100.0 2.1E-32 7.3E-37 313.4 58.3 571 10-668 89-730 (861)
15 3a6p_A Exportin-5; exportin-5, 100.0 1.7E-32 5.9E-37 317.8 40.5 528 10-574 6-682 (1204)
16 1u6g_C TIP120 protein, CAND1; 100.0 8.7E-32 3E-36 318.4 38.3 539 62-669 17-618 (1230)
17 1b3u_A Protein (protein phosph 100.0 8.4E-32 2.9E-36 294.7 35.1 557 13-678 8-575 (588)
18 1b3u_A Protein (protein phosph 100.0 8.9E-31 3E-35 286.6 40.4 534 12-647 45-585 (588)
19 1qgr_A Protein (importin beta 100.0 4.2E-29 1.4E-33 286.7 53.4 585 15-678 171-859 (876)
20 1wa5_C Importin alpha RE-expor 99.9 2.6E-20 9E-25 213.8 45.7 596 8-667 31-767 (960)
21 1ibr_B P95, importin beta-1 su 99.9 4.1E-21 1.4E-25 203.2 36.1 395 62-530 12-461 (462)
22 2jdq_A Importin alpha-1 subuni 99.9 6.5E-19 2.2E-23 185.5 36.4 392 95-548 22-442 (450)
23 1wa5_B Importin alpha subunit; 99.8 1.6E-18 5.6E-23 185.9 32.0 356 95-511 89-460 (530)
24 2x1g_F Cadmus; transport prote 99.8 9.3E-17 3.2E-21 185.3 47.4 552 15-654 85-765 (971)
25 2jdq_A Importin alpha-1 subuni 99.8 3E-18 1E-22 180.3 31.1 397 50-507 22-442 (450)
26 2x19_B Importin-13; nuclear tr 99.8 1.3E-16 4.3E-21 184.4 47.3 532 16-617 104-737 (963)
27 2vgl_B AP-2 complex subunit be 99.8 3.8E-17 1.3E-21 176.7 37.7 434 14-547 15-455 (591)
28 2vgl_B AP-2 complex subunit be 99.8 4.5E-18 1.5E-22 183.9 29.1 438 19-547 53-530 (591)
29 1wa5_B Importin alpha subunit; 99.8 1.6E-17 5.6E-22 178.1 29.9 401 47-508 86-510 (530)
30 4b8j_A Importin subunit alpha- 99.8 1E-16 3.6E-21 172.0 35.8 352 96-511 77-446 (528)
31 4b8j_A Importin subunit alpha- 99.8 6.6E-17 2.3E-21 173.5 29.5 359 132-552 75-446 (528)
32 3m1i_C Exportin-1; heat repeat 99.8 1.2E-15 4E-20 176.8 37.9 569 15-669 51-805 (1049)
33 3now_A UNC-45 protein, SD10334 99.7 8.7E-15 3E-19 158.5 39.2 461 28-550 217-738 (810)
34 2z6g_A B-catenin; FULL-length, 99.7 7.5E-15 2.6E-19 163.5 38.1 510 51-655 118-669 (780)
35 1w63_A Adapter-related protein 99.7 5.3E-14 1.8E-18 152.5 41.8 525 23-669 42-595 (618)
36 3now_A UNC-45 protein, SD10334 99.7 4.6E-14 1.6E-18 152.9 39.5 431 46-550 288-783 (810)
37 2z6g_A B-catenin; FULL-length, 99.7 1E-14 3.4E-19 162.5 35.4 453 26-551 161-665 (780)
38 1w63_A Adapter-related protein 99.7 1.7E-14 5.7E-19 156.4 35.5 442 20-548 75-576 (618)
39 3ibv_A Exportin-T; karyopherin 99.7 1.8E-13 6.3E-18 154.7 43.4 276 364-666 456-785 (980)
40 2z6h_A Catenin beta-1, beta-ca 99.7 4E-14 1.4E-18 155.2 34.9 477 94-655 15-533 (644)
41 4hat_C Exportin-1; heat repeat 99.7 1.1E-12 3.6E-17 148.5 47.0 553 32-666 116-802 (1023)
42 2z6h_A Catenin beta-1, beta-ca 99.7 3.3E-14 1.1E-18 156.0 33.8 457 14-551 16-529 (644)
43 3ul1_B Importin subunit alpha- 99.7 1.3E-14 4.5E-19 153.9 28.8 359 133-552 59-433 (510)
44 1jdh_A Beta-catenin; beta-cate 99.7 3.1E-14 1.1E-18 153.0 31.1 451 26-547 28-528 (529)
45 3tpo_A Importin subunit alpha- 99.7 3.9E-14 1.3E-18 151.2 31.5 360 132-552 77-452 (529)
46 3ul1_B Importin subunit alpha- 99.7 8.4E-14 2.9E-18 147.7 30.9 385 17-507 59-477 (510)
47 2qk1_A Protein STU2; STU2P, XM 99.6 1.4E-15 4.6E-20 143.9 14.8 209 386-607 13-234 (249)
48 3tpo_A Importin subunit alpha- 99.6 6E-13 2.1E-17 142.0 34.8 385 16-507 77-496 (529)
49 1jdh_A Beta-catenin; beta-cate 99.6 1.8E-13 6.1E-18 147.1 30.0 383 92-536 16-413 (529)
50 2qk2_A LP04448P; mini spindles 99.6 7E-15 2.4E-19 139.8 16.6 215 385-616 11-228 (242)
51 2vgl_A Adaptor protein complex 99.6 2.6E-11 8.7E-16 130.9 46.4 479 51-647 77-587 (621)
52 2vgl_A Adaptor protein complex 99.6 4.9E-12 1.7E-16 136.4 38.9 437 19-547 78-587 (621)
53 2qk1_A Protein STU2; STU2P, XM 99.6 6.5E-14 2.2E-18 132.3 17.2 195 362-564 27-234 (249)
54 2qk2_A LP04448P; mini spindles 99.6 1.8E-13 6.1E-18 130.0 19.4 191 362-567 26-222 (242)
55 3gjx_A Exportin-1; transport, 99.5 2E-10 6.9E-15 129.3 46.1 288 363-666 491-828 (1073)
56 4hxt_A De novo protein OR329; 99.4 3.1E-11 1.1E-15 115.6 24.0 244 181-517 3-250 (252)
57 1oyz_A Hypothetical protein YI 99.4 4.8E-11 1.6E-15 116.2 20.6 252 133-504 25-278 (280)
58 1xm9_A Plakophilin 1; armadill 99.3 2.2E-10 7.6E-15 119.3 26.1 374 133-547 4-447 (457)
59 4hxt_A De novo protein OR329; 99.3 3.4E-10 1.2E-14 108.3 25.4 239 132-465 3-244 (252)
60 3l6x_A Catenin delta-1; cateni 99.3 1.5E-09 5E-14 113.8 31.5 363 126-549 42-476 (584)
61 4db8_A Armadillo-repeat protei 99.3 1.9E-10 6.5E-15 110.0 22.3 236 132-462 13-251 (252)
62 1oyz_A Hypothetical protein YI 99.3 1.6E-10 5.4E-15 112.5 22.0 225 180-506 23-248 (280)
63 4db8_A Armadillo-repeat protei 99.3 1E-10 3.5E-15 111.9 17.7 236 46-291 10-251 (252)
64 1xm9_A Plakophilin 1; armadill 99.2 3.2E-09 1.1E-13 110.6 26.4 378 96-507 5-448 (457)
65 3l6x_A Catenin delta-1; cateni 99.2 8.9E-09 3.1E-13 107.9 29.6 351 96-508 51-476 (584)
66 3opb_A SWI5-dependent HO expre 99.2 8.3E-07 2.8E-11 94.6 43.6 428 46-549 253-728 (778)
67 2iw3_A Elongation factor 3A; a 99.2 6.3E-09 2.1E-13 114.6 26.6 291 236-594 29-327 (986)
68 3ltm_A Alpha-REP4; protein eng 99.2 1.1E-09 3.8E-14 101.4 17.6 92 179-290 18-109 (211)
69 2db0_A 253AA long hypothetical 99.2 2.9E-08 1E-12 83.2 23.3 215 220-507 31-245 (253)
70 2iw3_A Elongation factor 3A; a 99.1 2.9E-08 1E-12 109.4 28.9 298 97-465 18-327 (986)
71 3nmz_A APC variant protein; pr 99.1 1.1E-07 3.7E-12 97.4 30.7 353 15-463 32-451 (458)
72 3ltj_A Alpharep-4; protein eng 99.1 4.6E-09 1.6E-13 96.3 18.7 183 221-506 14-196 (201)
73 3nmz_A APC variant protein; pr 99.1 2.4E-08 8.2E-13 102.2 25.1 310 145-510 96-452 (458)
74 3ltj_A Alpharep-4; protein eng 99.1 9.6E-09 3.3E-13 94.2 19.3 187 178-462 12-198 (201)
75 4db6_A Armadillo repeat protei 99.1 1.5E-08 5.2E-13 93.6 20.4 197 178-462 10-209 (210)
76 3ltm_A Alpha-REP4; protein eng 99.1 4.6E-09 1.6E-13 97.2 16.7 190 9-252 16-205 (211)
77 3opb_A SWI5-dependent HO expre 99.0 1.1E-05 3.9E-10 86.0 43.7 498 103-649 180-728 (778)
78 4db6_A Armadillo repeat protei 99.0 9.1E-09 3.1E-13 95.1 17.8 192 93-291 12-209 (210)
79 3a6p_A Exportin-5; exportin-5, 99.0 2.1E-06 7.1E-11 100.1 40.0 459 28-530 109-681 (1204)
80 2db0_A 253AA long hypothetical 98.9 9.7E-07 3.3E-11 74.2 23.5 220 40-289 24-244 (253)
81 1xqr_A HSPBP1 protein; armadil 98.9 5.8E-08 2E-12 93.5 16.6 187 96-289 84-285 (296)
82 4ady_A RPN2, 26S proteasome re 98.9 2.8E-06 9.7E-11 92.6 30.9 322 100-531 365-699 (963)
83 3tjz_B Coatomer subunit gamma; 98.8 2.1E-07 7E-12 91.0 19.0 318 90-503 23-348 (355)
84 1xqr_A HSPBP1 protein; armadil 98.8 2E-06 6.7E-11 82.9 24.9 155 130-292 27-197 (296)
85 3nmw_A APC variant protein; AR 98.7 3.7E-07 1.3E-11 90.5 18.1 262 195-512 47-338 (354)
86 3nmw_A APC variant protein; AR 98.7 2.7E-06 9.3E-11 84.3 23.7 263 146-464 47-336 (354)
87 2of3_A ZYG-9; multifunctional 98.7 6.6E-07 2.3E-11 83.1 17.5 179 231-465 56-239 (266)
88 3b2a_A TON_1937, putative unch 98.6 2.2E-05 7.5E-10 69.4 23.6 149 130-292 32-180 (265)
89 4ady_A RPN2, 26S proteasome re 98.6 2.7E-05 9.2E-10 85.0 29.2 302 62-461 406-718 (963)
90 3tjz_B Coatomer subunit gamma; 98.6 3.3E-06 1.1E-10 82.5 19.8 290 84-457 59-348 (355)
91 2of3_A ZYG-9; multifunctional 98.6 1.3E-05 4.4E-10 74.5 22.3 194 9-218 31-245 (266)
92 4ffb_C Protein STU2; tubulin f 98.5 3E-06 1E-10 81.7 15.7 181 362-555 20-218 (278)
93 3b2a_A TON_1937, putative unch 98.4 3.1E-05 1.1E-09 68.4 19.4 187 46-251 31-219 (265)
94 4ffb_C Protein STU2; tubulin f 98.4 5.9E-06 2E-10 79.6 15.3 187 99-292 15-213 (278)
95 1vsy_5 Proteasome activator BL 98.4 5.5E-06 1.9E-10 92.8 16.7 425 46-550 461-967 (997)
96 3oc3_A Helicase MOT1, MOT1; re 98.3 2.7E-05 9.3E-10 77.8 16.6 201 62-290 185-403 (800)
97 1te4_A Conserved protein MTH18 98.1 3.4E-07 1.2E-11 76.9 -0.1 120 387-545 10-129 (131)
98 1te4_A Conserved protein MTH18 98.0 6.5E-06 2.2E-10 68.9 6.1 87 391-505 44-130 (131)
99 3grl_A General vesicular trans 98.0 0.0054 1.8E-07 63.9 28.5 322 93-462 21-394 (651)
100 3grl_A General vesicular trans 98.0 0.0032 1.1E-07 65.6 26.8 155 127-292 17-196 (651)
101 3oc3_A Helicase MOT1, MOT1; re 97.9 0.00013 4.3E-09 73.1 13.5 188 29-246 242-432 (800)
102 3l9t_A Putative uncharacterize 97.8 0.00064 2.2E-08 60.9 14.7 147 91-259 69-216 (240)
103 3u0r_A Apoptosis inhibitor 5; 97.7 0.047 1.6E-06 54.3 30.6 183 62-270 39-223 (507)
104 4gmo_A Putative uncharacterize 97.7 0.075 2.6E-06 57.9 32.8 153 49-213 36-218 (684)
105 1vsy_5 Proteasome activator BL 97.6 0.0017 5.9E-08 72.9 17.8 377 62-510 519-968 (997)
106 4gmo_A Putative uncharacterize 97.5 0.15 5.2E-06 55.5 32.8 151 132-292 36-215 (684)
107 3tt9_A Plakophilin-2; cell adh 97.4 0.0011 3.9E-08 60.7 11.4 111 389-508 8-124 (233)
108 3tt9_A Plakophilin-2; cell adh 97.4 0.0026 9E-08 58.2 13.5 174 133-315 10-204 (233)
109 1upk_A MO25 protein; transfera 97.3 0.11 3.7E-06 49.3 27.8 194 97-300 82-292 (341)
110 3l9t_A Putative uncharacterize 97.2 0.017 5.6E-07 51.9 15.8 159 32-217 56-215 (240)
111 1lrv_A LRV, leucine-rich repea 96.9 0.00024 8.3E-09 65.6 1.6 186 100-458 57-242 (244)
112 3u0r_A Apoptosis inhibitor 5; 96.7 0.59 2E-05 46.6 31.5 281 13-318 27-325 (507)
113 4atg_A TAF6; transcription, TF 96.5 0.13 4.4E-06 44.9 15.7 137 236-423 23-164 (196)
114 1vsy_4 Proteasome activator BL 96.5 1.4 4.7E-05 48.2 41.8 511 84-667 15-663 (799)
115 3gs3_A Symplekin, LD45768P; he 96.3 0.65 2.2E-05 42.8 23.3 188 66-258 30-251 (257)
116 1upk_A MO25 protein; transfera 95.9 0.54 1.8E-05 44.6 17.8 184 62-251 89-284 (341)
117 4atg_A TAF6; transcription, TF 95.9 0.37 1.3E-05 42.1 15.3 127 374-506 28-160 (196)
118 1lrv_A LRV, leucine-rich repea 95.7 0.0022 7.4E-08 59.2 0.7 83 365-504 160-242 (244)
119 1vsy_4 Proteasome activator BL 95.5 3.8 0.00013 44.9 36.0 96 367-465 355-458 (799)
120 3o2t_A Symplekin; heat repeat, 95.0 3 0.0001 40.9 26.7 191 14-213 24-260 (386)
121 3fga_B Serine/threonine-protei 94.8 3.3 0.00011 40.7 21.2 233 17-260 131-376 (403)
122 1lsh_A Lipovitellin (LV-1N, LV 94.7 4.6 0.00016 46.2 23.9 157 105-292 407-577 (1056)
123 3o2t_A Symplekin; heat repeat, 94.2 4.7 0.00016 39.5 27.0 174 385-571 59-272 (386)
124 3gs3_A Symplekin, LD45768P; he 94.1 3.6 0.00012 37.9 24.4 113 125-249 47-172 (257)
125 2npp_B PP2A, B subunit, serine 93.9 4.3 0.00015 40.6 18.6 225 17-257 164-406 (449)
126 1lsh_A Lipovitellin (LV-1N, LV 93.0 2.4 8.3E-05 48.4 17.4 175 48-253 391-579 (1056)
127 2jak_A Serine/threonine-protei 92.5 7.1 0.00024 38.2 17.4 235 406-668 143-388 (392)
128 3s4w_B Protein FACD2, fanconi 91.9 22 0.00074 40.9 25.6 120 426-554 393-512 (1323)
129 3ldz_A STAM-1, signal transduc 90.9 5.8 0.0002 32.6 13.5 79 476-554 39-119 (140)
130 1ho8_A Vacuolar ATP synthase s 90.6 16 0.00053 36.8 26.9 56 406-462 419-476 (480)
131 3dad_A FH1/FH2 domain-containi 90.0 8.6 0.00029 36.6 14.7 150 396-552 125-289 (339)
132 1juq_A ADP-ribosylation factor 89.5 3.6 0.00012 35.2 10.9 77 432-512 49-132 (171)
133 3fga_B Serine/threonine-protei 89.0 18 0.00063 35.5 24.7 266 192-516 96-374 (403)
134 1w9c_A CRM1 protein, exportin 87.6 19 0.00066 34.1 20.6 155 130-292 72-249 (321)
135 1x5b_A Signal transducing adap 86.1 5.5 0.00019 33.7 9.9 99 103-212 29-128 (163)
136 1mhq_A ADP-ribosylation factor 86.1 2.5 8.7E-05 35.1 7.6 77 130-212 37-119 (148)
137 3dad_A FH1/FH2 domain-containi 86.0 24 0.00083 33.6 17.9 147 138-292 125-287 (339)
138 3g2s_A C-terminal fragment of 85.9 2.7 9.1E-05 35.0 7.6 79 128-212 45-129 (149)
139 1juq_A ADP-ribosylation factor 85.8 3.9 0.00013 35.0 8.8 98 104-212 28-131 (171)
140 3g2s_A C-terminal fragment of 85.1 15 0.00052 30.4 12.2 78 476-553 45-130 (149)
141 3jxy_A Alkylpurine DNA glycosy 84.4 23 0.00079 32.0 14.8 160 32-219 43-205 (232)
142 1x5b_A Signal transducing adap 83.6 8.4 0.00029 32.6 9.9 78 477-554 50-130 (163)
143 3ldz_A STAM-1, signal transduc 81.8 18 0.0006 29.6 10.9 72 388-466 41-118 (140)
144 1ho8_A Vacuolar ATP synthase s 79.7 54 0.0018 33.0 27.1 58 445-508 417-476 (480)
145 1w9c_A CRM1 protein, exportin 78.6 46 0.0016 31.5 19.1 98 395-492 125-228 (321)
146 3qml_C Protein SLS1, nucleotid 78.0 25 0.00084 32.9 11.5 152 127-290 18-188 (315)
147 3zyq_A Hepatocyte growth facto 78.0 19 0.00065 32.4 10.8 98 103-211 22-120 (226)
148 1mhq_A ADP-ribosylation factor 77.7 17 0.00059 30.0 9.6 75 179-253 37-119 (148)
149 3zyq_A Hepatocyte growth facto 76.4 31 0.001 31.0 11.7 78 477-554 43-123 (226)
150 2npp_B PP2A, B subunit, serine 74.5 74 0.0025 31.8 23.2 205 82-292 170-400 (449)
151 3jxy_A Alkylpurine DNA glycosy 74.2 50 0.0017 29.7 15.1 154 100-287 68-223 (232)
152 1elk_A Target of MYB1; superhe 73.6 25 0.00086 29.4 9.7 97 104-211 31-132 (157)
153 2b6c_A Hypothetical protein EF 73.4 50 0.0017 29.4 14.3 158 32-218 37-197 (220)
154 1dvp_A HRS, hepatocyte growth 72.7 19 0.00064 32.3 9.3 97 104-211 20-117 (220)
155 2fv2_A RCD1 required for cell 71.7 59 0.002 29.5 18.6 161 15-210 3-175 (268)
156 1dvp_A HRS, hepatocyte growth 70.5 33 0.0011 30.6 10.5 77 477-553 40-119 (220)
157 1vdy_A Hypothetical protein (R 69.2 37 0.0013 27.6 9.3 33 260-292 47-79 (140)
158 2b6c_A Hypothetical protein EF 67.6 67 0.0023 28.6 13.9 139 97-260 59-198 (220)
159 1vdy_A Hypothetical protein (R 67.5 21 0.00072 29.1 7.5 73 385-460 45-128 (140)
160 3ebb_A Phospholipase A2-activa 67.1 86 0.0029 29.6 14.1 99 406-508 162-263 (304)
161 4fu3_A Regulation of nuclear P 64.7 52 0.0018 26.5 9.8 73 433-519 7-79 (135)
162 3d9j_A RNA-binding protein 16; 62.3 63 0.0021 26.5 9.7 84 437-529 9-96 (145)
163 1sz9_A PCF11 protein; RNA poly 59.8 71 0.0024 26.1 11.5 77 127-210 39-115 (144)
164 4flb_A Regulation of nuclear P 59.6 66 0.0023 25.7 10.3 68 431-512 6-73 (132)
165 1elk_A Target of MYB1; superhe 59.4 76 0.0026 26.4 10.3 76 388-466 52-134 (157)
166 4flb_A Regulation of nuclear P 55.9 77 0.0026 25.3 10.8 90 476-575 5-94 (132)
167 3qml_C Protein SLS1, nucleotid 55.8 1.1E+02 0.0039 28.5 11.0 94 105-208 82-188 (315)
168 2fv2_A RCD1 required for cell 53.6 1E+02 0.0035 28.0 10.0 100 193-293 115-226 (268)
169 1t06_A Hypothetical protein; s 53.1 53 0.0018 29.6 8.5 74 389-465 108-183 (235)
170 1t06_A Hypothetical protein; s 50.0 1.1E+02 0.0037 27.5 10.1 76 43-124 103-182 (235)
171 1sz9_A PCF11 protein; RNA poly 49.7 1.1E+02 0.0036 25.1 9.9 43 474-516 38-80 (144)
172 4fu3_A Regulation of nuclear P 44.7 1.2E+02 0.0041 24.3 8.8 66 479-553 7-72 (135)
173 3rru_A TOM1L1 protein; structu 38.4 1.4E+02 0.0048 24.6 8.1 78 476-553 50-134 (152)
174 2jak_A Serine/threonine-protei 38.2 2.9E+02 0.01 26.9 18.2 61 83-143 183-247 (392)
175 3rru_A TOM1L1 protein; structu 36.5 61 0.0021 26.8 5.6 99 103-212 30-133 (152)
176 3d9j_A RNA-binding protein 16; 34.0 1.9E+02 0.0065 23.5 9.4 89 370-462 24-119 (145)
177 3eg5_B Protein diaphanous homo 29.8 2.7E+02 0.0093 27.1 10.0 59 144-211 133-193 (383)
178 3ut4_A CTHE_2751, putative unc 27.2 2.4E+02 0.0083 22.6 11.8 102 85-208 23-129 (134)
179 3eg5_B Protein diaphanous homo 26.6 4.3E+02 0.015 25.7 10.8 100 192-292 132-247 (383)
180 2rg8_A Programmed cell death p 25.4 2.9E+02 0.01 23.0 8.1 100 388-506 11-113 (165)
181 3l3f_X Protein DOA1, DOA1/UFD3 21.4 4.5E+02 0.016 25.3 9.4 133 364-508 176-326 (362)
182 4f52_E Glomulin; cullin-ring E 21.0 7.2E+02 0.025 25.9 13.8 115 130-250 316-431 (596)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=5.5e-66 Score=587.81 Aligned_cols=638 Identities=46% Similarity=0.817 Sum_probs=561.8
Q ss_pred CCCCCCHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 005686 5 VAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (683)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~ 84 (683)
|+|+|++++++++.++|++++|||++ +|++|+++|++++++|+++.+|..++....+.++.+|++|+++|||.+.++|.
T Consensus 3 ~~w~~~~~~~~~l~~~l~~~~s~d~~-~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~ 81 (852)
T 4fdd_A 3 YEWKPDEQGLQQILQLLKESQSPDTT-IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ 81 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHTCSCHH-HHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG
T ss_pred CCCCCChhhHHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC
Confidence 78999999999999999999999999 99999999999999999999999999842478999999999999999999999
Q ss_pred cCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 85 ~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
.++++.+..||+.+++++.++++.+|+.++.+++.|++.++++.||++++.+.+.++++++.+|++++.+|+.+++..+.
T Consensus 82 ~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 82 NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999998876
Q ss_pred ccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 005686 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (683)
.+.... ....+..++|.++++++++++.+|..|++++..++...+..+.+.++.+++.++..++++++++|..++++
T Consensus 162 ~~~~~~---~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 162 ILDSDV---LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HHHHCS---SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred Hhchhh---hcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 543211 12447889999999999999999999999999888776666777788899999999999999999999999
Q ss_pred HHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhh
Q 005686 245 FNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (683)
Q Consensus 245 l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~ 324 (683)
|..+++.+++.+.+|++.+++.++..+++.++++|..|+++|.++++....++.+++++..++|.++..+.++++|++|+
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 99999999999999999999999999999999999999999999998755566678999999999999999999888887
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCC
Q 005686 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (683)
Q Consensus 325 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 404 (683)
+.++++ |++|+|....|++|+++..+++.++...|+.+++.+++.+.+.+.+++
T Consensus 319 ~~d~~e------------------------d~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~-- 372 (852)
T 4fdd_A 319 KGDVEG------------------------GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE-- 372 (852)
T ss_dssp HC------------------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSS--
T ss_pred cCCccc------------------------ccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCC--
Confidence 554221 111122226799999999999999999999999999999999999888
Q ss_pred ChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHH
Q 005686 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (683)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l 484 (683)
|+.|++|+.+++.+++++.+.+.++++.+++.+++.++|+++.||.+|++++|++++++... ....++..+++.+
T Consensus 373 -~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~~ll~~L 447 (852)
T 4fdd_A 373 -WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ----PPDTYLKPLMTEL 447 (852)
T ss_dssp -HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS----CTTTTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHH
Confidence 99999999999999999988888999999999999999999999999999999999988753 4578899999999
Q ss_pred HHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhh
Q 005686 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (683)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 564 (683)
++.+.|+++.||..|+++|+.+++.++..+.||++.+++.|...++..+.+....++++++.++..+|+.+.+++|++.+
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l 527 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML 527 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHH
Confidence 99999989999999999999999999999999999999999999998877777789999999999999888777899999
Q ss_pred hHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH----hhCCcccCCCCCchHHHHH
Q 005686 565 MPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA----KVDSVAAGAQYDKEFVVCC 640 (683)
Q Consensus 565 ~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~~a 640 (683)
||.+++.|....++++++..+++|++.++..+|..|.||++++++.+++.+.+.... ..++.. ....+++++..+
T Consensus 528 ~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~-~~~~d~~~~~~~ 606 (852)
T 4fdd_A 528 MPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ-YEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SCCCCTHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cCCCcchHHHHH
Confidence 999999998877666776779999999999999999999999999999998875421 111111 112367899999
Q ss_pred HHHHHHHHHHhccchHHhH--HhhcCCccccCCCCcceec
Q 005686 641 LDLLSGLAEGLGSGIESLV--ISLFPNLTWKSPKRKCILT 678 (683)
Q Consensus 641 ~~~l~~l~~~~~~~~~~~l--~~i~p~l~~~~~~~~~~~~ 678 (683)
+++++.++..+|.++.+|+ +.++|.+..+-.++.-.|+
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr 646 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR 646 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH
Confidence 9999999999999999998 7888988766555544444
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.2e-49 Score=456.68 Aligned_cols=586 Identities=19% Similarity=0.290 Sum_probs=496.3
Q ss_pred HHHHHHHHhh-cCCCCHHHHHHHHHHHHHHhcC--CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH-----------
Q 005686 15 NEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR----------- 80 (683)
Q Consensus 15 ~~l~~~l~~~-~s~~~~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~----------- 80 (683)
+++.++|.++ +|||++ +|++|+++|+++++. |+++..|++++.+ .+.++++|++|+++||+.+.
T Consensus 4 ~~l~~~L~~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQN-IRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHCSSHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence 5789999999 999999 999999999998874 9999999999984 24689999999999999974
Q ss_pred Hhhcc-CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CChHHHHHHHHHHhccC-ChhHHhHHHHHHHH
Q 005686 81 TAYKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN-DINHMEGAMDALSK 157 (683)
Q Consensus 81 ~~w~~-l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~l~~~l~~~l~s~-~~~~r~~al~~l~~ 157 (683)
+.|.. ++++.+..||+.+++.+.++++.+|+.++.+++.|++.+++ +.||++++.+.+.+.++ ++.+|++++.+++.
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44786 99999999999999999999999999999999999999866 69999999999999998 99999999999999
Q ss_pred HHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhccchhhHH--hHHHHHHHHHhhhCCC
Q 005686 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDP 233 (683)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~ 233 (683)
+++.+..... .+......+++.+...+.++ ++.||..|++++..++.+.+..+.. ....+++.+...+.++
T Consensus 162 l~~~~~~~~~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 162 MCESADPQSQ-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHTSSTTSS-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHcCChhhh-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC
Confidence 9987654321 12356788999999999997 8999999999999988776543321 1234677777888888
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhccCC---------------chh
Q 005686 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL---------------PHE 297 (683)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~---------------~~~ 297 (683)
++.+|..++++|..++..++..+.+|+. .+++.+...+.+.++++|..|+++|..+++... ..+
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 9999999999999999999999999999 999999999999999999999999999987521 112
Q ss_pred hHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 005686 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (683)
Q Consensus 298 ~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~ 377 (683)
...+++..++|.++..+...++ + + +++.|++|.++..+++.
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~-----------------------------------d-~---~d~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNE-----------------------------------D-P---EDDDWNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-----------------------------------C-----CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----------------------------------c-c---ccccCcHHHHHHHHHHH
Confidence 3566778888888877754221 0 1 11348899999999999
Q ss_pred HHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChhHHHHHHHH
Q 005686 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456 (683)
Q Consensus 378 l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 456 (683)
++..+|+.+++.+++.+.+.+++++ |+.|++|+.+++.+++++. +.+.++++++++.+++.+.|+++.||.+++++
T Consensus 358 l~~~~~~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~ 434 (861)
T 2bpt_A 358 FAQNCGNHILEPVLEFVEQNITADN---WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC 434 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHccHhHHHHHHHHHHHHcCCCC---hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999889999999999998887 9999999999999999874 67788999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHh
Q 005686 457 LSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA----EELAPRLEIILQHLMMAFGKY 532 (683)
Q Consensus 457 l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~----~~l~~~l~~i~~~L~~~l~~~ 532 (683)
+|++++.+...+ ....+++.+++.+++.++|+ +.||..|++++..+++.++ ..+.||++.+++.|...+.+.
T Consensus 435 l~~l~~~~~~~~---~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 435 IGRIADSVAESI---DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp HHHHHHHHGGGS---CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhhhc---CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 999999886421 13578999999999999886 8999999999999999986 678899999999999999854
Q ss_pred h--HhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcC--------CCC----Ccch-hhHHhHHHHHHHHhc
Q 005686 533 Q--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNS----DKDL-FPLLECFTSIAQALG 597 (683)
Q Consensus 533 ~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~----~~~~-~~~~~~l~~l~~~~g 597 (683)
+ ..++..++++++.++...|.... +|+..++|.+++.+... .++ ..++ ..++++++.++..+|
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVA--ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGH--HHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhH--HHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 45666899999999999987754 79999999999887742 100 1112 357899999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCc-hHHHHHHHHHHHHHHHhccchHHhHHhhcCCcccc
Q 005686 598 AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK-EFVVCCLDLLSGLAEGLGSGIESLVISLFPNLTWK 669 (683)
Q Consensus 598 ~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~~ 669 (683)
..+.||++.+++.+++.+++. +. .+++.++.+++.++..+|.+|.+|++.++|.|...
T Consensus 589 ~~~~~~~~~l~~~l~~~l~~~--------------~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 647 (861)
T 2bpt_A 589 SSVEPVADMLMGLFFRLLEKK--------------DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKA 647 (861)
T ss_dssp GGTGGGHHHHHHHHHHHHHST--------------TGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHccC--------------CCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999888642 12 57889999999999999999999999999988543
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=3.5e-48 Score=445.26 Aligned_cols=583 Identities=22% Similarity=0.318 Sum_probs=487.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHH-----------HHh
Q 005686 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (683)
Q Consensus 16 ~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i-----------~~~ 82 (683)
++.++|+.+++||++ +|++|+++|+++.++ |+++..|++++.+ .+.++.+|++|+++||+.+ .+.
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHH-HHHHHHHHHHHHHhcChhhHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 578999999999999 999999999998865 8999999999984 2468999999999999987 477
Q ss_pred hccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CChHHHHHHHHHHhccC--ChhHHhHHHHHHHHHH
Q 005686 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (683)
Q Consensus 83 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~l~~~l~~~l~s~--~~~~r~~al~~l~~l~ 159 (683)
|..++++.+..||+.+++.+.++++.+ +.++.+++.+++.+++ ..|+++++.+.+.+.++ ++.+|.+++.+++.++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998887788 9999999999998755 89999999999999998 8999999999999999
Q ss_pred hhchhccccCCCCCCcchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhccchhhHHhH--HHHHHHHHhhhCCCCH
Q 005686 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSA 235 (683)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~ 235 (683)
+.+.... +....+.+++.+.+++.++ +..+|..|++++..++.+.+..+.... ..+++.+...+.++++
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 231 (876)
T 1qgr_A 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHSCHHH-------HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HhcCHhh-------HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH
Confidence 8763211 1245788999999999887 789999999999999877654332111 2367777877888889
Q ss_pred HHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhccC-------------------Cc
Q 005686 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (683)
Q Consensus 236 ~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~-------------------~~ 295 (683)
++|..++++|..++..+++.+.+|+. .+++.++..+.+.++.+|..|+++|..+++.. ..
T Consensus 232 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (876)
T 1qgr_A 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchh
Confidence 99999999999999999999999999 99999999999999999999999999987641 11
Q ss_pred hhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH
Q 005686 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (683)
Q Consensus 296 ~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l 375 (683)
....++++..++|.++..+...++ |+ ++..|++|.++..++
T Consensus 312 ~~~~~~~~~~ll~~ll~~l~~~~~-------------------------------------d~--~~~~~~~r~~a~~~l 352 (876)
T 1qgr_A 312 KFYAKGALQYLVPILTQTLTKQDE-------------------------------------ND--DDDDWNPCKAAGVCL 352 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-------------------------------------SC--CTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhhcccc-------------------------------------cc--cccccHHHHHHHHHH
Confidence 223445667778877776653210 11 123589999999999
Q ss_pred HHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChhHHHHHH
Q 005686 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (683)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 454 (683)
+.++..+|+.+++.+++.+.+.+.+++ |+.|++++.+++.+++++. +.+.+++++++|.++..++|+++.||.+|+
T Consensus 353 ~~l~~~~~~~~~~~~l~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHCcHhhHHHHHHHHHHHccCCC---hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999998888999999999998888 9999999999999999886 567789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc--------------ccchHHHHH
Q 005686 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--------------EELAPRLEI 520 (683)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~--------------~~l~~~l~~ 520 (683)
++++++++.++... ...++++.+++.++..+.++ +.|+..|+++|..+++.++ +.+.||++.
T Consensus 430 ~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 430 WTVGRICELLPEAA---INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp HHHHHHHHHCGGGT---SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred HHHHHHHHhCchhc---ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHH
Confidence 99999999876421 14678999999999999885 8999999999999999876 348899999
Q ss_pred HHHHHHHHHHHhh---HhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcC--------CCCCcc----h-hh
Q 005686 521 ILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNSDKD----L-FP 584 (683)
Q Consensus 521 i~~~L~~~l~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~----~-~~ 584 (683)
+++.|...+...+ ...+..++++++.++..+|.+.. +|+..++|.+++.+... ++++++ + ..
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~ 583 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY--PAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhH--HHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH
Confidence 9999999988653 23345899999999999997654 79999999999888752 222322 2 24
Q ss_pred HHhHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhc
Q 005686 585 LLECFTSIAQALG-AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLF 663 (683)
Q Consensus 585 ~~~~l~~l~~~~g-~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~ 663 (683)
++.+++.++..+| ..+.||++.+++.+++.+.+.. ....+++.++.+++.++..+|..|.+|++.++
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 651 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA------------GSGGVQEDALMAVSTLVEVLGGEFLKYMEAFK 651 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhcc------------CCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6789999999999 8999999999999999887541 01357889999999999999999999999999
Q ss_pred CCccc
Q 005686 664 PNLTW 668 (683)
Q Consensus 664 p~l~~ 668 (683)
|.|..
T Consensus 652 ~~l~~ 656 (876)
T 1qgr_A 652 PFLGI 656 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88743
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.8e-48 Score=445.80 Aligned_cols=599 Identities=13% Similarity=0.185 Sum_probs=465.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc------cCC
Q 005686 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK------SMS 87 (683)
Q Consensus 14 ~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~------~l~ 87 (683)
++++.++|.+++|||++ +| |+++|+++++.|+|+..|++++.+ .+.+.++|++|+++|||.|.++|. .++
T Consensus 4 ~~~l~~~L~~~~spd~~-~r--Ae~~L~~~~~~p~~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~ 79 (960)
T 1wa5_C 4 LETVAKFLAESVIASTA-KT--SERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79 (960)
T ss_dssp HHHHHHHHHHTTSGGGH-HH--HHHHHHHHHTSTTHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred HHHHHHHHHHhcCCCHH-HH--HHHHHHHhhcCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Confidence 56899999999999998 88 999999999999999999999974 356889999999999999999998 799
Q ss_pred HhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccc
Q 005686 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (683)
Q Consensus 88 ~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~ 167 (683)
++.|..||+.+++.+.++++.+|++++.+++.|++.++++.||++++.+.+.++++++..+.+++.++..+++.+...+.
T Consensus 80 ~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999987779999999999999999998999999999999999999989999999999999997654222
Q ss_pred cC-CCCCCcchhHhhHHHHHH-------hhcCCCH---------HHHHHHHHHHHHHH-hccchhhHHhHHHHHHHHHhh
Q 005686 168 SD-VPGLAECPINIFLPRLLQ-------FFQSPHT---------SLRKLSLGSVNQFI-MLMPSALFVSMDQYLQGLFLL 229 (683)
Q Consensus 168 ~~-~~~~~~~~~~~i~~~l~~-------~l~~~~~---------~vr~~a~~~l~~~~-~~~~~~~~~~~~~~l~~l~~~ 229 (683)
.. ...-+...+..+++.+++ .+.++.. .++..+++++..+. ...|..+.+.+..+++.+.+.
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 10 000000112333333332 3444321 33345777776655 344666666777777766654
Q ss_pred hCC-----------CC----HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhc-----CCChHHHHHHhhHHHHh
Q 005686 230 SND-----------PS----AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSY 289 (683)
Q Consensus 230 ~~~-----------~~----~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~vr~~a~~~l~~l 289 (683)
+.. .+ +.+++.++++|..+++.+++.+.+|++.+++.++..+. ..++.++..+++||.++
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 421 01 35789999999999999999999999999999887764 45688999999999999
Q ss_pred hccCCchhhHH--hhhhhhH-HHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccccc
Q 005686 290 FEAQLPHENLK--EFLPRLV-PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (683)
Q Consensus 290 ~~~~~~~~~~~--~~l~~l~-~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~ 366 (683)
++.+..+..++ +++.+++ +.+++.|..+++|++.|++|++| +++ +|.+.++.|+
T Consensus 320 ~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e-------~i~----------------~d~e~~d~~s 376 (960)
T 1wa5_C 320 TRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIE-------YIR----------------RDLEGSDTDT 376 (960)
T ss_dssp HTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHH-------HHH----------------HHHHC----C
T ss_pred hCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHH-------HHH----------------hccCcccccC
Confidence 87644445554 8999999 78889999988888888766543 111 0001123468
Q ss_pred HHHHHHHHHHHHHhhcCccchhhhHHHHHHHHc------cCCCCChhhHHHHHHHHHHHHhcc---hhhhhh-----hHH
Q 005686 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS------ASGDEAWKDREAAVLALGAIAEGC---IKGLYP-----HLS 432 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~~~~r~aal~~l~~l~~~~---~~~~~~-----~~~ 432 (683)
+|.+|..+++.++..+++.+++.+++.+.+.++ +++ |+.|++|+++++.++++. ...... .+.
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~---w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN---WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C---HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchh---HHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 999999999999999998888899999888887 455 999999999999998752 211221 343
Q ss_pred HH-HHHHhhccCCC---ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 433 EI-VAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 433 ~l-~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
.+ ...+++.+.|+ ++.||.+|+|++|++++++. ..++.++++.+++.+.|+++.||.+|+.||..+++
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--------~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--------KAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--------HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 43 34566667777 99999999999999998752 46899999999999999889999999999999997
Q ss_pred H-----------hcccchHHHHHHHHHHHHHHHHh-----hHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHH
Q 005686 509 E-----------AAEELAPRLEIILQHLMMAFGKY-----QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKW 572 (683)
Q Consensus 509 ~-----------~~~~l~~~l~~i~~~L~~~l~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 572 (683)
. .++.+.||++.+++.|...+++. +......++++|+.++...+..+. +|+..+++.+...+
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~--p~~~~l~~~L~~~l 603 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ--PLFPQLLAQFIEIV 603 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG--GGHHHHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Confidence 4 24568999999999999999875 122445899999999999998885 79999999999988
Q ss_pred hcCCC--CCcch-hhHHhHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHH
Q 005686 573 QQLPN--SDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (683)
Q Consensus 573 ~~~~~--~~~~~-~~~~~~l~~l~~~~g~-~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~ 648 (683)
..... +++.. ..+++|++.++...++ .+.++.+.++|.+..+|++. ..++...++..++.+.
T Consensus 604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~--------------~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED--------------IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT--------------CTTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh--------------hHhhHHHHHHHHHHHH
Confidence 76421 23333 3689999999988665 67788889999888888642 2357777888899988
Q ss_pred HHhccchHHhHHhhcCCcc
Q 005686 649 EGLGSGIESLVISLFPNLT 667 (683)
Q Consensus 649 ~~~~~~~~~~l~~i~p~l~ 667 (683)
... +++.+|+..++|.|.
T Consensus 670 ~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 670 EQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHC-SSCCTTTGGGHHHHT
T ss_pred Hhc-cCCCHHHHHHHHHHc
Confidence 877 678888887777665
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-44 Score=415.50 Aligned_cols=595 Identities=12% Similarity=0.166 Sum_probs=428.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHH
Q 005686 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (683)
Q Consensus 14 ~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~ 93 (683)
++++.+++..+++||++ .|++|+++|+++++.|++|.++..+|.. +.++++|++|+++||+.|.++|..++++.+..
T Consensus 6 ~~~l~~~l~~~~~~d~~-~r~~A~~~L~~~~~~p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 82 (971)
T 2x1g_F 6 IARLEEAVVSFYRSNSQ-NQAITHEWLTDAEASPQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENREE 82 (971)
T ss_dssp -----CTHHHHHTSTTT-C----CHHHHHTTTSTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHH
T ss_pred HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHH
Confidence 45677888888899999 9999999999999999999999999975 77999999999999999999999999999999
Q ss_pred HHHHHhhhhhc---CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccC------ChhHHhHHHHHHHHHHhhchh
Q 005686 94 IKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 94 i~~~Ll~~l~~---~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~------~~~~r~~al~~l~~l~~~~~~ 164 (683)
+|+.+++.+.+ .++.||++++.+++.|++.+++ .||++++.+.+.++++ ++..+..++.+|..++++...
T Consensus 83 ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~ 161 (971)
T 2x1g_F 83 LKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQV 161 (971)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhc
Confidence 99999998864 3689999999999999999988 9999999999999875 567899999999999976432
Q ss_pred ccccCCC----CCCcchhHhhHHHHHHhhcCC-C-------HHHHHHHHHHHHHHHh--ccchh----h-----------
Q 005686 165 VLDSDVP----GLAECPINIFLPRLLQFFQSP-H-------TSLRKLSLGSVNQFIM--LMPSA----L----------- 215 (683)
Q Consensus 165 ~~~~~~~----~~~~~~~~~i~~~l~~~l~~~-~-------~~vr~~a~~~l~~~~~--~~~~~----~----------- 215 (683)
.-....+ ..+...++.+++.+.+.+.+. + ..++..+++|+..++. ++|.. +
T Consensus 162 ~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~~ 241 (971)
T 2x1g_F 162 IHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKC 241 (971)
T ss_dssp CCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHhhhhhh
Confidence 1110000 001122445555555555431 1 2788899999987766 33311 0
Q ss_pred ---------------------------------------HHhHHHHHHHHHh-------hhCCCC---HHHHHHHHHHHH
Q 005686 216 ---------------------------------------FVSMDQYLQGLFL-------LSNDPS---AEVRKLVCAAFN 246 (683)
Q Consensus 216 ---------------------------------------~~~~~~~l~~l~~-------~~~~~~---~~~~~~~~~~l~ 246 (683)
.+.+..+++.++. ...+.+ ++....+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~ 321 (971)
T 2x1g_F 242 YWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFV 321 (971)
T ss_dssp HSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHH
T ss_pred ccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 0011122222222 123334 267777788888
Q ss_pred HHHhhCccchh-----------hhHHHHHHHHHHhhcC-----CChHHHHHHhhHHHHhhcc----------CCchhhHH
Q 005686 247 LLIEVRPSFLE-----------PHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA----------QLPHENLK 300 (683)
Q Consensus 247 ~l~~~~~~~~~-----------~~l~~l~~~~~~~~~~-----~~~~vr~~a~~~l~~l~~~----------~~~~~~~~ 300 (683)
.+.+.+...+. +++..+++.++..... .++++...+++||..+++. .......+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~ 401 (971)
T 2x1g_F 322 SSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIK 401 (971)
T ss_dssp HHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 87776655443 5666777777776533 4778999999999998762 11234567
Q ss_pred hhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 005686 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (683)
Q Consensus 301 ~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~ 380 (683)
+++.++++.++..+...+++ + ++ +.|+++.+...+.|+++..++..++.
T Consensus 402 ~~~~~ll~~l~~~~~~p~~~-~-~~-----------------------------~~d~~e~~~f~~~R~~~~~~l~~~~~ 450 (971)
T 2x1g_F 402 PLYAHLTRILVRKSEQPDEK-S-LA-----------------------------KWSSDDLECFRCYRQDISDTFMYCYD 450 (971)
T ss_dssp HHHHHHHHHHHHHTSCCCTT-T-TS-----------------------------CSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCcc-c-cc-----------------------------ccCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998877653321 1 10 00111111223589999999999999
Q ss_pred hcCccchhhhHHHHHHHHcc-----CCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC--CCChhHHHHH
Q 005686 381 VFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--DKFPLIRSIS 453 (683)
Q Consensus 381 ~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a 453 (683)
..|+.+++.+++.+.+.+.+ ++ |+.|++++++++.+++++.+...++++++++ ++..+. |.++.||.++
T Consensus 451 ~~~~~~l~~~~~~l~~~l~~~~~~~~~---w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 451 VLNDYILEILAAMLDEAIADLQRHPTH---WTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHCTTC---CHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHH
Confidence 99988888999998888865 45 9999999999999999987666788888888 445555 5699999999
Q ss_pred HHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh-
Q 005686 454 CWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY- 532 (683)
Q Consensus 454 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~- 532 (683)
++++|++++++.. ...++..+++.++..+ + +.|+..|+.|+..+++.++..+.||++.+++.+...+.+.
T Consensus 527 ~~~l~~~~~~l~~------~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~ 597 (971)
T 2x1g_F 527 LETMGSYCNWLME------NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGR 597 (971)
T ss_dssp HHHHHHTHHHHC----------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhc------CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence 9999999999864 3479999999999999 4 7899999999999999999999999999999999999973
Q ss_pred -hHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCC---c----chhhHHhHHHHHHHHhcc------
Q 005686 533 -QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD---K----DLFPLLECFTSIAQALGA------ 598 (683)
Q Consensus 533 -~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~----~~~~~~~~l~~l~~~~g~------ 598 (683)
+...+..++++++.++.+.+.+- ..+|+..+++++.+.|....... . .....+++++.+...++.
T Consensus 598 ~~~~~~~~~~~ai~~i~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~ 676 (971)
T 2x1g_F 598 MKNSDSVRLMFSIGKLMSLLRPEE-IPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQA 676 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCTTH-HHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred CChHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccc
Confidence 45667799999999998776222 24799999999988877542111 1 123566777777776654
Q ss_pred -------ccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCcccc
Q 005686 599 -------GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLTWK 669 (683)
Q Consensus 599 -------~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~~ 669 (683)
.+.+|.+.+++.+..++++.. .+.++.+.++.+++.++..+|+.+.||++.+++.|...
T Consensus 677 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~------------~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~ 742 (971)
T 2x1g_F 677 TDQPIVQPVLLVMQRTMPIFKRIAEMWV------------EEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVAS 742 (971)
T ss_dssp -------CCHHHHHTTHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhcc------------ccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHH
Confidence 345667778887777775421 24578999999999999999999999999999888533
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.5e-43 Score=409.29 Aligned_cols=594 Identities=15% Similarity=0.193 Sum_probs=448.9
Q ss_pred HhHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhH
Q 005686 12 QGFNEICRLLEQ-QISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (683)
Q Consensus 12 ~~~~~l~~~l~~-~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~ 90 (683)
..++++.+++.. ..++|++ .|++|+++|++++++|++|..+..++.+ +.++++|++|+++||+.|.++|..++++.
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~-~r~~A~~~L~~~~~~p~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 97 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIE-NKNLAQKWLMQAQVSPQAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTDQ 97 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGGG
T ss_pred hhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHhcCHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhCHHhCCHHH
Confidence 356778888888 4468888 9999999999999999999999999875 78999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhc---CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhcc-----CChhHHhHHHHHHHHHHhhc
Q 005686 91 QQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDI 162 (683)
Q Consensus 91 ~~~i~~~Ll~~l~~---~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s-----~~~~~r~~al~~l~~l~~~~ 162 (683)
+..||+.|++.+.+ .++.||++++.+++.|++.+++..||++++.+.+.+++ +++..+..++.+|..++++.
T Consensus 98 ~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~ 177 (963)
T 2x19_B 98 YESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEF 177 (963)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHH
Confidence 99999999998864 36899999999999999999999999999999999876 36668899999999999764
Q ss_pred hhc-c----ccCCCCCCcchhHhhHHHHHHhhcCCC--HHHHHHHHHHHHHHH---------------------------
Q 005686 163 PQV-L----DSDVPGLAECPINIFLPRLLQFFQSPH--TSLRKLSLGSVNQFI--------------------------- 208 (683)
Q Consensus 163 ~~~-~----~~~~~~~~~~~~~~i~~~l~~~l~~~~--~~vr~~a~~~l~~~~--------------------------- 208 (683)
... . +...+..+...++.+++.+.+.+.+.+ ..++..+++|+..++
T Consensus 178 ~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~ 257 (963)
T 2x19_B 178 QTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFD 257 (963)
T ss_dssp TTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHH
T ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHH
Confidence 322 1 011112223345566666666665432 135555666554433
Q ss_pred ----------hcc-chhhHHhHHHHHHHHHhh-------hCCCCHHHHHHHHHHHHHHHhhCccchh------hhHHHHH
Q 005686 209 ----------MLM-PSALFVSMDQYLQGLFLL-------SNDPSAEVRKLVCAAFNLLIEVRPSFLE------PHLRNLF 264 (683)
Q Consensus 209 ----------~~~-~~~~~~~~~~~l~~l~~~-------~~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~l~~l~ 264 (683)
... +....+.+..+++.++.. ..+.+.+....+++.+..+.+.++..+. +++..++
T Consensus 258 ~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l 337 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALV 337 (963)
T ss_dssp HHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHH
Confidence 211 111112223333333321 2334556677788888888776665553 5677788
Q ss_pred HHHHHhhcC-----CChHHHHHHhhHHHHhhcc---------CCchhhHHhhhhhhHHHHHhhcccChhhh-hhhhhccc
Q 005686 265 EYMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLPHENLKEFLPRLVPVLLSNMIYADDDE-SLVEAEED 329 (683)
Q Consensus 265 ~~~~~~~~~-----~~~~vr~~a~~~l~~l~~~---------~~~~~~~~~~l~~l~~~l~~~l~~~~~d~-~~~~~~~~ 329 (683)
+.++....+ .++++...+++||..+++. +.....+.+++.++++.++..+...+++. +.|++
T Consensus 338 ~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~--- 414 (963)
T 2x19_B 338 NMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS--- 414 (963)
T ss_dssp HHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCH---
T ss_pred HHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCh---
Confidence 888877664 4677889999999998873 11234567899999999988886544321 11111
Q ss_pred CCCCCccCCCCcccccccCCCCCCCCCCCccccccc-cHHHHHHHHHHHHHhhcCccchhhhHHHHHHHH----ccCCCC
Q 005686 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL----SASGDE 404 (683)
Q Consensus 330 e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l----~~~~~~ 404 (683)
| +.+.| ..|+++.+++..++...|+.+++.+++.+.+.+ .+.+
T Consensus 415 ---------------------------d---e~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~-- 462 (963)
T 2x19_B 415 ---------------------------D---EKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYS-- 462 (963)
T ss_dssp ---------------------------H---HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCC--
T ss_pred ---------------------------h---HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCc--
Confidence 0 01112 468899999999999999888888999988888 4455
Q ss_pred ChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHH
Q 005686 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (683)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l 484 (683)
|+.|++++++++.+++++.+...++++++++.+. .+.++++.||.++++++|++++++.. ..++++.+++.+
T Consensus 463 -w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~------~~~~l~~vl~~l 534 (963)
T 2x19_B 463 -WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLAD------HPVMINSVLPLV 534 (963)
T ss_dssp -HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHH------CHHHHTTTHHHH
T ss_pred -hHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHh------CHHHHHHHHHHH
Confidence 9999999999999999987666678888888554 55557999999999999999999874 358899999999
Q ss_pred HHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh--hHhHHHHHHHHHHHHHHHhc-cccCchhHH
Q 005686 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVG-FELNQPVYL 561 (683)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~--~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~ 561 (683)
+..+++ +.|+..|+.+|..+++.++..+.||++.+++.+...+.+. +...+..++++++.++.+.+ ..+ .+|+
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~--~~~~ 610 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI--LKNL 610 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH--HHHH
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH--HHHH
Confidence 999975 8999999999999999999999999999999999999863 34566789999999998876 443 3799
Q ss_pred HhhhHHHHHHHhcCCCC--Ccc----hhhHHhHHHHHHHHhccc----------------------cccchHHHHHHHHH
Q 005686 562 DILMPPLIAKWQQLPNS--DKD----LFPLLECFTSIAQALGAG----------------------FTQFAQPVFQRCIN 613 (683)
Q Consensus 562 ~~~~~~l~~~~~~~~~~--~~~----~~~~~~~l~~l~~~~g~~----------------------f~~~~~~~~~~l~~ 613 (683)
+.+|+++...|...... +.+ +...++|++.+++.++.. +.++.+.+++.+.+
T Consensus 611 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (963)
T 2x19_B 611 HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQK 690 (963)
T ss_dssp HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHH
Confidence 99999999988753211 222 236789999999998742 33466667777766
Q ss_pred HHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCcc
Q 005686 614 IIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLT 667 (683)
Q Consensus 614 ~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~ 667 (683)
+++... .+.++++.++.+++.++..+|+.+.+|++.+++.+.
T Consensus 691 ~l~~~~------------~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~ 732 (963)
T 2x19_B 691 VLSKWL------------NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLG 732 (963)
T ss_dssp HHHHHT------------TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHH
T ss_pred HHHhcc------------CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHH
Confidence 666531 245688899999999999999999999999887663
No 7
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.7e-43 Score=409.29 Aligned_cols=572 Identities=14% Similarity=0.237 Sum_probs=432.7
Q ss_pred CHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHh
Q 005686 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (683)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~ 89 (683)
++..++++.++|..+++|+++ .|++|+++|++++++|++|..+..++.+ +.++++|++|+++||+.|.++|..++++
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~-~r~~Ae~~L~~~~~~p~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHSTTGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred CcccHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence 345678999999999999999 9999999999999999999999999975 7799999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcC---------ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHh
Q 005686 90 NQQYIKSELLPCLGAA---------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICE 160 (683)
Q Consensus 90 ~~~~i~~~Ll~~l~~~---------~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~ 160 (683)
.+..||+.+++.+.+. ++.+|++++.+++.|++.++++.||++++.+.+.++ .++..+..++.+|..+++
T Consensus 88 ~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~e 166 (1049)
T 3m1i_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHH
Confidence 9999999999988642 478999999999999999999999999999999996 566778899999999998
Q ss_pred hchhccccCCC--------CCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHh---
Q 005686 161 DIPQVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL--- 228 (683)
Q Consensus 161 ~~~~~~~~~~~--------~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~--- 228 (683)
.....-..... ..+...++.+++.+.+++.+ ++..++..+++|+..++.+.|....-. ..+++.+++
T Consensus 167 ev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~-~~ll~~l~~~~l 245 (1049)
T 3m1i_C 167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE-TNILELLSTKFM 245 (1049)
T ss_dssp HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHTHHH
T ss_pred HHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh-hhHHHHHHHHhC
Confidence 76642111000 00112245556666666654 467899999999999888876322100 011111111
Q ss_pred ---------------hh--------------------------------------------CCCCHHHHHHHHHHHHHHH
Q 005686 229 ---------------LS--------------------------------------------NDPSAEVRKLVCAAFNLLI 249 (683)
Q Consensus 229 ---------------~~--------------------------------------------~~~~~~~~~~~~~~l~~l~ 249 (683)
.. ++.+.++...+++.+..+.
T Consensus 246 ~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~ 325 (1049)
T 3m1i_C 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYL 325 (1049)
T ss_dssp HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 00 1122233334444444333
Q ss_pred hhCcc------chhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhc----cCCchhhHHhhhhhhHHHHHhhcccChh
Q 005686 250 EVRPS------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE----AQLPHENLKEFLPRLVPVLLSNMIYADD 319 (683)
Q Consensus 250 ~~~~~------~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~----~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 319 (683)
+.+.. ...+++..++++++.+...++++++..+++||..+++ .+......++++.++++.++..|.+.+
T Consensus 326 ~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e- 404 (1049)
T 3m1i_C 326 ARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE- 404 (1049)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT-
T ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc-
Confidence 32211 1345666778888887777888999999999999988 444567788999999999999998754
Q ss_pred hhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHc
Q 005686 320 DESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS 399 (683)
Q Consensus 320 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 399 (683)
|.+|.++++. +++|. .. + +.+.|+.|+++..+|..++...+..+++.+++.+.+.+.
T Consensus 405 d~~~~~dd~~-------e~~r~------------~~-~---d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~ 461 (1049)
T 3m1i_C 405 EVLVVENDEG-------EIVRE------------FV-K---ESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID 461 (1049)
T ss_dssp TCCEEECTTS-------CEEEC------------SS-C---CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred ceeeeeCCCC-------cchHh------------hh-c---cchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC
Confidence 3333322211 11221 00 1 123467899999999999988887888889999988886
Q ss_pred cCCCCChhhHHHHHHHHHHHHhcchhhh-hhhHHHHHHHHhhccC-----CCChhHHHHHHHHHHHHHHHHHhhhCCCcc
Q 005686 400 ASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (683)
Q Consensus 400 ~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (683)
++ ..+|+.|+++++++|.+++++.+.. .++++++++.+..... |+++.||..+++++|++++++.. .
T Consensus 462 ~~-~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~------~ 534 (1049)
T 3m1i_C 462 GS-EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA------H 534 (1049)
T ss_dssp SS-SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH------C
T ss_pred CC-CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh------H
Confidence 42 2239999999999999998875443 3457888887776432 46788888899999999999874 4
Q ss_pred hhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccch--------HHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 005686 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA--------PRLEIILQHLMMAFGKYQRRNLRIVYDAIG 545 (683)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~--------~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~ 545 (683)
..++..+++.++..+.+++++|+..|+.||.++++.++..+. ||++.+++.+...+.+.+.+....++++++
T Consensus 535 ~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 689999999999999998999999999999999999987764 999999999999998876667778999999
Q ss_pred HHHHHhccccCchhHHHhhhHHHHHHHhcCCC------C---Cc----chhhHHhHHHHHHHHhccccccchHHHHHHHH
Q 005686 546 TLADAVGFELNQPVYLDILMPPLIAKWQQLPN------S---DK----DLFPLLECFTSIAQALGAGFTQFAQPVFQRCI 612 (683)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~---~~----~~~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~ 612 (683)
.++.+.+..-...+|+..+|+++.+.|.+... + +. .+..+++|+..+++.+|..|.|+++.++..++
T Consensus 615 ~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l 694 (1049)
T 3m1i_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNML 694 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99998873111347999999998887764210 0 11 12356889999999999999999999998887
Q ss_pred HHHHH
Q 005686 613 NIIQT 617 (683)
Q Consensus 613 ~~l~~ 617 (683)
.++..
T Consensus 695 ~~~~~ 699 (1049)
T 3m1i_C 695 QLYRA 699 (1049)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 8
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.1e-40 Score=375.67 Aligned_cols=572 Identities=15% Similarity=0.244 Sum_probs=418.8
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHH
Q 005686 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (683)
Q Consensus 13 ~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~ 92 (683)
.++++.+++..+++|+++ .|++|+++|++++++|++|..+..+|.. +.++++|++|+++|++.|.++|..++++.+.
T Consensus 14 dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~ 90 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRI 90 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred CHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 356788888889999988 9999999999999999999999999975 7789999999999999999999999999999
Q ss_pred HHHHHHhhhhhc----C-----ChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 005686 93 YIKSELLPCLGA----A-----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (683)
Q Consensus 93 ~i~~~Ll~~l~~----~-----~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 163 (683)
.||+.+++.+.. + .+.++++++.+++.|++.+++..||++++.+.+.+++ ++..+..++.+|..+.++..
T Consensus 91 ~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 91 GIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999997742 1 4678889999999999999999999999999999965 45668888999998888764
Q ss_pred hccccCCC--------CCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccchh--------------------
Q 005686 164 QVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA-------------------- 214 (683)
Q Consensus 164 ~~~~~~~~--------~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~-------------------- 214 (683)
..-..+.. ..+...++.+++.+.+.+.+ .++.+...+++|+.+++.++|-.
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~~ 249 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPD 249 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCCHH
Confidence 42111100 00011223333333344432 34455555555555555554421
Q ss_pred -----------------------hHHhH----HHHHHHH-H-------------hhhCCCCHHHHHHHHHHHHHHHhhCc
Q 005686 215 -----------------------LFVSM----DQYLQGL-F-------------LLSNDPSAEVRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 215 -----------------------~~~~~----~~~l~~l-~-------------~~~~~~~~~~~~~~~~~l~~l~~~~~ 253 (683)
+.+.+ ..+++.+ . ...++.|.+.....+..+..+.+.+.
T Consensus 250 ~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~ 329 (1023)
T 4hat_C 250 TRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329 (1023)
T ss_dssp HHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 11111 1111111 0 00112234445555666666655554
Q ss_pred cchh--hh----HHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc----CCchhhHHhhhhhhHHHHHhhcccChhhhhh
Q 005686 254 SFLE--PH----LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (683)
Q Consensus 254 ~~~~--~~----l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 323 (683)
..+. ++ +...+..++.+...++.++...+++||..+++. +.....+.|++.++++.++..+...++.. .
T Consensus 330 ~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~-i 408 (1023)
T 4hat_C 330 ALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL-V 408 (1023)
T ss_dssp GGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCC-E
T ss_pred HHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccc-c
Confidence 4443 22 233344666666777889999999999999875 11345678999999999999998876431 0
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCC
Q 005686 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD 403 (683)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 403 (683)
+++++.+ +.|.+ . .|.|+...| +...++|..++...+.++++.+++.+.+.+.++ .
T Consensus 409 ve~d~~~-------~~~e~-----------~--~d~d~~~~f---~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~-~ 464 (1023)
T 4hat_C 409 VENDEGE-------IVREF-----------V--KESDTIQLY---KSEREVLVYLTHLNVIDTEEIMISKLARQIDGS-E 464 (1023)
T ss_dssp EECTTSC-------EEECS-----------S--CCGGGHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSST-T
T ss_pred CCCCCcc-------HHHHh-----------c--cchHHHHHH---HHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC-C
Confidence 1111000 00000 0 011111222 122378888888888888888888888877642 1
Q ss_pred CChhhHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhhccC-----CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH
Q 005686 404 EAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF 477 (683)
Q Consensus 404 ~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 477 (683)
.+|+.|+|+++++|+++++..+ ...++++++++.++..+. |+.+.||.+++|++|++++++.. ...++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~------~~~~L 538 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HWNFL 538 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH------CHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc------cHHHH
Confidence 2399999999999999998854 367899999999998876 46778999999999999999973 57899
Q ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccc--------hHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q 005686 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (683)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l--------~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (683)
+++++.+++.+.+++++|+.+||+||.++|+.|+..+ .||++.+++.+...+.+.+...+..++++++.++.
T Consensus 539 ~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999998889999999999999999997655 57999999999999887777778899999999999
Q ss_pred HhccccCchhHHHhhhHHHHHHHhcCCC---C----------CcchhhHHhHHHHHHHHhccccccchHHHHHHHHHHHH
Q 005686 550 AVGFELNQPVYLDILMPPLIAKWQQLPN---S----------DKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (683)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~----------~~~~~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~ 616 (683)
+++.....+.+++.+|+++...|+++.. . .+++..+++|++.++.++|..|.|++..+++.++++.+
T Consensus 619 ~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~ 698 (1023)
T 4hat_C 619 EERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1023)
T ss_dssp TCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 9886543457999999999988876431 0 12245689999999999999999999999999998876
Q ss_pred HHH
Q 005686 617 TQQ 619 (683)
Q Consensus 617 ~~~ 619 (683)
..+
T Consensus 699 ~~s 701 (1023)
T 4hat_C 699 AVS 701 (1023)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=1.6e-40 Score=352.48 Aligned_cols=418 Identities=23% Similarity=0.381 Sum_probs=354.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHh-----------
Q 005686 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA----------- 82 (683)
Q Consensus 16 ~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~----------- 82 (683)
+|.++|.++++||++ +|++|+++|+++++ .|+++..|++++.+ .+.++.+|++|+++||+.+.+.
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp CHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhChHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 578999999999999 99999999999886 59999999999984 3468999999999999998543
Q ss_pred hccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CChHHHHHHHHHHhccC--ChhHHhHHHHHHHHHH
Q 005686 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (683)
Q Consensus 83 w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~l~~~l~~~l~s~--~~~~r~~al~~l~~l~ 159 (683)
|..++++.+..||+.|++.+.++++.+ +.++.+++.|++.+++ +.|+++++.+.+.++++ ++.+|.+++.+|+.++
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 788999999999999999999888888 9999999999999765 59999999999999988 8999999999999999
Q ss_pred hhc-hhccccCCCCCCcchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhccchhhHHh-H-HHHHHHHHhhhCCCC
Q 005686 160 EDI-PQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVS-M-DQYLQGLFLLSNDPS 234 (683)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~~~~~~-~-~~~l~~l~~~~~~~~ 234 (683)
+.+ +..+ ....+.+++.+.+++.++ ++.||..|++++..++.+........ + ..+++.+.....+++
T Consensus 159 ~~~~~~~~--------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (462)
T 1ibr_B 159 QDIDPEQL--------QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD 230 (462)
T ss_dssp HHSCGGGT--------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred HhCCchhh--------HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC
Confidence 976 3322 245788999999999998 79999999999999877654332211 1 224677777778889
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhccC-------------------C
Q 005686 235 AEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------L 294 (683)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~-------------------~ 294 (683)
+++|..++++|..++..++..+.+|++ .+++.++..+++.++++|..|+++|..+++.. .
T Consensus 231 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (462)
T 1ibr_B 231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT 310 (462)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccch
Confidence 999999999999999999999999999 99999998899999999999999999998652 1
Q ss_pred chhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHH
Q 005686 295 PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAA 374 (683)
Q Consensus 295 ~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~ 374 (683)
....+++++..++|.++..+...++ | +.+..|++|.++..+
T Consensus 311 ~~~~~~~~~~~l~p~l~~~l~~~d~-------------------------------------d--~~~~~~~~r~~a~~~ 351 (462)
T 1ibr_B 311 SKFYAKGALQYLVPILTQTLTKQDE-------------------------------------N--DDDDDWNPCKAAGVC 351 (462)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCS-------------------------------------S--CCTTCCSHHHHHHHH
T ss_pred hHHHHHHHhhhccHHHHHHHHhccc-------------------------------------c--cccccchHHHHHHHH
Confidence 2334566778888888777653211 0 112458999999999
Q ss_pred HHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChhHHHHH
Q 005686 375 LDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSIS 453 (683)
Q Consensus 375 l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 453 (683)
++.++..+|+.+++.+++.+.+.+++++ |+.|++|+.+++.+++++. +.+.++++.++|.+++.++|+++.||.+|
T Consensus 352 L~~l~~~~~~~~~~~~~~~l~~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a 428 (462)
T 1ibr_B 352 LMLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA 428 (462)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999889999999999999888 9999999999999999875 55678889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhc
Q 005686 454 CWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (683)
Q Consensus 454 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 489 (683)
+++++++++.+...+ ...++++++++.+++.|+
T Consensus 429 ~~~l~~~~~~~~~~~---~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 429 AWTVGRICELLPEAA---INDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHHGGGGC---CSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHhccccc---ccHHHHHHHHHHHHHHhc
Confidence 999999999987531 135789999999987664
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.3e-39 Score=367.14 Aligned_cols=595 Identities=15% Similarity=0.184 Sum_probs=424.3
Q ss_pred HHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHh--
Q 005686 14 FNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS-- 89 (683)
Q Consensus 14 ~~~l~~~l~~~~s~--~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~-- 89 (683)
++++.++++.+++| |++ .|++|+++|+++++.|++|..+..+|......++++|++|+++|++.|+ .++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~ 79 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPI-IKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTS
T ss_pred HHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhh
Confidence 57889999888887 567 9999999999999999999999999974212389999999999999998 58889
Q ss_pred --HHHHHHHHHhhhhhc-----CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCCh-hHHhHHHHHHHHHHhh
Q 005686 90 --NQQYIKSELLPCLGA-----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICED 161 (683)
Q Consensus 90 --~~~~i~~~Ll~~l~~-----~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~-~~r~~al~~l~~l~~~ 161 (683)
.+..||+.++..+.. .++.||++++.+++.+++.+++..||++++.+.+.+++++. ......+++|..+.++
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EE 159 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDE 159 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHH
Confidence 999999999998853 46789999999999999999999999999999999987554 3344555666655565
Q ss_pred chhccccCC----------CCCC-cchhHhhHHHHHHhh----cCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHH
Q 005686 162 IPQVLDSDV----------PGLA-ECPINIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL 226 (683)
Q Consensus 162 ~~~~~~~~~----------~~~~-~~~~~~i~~~l~~~l----~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l 226 (683)
......... +..+ .+.+..+.+.++..+ ..+++.++..+++|+.+++.++|...... ..+++.+
T Consensus 160 v~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l 238 (980)
T 3ibv_A 160 IADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLL 238 (980)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHH
T ss_pred HHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHH
Confidence 433210000 0000 011223344444444 34788999999999999999987554322 3455655
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHhhC----------------------------------------------------cc
Q 005686 227 FLLSNDPSAEVRKLVCAAFNLLIEVR----------------------------------------------------PS 254 (683)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~l~~~~----------------------------------------------------~~ 254 (683)
+..+.+ +++|..+++||..++... +.
T Consensus 239 ~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~ 316 (980)
T 3ibv_A 239 YSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPS 316 (980)
T ss_dssp HHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 555543 445555555544433211 10
Q ss_pred --------chhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc----CC---chhhHHhhhhhhHHHHHhhcccChh
Q 005686 255 --------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QL---PHENLKEFLPRLVPVLLSNMIYADD 319 (683)
Q Consensus 255 --------~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~----~~---~~~~~~~~l~~l~~~l~~~l~~~~~ 319 (683)
...+++..+++.++.++.++++++...+++||..+.+. +. ......+++.++++.++.++.+.++
T Consensus 317 ~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d 396 (980)
T 3ibv_A 317 ELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDES 396 (980)
T ss_dssp --CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence 11245667788888888888999999999999997754 11 2456779999999999999998664
Q ss_pred hhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchh----hhHHHHH
Q 005686 320 DESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP----TLMPVIQ 395 (683)
Q Consensus 320 d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~l~~~l~ 395 (683)
+ + |++ ++|++|++..-..|+.....++.++...++.++. .+.+.+.
T Consensus 397 ~-~-~~~----------------------------~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~ 446 (980)
T 3ibv_A 397 Q-E-WDD----------------------------DPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLS 446 (980)
T ss_dssp C-C-CCC----------------------------CSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred c-c-ccc----------------------------ccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3 1 211 0011122222347777774444444444455566 5666666
Q ss_pred HHHc---cCCCCChhhHHHHHHHHHHHHhcchhhh------hhhHHHHHHHHhhccC-----CCChhHHHHHHHHHHHHH
Q 005686 396 AKLS---ASGDEAWKDREAAVLALGAIAEGCIKGL------YPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFS 461 (683)
Q Consensus 396 ~~l~---~~~~~~~~~r~aal~~l~~l~~~~~~~~------~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~ 461 (683)
+.+. +.+ |+.+++++++++.+++++.... .++++.+++.+...++ ++||.||.++++++|+++
T Consensus 447 ~~l~~~~~~~---W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys 523 (980)
T 3ibv_A 447 TAATLSPENS---WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYA 523 (980)
T ss_dssp HHTTSCHHHH---HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTG
T ss_pred HHhcccCCCC---HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6663 345 9999999999999999985311 2455566666666644 899999999999999999
Q ss_pred HHHHhhhCCCcchhhHHHHHHHHHH--HhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh----h--
Q 005686 462 KFIVQDIGHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY----Q-- 533 (683)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~l~~--~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~----~-- 533 (683)
+++.. ..++++++++.++. .+.+++++||.+|+.++.++|+.|+..+.||++.|++.+...+... +
T Consensus 524 ~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~ 597 (980)
T 3ibv_A 524 SFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDM 597 (980)
T ss_dssp GGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC-
T ss_pred HHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcc
Confidence 99973 56899999999999 9998899999999999999999999999999999999887776621 0
Q ss_pred ---------------HhHHHHHHHHHHHHHHHhcc-ccCchhHHHhhhHHHHHHHhcCCC---CC-c---chhhHHhHHH
Q 005686 534 ---------------RRNLRIVYDAIGTLADAVGF-ELNQPVYLDILMPPLIAKWQQLPN---SD-K---DLFPLLECFT 590 (683)
Q Consensus 534 ---------------~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~---~~-~---~~~~~~~~l~ 590 (683)
-+.+..+++++|.++...+. .-.+..|+..+++++++.+++... .. . .+...+.+++
T Consensus 598 ~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~ 677 (980)
T 3ibv_A 598 DAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIG 677 (980)
T ss_dssp -CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHH
T ss_pred cccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence 12456899999999998763 112357999999999888775311 11 1 1234566677
Q ss_pred HHHHHhcc---cccc---chHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcC
Q 005686 591 SIAQALGA---GFTQ---FAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFP 664 (683)
Q Consensus 591 ~l~~~~g~---~f~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p 664 (683)
.+++.+.. ...| ....+++.++.+|+.. ..+..+|+.+..++.+++..+|..+.||++.++.
T Consensus 678 ~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~------------~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~ 745 (980)
T 3ibv_A 678 NFAKGFPARGSEEVAWLASFNKASDEIFLILDRM------------GFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLIS 745 (980)
T ss_dssp HHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHS------------CCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHH
T ss_pred HHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHH
Confidence 77775532 1122 2233444444444432 1356799999999999999999999999999987
Q ss_pred Ccc
Q 005686 665 NLT 667 (683)
Q Consensus 665 ~l~ 667 (683)
.|.
T Consensus 746 ~ll 748 (980)
T 3ibv_A 746 ILL 748 (980)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 11
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=9.3e-38 Score=349.12 Aligned_cols=567 Identities=15% Similarity=0.234 Sum_probs=417.6
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHH
Q 005686 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (683)
Q Consensus 13 ~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~ 92 (683)
.++.+.+++..+++|+++ .|++|+++|++++++|++|..+..+|.. +.++++|++|++.|++.|.++|..++++.+.
T Consensus 26 Dv~~Le~lv~~ly~p~~~-~r~qA~~~L~q~q~sp~aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~ 102 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGA-QQRMAQEVLTHLKEHPDAWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPRNQCE 102 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHH-HHHHHHHHHHTSSCCSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred CHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHcCchHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHH
Confidence 467888999999999998 9999999999999999999999998875 7799999999999999999999999999999
Q ss_pred HHHHHHhhhhhc---------CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 005686 93 YIKSELLPCLGA---------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (683)
Q Consensus 93 ~i~~~Ll~~l~~---------~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 163 (683)
.||+.+++.+.. .++.++++++.+++.+++.++|..||++++.+.+.+++ ++..+..++.+|..+.++..
T Consensus 103 ~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 103 GIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999997742 35788999999999999999999999999999998865 45678889999999998854
Q ss_pred hc----ccc----CCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHH-HhhhCCC
Q 005686 164 QV----LDS----DVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL-FLLSNDP 233 (683)
Q Consensus 164 ~~----~~~----~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~ 233 (683)
.. +.. +.+..+...++.+++.+...+.+ .++.+...++++++.+++|+|-...-. ..+++.+ +..++
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~-~~ll~~L~~~~L~-- 258 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFE-TKLISTLIYKFLN-- 258 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHHHTSS--
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhcc-chHHHHHHHHhcC--
Confidence 32 100 00001112234555555555543 577888889999999998876432211 1234444 34332
Q ss_pred CHHHHHHHHHHHHHHHhhC----------------------------------------------------------ccc
Q 005686 234 SAEVRKLVCAAFNLLIEVR----------------------------------------------------------PSF 255 (683)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~----------------------------------------------------------~~~ 255 (683)
++.+|..+++||..++... ...
T Consensus 259 ~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~l 338 (1073)
T 3gjx_A 259 VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQL 338 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665554321 000
Q ss_pred ------hhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc---CC--------------------chhhHHhhhhhh
Q 005686 256 ------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QL--------------------PHENLKEFLPRL 306 (683)
Q Consensus 256 ------~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~---~~--------------------~~~~~~~~l~~l 306 (683)
+.+.+...+.+++.+...++.++...++++|..+.+. +. ......+++.++
T Consensus 339 Ie~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L 418 (1073)
T 3gjx_A 339 LEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKV 418 (1073)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHH
T ss_pred HhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHH
Confidence 1112222333344455567888889999999887654 10 112356788888
Q ss_pred HHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccc
Q 005686 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI 386 (683)
Q Consensus 307 ~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 386 (683)
...++..|...++.. ..+++++ +..|.+. .| .+.-+.++...+++..++...++.+
T Consensus 419 ~~vlI~~m~~P~ev~--i~e~e~g------e~~re~~-------------~d---~~~~~ly~~mrd~L~~lt~l~~~~~ 474 (1073)
T 3gjx_A 419 RLLMVSRMAKPEEVL--VVENDQG------EVVREFM-------------KD---TDSINLYKNMRETLVYLTHLDYVDT 474 (1073)
T ss_dssp HHHHHHTCCCSCCEE--EEECSSS------CEEEEEC-------------SS---CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCCCcccc--ccCcccc------hHHHHHH-------------hh---cchHHHHHHHHHHHHHHhcCCHHHH
Confidence 888888887765321 0001100 0111000 00 0112356667778877775556677
Q ss_pred hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhhccCCC-----ChhHHHHHHHHHHHH
Q 005686 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDK-----FPLIRSISCWTLSRF 460 (683)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~l 460 (683)
...+++.+.+.+..+ ..+|..++++++++|+++....+ .-.++++++++.+++....+ .+.++...++++|++
T Consensus 475 ~~i~~~~l~~~~~~~-~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 475 EIIMTKKLQNQVNGT-EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHHHTSC-CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhh
Confidence 777788887766542 33499999999999999876653 34578999999999887544 467788889999999
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccc--------hHHHHHHHHHHHHHHHHh
Q 005686 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKY 532 (683)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l--------~~~l~~i~~~L~~~l~~~ 532 (683)
++|+.. +..++..++..+++.+.++++.|+.+||.|+..+|+.|+..+ .||++.+++.+.....+.
T Consensus 554 ~~wl~~------h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l 627 (1073)
T 3gjx_A 554 PRFLRA------HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL 627 (1073)
T ss_dssp HHHHHH------CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC
T ss_pred HHHHHh------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc
Confidence 999974 689999999999999999999999999999999999998765 579999999999998888
Q ss_pred hHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCC---------CC----cchhhHHhHHHHHHHHhccc
Q 005686 533 QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN---------SD----KDLFPLLECFTSIAQALGAG 599 (683)
Q Consensus 533 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~----~~~~~~~~~l~~l~~~~g~~ 599 (683)
+.+.....++++|.++.+.+.....+.++..+|++....|+++.. .| +++..+++|...++.++|..
T Consensus 628 ~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 628 QPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh
Confidence 888888999999999999987654457999999999998886531 01 22356889999999999999
Q ss_pred cccchHHHHHHHHHHHHH
Q 005686 600 FTQFAQPVFQRCINIIQT 617 (683)
Q Consensus 600 f~~~~~~~~~~l~~~l~~ 617 (683)
|.+++..+++.++++.+.
T Consensus 708 f~~~~~~i~~~~l~~y~~ 725 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLNVYKC 725 (1073)
T ss_dssp GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988877654
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=5.8e-37 Score=362.61 Aligned_cols=600 Identities=14% Similarity=0.160 Sum_probs=456.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC----------ChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFP----------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p----------~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~ 84 (683)
.++.++|+.+.|||++ +|++|++.|.+..+.+ .++..++..+. +.++.+|..|+..|.+...
T Consensus 6 ~~l~~lL~~l~s~d~~-~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKD-FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHH-HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHhcCCCCHh-HHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH----
Confidence 4677888999999999 9999999998864432 23455666654 6789999999999876653
Q ss_pred cCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC---------ChHHHHHHHHHHhc-cCChhHHhHHHHH
Q 005686 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---------GWLELLQALVTCLD-SNDINHMEGAMDA 154 (683)
Q Consensus 85 ~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~---------~~~~l~~~l~~~l~-s~~~~~r~~al~~ 154 (683)
.+.++....+++.|+..+.++++.+|..++.+++.++...++. .|++++|.+...+. ++++.+|.+++.+
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 4667788899999999999999999999999999999876554 59999999999998 5889999999999
Q ss_pred HHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHh-HHHHHHHHHhhhCCC
Q 005686 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP 233 (683)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~ 233 (683)
+..+++..+..+. .+.+.+++.++..+.++++.+|..|+++++.++...++.+.+. ++.+++.+.. +.
T Consensus 158 l~~~~~~~~~~l~--------~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~---~~ 226 (1230)
T 1u6g_C 158 MADMLSRQGGLLV--------NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK---ND 226 (1230)
T ss_dssp HHHHHHHTCSSCT--------TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH---TC
T ss_pred HHHHHHHhHhHHH--------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc---CC
Confidence 9999987776543 3468899999999999999999999999999998876554333 3334444333 22
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhh
Q 005686 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (683)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~ 313 (683)
+..+|..+++++..++...+..+.+|++.+++.++..+.+.++++|..++.++..+++. ....+.+|++.++|.++..
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~--~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR--CPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--ChHHHHHhHHHHHHHHHHH
Confidence 34677889999999999988899999999999999999988999999999999998876 4456788999999999988
Q ss_pred cccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCC----CCccccccccHHHHHHHHHHHHHhhcCc---cc
Q 005686 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED----DDDDIVNVWNLRKCSAAALDVLSNVFGD---EI 386 (683)
Q Consensus 314 l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~ 386 (683)
+.+.+.. ..+++++. .+..+. . .+.++.++ ..++.+..|.+|.+|..+++.++...|+ ..
T Consensus 305 l~~d~~~--~~~~d~~~--~~~~~~-------~--~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~ 371 (1230)
T 1u6g_C 305 LTYDPNY--NYDDEDED--ENAMDA-------D--GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 371 (1230)
T ss_dssp CCCC-------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred hCCCCCC--CCcccccc--cccccc-------c--ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 8753321 00000000 000000 0 00000000 0012345799999999999999997775 45
Q ss_pred hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc-------------------hhhhhhhHHHHHHHHhhccCCCCh
Q 005686 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-------------------IKGLYPHLSEIVAFLIPLLDDKFP 447 (683)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-------------------~~~~~~~~~~l~~~l~~~l~d~~~ 447 (683)
++.++|.+...+.+.+ ..+|.+++.+++.+.... ...+.++++.+++.+.+.++|+++
T Consensus 372 ~~~l~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 372 YKTVSPALISRFKERE---ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HTTTHHHHHSTTSCSS---SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 6778888888887777 899999999998877632 234456778888988888999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCc--cHHHHHHHHHHHHHHHhcc-cchHHHHHHHHH
Q 005686 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK--RVQEAACSAFATLEEEAAE-ELAPRLEIILQH 524 (683)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~--~v~~~a~~al~~l~~~~~~-~l~~~l~~i~~~ 524 (683)
.+|.+++.+++.+++.++. ...++++.+++.++..+.|+++ .++..++.++..+++..+. .+.||++.+++.
T Consensus 449 ~vr~~~~~~L~~l~~~~~~-----~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~ 523 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPG-----ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPP 523 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTT-----TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHchh-----hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHH
Confidence 9999999999999988653 3467899999999999998765 8999999999999887654 488999999999
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHhcc-------ccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHh
Q 005686 525 LMMAFGKYQRRNLRIVYDAIGTLADAVGF-------ELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQAL 596 (683)
Q Consensus 525 L~~~l~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~ 596 (683)
+...+++.+..++..++.+++.++..+|. .+. +|++.++|.++..+... +.+.++ ..++.+++.++...
T Consensus 524 L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~--~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 524 VVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT--PYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH--HHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH--HHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Confidence 99988876666666788999999988876 443 69999999999888542 234444 46889999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhcc-chHHhHHhhcCCccccCCCCcc
Q 005686 597 GAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGS-GIESLVISLFPNLTWKSPKRKC 675 (683)
Q Consensus 597 g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~l~~i~p~l~~~~~~~~~ 675 (683)
|..+.++++.+++.+...+.+ ...|..++.+++.++...++ ++.+|++.++|.|...-.+.+.
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~----------------e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~ 664 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKN----------------EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQR 664 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTS----------------SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCH
T ss_pred CchhhhhHHHHHHHHHHHhcc----------------chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCH
Confidence 999999988888876655432 23677788888888765433 5789999999988654444443
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=4.4e-35 Score=333.43 Aligned_cols=582 Identities=14% Similarity=0.156 Sum_probs=453.0
Q ss_pred CCCCHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-hc-----CCC----hHHHHHHHhhhccCCCHHHHHHHHHHHH
Q 005686 7 WQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQY-SQ-----FPD----FNNYLAFILARAEGKSVEIRQAAGLLLK 76 (683)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~-~~-----~p~----~~~~l~~il~~~~~~~~~~R~~a~~~l~ 76 (683)
|..+|+....+..++....+.+.. +|..|.-.|++. .+ .++ +-..++..+. +.++.+|..++..+.
T Consensus 40 ~~~~p~~~~~l~~il~~~~~~~~~-vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~ 115 (852)
T 4fdd_A 40 LNQYPDFNNYLIFVLTKLKSEDEP-TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG---DSSPLIRATVGILIT 115 (852)
T ss_dssp HTTSHHHHHHHHHHHHTCTTSCHH-HHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTT---CSSHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHhccCCCChH-HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344566666777777765566777 999999999874 22 122 2234444443 567899999999998
Q ss_pred HHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc--------CChHHHHHHHHHHhccCChhHH
Q 005686 77 NNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--------AGWLELLQALVTCLDSNDINHM 148 (683)
Q Consensus 77 ~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~--------~~~~~l~~~l~~~l~s~~~~~r 148 (683)
......|.. ....+.+.|.+.+.++++.+|..+..+++.+++..+. ..++.+++.+.++++++++.+|
T Consensus 116 ~ia~~~~~~----~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR 191 (852)
T 4fdd_A 116 TIASKGELQ----NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIR 191 (852)
T ss_dssp HHHHHTTTT----TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHH
T ss_pred HHHHhcCcc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHH
Confidence 887664322 2233666777788888999999999999999876422 3378899999999999999999
Q ss_pred hHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHh
Q 005686 149 EGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL 228 (683)
Q Consensus 149 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~ 228 (683)
..++.++..++...+..+. ..+..+++.++..+.++++.+|..+++++..+++..|+.+.+++..+++.++.
T Consensus 192 ~~A~~aL~~~~~~~~~~~~--------~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~ 263 (852)
T 4fdd_A 192 SHAVACVNQFIISRTQALM--------LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263 (852)
T ss_dssp HHHHHHHHTTTTTTCHHHH--------TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHH--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 9999999877654433222 23578889999999999999999999999999998888888899999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHhh--CccchhhhHHHHHHHHHHhh-----------cC-----------CChHHHHHHhh
Q 005686 229 LSNDPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVN-----------KD-----------TDDDVALEACE 284 (683)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~l~~l~~~~~~~~-----------~~-----------~~~~vr~~a~~ 284 (683)
.+.+.++.+|..++++|..+++. ....+.+++..+++.++..+ .+ .++.+|..|..
T Consensus 264 ~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~ 343 (852)
T 4fdd_A 264 RTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAA 343 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHH
T ss_pred HccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHH
Confidence 99999999999999999998864 23456788888888887766 23 23357888999
Q ss_pred HHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccc
Q 005686 285 FWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (683)
Q Consensus 285 ~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~ 364 (683)
++..++.. ... ..++.+++.+...+.. .+
T Consensus 344 ~L~~la~~--~~~---~~~~~l~~~l~~~l~~----------------------------------------------~~ 372 (852)
T 4fdd_A 344 ALDVLANV--YRD---ELLPHILPLLKELLFH----------------------------------------------HE 372 (852)
T ss_dssp HHHHHHHH--HGG---GGHHHHHHHHHHHHTC----------------------------------------------SS
T ss_pred HHHHHHHh--ccH---HHHHHHHHHHHHHhcC----------------------------------------------CC
Confidence 99888775 111 2344555555444321 23
Q ss_pred ccHHHHHHHHHHHHHhhcCc---cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhh
Q 005686 365 WNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIP 440 (683)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~-~~~~~~~~l~~~l~~ 440 (683)
|.+|.++..+++.+++..++ ..++.+++.+...+++++ +.+|.+++++++.+++..+. ...+++..+++.++.
T Consensus 373 ~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~ 449 (852)
T 4fdd_A 373 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK---ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449 (852)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 78999999999999987764 456788899999999888 99999999999999987653 356789999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccc--hHHH
Q 005686 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--APRL 518 (683)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l--~~~l 518 (683)
.+.|+++.||..|+++++.+++..... ..+|++.+++.+...+++.+......+..+++.+++..+..+ .+|+
T Consensus 450 ~L~d~~~~vr~~a~~aL~~l~~~~~~~-----l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~ 524 (852)
T 4fdd_A 450 RILDSNKRVQEAACSAFATLEEEACTE-----LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHGGG-----GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhHh-----hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH
Confidence 999999999999999999999988653 678999999999999987776677778899999998887665 3599
Q ss_pred HHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcC--------------CCCCcch
Q 005686 519 EIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------------PNSDKDL 582 (683)
Q Consensus 519 ~~i~~~L~~~l~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~ 582 (683)
+.+++.+++.++... +...+.++++++.++..+|..+. +|++.+++.++..+... ...+.+.
T Consensus 525 ~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~--~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~ 602 (852)
T 4fdd_A 525 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL--PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF 602 (852)
T ss_dssp HHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHH
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchH
Confidence 999999987765432 23345899999999999999875 79999988777665431 1113333
Q ss_pred -hhHHhHHHHHHHHhccccccch--HHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhH
Q 005686 583 -FPLLECFTSIAQALGAGFTQFA--QPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLV 659 (683)
Q Consensus 583 -~~~~~~l~~l~~~~g~~f~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l 659 (683)
..++++++.+++.+|..|.+|+ +.+++.++..+.+ ...++|..++.+++.++..+|..+.+|+
T Consensus 603 ~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~--------------~~~~vr~~a~~~l~~l~~~~~~~~~~~l 668 (852)
T 4fdd_A 603 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD--------------KMPEVRQSSFALLGDLTKACFQHVKPCI 668 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC--------------SSHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC--------------CChhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4578999999999999999997 6788877776642 2467999999999999999999999999
Q ss_pred HhhcCCccccCCCCcceecc
Q 005686 660 ISLFPNLTWKSPKRKCILTN 679 (683)
Q Consensus 660 ~~i~p~l~~~~~~~~~~~~~ 679 (683)
+.++|.|...-...+.+|++
T Consensus 669 ~~~lp~l~~~l~~~~~~v~~ 688 (852)
T 4fdd_A 669 ADFMPILGTNLNPEFISVCN 688 (852)
T ss_dssp HHHHHHHHHTCCTTSHHHHH
T ss_pred HHHHHHHHHHcCccchHHHH
Confidence 99999886554444444443
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.1e-32 Score=313.42 Aligned_cols=571 Identities=13% Similarity=0.153 Sum_probs=447.9
Q ss_pred CHHhHHHHHH-HHHhhcCCCCHHHHHHHHHHHHHHhc-------CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHH
Q 005686 10 QEQGFNEICR-LLEQQISPSSTADKSQIWQQLQQYSQ-------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT 81 (683)
Q Consensus 10 ~~~~~~~l~~-~l~~~~s~~~~~~r~~A~~~L~~~~~-------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~ 81 (683)
+++....+.+ ++..+.+++.. +|+++.+.+..+.. .|++++.|...+.+ +.++.+|..|...++.....
T Consensus 89 ~~~~~~~ik~~ll~~l~~~~~~-vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~--~~~~~~r~~al~~l~~l~~~ 165 (861)
T 2bpt_A 89 SPEAKNQIKTNALTALVSIEPR-IANAAAQLIAAIADIELPHGAWPELMKIMVDNTGA--EQPENVKRASLLALGYMCES 165 (861)
T ss_dssp CHHHHHHHHHHHHHHHTCSSHH-HHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHc
Confidence 3444455543 44444456767 99999999988532 34455666665542 22889999998888766653
Q ss_pred hhcc-C--CHhHHHHHHHHHhhhhhcC--ChHHHHHHHHHHHHHHhhcC-----cCChHHHHHHHHHHhccCChhHHhHH
Q 005686 82 AYKS-M--SPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGG-----IAGWLELLQALVTCLDSNDINHMEGA 151 (683)
Q Consensus 82 ~w~~-l--~~~~~~~i~~~Ll~~l~~~--~~~vr~~~~~~l~~i~~~~~-----~~~~~~l~~~l~~~l~s~~~~~r~~a 151 (683)
+.. . -......+.+.+...+.++ ++.||..+..+++.++.... ...|+.+++.+.+.+.++++.+|..+
T Consensus 166 -~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a 244 (861)
T 2bpt_A 166 -ADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAA 244 (861)
T ss_dssp -SSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred -CChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 321 1 2345677778888888776 89999999999998764321 12367789999999999999999999
Q ss_pred HHHHHHHHhhchhccccCCCCCCcchhH-hhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc-----------------h
Q 005686 152 MDALSKICEDIPQVLDSDVPGLAECPIN-IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-----------------S 213 (683)
Q Consensus 152 l~~l~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~-----------------~ 213 (683)
+.++..+++..+..+. .++. .+++.+...+.+.+..+|..++.++..++.... .
T Consensus 245 ~~~l~~l~~~~~~~~~--------~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 245 FGCLCKIMSKYYTFMK--------PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp HHHHHHHHHHHGGGCH--------HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 9999999998876544 3456 888888999999999999999999988876531 1
Q ss_pred hhHHhHHHHHHHHHhhhCC-------CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHH
Q 005686 214 ALFVSMDQYLQGLFLLSND-------PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (683)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l 286 (683)
...+.+..+++.++..+.+ .++.+|..+..+|..++...+.. .++.+++.+...+.+.++.+|..|+.++
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l 393 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---ILEPVLEFVEQNITADNWRNREAAVMAF 393 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HHHHHHHHHHHHcCCCChhHHHHHHHHH
Confidence 2334556778888776653 23579999999999998876643 4567778888888888999999999999
Q ss_pred HHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccccc
Q 005686 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (683)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~ 366 (683)
+.+++.. ....+.++++.+++.++..+.+. ++.
T Consensus 394 ~~i~~~~-~~~~~~~~l~~il~~l~~~l~d~----------------------------------------------~~~ 426 (861)
T 2bpt_A 394 GSIMDGP-DKVQRTYYVHQALPSILNLMNDQ----------------------------------------------SLQ 426 (861)
T ss_dssp HHTSSSS-CHHHHHHHHHHHHHHHHHGGGCS----------------------------------------------CHH
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHHHHHcCCC----------------------------------------------cHH
Confidence 9998752 13567788889999887766421 235
Q ss_pred HHHHHHHHHHHHHhhcCc-----cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch----hhhhhhHHHHHHH
Q 005686 367 LRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI----KGLYPHLSEIVAF 437 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~----~~~~~~~~~l~~~ 437 (683)
+|..+..+++.++..++. ..++.++|.+.+.+.+ + +.+|.+++.+++.+++.+. ..+.+|++.+++.
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~ 502 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-H---PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDG 502 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-C---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-C---hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 899999999999988753 4577888988888865 4 8999999999999998764 5577999999999
Q ss_pred HhhccC--CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccC---------------CccHHHHHH
Q 005686 438 LIPLLD--DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT---------------NKRVQEAAC 500 (683)
Q Consensus 438 l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~---------------~~~v~~~a~ 500 (683)
+++.+. |.++.||..++.+++.++...+. ...+++..+++.+++.+.+. ...+|..++
T Consensus 503 L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~-----~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 577 (861)
T 2bpt_A 503 LIGAANRIDNEFNARASAFSALTTMVEYATD-----TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL 577 (861)
T ss_dssp HHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG-----GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcchHHHHHHHHHHHHHHHHcch-----hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence 999997 44589999999999999988754 35678888888888777632 356888999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCC
Q 005686 501 SAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD 579 (683)
Q Consensus 501 ~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 579 (683)
.+|+.+++..+..+.||++.+++.+...++.... ..+..++.+++.++...|..+. +|++.++|.+...+.. ++
T Consensus 578 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~~---~~ 652 (861)
T 2bpt_A 578 TVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE--KYLETFSPYLLKALNQ---VD 652 (861)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHHHC---TT
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHhcc---cc
Confidence 9999999999999999999999999999987755 6677899999999999998885 7999999999998853 23
Q ss_pred cch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHh
Q 005686 580 KDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESL 658 (683)
Q Consensus 580 ~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 658 (683)
.++ ..++++++.++..+|..|.+|++.+++.+++.+.+. ..+.++|..++.+++.++..+|+.|.+|
T Consensus 653 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~------------~~~~~vr~~~~~~l~~l~~~~~~~~~~~ 720 (861)
T 2bpt_A 653 SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP------------NARRELKPAVLSVFGDIASNIGADFIPY 720 (861)
T ss_dssp SHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT------------TCCTTHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc------------cccHhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 344 468899999999999999999999999988877631 0246799999999999999999999999
Q ss_pred HHhhcCCccc
Q 005686 659 VISLFPNLTW 668 (683)
Q Consensus 659 l~~i~p~l~~ 668 (683)
++.++|.|..
T Consensus 721 l~~~l~~l~~ 730 (861)
T 2bpt_A 721 LNDIMALCVA 730 (861)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988853
No 15
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=317.85 Aligned_cols=528 Identities=15% Similarity=0.202 Sum_probs=377.6
Q ss_pred CHHhHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCC
Q 005686 10 QEQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (683)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~--~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~ 87 (683)
.++..+++.+++..+++| +++ .|++|+++|++++++|++|..+..+|. +.+.++.+|++|++.||+.|.++|..++
T Consensus 6 ~~~~~~~l~~~l~~~~~p~~~~~-~r~~Ae~~L~~~~~~p~~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 6 VNALCEQLVKAVTVMMDPNSTQR-YRLEALKFCEEFKEKCPICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHH-HHHHHHHHHHHHHHHCTTHHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 356788899999999998 555 799999999999999988888888776 3377999999999999999999999999
Q ss_pred HhHHHHHHHHHhhhhhc-------CChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHh
Q 005686 88 PSNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICE 160 (683)
Q Consensus 88 ~~~~~~i~~~Ll~~l~~-------~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~ 160 (683)
++.+..||+.+++.+.+ .++.||++++.+++.|++.++++.||++++.+.+.+++ ++..++.++.+|..+++
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 99999999999998752 46899999999999999999999999999999999876 56778999999999998
Q ss_pred hchhccc--cC----CCCCCcchhHhhHHHHHHhhcC-------------------CCHHHHHHHHHHHHHHHhccchhh
Q 005686 161 DIPQVLD--SD----VPGLAECPINIFLPRLLQFFQS-------------------PHTSLRKLSLGSVNQFIMLMPSAL 215 (683)
Q Consensus 161 ~~~~~~~--~~----~~~~~~~~~~~i~~~l~~~l~~-------------------~~~~vr~~a~~~l~~~~~~~~~~~ 215 (683)
+....-. .. ....+...+..+++.+.+.+.+ ++..++..+++++..++.+.|..+
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~ 242 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence 7543200 00 0000011233555555555533 234577788888887777766332
Q ss_pred H-HhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhC------------------------------------------
Q 005686 216 F-VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR------------------------------------------ 252 (683)
Q Consensus 216 ~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------------------------------------------ 252 (683)
. ..-..+++.++..+.+ +++|..+++||..++...
T Consensus 243 i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k 320 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK 320 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred HHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence 1 1101233333333321 233344444443333221
Q ss_pred -------------cc--------chhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCC--chhhHHhhhhhhHHH
Q 005686 253 -------------PS--------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPV 309 (683)
Q Consensus 253 -------------~~--------~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~ 309 (683)
.. ...+++..++++++.++.+++..+...+++||..+.+... ....+.+++.++++.
T Consensus 321 ~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~v 400 (1204)
T 3a6p_A 321 RLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRA 400 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 00 1123445666677777778888889999999998877631 234567899999999
Q ss_pred H---HhhcccChhhh---hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC
Q 005686 310 L---LSNMIYADDDE---SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG 383 (683)
Q Consensus 310 l---~~~l~~~~~d~---~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~ 383 (683)
+ +..+.+.+++. ..|..+ +.|++++++...|+.|+.....+..++...+
T Consensus 401 l~~~l~k~~yp~~~~~~~~~~~~~-------------------------D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 401 SMTNLVKMGFPSKTDSPSCEYSRF-------------------------DFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHSCCCCSSCCSSTHHHHHHH-------------------------HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhcCccccCCcchhhhhc-------------------------ccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 8 77777655321 112111 1111222234567899999999999999998
Q ss_pred ccchhhhHHHHHHHHccC----------------------CCCChhhHHHHHHHHHHHHhcchhhh-hhh-----HHHHH
Q 005686 384 DEILPTLMPVIQAKLSAS----------------------GDEAWKDREAAVLALGAIAEGCIKGL-YPH-----LSEIV 435 (683)
Q Consensus 384 ~~~~~~l~~~l~~~l~~~----------------------~~~~~~~r~aal~~l~~l~~~~~~~~-~~~-----~~~l~ 435 (683)
...++.+.+.+.+.+.+. .+..|...++....+..+.+++.... .++ +++++
T Consensus 456 ~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll 535 (1204)
T 3a6p_A 456 KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELL 535 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 877777777776555431 01227778888888888887773322 122 34455
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhcc------------CCccHHHHHHHHH
Q 005686 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD------------TNKRVQEAACSAF 503 (683)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d------------~~~~v~~~a~~al 503 (683)
+.++. ++..+|.+|..++.++|.++.++. ....+++++++.++..+.+ .+..+|.+|+.++
T Consensus 536 ~~ll~-~~~~~p~l~~~~i~~l~~l~~~~~------~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al 608 (1204)
T 3a6p_A 536 QMVLN-FDTKDPLILSCVLTNVSALFPFVT------YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSI 608 (1204)
T ss_dssp HHHHH-CCCSCHHHHHHHHHHHHHHGGGGG------TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCChHHHHHHHHHHHHHHHHHh------cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHH
Confidence 54332 134689999999999999999886 3568999999999998876 2347999999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhc
Q 005686 504 ATLEEEAAEELAPRLEIILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (683)
Q Consensus 504 ~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 574 (683)
..+++.+++.+.||++.|...+..++.+.+ ...+...+++++.++..+++....+.|+..+++++++.|.+
T Consensus 609 ~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 609 IKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999887554 55666788899888655554443457899999999988874
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=8.7e-32 Score=318.40 Aligned_cols=539 Identities=13% Similarity=0.131 Sum_probs=421.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~ 141 (683)
+.++.+|..|..-|.+.+......+++.....+...+++.+.++++.+|..++.+++.++...++..++.+++.+...+.
T Consensus 17 s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~ 96 (1230)
T 1u6g_C 17 SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML 96 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 77999999999888887766555566677788888999999999999999999999999987666788999999999999
Q ss_pred cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhccchhhHHhHH
Q 005686 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (683)
Q Consensus 142 s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 220 (683)
++++.+|.++..+++.++...+..... ........+.++|.+++.+. ++++.+|..|+.++..++...++.+.++++
T Consensus 97 d~~~~vR~~a~~~L~~i~~~l~~~~~~--~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~ 174 (1230)
T 1u6g_C 97 SDKEQLRDISSIGLKTVIGELPPASSG--SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP 174 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCcccc--cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 989899999999999999877643100 00012357889999999998 488999999999999999877776777888
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccch-hhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhH
Q 005686 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (683)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 299 (683)
.+++.++..+.+++..+|..++.++..++...+..+ ...++.+++.+.. +.+..+|..++++|+.+++. ....+
T Consensus 175 ~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~---~~~~~~r~~a~~~l~~l~~~--~~~~~ 249 (1230)
T 1u6g_C 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK---NDSMSTTRTYIQCIAAISRQ--AGHRI 249 (1230)
T ss_dssp HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH---TCSSCSCTTHHHHHHHHHHH--SSGGG
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHHHH--hHHHH
Confidence 999999999999999999999999999998765433 2334444444332 22345788889999999876 34467
Q ss_pred HhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 005686 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (683)
Q Consensus 300 ~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~ 379 (683)
.++++.+++.++..+.+.+ ..+|..+..+++.++
T Consensus 250 ~~~l~~l~~~ll~~l~d~~----------------------------------------------~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 250 GEYLEKIIPLVVKFCNVDD----------------------------------------------DELREYCIQAFESFV 283 (1230)
T ss_dssp TTSCTTHHHHHHHHHSSCC----------------------------------------------TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC----------------------------------------------HHHHHHHHHHHHHHH
Confidence 8899999999987765211 137889999999999
Q ss_pred hhcCcc---chhhhHHHHHHHHcc----------------------------------CCCCChhhHHHHHHHHHHHHhc
Q 005686 380 NVFGDE---ILPTLMPVIQAKLSA----------------------------------SGDEAWKDREAAVLALGAIAEG 422 (683)
Q Consensus 380 ~~~~~~---~~~~l~~~l~~~l~~----------------------------------~~~~~~~~r~aal~~l~~l~~~ 422 (683)
+.+++. .++.++|.+.+.+.. .++..|++|.+|+.+++.++..
T Consensus 284 ~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 284 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred HHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 988875 455666666544421 0122499999999999999986
Q ss_pred chhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhh----C----------CCcchhhHHHHHHHHHHHh
Q 005686 423 CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI----G----------HQNGREQFEKVLMGLLKRI 488 (683)
Q Consensus 423 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~----------~~~~~~~~~~~l~~l~~~l 488 (683)
.++.+.++++.++|.+...+.|.++.||..++.+++.+........ + ......+++.+++.+.+.+
T Consensus 364 ~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l 443 (1230)
T 1u6g_C 364 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQM 443 (1230)
T ss_dssp CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHh
Confidence 6666788999999999999999999999999999998887553100 0 0012456777888888889
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHHHhccccCchhHHHhhhH
Q 005686 489 LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLADAVGFELNQPVYLDILMP 566 (683)
Q Consensus 489 ~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 566 (683)
+++++.+|..++.+++.+++.++..+.+|++.+++.+...+.+... ..+..++.+++.++...|++.+. +|++.++|
T Consensus 444 ~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~-~~l~~llp 522 (1230)
T 1u6g_C 444 KEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFH-PHVQALVP 522 (1230)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGH-HHHTTTHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHH-hHHHHHHH
Confidence 9999999999999999999998888889999999999999987643 45567888888888777766333 69999999
Q ss_pred HHHHHHhcCCCCCcch-hhHHhHHHHHHHHhcc-------ccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHH
Q 005686 567 PLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-------GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVV 638 (683)
Q Consensus 567 ~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~-------~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 638 (683)
.+...+.. ....+ ..++++++.+++.+|. .+.||++.+++.+++.+... ..+.++|.
T Consensus 523 ~L~~~l~d---~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~------------d~~~~vr~ 587 (1230)
T 1u6g_C 523 PVVACVGD---PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA------------DIDQEVKE 587 (1230)
T ss_dssp HHHHHHTC---SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS------------SSCHHHHH
T ss_pred HHHHHHcc---cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc------------CCCHHHHH
Confidence 99886653 22233 3578899999999887 78899999999988877421 13567999
Q ss_pred HHHHHHHHHHHHhccchHHhHHhhcCCcccc
Q 005686 639 CCLDLLSGLAEGLGSGIESLVISLFPNLTWK 669 (683)
Q Consensus 639 ~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~~ 669 (683)
.|+.+++.++...|+.+.+|++.++|.|...
T Consensus 588 ~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~ 618 (1230)
T 1u6g_C 588 RAISCMGQIICNLGDNLGSDLPNTLQIFLER 618 (1230)
T ss_dssp HHHHHHHHHHHHTGGGCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhhhHHHHHHHHHHH
Confidence 9999999999999999989999988887543
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=8.4e-32 Score=294.74 Aligned_cols=557 Identities=12% Similarity=0.073 Sum_probs=416.6
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--CC-ChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCC-H
Q 005686 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ--FP-DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS-P 88 (683)
Q Consensus 13 ~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~--~p-~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~-~ 88 (683)
.+..+..++..+.++|.+ +|..|.+.|..+.. .| ..+..++..|....+.++++|..++..|.+.... +. +
T Consensus 8 ~~~~i~~l~~~l~s~~~~-~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~----~~~~ 82 (588)
T 1b3u_A 8 SLYPIAVLIDELRNEDVQ-LRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL----VGGP 82 (588)
T ss_dssp SSHHHHHHHHHTTCSCHH-HHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGG----GTSG
T ss_pred CcCcHHHHHHHhhcccHH-HHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc----cCcH
Confidence 456678888899899999 99999999988543 22 1223333333321245779999998888643321 11 2
Q ss_pred hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccc
Q 005686 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (683)
Q Consensus 89 ~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~-~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~ 167 (683)
+....+...|...+.++++.+|..++.+++.++...++ ..++.+++.+.++..++++..|..+..+++.+....+..
T Consensus 83 ~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~-- 160 (588)
T 1b3u_A 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-- 160 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--
Confidence 23344555555566788999999999999999987643 345667888888888888999999999999988766532
Q ss_pred cCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q 005686 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (683)
Q Consensus 168 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (683)
..+.++|.+...+.|+++.||..|+++++.++...+... ....+++.+...++|+++.+|..++.+|..
T Consensus 161 ---------~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~ 229 (588)
T 1b3u_A 161 ---------VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRLLAVEACVN 229 (588)
T ss_dssp ---------HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHTTHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 247789999999999999999999999999998776432 234568888888899999999999999999
Q ss_pred HHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhc
Q 005686 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (683)
Q Consensus 248 l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~ 327 (683)
++...+.. .+.+.+++.+.....+.++.+|..+++.++.++.... . ..+...+++.+...+.+.
T Consensus 230 l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~~l~d~---------- 293 (588)
T 1b3u_A 230 IAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG-P---EITKTDLVPAFQNLMKDC---------- 293 (588)
T ss_dssp HHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC-H---HHHHHTHHHHHHHHHTCS----------
T ss_pred HHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC-c---ccchhHHHHHHHHHhCCC----------
Confidence 98876542 2345567777777888999999999999999876511 1 123455666665554321
Q ss_pred ccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc-----chhhhHHHHHHHHccCC
Q 005686 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-----ILPTLMPVIQAKLSASG 402 (683)
Q Consensus 328 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~l~~~l~~~l~~~~ 402 (683)
+|.+|..+..+++.++..++.. ..+.++|.+...+++++
T Consensus 294 ------------------------------------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~ 337 (588)
T 1b3u_A 294 ------------------------------------EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN 337 (588)
T ss_dssp ------------------------------------SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC
T ss_pred ------------------------------------cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC
Confidence 1358999999999999998764 46789999999999888
Q ss_pred CCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHH
Q 005686 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (683)
Q Consensus 403 ~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 482 (683)
|.+|.+++.+++.++..+++.. ..+.++|.+...++|+++.||..++.+++.+.+.++. ..+.+.++|
T Consensus 338 ---~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-------~~~~~~~lp 405 (588)
T 1b3u_A 338 ---QHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-------RQLSQSLLP 405 (588)
T ss_dssp ---HHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-------HHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-------HHHHHHHHH
Confidence 9999999999999988665422 3466788899999999999999999999999887642 245678889
Q ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHH
Q 005686 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD 562 (683)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 562 (683)
.+...+.|++..+|..++.+++.+++.++... +.+.+++.+...+.+....++..+..+++.++...|+. .+.+
T Consensus 406 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~ 479 (588)
T 1b3u_A 406 AIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE----WAHA 479 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHH
Confidence 99999999899999999999999999887543 23456777777777766677889999999999998865 3677
Q ss_pred hhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHH
Q 005686 563 ILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCL 641 (683)
Q Consensus 563 ~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~ 641 (683)
.++|.+...+. +.+..+ ..++.+++.++..+|..+ |.+.++|.+++.+.+ .++++|..++
T Consensus 480 ~llp~l~~~~~---~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d--------------~~~~Vr~~a~ 540 (588)
T 1b3u_A 480 TIIPKVLAMSG---DPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGD--------------PVANVRFNVA 540 (588)
T ss_dssp HTHHHHHHTTT---CSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGC--------------SCHHHHHHHH
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCC--------------CCchHHHHHH
Confidence 88887765332 223333 457889999999888753 667777777665532 3567999999
Q ss_pred HHHHHHHHHhccchHHhHHhhcCCccccCCCCcceec
Q 005686 642 DLLSGLAEGLGSGIESLVISLFPNLTWKSPKRKCILT 678 (683)
Q Consensus 642 ~~l~~l~~~~~~~~~~~l~~i~p~l~~~~~~~~~~~~ 678 (683)
.+++.++..+|..+.. +.++|.|.....++|..|+
T Consensus 541 ~~l~~l~~~~~~~~~~--~~~~p~l~~l~~d~d~~vr 575 (588)
T 1b3u_A 541 KSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVK 575 (588)
T ss_dssp HHHHHHGGGSCHHHHH--HHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHhchhhhH--HHHHHHHHHHcCCCchhHH
Confidence 9999999998876532 4555666444445554443
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=8.9e-31 Score=286.61 Aligned_cols=534 Identities=16% Similarity=0.117 Sum_probs=402.7
Q ss_pred HhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc---CCChHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHhhccCC
Q 005686 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (683)
Q Consensus 12 ~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~---~p~~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~w~~l~ 87 (683)
....++...|....+++.+ +|..+.+.|..+.. .++++..++.+|... .+.++.+|..|+..|++.... ++
T Consensus 45 ~~~~~l~~~L~~~~d~~~~-vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~----~~ 119 (588)
T 1b3u_A 45 RTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE----HS 119 (588)
T ss_dssp HHHHTHHHHHHHTCCCCHH-HHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT----SC
T ss_pred HHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH----CC
Confidence 3455677888777777777 99999999987642 233333333333211 156899999999888776533 33
Q ss_pred Hh-HHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc
Q 005686 88 PS-NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (683)
Q Consensus 88 ~~-~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~ 166 (683)
++ .+..+.+.+.....+++..+|..++.+++.++...+...++.+++.+.+.++++++.+|..++.+++.+++..+..
T Consensus 120 ~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~- 198 (588)
T 1b3u_A 120 PSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD- 198 (588)
T ss_dssp HHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-
Confidence 32 3344555555555677889999999999999887666678999999999999999999999999999999877642
Q ss_pred ccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Q 005686 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (683)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~ 246 (683)
.....++|.+...++|+++.+|..|+.++..+....++. ...+.+++.+.....|+++.+|..++.+|.
T Consensus 199 ---------~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~ 267 (588)
T 1b3u_A 199 ---------NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFT 267 (588)
T ss_dssp ---------HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHH
T ss_pred ---------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 235778999999999999999999999999998876643 123345777777888999999999999999
Q ss_pred HHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhh
Q 005686 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEA 326 (683)
Q Consensus 247 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~ 326 (683)
.++...+.. .+.+.+++.+...++++++.+|..|...+..+++.-.......++++.++|.+...+.+
T Consensus 268 ~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d---------- 335 (588)
T 1b3u_A 268 ELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD---------- 335 (588)
T ss_dssp HHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC----------
T ss_pred HHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC----------
Confidence 998754332 24456788888888999999999999999998876211111225666777776544321
Q ss_pred cccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCC
Q 005686 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEA 405 (683)
Q Consensus 327 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~ 405 (683)
.+|.+|..+..+++.++..+|. ...+.++|.+...+++++
T Consensus 336 ------------------------------------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~--- 376 (588)
T 1b3u_A 336 ------------------------------------ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDEC--- 376 (588)
T ss_dssp ------------------------------------SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSC---
T ss_pred ------------------------------------CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCc---
Confidence 2367999999999999998887 345788999999999887
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (683)
+.+|.+++.+++.+....+.. .+.+.++|.+...+.|.++.+|..++.+++.++..++.. .+.+.+++.+.
T Consensus 377 ~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-------~~~~~l~~~l~ 447 (588)
T 1b3u_A 377 PEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE-------FFDEKLNSLCM 447 (588)
T ss_dssp HHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG-------GCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH-------HHHHHHHHHHH
Confidence 999999999999988765421 245668888888899999999999999999999877532 23356889999
Q ss_pred HHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhh
Q 005686 486 KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILM 565 (683)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 565 (683)
..+.|+++.||..|+.+++.+++..+.. .+.+.+++.+.....+.+...+..++.+++.++..+|.. .|.+.++
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~ 521 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHML 521 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHH
Confidence 9999999999999999999999988764 356777777776666555666778999999999998865 4888899
Q ss_pred HHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHH
Q 005686 566 PPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLL 644 (683)
Q Consensus 566 ~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 644 (683)
|.+...+.. .++++ ..++.+++.++..+|..+.. +.++|.+..+++ +.+.++|..|..++
T Consensus 522 ~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~p~l~~l~~--------------d~d~~vr~~a~~al 582 (588)
T 1b3u_A 522 PTVLRMAGD---PVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQ--------------DQDVDVKYFAQEAL 582 (588)
T ss_dssp HHHHHGGGC---SCHHHHHHHHHHHHHHGGGSCHHHHH--HHHHHHHHHHTT--------------CSSHHHHHHHHHHH
T ss_pred HHHHhhCCC---CCchHHHHHHHHHHHHHHHhchhhhH--HHHHHHHHHHcC--------------CCchhHHHHHHHHH
Confidence 988776542 34445 46889999998888875422 445554443221 14678999998887
Q ss_pred HHH
Q 005686 645 SGL 647 (683)
Q Consensus 645 ~~l 647 (683)
+.+
T Consensus 583 ~~l 585 (588)
T 1b3u_A 583 TVL 585 (588)
T ss_dssp HHT
T ss_pred HHh
Confidence 764
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=4.2e-29 Score=286.68 Aligned_cols=585 Identities=17% Similarity=0.117 Sum_probs=437.0
Q ss_pred HHHHHHHHhhcC-C--CCHHHHHHHHHHHHHHhc----C--C-----ChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH
Q 005686 15 NEICRLLEQQIS-P--SSTADKSQIWQQLQQYSQ----F--P-----DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR 80 (683)
Q Consensus 15 ~~l~~~l~~~~s-~--~~~~~r~~A~~~L~~~~~----~--p-----~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~ 80 (683)
..+...+...+. + +.+ +|..|.+.|..+.. . . .+++.+...+. +.++.+|..++..|...+.
T Consensus 171 ~~ll~~l~~~l~~~~~~~~-vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~---~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNN-VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ---CPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHH-HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHH
Confidence 444444444443 3 355 99999999987432 1 1 13333444332 5678999999999998888
Q ss_pred HhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-------------------Cc-C----ChHHHHHHH
Q 005686 81 TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-------------------GI-A----GWLELLQAL 136 (683)
Q Consensus 81 ~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-------------------~~-~----~~~~l~~~l 136 (683)
..+..+.+.....+.+.++..+.+.++.+|..+...+..+++.. .. . ....+++.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 326 (876)
T 1qgr_A 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH
Confidence 77666554433356667777777888999999998888887642 00 1 125677888
Q ss_pred HHHhc-------cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 137 VTCLD-------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 137 ~~~l~-------s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
++.+. +.++.+|.++..++..++...++. .++.+++.+.+.+.++++.+|.+|+.+++.+..
T Consensus 327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~-----------~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----------IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-----------GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh-----------hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 77774 346789999999999999887642 357888999999999999999999999999988
Q ss_pred ccc-hhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccc--hhhhHHHHHHHHHHhhcCCChHHHHHHhhHH
Q 005686 210 LMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF--LEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (683)
Q Consensus 210 ~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l 286 (683)
..+ +.+.+++..+++.++..++|+++.+|..++.++..+++..+.. ..++++.+++.++..+.+. +.+|..++.++
T Consensus 396 ~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al 474 (876)
T 1qgr_A 396 GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAF 474 (876)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 765 5566778889999999999999999999999999999887654 3578999999999888775 88999999998
Q ss_pred HHhhccCC------------chhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCC
Q 005686 287 HSYFEAQL------------PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENP 354 (683)
Q Consensus 287 ~~l~~~~~------------~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 354 (683)
..+++... ....+.||++.+++.++..+...+.
T Consensus 475 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~----------------------------------- 519 (876)
T 1qgr_A 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG----------------------------------- 519 (876)
T ss_dssp HHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS-----------------------------------
T ss_pred HHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc-----------------------------------
Confidence 88876511 1234678899999998877653210
Q ss_pred CCCCccccccccHHHHHHHHHHHHHhhcCccc---hhhhHHHHHHHHccC--------CCCC----hhhHHHHHHHHHHH
Q 005686 355 EDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI---LPTLMPVIQAKLSAS--------GDEA----WKDREAAVLALGAI 419 (683)
Q Consensus 355 ~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~--------~~~~----~~~r~aal~~l~~l 419 (683)
...++|..+.++++.++...|... ++.+++.+.+.+.+. .+.. ...|..++.+++.+
T Consensus 520 --------~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l 591 (876)
T 1qgr_A 520 --------HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591 (876)
T ss_dssp --------CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred --------chhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHH
Confidence 113588889999999999988643 345566665555421 0000 23577889999999
Q ss_pred Hhcch-hhhhhhHHHHHHHHhhccCCCC--hhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccC-CccH
Q 005686 420 AEGCI-KGLYPHLSEIVAFLIPLLDDKF--PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRV 495 (683)
Q Consensus 420 ~~~~~-~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~-~~~v 495 (683)
+...+ +.+.++++.+++.++..+++.+ +.+|..++.+++.++...+. ...+|++.+++.+...+.+. ++.+
T Consensus 592 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~v 666 (876)
T 1qgr_A 592 LRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG-----EFLKYMEAFKPFLGIGLKNYAEYQV 666 (876)
T ss_dssp HTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG-----GGGGGHHHHHHHHHHHHHHCTTHHH
T ss_pred HHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHcCcchHHH
Confidence 99888 8889999999999999998764 58999999999999988764 36789999999999999987 7899
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh--hHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHh
Q 005686 496 QEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (683)
Q Consensus 496 ~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 573 (683)
|..|+.+++.++..++..+.||++.+++.+...+... +...+..++.+++.++..+|.++. +|++.++|.+...+.
T Consensus 667 r~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~--~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 667 CLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK--KYLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG--GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHH--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999863 345667899999999999999885 699999999887765
Q ss_pred cCCC-CCc-------ch-hhHHhHHHHHHHHhcc----------ccccchHHHHHHHHHHHHHHHHHhhCCcccCCCC-C
Q 005686 574 QLPN-SDK-------DL-FPLLECFTSIAQALGA----------GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQY-D 633 (683)
Q Consensus 574 ~~~~-~~~-------~~-~~~~~~l~~l~~~~g~----------~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~ 633 (683)
...+ ++. .+ ..++++++.++..+|. .+.||++.+++.+.....+ +. +
T Consensus 745 ~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~~~ 811 (876)
T 1qgr_A 745 AQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD-------------EDHT 811 (876)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC-------------SCCC
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcC-------------CCCC
Confidence 3210 111 22 2467888888888764 5778888888655443321 11 4
Q ss_pred chHHHHHHHHHHHHHHHhcc-chHHh-HHhhcCCccc-cCCCCcceec
Q 005686 634 KEFVVCCLDLLSGLAEGLGS-GIESL-VISLFPNLTW-KSPKRKCILT 678 (683)
Q Consensus 634 ~~~~~~a~~~l~~l~~~~~~-~~~~~-l~~i~p~l~~-~~~~~~~~~~ 678 (683)
.++|..|+.+++.++...|. .+.+| .+.++|.|.. +-..++..|+
T Consensus 812 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r 859 (876)
T 1qgr_A 812 DGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAK 859 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHH
Confidence 57899999999999999999 88888 4556655533 3333343333
No 20
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.90 E-value=2.6e-20 Score=213.80 Aligned_cols=596 Identities=10% Similarity=0.113 Sum_probs=367.1
Q ss_pred CCCHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-hc----------CC-C----hHHHHHHHhhhccCCCHHHHHHH
Q 005686 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQY-SQ----------FP-D----FNNYLAFILARAEGKSVEIRQAA 71 (683)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~-~~----------~p-~----~~~~l~~il~~~~~~~~~~R~~a 71 (683)
+.+|+....+.+++.. .+.+.+ +|..|...|++. .+ -| + +-..++..+.+ .+..+|..+
T Consensus 31 ~~~p~~~~~L~~il~~-~~~~~~-vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l 105 (960)
T 1wa5_C 31 ETQDGFGLTLLHVIAS-TNLPLS-TRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS---LPNNLQVQI 105 (960)
T ss_dssp HTSTTHHHHHHHHHHC-TTSCHH-HHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHH
T ss_pred hcCCCHHHHHHHHHhc-CCCCHH-HHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHH
Confidence 3445555556666642 123556 999999999873 21 11 1 12355666653 348899999
Q ss_pred HHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcC---c--CChHH-------HHHHHHH-
Q 005686 72 GLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---I--AGWLE-------LLQALVT- 138 (683)
Q Consensus 72 ~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~---~--~~~~~-------l~~~l~~- 138 (683)
+..+.......|. +....+.+.|++.+.+++...+..+..++..+++... . ..+++ +++.+.+
T Consensus 106 ~~~ia~ia~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~ 181 (960)
T 1wa5_C 106 GEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNL 181 (960)
T ss_dssp HHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 9998877765443 1223366778888877777778888888998887531 1 11221 2222222
Q ss_pred ------HhccCCh---hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC------C---------H
Q 005686 139 ------CLDSNDI---NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP------H---------T 194 (683)
Q Consensus 139 ------~l~s~~~---~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~------~---------~ 194 (683)
.++++.. ..+ .++.++..+++.+......+.+..+...+..+++.+.+.+... + .
T Consensus 182 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~ 260 (960)
T 1wa5_C 182 LKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLI 260 (960)
T ss_dssp HHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHH
T ss_pred HHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHH
Confidence 2443322 122 2223322222222110000000001123456666666665321 1 3
Q ss_pred HHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhC-----CCCHHHHHHHHHHHHHHHhhCc--cchh--hhHHHHH-
Q 005686 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN-----DPSAEVRKLVCAAFNLLIEVRP--SFLE--PHLRNLF- 264 (683)
Q Consensus 195 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~~~~~~~~l~~l~~~~~--~~~~--~~l~~l~- 264 (683)
.+|+.+++++..+++..++.+.+++..+++.+++.+. ..++.++..+++.|..+++... ..+. +++..++
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~ 340 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE 340 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHH
Confidence 5789999999999988888788888888887777553 3457889999999998876432 4444 7888877
Q ss_pred HHHHHhhc-----------------------CCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhh
Q 005686 265 EYMLQVNK-----------------------DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (683)
Q Consensus 265 ~~~~~~~~-----------------------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~ 321 (683)
..++..+. +..+..|..|..++..++.. ..+ ..++.+++.+...+.....
T Consensus 341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~--~~~---~v~~~~l~~i~~~l~~~~~-- 413 (960)
T 1wa5_C 341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEK--NEV---LVTNIFLAHMKGFVDQYMS-- 413 (960)
T ss_dssp HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHH--CHH---HHHHHHHHHHHHHHHHHHC--
T ss_pred HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHH--cch---hHHHHHHHHHHHHHHHhcc--
Confidence 45544331 01124677888888888776 222 2233333333222221000
Q ss_pred hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc-----Cc-------cchhh
Q 005686 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-----GD-------EILPT 389 (683)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~-----~~-------~~~~~ 389 (683)
+...+|..|.+|..+++.++... |. .+.+.
T Consensus 414 --------------------------------------~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 414 --------------------------------------DPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred --------------------------------------CcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 01234889999999999998642 11 12222
Q ss_pred hHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHH----
Q 005686 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV---- 465 (683)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---- 465 (683)
+...+...+.++++..+.+|.++++++|.+++... .+++..+++.+++.+.|+++.||.+|++++.++++...
T Consensus 456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccc
Confidence 33444555666611129999999999999998653 35788899999999999999999999999999987421
Q ss_pred --hhhCCCcchhhHHHHHHHHHHHhccCC-----ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh----hH
Q 005686 466 --QDIGHQNGREQFEKVLMGLLKRILDTN-----KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY----QR 534 (683)
Q Consensus 466 --~~~~~~~~~~~~~~~l~~l~~~l~d~~-----~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~----~~ 534 (683)
.........+|++++++.|+..++... ......+..+|..+++..++.+.||++.+++.|...+... ++
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 000112467899999999999988641 1245688999999999999999999999999999988864 12
Q ss_pred hHH-HHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHH
Q 005686 535 RNL-RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCI 612 (683)
Q Consensus 535 ~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~ 612 (683)
... ..++++|+.++.+.+++.. .++.+.++|.+...+.+-. .+. -.+++.++.+.... ..|.+|+..+++.+.
T Consensus 613 ~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~---~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDI---QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHT
T ss_pred cHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhh---HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHc
Confidence 223 3689999999998665442 3688899998888887532 222 24666666666544 455555554444333
Q ss_pred ---------------HHHHHHHHHhhCC---------c-ccCCCCCchHHHHHHHHHHHHHHHhccc-hHHhHHhhcCCc
Q 005686 613 ---------------NIIQTQQLAKVDS---------V-AAGAQYDKEFVVCCLDLLSGLAEGLGSG-IESLVISLFPNL 666 (683)
Q Consensus 613 ---------------~~l~~~~~~~~~~---------~-~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~i~p~l 666 (683)
..|........+. . .... ..+.....++.+++.++..+|.. |.||++.+++.+
T Consensus 688 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l 766 (960)
T 1wa5_C 688 APNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLI-ASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLL 766 (960)
T ss_dssp SGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHH-TCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHH
T ss_pred CHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHh-CCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 2222111000000 0 0000 01112367899999999999999 999999999887
Q ss_pred c
Q 005686 667 T 667 (683)
Q Consensus 667 ~ 667 (683)
.
T Consensus 767 ~ 767 (960)
T 1wa5_C 767 L 767 (960)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.90 E-value=4.1e-21 Score=203.19 Aligned_cols=395 Identities=14% Similarity=0.147 Sum_probs=291.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcC--ChHHHHHHHHHHHHHHhhcCc-------CCh---
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGGI-------AGW--- 129 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~--~~~vr~~~~~~l~~i~~~~~~-------~~~--- 129 (683)
+.+..+|..|-..|++.-.. ........|+..+.+. +..+|..++..+..+++..+. ..|
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 12 SPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 56889999999888763221 2334455667767543 789999999999998864321 113
Q ss_pred -----HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCC--CHHHHHHHHH
Q 005686 130 -----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLG 202 (683)
Q Consensus 130 -----~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~--~~~vr~~a~~ 202 (683)
..+...++..+.++++.+ ..+..+++.++...... ...+.++|.+.+.+.++ ++.+|..++.
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~----------~~w~~ll~~L~~~l~~~~~~~~~r~~al~ 152 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV----------NQWPELIPQLVANVTNPNSTEHMKESTLE 152 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG----------TCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc----------cccHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 335566777788877777 88888898888764321 12467899999999998 9999999999
Q ss_pred HHHHHHhcc-chhhHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHhhCccchhhh--HHHHHHHHHHhhcCCChH
Q 005686 203 SVNQFIMLM-PSALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPH--LRNLFEYMLQVNKDTDDD 277 (683)
Q Consensus 203 ~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~l~~~~~~~~~~~~~~ 277 (683)
+++.+++.. +..+.++++.+++.+...+.++ +..+|..+++++..++......+... ...+++.+.....+.+++
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp HHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 999999765 5556677778899999988887 78999999999988765433222111 122455555567788899
Q ss_pred HHHHHhhHHHHhhccCCchhhHHhhhh-hhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCC
Q 005686 278 VALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (683)
Q Consensus 278 vr~~a~~~l~~l~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (683)
+|..+++++..+++. ....+.+++. .+++.++..+.+.++
T Consensus 233 vr~~~~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------------- 273 (462)
T 1ibr_B 233 VRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDID------------------------------------- 273 (462)
T ss_dssp HHHHHHHHHHHHHHH--CGGGCTTTTTTTHHHHHHHHHHCSSH-------------------------------------
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCch-------------------------------------
Confidence 999999999999876 4456677888 888877655532211
Q ss_pred CCccccccccHHHHHHHHHHHHHhhc------------------Cc--c----chhhhHHHHHHHHccC----CCCChhh
Q 005686 357 DDDDIVNVWNLRKCSAAALDVLSNVF------------------GD--E----ILPTLMPVIQAKLSAS----GDEAWKD 408 (683)
Q Consensus 357 dd~~~~~~~~~r~~a~~~l~~l~~~~------------------~~--~----~~~~l~~~l~~~l~~~----~~~~~~~ 408 (683)
.+|..+...+..++... .. . .++.++|.+.+.+.+. ++.+|..
T Consensus 274 ---------~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~ 344 (462)
T 1ibr_B 274 ---------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP 344 (462)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchH
Confidence 25666666666665542 00 1 1356777777777532 1234999
Q ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHh
Q 005686 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (683)
Q Consensus 409 r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l 488 (683)
|.+|..+++.++...++ ..++.+++.+...++++++.+|.+|+.++|.+++.+.. .....+++.++|.++..+
T Consensus 345 r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~----~~~~~~l~~~~~~l~~~l 417 (462)
T 1ibr_B 345 CKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP----SQLKPLVIQAMPTLIELM 417 (462)
T ss_dssp HHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT----TTTCTTTTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHHHh
Confidence 99999999999987763 55677899999999999999999999999999975431 134567788999999999
Q ss_pred ccCCccHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHH
Q 005686 489 LDTNKRVQEAACSAFATLEEEAAEEL--APRLEIILQHLMMAFG 530 (683)
Q Consensus 489 ~d~~~~v~~~a~~al~~l~~~~~~~l--~~~l~~i~~~L~~~l~ 530 (683)
+|+++.||..|+++|+.+++..+..+ .+|++.+++.|+..++
T Consensus 418 ~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988765 5899999998876553
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.86 E-value=6.5e-19 Score=185.50 Aligned_cols=392 Identities=10% Similarity=0.072 Sum_probs=280.2
Q ss_pred HHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCCh------HHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccc
Q 005686 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW------LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (683)
Q Consensus 95 ~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~------~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~ 167 (683)
.+.+++.+.++++.+|..++..+..++.......+ +.+++.+.+.++++ ++.+|..++.++..++....+...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34677778888999999999999998764322222 15788899999888 889999999999999875443211
Q ss_pred cCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH-HHHHHHHHhhhCC-CCHHHHHHHHHHH
Q 005686 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSND-PSAEVRKLVCAAF 245 (683)
Q Consensus 168 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~~~~~~l 245 (683)
. -.-...+|.+++.+.++++.+|..|+.+|+.+....+......+ ..+++.+...+.+ ++..+|..++.+|
T Consensus 102 ~-------~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 102 I-------VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp H-------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred H-------HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0 01146899999999999999999999999999876443211111 1357777887774 6889999999999
Q ss_pred HHHHhhC-ccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhh-hhhhHHHHHhhcccChhhhhh
Q 005686 246 NLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF-LPRLVPVLLSNMIYADDDESL 323 (683)
Q Consensus 246 ~~l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~~d~~~ 323 (683)
..++... +..-......+++.+...+.+.++.++..++.++..++... ....... -..+++.++..+...
T Consensus 175 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll~~~------ 246 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--NDKIQAVIDAGVCRRLVELLMHN------ 246 (450)
T ss_dssp HHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS--HHHHHHHHHTTTHHHHHHHTTCS------
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC--cHHHHHHHHcCcHHHHHHHHCCC------
Confidence 9999654 32222233556667777788888999999999999998752 1111111 124666666655421
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc---ch-hhhHHHHHHHHc
Q 005686 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE---IL-PTLMPVIQAKLS 399 (683)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~ 399 (683)
++.+|..+..++..++...+.. +. ..+++.+.+.+.
T Consensus 247 ----------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 286 (450)
T 2jdq_A 247 ----------------------------------------DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286 (450)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT
T ss_pred ----------------------------------------chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc
Confidence 1357888999999887754331 11 257888889998
Q ss_pred cCCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-
Q 005686 400 ASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF- 477 (683)
Q Consensus 400 ~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~- 477 (683)
+++ +.+|..|+.+++.++.+..+.....+ ..++|.++..+.+.++.||..|+++|+.++...... .....+
T Consensus 287 ~~~---~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~l~~ 359 (450)
T 2jdq_A 287 SPK---ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE----QIKYLVE 359 (450)
T ss_dssp CSS---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHH----HHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH----HHHHHHH
Confidence 887 99999999999999987655444444 257888999999999999999999999998753211 122222
Q ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcc-------cchHHHHHH-----HHHHHHHHHHhhHhHHHHHHHHHH
Q 005686 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAIG 545 (683)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-------~l~~~l~~i-----~~~L~~~l~~~~~~~~~~~~~~l~ 545 (683)
..+++.|+..+.+.++.++..|+.+|..+++.... .+.+|...+ ++.|..+..+.+......++.+|.
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 439 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 439 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35889999999998999999999999999986643 245666666 455555555444445556666665
Q ss_pred HHH
Q 005686 546 TLA 548 (683)
Q Consensus 546 ~l~ 548 (683)
.+.
T Consensus 440 ~~~ 442 (450)
T 2jdq_A 440 HYF 442 (450)
T ss_dssp HHH
T ss_pred HHC
Confidence 543
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.84 E-value=1.6e-18 Score=185.92 Aligned_cols=356 Identities=12% Similarity=0.096 Sum_probs=262.2
Q ss_pred HHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCCh-----HHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhcccc
Q 005686 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDS 168 (683)
Q Consensus 95 ~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~-----~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~ 168 (683)
...++..|.++++.+|..++..+..++.......+ .+++|.+.+++.++ ++.+|..++.+|+.++.........
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34567778888899999999999999875433333 24688999999887 8999999999999998754432110
Q ss_pred CCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q 005686 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (683)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (683)
-.-...+|.++..+.++++.+|..|+.+|+.++...+..-...+ ..+++.+..++.+++..++..++.+|..
T Consensus 169 -------~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 169 -------VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp -------HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred -------HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 01146788999999999999999999999999865432211111 1457888888888889999999999999
Q ss_pred HHhhC-ccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhh-hhHHHHHhhcccChhhhhhhh
Q 005686 248 LIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVE 325 (683)
Q Consensus 248 l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~d~~~~~ 325 (683)
++... +..-......+++.++..+.+.++.++..|+.++..++.. ........+. .+++.++..+...
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~-------- 311 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHE-------- 311 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCS--------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCC--------
Confidence 99765 3332334456777777788888999999999999999875 2222332332 5667776665421
Q ss_pred hcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cc-hhhhHHHHHHHHccC
Q 005686 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI-LPTLMPVIQAKLSAS 401 (683)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~l~~~l~~~l~~~ 401 (683)
.|.+|..+..++..++...+. .+ -..+++.+...+.++
T Consensus 312 --------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 353 (530)
T 1wa5_B 312 --------------------------------------STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 353 (530)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred --------------------------------------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC
Confidence 135788888898888764432 11 135788888999888
Q ss_pred CCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH--H
Q 005686 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--E 478 (683)
Q Consensus 402 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~ 478 (683)
+ |.+|..|+++|+.++.+..+.....+ ..++|.++..+.+.++.+|..|+++|+.++...... .....++ .
T Consensus 354 ~---~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~---~~~~~~l~~~ 427 (530)
T 1wa5_B 354 K---ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR---PDIIRYLVSQ 427 (530)
T ss_dssp C---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC---THHHHHHHHT
T ss_pred C---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHC
Confidence 7 99999999999999987665444433 247888888888899999999999999998764210 0011222 2
Q ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc
Q 005686 479 KVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (683)
Q Consensus 479 ~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (683)
.+++.|+..+.+.++.++..|+.+|..++....
T Consensus 428 ~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 428 GCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp TCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 478999999998899999999999999998764
No 24
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.83 E-value=9.3e-17 Score=185.32 Aligned_cols=552 Identities=10% Similarity=0.073 Sum_probs=341.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHh-----cCCChHHHHHHHhhhcc--C-CCHHHHHHHHHHHHHHHHH--hhc
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS-----QFPDFNNYLAFILARAE--G-KSVEIRQAAGLLLKNNLRT--AYK 84 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~-----~~p~~~~~l~~il~~~~--~-~~~~~R~~a~~~l~~~i~~--~w~ 84 (683)
+.+.+.+....+.... +|++....+..+. +.|+++..+...+.++. . .++..+..+..+|+..... .|.
T Consensus 85 ~~ll~~l~~~~~~~~~-vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 85 QKILESIVRFAGGPKI-VLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHHHHHTTSCHH-HHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 3455555554333456 9999999988853 23455555555554210 0 1455677777777655432 222
Q ss_pred cCCHhH-----------HHHHHHHHhhhhhc-CC-------hHHHHHHHHHHHHHHhh--cCcCChHHHHHHHHHHhc--
Q 005686 85 SMSPSN-----------QQYIKSELLPCLGA-AD-------RHIRSTVGTIVSVVVQL--GGIAGWLELLQALVTCLD-- 141 (683)
Q Consensus 85 ~l~~~~-----------~~~i~~~Ll~~l~~-~~-------~~vr~~~~~~l~~i~~~--~~~~~~~~l~~~l~~~l~-- 141 (683)
.... ...+.+.+...+.. .+ ..++..+..++...+.. .+......+++.+.. +.
T Consensus 164 --~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~ 240 (971)
T 2x1g_F 164 --TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHK 240 (971)
T ss_dssp --CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhh
Confidence 1111 12333333344432 12 26888888888887773 333355677887776 41
Q ss_pred --------------cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHH-------hhcCCCH---HHH
Q 005686 142 --------------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-------FFQSPHT---SLR 197 (683)
Q Consensus 142 --------------s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-------~l~~~~~---~vr 197 (683)
++++..|..++.++..++...... +. ...+..++|.++. ...+.+. ...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~ 313 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCH---NY----PKTAFVLIKMFLDSLSEITKTEWKRENDNEDII 313 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGG---GC----HHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCcccc---cc----HHHHHHHHHHHHHhHHHHHHHHhcccccchHHH
Confidence 145678999999999998753210 00 1234445554443 2244453 667
Q ss_pred HHHHHHHHHHHhccchhhH-----------HhHHHHHHHHHhhhCC-----CCHHHHHHHHHHHHHHHhhC---------
Q 005686 198 KLSLGSVNQFIMLMPSALF-----------VSMDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIEVR--------- 252 (683)
Q Consensus 198 ~~a~~~l~~~~~~~~~~~~-----------~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~--------- 252 (683)
...++.+..+++..+..+. +.+..+++.++..... .+++++..++..|..+++..
T Consensus 314 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~ 393 (971)
T 2x1g_F 314 VHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQK 393 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccch
Confidence 6777888777754333222 4556677777775532 46778899999998886621
Q ss_pred ---ccchhhhHHHHHHHHHHhhcCCC---------------hHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhc
Q 005686 253 ---PSFLEPHLRNLFEYMLQVNKDTD---------------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (683)
Q Consensus 253 ---~~~~~~~l~~l~~~~~~~~~~~~---------------~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l 314 (683)
...+.+++..+++.++..+.-++ .+.|..+.+++..++.. ... ..++.+++.+...+
T Consensus 394 ~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~--~~~---~~l~~~~~~l~~~l 468 (971)
T 2x1g_F 394 HKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDV--LND---YILEILAAMLDEAI 468 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTT--CTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHH--HhH---HHHHHHHHHHHHHH
Confidence 13446777778887776653211 13566677777777654 221 22233333332222
Q ss_pred ccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cchhhhH
Q 005686 315 IYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLM 391 (683)
Q Consensus 315 ~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~ 391 (683)
..... ...+|..+.++..+++.+++...+ ..++.++
T Consensus 469 ~~~~~-----------------------------------------~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~ 507 (971)
T 2x1g_F 469 ADLQR-----------------------------------------HPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLM 507 (971)
T ss_dssp HHHHH-----------------------------------------CTTCCHHHHHHHHHHHHTTTC------CHHHHHH
T ss_pred HhccC-----------------------------------------CCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 10000 013588899999999999888764 3455666
Q ss_pred HHHHHHHc-cCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC
Q 005686 392 PVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (683)
Q Consensus 392 ~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (683)
+.+..... +++ +.+|..++++++.+++...+. .++++.+++.++..+ | +.|+..|++++.++++.+...
T Consensus 508 ~~l~~l~~~d~~---~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~--- 577 (971)
T 2x1g_F 508 RVLAEIPYEKLN---VKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ--- 577 (971)
T ss_dssp HHHHHSCTTTSC---HHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH---
T ss_pred HHHHhcCccccC---HHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh---
Confidence 64433322 235 899999999999999866433 378899999999988 4 889999999999999987754
Q ss_pred CcchhhHHHHHHHHHHHhccC--CccHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHh------hH---hHHH
Q 005686 471 QNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKY------QR---RNLR 538 (683)
Q Consensus 471 ~~~~~~~~~~l~~l~~~l~d~--~~~v~~~a~~al~~l~~~~~-~~l~~~l~~i~~~L~~~l~~~------~~---~~~~ 538 (683)
..+|++.++..+...+..+ +...+..+..+++.++...+ +...+|+..+++.++..+... +. ....
T Consensus 578 --l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 655 (971)
T 2x1g_F 578 --LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTI 655 (971)
T ss_dssp --HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 5789999999999998863 46789999999999987654 566677777766666655532 11 1222
Q ss_pred HHHHHHHHHHHHhccc------------cCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchH
Q 005686 539 IVYDAIGTLADAVGFE------------LNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQ 605 (683)
Q Consensus 539 ~~~~~l~~l~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~ 605 (683)
..+++|+.++..++.. .. .+|.+.++|.+...+.... ++.++ ..++.+++.++..+|..|.||++
T Consensus 656 ~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~~~p~l~ 733 (971)
T 2x1g_F 656 FRLNMISTLFSSLNTDVDEQATDQPIVQPV-LLVMQRTMPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSSFQPMLQ 733 (971)
T ss_dssp HHHHHHHHHHHHHTC-------------CC-HHHHHTTHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC--CTHHH
T ss_pred HHHHHHHHHHhhcCCCcCcccccccCCCch-HHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhhccccHH
Confidence 5666777777766532 11 2689999998888877543 23333 57889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccc
Q 005686 606 PVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG 654 (683)
Q Consensus 606 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 654 (683)
.+++.++..+++. . . .+++.+++.++..+|.+
T Consensus 734 ~~~~~l~~~~~~~--------------~--~-~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 734 DLCLFIVASFQTR--------------C--C-APTLEISKTAIVMFFKD 765 (971)
T ss_dssp HHHHHHHHHCC----------------C--C-HHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHhcC--------------C--c-hHHHHHHHHHHHHhCCC
Confidence 9999877665431 1 1 23677788888877763
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.83 E-value=3e-18 Score=180.34 Aligned_cols=397 Identities=13% Similarity=0.093 Sum_probs=282.1
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc-cCCHhHHH-HHHHHHhhhhhcC-ChHHHHHHHHHHHHHHhhcCc
Q 005686 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK-SMSPSNQQ-YIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGI 126 (683)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~-~l~~~~~~-~i~~~Ll~~l~~~-~~~vr~~~~~~l~~i~~~~~~ 126 (683)
++.+++.+. +.++.+|..|+..|++.+...+. .+....+. .+.+.|++.+.++ ++.+|..++.+++.++.....
T Consensus 22 l~~l~~~l~---s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~ 98 (450)
T 2jdq_A 22 TSDMIEMIF---SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL 98 (450)
T ss_dssp CHHHHHHHH---SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 566777775 56889999999999988764332 11111222 5677788888877 899999999999999874311
Q ss_pred --CC--hHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHH
Q 005686 127 --AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSL 201 (683)
Q Consensus 127 --~~--~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~ 201 (683)
.. ..+.++.+.+.++++++.+|..++.+|+.++........ . -.-..+++.+...+.+ ++..+|..++
T Consensus 99 ~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~-~------~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD-Y------VLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH-H------HHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH-H------HHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 11 245789999999999999999999999999886543210 0 0113578899999985 7899999999
Q ss_pred HHHHHHHhcc-chhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHHhhcCCChHHH
Q 005686 202 GSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVA 279 (683)
Q Consensus 202 ~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~vr 279 (683)
.++..++... |..-...+..+++.+...+.++++.++..++.+|..++...+....... ..+++.++..+.+.++.++
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 9999998654 3222222345688888888888999999999999999876543322211 2356667777888899999
Q ss_pred HHHhhHHHHhhccCCchhhHHhhh-hhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCC
Q 005686 280 LEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (683)
Q Consensus 280 ~~a~~~l~~l~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd 358 (683)
..|+.++..++.. ........+ ..+++.++..+...
T Consensus 252 ~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~~----------------------------------------- 288 (450)
T 2jdq_A 252 SPALRAVGNIVTG--DDIQTQVILNCSALQSLLHLLSSP----------------------------------------- 288 (450)
T ss_dssp HHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHTTCS-----------------------------------------
T ss_pred HHHHHHHHHHhhC--ChHHHHHHHHCccHHHHHHHHcCC-----------------------------------------
Confidence 9999999999876 222222222 24666666655421
Q ss_pred ccccccccHHHHHHHHHHHHHhhcCc---cch-hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc-hhhhhhhHH-
Q 005686 359 DDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLS- 432 (683)
Q Consensus 359 ~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~-~~~~~~~~~- 432 (683)
.+.+|..+..+++.++....+ .+. ..++|.+.+.+.+++ +.+|..|+++++.++.+. ++.....+.
T Consensus 289 -----~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~l~~~ 360 (450)
T 2jdq_A 289 -----KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE---FRTRKEAAWAITNATSGGSAEQIKYLVEL 360 (450)
T ss_dssp -----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 135889999999998864332 122 367888888888888 999999999999998763 333333332
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhh--CCCcchhhHHHH-----HHHHHHHhccCCccHHHHHHHHHHH
Q 005686 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI--GHQNGREQFEKV-----LMGLLKRILDTNKRVQEAACSAFAT 505 (683)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~~-----l~~l~~~l~d~~~~v~~~a~~al~~ 505 (683)
.+++.++..+++.++.||..|+++|+.++....... +.....+|...+ ++.+.....+++..|+..|..+|.+
T Consensus 361 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp TCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 388999999999999999999999999998654310 000112444444 5667666667778899999988887
Q ss_pred HH
Q 005686 506 LE 507 (683)
Q Consensus 506 l~ 507 (683)
+.
T Consensus 441 ~~ 442 (450)
T 2jdq_A 441 YF 442 (450)
T ss_dssp HH
T ss_pred HC
Confidence 75
No 26
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.83 E-value=1.3e-16 Score=184.37 Aligned_cols=532 Identities=13% Similarity=0.105 Sum_probs=336.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHh------cCCChHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhhcc-C
Q 005686 16 EICRLLEQQISPSSTADKSQIWQQLQQYS------QFPDFNNYLAFILARAE--GKSVEIRQAAGLLLKNNLRTAYKS-M 86 (683)
Q Consensus 16 ~l~~~l~~~~s~~~~~~r~~A~~~L~~~~------~~p~~~~~l~~il~~~~--~~~~~~R~~a~~~l~~~i~~~w~~-l 86 (683)
.+.+.+....+.... +|++....+..+. +.|+++..+...+.++. ..++..+..+..+|+......... +
T Consensus 104 ~ll~~l~~~~~~~~~-ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~ 182 (963)
T 2x19_B 104 QLFTQITRFASGSKI-VLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRL 182 (963)
T ss_dssp HHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccC
Confidence 345555443223456 9999998888753 24666667766554200 025556766766666554321100 1
Q ss_pred C-----------HhHHHHHHHHHhhhhhcC--ChHHHHHHHHHHHHHHhhc-CcCChHHHHHHHHHHhccCChhHHhHHH
Q 005686 87 S-----------PSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAM 152 (683)
Q Consensus 87 ~-----------~~~~~~i~~~Ll~~l~~~--~~~vr~~~~~~l~~i~~~~-~~~~~~~l~~~l~~~l~s~~~~~r~~al 152 (683)
. ......+.+.+...+.+. +..++..+..++...+... ....++.+++.+.+++. ++..|..++
T Consensus 183 ~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~ 260 (963)
T 2x19_B 183 PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDSSV 260 (963)
T ss_dssp ---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHHHH
Confidence 0 122344555555555433 2246777777776655532 12245889999988884 567899999
Q ss_pred HHHHHHHhhchhccccCCCCCCcchhHhhHHHHHH-------hhcCCCHHHHHHHHHHHHHHHhccchhhH------HhH
Q 005686 153 DALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-------FFQSPHTSLRKLSLGSVNQFIMLMPSALF------VSM 219 (683)
Q Consensus 153 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-------~l~~~~~~vr~~a~~~l~~~~~~~~~~~~------~~~ 219 (683)
.++..++........ ...+..+++.++. .+.+.+.......++.+..+++..+..+. +.+
T Consensus 261 ~~l~~i~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 333 (963)
T 2x19_B 261 EAIVNAISQPDAQRY-------VNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF 333 (963)
T ss_dssp HHHHHHHTCTTGGGC-------HHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHcccccccC-------HHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH
Confidence 999999874321100 1223444444433 23445556666667777777654443332 445
Q ss_pred HHHHHHHHhhhCC-----CCHHHHHHHHHHHHHHHhhC-----------ccchhhhHHHHHHHHHHhhcCCCh-------
Q 005686 220 DQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIEVR-----------PSFLEPHLRNLFEYMLQVNKDTDD------- 276 (683)
Q Consensus 220 ~~~l~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~~------- 276 (683)
..+++.++....+ .++.++..++..|..+++.. ...+.+++..+++.++..+..+++
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~ 413 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWS 413 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSC
T ss_pred HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 5677777776654 35567788888888877621 234467777777777766532221
Q ss_pred --------HHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccC
Q 005686 277 --------DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (683)
Q Consensus 277 --------~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 348 (683)
+.|..+.+++..++.. ... ..++.+++.+...+..
T Consensus 414 ~de~~~~~~~r~~~~~~L~~~~~~--~~~---~~l~~~~~~l~~~l~~-------------------------------- 456 (963)
T 2x19_B 414 SDEKEQFRIYRVDISDTLMYVYEM--LGA---ELLSNLYDKLGRLLTS-------------------------------- 456 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HTH---HHHHHHHHHHHHHHHT--------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--ccH---HHHHHHHHHHHHHHHh--------------------------------
Confidence 1244455555555443 111 1222222222221110
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh
Q 005686 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK 425 (683)
Q Consensus 349 ~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~ 425 (683)
.. ...+|..+.++..+++.+++...+ ..++.+++.+.. +.+++ +.+|..++++++.+++....
T Consensus 457 -----~~-----~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~---~~vr~~~~~~l~~~~~~l~~ 522 (963)
T 2x19_B 457 -----SE-----EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISN---VQLADTVMFTIGALSEWLAD 522 (963)
T ss_dssp -----CC-----CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCS---HHHHHHHHHHHHHTHHHHHH
T ss_pred -----cC-----CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCc---HHHHHHHHHHHHHHHHHHHh
Confidence 00 013588899999999999988764 334444443322 23344 88999999999999886543
Q ss_pred hhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccC--CccHHHHHHHHH
Q 005686 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAF 503 (683)
Q Consensus 426 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~v~~~a~~al 503 (683)
. .++++.+++.++..+.+ +.|+..|+.++.++++.+.. ...+|++.++..+...+... +...+..+..++
T Consensus 523 ~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~-----~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai 594 (963)
T 2x19_B 523 H-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY-----DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQAL 594 (963)
T ss_dssp C-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG-----GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 2 36778888888888866 89999999999999988764 35789999999999888753 467899999999
Q ss_pred HHHHHHhc-ccchHHHHHHHHHHHHHHHHh-----hHh---HHHHHHHHHHHHHHHhccccC------------------
Q 005686 504 ATLEEEAA-EELAPRLEIILQHLMMAFGKY-----QRR---NLRIVYDAIGTLADAVGFELN------------------ 556 (683)
Q Consensus 504 ~~l~~~~~-~~l~~~l~~i~~~L~~~l~~~-----~~~---~~~~~~~~l~~l~~~~~~~~~------------------ 556 (683)
+.++...+ +...+|++.+++.+...++.. +.+ .....+++|+.++..++....
T Consensus 595 ~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (963)
T 2x19_B 595 GFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGP 674 (963)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCC
Confidence 99997775 678899999998888777642 111 223688999999988764220
Q ss_pred c--hhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 005686 557 Q--PVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQT 617 (683)
Q Consensus 557 ~--~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~ 617 (683)
. .+++..++|.+...+....+ +.++ ..++.+++.++..+|..|.||++++++.++..+..
T Consensus 675 ~~~~~~~~~~~~~~~~~l~~~~~-~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 737 (963)
T 2x19_B 675 NPVVVVLQQVFQLIQKVLSKWLN-DAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST 737 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc
Confidence 1 24788888888777765432 3333 46788899999999999999999999987776554
No 27
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.82 E-value=3.8e-17 Score=176.67 Aligned_cols=434 Identities=11% Similarity=0.083 Sum_probs=293.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh-c---CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHh
Q 005686 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYS-Q---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (683)
Q Consensus 14 ~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~-~---~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~ 89 (683)
+.++.+. +.+++.. .|+.+...+--+. . .+.....++.++. +.+..+|+.+...+.+.... .++
T Consensus 15 ~~~i~~~---L~~~~~~-~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~---s~~~~~Krl~yl~l~~~~~~-----~~e 82 (591)
T 2vgl_B 15 IFELKAE---LNNEKKE-KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQ---TDNLELKKLVYLYLMNYAKS-----QPD 82 (591)
T ss_dssp HHHHHHH---TTSSCHH-HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTS---SSCHHHHHHHHHHHHHHHHH-----SHH
T ss_pred HHHHHHH---HcCCCHH-HHHHHHHHHHHHHHCCCChHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccc-----Cch
Confidence 3444444 4467777 8888777776532 2 2234455566443 67899999999988776543 345
Q ss_pred HHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccC
Q 005686 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (683)
Q Consensus 90 ~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (683)
....+.+.+.+-+.++++.+|..+..+++.+ ..+..++.+++.+.+++.++++.+|..|+.++..+++..++.+.
T Consensus 83 ~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~-- 157 (591)
T 2vgl_B 83 MAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE-- 157 (591)
T ss_dssp HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH--
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc--
Confidence 5555567777788899999998776655555 45678899999999999999999999999999999985543211
Q ss_pred CCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchh-hHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 005686 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (683)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l 248 (683)
-..+++.+.+.+.|+++.|+..|+.++..+....|+. ........+..+++.+.+.++-.+..+++.+..+
T Consensus 158 --------~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 158 --------DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp --------HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred --------cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 1368899999999999999999999999998765533 2222334455555555556666666666666544
Q ss_pred HhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccC-CchhhHHhhhhhhHHHHHhhcccChhhhhhhhhc
Q 005686 249 IEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (683)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~-~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~ 327 (683)
.... ......+++.+...+++.++.|+..|+.++..+...- ...+.+.....++.+.++..+. ++
T Consensus 230 ~~~~----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d--------- 295 (591)
T 2vgl_B 230 NPKD----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GE--------- 295 (591)
T ss_dssp CCCS----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SC---------
T ss_pred CCCC----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CC---------
Confidence 4222 2344667788777888889999999999999986431 1223344445566665543322 11
Q ss_pred ccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChh
Q 005686 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWK 407 (683)
Q Consensus 328 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 407 (683)
.++|..+...+..+....++.+.+.+-.++ +..+.+ +.
T Consensus 296 -------------------------------------~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~--~~~~d~---~~ 333 (591)
T 2vgl_B 296 -------------------------------------PEVQYVALRNINLIVQKRPEILKQEIKVFF--VKYNDP---IY 333 (591)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHCCSTTTTCTTTTS--CCTTSC---HH
T ss_pred -------------------------------------ccHHHHHHHHHHHHHHhChHHHHHHHHhhe--eccCCh---HH
Confidence 147889999999988876653332222111 222344 88
Q ss_pred hHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHH
Q 005686 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (683)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 487 (683)
+|..++..+..++... .+..+++.+...+.+.+..+|..++++++.++..++ +....+++.+++.
T Consensus 334 Ir~~al~~L~~l~~~~------nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~---------~~~~~~v~~Ll~l 398 (591)
T 2vgl_B 334 VKLEKLDIMIRLASQA------NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE---------QSAERCVSTLLDL 398 (591)
T ss_dssp HHHHHHHHHHHTCCSS------THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCChh------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh---------hHHHHHHHHHHHH
Confidence 9999999888876532 345677778888888899999999999999987543 3446677888888
Q ss_pred hccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHH
Q 005686 488 ILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ-RRNLRIVYDAIGTL 547 (683)
Q Consensus 488 l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~-~~~~~~~~~~l~~l 547 (683)
+.+....++..+..++..+++..++.-.. ++..|...+.... ...+..++.++|..
T Consensus 399 l~~~~~~v~~e~i~~l~~ii~~~p~~~~~----~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 399 IQTKVNYVVQEAIVVIRDIFRKYPNKYES----IIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHSCSSCCT----THHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred HcccchHHHHHHHHHHHHHHHHCcchHHH----HHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 88888888888888998888776443222 2333344444322 23334455555544
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.82 E-value=4.5e-18 Score=183.88 Aligned_cols=438 Identities=16% Similarity=0.161 Sum_probs=303.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHH
Q 005686 19 RLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (683)
Q Consensus 19 ~~l~~~~s~~~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 96 (683)
++++.+.+++.. .|+.+.-.+..+.+ .|+......+.+..+ .+.++.+|..|...+.+. ..++..+.+..
T Consensus 53 ~vi~l~~s~~~~-~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i-------~~~~~~~~l~~ 124 (591)
T 2vgl_B 53 DVVNCMQTDNLE-LKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI-------RVDKITEYLCE 124 (591)
T ss_dssp HHHHTTSSSCHH-HHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC-------CSGGGHHHHHH
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------ChHHHHHHHHH
Confidence 444456678888 99999999998755 677654444444322 367899999887666432 35677788888
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChH--HHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc--cc---cC
Q 005686 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV--LD---SD 169 (683)
Q Consensus 97 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~--~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~--~~---~~ 169 (683)
.+..++.++++.||+.++.++..+++.. +..++ ++++.+.+++.++++.++.+|+.+|+.++...+.. +. ..
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 8889999999999999999999999964 55666 58999999999999999999999999998765421 00 00
Q ss_pred CCCCC-------------------------cchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc---chhhHHhHHH
Q 005686 170 VPGLA-------------------------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQ 221 (683)
Q Consensus 170 ~~~~~-------------------------~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~---~~~~~~~~~~ 221 (683)
+..++ ......+++.+...+++.++.|+..|++++..+.... ++.+......
T Consensus 204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~ 283 (591)
T 2vgl_B 204 INKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK 283 (591)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH
T ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 00000 0122456666777788888999999999998886543 2223333344
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHh
Q 005686 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301 (683)
Q Consensus 222 ~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 301 (683)
+.+.+..+. ++++++|..++..+..++...+..+.+++..++ +..+++..+|..|++++..++....
T Consensus 284 ~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-----~~~~d~~~Ir~~al~~L~~l~~~~n------- 350 (591)
T 2vgl_B 284 LAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFF-----VKYNDPIYVKLEKLDIMIRLASQAN------- 350 (591)
T ss_dssp THHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-----CCTTSCHHHHHHHHHHHHHTCCSST-------
T ss_pred HHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-----eccCChHHHHHHHHHHHHHHCChhh-------
Confidence 555555544 478999999999999999998888877665331 2234458899999999999886521
Q ss_pred hhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh
Q 005686 302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV 381 (683)
Q Consensus 302 ~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~ 381 (683)
+..+++.+..++... ++.+|..+..+++.++..
T Consensus 351 -v~~iv~~L~~~l~~~----------------------------------------------d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 351 -IAQVLAELKEYATEV----------------------------------------------DVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp -HHHHHHHHHHHTTSS----------------------------------------------CHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHhcC----------------------------------------------CHHHHHHHHHHHHHHHHh
Confidence 234455554444321 124788899999999988
Q ss_pred cCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC-CCChhHHHHHHHHHHHH
Q 005686 382 FGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRF 460 (683)
Q Consensus 382 ~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l 460 (683)
++. ....+++.+.+.+++.. ..++..++.++..+....++.. ..+++.+...+. +.++.+|.+++|++|++
T Consensus 384 ~~~-~~~~~v~~Ll~ll~~~~---~~v~~e~i~~l~~ii~~~p~~~----~~~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 384 VEQ-SAERCVSTLLDLIQTKV---NYVVQEAIVVIRDIFRKYPNKY----ESIIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp CHH-HHHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHSCSSC----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred Chh-HHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHCcchH----HHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 753 34577888888888877 7888888888888876554321 223555666675 46789999999999999
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HH-hhHhHHH
Q 005686 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF-GK-YQRRNLR 538 (683)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l-~~-~~~~~~~ 538 (683)
+..... ...++..+++.+.+.++.||..++.|+.++....++...+.+..+ +... .+ .+.+++.
T Consensus 456 ~~~~~~----------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~l----l~~~~~d~~d~evrd 521 (591)
T 2vgl_B 456 AERIDN----------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQV----LSLATQDSDNPDLRD 521 (591)
T ss_dssp CTTCTT----------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHH----HHHHHTTCCCHHHHH
T ss_pred cccccC----------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHH----HHHhhhcCCChHHHH
Confidence 876531 245666666666677889999999999998766554433433333 3332 22 2335555
Q ss_pred HHHHHHHHH
Q 005686 539 IVYDAIGTL 547 (683)
Q Consensus 539 ~~~~~l~~l 547 (683)
.+.+.+..+
T Consensus 522 RA~~y~~ll 530 (591)
T 2vgl_B 522 RGYIYWRLL 530 (591)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHH
Confidence 666555544
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.80 E-value=1.6e-17 Score=178.14 Aligned_cols=401 Identities=13% Similarity=0.101 Sum_probs=284.0
Q ss_pred CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHh-hccCCHhHHHHHHHHHhhhhhcC-ChHHHHHHHHHHHHHHhhc
Q 005686 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLG 124 (683)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~-w~~l~~~~~~~i~~~Ll~~l~~~-~~~vr~~~~~~l~~i~~~~ 124 (683)
.+.++.++..|. +.++.+|..|+..|++.+... -..+..-....+.+.|++.|.++ ++.+|..++.+++.++...
T Consensus 86 ~~~i~~lv~~L~---s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 86 QQELPQMTQQLN---SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp -CCHHHHHHHHS---CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 456777888776 457899999999998876432 01111112234566777788776 8999999999999998743
Q ss_pred C--cCCh--HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHH
Q 005686 125 G--IAGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLS 200 (683)
Q Consensus 125 ~--~~~~--~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a 200 (683)
. ...+ .+.++.+..++.++++.+|..++.+|+.++...+..-. . -....+++.++..+.+++..++..|
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~-~------~~~~~~l~~L~~ll~~~~~~v~~~a 235 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD-Y------VLQCNAMEPILGLFNSNKPSLIRTA 235 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH-H------HHHTTCHHHHHHGGGSCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH-H------HHHcCcHHHHHHHhccCCHHHHHHH
Confidence 1 1111 34578888888889999999999999999875433210 0 0124678999999999999999999
Q ss_pred HHHHHHHHhcc-chhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcCCChHH
Q 005686 201 LGSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDV 278 (683)
Q Consensus 201 ~~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~v 278 (683)
+.+|..++... +..-......+++.+..++.++++.++..++.+|..++...+......+. .+++.++..+.+.++.+
T Consensus 236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v 315 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 315 (530)
T ss_dssp HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhh
Confidence 99999998654 32222233456888888888889999999999999999776554443333 56677777888889999
Q ss_pred HHHHhhHHHHhhccCCchhhHHhhh-hhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCC
Q 005686 279 ALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (683)
Q Consensus 279 r~~a~~~l~~l~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~d 357 (683)
+..|+.++..++.. ........+ ..+++.++..+...
T Consensus 316 ~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~---------------------------------------- 353 (530)
T 1wa5_B 316 QTPALRAVGNIVTG--NDLQTQVVINAGVLPALRLLLSSP---------------------------------------- 353 (530)
T ss_dssp HHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCS----------------------------------------
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHcchHHHHHHHHcCC----------------------------------------
Confidence 99999999999865 222222222 25666666655421
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCcc---ch-hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh--hhhhhH
Q 005686 358 DDDIVNVWNLRKCSAAALDVLSNVFGDE---IL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK--GLYPHL 431 (683)
Q Consensus 358 d~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~--~~~~~~ 431 (683)
.+.+|..|..+|..++...++. ++ ..++|.+...+.+++ +.+|..|+++|+.++.+... ....++
T Consensus 354 ------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~~~l 424 (530)
T 1wa5_B 354 ------KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE---YKTKKEACWAISNASSGGLQRPDIIRYL 424 (530)
T ss_dssp ------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 1358899999999988644321 11 357788888888887 99999999999999876432 222333
Q ss_pred HH--HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhC--CCcchhhHHH-----HHHHHHHHhccCCccHHHHHHHH
Q 005686 432 SE--IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG--HQNGREQFEK-----VLMGLLKRILDTNKRVQEAACSA 502 (683)
Q Consensus 432 ~~--l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~-----~l~~l~~~l~d~~~~v~~~a~~a 502 (683)
.. +++.++..+.+.++.||..++++|..+......... .....++... .++.|.....++++.|+..|..+
T Consensus 425 ~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~i 504 (530)
T 1wa5_B 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504 (530)
T ss_dssp HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 23 788999999999999999999999999987653100 0001223222 36677777778888999999999
Q ss_pred HHHHHH
Q 005686 503 FATLEE 508 (683)
Q Consensus 503 l~~l~~ 508 (683)
|..+..
T Consensus 505 l~~~~~ 510 (530)
T 1wa5_B 505 IETYFG 510 (530)
T ss_dssp HHHHSS
T ss_pred HHHHCC
Confidence 987764
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.80 E-value=1e-16 Score=171.97 Aligned_cols=352 Identities=11% Similarity=0.104 Sum_probs=260.9
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCCh-----HHHHHHHHHHhccCC-hhHHhHHHHHHHHHHhhchhccccC
Q 005686 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVLDSD 169 (683)
Q Consensus 96 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~-----~~l~~~l~~~l~s~~-~~~r~~al~~l~~l~~~~~~~~~~~ 169 (683)
+.++..|.++++.+|..++..++.++........ .+++|.+.+++.+++ +.+|..++.+|+.++....+....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~- 155 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV- 155 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH-
Confidence 4567778888999999999999999876532222 245788899998876 899999999999999864432110
Q ss_pred CCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH--HHHHHHHhhh-CCCCHHHHHHHHHHHH
Q 005686 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLS-NDPSAEVRKLVCAAFN 246 (683)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~-~~~~~~~~~~~~~~l~ 246 (683)
-.-...+|.++..+.++++.+|..|+.+|+.++...+.. ...+. ..++.++..+ .+.+..++..++.+|.
T Consensus 156 ------~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 156 ------VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC-RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp ------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH-HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred ------HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh-HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 011358899999999999999999999999998654322 22221 3577788877 5678899999999999
Q ss_pred HHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhh-hhhHHHHHhhcccChhhhhhhh
Q 005686 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVE 325 (683)
Q Consensus 247 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~ 325 (683)
.++...+..-......+++.+...+.+.+++++..|+.++..++.. ........+ ..+++.++..+...+
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~------- 299 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPS------- 299 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSC-------
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCC-------
Confidence 9998765444445567778888888889999999999999999875 222222222 246666666654321
Q ss_pred hcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cc-hhhhHHHHHHHHccC
Q 005686 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI-LPTLMPVIQAKLSAS 401 (683)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~l~~~l~~~l~~~ 401 (683)
+.++..+..+|+.++...+. .+ -..+++.+...+.++
T Consensus 300 ---------------------------------------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 300 ---------------------------------------PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred ---------------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 24788888999888764432 11 135688888888887
Q ss_pred -CCCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH--
Q 005686 402 -GDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-- 477 (683)
Q Consensus 402 -~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-- 477 (683)
+ +.+|..|+++++.++.+..+.....+. .++|.++..+.+.++.+|..|+++|+.++..... ....++
T Consensus 341 ~~---~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~-----~~~~~l~~ 412 (528)
T 4b8j_A 341 LK---KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH-----DQIKYLVS 412 (528)
T ss_dssp CC---HHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH-----HHHHHHHH
T ss_pred Cc---HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH-----HHHHHHHH
Confidence 7 999999999999999865544333332 4788888888888999999999999999876211 122333
Q ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc
Q 005686 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (683)
Q Consensus 478 ~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (683)
..+++.|...+.+.++.++..++.+|..++....
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999899999999999999987653
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.78 E-value=6.6e-17 Score=173.49 Aligned_cols=359 Identities=15% Similarity=0.099 Sum_probs=259.9
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCC-HHHHHHHHHHHHHHHhc
Q 005686 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIML 210 (683)
Q Consensus 132 l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~vr~~a~~~l~~~~~~ 210 (683)
-++.+.+.+.++++..|..|+..|..++......... .-.-..++|.+++.+.+++ +.+|..|+.+|..+...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~------~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIE------EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHH------HHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHH------HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 3788888889999999999999999987654311100 0112468999999999987 99999999999999876
Q ss_pred cchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhh-cCCChHHHHHHhhHHH
Q 005686 211 MPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVN-KDTDDDVALEACEFWH 287 (683)
Q Consensus 211 ~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~-~~~~~~vr~~a~~~l~ 287 (683)
.+......+. ..++.|+.++.++++.++..++.+|..++...+..-...+. ..++.++..+ .+.+..++..++.++.
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4433222222 46888899999899999999999999998754432111111 3455666666 5678899999999999
Q ss_pred HhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccH
Q 005686 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (683)
Q Consensus 288 ~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~ 367 (683)
.++..... ........+++.++..+...+ +.+
T Consensus 229 ~L~~~~~~--~~~~~~~~~l~~L~~lL~~~~----------------------------------------------~~v 260 (528)
T 4b8j_A 229 NFCRGKPQ--PSFEQTRPALPALARLIHSND----------------------------------------------EEV 260 (528)
T ss_dssp HHHCSSSC--CCHHHHTTHHHHHHHHTTCCC----------------------------------------------HHH
T ss_pred HHHcCCCC--CcHHHHHHHHHHHHHHHCCCC----------------------------------------------HHH
Confidence 99886311 112334667777766654321 247
Q ss_pred HHHHHHHHHHHHhhcCcc---c-hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhcc
Q 005686 368 RKCSAAALDVLSNVFGDE---I-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLL 442 (683)
Q Consensus 368 r~~a~~~l~~l~~~~~~~---~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l 442 (683)
+..+..+|..++...+.. + -..+++.+.+.+.+++ +.+|..|+.+|+.++.+........+ ..+++.++..+
T Consensus 261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~---~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 337 (528)
T 4b8j_A 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS---PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL 337 (528)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC---hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH
Confidence 778888888887554321 1 2357888999999888 99999999999999987654333333 33688888888
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--
Q 005686 443 DDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL-- 518 (683)
Q Consensus 443 ~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l-- 518 (683)
.+. ++.+|..|+++|+.++...... ....+ ..+++.|+..+.+.++.++..|+++|++++.........++
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~-----~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQ-----IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHH-----HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHH-----HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888 9999999999999998632211 11112 35788888889888899999999999999987544444444
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhc
Q 005686 519 EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (683)
Q Consensus 519 ~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (683)
..+++.|+..+...+...+..++.+|..++...+
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567778888887777777889999999987654
No 32
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.76 E-value=1.2e-15 Score=176.76 Aligned_cols=569 Identities=12% Similarity=0.114 Sum_probs=328.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH-hc----CC-----ChHHHHHHHhhhcc-CC-----CHHHHHHHHHHHHHH
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQY-SQ----FP-----DFNNYLAFILARAE-GK-----SVEIRQAAGLLLKNN 78 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~-~~----~p-----~~~~~l~~il~~~~-~~-----~~~~R~~a~~~l~~~ 78 (683)
..+.++|.. +.+.. +|..|...|++. .+ -| .+-..++..+.+.. +. +..+|...+..+-..
T Consensus 51 ~~l~~iL~~--s~~~~-vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~I 127 (1049)
T 3m1i_C 51 QKADQILQF--STNPQ-SKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQI 127 (1049)
T ss_dssp GGHHHHHHH--CSCHH-HHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--CCCHH-HHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHH
Confidence 334445544 45666 999999999873 22 12 12335566555311 11 367888888888777
Q ss_pred HHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc--C-----------------cCChHHHHHHHHHH
Q 005686 79 LRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG--G-----------------IAGWLELLQALVTC 139 (683)
Q Consensus 79 i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~--~-----------------~~~~~~l~~~l~~~ 139 (683)
....|..-=+ .+.+.|++.+. .+...+..+..++..+.... . ....+.+++.+.+.
T Consensus 128 a~~~~p~~Wp----~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~ 202 (1049)
T 3m1i_C 128 LKQEWPQNWP----EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQV 202 (1049)
T ss_dssp HHHHTTTTCT----THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccch----HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765542112 23444455454 34444545555555554321 0 01234455555555
Q ss_pred hcc-CChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc-cc-----
Q 005686 140 LDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MP----- 212 (683)
Q Consensus 140 l~s-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~-~~----- 212 (683)
+.+ ++..++..++.++..++...+.... ....+++.+++.+. +++.+|..|++|+..++.. .+
T Consensus 203 l~~~~~~~~~~~aL~~l~~~l~wi~~~~~---------~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~ 272 (1049)
T 3m1i_C 203 LEQGSSSSLIVATLESLLRYLHWIPYRYI---------YETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDL 272 (1049)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTTTSCTHHH---------HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhCCHHHH---------hhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhh
Confidence 543 3456788888888776553331110 00123333332111 1344555555554444321 00
Q ss_pred ---------------------------------------------------------------hhhHHhHHHHHHHHHhh
Q 005686 213 ---------------------------------------------------------------SALFVSMDQYLQGLFLL 229 (683)
Q Consensus 213 ---------------------------------------------------------------~~~~~~~~~~l~~l~~~ 229 (683)
+...+.+..+++.++..
T Consensus 273 ~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~ 352 (1049)
T 3m1i_C 273 IKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQL 352 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 00122233445555555
Q ss_pred hCCCCHHHHHHHHHHHHHHHh------hCccchhhhHHHHHHHHHHhhcCC-------------------Ch---HHHHH
Q 005686 230 SNDPSAEVRKLVCAAFNLLIE------VRPSFLEPHLRNLFEYMLQVNKDT-------------------DD---DVALE 281 (683)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~~l~~l~~~~~~~~~~~-------------------~~---~vr~~ 281 (683)
...++.+++..+++.|..+++ .....+.+++..+++.++..+.-+ +. ..|..
T Consensus 353 ~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~ 432 (1049)
T 3m1i_C 353 SKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKS 432 (1049)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHH
Confidence 566778889999999988877 233556788888888877654211 00 22444
Q ss_pred HhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccc
Q 005686 282 ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (683)
Q Consensus 282 a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~ 361 (683)
+-+++..++.. .... .++.+.+.+-..+.. .
T Consensus 433 ~~~~L~~l~~~--~~~~---~l~~v~~~l~~~l~~--------------------------------------------~ 463 (1049)
T 3m1i_C 433 EREVLVYLTHL--NVID---TEEIMISKLARQIDG--------------------------------------------S 463 (1049)
T ss_dssp HHHHHHHHHHH--CHHH---HHHHHHHHHHHHHTS--------------------------------------------S
T ss_pred HHHHHHHHHcc--CHHH---HHHHHHHHHHHHhCC--------------------------------------------C
Confidence 55566666533 1111 122222222111110 1
Q ss_pred cccccHHHHHHHHHHHHHhhcCcc----chhhhHHHHHHHHc-----cCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH
Q 005686 362 VNVWNLRKCSAAALDVLSNVFGDE----ILPTLMPVIQAKLS-----ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS 432 (683)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~-----~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~ 432 (683)
..+|..+.++..+++.++..+++. .++.+++.+..... +++ +.+|..+++++|.+++..... .+++.
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~---~~v~~~~~~~lgry~~~~~~~-~~~l~ 539 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK---AVVASDIMYVVGQYPRFLKAH-WNFLR 539 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH---HHHHHHHHHHHHHCHHHHHHC-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch---HHHHHHHHHHHHHHHHHHHhH-HHHHH
Confidence 135888999999999988776542 25556665554322 123 455656889999888755432 46788
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhh---CCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Q 005686 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI---GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (683)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (683)
.+++.++..+.|+++.||..|++++.++++.+...+ .+....+|++.++..+...+.+.+..-......|++.++..
T Consensus 540 ~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999876531 11122488999999998888875555667788999999877
Q ss_pred hc--ccchHHHHHHHHHHHHHHHHh----h--------Hh---HHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHH
Q 005686 510 AA--EELAPRLEIILQHLMMAFGKY----Q--------RR---NLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKW 572 (683)
Q Consensus 510 ~~--~~l~~~l~~i~~~L~~~l~~~----~--------~~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 572 (683)
.+ +...+|+..+++.+...++.. . .+ .....+.+++.++.+.|..+. +++..+++.++..+
T Consensus 620 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~--p~~~~i~~~~l~~~ 697 (1049)
T 3m1i_C 620 ERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFY--PQLGHIYYNMLQLY 697 (1049)
T ss_dssp CCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHH
Confidence 65 346677777666655444321 0 11 123567788889999999886 68887776665544
Q ss_pred hcCC---------CCCcc--------hhh----HHhHHHHHHHHh---ccccccchHHHHHHHHHHHHHHHHHhhCCccc
Q 005686 573 QQLP---------NSDKD--------LFP----LLECFTSIAQAL---GAGFTQFAQPVFQRCINIIQTQQLAKVDSVAA 628 (683)
Q Consensus 573 ~~~~---------~~~~~--------~~~----~~~~l~~l~~~~---g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 628 (683)
+... .+... +.. +.+.+....... +..+.||+++++..++..+.+.. .
T Consensus 698 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~-~------- 769 (1049)
T 3m1i_C 698 RAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV-P------- 769 (1049)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC-G-------
T ss_pred HHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC-c-------
Confidence 3210 00000 001 112222222211 12345777777777766665421 0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCcccc
Q 005686 629 GAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLTWK 669 (683)
Q Consensus 629 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~~ 669 (683)
.. .+ ..++++++.++..+|+.+.+|++.+++.+..+
T Consensus 770 ~~-~~----~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~ 805 (1049)
T 3m1i_C 770 DA-RD----AEVLNCMTTVVEKVGHMIPQGVILILQSVFEC 805 (1049)
T ss_dssp GG-CC----THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHH
T ss_pred cc-cc----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 00 12 23588899999999999999999988777433
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.75 E-value=8.7e-15 Score=158.51 Aligned_cols=461 Identities=10% Similarity=0.003 Sum_probs=306.4
Q ss_pred CCHHHHHHHHHHHHHHhcCC-------ChHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHhhccCCHhH-HHHHHHHH
Q 005686 28 SSTADKSQIWQQLQQYSQFP-------DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSN-QQYIKSEL 98 (683)
Q Consensus 28 ~~~~~r~~A~~~L~~~~~~p-------~~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~-~~~i~~~L 98 (683)
..+ .|..|.-.|.+++++- .|-..+-+.+.+- ...+.+-+.-|+..+-+.+...|+.-..-. .+...+.+
T Consensus 217 ~~~-~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~l 295 (810)
T 3now_A 217 TGS-SSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMI 295 (810)
T ss_dssp CTT-HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHH
T ss_pred Chh-HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHH
Confidence 345 8999999999877532 2322222222210 144555555566666555543333211111 23556778
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHhhc-CcCC-hHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh-ccccCCCCCCc
Q 005686 99 LPCLGAADRHIRSTVGTIVSVVVQLG-GIAG-WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ-VLDSDVPGLAE 175 (683)
Q Consensus 99 l~~l~~~~~~vr~~~~~~l~~i~~~~-~~~~-~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~-~~~~~~~~~~~ 175 (683)
+..+.++++.++..+..+++.++... .... ...-++.|..++++++..+|..++.+|..+...... .-...+. +
T Consensus 296 i~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~---~ 372 (810)
T 3now_A 296 LAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG---D 372 (810)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSST---T
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchh---h
Confidence 88888999999999999999976542 1111 122248888999888888999898888887653321 1001110 1
Q ss_pred chhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhccchhhHHhH---HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHh
Q 005686 176 CPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSM---DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (683)
Q Consensus 176 ~~~~~i~~~l~~~l~~~--~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (683)
..+..+++.+.++|.++ +.++|..|+.+|..+....+ ....+ ..+++.|+.++.+++..+...+..+|..+..
T Consensus 373 g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~--vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE--CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp THHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH--HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH--HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 23567889999999988 88999999999999875422 11111 3578888888888888899999999999987
Q ss_pred hCcc----------------------------chhhhHH-----HHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchh
Q 005686 251 VRPS----------------------------FLEPHLR-----NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHE 297 (683)
Q Consensus 251 ~~~~----------------------------~~~~~l~-----~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 297 (683)
.+.. ....... ..++.++..+.+.++.++..|..++.+++..+....
T Consensus 451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~ 530 (810)
T 3now_A 451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRG 530 (810)
T ss_dssp CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4420 0110011 355677788888999999999999999986522111
Q ss_pred hHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 005686 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (683)
Q Consensus 298 ~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~ 377 (683)
.+- -...+|.|+..+..... ..+..|..+|..
T Consensus 531 ~Vv--~~Gaip~Lv~LL~s~~~----------------------------------------------~~k~~Aa~AL~n 562 (810)
T 3now_A 531 KVV--QEGGVKALLRMALEGTE----------------------------------------------KGKRHATQALAR 562 (810)
T ss_dssp HHH--HTTHHHHHHHHHHSSCH----------------------------------------------HHHHHHHHHHHH
T ss_pred HHH--HCCCHHHHHHHHccCCH----------------------------------------------HHHHHHHHHHHH
Confidence 111 12356666665543211 257788899998
Q ss_pred HHhhcCc-cch-----hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChhHH
Q 005686 378 LSNVFGD-EIL-----PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIR 450 (683)
Q Consensus 378 l~~~~~~-~~~-----~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~vr 450 (683)
++..... ..+ ...+|.+.+++.++. +...+..|+++|+.++.+..+.....+. ..+|.+...+.+.++.||
T Consensus 563 L~~~~~p~~~~~~~~~~~aIppLv~LL~~~~--~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq 640 (810)
T 3now_A 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDC--TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640 (810)
T ss_dssp HHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHH
T ss_pred HhcCCChhhhhcchhhhcHHHHHHHHhCCCC--cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHH
Confidence 8765432 211 236788888887542 1456678999999999875432222222 367888888889999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCcchhhH--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHH--HHHHHHH
Q 005686 451 SISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE--IILQHLM 526 (683)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~--~i~~~L~ 526 (683)
..|+++|+.++..-. ....+. ...++.|+..+..++..+|..|++||+.++.......+..+. ..++.|+
T Consensus 641 ~~A~~~L~NLa~~~~------~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv 714 (810)
T 3now_A 641 RAAAQCLCNLVMSED------VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILH 714 (810)
T ss_dssp HHHHHHHHHHTTSHH------HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHH
T ss_pred HHHHHHHHHHhCChH------HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHH
Confidence 999999999986432 123333 257889999998888999999999999998754333333332 5777888
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHH
Q 005686 527 MAFGKYQRRNLRIVYDAIGTLADA 550 (683)
Q Consensus 527 ~~l~~~~~~~~~~~~~~l~~l~~~ 550 (683)
.++.+.+.+.+..+..+|.++...
T Consensus 715 ~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 715 TLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHHHHHHHHhC
Confidence 888887778888899999998763
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.74 E-value=7.5e-15 Score=163.48 Aligned_cols=510 Identities=11% Similarity=0.046 Sum_probs=307.1
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc----
Q 005686 51 NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---- 126 (683)
Q Consensus 51 ~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~---- 126 (683)
+.++..|. +.++.+|..++..++.. .. ..........|+.+|.++++.+|..++.++..++.....
T Consensus 118 ~~lv~~L~---~~~~~~r~~a~~~l~~~-~~------~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 118 PTNVQRLA---EPSQMLKHAVVNLINYQ-DD------AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHhc---CccHHHHHHHHHHHHhh-hH------HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 44555555 45678888888777632 21 123355566777778888999999999999999875311
Q ss_pred CChHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 005686 127 AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (683)
Q Consensus 127 ~~~~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~ 205 (683)
..-++.++.|.+.+.++ ++.+|..++.+|..++..... ... -.-...+|.++..+.++++.+|..|+.+|.
T Consensus 188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~------i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLA------IFKSGGIPALVNMLGSPVDSVLFHAITTLH 259 (780)
T ss_dssp TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHH------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHH------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12357888888888754 889999999999998764221 100 011367899999999999999999999999
Q ss_pred HHHhccchhhHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHHhhcCCC-hHHHHHH
Q 005686 206 QFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTD-DDVALEA 282 (683)
Q Consensus 206 ~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~-~~vr~~a 282 (683)
.++...+....... ...++.++.++.+++..++..++.+|..++....+.-.... ...++.++..+++.+ ...+..+
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a 339 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence 99866433222111 24688888888888889999998888877653322111111 123444455555544 4455567
Q ss_pred hhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccc
Q 005686 283 CEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIV 362 (683)
Q Consensus 283 ~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~ 362 (683)
..++..++........+ .-..+++.++..+...+
T Consensus 340 ~~aL~~Ls~~~~~~~~i--~~~g~l~~Ll~lL~~~~-------------------------------------------- 373 (780)
T 2z6g_A 340 SRVLKVLSVCSSNKPAI--VEAGGMQALGLHLTDPS-------------------------------------------- 373 (780)
T ss_dssp HHHHHHHHTSTTHHHHH--HHTTHHHHHGGGTTCSC--------------------------------------------
T ss_pred HHHHHHhhcChHHHHHH--HHhchHHHHHHHHcCCc--------------------------------------------
Confidence 77888887652221111 11245666666554321
Q ss_pred ccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhh
Q 005686 363 NVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIP 440 (683)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~ 440 (683)
..++..+..++..++...+. .....+++.+.+.+.+.+ |.+|..|+.+|+.++.+..+...... ...++.++.
T Consensus 374 --~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d---~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 448 (780)
T 2z6g_A 374 --QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD---INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 448 (780)
T ss_dssp --HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHH
T ss_pred --hHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 12566778888888876654 445678899999998888 99999999999999886543221111 225677777
Q ss_pred ccCC-CC-hhHHHHHHHHHHHHHHHHHhhhCCCcc--hhhHHHHHHHHHHHhccCCc-cHHHHHHHHHHHHHHHhcccch
Q 005686 441 LLDD-KF-PLIRSISCWTLSRFSKFIVQDIGHQNG--REQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEAAEELA 515 (683)
Q Consensus 441 ~l~d-~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~~~~l~~l~~~l~d~~~-~v~~~a~~al~~l~~~~~~~l~ 515 (683)
.+.+ .+ ..||..|+++|+.++...... ... .-.-...++.|++.+.+++. .++..|+++|++++...... .
T Consensus 449 lL~~~~~~~~v~~~Al~aL~nL~~~~~~~---~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~ 524 (780)
T 2z6g_A 449 TVLRAGDREDITEPAICALRHLTSRHQDA---EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-A 524 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSSTTH---HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-H
T ss_pred HHHccCCHHHHHHHHHHHHHHHHhcCchH---HHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-H
Confidence 7764 23 489999999999997422110 000 01113457888888887665 89999999999997422111 1
Q ss_pred HHH-HHHHHHHHHHHHHhhH----------------------hHHHHHHHHHHHHHHHhccccCchhH-HHhhhHHHHHH
Q 005686 516 PRL-EIILQHLMMAFGKYQR----------------------RNLRIVYDAIGTLADAVGFELNQPVY-LDILMPPLIAK 571 (683)
Q Consensus 516 ~~l-~~i~~~L~~~l~~~~~----------------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~ 571 (683)
... ..+++.|+..+...+. ..+..+..+|+.++... .. .... -...+|.++..
T Consensus 525 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--~~-~~~l~~~~~i~~Lv~l 601 (780)
T 2z6g_A 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HN-RIVIRGLNTIPLFVQL 601 (780)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--HH-HHHHHHTCCHHHHHHG
T ss_pred HHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--hh-HHHHHHCCcHHHHHHH
Confidence 111 1345555666654321 22335666666664321 10 0001 12356677666
Q ss_pred HhcCCCCCcch-hhHHhHHHHHHHHhccccccchHH--HHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHH
Q 005686 572 WQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQP--VFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (683)
Q Consensus 572 ~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~ 648 (683)
+.. .+..+ ..+..+++.++. .......+.. .++.+.+++.+ .+.+++..|..++..++
T Consensus 602 L~~---~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~--------------~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 602 LYS---PIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHS--------------RNEGVATYAAAVLFRMS 662 (780)
T ss_dssp GGC---SCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGC--------------SCHHHHHHHHHHHHHHH
T ss_pred HcC---CCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcC--------------CCHHHHHHHHHHHHHHH
Confidence 653 23333 345556666542 1111111111 23333333221 36678999999999888
Q ss_pred HHhccch
Q 005686 649 EGLGSGI 655 (683)
Q Consensus 649 ~~~~~~~ 655 (683)
..-+..+
T Consensus 663 ~~~~~~~ 669 (780)
T 2z6g_A 663 EDKPQDY 669 (780)
T ss_dssp TTSCTTH
T ss_pred cCChHhh
Confidence 7554433
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.73 E-value=5.3e-14 Score=152.50 Aligned_cols=525 Identities=11% Similarity=0.044 Sum_probs=314.7
Q ss_pred hhcCCCCHHHHHHHHHHHHHHh--cC--CChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHH
Q 005686 23 QQISPSSTADKSQIWQQLQQYS--QF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSEL 98 (683)
Q Consensus 23 ~~~s~~~~~~r~~A~~~L~~~~--~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~L 98 (683)
.+.+++.. .|+.+...|--+. .. +......+..++ +.+...|+.+-..+.+.. .-+++....+.+.+
T Consensus 42 ~l~~~~~~-~k~~~l~kli~~~~~G~d~~~~~~~vik~~~---s~~~~~Krl~Yl~~~~~~-----~~~~e~~~l~in~l 112 (618)
T 1w63_A 42 SFREEDNT-YRCRNVAKLLYMHMLGYPAHFGQLECLKLIA---SQKFTDKRIGYLGAMLLL-----DERQDVHLLMTNCI 112 (618)
T ss_dssp HHTTTCTT-THHHHHHHHHHHHHTTCCCGGGHHHHHHHHH---SSSHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHH
T ss_pred HhhCCCHH-HHHHHHHHHHHHHHcCCCCcchHHHHHHHHc---CCchHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Confidence 33345555 5555544444321 11 112233444443 567788888777665443 23466566677788
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchh
Q 005686 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (683)
Q Consensus 99 l~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 178 (683)
.+-+.++++.+|..+..+++.|.. +.-.+.+++.+.+++.+.++.+|..|+.+++.+.+..++. +
T Consensus 113 ~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~------------v 177 (618)
T 1w63_A 113 KNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL------------M 177 (618)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG------------G
T ss_pred HHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH------------H
Confidence 888889999999999999998874 2344677999999999999999999999999999976643 3
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccch---hhHHhHHHHHHHHHhhhC-----------CCCHHHHHHHHHH
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSN-----------DPSAEVRKLVCAA 244 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~-----------~~~~~~~~~~~~~ 244 (683)
..+++.+...+.|.++.|+..|+.++..+....|+ .+...++.++..|..... .+++-.+..++++
T Consensus 178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~ 257 (618)
T 1w63_A 178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL 257 (618)
T ss_dssp GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence 46777788899999999999999999999866443 222233334444333211 2356677778888
Q ss_pred HHHHHhhCccchhhhHHHHHHHHHHh---hcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhh
Q 005686 245 FNLLIEVRPSFLEPHLRNLFEYMLQV---NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (683)
Q Consensus 245 l~~l~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~ 321 (683)
|..+....+..-.. +..++..+... .++.+..+...|..++..+... .. .....+..+...+...+
T Consensus 258 L~~l~~~~~~~~~~-~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~---~~----l~~~a~~~L~~~L~~~d--- 326 (618)
T 1w63_A 258 LRILGRNDDDSSEA-MNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE---SG----LRVLAINILGRFLLNND--- 326 (618)
T ss_dssp HHHHTTTCHHHHHT-THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC---HH----HHHHHHHHHHHHHTCSS---
T ss_pred HHHhCCCCHHHHHH-HHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC---HH----HHHHHHHHHHHHHhCCC---
Confidence 88877655432211 12222222221 1233456777777777665332 11 11223334433332111
Q ss_pred hhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccC
Q 005686 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS 401 (683)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 401 (683)
.++|..+..++..++...+. .+....+.+..++.++
T Consensus 327 -------------------------------------------~~vr~~aL~~L~~i~~~~p~-~~~~~~~~i~~~l~d~ 362 (618)
T 1w63_A 327 -------------------------------------------KNIRYVALTSLLKTVQTDHN-AVQRHRSTIVDCLKDL 362 (618)
T ss_dssp -------------------------------------------TTTHHHHHHHHHHHHHHHHH-HHGGGHHHHHHGGGSS
T ss_pred -------------------------------------------CchHHHHHHHHHHHHhhCHH-HHHHHHHHHHHHccCC
Confidence 14789999999999887654 3345566778888888
Q ss_pred CCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHH
Q 005686 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (683)
Q Consensus 402 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 481 (683)
+ ..+|..++.++..++.... +..+++.+...+.+.+..+|..++.+++.++..+. +.....+
T Consensus 363 d---~~Ir~~alelL~~l~~~~n------v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~---------~~~~~~v 424 (618)
T 1w63_A 363 D---VSIKRRAMELSFALVNGNN------IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYA---------PSKRWHI 424 (618)
T ss_dssp C---HHHHHHHHHHHHHHCCSSS------THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC---------CCHHHHH
T ss_pred C---hhHHHHHHHHHHHHccccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC---------ccHHHHH
Confidence 8 9999999999999887432 24455666666667889999999999999998553 2234555
Q ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh--hHhHHHHHHHHHHHHHHHhccc-cC--
Q 005686 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFE-LN-- 556 (683)
Q Consensus 482 ~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~-~~-- 556 (683)
+.+++.+.+....++..+..++..+++... .+.. .++..|...+.+. .+.....++.++|..+...... ..
T Consensus 425 ~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~l~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~ 500 (618)
T 1w63_A 425 DTIMRVLTTAGSYVRDDAVPNLIQLITNSV-EMHA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEE 500 (618)
T ss_dssp HHHHHHHHHTGGGSCSSHHHHHHHHHHHSC-STHH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSS
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHhcCh-hHHH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccc
Confidence 666666666555677777888888877643 2222 3444555666542 2233456788888887655321 00
Q ss_pred ch--hHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCC
Q 005686 557 QP--VYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYD 633 (683)
Q Consensus 557 ~~--~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 633 (683)
.| ..-..+++.+...+.... ++..+ ..++.++..+.... ... ...+. .+|.... ...+
T Consensus 501 ~~~~~~~~~~~~~l~~~l~~~~-~~~~vr~~~lta~~Kl~~~~----~~~-~~~l~---~~L~~~~----------~~~d 561 (618)
T 1w63_A 501 EPIQVTEDEVLDILESVLISNM-STSVTRGYALTAIMKLSTRF----TCT-VNRIK---KVVSIYG----------SSID 561 (618)
T ss_dssp CCCCCCHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHHHTTC----SSC-HHHHH---HHHHHHT----------TCSC
T ss_pred cccCCCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhC----cch-HHHHH---HHHHHhc----------CCCC
Confidence 00 001122223333333221 23333 24445554444322 122 22233 3343321 1147
Q ss_pred chHHHHHHHHHHHHHHHhccchHHhHHhhcCCcccc
Q 005686 634 KEFVVCCLDLLSGLAEGLGSGIESLVISLFPNLTWK 669 (683)
Q Consensus 634 ~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l~~~ 669 (683)
.|+|+.|...+.-+.. +.....-+-.=+|.+...
T Consensus 562 ~evrdRA~~y~~ll~~--~~~~~~~vl~~~P~~~~~ 595 (618)
T 1w63_A 562 VELQQRAVEYNALFKK--YDHMRSALLERMPVMEKV 595 (618)
T ss_dssp HHHHHHHHHHHHHHHT--TTTHHHHHHSCCCCCCC-
T ss_pred HHHHHHHHHHHHHHcC--cHHHHHHHhhcCCCCCcc
Confidence 7899999988777654 334443333335655443
No 36
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.72 E-value=4.6e-14 Score=152.91 Aligned_cols=431 Identities=13% Similarity=0.023 Sum_probs=294.8
Q ss_pred CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHH-----HHHHHHHhhhhhcCChHHHHHHHHHHHHH
Q 005686 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ-----QYIKSELLPCLGAADRHIRSTVGTIVSVV 120 (683)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~-----~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i 120 (683)
.+++++.++.++. +.++.++..|...+.+...+ ++.+ ..+ +.|..++.+++..+|..++.+|..+
T Consensus 288 ~~G~v~~li~Ll~---s~~~~~q~~A~~al~~aa~~------~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl 357 (810)
T 3now_A 288 REGILQMILAMAT---TDDELQQRVACECLIAASSK------KDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKL 357 (810)
T ss_dssp TTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHTTS------HHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHhC---CCCHHHHHHHHHHHHHHcCC------cHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5678888888776 56888888888887764322 2222 233 5666677777889999999999998
Q ss_pred Hhhc---Cc------CChHHHHHHHHHHhccC--ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhh
Q 005686 121 VQLG---GI------AGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (683)
Q Consensus 121 ~~~~---~~------~~~~~l~~~l~~~l~s~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 189 (683)
.... .+ +....+++.+.+++.++ +..+|..++.+|.+++........ + ..-..++|.+++.+
T Consensus 358 ~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~--l-----v~d~g~Ip~LV~LL 430 (810)
T 3now_A 358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEK--L-----IEDKASIHALMDLA 430 (810)
T ss_dssp HTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHH--H-----HHCHHHHHHHHHHH
T ss_pred ccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHH--H-----HHccchHHHHHHHh
Confidence 7431 11 23567899999999887 889999999999999875443210 0 01157899999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhccch------------------------hhHHhHH---------HHHHHHHhhhCCCCHH
Q 005686 190 QSPHTSLRKLSLGSVNQFIMLMPS------------------------ALFVSMD---------QYLQGLFLLSNDPSAE 236 (683)
Q Consensus 190 ~~~~~~vr~~a~~~l~~~~~~~~~------------------------~~~~~~~---------~~l~~l~~~~~~~~~~ 236 (683)
++++..++..|+.+|..++...++ .-.+... ..++.|..++.++++.
T Consensus 431 ~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~ 510 (810)
T 3now_A 431 RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHN 510 (810)
T ss_dssp HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHH
T ss_pred CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHH
Confidence 999999999999999999863210 0001111 3578888888989999
Q ss_pred HHHHHHHHHHHHHhhCccchhhhH--HHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHH-hhhhhhHHHHHhh
Q 005686 237 VRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK-EFLPRLVPVLLSN 313 (683)
Q Consensus 237 ~~~~~~~~l~~l~~~~~~~~~~~l--~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~l~~l~~~l~~~ 313 (683)
+++.++.+|..++.. ++ ....+ ...++.++..+.+.++..+..|..++..++........+. ......+|.|+..
T Consensus 511 vqe~Aa~aL~NLA~d-~~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~L 588 (810)
T 3now_A 511 SQELIARVLNAVCGL-KE-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNL 588 (810)
T ss_dssp HHHHHHHHHHHHHTS-HH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-HH-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHH
Confidence 999999999999854 22 22222 1356666677777788899999999999876521111111 1122366777665
Q ss_pred cccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cch-hh
Q 005686 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PT 389 (683)
Q Consensus 314 l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~ 389 (683)
+...... ..+..|..+|..++..-.+ .+. ..
T Consensus 589 L~~~~~~---------------------------------------------l~~~eAl~AL~NLa~~~d~~~~~Ii~aG 623 (810)
T 3now_A 589 LQQDCTA---------------------------------------------LENFESLMALTNLASMNESVRQRIIKEQ 623 (810)
T ss_dssp TSTTSCH---------------------------------------------HHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred hCCCCcH---------------------------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 5421000 1233466677777654321 122 24
Q ss_pred hHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH--HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhh
Q 005686 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (683)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (683)
.++.+.+++.+++ ..+|.+|+.+++.++.+.. ....++ ...++.++..+...+..+|..|+|+|+.++......
T Consensus 624 ~l~~Lv~LL~s~~---~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~ 699 (810)
T 3now_A 624 GVSKIEYYLMEDH---LYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKC 699 (810)
T ss_dssp HHHHHHHHHHSCC---TTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHH
T ss_pred CHHHHHHHHcCCC---HHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 6788888888887 8999999999999987543 223333 247889999999999999999999999999743221
Q ss_pred hCCCcchhhH--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHH--HHHHHHHHHHHHh---hHhHHHHH
Q 005686 468 IGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE--IILQHLMMAFGKY---QRRNLRIV 540 (683)
Q Consensus 468 ~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~--~i~~~L~~~l~~~---~~~~~~~~ 540 (683)
....+ ...++.|+..+.+++..+|..|++++.+++... .....++- ..++.|..++... +.+....+
T Consensus 700 -----~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s-~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A 773 (810)
T 3now_A 700 -----CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG-EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773 (810)
T ss_dssp -----HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred -----HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence 22333 358889999999999999999999999998632 22222222 3556666666443 34556678
Q ss_pred HHHHHHHHHH
Q 005686 541 YDAIGTLADA 550 (683)
Q Consensus 541 ~~~l~~l~~~ 550 (683)
+++|..+...
T Consensus 774 l~aL~~ll~~ 783 (810)
T 3now_A 774 TQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888887654
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.72 E-value=1e-14 Score=162.46 Aligned_cols=453 Identities=14% Similarity=0.077 Sum_probs=299.1
Q ss_pred CCCCHHHHHHHHHHHHHHhc----------CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHH
Q 005686 26 SPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (683)
Q Consensus 26 s~~~~~~r~~A~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~ 95 (683)
++|.. +|..|...|..+.. .++++..|+..|.+ +.++.+|..|+..|++. ...-.....-......
T Consensus 161 ~~d~~-vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~L-s~~~~~~~~i~~~g~I 236 (780)
T 2z6g_A 161 DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNL-SHHREGLLAIFKSGGI 236 (780)
T ss_dssp CSCHH-HHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHH-HTSHHHHHHHHHTTHH
T ss_pred CCCHH-HHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHH-hCCchhHHHHHHcCCH
Confidence 56777 99999999998764 34678888888875 56899999999999883 3221110011122455
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC--C--hHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCC
Q 005686 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--G--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (683)
Q Consensus 96 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~--~--~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (683)
+.|+.++.++++.+|..++.+|..++...... . -...++.+.+.+.+++..++..++.+|..++....+... .
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~-~-- 313 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL-I-- 313 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH-H--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH-H--
Confidence 67778888889999999999999999764211 1 134688999999998989999999999888754332110 0
Q ss_pred CCCcchhHhhHHHHHHhhcCCCH-HHHHHHHHHHHHHHhccchhhHHhH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 005686 172 GLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (683)
Q Consensus 172 ~~~~~~~~~i~~~l~~~l~~~~~-~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l 248 (683)
-.-...++.++..+.+.+. ..+..+..++..+... +.. ...+ ...++.|..++.+.+..++..++.+|..+
T Consensus 314 ----i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~-~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 314 ----ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp ----HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTH-HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHH-HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 0012457788888887655 4556777888777643 221 2222 14578888888888899999999999999
Q ss_pred HhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhh-hhhHHHHHhhcccChhhhhhhhhc
Q 005686 249 IEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAE 327 (683)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~~~~~~ 327 (683)
+...+... ....+++.++..+.+.++++|..|+.++..++... ........ ...++.++..+....+
T Consensus 388 ~~~~~~~~--~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~-------- 455 (780)
T 2z6g_A 388 SDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGD-------- 455 (780)
T ss_dssp HTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHHHHHTTTHHHHHHHHHHHHTT--------
T ss_pred hccchhhh--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHHccCC--------
Confidence 87654421 22467777777888899999999999999998752 11111111 2345555544432100
Q ss_pred ccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-c-----c-hhhhHHHHHHHHcc
Q 005686 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-E-----I-LPTLMPVIQAKLSA 400 (683)
Q Consensus 328 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~-----~-~~~l~~~l~~~l~~ 400 (683)
.-.+|..+..+|..++...++ + + ....++.+.+.+.+
T Consensus 456 ------------------------------------~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 499 (780)
T 2z6g_A 456 ------------------------------------REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499 (780)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence 003778888888888654433 1 1 13467888888876
Q ss_pred CCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCCC----------------------hhHHHHHHHHH
Q 005686 401 SGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKF----------------------PLIRSISCWTL 457 (683)
Q Consensus 401 ~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~----------------------~~vr~~a~~~l 457 (683)
++. |.+|.+++++|+.++.+.... .... ..+++.++..+.+.+ ..++..++.+|
T Consensus 500 ~~~--~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL 576 (780)
T 2z6g_A 500 PSH--WPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGAL 576 (780)
T ss_dssp TCC--HHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHH
T ss_pred CCh--HHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHH
Confidence 542 799999999999998754321 1111 125566666555433 34555666666
Q ss_pred HHHHHHHHhhhCCCcchhhH--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHH--HHHHHHHHHHHhh
Q 005686 458 SRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI--ILQHLMMAFGKYQ 533 (683)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~--i~~~L~~~l~~~~ 533 (683)
+.++.... ....+ ..+++.|+..+.+.++.++..|+.+|..++.. ......+.. .++.|..++.+.+
T Consensus 577 ~~La~~~~-------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~~ 647 (780)
T 2z6g_A 577 HILARDIH-------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRN 647 (780)
T ss_dssp HHHTTSHH-------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHhcChh-------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCCC
Confidence 66653211 11111 34688899999999999999999999988632 222233332 4566677777666
Q ss_pred HhHHHHHHHHHHHHHHHh
Q 005686 534 RRNLRIVYDAIGTLADAV 551 (683)
Q Consensus 534 ~~~~~~~~~~l~~l~~~~ 551 (683)
..++..+..+|..++..-
T Consensus 648 ~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 648 EGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 677788999999887653
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.71 E-value=1.7e-14 Score=156.42 Aligned_cols=442 Identities=12% Similarity=0.081 Sum_probs=274.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHH
Q 005686 20 LLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSE 97 (683)
Q Consensus 20 ~l~~~~s~~~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~ 97 (683)
+++...+++-+ .|+-+.-++..+.+ +|+......+.+.++ .+.++.+|-.|+..|.+.. .++..+.+...
T Consensus 75 vik~~~s~~~~-~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~ 146 (618)
T 1w63_A 75 CLKLIASQKFT-DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGE 146 (618)
T ss_dssp HHHHHHSSSHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred HHHHHcCCchH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHH
Confidence 33444478888 99999998888654 666544344444322 3778999999998886652 45666778888
Q ss_pred HhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcch
Q 005686 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (683)
Q Consensus 98 Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (683)
+..++.++++.||+.++.++..+++.. +...+.+++.+..++.+.++.++.+|+.+|..+++..++.. ..
T Consensus 147 l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~---------~~ 216 (618)
T 1w63_A 147 VEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML---------AH 216 (618)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH---------HH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH---------HH
Confidence 888999999999999999999999875 33445677888888999999999999999999886543210 01
Q ss_pred hHhhHHHHHHhhc---------------CCCHHHHHHHHHHHHHHHhccchh---hHHh---------------------
Q 005686 178 INIFLPRLLQFFQ---------------SPHTSLRKLSLGSVNQFIMLMPSA---LFVS--------------------- 218 (683)
Q Consensus 178 ~~~i~~~l~~~l~---------------~~~~~vr~~a~~~l~~~~~~~~~~---~~~~--------------------- 218 (683)
...++|.+++.|. .+++-.+...++++..+....|.. +.+.
T Consensus 217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 2333444443332 135666666666666655432210 0000
Q ss_pred --------------HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhh
Q 005686 219 --------------MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (683)
Q Consensus 219 --------------~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~ 284 (683)
....++.+..++.++++++|..++.+|..++...|..+.+|...++. ++.+++..+|..|++
T Consensus 297 a~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~----~l~d~d~~Ir~~ale 372 (618)
T 1w63_A 297 TVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVD----CLKDLDVSIKRRAME 372 (618)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHH----GGGSSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHH----HccCCChhHHHHHHH
Confidence 01234455556667778888888888888888888777777665554 667889999999999
Q ss_pred HHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccc
Q 005686 285 FWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (683)
Q Consensus 285 ~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~ 364 (683)
.+..++.... +. .++..++.++...+
T Consensus 373 lL~~l~~~~n----v~----~iv~eL~~~l~~~d---------------------------------------------- 398 (618)
T 1w63_A 373 LSFALVNGNN----IR----GMMKELLYFLDSCE---------------------------------------------- 398 (618)
T ss_dssp HHHHHCCSSS----TH----HHHHHHHHHHHHCC----------------------------------------------
T ss_pred HHHHHccccc----HH----HHHHHHHHHHHhCC----------------------------------------------
Confidence 9999987522 22 23333333332111
Q ss_pred ccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC
Q 005686 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (683)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 444 (683)
..+|..+...++.++..++.. ....++.+.+.+++.. -.++..++..+..+....++.....+..++..+....
T Consensus 399 ~e~r~~~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~~---~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~-- 472 (618)
T 1w63_A 399 PEFKADCASGIFLAAEKYAPS-KRWHIDTIMRVLTTAG---SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY-- 472 (618)
T ss_dssp HHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHHHTG---GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccc--
Confidence 137889999999999987643 3456666767776654 4455556666666665433221122333343333221
Q ss_pred CChhHHHHHHHHHHHHHHHHHhh-h-C--CC-cchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHH
Q 005686 445 KFPLIRSISCWTLSRFSKFIVQD-I-G--HQ-NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE 519 (683)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~-~-~--~~-~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~ 519 (683)
.+..+...++|++|.++..+... . + |. ........++..+++.. ..++.+|..++.|+.++....++ ..+.+.
T Consensus 473 ~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~-~~~~l~ 550 (618)
T 1w63_A 473 SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFTC-TVNRIK 550 (618)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSS-CHHHHH
T ss_pred ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcc-hHHHHH
Confidence 23344457899999999877420 0 0 00 01112223333333222 45789999999999988765542 233333
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 005686 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (683)
Q Consensus 520 ~i~~~L~~~l~~~~~~~~~~~~~~l~~l~ 548 (683)
.+++ ....+.+.+.+..+...+..+.
T Consensus 551 ~~L~---~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 551 KVVS---IYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHH---HHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHH---HhcCCCCHHHHHHHHHHHHHHc
Confidence 3332 2233344466666666665543
No 39
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.70 E-value=1.8e-13 Score=154.65 Aligned_cols=276 Identities=13% Similarity=0.072 Sum_probs=197.0
Q ss_pred cccHHHHHHHHHHHHHhhcCc---------cchhhhHHHHHHHHc-----cCCCCChhhHHHHHHHHHHHHhcchhhhhh
Q 005686 364 VWNLRKCSAAALDVLSNVFGD---------EILPTLMPVIQAKLS-----ASGDEAWKDREAAVLALGAIAEGCIKGLYP 429 (683)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~---------~~~~~l~~~l~~~l~-----~~~~~~~~~r~aal~~l~~l~~~~~~~~~~ 429 (683)
.|..+.++.-++..+++.+.. ..+|.+++.+...++ .++ +.+|..++.+++.+++.... -.+
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h---p~V~~~~~~~l~rys~~~~~-~~~ 531 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH---PLVQLLYMEILVRYASFFDY-ESA 531 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC---HHHHHHHHHHHHHTGGGGGT-CCT
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHHHhc-Cch
Confidence 488899999999999998753 346678888888776 455 99999999999999987753 247
Q ss_pred hHHHHHHHHhh--ccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccC----C-----------
Q 005686 430 HLSEIVAFLIP--LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT----N----------- 492 (683)
Q Consensus 430 ~~~~l~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~----~----------- 492 (683)
+++.+++.++. .+.+++++||.+|+.++.++++.++.. ..+|++.++..+...+.-. +
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-----L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-----VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-----CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-----hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 89999999999 999999999999999999999998754 4678888888887766521 0
Q ss_pred ------ccHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHHHh----hH--h---HHHHHHHHHHHHHHHhccc
Q 005686 493 ------KRVQEAACSAFATLEEEAA---EELAPRLEIILQHLMMAFGKY----QR--R---NLRIVYDAIGTLADAVGFE 554 (683)
Q Consensus 493 ------~~v~~~a~~al~~l~~~~~---~~l~~~l~~i~~~L~~~l~~~----~~--~---~~~~~~~~l~~l~~~~~~~ 554 (683)
..-+.....|++.++...+ +....|+..+++-++..++.. .. . .....+.+++.+++.....
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc
Confidence 1135667888888887754 233456666666655555432 11 1 1225566777777654211
Q ss_pred cC--c--hhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccC
Q 005686 555 LN--Q--PVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAG 629 (683)
Q Consensus 555 ~~--~--~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 629 (683)
-. . ...+.+.++.+...+.... .+..+ .++..+++.+..++|..+.|+++++++.++..++
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~------------- 752 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSID------------- 752 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCC-------------
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCC-------------
Confidence 00 0 1356677777777777654 23334 4678889999999999999999999998763211
Q ss_pred CCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCc
Q 005686 630 AQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNL 666 (683)
Q Consensus 630 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l 666 (683)
-.+ ....+.+++.++..+|.++.+++..+++.|
T Consensus 753 ---~~e-~~~fL~l~~qli~~f~~~~~~~l~~ll~~l 785 (980)
T 3ibv_A 753 ---MNE-LVDVLSFISQLIHIYKDNMMEITNRMLPTL 785 (980)
T ss_dssp ---TTT-HHHHHHHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred ---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 234588899999999998888877777554
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.69 E-value=4e-14 Score=155.23 Aligned_cols=477 Identities=11% Similarity=0.053 Sum_probs=296.1
Q ss_pred HHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC----ChHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhcccc
Q 005686 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDS 168 (683)
Q Consensus 94 i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~----~~~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~ 168 (683)
....|...|.++++.+|..++.+++.++...... .-++.++.+.+.+.++ ++.+|..++.+|..++...... .
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~-~- 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-L- 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH-H-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-H-
Confidence 3456777788889999999999999999764211 1246788888888764 7899999999999877653211 0
Q ss_pred CCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q 005686 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (683)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (683)
. -.-...+|.+++.+.++++.++..|+.+|..++...+....... ...++.|...+.++++.++..++.+|..
T Consensus 93 ~------i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 93 A------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp H------HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred H------HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 0 01135789999999999999999999999999866432222221 2568888998888888888888889988
Q ss_pred HHhhCccchhhhH-HHHHHHHHHhhcCC-ChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhh
Q 005686 248 LIEVRPSFLEPHL-RNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (683)
Q Consensus 248 l~~~~~~~~~~~l-~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~ 325 (683)
++...++.-.... ...++.++..+.+. .+.++..+..++..++..+.....+.. ...++.++..+...+
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~--~g~l~~L~~ll~~~~------- 237 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE--AGGMQALGLHLTDPS------- 237 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH--TTHHHHHHTTTTCSC-------
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH--CCCHHHHHHHHhcCC-------
Confidence 8754332111111 12344455555543 456777888888888765322222211 235666665554211
Q ss_pred hcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCC
Q 005686 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDE 404 (683)
Q Consensus 326 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~ 404 (683)
..++..+..+|..++...+. .....+++.+.+.+.+.+
T Consensus 238 ---------------------------------------~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d-- 276 (644)
T 2z6h_A 238 ---------------------------------------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-- 276 (644)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC--
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC--
Confidence 13677888899988876544 445578899999998887
Q ss_pred ChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCC--ChhHHHHHHHHHHHHHHHHHhhhCCCcchh--hHHH
Q 005686 405 AWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDK--FPLIRSISCWTLSRFSKFIVQDIGHQNGRE--QFEK 479 (683)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~~~~ 479 (683)
+.+|..++.+|+.++.+..+...... ...++.++..+.+. .+.||..|+++|+.++...+.. ..... .-..
T Consensus 277 -~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~---~~~q~~v~~~~ 352 (644)
T 2z6h_A 277 -INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA---EMAQNAVRLHY 352 (644)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH---HHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH---HHHHHHHHHcc
Confidence 99999999999999886533221111 12577777777642 3799999999999997421100 00011 1134
Q ss_pred HHHHHHHHhccCC-ccHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHhhH----------------------h
Q 005686 480 VLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQR----------------------R 535 (683)
Q Consensus 480 ~l~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~l~~~l-~~i~~~L~~~l~~~~~----------------------~ 535 (683)
.++.|.+.|.+++ +.++..|+++|++++...... .... ..+++.|+..+...+. .
T Consensus 353 ~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~ 431 (644)
T 2z6h_A 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 431 (644)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHH
T ss_pred ChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHH
Confidence 6888999998765 689999999999987532211 1111 2355555666654321 2
Q ss_pred HHHHHHHHHHHHHHHhccccCchhH-HHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccccccchH--HHHHHH
Q 005686 536 NLRIVYDAIGTLADAVGFELNQPVY-LDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQ--PVFQRC 611 (683)
Q Consensus 536 ~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~f~~~~~--~~~~~l 611 (683)
.+..+..+|..++...... ... -...+|.+++.+.. .+.++ ..+..+++.++.. ......+. ..++.+
T Consensus 432 v~~~a~~aL~~La~~~~~~---~~l~~~~~i~~Lv~lL~~---~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L 503 (644)
T 2z6h_A 432 IVEGCTGALHILARDVHNR---IVIRGLNTIPLFVQLLYS---PIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPL 503 (644)
T ss_dssp HHHHHHHHHHHHTTSHHHH---HHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHH---HHHHhCCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHH
Confidence 2335666666665432111 011 12466777776643 23333 3455556555421 11111110 012222
Q ss_pred HHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccch
Q 005686 612 INIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI 655 (683)
Q Consensus 612 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~ 655 (683)
..++. ..+.+++..|..+++.++..-+..+
T Consensus 504 ~~ll~--------------~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 504 TELLH--------------SRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp HHHTT--------------CSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHc--------------CCCHHHHHHHHHHHHHHhccCcHhh
Confidence 22221 1366789999888888876554333
No 41
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.69 E-value=1.1e-12 Score=148.53 Aligned_cols=553 Identities=11% Similarity=0.089 Sum_probs=325.0
Q ss_pred HHHHHHHHHHHHh------cCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhh----ccCCHhHHHHHHH-----
Q 005686 32 DKSQIWQQLQQYS------QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY----KSMSPSNQQYIKS----- 96 (683)
Q Consensus 32 ~r~~A~~~L~~~~------~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w----~~l~~~~~~~i~~----- 96 (683)
+|++....+..+. ..|+++..+...+. .++..+..+..+|+....... ..+...-+..+++
T Consensus 116 i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~ 191 (1023)
T 4hat_C 116 LINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE 191 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 5555666666542 24666666666553 244556656666655443322 2244443334433
Q ss_pred ------HHhhhhh-cCChHHHHHHHHHHHHHHhhcCcCCh--HHHHHHHH-HHhccCChhHHhHHHHHHHHHHhh-c-hh
Q 005686 97 ------ELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGW--LELLQALV-TCLDSNDINHMEGAMDALSKICED-I-PQ 164 (683)
Q Consensus 97 ------~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~--~~l~~~l~-~~l~s~~~~~r~~al~~l~~l~~~-~-~~ 164 (683)
.+...+. ..++.+...+-.+++....+.+.+.. +++++.+. .++. ++..|..|+.||..++.. . +.
T Consensus 192 ~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~ 269 (1023)
T 4hat_C 192 FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQD 269 (1023)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCc
Confidence 2223333 34566666777777777665322111 34677777 6664 567899999999999862 2 11
Q ss_pred --ccccCCCCCCcchhHhhHHHHHHhh------------------cCCCHHHHHHHHHHHHHHHhccch------hhHHh
Q 005686 165 --VLDSDVPGLAECPINIFLPRLLQFF------------------QSPHTSLRKLSLGSVNQFIMLMPS------ALFVS 218 (683)
Q Consensus 165 --~~~~~~~~~~~~~~~~i~~~l~~~l------------------~~~~~~vr~~a~~~l~~~~~~~~~------~~~~~ 218 (683)
... ..+..+++.++..+ .+.+.+....-.+.+..+++.... .+.+.
T Consensus 270 ~~~~~--------~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~ 341 (1023)
T 4hat_C 270 NDLIK--------RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL 341 (1023)
T ss_dssp CHHHH--------HHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHH
T ss_pred hHHHH--------HHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHH
Confidence 010 11222222222211 122344444455555444432211 12233
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhC------ccchhhhHHHHHHHHHHhhcCCC-----------------
Q 005686 219 MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR------PSFLEPHLRNLFEYMLQVNKDTD----------------- 275 (683)
Q Consensus 219 ~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~l~~l~~~~~~~~~~~~----------------- 275 (683)
+...+..++.....++.++.+.+++.|..+.+.. ...+.|++..++..++..+.-++
T Consensus 342 l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~ 421 (1023)
T 4hat_C 342 LLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1023)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhc
Confidence 3333456666666678889899999998887642 23467788888888876654322
Q ss_pred ---hHH-HHHHh-hHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCC
Q 005686 276 ---DDV-ALEAC-EFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHG 350 (683)
Q Consensus 276 ---~~v-r~~a~-~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 350 (683)
++. .-..+ +++..++.. ... ..++.+++.+...+..
T Consensus 422 ~d~d~~~~f~~~Rd~L~~l~~l--~~~---~~~~~~~~~l~~~l~~---------------------------------- 462 (1023)
T 4hat_C 422 KESDTIQLYKSEREVLVYLTHL--NVI---DTEEIMISKLARQIDG---------------------------------- 462 (1023)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHH--CHH---HHHHHHHHHHHHHHSS----------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHhcc--CHH---HHHHHHHHHHHHHhcC----------------------------------
Confidence 000 00000 222222221 000 1111122222111110
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHhhcCc----cchhhhHHHHHHHHcc-----CCCCChhhHHHHHHHHHHHHh
Q 005686 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAE 421 (683)
Q Consensus 351 ~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~l~~ 421 (683)
...+|..|.++.-+++.++....+ ..++.+++.+.....+ +. ..+|..+++++|.+++
T Consensus 463 ----------~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k---~~v~~t~~~~lGry~~ 529 (1023)
T 4hat_C 463 ----------SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK---AVVASDIMYVVGQYPR 529 (1023)
T ss_dssp ----------TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH---HHHHHHHHHHHHTCHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHH
Confidence 113589999999999999987754 4567788888777753 33 5677788899998888
Q ss_pred cchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhC---CCcchhhHHHHHHHHHHHhccCCccHHHH
Q 005686 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG---HQNGREQFEKVLMGLLKRILDTNKRVQEA 498 (683)
Q Consensus 422 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~~~~~l~~l~~~l~d~~~~v~~~ 498 (683)
.+.. -.++++.++..++..+.++++.|..+||+++..+++.+...+. +....+|++.++..+.....+-++.-+..
T Consensus 530 wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 530 FLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 7643 2467899999999999999999999999999999998875421 11224689999998888877656677789
Q ss_pred HHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHhh---------------HhHHHHHHHHHHHHHHHhccccCchhHH
Q 005686 499 ACSAFATLEEEAAEE--LAPRLEIILQHLMMAFGKYQ---------------RRNLRIVYDAIGTLADAVGFELNQPVYL 561 (683)
Q Consensus 499 a~~al~~l~~~~~~~--l~~~l~~i~~~L~~~l~~~~---------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 561 (683)
+..|++.+++..+.. ...++..+++.+...++... .+.+..++++++.++.++|..+. +++
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~--~~~ 686 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFY--PQL 686 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGH--HHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHH--HHH
Confidence 999999999887532 33466666655555544321 12344789999999999999986 799
Q ss_pred HhhhHHHHHHHhcCCC--------CCcch-----hhHHhHH-----HHHHHHhccc------cccchHHHHHHHHHHHHH
Q 005686 562 DILMPPLIAKWQQLPN--------SDKDL-----FPLLECF-----TSIAQALGAG------FTQFAQPVFQRCINIIQT 617 (683)
Q Consensus 562 ~~~~~~l~~~~~~~~~--------~~~~~-----~~~~~~l-----~~l~~~~g~~------f~~~~~~~~~~l~~~l~~ 617 (683)
..+++.+++.++..+. +.... .+.++++ ..+...++.. ...++++++..++....+
T Consensus 687 ~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~ 766 (1023)
T 4hat_C 687 GHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN 766 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999887665321 01110 0122222 2222222221 223455666655444433
Q ss_pred HHHHhhCCcccCCCCCchHHHHHHHHHHHHHHHhccchHHhHHhhcCCc
Q 005686 618 QQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNL 666 (683)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l 666 (683)
.. + .--+.+ .+.+++.++..+|..+.+.++.++..+
T Consensus 767 ~~-----~----~~r~~~----vL~l~s~iv~~~~~~~~~~~~~il~~v 802 (1023)
T 4hat_C 767 NV-----P----DARDAE----VLNCMTTVVEKVGHMIPQGVILILQSV 802 (1023)
T ss_dssp SC-----G----GGCCHH----HHHHHHHHHHHHGGGCHHHHHHHHHHH
T ss_pred CC-----h----hhccHH----HHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 21 0 001233 488899999999998888887777554
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.69 E-value=3.3e-14 Score=155.96 Aligned_cols=457 Identities=14% Similarity=0.071 Sum_probs=302.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC----------ChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhh
Q 005686 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFP----------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (683)
Q Consensus 14 ~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p----------~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w 83 (683)
+..|+.+|. +++.. +|..|...|.++...+ +.+..|...|.+ +.++.+|..|+..|++....
T Consensus 16 i~~Lv~lL~---~~~~~-vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~--~~~~~~~~~A~~~L~~Ls~~-- 87 (644)
T 2z6h_A 16 IPELTKLLN---DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGTLHNLSHH-- 87 (644)
T ss_dssp HHHHHHHHT---CSCHH-HHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHc---CCCHH-HHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcC--
Confidence 444444443 57777 9999999999976533 456777887764 56889999999988854321
Q ss_pred ccCCHhHHH-----HHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCC----hHHHHHHHHHHhccCChhHHhHHHHH
Q 005686 84 KSMSPSNQQ-----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG----WLELLQALVTCLDSNDINHMEGAMDA 154 (683)
Q Consensus 84 ~~l~~~~~~-----~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~----~~~l~~~l~~~l~s~~~~~r~~al~~ 154 (683)
++.+. .....|+..+.++++.+|..++.+|..++....... -.+.++.+.+.+.++++..+..++.+
T Consensus 88 ----~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 88 ----REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp ----HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred ----hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 12222 344567778888899999999999999997642111 13568999999999998888888899
Q ss_pred HHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCC-HHHHHHHHHHHHHHHhccchhhHHhHH--HHHHHHHhhhC
Q 005686 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSN 231 (683)
Q Consensus 155 l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~ 231 (683)
|..++....+.-. . -.-...++.++..+.+.+ ..++..++.++..+... +.. ...+. ..++.+..++.
T Consensus 164 L~~La~~~~~~~~-~------i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~-~~~l~~~g~l~~L~~ll~ 234 (644)
T 2z6h_A 164 LQILAYGNQESKL-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN-KPAIVEAGGMQALGLHLT 234 (644)
T ss_dssp HHHHHTTCHHHHH-H------HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTH-HHHHHHTTHHHHHHTTTT
T ss_pred HHHHHhcCcHHHH-H------HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-ccc-HHHHHHCCCHHHHHHHHh
Confidence 9988864332210 0 011346788888888754 57788888898888643 221 22221 36788888888
Q ss_pred CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhh-hhhHHHH
Q 005686 232 DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVL 310 (683)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l-~~l~~~l 310 (683)
+++..++..++.+|..++...+.. .....+++.++..+.+.+++++..|+.++..++... ........ ...++.+
T Consensus 235 ~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~--~~~~~~v~~~g~v~~L 310 (644)
T 2z6h_A 235 DPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEAL 310 (644)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHH
Confidence 888999999999999998765442 223467777778888889999999999999998752 11111111 2345555
Q ss_pred HhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-c----
Q 005686 311 LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-E---- 385 (683)
Q Consensus 311 ~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~---- 385 (683)
+..+....+ .+.++..+..+|..++...++ .
T Consensus 311 v~lL~~~~~--------------------------------------------~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 311 VRTVLRAGD--------------------------------------------REDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp HHHHHHHTT--------------------------------------------CHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHccCC--------------------------------------------cHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 554432100 014788888999888764442 1
Q ss_pred -c-hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCCChhHHH-----------
Q 005686 386 -I-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRS----------- 451 (683)
Q Consensus 386 -~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~----------- 451 (683)
+ ....++.+.+.+.+++ ++.+|.+++.+++.++.+.... .... ..+++.++..+.+.++.+|.
T Consensus 347 ~v~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~ 423 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPS--HWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTC--CHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHccChHHHHHHhCccC--chHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchh
Confidence 1 1246788888887653 1899999999999998754322 1111 12566666666655444444
Q ss_pred -----------HHHHHHHHHHHHHHhhhCCCcchhhH--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH
Q 005686 452 -----------ISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (683)
Q Consensus 452 -----------~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l 518 (683)
.++.+|..++.... ....+ ...++.|+..+.+.++.++..|+.+|.+++.. ......+
T Consensus 424 ~~~~~~~~v~~~a~~aL~~La~~~~-------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i 494 (644)
T 2z6h_A 424 VEGVRMEEIVEGCTGALHILARDVH-------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAI 494 (644)
T ss_dssp CCSSCHHHHHHHHHHHHHHHTTSHH-------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHH-------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHH
Confidence 44455554443221 11122 24688899999998999999999999988642 1122222
Q ss_pred H--HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q 005686 519 E--IILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (683)
Q Consensus 519 ~--~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (683)
. ..++.|..++.+.+...+..+..+|+.++...
T Consensus 495 ~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 495 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 1 23455666666666677778888998876543
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.68 E-value=1.3e-14 Score=153.91 Aligned_cols=359 Identities=15% Similarity=0.148 Sum_probs=246.0
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhcc
Q 005686 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 133 ~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~ 211 (683)
++.+.+.++|+|+..+..|+..++.+...-...-... -.-..++|.|+++|.+ .++.++..|..+|+.++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~------ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN------IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHH------HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHH------HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 7888899999999999999999988764322110000 0124578999999975 46899999999999998765
Q ss_pred chhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHHhhcCCC-----hHHHHHHhh
Q 005686 212 PSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTD-----DDVALEACE 284 (683)
Q Consensus 212 ~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~-----~~vr~~a~~ 284 (683)
++.....+. ..++.|+.++.+++.+++..++.+|..++...+..-...+ ...++.++..+...+ ..+...+..
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 543332222 4688899999999999999999999999876543211111 123444444554432 345566777
Q ss_pred HHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccc
Q 005686 285 FWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (683)
Q Consensus 285 ~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~ 364 (683)
.+..++....... -......++|.+...+...+.
T Consensus 213 ~L~nl~~~~~~~~-~~~~~~~~lp~L~~LL~~~~~--------------------------------------------- 246 (510)
T 3ul1_B 213 TLSNLCRNKNPAP-PLDAVEQILPTLVRLLHHNDP--------------------------------------------- 246 (510)
T ss_dssp HHHHHHCCCSSCC-CHHHHHHHHHHHHHHTTCSCH---------------------------------------------
T ss_pred HHHHHhhcccchh-HHHHHHhHHHHHHHHHhcCCH---------------------------------------------
Confidence 7888877522211 112334566776665543211
Q ss_pred ccHHHHHHHHHHHHHhhcCc--c--chhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHh
Q 005686 365 WNLRKCSAAALDVLSNVFGD--E--ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLI 439 (683)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~--~--~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~ 439 (683)
.++..+..+|..++....+ . .-..+++.+.+++.+++ +.++..++.+++.++.+........+. ..++.+.
T Consensus 247 -~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~ 322 (510)
T 3ul1_B 247 -EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322 (510)
T ss_dssp -HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC
T ss_pred -HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC---hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHH
Confidence 2677788888888764432 1 12357888889999888 999999999999998766433222222 2677788
Q ss_pred hccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhh-HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH
Q 005686 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (683)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l 518 (683)
..+.++++.+|..|+|+|+.++...... .... -..+++.++..+.+.+..+|..|+++|.+++.........++
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a~~~~~-----~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITAGRQDQ-----IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTTSCHHH-----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCcHHH-----HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 8889999999999999999997543221 1111 235788999999999999999999999999876543332332
Q ss_pred --HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhc
Q 005686 519 --EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (683)
Q Consensus 519 --~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (683)
..+++.|+.++...+.+.+..++++|..+.....
T Consensus 398 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 2456777888887777777889999999887643
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.67 E-value=3.1e-14 Score=152.98 Aligned_cols=451 Identities=13% Similarity=0.058 Sum_probs=287.8
Q ss_pred CCCCHHHHHHHHHHHHHHhc----------CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHH---
Q 005686 26 SPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ--- 92 (683)
Q Consensus 26 s~~~~~~r~~A~~~L~~~~~----------~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~--- 92 (683)
++|.. +|..|...|..+.. .++.++.|...|.+ +.++.+|..|+..|++.... ++.+.
T Consensus 28 ~~~~~-v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~--~~~~~~~~~a~~~L~~ls~~------~~~~~~i~ 98 (529)
T 1jdh_A 28 DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGTLHNLSHH------REGLLAIF 98 (529)
T ss_dssp CSCHH-HHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTS------HHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc--CCCHHHHHHHHHHHHHHHcC------chhHHHHH
Confidence 56777 99999999998754 23567788888874 56889999999999874321 22332
Q ss_pred --HHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC--C--hHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc
Q 005686 93 --YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--G--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (683)
Q Consensus 93 --~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~--~--~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~ 166 (683)
...+.|+..+.++++.++..++.++..++...... . -.+.++.+.+.+.++++.++..+..+|..++....+.-
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34456777888889999999999999998764221 1 14578999999999999999999999988876433211
Q ss_pred ccCCCCCCcchhHhhHHHHHHhhcCCC-HHHHHHHHHHHHHHHhccchhhHHhH--HHHHHHHHhhhCCCCHHHHHHHHH
Q 005686 167 DSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCA 243 (683)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~ 243 (683)
. . -.-...++.++..+.+++ ...+..+..++..+... +.. ...+ ...++.+...+.++++.++..++.
T Consensus 179 ~-~------i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 179 L-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp H-H------HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTH-HHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred H-H------HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-ccc-HHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 0 0 001245777788877654 45666778888777643 221 2222 146888888888888999999999
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhh-hhhHHHHHhhcccChhhhh
Q 005686 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDES 322 (683)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~d~~ 322 (683)
+|..+....+... ....+++.++..+.+.+++++..|+.++..++... ......+. ...++.++..+....
T Consensus 250 ~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~~~~---- 321 (529)
T 1jdh_A 250 TLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAG---- 321 (529)
T ss_dssp HHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHT----
T ss_pred HHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHHccC----
Confidence 9999987654322 23467777777888889999999999999997752 11111111 124455544443210
Q ss_pred hhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc------cc-hhhhHHHHH
Q 005686 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------EI-LPTLMPVIQ 395 (683)
Q Consensus 323 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~------~~-~~~l~~~l~ 395 (683)
..+.++..+..+|..++...++ .+ -...+|.+.
T Consensus 322 ----------------------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~ 361 (529)
T 1jdh_A 322 ----------------------------------------DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361 (529)
T ss_dssp ----------------------------------------TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------------------CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH
Confidence 0124778888888888664432 11 124578888
Q ss_pred HHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCCChhHHHHHHHHHHH--HH-----------
Q 005686 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSR--FS----------- 461 (683)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~----------- 461 (683)
+.+.+++ +|..|..++++++.++.+.... .... ..++|.++..+.+.++.+|..|+|+++. +.
T Consensus 362 ~lL~~~~--~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~ 438 (529)
T 1jdh_A 362 KLLHPPS--HWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438 (529)
T ss_dssp HTTSTTC--CHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHH
T ss_pred HHhcccc--chHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHH
Confidence 8887754 2799999999999998754321 2222 2378888888888888899888887775 10
Q ss_pred --HHHHhhhCCCcchhhH--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHH--HHHHHHHHHHHHhhHh
Q 005686 462 --KFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE--IILQHLMMAFGKYQRR 535 (683)
Q Consensus 462 --~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~--~i~~~L~~~l~~~~~~ 535 (683)
..+............+ ...++.++..+.++++.++..|+.+|.++... ......+. ..++.|...+.+.+..
T Consensus 439 ~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~~~~~~ 516 (529)
T 1jdh_A 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEG 516 (529)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSSHH
T ss_pred HHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhcCCCHH
Confidence 0111000000000111 23568888899998999999999999987632 11111111 2345555555555556
Q ss_pred HHHHHHHHHHHH
Q 005686 536 NLRIVYDAIGTL 547 (683)
Q Consensus 536 ~~~~~~~~l~~l 547 (683)
++..+..++..+
T Consensus 517 v~~~a~~aL~~l 528 (529)
T 1jdh_A 517 VATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666666554
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.67 E-value=3.9e-14 Score=151.20 Aligned_cols=360 Identities=15% Similarity=0.156 Sum_probs=246.8
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhc
Q 005686 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 132 l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~ 210 (683)
.++.+.+.+.++++..+..++..+..+...-....... -.-..++|.|+++|.. .++.++..|..+|..++..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~------ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~ 150 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN------IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 150 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHH------HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHH------HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence 47788889999999999999999988764322110000 1124688999999975 5689999999999999876
Q ss_pred cchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHHhhcCCC-----hHHHHHHh
Q 005686 211 MPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTD-----DDVALEAC 283 (683)
Q Consensus 211 ~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~-----~~vr~~a~ 283 (683)
.+......+. ..++.|..++.+++.+++..++.+|..++...+..-...+ ...++.++..+...+ ..+...+.
T Consensus 151 ~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 5443222222 4688899999999999999999999999876543211111 123444555554432 33556677
Q ss_pred hHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccc
Q 005686 284 EFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (683)
Q Consensus 284 ~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~ 363 (683)
..+..++....... -......++|.+...+...+.
T Consensus 231 ~~L~nl~~~~~~~~-~~~~~~~~lp~L~~LL~~~~~-------------------------------------------- 265 (529)
T 3tpo_A 231 WTLSNLCRNKNPAP-PLDAVEQILPTLVRLLHHNDP-------------------------------------------- 265 (529)
T ss_dssp HHHHHHHCCCTTCC-CHHHHHHHHHHHHHHTTSSCH--------------------------------------------
T ss_pred HHHHHHHhcccchh-hHHHHhhHHHHHHHHhcCCcH--------------------------------------------
Confidence 77788876522111 112334566776665543221
Q ss_pred cccHHHHHHHHHHHHHhhcCc--c--chhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHH
Q 005686 364 VWNLRKCSAAALDVLSNVFGD--E--ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFL 438 (683)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~--~--~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l 438 (683)
.++..+..+|..++....+ . .-..+++.+.+++.+++ +.++..++.+++.++.+........+ ...++.+
T Consensus 266 --~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~---~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L 340 (529)
T 3tpo_A 266 --EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF 340 (529)
T ss_dssp --HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGH
T ss_pred --HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC---hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHH
Confidence 2567788888888765432 1 12357888889999888 99999999999999877643322222 2367778
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHH
Q 005686 439 IPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR 517 (683)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~ 517 (683)
...+.++++.+|..|+|+|+.++..-... ..... ..+++.++..+.+.+..++..|+++|.+++......-..+
T Consensus 341 ~~LL~~~~~~i~~~a~~aL~nl~~~~~~~-----~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~ 415 (529)
T 3tpo_A 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQ-----IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVY 415 (529)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTSCHHH-----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcccHHH-----HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 88899999999999999999998643221 11111 3478899999999999999999999999987654333233
Q ss_pred HH--HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhc
Q 005686 518 LE--IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (683)
Q Consensus 518 l~--~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (683)
+- .+++.|+.++...+.+.+..++++|..+.....
T Consensus 416 l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 416 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 32 357777888887777777889999999887643
No 46
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.65 E-value=8.4e-14 Score=147.69 Aligned_cols=385 Identities=12% Similarity=0.091 Sum_probs=255.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh---cCC--------ChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhcc
Q 005686 17 ICRLLEQQISPSSTADKSQIWQQLQQYS---QFP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (683)
Q Consensus 17 l~~~l~~~~s~~~~~~r~~A~~~L~~~~---~~p--------~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~ 85 (683)
+.++++.+.|.|.+ .+.+|.+.++++. ++| +.++.|.++|.. +.++.++..|+-.|.|....
T Consensus 59 i~~~v~~l~s~d~~-~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~--~~~~~lq~~Aa~aL~nias~---- 131 (510)
T 3ul1_B 59 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIASG---- 131 (510)
T ss_dssp HHHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHTS----
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC--CCCHHHHHHHHHHHHHHhcC----
Confidence 56677788889999 9999999999853 234 467889998874 66789999999999876532
Q ss_pred CCHhHHHH-----HHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCC----hHHHHHHHHHHhccCCh-----hHHhHH
Q 005686 86 MSPSNQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG----WLELLQALVTCLDSNDI-----NHMEGA 151 (683)
Q Consensus 86 l~~~~~~~-----i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~----~~~l~~~l~~~l~s~~~-----~~r~~a 151 (683)
+++.+.. ..+.|+..|.+++..+|..++.+|+.|+....... -.+.++.+...+.+.+. ..+..+
T Consensus 132 -~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a 210 (510)
T 3ul1_B 132 -TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210 (510)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH
Confidence 3344333 34567788889999999999999999986431100 01235677777776543 345567
Q ss_pred HHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH-HHHHHHHHhhh
Q 005686 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLS 230 (683)
Q Consensus 152 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~ 230 (683)
..++..++........ -.....++|.+...+.+++++++..|+.++..+....+....... ..+++.|..++
T Consensus 211 ~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 211 TWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHHHHCCCSSCCC-------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhhcccchhH-------HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh
Confidence 7777777764332111 123467899999999999999999999999998865432211111 13577788888
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHH
Q 005686 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (683)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~ 309 (683)
.+++..++..++.++..++..........+. ..++.+...+.+.++.++..|+.++..++.. .....
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~--~~~~~---------- 351 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG--RQDQI---------- 351 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS--CHHHH----------
T ss_pred cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC--cHHHH----------
Confidence 8889999999999999887654432211111 2333444456667777777777777776543 10000
Q ss_pred HHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhh
Q 005686 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT 389 (683)
Q Consensus 310 l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 389 (683)
... .-..
T Consensus 352 -----------------------------------------------------------~~v--------------~~~g 358 (510)
T 3ul1_B 352 -----------------------------------------------------------QQV--------------VNHG 358 (510)
T ss_dssp -----------------------------------------------------------HHH--------------HHTT
T ss_pred -----------------------------------------------------------HHH--------------HhcC
Confidence 000 0013
Q ss_pred hHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH--HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhh
Q 005686 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (683)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (683)
++|.+...+.+.+ +.+|..|+++|+.++.+.......++- .+++.++..|.+.++.++..++++|..+.+.....
T Consensus 359 ~i~~Lv~lL~~~~---~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~ 435 (510)
T 3ul1_B 359 LVPFLVGVLSKAD---FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435 (510)
T ss_dssp HHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCC---HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc
Confidence 5677777888888 999999999999988754322222222 26888899999999999999999999998765432
Q ss_pred hCCCcchhh---HHH--HHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 468 IGHQNGREQ---FEK--VLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 468 ~~~~~~~~~---~~~--~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
.....+ +.. .+..+-....+++..|+..|...|.++.
T Consensus 436 ---~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 436 ---GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp ---TCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred ---cchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 011111 111 2344433334567788888888877664
No 47
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.4e-15 Score=143.85 Aligned_cols=209 Identities=17% Similarity=0.161 Sum_probs=169.9
Q ss_pred chhhhHHHHHHHHccCCCCChhhHHHHHHHHHH-HHhcchhhh--hhhHHHHHHHHhhcc-CCCChhHHHHHHHHHHHHH
Q 005686 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGA-IAEGCIKGL--YPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRFS 461 (683)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~-l~~~~~~~~--~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~ 461 (683)
+++.+-+-+.+.+++.+ |+.|.+|+..++. +++++++.. ...+..++..+.+.+ +|.|+.||..|+.+++.++
T Consensus 13 i~~kl~~~f~~~l~s~~---w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la 89 (249)
T 2qk1_A 13 ILDKLPKDFQERITSSK---WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC 89 (249)
T ss_dssp CGGGSCTTHHHHHTCSS---HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred hhhhCChhHHHHhhcCC---HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 33344444667778888 9999999999999 987765433 334467788999999 7999999999999999999
Q ss_pred HHHH-hhhCCCcch-hhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhhHhHHH
Q 005686 462 KFIV-QDIGHQNGR-EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL-APRLEIILQHLMMAFGKYQRRNLR 538 (683)
Q Consensus 462 ~~~~-~~~~~~~~~-~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l-~~~l~~i~~~L~~~l~~~~~~~~~ 538 (683)
+.+. + ... +|...++|.++..+.|..+.|+.++..|+..+++.+.... .+|++.+++.|...+++.++..+.
T Consensus 90 ~~l~~~-----~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~ 164 (249)
T 2qk1_A 90 DKLKTP-----GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRM 164 (249)
T ss_dssp HHHCTT-----TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHH
T ss_pred Hhcccc-----cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHH
Confidence 8886 4 356 8999999999999999999999999999999999885432 235999999999999887777788
Q ss_pred HHHHHHHHHHHHhcc---ccCchhHH-HhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhcc-ccccchHHH
Q 005686 539 IVYDAIGTLADAVGF---ELNQPVYL-DILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPV 607 (683)
Q Consensus 539 ~~~~~l~~l~~~~~~---~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~-~f~~~~~~~ 607 (683)
.++.+|+.++...+. .+. +|+ +.++|.+.+.+.. .++++ ..+.+|++.+++.+|. .|.||++.+
T Consensus 165 ~al~~l~~~~~~~~~~~~~l~--~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 165 ECTQLFNASMKEEKDGYSTLQ--RYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHCCSCSHHHH--HHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHcCCcchhHH--HHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999998773 343 588 9999998887753 34455 4689999999999998 588877764
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.63 E-value=6e-13 Score=142.02 Aligned_cols=385 Identities=13% Similarity=0.093 Sum_probs=256.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHH-hc--CC--------ChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 005686 16 EICRLLEQQISPSSTADKSQIWQQLQQY-SQ--FP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (683)
Q Consensus 16 ~l~~~l~~~~s~~~~~~r~~A~~~L~~~-~~--~p--------~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~ 84 (683)
.+.+++..+.|+|.+ .+.+|.+.+.++ +. +| +.++.|..+|.. +.++.++..|+-.|.+....
T Consensus 77 ~l~~lv~~l~s~d~~-~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~--~~~~~~q~~Aa~aL~nia~~--- 150 (529)
T 3tpo_A 77 SVEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIASG--- 150 (529)
T ss_dssp CHHHHHHHHTSSCHH-HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC--TTCHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHcC---
Confidence 356677788889988 999999999885 22 33 457788888864 67789999999999876532
Q ss_pred cCCHhHH-----HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCC--h--HHHHHHHHHHhccCCh-----hHHhH
Q 005686 85 SMSPSNQ-----QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG--W--LELLQALVTCLDSNDI-----NHMEG 150 (683)
Q Consensus 85 ~l~~~~~-----~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~--~--~~l~~~l~~~l~s~~~-----~~r~~ 150 (683)
+++.. ....+.|+.++.+++..+|..++.+|+.|+....... . .+.++.+..++.+.+. ..+..
T Consensus 151 --~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 151 --TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred --CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 22222 2345667778889999999999999999986431100 0 1235667777765543 34566
Q ss_pred HHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH-HHHHHHHHhh
Q 005686 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLL 229 (683)
Q Consensus 151 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~ 229 (683)
+..++..++........ -.....++|.+...+.+++++++..|+.+|..+....+....... ..+++.|..+
T Consensus 229 a~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHHCCCTTCCC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcccchhh-------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH
Confidence 77777777764432211 123467899999999999999999999999998865432211111 2457778888
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHH
Q 005686 230 SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (683)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~ 308 (683)
+.+++..++..++.+|..++..........+ ...++.+...+.+.++.++..|+.++..++.. .....
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~--~~~~~--------- 370 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG--RQDQI--------- 370 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS--CHHHH---------
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--cHHHH---------
Confidence 8889999999999999988765443221111 12344555566777777888888777777654 11000
Q ss_pred HHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchh
Q 005686 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP 388 (683)
Q Consensus 309 ~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 388 (683)
... . -.
T Consensus 371 ------------------------------------------------------------~~v-------~-------~~ 376 (529)
T 3tpo_A 371 ------------------------------------------------------------QQV-------V-------NH 376 (529)
T ss_dssp ------------------------------------------------------------HHH-------H-------HT
T ss_pred ------------------------------------------------------------HHH-------H-------hc
Confidence 000 0 01
Q ss_pred hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH--HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHh
Q 005686 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (683)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (683)
.++|.+...+.+++ +.+|..|+++|+.++.+.......++- .+++.++..|.+.++.++..++++|..+......
T Consensus 377 g~i~~Lv~lL~~~~---~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 453 (529)
T 3tpo_A 377 GLVPFLVGVLSKAD---FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 453 (529)
T ss_dssp THHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHhcCCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 35667777888888 999999999999988754322222222 2688899999999999999999999999876542
Q ss_pred hhCCCcchhhHHH------HHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 467 DIGHQNGREQFEK------VLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 467 ~~~~~~~~~~~~~------~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
. .....+.. .+..+-....+++..|+..|...|..+.
T Consensus 454 ~----~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 454 L----GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp T----TCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred c----cChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 2 11111111 1333333334567788888888877664
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.62 E-value=1.8e-13 Score=147.08 Aligned_cols=383 Identities=11% Similarity=0.047 Sum_probs=249.2
Q ss_pred HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC----ChHHHHHHHHHHhcc-CChhHHhHHHHHHHHHHhhchhcc
Q 005686 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA----GWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVL 166 (683)
Q Consensus 92 ~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~----~~~~l~~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~~ 166 (683)
......|...+.++++.+|..++.++..++...... .-++.++.+.+.+.+ +++.++..++.+|..++.....
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~-- 93 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG-- 93 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH--
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh--
Confidence 344566777888899999999999999998754211 124678888888865 4889999999999998764221
Q ss_pred ccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHH
Q 005686 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAF 245 (683)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l 245 (683)
... -.-...+|.+.+.+.++++.++..|+.++..++...+....... ...++.+..++.+++++++..++.+|
T Consensus 94 ~~~------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 94 LLA------IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp HHH------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred HHH------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 100 01235789999999999999999999999999866433211111 25688888988888899999998898
Q ss_pred HHHHhhCccchhhhH-HHHHHHHHHhhcCC-ChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhh
Q 005686 246 NLLIEVRPSFLEPHL-RNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (683)
Q Consensus 246 ~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 323 (683)
..++...+..-.... ...++.++..+++. .+..+..+..++..++..+.....+. -...++.++..+...+
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~~~~L~~ll~~~~----- 240 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--EAGGMQALGLHLTDPS----- 240 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH--HTTHHHHHHTTTTSSC-----
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHH--HCCCHHHHHHHHhCCC-----
Confidence 888764332111111 12233344444333 44556667788888876532222111 1245666665554211
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCC
Q 005686 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASG 402 (683)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~ 402 (683)
..++..+..++..++...+. .....++|.+.+.+.+++
T Consensus 241 -----------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~ 279 (529)
T 1jdh_A 241 -----------------------------------------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 279 (529)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC
T ss_pred -----------------------------------------hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC
Confidence 13677788888888877654 445578899999998887
Q ss_pred CCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCC--CChhHHHHHHHHHHHHHHHHHhhhCCCcchhh-HH
Q 005686 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FE 478 (683)
Q Consensus 403 ~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~ 478 (683)
+.+|..++.+|+.++.+..+....... ..++.++..+.+ .++.+|..|+.+|+.++...+.. ....... -.
T Consensus 280 ---~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~i~~~ 354 (529)
T 1jdh_A 280 ---INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA--EMAQNAVRLH 354 (529)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH--HHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH--HHHHHHHHHc
Confidence 999999999999998764322222221 256777777754 44799999999999997532110 0000111 12
Q ss_pred HHHHHHHHHhccCC-ccHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHhhHhH
Q 005686 479 KVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQRRN 536 (683)
Q Consensus 479 ~~l~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~l~~~l-~~i~~~L~~~l~~~~~~~ 536 (683)
..++.+.+.+.+++ +.++..++++|++++..... ..... ..+++.|+..+.+.+...
T Consensus 355 ~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHH
Confidence 35788888888876 48999999999998753211 12222 245666777776544333
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=7e-15 Score=139.80 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=171.1
Q ss_pred cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC-CCChhHHHHHHHHHHHHHHH
Q 005686 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~ 463 (683)
++++.+-+.+.+.+++.+ |..|.+|+..|..+++++++.....+.++++.+...+. |.++.||..|+.+++.++..
T Consensus 11 di~~~l~~~l~~~l~s~~---w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKK---WTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp CCGGGSCTTHHHHHTCSS---HHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHhhhccCC---HHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 445555566777888888 99999999999999987554334455788999999995 99999999999999999998
Q ss_pred HHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 005686 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (683)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~ 543 (683)
+.. ...+|...++|.++..+.|+++.||.+|..++..+++..+ ++.+++.+...+++.++..+..++..
T Consensus 88 l~~-----~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~ 156 (242)
T 2qk2_A 88 LAK-----RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALF 156 (242)
T ss_dssp HGG-----GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred Hhh-----hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 865 3678999999999999999999999999999999987542 46677777888887777777899999
Q ss_pred HHHHHHHhccccCchhHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhccc-cccchHHHHHHHHHHHH
Q 005686 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAG-FTQFAQPVFQRCINIIQ 616 (683)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~~-f~~~~~~~~~~l~~~l~ 616 (683)
|+.++...++.....+|++.++|.+...+.. ...++ ..+.+|++.++..+|.. |.+|++.+-+.-.+.+.
T Consensus 157 l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~ 228 (242)
T 2qk2_A 157 IARALTRTQPTALNKKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIK 228 (242)
T ss_dssp HHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHH
Confidence 9998887765421236999999999888753 33444 46899999999999985 88888876554444443
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.62 E-value=2.6e-11 Score=130.86 Aligned_cols=479 Identities=12% Similarity=0.072 Sum_probs=290.5
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChH
Q 005686 51 NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWL 130 (683)
Q Consensus 51 ~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~ 130 (683)
...+..++ +.+...|+.+-+.+.... .-+++...-+.+.+.+-+.++++.+|..+..+++.+.. +.-.+
T Consensus 77 ~~vvkl~~---s~~~~~Krl~YL~l~~~~-----~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~ 145 (621)
T 2vgl_A 77 MEAVNLLS---SNRYTEKQIGYLFISVLV-----NSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAE 145 (621)
T ss_dssp HHHHHGGG---CSCHHHHHHHHHHHHHSC-----CCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHH
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHc-----cCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHH
Confidence 33444443 668888888877775543 23455555666777778889999999988888888853 34567
Q ss_pred HHHHHHHHHh--ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 005686 131 ELLQALVTCL--DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (683)
Q Consensus 131 ~l~~~l~~~l--~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~ 208 (683)
.+.+.+.+++ .+.++.+|..|+.++..+.+..++.+.. +.+++.+.+.+.|+++.|+.+|+.++..++
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~----------~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM----------GDWTSRVVHLLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC----------CSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc----------hhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 8899999999 8899999999999999999977654321 367888899999999999999999999998
Q ss_pred hccchhhHHhHHHHHHHHHhhhCCC-------------CHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcC-C
Q 005686 209 MLMPSALFVSMDQYLQGLFLLSNDP-------------SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-T 274 (683)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~-------------~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~ 274 (683)
...|..+.+.++.+++.+.+.+... ++-.+..+++.|..+...........+.+++..++..+.+ +
T Consensus 216 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 216 QKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp HHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 7766655555555555555443211 3445566666665554322222233333344433322211 1
Q ss_pred ----------ChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccc
Q 005686 275 ----------DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFH 344 (683)
Q Consensus 275 ----------~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~ 344 (683)
...|...|..++..+.. . .++....+..+...+..++
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~---~----~~~~~~~~~~L~~~L~~~~-------------------------- 342 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDS---E----PNLLVRACNQLGQFLQHRE-------------------------- 342 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCC---C----HHHHHHHHHHHHHHSSCSC--------------------------
T ss_pred ccccccccchHHHHHHHHHHHHHhcCC---c----HHHHHHHHHHHHHHhcCCC--------------------------
Confidence 12455555555555431 1 1233344455544443211
Q ss_pred cccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHc-cCCCCChhhHHHHHHHHHHHHhc
Q 005686 345 SSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEG 422 (683)
Q Consensus 345 ~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~ 422 (683)
.++|..+...+..++...+. ..+....+.+..++. +++ ..+|..++..+..++..
T Consensus 343 --------------------~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d---~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 343 --------------------TNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD---VSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC---HHHHHHHHHHHHHHCCH
T ss_pred --------------------cchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHHcCh
Confidence 14788899999888877653 455666777778888 887 89999999998888753
Q ss_pred chhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHH
Q 005686 423 CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSA 502 (683)
Q Consensus 423 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~a 502 (683)
..+..++..+...+.+.+..+|..++.+++.++..+++ ....++ ..+++.+.+....+...+...
T Consensus 400 ------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~-----~~~~~v----~~Ll~ll~~~~~~v~~ev~~~ 464 (621)
T 2vgl_A 400 ------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV-----DYTWYV----DTILNLIRIAGDYVSEEVWYR 464 (621)
T ss_dssp ------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS-----STHHHH----HHHHHHHHHHGGGSCSHHHHH
T ss_pred ------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-----cHHHHH----HHHHHHHHhhcccchHHHHHH
Confidence 23455666666666677888999999999999887643 234444 444444443333455566666
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHHHhccccC-chhHHHhhhHHHHHHHhcCCCCC
Q 005686 503 FATLEEEAAEELAPRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLADAVGFELN-QPVYLDILMPPLIAKWQQLPNSD 579 (683)
Q Consensus 503 l~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 579 (683)
+..++... +.++.| .+..|...+.+... .....+.-++|..+........ .| ..++..+...+.. ++
T Consensus 465 l~~ii~~~-~~~~~~---~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p---~~~l~~l~~~~~~---~~ 534 (621)
T 2vgl_A 465 VIQIVINR-DDVQGY---AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSP---LIQFNLLHSKFHL---CS 534 (621)
T ss_dssp HHHHHGGG-CSCHHH---HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCH---HHHHHHHHHHHTT---SC
T ss_pred HHHHHhCC-hhHHHH---HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCH---HHHHHHHHHHhcc---CC
Confidence 66665433 344454 34455566655432 2233455667766555443210 01 1223334344432 23
Q ss_pred cch-hhHHhHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHH
Q 005686 580 KDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGL 647 (683)
Q Consensus 580 ~~~-~~~~~~l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l 647 (683)
..+ ..++.++..+....+ - +.+.+..+|+..... + ..+.|+|+.|...+.-+
T Consensus 535 ~~v~~~~Lta~~Kl~~~~p-----~---~~~~i~~~l~~~~~~--~------~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 535 VPTRALLLSTYIKFVNLFP-----E---VKATIQDVLRSDSQL--K------NADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCG-----G---GHHHHHHHHSSHHHH--S------CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCh-----H---HHHHHHHHHHHHhcC--C------CCCHHHHHHHHHHHHHH
Confidence 333 345555555544321 1 223333344332210 0 14678999998877665
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.61 E-value=4.9e-12 Score=136.42 Aligned_cols=437 Identities=11% Similarity=0.084 Sum_probs=266.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHH
Q 005686 19 RLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (683)
Q Consensus 19 ~~l~~~~s~~~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~-~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~ 96 (683)
++++.+.|+|-+ .|+-+.-++..+.+ +|+......+.+.++ .+.++.+|-.|...+.+. ..++..+.+..
T Consensus 78 ~vvkl~~s~~~~-~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i-------~~~e~~~~l~~ 149 (621)
T 2vgl_A 78 EAVNLLSSNRYT-EKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV-------GSREMAEAFAG 149 (621)
T ss_dssp HHHHGGGCSCHH-HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-------CCHHHHHHHTT
T ss_pred HHHHHhcCCCHH-HHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc-------CCHHHHHHHHH
Confidence 455566677877 88888888888654 566554445444422 367889999888777654 34677778888
Q ss_pred HHhhhh--hcCChHHHHHHHHHHHHHHhhcCcCChH--HHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCC
Q 005686 97 ELLPCL--GAADRHIRSTVGTIVSVVVQLGGIAGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (683)
Q Consensus 97 ~Ll~~l--~~~~~~vr~~~~~~l~~i~~~~~~~~~~--~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 172 (683)
.+.+++ .+.++.||+.++.++..+.+..+ +..+ ++++.+.+++.+.++.++.+++.++..++...+..+.+
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~---- 224 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKT---- 224 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTT----
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHH----
Confidence 888898 88999999999999999999753 2222 45667777888999999999999999998765542211
Q ss_pred CCcchhHhhHHHHHH----------------------------hh---c-CCCHHHHHHHHHHHHHHHhcc---c-----
Q 005686 173 LAECPINIFLPRLLQ----------------------------FF---Q-SPHTSLRKLSLGSVNQFIMLM---P----- 212 (683)
Q Consensus 173 ~~~~~~~~i~~~l~~----------------------------~l---~-~~~~~vr~~a~~~l~~~~~~~---~----- 212 (683)
.++.++..+.+ .+ . ..+++.+.....++..++... |
T Consensus 225 ----~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l 300 (621)
T 2vgl_A 225 ----SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKV 300 (621)
T ss_dssp ----HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSH
T ss_pred ----HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 11112221111 11 1 123444443333333332110 0
Q ss_pred -------h-------------hhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc--cchhhhHHHHHHHHHHh
Q 005686 213 -------S-------------ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--SFLEPHLRNLFEYMLQV 270 (683)
Q Consensus 213 -------~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~l~~~~~~~ 270 (683)
. ...+.....++.+..++.++++++|-.++..+..++...+ ..+.+|.. .++.+
T Consensus 301 ~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~----~i~~~ 376 (621)
T 2vgl_A 301 QHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIE----TVINA 376 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHH----HHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHH----HHHHH
Confidence 0 0011123345555666667788899999999998887765 34444444 44445
Q ss_pred hc-CCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCC
Q 005686 271 NK-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (683)
Q Consensus 271 ~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (683)
+. +++..+|..+++.+..++.. . .+..++..+..++...+.
T Consensus 377 L~~d~d~~Ir~~aL~lL~~l~~~----~----Nv~~Iv~eL~~yl~~~d~------------------------------ 418 (621)
T 2vgl_A 377 LKTERDVSVRQRAVDLLYAMCDR----S----NAQQIVAEMLSYLETADY------------------------------ 418 (621)
T ss_dssp HTTCCCHHHHHHHHHHHHHHCCH----H----HHHHHHHHHHHHHHHCCH------------------------------
T ss_pred hccCCCHhHHHHHHHHHHHHcCh----h----hHHHHHHHHHHHHHhcCH------------------------------
Confidence 66 88999999999999999764 1 234445555444432211
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhh
Q 005686 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYP 429 (683)
Q Consensus 350 ~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~ 429 (683)
.+|..+...++.++..++.. ...++..+.+.+.... -.+...++..+..+....+ .+..
T Consensus 419 ----------------~~~~~~v~~I~~la~k~~~~-~~~~v~~Ll~ll~~~~---~~v~~ev~~~l~~ii~~~~-~~~~ 477 (621)
T 2vgl_A 419 ----------------SIREEIVLKVAILAEKYAVD-YTWYVDTILNLIRIAG---DYVSEEVWYRVIQIVINRD-DVQG 477 (621)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHG---GGSCSHHHHHHHHHHGGGC-SCHH
T ss_pred ----------------HHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhhc---ccchHHHHHHHHHHHhCCh-hHHH
Confidence 26777888888888877642 3356666666665433 2344445555555554332 1222
Q ss_pred hHHHHHHHHhhccCCCC--hhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 430 HLSEIVAFLIPLLDDKF--PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 430 ~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
+ .+..+...+.++. ..+...++|.+|.++..+... .......++..+.+.+.+.++.||..++.|+.++.
T Consensus 478 ~---~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~-----~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~ 549 (621)
T 2vgl_A 478 Y---AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD-----PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFV 549 (621)
T ss_dssp H---HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS-----TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhccc-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 2 3444555565543 356667889999999887632 00001245566666777778999999999999987
Q ss_pred HHhcccchHHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHH
Q 005686 508 EEAAEELAPRLEIILQHLMMAFG--KYQRRNLRIVYDAIGTL 547 (683)
Q Consensus 508 ~~~~~~l~~~l~~i~~~L~~~l~--~~~~~~~~~~~~~l~~l 547 (683)
...++ +.+.+..+++ .... +.+.+.+..+.+....+
T Consensus 550 ~~~p~-~~~~i~~~l~---~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 550 NLFPE-VKATIQDVLR---SDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHCGG-GHHHHHHHHS---SHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHChH-HHHHHHHHHH---HHhcCCCCCHHHHHHHHHHHHHH
Confidence 65432 3333322322 2222 33445555665555543
No 53
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6.5e-14 Score=132.32 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=165.1
Q ss_pred cccccHHHHHHHHHHH-HHhhcCc-----cchhhhHHHHHHHH-ccCCCCChhhHHHHHHHHHHHHhcch-hhhh-hhHH
Q 005686 362 VNVWNLRKCSAAALDV-LSNVFGD-----EILPTLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCI-KGLY-PHLS 432 (683)
Q Consensus 362 ~~~~~~r~~a~~~l~~-l~~~~~~-----~~~~~l~~~l~~~l-~~~~~~~~~~r~aal~~l~~l~~~~~-~~~~-~~~~ 432 (683)
+..|.-|+.+...+.. +.+..+. .-+..++..+.+.+ .+.+ ..+|.+|+.+++.++.+.. ..+. +|..
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n---~~v~~~A~~al~~la~~l~~~~f~~~y~~ 103 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN---IQAVALAAQSVELICDKLKTPGFSKDYVS 103 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHHCTTTSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 4579999999999888 8754332 12346788888888 6777 9999999999999999987 7888 9999
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc-
Q 005686 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA- 511 (683)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~- 511 (683)
.++|.++..+.|..+.||.++..++..+++.+.+. ....+++.+++.++..+++.++.+|..++.+|..+++..+
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~----~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL----ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT----CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc----ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999976432 2223488999999999998899999999999999999887
Q ss_pred --ccchHHH-HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhh
Q 005686 512 --EELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (683)
Q Consensus 512 --~~l~~~l-~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 564 (683)
..+.+|+ +.+++.+...+.+.+..++..++++++.+...+|++-.. +|++.+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~-p~l~~L 234 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFV-KTLEHL 234 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGH-HHHHHS
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence 4588999 999999999999888888889999999999999986322 466543
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=1.8e-13 Score=130.02 Aligned_cols=191 Identities=17% Similarity=0.132 Sum_probs=162.5
Q ss_pred cccccHHHHHHHHHHHHHhhcCc---cchhhhHHHHHHHHc-cCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHH
Q 005686 362 VNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAF 437 (683)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~ 437 (683)
+..|..|..+...|..+....++ ..+..+++.+...+. +.+ ..+|.+|+.+++.++...+..+.+|+..++|.
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~---~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ 102 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN---VVLVAMAGKCLALLAKGLAKRFSNYASACVPS 102 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35699999999999999887433 335678888999995 888 99999999999999998888889999999999
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhc--ccch
Q 005686 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--EELA 515 (683)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~--~~l~ 515 (683)
++..+.|+++.||.+|+.++..+.... .++.+++.+...+++.++.+|..++.+|+.++...+ ....
T Consensus 103 ll~~l~d~~~~vr~~a~~aL~~~~~~~-----------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 103 LLEKFKEKKPNVVTALREAIDAIYAST-----------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTTS-----------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 999999999999999999999987632 246788999999999999999999999999887764 2467
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccccCchhHHHhhhHH
Q 005686 516 PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPP 567 (683)
Q Consensus 516 ~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 567 (683)
+|++.+++.+...+++...+++..+.++++.++..+|.+... +|++.+=+.
T Consensus 172 ~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~-~~l~~L~~~ 222 (242)
T 2qk2_A 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVT-PLLADVDPL 222 (242)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHG-GGGTTSCHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHH-HHHHhcCHH
Confidence 999999999999999888888889999999999999976322 466655443
No 55
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.55 E-value=2e-10 Score=129.26 Aligned_cols=288 Identities=12% Similarity=0.150 Sum_probs=190.2
Q ss_pred ccccHHHHHHHHHHHHHhhcCc----cchhhhHHHHHHHHccCCCCC--hhhHHHHHHHHHHHHhcchhhhhhhHHHHHH
Q 005686 363 NVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEA--WKDREAAVLALGAIAEGCIKGLYPHLSEIVA 436 (683)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~--~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~ 436 (683)
..|..+.++..+++.++....+ .+++.+++.+......+.++. ...+...++.+|++.+.... -.++++.++.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~-h~~~L~~vl~ 569 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA-HWKFLKTVVN 569 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh-CHHHHHHHHH
Confidence 4588999999999999877753 567888888887775542111 23444455788877776543 2568888999
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC---CcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhccc
Q 005686 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH---QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (683)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (683)
.++..+.+.++.|+.+||.++..+++.++..+.. ....+|+.+++..+.....+=.+.-...-..|++.++...+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999998864311 1234688888888877766545566667788888888877643
Q ss_pred c--hHHHHHHHHHHHHHHHHhh------------H---hHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhcCC
Q 005686 514 L--APRLEIILQHLMMAFGKYQ------------R---RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP 576 (683)
Q Consensus 514 l--~~~l~~i~~~L~~~l~~~~------------~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 576 (683)
. ..++..+++.+...++..- . +.+..++++...++.++|..+. +++..+.+.+.+.++..+
T Consensus 650 ~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~--~~~~~i~~~~l~~y~~~s 727 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFV--IQLGRIYLDMLNVYKCLS 727 (1073)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHH--HHHHHHHHHHHHHHHHHH
Confidence 3 3455555554444443321 1 2344788888899999999886 788888888777665421
Q ss_pred C--------CC----cc-hhhHHhHHH-----HHHHHhccc------cccchHHHHHHHHHHHHHHHHHhhCCcccCCCC
Q 005686 577 N--------SD----KD-LFPLLECFT-----SIAQALGAG------FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQY 632 (683)
Q Consensus 577 ~--------~~----~~-~~~~~~~l~-----~l~~~~g~~------f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 632 (683)
. +. +. ..+.++++. .+...++.. ...++++++..++.-..+.. |. . -
T Consensus 728 ~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~-----p~--~--r 798 (1073)
T 3gjx_A 728 ENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNV-----PA--A--R 798 (1073)
T ss_dssp HHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSC-----GG--G--C
T ss_pred HHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCC-----cc--c--c
Confidence 0 01 11 112233322 333444542 33456666666554444321 10 0 2
Q ss_pred CchHHHHHHHHHHHHHHHhccchHHhHHhhcCCc
Q 005686 633 DKEFVVCCLDLLSGLAEGLGSGIESLVISLFPNL 666 (683)
Q Consensus 633 ~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~l 666 (683)
++++ +.+++.++..+|..+.++++.++..+
T Consensus 799 ~~ev----L~l~s~iv~k~~~~~~~~~~~il~~v 828 (1073)
T 3gjx_A 799 EPEV----LSTMAIIVNKLGGHITAEIPQIFDAV 828 (1073)
T ss_dssp CTHH----HHHHHHHHHHHGGGTGGGHHHHHHHH
T ss_pred cHHH----HHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3344 88899999999999888888877554
No 56
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.43 E-value=3.1e-11 Score=115.58 Aligned_cols=244 Identities=17% Similarity=0.129 Sum_probs=176.1
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 005686 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (683)
Q Consensus 181 i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 259 (683)
.+|.+++.+.++++.+|..|+.++..+....++....... ..++.+...+.++++.++..++.+|..+....+..-...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4688999999999999999999999998765533222222 468888899998899999999999999987644332222
Q ss_pred HH-HHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCC
Q 005686 260 LR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (683)
Q Consensus 260 l~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~ 338 (683)
.. ..++.++..+.+.+++++..|+.++..++.. ....
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~---------------------------------------- 120 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEA---------------------------------------- 120 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHH----------------------------------------
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHH----------------------------------------
Confidence 21 4566777778888889999999988888753 1100
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHH
Q 005686 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (683)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~ 418 (683)
+... .. ...++.+.+.+.+++ +..|..++.+++.
T Consensus 121 -----------------------------~~~~-------~~-------~~~i~~L~~~l~~~~---~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 121 -----------------------------IKAI-------VD-------AGGVEVLVKLLTSTD---SEVQKEAARALAN 154 (252)
T ss_dssp -----------------------------HHHH-------HH-------TTHHHHHHHHTTCSC---HHHHHHHHHHHHH
T ss_pred -----------------------------HHHH-------HH-------CCCHHHHHHHHcCCC---HHHHHHHHHHHHH
Confidence 0000 00 135566677777777 9999999999999
Q ss_pred HHhcchhhhhhhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhh-HHHHHHHHHHHhccCCccHH
Q 005686 419 IAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRILDTNKRVQ 496 (683)
Q Consensus 419 l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~v~ 496 (683)
++.+......... ...++.++..+.++++.+|..|+++|+.++...+.. .... -..+++.+.+.++++++.+|
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~i~~L~~ll~~~~~~v~ 229 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA-----IKAIVDAGGVEVLQKLLTSTDSEVQ 229 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH-----HHHHHHTTHHHHHHHGGGCSCHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH-----HHHHHHCCCHHHHHHHHCCCcHHHH
Confidence 9886543322222 347889999999999999999999999998632211 1111 13478999999999899999
Q ss_pred HHHHHHHHHHHHHhcccchHH
Q 005686 497 EAACSAFATLEEEAAEELAPR 517 (683)
Q Consensus 497 ~~a~~al~~l~~~~~~~l~~~ 517 (683)
..|+++|.++.........+|
T Consensus 230 ~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 230 KEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHHHHHHHHTCBCCC---
T ss_pred HHHHHHHHHHHcCCCcccccc
Confidence 999999999988765544433
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.36 E-value=4.8e-11 Score=116.17 Aligned_cols=252 Identities=13% Similarity=0.061 Sum_probs=175.2
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc
Q 005686 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 133 ~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (683)
++.+...+.++++.+|..++.+|+.+.. +..++.+...+.++++.+|..|+.+|+.+... +
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~ 85 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG------------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-K 85 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC------------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-c
Confidence 5677778888999999999999977531 45677888999999999999999999876432 1
Q ss_pred hhhHHhHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhc
Q 005686 213 SALFVSMDQYLQGLFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (683)
Q Consensus 213 ~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 291 (683)
..+..+++.+.. ..+|+++.+|..++.+|..+....+. +.+.+++.+...+.++++.+|..|+..++.+..
T Consensus 86 ----~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 86 ----KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp ----TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ----ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 123344555553 45678899999999999988755432 234566777778889999999999988887654
Q ss_pred cCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 005686 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (683)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a 371 (683)
. ..++.+...+.+. ++.+|..+
T Consensus 158 ~------------~~~~~L~~~l~d~----------------------------------------------~~~vr~~a 179 (280)
T 1oyz_A 158 K------------ATIPLLINLLKDP----------------------------------------------NGDVRNWA 179 (280)
T ss_dssp -------------CCHHHHHHHHTCS----------------------------------------------SHHHHHHH
T ss_pred H------------HHHHHHHHHHcCC----------------------------------------------CHHHHHHH
Confidence 2 1334443333211 12488888
Q ss_pred HHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHH
Q 005686 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRS 451 (683)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 451 (683)
..+++.+... -+..++.+...+.+++ +.+|..++.+|+.+.. +..++.++..++|++ ||.
T Consensus 180 ~~aL~~~~~~-----~~~~~~~L~~~l~d~~---~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~~--vr~ 239 (280)
T 1oyz_A 180 AFAININKYD-----NSDIRDCFVEMLQDKN---EEVRIEAIIGLSYRKD----------KRVLSVLCDELKKNT--VYD 239 (280)
T ss_dssp HHHHHHHTCC-----CHHHHHHHHHHTTCSC---HHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSSS--CCH
T ss_pred HHHHHhhccC-----cHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCC----------HhhHHHHHHHhcCcc--HHH
Confidence 8888776311 2356777888888887 9999999999988763 123566666777754 888
Q ss_pred HHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhcc-CCccHHHHHHHHHH
Q 005686 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFA 504 (683)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~v~~~a~~al~ 504 (683)
.|+++|+.+.. +..++.|.+.+.+ +++.++..+..++.
T Consensus 240 ~a~~aL~~i~~---------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 240 DIIEAAGELGD---------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHHCC---------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhcCc---------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 99999988742 1345666677764 45667777666654
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.35 E-value=2.2e-10 Score=119.34 Aligned_cols=374 Identities=13% Similarity=0.105 Sum_probs=215.9
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc
Q 005686 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 133 ~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~ 212 (683)
+|.+..+++++++.++..|+.+|..++...... ... -.-...+|.+++.+.++++.++..|..+|..+....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-~~~------i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-KQQ------VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-HHH------HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-HHH------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 577888888899999999999999988543221 000 0124678999999999999999999999999987533
Q ss_pred hhhHHhHH--HHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCccchhh-hHHHHHHHHHHhh--------cC-------
Q 005686 213 SALFVSMD--QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEP-HLRNLFEYMLQVN--------KD------- 273 (683)
Q Consensus 213 ~~~~~~~~--~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~l~~~~~~~~--------~~------- 273 (683)
+. ...+. ..++.|..++. +++++++..++.+|..++.. +. .+. .+...++.++..+ .+
T Consensus 77 ~~-k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 77 TN-KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HH-HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred HH-HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchhcc
Confidence 22 22221 35778888887 77899999999999999876 22 111 1224455555554 11
Q ss_pred -CChHHHHHHhhHHHHhhccCCchhhHHhhh--hhhHHHHHhhcccCh----hhhh----------hhhhc-ccCCCCCc
Q 005686 274 -TDDDVALEACEFWHSYFEAQLPHENLKEFL--PRLVPVLLSNMIYAD----DDES----------LVEAE-EDESLPDR 335 (683)
Q Consensus 274 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l--~~l~~~l~~~l~~~~----~d~~----------~~~~~-~~e~~~~~ 335 (683)
.+.++...|..++.+++..+ +...... +.+++.|+..+.... .+.+ .+... +.+ .+.+
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~~---~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~-~~~~ 229 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSAD---AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE-VPTR 229 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSH---HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH-SCCH
T ss_pred cccHHHHHHHHHHHHHHccCH---HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhcc-Ccch
Confidence 24567779999999998752 2112222 145555554443210 0000 00000 000 0000
Q ss_pred cCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh---------------c--Ccc--chhhhHHHHHH
Q 005686 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV---------------F--GDE--ILPTLMPVIQA 396 (683)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~---------------~--~~~--~~~~l~~~l~~ 396 (683)
...+.+.. + ... .......++...... . +-+ .-...++.+..
T Consensus 230 ~~~~~~~~---~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 290 (457)
T 1xm9_A 230 YRQLEYNA---R----NAY------------TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290 (457)
T ss_dssp HHHHHHTC-----------------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHH
T ss_pred hhhccccc---c----ccc------------ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHH
Confidence 00000000 0 000 000001111111100 0 001 11345666667
Q ss_pred HHccCCCCChhhHHHHHHHHHHHHhcchh---hh-hhhH--HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC
Q 005686 397 KLSASGDEAWKDREAAVLALGAIAEGCIK---GL-YPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (683)
Q Consensus 397 ~l~~~~~~~~~~r~aal~~l~~l~~~~~~---~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (683)
.+.+.. +...+++|+++|+.++.+... .+ ...+ ...+|.+++.+.+.+..|+..|+|+|+.++..-.
T Consensus 291 lL~~~~--~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~----- 363 (457)
T 1xm9_A 291 LMGKSK--KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL----- 363 (457)
T ss_dssp HHHHCC--CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-----
T ss_pred HHhhcC--CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH-----
Confidence 776532 189999999999999876432 22 1222 2468999999999999999999999999987432
Q ss_pred CcchhhHHHHHHHHHHHhccCCc------cHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHh-hHhHHHHHHH
Q 005686 471 QNGREQFEKVLMGLLKRILDTNK------RVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKY-QRRNLRIVYD 542 (683)
Q Consensus 471 ~~~~~~~~~~l~~l~~~l~d~~~------~v~~~a~~al~~l~~~~~~~l~~~l-~~i~~~L~~~l~~~-~~~~~~~~~~ 542 (683)
.....-...++.|++.|...++ .+...++.+|.+++....+...... ...++.|..++... +.+..+.+..
T Consensus 364 -~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~ 442 (457)
T 1xm9_A 364 -LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp -GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 1222335688999999987543 4777888898888754322111111 24566666666665 5556666666
Q ss_pred HHHHH
Q 005686 543 AIGTL 547 (683)
Q Consensus 543 ~l~~l 547 (683)
+|..+
T Consensus 443 ~L~~~ 447 (457)
T 1xm9_A 443 LLSDM 447 (457)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66654
No 59
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.34 E-value=3.4e-10 Score=108.25 Aligned_cols=239 Identities=17% Similarity=0.130 Sum_probs=174.7
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc
Q 005686 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 132 l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (683)
-++.+.+.+.++++.+|..++.+|..++....+.... -.-...++.+++.+.+++..+|..++.++..+....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-------~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-------IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-------HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 3678888999989999999999999998766532110 012367899999999999999999999999998654
Q ss_pred chhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHHhhcCCChHHHHHHhhHHHHh
Q 005686 212 PSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (683)
Q Consensus 212 ~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 289 (683)
+........ ..++.+..++.++++.++..++.+|..++...+....... ...++.++..+.+.++.++..++.++..+
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 332222121 4678888888889999999999999999865544322222 24566777778888888999999988888
Q ss_pred hccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 005686 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (683)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~ 369 (683)
+.. ..... .
T Consensus 156 ~~~--~~~~~---------------------------------------------------------------------~ 164 (252)
T 4hxt_A 156 ASG--PDEAI---------------------------------------------------------------------K 164 (252)
T ss_dssp TTS--CHHHH---------------------------------------------------------------------H
T ss_pred HcC--CHHHH---------------------------------------------------------------------H
Confidence 764 10000 0
Q ss_pred HHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCCChh
Q 005686 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPL 448 (683)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~ 448 (683)
. +. -...++.+.+.+.+++ +.+|..++.+++.++.+.++...... ..+++.++..++++++.
T Consensus 165 ~-------~~-------~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 165 A-------IV-------DAGGVEVLVKLLTSTD---SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp H-------HH-------HTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred H-------HH-------HCcCHHHHHHHHCCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHH
Confidence 0 00 0135666777777777 99999999999999986544332222 23788999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005686 449 IRSISCWTLSRFSKFIV 465 (683)
Q Consensus 449 vr~~a~~~l~~l~~~~~ 465 (683)
+|..|+++|+.++....
T Consensus 228 v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 228 VQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999987643
No 60
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.34 E-value=1.5e-09 Score=113.85 Aligned_cols=363 Identities=13% Similarity=0.107 Sum_probs=225.4
Q ss_pred cCChHH-HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHH
Q 005686 126 IAGWLE-LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (683)
Q Consensus 126 ~~~~~~-l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l 204 (683)
+..|.+ -++.+.+++.++++.++..|..+|..++......-.. -.-...+|.|++.|.+++..++..|+.+|
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~-------V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL 114 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTD-------VRKLKGIPVLVGLLDHPKKEVHLGACGAL 114 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHH-------HHHcCCcHHHHHHHCCCCHHHHHHHHHHH
Confidence 445533 3788889999999999999999999988654432110 01135689999999999999999999999
Q ss_pred HHHHhccchhhHHhHH--HHHHHHHhhhCC-CCHHHHHHHHHHHHHHHhhCc---cchhhhHHHHHHHHHHh--------
Q 005686 205 NQFIMLMPSALFVSMD--QYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRP---SFLEPHLRNLFEYMLQV-------- 270 (683)
Q Consensus 205 ~~~~~~~~~~~~~~~~--~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~---~~~~~~l~~l~~~~~~~-------- 270 (683)
..+...........+. ..++.|+.++.. .+..+++.+..+|..+..... ..+..-++.++..+..-
T Consensus 115 ~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 115 KNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred HHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccc
Confidence 9998642122222221 356777777764 567889999989988876322 12223344444433210
Q ss_pred ------hcCCChHHHHHHhhHHHHhhccCCc-hhhHHhhhhhhHHHHHhhcccC----hhhhhhhhhcccCCCCCccCCC
Q 005686 271 ------NKDTDDDVALEACEFWHSYFEAQLP-HENLKEFLPRLVPVLLSNMIYA----DDDESLVEAEEDESLPDRDQDL 339 (683)
Q Consensus 271 ------~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~~~l~~~----~~d~~~~~~~~~e~~~~~~~~~ 339 (683)
....+.+++..|..+|.+++..... +..+.. ...+++.|+..+... +.+.
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~------------------ 255 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDS------------------ 255 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSC------------------
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccH------------------
Confidence 1123578999999999999875211 222221 123444444333210 0000
Q ss_pred CcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh--------------------------hcCc-cc--hhhh
Q 005686 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN--------------------------VFGD-EI--LPTL 390 (683)
Q Consensus 340 ~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~--------------------------~~~~-~~--~~~l 390 (683)
.....+..+|..|+. ..+. +. -+..
T Consensus 256 --------------------------~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~ 309 (584)
T 3l6x_A 256 --------------------------KLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEV 309 (584)
T ss_dssp --------------------------HHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHH
T ss_pred --------------------------HHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccH
Confidence 011112222221111 1111 11 1345
Q ss_pred HHHHHHHHcc-CCCCChhhHHHHHHHHHHHHhcch---hhhhhhH--HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHH
Q 005686 391 MPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCI---KGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (683)
Q Consensus 391 ~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (683)
++.+...+.. .+ +.++++|+.+|..++.+.. ..+...+ ...+|.++..|.+.+..|+..|+++|+.++...
T Consensus 310 v~~Ll~LL~~s~~---~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 310 VRIYISLLKESKT---PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHCCC---HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCCC---HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 6677777753 45 8999999999999987542 1222223 357999999999999999999999999998743
Q ss_pred HhhhCCCcchhhHHHHHHHHHHHhccC--------CccHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHh--h
Q 005686 465 VQDIGHQNGREQFEKVLMGLLKRILDT--------NKRVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKY--Q 533 (683)
Q Consensus 465 ~~~~~~~~~~~~~~~~l~~l~~~l~d~--------~~~v~~~a~~al~~l~~~~~~~l~~~l-~~i~~~L~~~l~~~--~ 533 (683)
. .....-...+|.|+..|.+. +..++..|+.+|++++....+..+... ...++.|+.++... .
T Consensus 387 ~------~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~ 460 (584)
T 3l6x_A 387 R------NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460 (584)
T ss_dssp S------CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSC
T ss_pred h------HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCC
Confidence 2 22333467899999998865 246788899999988743322222222 24677777777764 4
Q ss_pred HhHHHHHHHHHHHHHH
Q 005686 534 RRNLRIVYDAIGTLAD 549 (683)
Q Consensus 534 ~~~~~~~~~~l~~l~~ 549 (683)
....+.+..+|..+..
T Consensus 461 ~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 461 EKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHc
Confidence 5666777777777753
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.32 E-value=1.9e-10 Score=110.00 Aligned_cols=236 Identities=16% Similarity=0.145 Sum_probs=170.8
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc
Q 005686 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 132 l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (683)
.++.+...+.++++.++..++.+|..+......... . -.-...+|.+++.+.++++.+|..|+.+|..+....
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~-~------~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQ-A------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHH-H------HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHH-H------HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 367777778889999999999999766554222111 0 012467899999999999999999999999998754
Q ss_pred chhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHHhhcCCChHHHHHHhhHHHHh
Q 005686 212 PSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (683)
Q Consensus 212 ~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 289 (683)
+......+. ..++.+..++.++++.++..++.+|..+............ ...++.++..+.+.++.++..|+.++..+
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 433222222 3688899999999999999999999999876554322222 24667777788888888999999888888
Q ss_pred hccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 005686 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (683)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~ 369 (683)
+... .... .
T Consensus 166 ~~~~--~~~~---------------------------------------------------------------------~ 174 (252)
T 4db8_A 166 ASGG--NEQI---------------------------------------------------------------------Q 174 (252)
T ss_dssp TTSC--HHHH---------------------------------------------------------------------H
T ss_pred HcCC--hHHH---------------------------------------------------------------------H
Confidence 7641 0000 0
Q ss_pred HHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChh
Q 005686 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPL 448 (683)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~ 448 (683)
. +. -..+++.+.+.+.+++ +.+|..++.+|+.++.+.++....... .+++.+...+.+.++.
T Consensus 175 ~-------~~-------~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 237 (252)
T 4db8_A 175 A-------VI-------DAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 237 (252)
T ss_dssp H-------HH-------HTTCHHHHHHGGGCSS---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSH
T ss_pred H-------HH-------HCCCHHHHHHHHCCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHH
Confidence 0 00 0145667777888877 999999999999998765543333333 3789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005686 449 IRSISCWTLSRFSK 462 (683)
Q Consensus 449 vr~~a~~~l~~l~~ 462 (683)
+|..|+++|+.++.
T Consensus 238 v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 238 IQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998864
No 62
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.32 E-value=1.6e-10 Score=112.48 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=162.2
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 005686 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (683)
Q Consensus 180 ~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 259 (683)
..++.++..|.++++.+|..|+.+|+.+.. +..++.+...+.++++.+|..++.+|..+.... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~ 87 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KC 87 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TT
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----cc
Confidence 346788899999999999999999988752 234666777788999999999999988764321 12
Q ss_pred HHHHHHHHHH-hhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCC
Q 005686 260 LRNLFEYMLQ-VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (683)
Q Consensus 260 l~~l~~~~~~-~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~ 338 (683)
++.+++.+.. ...++++.+|..++..++.+.... . .+.+.+++.+...+.+.
T Consensus 88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~--~----~~~~~~~~~L~~~l~d~--------------------- 140 (280)
T 1oyz_A 88 EDNVFNILNNMALNDKSACVRATAIESTAQRCKKN--P----IYSPKIVEQSQITAFDK--------------------- 140 (280)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC--G----GGHHHHHHHHHHHTTCS---------------------
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC--C----cccHHHHHHHHHHhhCC---------------------
Confidence 3445555542 457889999999999999886531 1 12234455555444321
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHH
Q 005686 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (683)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~ 418 (683)
++.+|..+..+++.+.. +..++.+.+.+.+++ +.+|..++.+++.
T Consensus 141 -------------------------~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 141 -------------------------STNVRRATAFAISVIND-------KATIPLLINLLKDPN---GDVRNWAAFAINI 185 (280)
T ss_dssp -------------------------CHHHHHHHHHHHHTC----------CCHHHHHHHHTCSS---HHHHHHHHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCC---HHHHHHHHHHHHh
Confidence 13588888888776532 246777888888888 9999999999998
Q ss_pred HHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHH
Q 005686 419 IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEA 498 (683)
Q Consensus 419 l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~ 498 (683)
+.... +..++.+...++|+++.||..|+++|+.+.. +..++.|...+.|+ .||..
T Consensus 186 ~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---------------~~~~~~L~~~l~d~--~vr~~ 240 (280)
T 1oyz_A 186 NKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---------------KRVLSVLCDELKKN--TVYDD 240 (280)
T ss_dssp HTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---------------GGGHHHHHHHHTSS--SCCHH
T ss_pred hccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---------------HhhHHHHHHHhcCc--cHHHH
Confidence 75321 3467788888999999999999999998851 12456666677764 48899
Q ss_pred HHHHHHHH
Q 005686 499 ACSAFATL 506 (683)
Q Consensus 499 a~~al~~l 506 (683)
|+.+|+.+
T Consensus 241 a~~aL~~i 248 (280)
T 1oyz_A 241 IIEAAGEL 248 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998876
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.28 E-value=1e-10 Score=111.88 Aligned_cols=236 Identities=15% Similarity=0.096 Sum_probs=173.8
Q ss_pred CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcC
Q 005686 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (683)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~ 125 (683)
.+..++.+...|. +.++++|..|+..|++.+...-.....-......+.|++.+.++++.+|..++.+++.++....
T Consensus 10 ~~~~~~~~~~~L~---s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 10 HGSELPQMTQQLN---SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp TTCSHHHHHHHHH---SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred ccchHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 3455677888786 5688899999999988776521111111223455678888888889999999999999987431
Q ss_pred c--CC--hHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHH
Q 005686 126 I--AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSL 201 (683)
Q Consensus 126 ~--~~--~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~ 201 (683)
. .. -.+.++.+.+.++++++.+|..++.+|+.++......... -.-...+|.+.+.+.++++.+|..|+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------~~~~~~i~~L~~lL~~~~~~v~~~a~ 159 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA-------VIDAGALPALVQLLSSPNEQILQEAL 159 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH-------HHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH-------HHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 1 11 1236889999999999999999999999998765432110 01245889999999999999999999
Q ss_pred HHHHHHHhccchhhHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcCCChHHH
Q 005686 202 GSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVA 279 (683)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~vr 279 (683)
.++..+....+....... ...++.+..++.++++.++..++.+|..++...+......+. ..++.+...+.+.++++|
T Consensus 160 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 239 (252)
T 4db8_A 160 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 239 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHH
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHH
Confidence 999999875443222211 246788888888899999999999999998665544333333 467777888888899999
Q ss_pred HHHhhHHHHhhc
Q 005686 280 LEACEFWHSYFE 291 (683)
Q Consensus 280 ~~a~~~l~~l~~ 291 (683)
..|..++..+++
T Consensus 240 ~~A~~~L~~l~~ 251 (252)
T 4db8_A 240 KEAQEALEKLQS 251 (252)
T ss_dssp HTHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999988864
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.22 E-value=3.2e-09 Score=110.60 Aligned_cols=378 Identities=13% Similarity=0.051 Sum_probs=220.9
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCCh-----HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCC
Q 005686 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (683)
Q Consensus 96 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~-----~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (683)
+.++..|.++++.++..++.++..++... +..+ .+.+|.|.++++++++.++..|..+|..++...++.-. .
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~-~- 81 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL-E- 81 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH-H-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH-H-
Confidence 45677888889999999999999988543 2223 33589999999999999999999999999875332210 0
Q ss_pred CCCCcchhHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhh--------CC--------C
Q 005686 171 PGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS--------ND--------P 233 (683)
Q Consensus 171 ~~~~~~~~~~i~~~l~~~l~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--------~~--------~ 233 (683)
-.-...+|.+++.+. +++++++..|..+|..+... ++.-...+...++.|..++ .+ .
T Consensus 82 -----i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 -----TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp -----HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred -----HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 001456899999999 78999999999999999876 3221112225667777766 22 2
Q ss_pred CHHHHHHHHHHHHHHHhhCccc---hh---hhHHHHHHHHHHhh--cCCChHHHHHHhhHHHHhhcc-----CCchhhHH
Q 005686 234 SAEVRKLVCAAFNLLIEVRPSF---LE---PHLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEA-----QLPHENLK 300 (683)
Q Consensus 234 ~~~~~~~~~~~l~~l~~~~~~~---~~---~~l~~l~~~~~~~~--~~~~~~vr~~a~~~l~~l~~~-----~~~~~~~~ 300 (683)
+..+...++.+|..++.. ++. +. .-++.++.++.... .+.+..++..|+..+..++.. +.....+.
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 456667899999988865 321 11 23344444443221 123445666777767666522 00000000
Q ss_pred hhhhhhHH--HHHhhcccChhhh--hhhhhc-ccC-CCCCccCC------CCcccccccCCCCCCCCCCCccccccccHH
Q 005686 301 EFLPRLVP--VLLSNMIYADDDE--SLVEAE-EDE-SLPDRDQD------LKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (683)
Q Consensus 301 ~~l~~l~~--~l~~~l~~~~~d~--~~~~~~-~~e-~~~~~~~~------~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r 368 (683)
+....... .....+....... ..++.. .++ ..+.+.+. ++++..... ......++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~-------------~~~~~~~~ 301 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG-------------KSKKDATL 301 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH-------------HCCCHHHH
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHh-------------hcCCHHHH
Confidence 00000000 0000000000000 000000 000 00000000 000000000 00011367
Q ss_pred HHHHHHHHHHHhhcCc---cc----h--hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhh-HHHHHHHH
Q 005686 369 KCSAAALDVLSNVFGD---EI----L--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPH-LSEIVAFL 438 (683)
Q Consensus 369 ~~a~~~l~~l~~~~~~---~~----~--~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~~~l~~~l 438 (683)
..+..+|..++...+. .+ + ...+|.+.+++.+++ .+++..|+++|+.++.... .... -...+|.+
T Consensus 302 e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~---~~v~~~A~~aL~nls~~~~--~~~~i~~~~i~~L 376 (457)
T 1xm9_A 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN---SDVVRSGASLLSNMSRHPL--LHRVMGNQVFPEV 376 (457)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC---HHHHHHHHHHHHHHHTSGG--GHHHHHHHTHHHH
T ss_pred HHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC---HhHHHHHHHHHHHHhcCHH--HHHHHHHhhhHHH
Confidence 7788888888764432 11 1 357899999999988 9999999999999987532 2222 23478888
Q ss_pred hhccCCCC------hhHHHHHHHHHHHHHHHHHhhhCCCcchhhH--HHHHHHHHHHhccC-CccHHHHHHHHHHHHH
Q 005686 439 IPLLDDKF------PLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDT-NKRVQEAACSAFATLE 507 (683)
Q Consensus 439 ~~~l~d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~-~~~v~~~a~~al~~l~ 507 (683)
+..|.+.+ +.+...++++++.+...-.. ....+ ...++.|...+.+. +..++..|++.|.++.
T Consensus 377 v~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 88888654 35777888999888743221 12222 46788888888887 8899999999998765
No 65
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.22 E-value=8.9e-09 Score=107.92 Aligned_cols=351 Identities=15% Similarity=0.047 Sum_probs=223.3
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCCh----HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhc-hhccccCC
Q 005686 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDSNDINHMEGAMDALSKICEDI-PQVLDSDV 170 (683)
Q Consensus 96 ~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~----~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~-~~~~~~~~ 170 (683)
..|+..|.+.++.++..++..+..++........ ...+|.|.+++.+++..+++.|..+|..++... .+. ...
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n-k~~- 128 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN-KIA- 128 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH-HHH-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH-HHH-
Confidence 4566778888899999999999999864322111 235799999999999999999999999998742 221 100
Q ss_pred CCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhh------------------C
Q 005686 171 PGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS------------------N 231 (683)
Q Consensus 171 ~~~~~~~~~~i~~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------------------~ 231 (683)
-.-...+|.|+..|.+ ++..++..+..+|..+... +..-.......++.|..++ .
T Consensus 129 -----I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 129 -----IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp -----HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred -----HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 0124578899999987 6789999999999988753 2211111122344444322 1
Q ss_pred CCCHHHHHHHHHHHHHHHhhCcc---chh---hhHHHHHHHHHHhh--cCCChHHHHHHhhHHHHhhcc-----CCchhh
Q 005686 232 DPSAEVRKLVCAAFNLLIEVRPS---FLE---PHLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEA-----QLPHEN 298 (683)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~~~~~~---~~~---~~l~~l~~~~~~~~--~~~~~~vr~~a~~~l~~l~~~-----~~~~~~ 298 (683)
..+++++..+..+|..+....+. .+. ..++.++.++-... .+.+......|+-.|.+++.. +...+.
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 23578999999999999865432 221 12334555444332 234566778888888777643 000000
Q ss_pred HH-----------------hh--hhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCc
Q 005686 299 LK-----------------EF--LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (683)
Q Consensus 299 ~~-----------------~~--l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~ 359 (683)
.. .. -..+++.++..+..+
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s------------------------------------------ 320 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES------------------------------------------ 320 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHC------------------------------------------
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccC------------------------------------------
Confidence 00 00 001122222222110
Q ss_pred cccccccHHHHHHHHHHHHHhhcCc---c---ch--hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhH
Q 005686 360 DIVNVWNLRKCSAAALDVLSNVFGD---E---IL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (683)
Q Consensus 360 ~~~~~~~~r~~a~~~l~~l~~~~~~---~---~~--~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~ 431 (683)
....++..|..+|..++..-+. . .+ ...+|.+.+++.+++ ..++..|+.+|+.++.+.... ...-
T Consensus 321 ---~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~---~~v~~~A~~aL~nLs~~~~~~-~~I~ 393 (584)
T 3l6x_A 321 ---KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH---ERVVKAASGALRNLAVDARNK-ELIG 393 (584)
T ss_dssp ---CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC---HHHHHHHHHHHHHHHTTCSCH-HHHH
T ss_pred ---CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhCChhHH-HHHH
Confidence 0124677888888888654321 1 11 356899999999888 899999999999999865311 1122
Q ss_pred HHHHHHHhhccCCC--------ChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-HHHHHHHHHHhccC--CccHHHHHH
Q 005686 432 SEIVAFLIPLLDDK--------FPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDT--NKRVQEAAC 500 (683)
Q Consensus 432 ~~l~~~l~~~l~d~--------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~d~--~~~v~~~a~ 500 (683)
...+|.++..|.+. +..++..||++|+.++..-... ..... ...++.|+..+.+. .+.++..|+
T Consensus 394 ~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-----~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 394 KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA-----AKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-----HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH-----HHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 45789999998865 3578889999999887432211 11222 35789999998875 688999999
Q ss_pred HHHHHHHH
Q 005686 501 SAFATLEE 508 (683)
Q Consensus 501 ~al~~l~~ 508 (683)
.+|..+..
T Consensus 469 ~vL~nl~~ 476 (584)
T 3l6x_A 469 LVLQTIWG 476 (584)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99999874
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.20 E-value=8.3e-07 Score=94.63 Aligned_cols=428 Identities=12% Similarity=0.097 Sum_probs=256.5
Q ss_pred CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhc--CChHHHHHHHHHHHHHHhh
Q 005686 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQL 123 (683)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~--~~~~vr~~~~~~l~~i~~~ 123 (683)
+.++.+.+.+.+.+ ..+....+.+.-+|... -++...|+.|.+..++.|.+ .+..+|..++.+|..+...
T Consensus 253 ~e~~~~~l~~~~~~--~~~~~~~~a~L~lLsaA------Ci~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~ 324 (778)
T 3opb_A 253 TKGLSKLFKKRVFE--EQDLQFTKELLRLLSSA------CIDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSF 324 (778)
T ss_dssp TTTHHHHHHHHHHS--SCCHHHHHHHHHHHHHH------CCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHhc--ccchHHHHHHHHHHHHH------hCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 45666666555532 33444444444333221 15566677776666665542 3467888888888888765
Q ss_pred c--CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch--hccccCCCCCCcchhHhhHHHHHHhhcC-CCHHHHH
Q 005686 124 G--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP--QVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRK 198 (683)
Q Consensus 124 ~--~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~vr~ 198 (683)
. ......++.+.+.+++.+++...|.-+++.|.++..... +.+.. -..+++.+++.+++ .+..+..
T Consensus 325 ~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~---------d~~~L~~Lv~llk~~~d~s~~Y 395 (778)
T 3opb_A 325 TKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRS---------NESFTEILLTMIKSQKMTHCLY 395 (778)
T ss_dssp GTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHH---------CHHHHHHHHHHHTTTCCTTHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHh---------CHHHHHHHHHHHhCCCCchHHH
Confidence 4 234557789999999988777779999999999865432 22322 25678889999985 6778889
Q ss_pred HHHHHHHHHHhccchhh--HHhHHH---HHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhc
Q 005686 199 LSLGSVNQFIMLMPSAL--FVSMDQ---YLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK 272 (683)
Q Consensus 199 ~a~~~l~~~~~~~~~~~--~~~~~~---~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~ 272 (683)
.++.++..++.+.+... .+.+.. +.+.=..-.+ ++++.....-+..+.. ..+.. ...++.+...+.
T Consensus 396 gal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~------~~l~e--aGvIp~Lv~Ll~ 467 (778)
T 3opb_A 396 GLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE------KYILR--TELISFLKREMH 467 (778)
T ss_dssp HHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH------HHTTT--TTHHHHHHHHGG
T ss_pred HHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH------HHHHH--CcCHHHHHHHHc
Confidence 99999999987754311 112221 1111000000 0111000101111000 11111 125555566777
Q ss_pred CCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCC
Q 005686 273 DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSE 352 (683)
Q Consensus 273 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 352 (683)
+.++.+|..|..++.+++..+..+..+.. ...++.++..+....+.
T Consensus 468 S~s~~~re~A~~aL~nLS~d~~~R~~lvq--qGal~~LL~lL~s~~~~-------------------------------- 513 (778)
T 3opb_A 468 NLSPNCKQQVVRIIYNITRSKNFIPQLAQ--QGAVKIILEYLANKQDI-------------------------------- 513 (778)
T ss_dssp GSCHHHHHHHHHHHHHHHTSGGGHHHHHH--TTHHHHHHHHTTCC-----------------------------------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhcCCCc--------------------------------
Confidence 78899999999999999876333322221 24456666555432110
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHhhc------Cc-cchhhhHHHHHHHHcc-CCCC----------ChhhHHHHHH
Q 005686 353 NPEDDDDDIVNVWNLRKCSAAALDVLSNVF------GD-EILPTLMPVIQAKLSA-SGDE----------AWKDREAAVL 414 (683)
Q Consensus 353 ~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~------~~-~~~~~l~~~l~~~l~~-~~~~----------~~~~r~aal~ 414 (683)
.+ ..|..|+.+|..++... +. ... ..++.+.+.+.. +... .-..+..|+.
T Consensus 514 ------~~-----~~k~~AA~ALArLlis~np~~~f~~~~~~-~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ 581 (778)
T 3opb_A 514 ------GE-----PIRILGCRALTRMLIFTNPGLIFKKYSAL-NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALL 581 (778)
T ss_dssp ------CC-----HHHHHHHHHHHHHHHTSCHHHHSSSSCST-THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHH
T ss_pred ------ch-----HHHHHHHHHHHHHHhcCCHHHHcCCCccc-cchHHHHHHcCCCCCcccccccccccccHHHHHHHHH
Confidence 00 25778888988887443 22 222 567777788762 2210 0134889999
Q ss_pred HHHHHHhcch---hhhhh-hHH--HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH-------HHHH
Q 005686 415 ALGAIAEGCI---KGLYP-HLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-------EKVL 481 (683)
Q Consensus 415 ~l~~l~~~~~---~~~~~-~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-------~~~l 481 (683)
+|+.++.... +.... .+. ..++.+...+.+.+..||.+|+++++.++..... ....++ ..-+
T Consensus 582 ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~-----i~~k~~~~~~~~~~~rL 656 (778)
T 3opb_A 582 ALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT-----IAAKFFNLENPQSLRNF 656 (778)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG-----TGGGTSCCSSHHHHHHH
T ss_pred HHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH-----HHHHHHhhcCchhhccH
Confidence 9999998752 23332 333 3789999999999999999999999999974321 001221 1237
Q ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHH--hhHhHHHHHHHHHHHHHH
Q 005686 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK--YQRRNLRIVYDAIGTLAD 549 (683)
Q Consensus 482 ~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~--~~~~~~~~~~~~l~~l~~ 549 (683)
+.|+..++..+..+|.+|++||..+...........+ ...++.++..+.+ .+...+..++-++.+++.
T Consensus 657 ~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 657 NILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999998643322111111 2466667777777 455556677788888886
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.17 E-value=6.3e-09 Score=114.62 Aligned_cols=291 Identities=14% Similarity=0.230 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHHhhC-ccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhc
Q 005686 236 EVRKLVCAAFNLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (683)
Q Consensus 236 ~~~~~~~~~l~~l~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l 314 (683)
.-+..+...+..++... .....+ ..++..+.+...+.... ..|+..+..+++.......+.||+-.++|.++...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 104 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNA 104 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHh
Confidence 33455666666665533 222222 25666666666665333 78888899999764333456888888888887766
Q ss_pred ccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHH
Q 005686 315 IYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVI 394 (683)
Q Consensus 315 ~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l 394 (683)
.+.+. .+|.+|..+...+...++......++|.+
T Consensus 105 ~dk~~----------------------------------------------~v~~aa~~~~~~~~~~~~~~a~~~~~~~~ 138 (986)
T 2iw3_A 105 GNKDK----------------------------------------------EIQSVASETLISIVNAVNPVAIKALLPHL 138 (986)
T ss_dssp TCSSH----------------------------------------------HHHHHHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred cCCch----------------------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 53221 48999999999999999987778999999
Q ss_pred HHHHccC-CCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcc
Q 005686 395 QAKLSAS-GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (683)
Q Consensus 395 ~~~l~~~-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (683)
..++.+. . |..+.+|+.+++.+++..++.+...+++++|.+..++.|..+.|..+|..++..+|..+.+
T Consensus 139 ~~~~~~~~k---w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n------- 208 (986)
T 2iw3_A 139 TNAIVETNK---WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN------- 208 (986)
T ss_dssp HHHHHHCCC---HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC-------
T ss_pred HHHhccccc---hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC-------
Confidence 9998654 5 9999999999999999888888999999999999999999999999999999999877643
Q ss_pred hhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Q 005686 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (683)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~ 551 (683)
.-+.+.+|.|++++.+++ .| ..+...|+ ... .+-=.|-+.-+++.|...++.......+.+.-.+.+++.-+
T Consensus 209 -~d~~~~~~~~~~~~~~p~-~~-~~~~~~l~---~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 209 -KDIERFIPSLIQCIADPT-EV-PETVHLLG---ATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp -TTTGGGHHHHHHHHHCTT-HH-HHHHHHHT---TCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred -cchhhhHHHHHHHhcChh-hh-HHHHHHhh---cCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence 334556677888888763 23 22333332 211 22234677778888888887665444455555667776655
Q ss_pred ccccCchhHHHhhhHHHHHHHhcCCCCCcch----hhHHhHHHHHHH
Q 005686 552 GFELNQPVYLDILMPPLIAKWQQLPNSDKDL----FPLLECFTSIAQ 594 (683)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~l~~l~~ 594 (683)
.+...-.+|++.++|.+........ +++. .+++.++.....
T Consensus 283 ~~~~~~~~f~~~l~p~~~~~~~~~~--~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 283 EDPQVIAPFLGKLLPGLKSNFATIA--DPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp CCHHHHHHHHTTTHHHHHHHTTTCC--SHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHhhhhhhhhhHHHHHhhccC--CHHHHHHHHHHHHHHHHhhc
Confidence 4332223699999998877766653 5554 245555555443
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.16 E-value=1.1e-09 Score=101.39 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=57.9
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhh
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (683)
+..++.+.+.+.++++.+|..|+..|+.+... ..++.|...+.++++.+|..++.+|..+...
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~------- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 45667777788888888888888887765421 1245555666677777777777777665321
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHhhHHHHhh
Q 005686 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (683)
Q Consensus 259 ~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 290 (683)
..++.+...+.++++.+|..|+..+..+.
T Consensus 81 ---~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 81 ---RAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp ---GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 12233334556666677777776666553
No 69
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.15 E-value=2.9e-08 Score=83.19 Aligned_cols=215 Identities=20% Similarity=0.307 Sum_probs=161.5
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhH
Q 005686 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (683)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 299 (683)
..++..++..++|.-+-|++.++..+..++..+++...|.+..++-.+ -++..-......-..++.+++. .++
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~---~ksEaIpltqeIa~a~G~la~i--~Pe-- 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLL---KKSEAIPLTQEIAKAFGQMAKE--KPE-- 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH---HHCCSHHHHHHHHHHHHHHHHH--CHH--
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH---hhcccCchHHHHHHHHhHHHHh--CHH--
Confidence 357888899999988999999999999999999999988777766643 2333333334445567777664 333
Q ss_pred HhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHH
Q 005686 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (683)
Q Consensus 300 ~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~ 379 (683)
.+..++|.++......++ .+|.....+|+.++
T Consensus 104 --~v~~vVp~lfanyrigd~----------------------------------------------kikIn~~yaLeeIa 135 (253)
T 2db0_A 104 --LVKSMIPVLFANYRIGDE----------------------------------------------KTKINVSYALEEIA 135 (253)
T ss_dssp --HHHHHHHHHHHHSCCCSH----------------------------------------------HHHHHHHHHHHHHH
T ss_pred --HHHhhHHHHHHHHhcCCc----------------------------------------------cceecHHHHHHHHH
Confidence 345566776654433221 35666778888888
Q ss_pred hhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 005686 380 NVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (683)
Q Consensus 380 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (683)
...|. ..+.+..-+...+++++ -..|.+|+..++.+++...+...|++ |.++..|.|.+..||..|..+|+.
T Consensus 136 ranP~-l~~~v~rdi~smltskd---~~Dkl~aLnFi~alGen~~~yv~PfL----prL~aLL~D~deiVRaSaVEtL~~ 207 (253)
T 2db0_A 136 KANPM-LMASIVRDFMSMLSSKN---REDKLTALNFIEAMGENSFKYVNPFL----PRIINLLHDGDEIVRASAVEALVH 207 (253)
T ss_dssp HHCHH-HHHHHHHHHHHHTSCSS---HHHHHHHHHHHHTCCTTTHHHHGGGH----HHHHGGGGCSSHHHHHHHHHHHHH
T ss_pred HhChH-HHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHhccCccccCcch----HHHHHHHcCcchhhhHHHHHHHHH
Confidence 88774 34456666677788887 88999999999988887665556665 677789999999999999999999
Q ss_pred HHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Q 005686 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (683)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (683)
++.. .+.+..++...++-++|++..|+.....+|+.+.
T Consensus 208 lA~~----------npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 208 LATL----------NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHTS----------CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHc----------CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9863 3347888888888999999889888888888765
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.12 E-value=2.9e-08 Score=109.38 Aligned_cols=298 Identities=13% Similarity=0.163 Sum_probs=219.8
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhc---CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCC
Q 005686 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (683)
Q Consensus 97 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~---~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 173 (683)
.+++.+...+..-+..++..++.+.... ....| .++..+.+.+.+.... ++|+.++..+++..+..-.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~------ 88 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPS------ 88 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTT------
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCC------
Confidence 3555555433444566666777766543 22335 6888888888765444 9999999999987654211
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCC-CCHHHHHHHHHHHHHHHhhC
Q 005686 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVR 252 (683)
Q Consensus 174 ~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~ 252 (683)
++.++-.++|.++..+.|....||.+|-.+...++..+++.-. ..+++.++..+.+ ..+..+..++.++..+++..
T Consensus 89 ~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp THHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 1356667899999999999999999999999999987765332 3456777766543 36899999999999999998
Q ss_pred ccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCC
Q 005686 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (683)
Q Consensus 253 ~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~ 332 (683)
+..+...+++++|.+..++.|.-++|...|..++..+|.. .....+.|+++.++..+ ...++
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d~~~~~~~~~~~~----~~p~~------------- 227 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKDIERFIPSLIQCI----ADPTE------------- 227 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTTTGGGHHHHHHHH----HCTTH-------------
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcchhhhHHHHHHHh----cChhh-------------
Confidence 9999999999999999999999999999999999998876 23345666666666554 32111
Q ss_pred CCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc-----CccchhhhHHHHHHHHccCCCCChh
Q 005686 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-----GDEILPTLMPVIQAKLSASGDEAWK 407 (683)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~-----~~~~~~~l~~~l~~~l~~~~~~~~~ 407 (683)
.-.|+..|+.+. ....+..+.|.+...|.... ..
T Consensus 228 --------------------------------------~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~---~~ 266 (986)
T 2iw3_A 228 --------------------------------------VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERE---TG 266 (986)
T ss_dssp --------------------------------------HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSS---HH
T ss_pred --------------------------------------hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCc---ch
Confidence 233455555433 22456678899999998766 56
Q ss_pred hHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHhhccC-CCChhHHHHHHHHHHHHHHHHH
Q 005686 408 DREAAVLALGAIAEGC--IKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 408 ~r~aal~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
.+.-+...+..++.-. +....+|++.++|.+.+..+ -.+|.+|..|-.++..+.+...
T Consensus 267 ~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 267 IKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 6666677788888765 45678999999999888775 4789999999999988877654
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.10 E-value=1.1e-07 Score=97.36 Aligned_cols=353 Identities=12% Similarity=0.040 Sum_probs=199.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC---------hHHHHHHHhhhccC---------CCHHHHHHHHHHHH
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPD---------FNNYLAFILARAEG---------KSVEIRQAAGLLLK 76 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~---------~~~~l~~il~~~~~---------~~~~~R~~a~~~l~ 76 (683)
+.+..++....+.|.+ .....|..+..+|+ .++.|.++|..... .+++.|+-|+-.|.
T Consensus 32 ~~~~~l~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKD----DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp -------------CCH----HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHH----HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 3444455555455544 25556666666554 46678888874212 45899999999999
Q ss_pred HHHHHhhccCCHhHHHHHH----------HHHhhhhhcCC-------hHHHH-------HHHHHHHHHHhhc-CcCCh--
Q 005686 77 NNLRTAYKSMSPSNQQYIK----------SELLPCLGAAD-------RHIRS-------TVGTIVSVVVQLG-GIAGW-- 129 (683)
Q Consensus 77 ~~i~~~w~~l~~~~~~~i~----------~~Ll~~l~~~~-------~~vr~-------~~~~~l~~i~~~~-~~~~~-- 129 (683)
|.+...-+.........+. ..+++.+.... ..++. +++.+|+.++... .....
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~ 187 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNE 187 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9987653321111111111 22334443221 11443 5555666554321 00000
Q ss_pred HHHHHHHHHHhc-----------cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHH
Q 005686 130 LELLQALVTCLD-----------SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (683)
Q Consensus 130 ~~l~~~l~~~l~-----------s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~ 198 (683)
.+.++.|..++. +.++..+..+..+|..++......-. .+ ......+|.++..|.+++++++.
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~-~i-----~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA-TL-----CSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHH-HH-----HHCHHHHHHHHHGGGCSCHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHH-HH-----HHcCCcHHHHHHHHhCCCHHHHH
Confidence 123455555552 12356788999999999976542210 00 00256799999999999999999
Q ss_pred HHHHHHHHHHhccchhhHHhHH--HHHHHHHhh-hCCCCHHHHHHHHHHHHHHHhhCccchhhhH---HHHHHHHHHhhc
Q 005686 199 LSLGSVNQFIMLMPSALFVSMD--QYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL---RNLFEYMLQVNK 272 (683)
Q Consensus 199 ~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l---~~l~~~~~~~~~ 272 (683)
.|+.+|..+...........+. ..++.|..+ ....+..+++.++.+|..+....... ...+ ...++.++..+.
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n-k~~I~~~~Gal~~Lv~LL~ 340 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVDGALAFLVGTLT 340 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH-HHHHHHSTTHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH-HHHHHHhcCcHHHHHHHhc
Confidence 9999999986531222222222 356777775 45567888898998888887633221 1111 123444444444
Q ss_pred CCCh----HHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccC
Q 005686 273 DTDD----DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (683)
Q Consensus 273 ~~~~----~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 348 (683)
+.++ +++..|..+|.+++.. . ...+
T Consensus 341 ~~~~~~~~~v~~~A~~aL~nLs~~--~-------------------a~~~------------------------------ 369 (458)
T 3nmz_A 341 YRSQTNTLAIIESGGGILRNVSSL--I-------------------ATNE------------------------------ 369 (458)
T ss_dssp CCCSSSTTHHHHHHHHHHHHHHHH--H-------------------TTCH------------------------------
T ss_pred CCCCcchHHHHHHHHHHHHHHHhc--c-------------------cCCH------------------------------
Confidence 3322 3555555555555431 0 0000
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhh
Q 005686 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY 428 (683)
Q Consensus 349 ~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~ 428 (683)
..|.... -...+|.+.+.+.+++ ...++.|+.+|+.++.+..+...
T Consensus 370 -----------------~~~~~i~--------------~~G~i~~Lv~LL~~~~---~~v~~~A~~aL~nLa~~~~~~~~ 415 (458)
T 3nmz_A 370 -----------------DHRQILR--------------ENNCLQTLLQHLKSHS---LTIVSNACGTLWNLSARNPKDQE 415 (458)
T ss_dssp -----------------HHHHHHH--------------HTTHHHHHHHHSSCSC---HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred -----------------HHHHHHH--------------HcccHHHHHHHHcCCC---hHHHHHHHHHHHHHHcCCHHHHH
Confidence 0000000 0135677778888877 88999999999999876544333
Q ss_pred hhHH-HHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 005686 429 PHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (683)
Q Consensus 429 ~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (683)
.... ..+|.++..+.+.++.+|..|+++|..++..
T Consensus 416 ~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3332 3789999999999999999999999999864
No 72
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.10 E-value=4.6e-09 Score=96.30 Aligned_cols=183 Identities=21% Similarity=0.181 Sum_probs=136.2
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHH
Q 005686 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (683)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 300 (683)
...+.+++.+.++++.+|..++..|..+... ..++.++..+.+.++.+|..|+..++.+...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-------- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGDE-------- 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------
Confidence 4467778888999999999999998876431 2234455567788999999999988887532
Q ss_pred hhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHh
Q 005686 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (683)
Q Consensus 301 ~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~ 380 (683)
..++.+...+.+. ++.+|..+..+|+.+..
T Consensus 76 ----~~~~~L~~~l~d~----------------------------------------------~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 76 ----RAVEPLIKALKDE----------------------------------------------DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp ----GGHHHHHHHTTCS----------------------------------------------SHHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHcCC----------------------------------------------CHHHHHHHHHHHHHhCc
Confidence 2233343333211 12588888888877632
Q ss_pred hcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 005686 381 VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (683)
Q Consensus 381 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (683)
+..++.+.+.+.+++ |.+|.+++.+++.+.. +..++.+...+.|+++.||..|+++|+.+
T Consensus 106 -------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 106 -------ERAVEPLIKALKDED---WFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp -------GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 246677778888888 9999999999998864 12457778888999999999999999998
Q ss_pred HHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 005686 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (683)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l 506 (683)
.. +..++.|...++|+++.||..|..+|..+
T Consensus 166 ~~---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 166 GG---------------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp CS---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred Cc---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 32 34566677777888999999999999865
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.09 E-value=2.4e-08 Score=102.22 Aligned_cols=310 Identities=14% Similarity=0.049 Sum_probs=189.4
Q ss_pred hhHHhHHHHHHHHHHhhchhccccCCCC-CC--cchhHhhHHHHHHhhcCCC--HH-----HHH-------HHHHHHHHH
Q 005686 145 INHMEGAMDALSKICEDIPQVLDSDVPG-LA--ECPINIFLPRLLQFFQSPH--TS-----LRK-------LSLGSVNQF 207 (683)
Q Consensus 145 ~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~--~~~~~~i~~~l~~~l~~~~--~~-----vr~-------~a~~~l~~~ 207 (683)
+..+..+..+|..++..-++........ ++ -+......+.+++.+..+. .+ ++. .|+++|..+
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl 175 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 175 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh
Confidence 5778888888888887766543211000 00 0001122244455555431 11 554 888888888
Q ss_pred HhccchhhHHhHH--HHHHHHHhhhC-----------CCCHHHHHHHHHHHHHHHhhCccchhhh---HHHHHHHHHHhh
Q 005686 208 IMLMPSALFVSMD--QYLQGLFLLSN-----------DPSAEVRKLVCAAFNLLIEVRPSFLEPH---LRNLFEYMLQVN 271 (683)
Q Consensus 208 ~~~~~~~~~~~~~--~~l~~l~~~~~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~l~~~~~~~~ 271 (683)
... ++ ....+. ..++.|..++. +.+..++..+..+|..++...... ... ....++.++..+
T Consensus 176 s~~-~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~-k~~i~~~~GaIp~LV~LL 252 (458)
T 3nmz_A 176 SFD-EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KATLCSMKGCMRALVAQL 252 (458)
T ss_dssp TTS-HH-HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHCHHHHHHHHHGG
T ss_pred cCC-HH-HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc-HHHHHHcCCcHHHHHHHH
Confidence 433 32 222221 23444444431 123568889999999998654421 111 235677788888
Q ss_pred cCCChHHHHHHhhHHHHhhccCCchhhHHhhh--hhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCC
Q 005686 272 KDTDDDVALEACEFWHSYFEAQLPHENLKEFL--PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (683)
Q Consensus 272 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l--~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 349 (683)
.+.+++++..|..+|..++..... ..+..+ ...+|.++..+..+.+
T Consensus 253 ~s~~~~v~~~A~~aL~nLs~~~~~--~~k~~I~~~GaI~~LV~lLl~s~~------------------------------ 300 (458)
T 3nmz_A 253 KSESEDLQQVIASVLRNLSWRADV--NSKKTLREVGSVKALMECALEVKK------------------------------ 300 (458)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSCCH--HHHHHHHHTTHHHHHHHHHTTCCS------------------------------
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHHcCCHHHHHHHHhcCCC------------------------------
Confidence 888999999999999998763111 111111 2355666654322110
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cc--hhhhHHHHHHHHccCCCCC-hhhHHHHHHHHHHHHh--
Q 005686 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI--LPTLMPVIQAKLSASGDEA-WKDREAAVLALGAIAE-- 421 (683)
Q Consensus 350 ~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~--~~~l~~~l~~~l~~~~~~~-~~~r~aal~~l~~l~~-- 421 (683)
..++..+..++..|+....+ .+ ....+|.+.+.+.+..+.. +..++.|+.+|..++.
T Consensus 301 ---------------~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 301 ---------------ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 12566677888888773321 22 2457888888887654211 2578889999998886
Q ss_pred -cchhhhhhhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH--HHHHHHHHHHhccCCccHHH
Q 005686 422 -GCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQE 497 (683)
Q Consensus 422 -~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~v~~ 497 (683)
+..+...... ...+|.++..|.+.+..++..|+++|+.++..-.. ....+ ...++.|...+.+.++.++.
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~------~~~~i~~~G~I~~Lv~LL~s~~~~v~~ 439 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK------DQEALWDMGAVSMLKNLIHSKHKMIAM 439 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH------HHHHHHHHTHHHHHHTTTTCSSHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 3333222222 23688999999999999999999999999842221 22222 45789999999888899999
Q ss_pred HHHHHHHHHHHHh
Q 005686 498 AACSAFATLEEEA 510 (683)
Q Consensus 498 ~a~~al~~l~~~~ 510 (683)
.|+.+|.+++...
T Consensus 440 ~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 440 GSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998653
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.07 E-value=9.6e-09 Score=94.16 Aligned_cols=187 Identities=18% Similarity=0.130 Sum_probs=140.1
Q ss_pred hHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh
Q 005686 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 178 ~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
.....+.+++.+.++++.+|..|+.+|+.+... ..++.+...+.++++.+|..++..|..+...
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------ 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGDE------ 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH------
Confidence 467788999999999999999999999876531 2255666777889999999999998876421
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccC
Q 005686 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (683)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~ 337 (683)
..++.+...+.++++.+|..|+..+..+... ..++.+...+.+
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d--------------------- 118 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKD--------------------- 118 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTC---------------------
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHcC---------------------
Confidence 2334445567889999999999999887542 233344333321
Q ss_pred CCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHH
Q 005686 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALG 417 (683)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~ 417 (683)
.++.+|..+..+++.+.. +..++.+.+.+.+++ +.+|.+++.+|+
T Consensus 119 -------------------------~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~---~~vr~~A~~aL~ 163 (201)
T 3ltj_A 119 -------------------------EDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDED---GWVRQSAADALG 163 (201)
T ss_dssp -------------------------SSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSS---HHHHHHHHHHHH
T ss_pred -------------------------CCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCC---HHHHHHHHHHHH
Confidence 123589999888887742 356777888888888 999999999999
Q ss_pred HHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 418 AIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 418 ~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
.+.. +..++.+...++|+++.||..|..+|+++..
T Consensus 164 ~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 164 EIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 8843 3356677777788999999999999998754
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.06 E-value=1.5e-08 Score=93.58 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=141.7
Q ss_pred hHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccch
Q 005686 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (683)
Q Consensus 178 ~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 256 (683)
.....+.+...+.++++.+|..|+.+|..+....++.....+. ..++.+..++.++++.++..++.+|..++...+...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3567788999999999999999999999998654433222222 468888999999999999999999999986554332
Q ss_pred hhhH-HHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCc
Q 005686 257 EPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (683)
Q Consensus 257 ~~~l-~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~ 335 (683)
...+ ...++.++..+.+.++.++..|+.++..++.. .....
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~------------------------------------ 131 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQI------------------------------------ 131 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHH------------------------------------
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC--CHHHH------------------------------------
Confidence 2222 23566677778888888999999888888754 11100
Q ss_pred cCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHH
Q 005686 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (683)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~ 415 (683)
.. +. -...++.+.+.+.+++ ...|..++.+
T Consensus 132 ---------------------------------~~-------~~-------~~~~i~~L~~ll~~~~---~~v~~~a~~a 161 (210)
T 4db6_A 132 ---------------------------------QA-------VI-------DAGALPALVQLLSSPN---EQILQEALWA 161 (210)
T ss_dssp ---------------------------------HH-------HH-------HTTHHHHHHHHTTCSC---HHHHHHHHHH
T ss_pred ---------------------------------HH-------HH-------HcCcHHHHHHHHcCCC---HHHHHHHHHH
Confidence 00 00 0135666777777777 8999999999
Q ss_pred HHHHHhcchhhhhhhHH-HHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 416 LGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 416 l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
|+.++....+....... ..++.+...+.+.++.+|..|+++|+.++.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99999865433222222 378889999999999999999999998864
No 76
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.06 E-value=4.6e-09 Score=97.19 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=144.7
Q ss_pred CCHHhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCH
Q 005686 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (683)
Q Consensus 9 ~~~~~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~ 88 (683)
.+++.+..|.+.| .+++.. +|..|...|.++.. ++.++.|...+. +.++.+|..|+..|.+.- ++
T Consensus 16 ~~~~~~~~L~~~L---~~~~~~-vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~-------~~ 80 (211)
T 3ltm_A 16 ADPEKVEMYIKNL---QDDSYY-VRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIG-------DE 80 (211)
T ss_dssp CCGGGHHHHHHHT---TCSSHH-HHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHC-------CG
T ss_pred cCHhHHHHHHHHH---cCCCHH-HHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhC-------CH
Confidence 3566666666655 478888 99999999998865 678888888886 568999999998886541 12
Q ss_pred hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcccc
Q 005686 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (683)
Q Consensus 89 ~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (683)
+ ....|...+.++++.+|..++.+++.+.. ++.++.+...+.++++.+|..++.+|+.+..
T Consensus 81 ~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 141 (211)
T 3ltm_A 81 R----AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------- 141 (211)
T ss_dssp G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred H----HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------
Confidence 2 33456677889999999999999988753 3466788888899999999999999988621
Q ss_pred CCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 005686 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (683)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l 248 (683)
...++.+...+.++++.||..++.+|+.+.. +..++.+...++++++.+|..+..+|..+
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3457788899999999999999999998742 23455666666788999999999999877
Q ss_pred HhhC
Q 005686 249 IEVR 252 (683)
Q Consensus 249 ~~~~ 252 (683)
-...
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.04 E-value=1.1e-05 Score=85.99 Aligned_cols=498 Identities=12% Similarity=0.043 Sum_probs=253.6
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHH-Hh----ccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcch
Q 005686 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT-CL----DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (683)
Q Consensus 103 ~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~-~l----~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (683)
....+.||..+--+.+.+.+... ....+.+..++. .+ .+........++.++..+.--.+.....-+ .
T Consensus 180 ~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lf------l 252 (778)
T 3opb_A 180 RISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIF------L 252 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHH------S
T ss_pred ccChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHH------c
Confidence 45677888887777776665542 333333333333 33 221223344555666665554444221100 0
Q ss_pred hHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhccchhhHHh-HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 005686 178 INIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (683)
Q Consensus 178 ~~~i~~~l~~~l~-~~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (683)
.+.+.+.+...+. ..+..+..++++.+...+..- ..... ...+++.|...+++ ..+|..+.-+|..+.......
T Consensus 253 ~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~--~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~ 328 (778)
T 3opb_A 253 TKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE--TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLT 328 (778)
T ss_dssp TTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT
T ss_pred cccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc--HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC
Confidence 1344555665553 356778888888887765331 11111 23445555555554 578888888888876543221
Q ss_pred hhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccCh-hh--hhh---h----h
Q 005686 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD-DD--ESL---V----E 325 (683)
Q Consensus 256 ~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~-~d--~~~---~----~ 325 (683)
...+..+.+.+...+.+.+.+.+..|++.|..+...+..++.+..- +.++..++..+...+ .+ ... + .
T Consensus 329 -~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 329 -CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp -TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred -cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 2234567777777777666555889999988886553323322211 122233333332211 11 000 0 0
Q ss_pred hcccCCC-CCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCC
Q 005686 326 AEEDESL-PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (683)
Q Consensus 326 ~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 404 (683)
..+.... ..+...+++|.+. ++.+....++ .-.........-...+-+ ..++|.+...+++++
T Consensus 407 ~~~~~~~e~~~l~~Lk~~A~~---~~p~~~~~d~--------~~~~~~~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s-- 470 (778)
T 3opb_A 407 LPEEXXXXXXXXXXXXXXXXX---XXPAADKVGA--------EKAAKEDILLFNEKYILR---TELISFLKREMHNLS-- 470 (778)
T ss_dssp CCCCCCCCCC---------------------CCT--------HHHHHHHHHHHHHHHTTT---TTHHHHHHHHGGGSC--
T ss_pred CCcccchhhhhhhhhhhhccc---cCcccCcccc--------cccchHHHHHHHHHHHHH---CcCHHHHHHHHcCCC--
Confidence 0111000 1122233333221 1111111111 000011111101111111 147777888888887
Q ss_pred ChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChh---HHHHHHHHHHHHHHHHHhhhCCCcchhhHHHH
Q 005686 405 AWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPL---IRSISCWTLSRFSKFIVQDIGHQNGREQFEKV 480 (683)
Q Consensus 405 ~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~~~~---vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 480 (683)
...|+.++++|..++..- +.....+. ..++.+++.+.+.... +|..|+.+|.++.....+... ....-....
T Consensus 471 -~~~re~A~~aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~--f~~~~~~~a 546 (778)
T 3opb_A 471 -PNCKQQVVRIIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI--FKKYSALNA 546 (778)
T ss_dssp -HHHHHHHHHHHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH--SSSSCSTTH
T ss_pred -HHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH--cCCCccccc
Confidence 999999999999998652 22222222 2678888888765443 899999999999854322110 000001267
Q ss_pred HHHHHHHhcc-CCc-------------cHHHHHHHHHHHHHHHhc---ccchH-HHH--HHHHHHHHHHHHhhHhHHHHH
Q 005686 481 LMGLLKRILD-TNK-------------RVQEAACSAFATLEEEAA---EELAP-RLE--IILQHLMMAFGKYQRRNLRIV 540 (683)
Q Consensus 481 l~~l~~~l~d-~~~-------------~v~~~a~~al~~l~~~~~---~~l~~-~l~--~i~~~L~~~l~~~~~~~~~~~ 540 (683)
++.|+..|.. +.. .-+-.|+.||.+++..-. +.+.. .+. ..++.|..++.+.+...++.+
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA 626 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRST 626 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHH
Confidence 8888888872 221 126689999999987531 23322 232 356666666666556677899
Q ss_pred HHHHHHHHHHhcc---ccCch--hHHHhhhHHHHHHHhcCCCCCcch-hhHHhHHHHHHHHhcc---ccccchHHHHHHH
Q 005686 541 YDAIGTLADAVGF---ELNQP--VYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA---GFTQFAQPVFQRC 611 (683)
Q Consensus 541 ~~~l~~l~~~~~~---~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~l~~~~g~---~f~~~~~~~~~~l 611 (683)
.++|++++..-.. .++.. +--..=++.++..+.. ++.+. ..+..+++.+...... .+. -....++.+
T Consensus 627 ~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s---~D~~~r~AAagALAnLts~~~~ia~~ll-~~~~gi~~L 702 (778)
T 3opb_A 627 LELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL---SDVESQRAVAAIFANIATTIPLIAKELL-TKKELIENA 702 (778)
T ss_dssp HHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCChHHHHHHH-HccccHHHH
Confidence 9999999874321 23210 0001125556655542 34444 3455556555432221 111 113456667
Q ss_pred HHHHHHHHHHhhCCcccCCCCCchHHHHHHHHHHHHHH
Q 005686 612 INIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAE 649 (683)
Q Consensus 612 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~ 649 (683)
+.++++.. .+.+++..++-++..|+.
T Consensus 703 l~lL~~~~------------~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 703 IQVFADQI------------DDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHTT------------TCHHHHHHHHHHHHHHHT
T ss_pred HHHHhccC------------CCHHHHHHHHHHHHHHHH
Confidence 77776531 356788888888888886
No 78
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.04 E-value=9.1e-09 Score=95.12 Aligned_cols=192 Identities=17% Similarity=0.129 Sum_probs=145.4
Q ss_pred HHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC--Ch--HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcccc
Q 005686 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--GW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (683)
Q Consensus 93 ~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~--~~--~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~ 168 (683)
.....|..++.++++.+|..++.+++.++...... .. .+.++.+.+.+.++++.+|..++.+|+.++.........
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 44456777888999999999999999998643111 01 146889999999999999999999999998654432110
Q ss_pred CCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH-HHHHHHHHhhhCCCCHHHHHHHHHHHHH
Q 005686 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (683)
Q Consensus 169 ~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 247 (683)
-.-...+|.++..+.++++.+|..|+.++..+....+......+ ...++.+...+.++++.++..++.+|..
T Consensus 92 -------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 92 -------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp -------HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -------HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 01135789999999999999999999999999865443322222 2468888999898899999999999999
Q ss_pred HHhhCccchhhhH-HHHHHHHHHhhcCCChHHHHHHhhHHHHhhc
Q 005686 248 LIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (683)
Q Consensus 248 l~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 291 (683)
++...+....... ...++.+...+.+.+++++..|..+|..+++
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9886544322222 2466777788888999999999999998875
No 79
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.01 E-value=2.1e-06 Score=100.07 Aligned_cols=459 Identities=11% Similarity=0.045 Sum_probs=232.9
Q ss_pred CCHHHHHHHHHHHHHHh------cCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHh--hccCCHhHHHHHHH---
Q 005686 28 SSTADKSQIWQQLQQYS------QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA--YKSMSPSNQQYIKS--- 96 (683)
Q Consensus 28 ~~~~~r~~A~~~L~~~~------~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~--w~~l~~~~~~~i~~--- 96 (683)
+.. +|.+..+.+..+. +.|+++..+...+.+ ++..+..+..+|+...... ...+....+..+++
T Consensus 109 ~~~-vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~----~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 109 ENH-IKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ----GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp CHH-HHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 355 8888888887742 256667777666542 5566777777777665432 22333322232222
Q ss_pred --------HHhhhhhcC-------------------ChHHHHHHHHHHHHHHhhcCcCCh----HHHHHHHHHHhccCCh
Q 005686 97 --------ELLPCLGAA-------------------DRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDSNDI 145 (683)
Q Consensus 97 --------~Ll~~l~~~-------------------~~~vr~~~~~~l~~i~~~~~~~~~----~~l~~~l~~~l~s~~~ 145 (683)
.+...+.+. +..++..+-.++.....+.+.+.. ..+++.+...+. ++
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~ 261 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLN--EQ 261 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGG--CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcC--CH
Confidence 222222210 112222222333222221111111 136666666554 46
Q ss_pred hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc--------CCCHHHHHHHHHHHHHHHhccch----
Q 005686 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ--------SPHTSLRKLSLGSVNQFIMLMPS---- 213 (683)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~--------~~~~~vr~~a~~~l~~~~~~~~~---- 213 (683)
..|..|+.||..++...... . +...++.......+..+++.+. +.+.++++...+.+..+......
T Consensus 262 ~lr~~A~ecL~~i~s~~~~~-~-~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~ 339 (1204)
T 3a6p_A 262 ELQLGAAECLLIAVSRKGKL-E-DRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGA 339 (1204)
T ss_dssp TTHHHHHHHHHHHHTCCSCH-H-HHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCh-h-hHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999998754210 0 0000000011122333444431 22456666666666655532211
Q ss_pred ----hhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhC----ccchhhhHHHHHHHH---HHhhcCCC-------
Q 005686 214 ----ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR----PSFLEPHLRNLFEYM---LQVNKDTD------- 275 (683)
Q Consensus 214 ----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~l~~l~~~~---~~~~~~~~------- 275 (683)
...+.+..+++.++..+.+++..+...++..|..+.+.. ...+.+++..+++.+ +..+.-++
T Consensus 340 ~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~ 419 (1204)
T 3a6p_A 340 DSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSC 419 (1204)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHH
T ss_pred cccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcch
Confidence 123356788999999988888899999999998887653 244667888888887 33222111
Q ss_pred -----------------hHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCC
Q 005686 276 -----------------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (683)
Q Consensus 276 -----------------~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~ 338 (683)
.+.|....+++..++.. .+....+++ .+.+...+...-+....|.
T Consensus 420 ~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v--~p~~~l~~v---~~~l~~~l~~~l~~~~~~~------------- 481 (1204)
T 3a6p_A 420 EYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRL--DPKTSFQMA---GEWLKYQLSTFLDAGSVNS------------- 481 (1204)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHH---HHHHHHHHTCC---------------------
T ss_pred hhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHH---HHHHHHHHhhhhccccccc-------------
Confidence 01233333444444332 111111111 1222111111000000000
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc---C--ccchhhhHHHHHHH-Hc--cCCCCChhhHH
Q 005686 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---G--DEILPTLMPVIQAK-LS--ASGDEAWKDRE 410 (683)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~---~--~~~~~~l~~~l~~~-l~--~~~~~~~~~r~ 410 (683)
.++.....+ .... ..+..|....+....++.+.+.+ . +.....+++.+.+. ++ ..+ +..|.
T Consensus 482 ---~~~~~~~~~-~~~~----~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~---p~l~~ 550 (1204)
T 3a6p_A 482 ---CSAVGTGEG-SLCS----VFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKD---PLILS 550 (1204)
T ss_dssp -------------CCSC----SSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSC---HHHHH
T ss_pred ---ccccccccc-cccC----cCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCC---hHHHH
Confidence 000000000 0000 01133555566566666665544 1 12111233434333 32 235 88999
Q ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC------------CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHH
Q 005686 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD------------KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE 478 (683)
Q Consensus 411 aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 478 (683)
.++.+++.++..... ..++++.++..++..+.+ .+..||.+|+.++.++++.++.. ..+|++
T Consensus 551 ~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~-----L~p~~~ 624 (1204)
T 3a6p_A 551 CVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQL-----VLPNFD 624 (1204)
T ss_dssp HHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHH-----HGGGHH
T ss_pred HHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHH
Confidence 999999998887642 246778888888877655 23589999999999999988764 568888
Q ss_pred HHHHHHHHHhccCC---ccHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHH
Q 005686 479 KVLMGLLKRILDTN---KRVQEAACSAFATLEEEAA--EELAPRLEIILQHLMMAFG 530 (683)
Q Consensus 479 ~~l~~l~~~l~d~~---~~v~~~a~~al~~l~~~~~--~~l~~~l~~i~~~L~~~l~ 530 (683)
++...+...+.... ..-+..-..++..+....+ +....|+..+++-++..+.
T Consensus 625 ~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 625 MLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 88888877775332 3334445556655533322 1222345555555444443
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.93 E-value=9.7e-07 Score=74.17 Aligned_cols=220 Identities=13% Similarity=0.047 Sum_probs=166.6
Q ss_pred HHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhh-cCChHHHHHHHHHHH
Q 005686 40 LQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVS 118 (683)
Q Consensus 40 L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~-~~~~~vr~~~~~~l~ 118 (683)
+-..+-+.+++..++..|- +.-..+|..|...+-..+.. -++..+.++..|+-.+. ++.-..-+.++..+|
T Consensus 24 i~~a~~d~~~l~~lI~~LD---DDlwtV~kNAl~vi~~i~~~-----~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G 95 (253)
T 2db0_A 24 LIMAKYDESVLKKLIELLD---DDLWTVVKNAISIIMVIAKT-----REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFG 95 (253)
T ss_dssp HHHHHHCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhc---cHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHh
Confidence 3333445677888888774 33456787787777555433 25677777788888775 666777788999999
Q ss_pred HHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHH
Q 005686 119 VVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (683)
Q Consensus 119 ~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~ 198 (683)
.+++.. |.....++|.+.....-+++..|.+.-.+|+.+....+.. +..++..+...+.+++..-|.
T Consensus 96 ~la~i~-Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l------------~~~v~rdi~smltskd~~Dkl 162 (253)
T 2db0_A 96 QMAKEK-PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML------------MASIVRDFMSMLSSKNREDKL 162 (253)
T ss_dssp HHHHHC-HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH------------HHHHHHHHHHHTSCSSHHHHH
T ss_pred HHHHhC-HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH------------HHHHHHHHHHHhcCCChHHHH
Confidence 999875 4455667788888888889999999999999999988853 577888899999999988899
Q ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHH
Q 005686 199 LSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDV 278 (683)
Q Consensus 199 ~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v 278 (683)
.|+..++.+.+..+ .+...++|.++.++.|.++-||..+.++|..++...++ +.+ ++.-.++-++|.++.+
T Consensus 163 ~aLnFi~alGen~~----~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRk----ii~~kl~e~~D~S~lv 233 (253)
T 2db0_A 163 TALNFIEAMGENSF----KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRK----VVIKRLEELNDTSSLV 233 (253)
T ss_dssp HHHHHHHTCCTTTH----HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHH----HHHHHHHHCCCSCHHH
T ss_pred HHHHHHHHHhccCc----cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHH----HHHHHHHHhcCcHHHH
Confidence 99888877766543 34445688899999999999999999999999998876 444 4444455678888777
Q ss_pred HHHHhhHHHHh
Q 005686 279 ALEACEFWHSY 289 (683)
Q Consensus 279 r~~a~~~l~~l 289 (683)
....-+.++.+
T Consensus 234 ~~~V~egL~rl 244 (253)
T 2db0_A 234 NKTVKEGISRL 244 (253)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 81
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.86 E-value=5.8e-08 Score=93.54 Aligned_cols=187 Identities=16% Similarity=0.041 Sum_probs=129.4
Q ss_pred HHHhh-hhhcCChHHHHHHHHHHHHHHhhcCcCCh----HHHHHHHHHHhcc-CChhHHhHHHHHHHHHHhhchhccccC
Q 005686 96 SELLP-CLGAADRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSD 169 (683)
Q Consensus 96 ~~Ll~-~l~~~~~~vr~~~~~~l~~i~~~~~~~~~----~~l~~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (683)
..|+. +|.++++.+|..++.+++.++...+...+ .+.++.|.+++++ ++..+|..++.+|+.++...+.....
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~- 162 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ- 162 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH-
Confidence 45677 88899999999999999999975422111 1357888888875 47889999999999999876542210
Q ss_pred CCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 005686 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (683)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l 248 (683)
-.-...+|.+...+.+++..++..|+.++..++...++....... .+++.|+.++.+++..++..++.+|..+
T Consensus 163 ------~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 163 ------FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp ------HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred ------HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 001357889999999999999999999999998764332222222 4688888988988999999999999999
Q ss_pred HhhCccchh------hhHHHHHHHHHHhhcCC--ChHHHHHHhhHHHHh
Q 005686 249 IEVRPSFLE------PHLRNLFEYMLQVNKDT--DDDVALEACEFWHSY 289 (683)
Q Consensus 249 ~~~~~~~~~------~~l~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l 289 (683)
+...+.... +.+..+++-..+.++.. ..++..++..+|..+
T Consensus 237 ~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 237 VTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 877443221 12333333333334322 245555555555544
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.85 E-value=2.8e-06 Score=92.55 Aligned_cols=322 Identities=16% Similarity=0.095 Sum_probs=198.2
Q ss_pred hhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc---cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcc
Q 005686 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD---SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (683)
Q Consensus 100 ~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~---s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~ 176 (683)
+.+.......+-.+...+|.|-.... .+-+..|...+. ++++.+|.+|+.++|.+......
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~g~~----~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~------------ 428 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHKGNL----LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR------------ 428 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTSSCT----TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH------------
T ss_pred hhhhccchHHHHHHHHHhhhhccCch----HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH------------
Confidence 34443444455666667777665432 234666666665 66788999999999988765542
Q ss_pred hhHhhHHHHHHhhcCCC--------HHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 005686 177 PINIFLPRLLQFFQSPH--------TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (683)
Q Consensus 177 ~~~~i~~~l~~~l~~~~--------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l 248 (683)
..+..|...+.+++ +.+|..|+-.|+...-... . +.+++.|...+.+++..++..+.-.+..+
T Consensus 429 ---~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~---~---eev~e~L~~~L~dd~~~~~~~AalALGli 499 (963)
T 4ady_A 429 ---DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA---N---IEVYEALKEVLYNDSATSGEAAALGMGLC 499 (963)
T ss_dssp ---HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC---C---HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC---C---HHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 23455556665544 6789888888887642211 0 12344455555555566666666666654
Q ss_pred HhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcc
Q 005686 249 IEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEE 328 (683)
Q Consensus 249 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~ 328 (683)
.-.... ...+..|+..+. .+.++.+|+.+...|+-+.-. ..+.+ +.++..+ ...
T Consensus 500 ~vGTgn--~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~~g--~~e~~----~~li~~L----~~~----------- 553 (963)
T 4ady_A 500 MLGTGK--PEAIHDMFTYSQ---ETQHGNITRGLAVGLALINYG--RQELA----DDLITKM----LAS----------- 553 (963)
T ss_dssp HTTCCC--HHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTT--CGGGG----HHHHHHH----HHC-----------
T ss_pred hcccCC--HHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhhCC--ChHHH----HHHHHHH----HhC-----------
Confidence 322221 123344555443 355677888877777765332 11222 2222222 100
Q ss_pred cCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChh
Q 005686 329 DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWK 407 (683)
Q Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~ 407 (683)
.++.+|..+.-+++.-....|. ..++.++. .+.++.+ ..
T Consensus 554 ----------------------------------~dp~vRygaa~alglAyaGTGn~~aIq~LL~---~~~~d~~---d~ 593 (963)
T 4ady_A 554 ----------------------------------DESLLRYGGAFTIALAYAGTGNNSAVKRLLH---VAVSDSN---DD 593 (963)
T ss_dssp ----------------------------------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH---HHHHCSC---HH
T ss_pred ----------------------------------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---HhccCCc---HH
Confidence 1235777776666554444555 33333333 3344666 78
Q ss_pred hHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHH
Q 005686 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK 486 (683)
Q Consensus 408 ~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 486 (683)
+|.+|+.+||-+.-+-++ .++.++. ..++.++.||..|+.++|.++..-+ ...++..|..
T Consensus 594 VRraAViaLGlI~~g~~e--------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-----------~~~aid~L~~ 654 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT--------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-----------LQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS--------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-----------CHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-----------cHHHHHHHHH
Confidence 999999999988665431 2333444 3457889999999999999864211 1456667777
Q ss_pred HhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 005686 487 RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (683)
Q Consensus 487 ~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~ 531 (683)
..+|++..||..|+.||+.+.....+...|.+..+++.|.+.+.+
T Consensus 655 L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp HHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred HccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence 788999999999999999887766677778888888888888775
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.82 E-value=2.1e-07 Score=91.04 Aligned_cols=318 Identities=13% Similarity=0.075 Sum_probs=175.3
Q ss_pred HHHHHHHHHhhhhhcC--C-hHHHHHHHHHHHHHHhhc--CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 90 NQQYIKSELLPCLGAA--D-RHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 90 ~~~~i~~~Ll~~l~~~--~-~~vr~~~~~~l~~i~~~~--~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
.+..+.+. .+.|.++ + ...|..+..++..+...+ +......++..+.+++.++|...|+.++..+..+.+.-.
T Consensus 23 ~k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~- 100 (355)
T 3tjz_B 23 EKSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE- 100 (355)
T ss_dssp CHHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS-
T ss_pred hHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH-
Confidence 34444444 4677765 3 345567777887777654 233467889999999999999999999888877666511
Q ss_pred ccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 005686 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (683)
..+ -++..+.+-++++++-+|..|+++++.+... .+ ++.+.+.+-+.+.|.++.||+.|+-+
T Consensus 101 -----------e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m---~~~l~~~lk~~L~d~~pyVRk~A~l~ 162 (355)
T 3tjz_B 101 -----------DVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---TM---LQAIERYMKQAIVDKVPSVSSSALVS 162 (355)
T ss_dssp -----------CGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TT---HHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred -----------HHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HH---HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 112 5677788899999999999999999998632 12 34456777788899999999999999
Q ss_pred HHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhh
Q 005686 245 FNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (683)
Q Consensus 245 l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~ 324 (683)
...+....|+.++.++. -+...+.+.++-|...|+.++..+.+. .. ..+.++++.+...-.
T Consensus 163 ~~kL~~~~pe~v~~~~~----~l~~ll~d~n~~V~~~Al~lL~ei~~~--d~----~a~~kLv~~l~~~~l--------- 223 (355)
T 3tjz_B 163 SLHLLKCSFDVVKRWVN----EAQEAASSDNIMVQYHALGLLYHVRKN--DR----LAVSKMISKFTRHGL--------- 223 (355)
T ss_dssp HHHHTTTCHHHHHTTHH----HHHHHTTCSSHHHHHHHHHHHHHHHTT--CH----HHHHHHHHHHHSSCC---------
T ss_pred HHHHhccCHHHHHHHHH----HHHHHhcCCCccHHHHHHHHHHHHHhh--ch----HHHHHHHHHHhcCCC---------
Confidence 99999998887765444 444466788888888889888888765 21 123344444321100
Q ss_pred hhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cchhhhHHHHHHHHccC
Q 005686 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSAS 401 (683)
Q Consensus 325 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~ 401 (683)
+ ..|. -...+..++...++ .....+++.+...+++.
T Consensus 224 ---------------~----------------------~~~~----q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~ 262 (355)
T 3tjz_B 224 ---------------K----------------------SPFA----YCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNK 262 (355)
T ss_dssp ---------------S----------------------CHHH----HHHHHHHHTCC-----------------CCCCCS
T ss_pred ---------------c----------------------ChHH----HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCC
Confidence 0 0011 11222222222221 22346777777778777
Q ss_pred CCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHH
Q 005686 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (683)
Q Consensus 402 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 481 (683)
+ ..+.+.|+.++-.+...... .+...+..+...+.++++.+|..|+..|..+...-+ ..+...-
T Consensus 263 ~---~aVvyEa~k~I~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P---------~~v~~~n 326 (355)
T 3tjz_B 263 H---EMVVYEAASAIVNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP---------SAVTACN 326 (355)
T ss_dssp S---HHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred C---hHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc---------HHHHHHH
Confidence 6 88888888888766442211 122223344445667888999999999999887543 3344555
Q ss_pred HHHHHHhccCCccHHHHHHHHH
Q 005686 482 MGLLKRILDTNKRVQEAACSAF 503 (683)
Q Consensus 482 ~~l~~~l~d~~~~v~~~a~~al 503 (683)
..+..++.|+|..++..|..+|
T Consensus 327 ~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 327 LDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ----------------------
T ss_pred HHHHHHccCCcHhHHHHHHHHh
Confidence 6677778888866655554443
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.80 E-value=2e-06 Score=82.85 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhccCC------------hhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHH-hhcCCCHHH
Q 005686 130 LELLQALVTCLDSND------------INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-FFQSPHTSL 196 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~------------~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~l~~~~~~v 196 (683)
++.++..++.+.++. ...|..|+..|..+++.....-. -.-...+|.++. .|.++++.+
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~--------~~~~G~l~~Lv~~lL~s~~~~v 98 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAAD--------FCQLSGMHLLVGRYLEAGAAGL 98 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHH--------HHHTTHHHHHHHTTTTCSSHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHH--------HHHcCCHHHHHHHHHcCCCHHH
Confidence 445566666665542 25688888999888875443110 001345788899 999999999
Q ss_pred HHHHHHHHHHHHhccchhhHHhHH-HHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHHhhcC
Q 005686 197 RKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD 273 (683)
Q Consensus 197 r~~a~~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~ 273 (683)
|..|+.+++.++...|..-...+. ..++.|+.++. +++..++..++.+|..++...+........ ..++.+...+++
T Consensus 99 r~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 999999999998765532211121 35677777776 457899999999999999876543332222 456677777778
Q ss_pred CChHHHHHHhhHHHHhhcc
Q 005686 274 TDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 274 ~~~~vr~~a~~~l~~l~~~ 292 (683)
.+..++..|+.++..++..
T Consensus 179 ~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 8888999999888888764
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.74 E-value=3.7e-07 Score=90.50 Aligned_cols=262 Identities=14% Similarity=0.043 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHHhccchhhHHhHH--HHHHHHHhhhC-----------CCCHHHHHHHHHHHHHHHhhCccchhhh--
Q 005686 195 SLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSN-----------DPSAEVRKLVCAAFNLLIEVRPSFLEPH-- 259 (683)
Q Consensus 195 ~vr~~a~~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~-- 259 (683)
.....|+++|..+... + .....+. ..++.|..++. ..++.++..+..+|..++...... +..
T Consensus 47 ~~~~~A~~aL~nls~d-~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~-k~~i~ 123 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-E-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KATLC 123 (354)
T ss_dssp GTHHHHHHHHHHHHTS-H-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCC-H-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHH-HHHHH
Confidence 4455677888777644 2 2222221 23344444331 123568889999999998654321 111
Q ss_pred -HHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCC--chhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCcc
Q 005686 260 -LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (683)
Q Consensus 260 -l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~ 336 (683)
....++.++..+.+.+++++..|..+|..++.... ....+. -...+|.++..+..+.+
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~--~~G~Ip~Lv~lL~~~~~----------------- 184 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR--EVGSVKALMECALEVKK----------------- 184 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH--HTTHHHHHHHHHHHCCC-----------------
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH--HCCCHHHHHHHHhcCCC-----------------
Confidence 23567778888888899999999999999976311 111111 12345666554321110
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cc--hhhhHHHHHHHHccCCCC-ChhhHH
Q 005686 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI--LPTLMPVIQAKLSASGDE-AWKDRE 410 (683)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~--~~~l~~~l~~~l~~~~~~-~~~~r~ 410 (683)
..++..+..+|..++....+ .+ ....+|.+.+.+.+.++. +...++
T Consensus 185 ----------------------------~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~ 236 (354)
T 3nmw_A 185 ----------------------------ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236 (354)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHH
Confidence 12566677888888763321 22 246788888888765421 125888
Q ss_pred HHHHHHHHHHh---cchhhhhhhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhH--HHHHHHH
Q 005686 411 AAVLALGAIAE---GCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGL 484 (683)
Q Consensus 411 aal~~l~~l~~---~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~l~~l 484 (683)
.|+.+|..++. +..+...... ...+|.++..|.+.+..++..|+++|+.++..... ....+ ...++.|
T Consensus 237 ~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~------~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 237 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK------DQEALWDMGAVSML 310 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH------HHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH------HHHHHHHCCCHHHH
Confidence 89999998886 3333222222 12688999999999999999999999999842221 12222 3578999
Q ss_pred HHHhccCCccHHHHHHHHHHHHHHHhcc
Q 005686 485 LKRILDTNKRVQEAACSAFATLEEEAAE 512 (683)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (683)
.+.+.+.++.++..|+++|.+++...+.
T Consensus 311 v~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 311 KNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999988899999999999999876543
No 86
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.72 E-value=2.7e-06 Score=84.29 Aligned_cols=263 Identities=13% Similarity=0.082 Sum_probs=169.4
Q ss_pred hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC-----------CCHHHHHHHHHHHHHHHhccchh
Q 005686 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-----------PHTSLRKLSLGSVNQFIMLMPSA 214 (683)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-----------~~~~vr~~a~~~l~~~~~~~~~~ 214 (683)
.....|+.+|+.++.. .+ .+..+ .-...++.++..+.. .++.++..|..+|..++...+.
T Consensus 47 ~~~~~A~~aL~nls~d-~e-~R~~i------~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~- 117 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EE-HRHAM------NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA- 117 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HH-HHHHH------HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH-
T ss_pred HHHHHHHHHHHHHcCC-HH-HHHHH------HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH-
Confidence 3455677777777654 21 11000 012345555555531 2467999999999999855332
Q ss_pred hHHh---HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHH--HHHHHHHHh-hcCCChHHHHHHhhHHHH
Q 005686 215 LFVS---MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQV-NKDTDDDVALEACEFWHS 288 (683)
Q Consensus 215 ~~~~---~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--~l~~~~~~~-~~~~~~~vr~~a~~~l~~ 288 (683)
.... ....++.|..++.+++++++..++.+|..+........+..+. ..++.++.. ..+.+++++..|..++.+
T Consensus 118 ~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 1222 2356899999999889999999999999997642111111111 234555554 455678899999999999
Q ss_pred hhccCCchhhHHhh--hhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCcccccccc
Q 005686 289 YFEAQLPHENLKEF--LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (683)
Q Consensus 289 l~~~~~~~~~~~~~--l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~ 366 (683)
++.. ....-..+ ....+|.|+..+....+ .....
T Consensus 198 Ls~~--~~~nk~~i~~~~Gai~~Lv~lL~~~~~------------------------------------------~~~~~ 233 (354)
T 3nmw_A 198 LSAH--CTENKADICAVDGALAFLVGTLTYRSQ------------------------------------------TNTLA 233 (354)
T ss_dssp HHTT--CHHHHHHHHHSTTHHHHHHHHTTCCCS------------------------------------------SSCCH
T ss_pred HHcc--ChhhhHHHHHhcCcHHHHHHHhccCCC------------------------------------------cccHH
Confidence 8763 11111122 24567777766643210 00113
Q ss_pred HHHHHHHHHHHHHhh---cCc---cch-hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHH-HHHHHH
Q 005686 367 LRKCSAAALDVLSNV---FGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFL 438 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~---~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~-~l~~~l 438 (683)
++..+..+|..++.. ..+ .+. ...+|.+.+.+.+++ ...++.|+.+|+.++.+..+......+ ..+|.+
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS---LTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC---hHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 677788888888763 211 111 246788888998887 899999999999998665443322222 378999
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHH
Q 005686 439 IPLLDDKFPLIRSISCWTLSRFSKFI 464 (683)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (683)
+..+.+.++.+|..|+++|..++..-
T Consensus 311 v~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 311 KNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998764
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.70 E-value=6.6e-07 Score=83.13 Aligned_cols=179 Identities=18% Similarity=0.191 Sum_probs=134.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCC-chhhHHhh-hhhhHH
Q 005686 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL-PHENLKEF-LPRLVP 308 (683)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~-l~~l~~ 308 (683)
-+.+...+..+++.|...++..++.+...++.++.++.-.+.+.+..+-..+++++..+...-. ....+.++ ...++|
T Consensus 56 fs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP 135 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVP 135 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3457888889999999888887777777777788877655667788899999999888754300 01112222 456788
Q ss_pred HHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchh
Q 005686 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP 388 (683)
Q Consensus 309 ~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 388 (683)
.++..+.++.+ .+|..+.+++..+...++..
T Consensus 136 ~LveKlGd~k~----------------------------------------------~vR~~~r~il~~l~~v~~~~--- 166 (266)
T 2of3_A 136 YLLLKTGEAKD----------------------------------------------NMRTSVRDIVNVLSDVVGPL--- 166 (266)
T ss_dssp HHHHGGGCSSH----------------------------------------------HHHHHHHHHHHHHHHHHCHH---
T ss_pred HHHHHhCCChH----------------------------------------------HHHHHHHHHHHHHHHHCCHH---
Confidence 88877765432 48889999998888877643
Q ss_pred hhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHH---HHHhhccCCCChhHHHHHHHHHHHHHHHHH
Q 005686 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIV---AFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
.+++.+.+.+.+.+ |++|..++..++.+.+..+-. + ...+ |.+.+.+.|.+..||.+|..++..+-...+
T Consensus 167 ~v~~~l~~g~ksKN---~R~R~e~l~~l~~li~~~G~~--~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 167 KMTPMLLDALKSKN---ARQRSECLLVIEYYITNAGIS--P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHCSG--G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCC---HHHHHHHHHHHHHHHHhcCCC--c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 46777777888877 999999999999998765422 1 2246 889999999999999999999998877664
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.63 E-value=2.2e-05 Score=69.37 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 005686 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~ 209 (683)
.+.+..+..++.+.|+.++..++.++..+.+..+...+. ..+..+++.++..+.+.+..+...|++|+..+.+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~-------~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM-------MVLERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH-------HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH-------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 456778888899999999999999999999987655442 4578999999999999999999999999999998
Q ss_pred ccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHh
Q 005686 210 LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (683)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 289 (683)
..|-.- ..+..+...+......+++-.+..+.+.+..+ .+. ...+.++.++...+.+.+..++..++.++.++
T Consensus 105 ~vpL~~-~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 105 DVPMGS-KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QPL---EDSKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp TCCBCH-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CBS---CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCCCH-HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---Ccc---cchHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 876322 23445677777777788888999999998887 221 22355667777777888999999999999888
Q ss_pred hcc
Q 005686 290 FEA 292 (683)
Q Consensus 290 ~~~ 292 (683)
+..
T Consensus 178 a~~ 180 (265)
T 3b2a_A 178 LNS 180 (265)
T ss_dssp GGG
T ss_pred hcc
Confidence 765
No 89
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.61 E-value=2.7e-05 Score=85.02 Aligned_cols=302 Identities=13% Similarity=0.060 Sum_probs=192.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCC--------hHHHHHHHHHHHHHHhhcCcCChHHHH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAAD--------RHIRSTVGTIVSVVVQLGGIAGWLELL 133 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~--------~~vr~~~~~~l~~i~~~~~~~~~~~l~ 133 (683)
+.++.+|.-|+..|...-... . ..+...|.+.+.+++ +.+|..++..||.+.-.. .-.+++
T Consensus 406 s~~~~ik~GAllaLGli~ag~----~----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS---~~eev~ 474 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGF----G----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS---ANIEVY 474 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTT----T----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC---CCHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCC----c----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC---CCHHHH
Confidence 346777877776665432221 1 124455666665433 678888888888765432 235677
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhh-cCCCHHHHHHHHHHHHHHHhccc
Q 005686 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 134 ~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~vr~~a~~~l~~~~~~~~ 212 (683)
+.|...+.+.+...+..+..+|+.+.-+.+. ..++..++..+ .+.+..+|..+..+|+.+...-+
T Consensus 475 e~L~~~L~dd~~~~~~~AalALGli~vGTgn--------------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 475 EALKEVLYNDSATSGEAAALGMGLCMLGTGK--------------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--------------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--------------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 7888888777777788888888887654442 23333444433 45677899999999987754433
Q ss_pred hhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
+ ..+.++..+.. +.++.+|..++-++.-..-..+.. ..++.++..+ ..+.++.+|..|...++-+.-.
T Consensus 541 e----~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~--~aIq~LL~~~---~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 541 E----LADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNN--SAVKRLLHVA---VSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp G----GGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCH--HHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTSS
T ss_pred H----HHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHh---ccCCcHHHHHHHHHHHHhhccC
Confidence 2 22233444332 467888888777665333332221 2333444443 3567788999998888876433
Q ss_pred CCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 005686 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (683)
Q Consensus 293 ~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~ 372 (683)
. .+. ++.++..+... .++.+|..+.
T Consensus 609 ~--~e~--------v~rlv~~L~~~---------------------------------------------~d~~VR~gAa 633 (963)
T 4ady_A 609 D--YTT--------VPRIVQLLSKS---------------------------------------------HNAHVRCGTA 633 (963)
T ss_dssp S--CSS--------HHHHTTTGGGC---------------------------------------------SCHHHHHHHH
T ss_pred C--HHH--------HHHHHHHHHhc---------------------------------------------CCHHHHHHHH
Confidence 1 111 22222222210 1246899999
Q ss_pred HHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC--CChhHH
Q 005686 373 AALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD--KFPLIR 450 (683)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr 450 (683)
.+++.++...|. +.++..+..+..+++ ..+|.+|+.++|.+..+..+...+.+.++...+.....| .++..|
T Consensus 634 lALGli~aGn~~---~~aid~L~~L~~D~d---~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~ 707 (963)
T 4ady_A 634 FALGIACAGKGL---QSAIDVLDPLTKDPV---DFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAK 707 (963)
T ss_dssp HHHHHHTSSSCC---HHHHHHHHHHHTCSS---HHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHhccCCCc---HHHHHHHHHHccCCC---HHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHH
Confidence 999988766664 356677777788888 999999999999999887766566777777777776654 567788
Q ss_pred HHHHHHHHHHH
Q 005686 451 SISCWTLSRFS 461 (683)
Q Consensus 451 ~~a~~~l~~l~ 461 (683)
..+..+.|-+.
T Consensus 708 fga~iAqGll~ 718 (963)
T 4ady_A 708 FGACVAQGIMN 718 (963)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 88888777764
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.60 E-value=3.3e-06 Score=82.55 Aligned_cols=290 Identities=12% Similarity=-0.001 Sum_probs=152.2
Q ss_pred ccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhch
Q 005686 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (683)
Q Consensus 84 ~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~ 163 (683)
..++...-..+.-.+++++.+++..+|+.+-..+..+++. ++..--....+.+-++++++-+|-.|+++++.+...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--
Confidence 4566666667778888899999999998777777666665 233335578888889999999999999999887541
Q ss_pred hccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHH
Q 005686 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (683)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (683)
..++.+.+.+.+++.|.++.||..|+-|...++...|+.. ..+++.+..++.|.++.+...++.
T Consensus 135 ------------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~~~~~~l~~ll~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 135 ------------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----KRWVNEAQEAASSDNIMVQYHALG 198 (355)
T ss_dssp ------------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----HTTHHHHHHHTTCSSHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHHhcCCCccHHHHHHH
Confidence 2367888899999999999999999999999987766543 345777778888999988888888
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhh
Q 005686 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (683)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~ 323 (683)
++..+....... +..+++.+... .-.++-....-+.++..++.. . -...-.++++.+..++...
T Consensus 199 lL~ei~~~d~~a----~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~--d---~~~~~~~~~~~l~~~L~~~------ 262 (355)
T 3tjz_B 199 LLYHVRKNDRLA----VSKMISKFTRH-GLKSPFAYCMMIRVASRQLED--E---DGSRDSPLFDFIESCLRNK------ 262 (355)
T ss_dssp HHHHHHTTCHHH----HHHHHHHHHSS-CCSCHHHHHHHHHHHTCC----------------------CCCCCS------
T ss_pred HHHHHHhhchHH----HHHHHHHHhcC-CCcChHHHHHHHHHHHHhccc--c---chhhHHHHHHHHHHHHcCC------
Confidence 888887654322 22233322211 001121122222222222211 0 0000112222222222110
Q ss_pred hhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCC
Q 005686 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD 403 (683)
Q Consensus 324 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 403 (683)
...+--.|..++-.+.. .+...+....+.+..++++++
T Consensus 263 ----------------------------------------~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d- 300 (355)
T 3tjz_B 263 ----------------------------------------HEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPK- 300 (355)
T ss_dssp ----------------------------------------SHHHHHHHHHHHTC------------CCCTHHHHHHSSS-
T ss_pred ----------------------------------------ChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCC-
Confidence 01233344444444333 223334455667777888888
Q ss_pred CChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHH
Q 005686 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (683)
Q Consensus 404 ~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 457 (683)
...|++|+..+..+....++.+..+ -..+...+.|++..++..|..+|
T Consensus 301 --~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 --AALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp --SSSHHHHHHCC-----------------------------------------
T ss_pred --chHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 8999999999999888665444333 34566788899988777776544
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.58 E-value=1.3e-05 Score=74.52 Aligned_cols=194 Identities=14% Similarity=0.105 Sum_probs=141.7
Q ss_pred CCHHhHHHHHHHHHh---------hcCCCCHHHHHHHHHHHHH-HhcCCChHH----HHHHHhhh-ccCCCHHHHHHHHH
Q 005686 9 PQEQGFNEICRLLEQ---------QISPSSTADKSQIWQQLQQ-YSQFPDFNN----YLAFILAR-AEGKSVEIRQAAGL 73 (683)
Q Consensus 9 ~~~~~~~~l~~~l~~---------~~s~~~~~~r~~A~~~L~~-~~~~p~~~~----~l~~il~~-~~~~~~~~R~~a~~ 73 (683)
|.++..++|...+.. +.+.|.. .|.+|.+.|.+ +...|+... .++..++- -.+.++.+-..+..
T Consensus 31 p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k-~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~ 109 (266)
T 2of3_A 31 PTDEHISQLQTLLGNQAKVSLMSQLFHKDFK-QHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE 109 (266)
T ss_dssp CCHHHHHHHHHHHHTTBCHHHHHHHTCSCHH-HHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHhcCCCHH-HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 566766666665444 4455667 78888888887 444554322 12332220 01457777777777
Q ss_pred HHHHHHHH---hhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhH
Q 005686 74 LLKNNLRT---AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEG 150 (683)
Q Consensus 74 ~l~~~i~~---~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~ 150 (683)
+|...+.. .-..+.+.....+...|+.-++++...+|..+-.++..+....++ ..+++.+...+.+.|+.+|..
T Consensus 110 ~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e 186 (266)
T 2of3_A 110 LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSE 186 (266)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHH
Confidence 77766532 223467777778889999999999999999999999888876543 457788888999999999999
Q ss_pred HHHHHHHHHhhchhccccCCCCCCcchhHhhH---HHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHh
Q 005686 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFL---PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS 218 (683)
Q Consensus 151 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~---~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 218 (683)
++..++.+.+..+-.. ...+ |.+.+.+.|++..||.+|+.|+..+....++.+...
T Consensus 187 ~l~~l~~li~~~G~~~------------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 187 CLLVIEYYITNAGISP------------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp HHHHHHHHHHHHCSGG------------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhcCCCc------------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999998877541 2346 899999999999999999999998877766554443
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.47 E-value=3e-06 Score=81.71 Aligned_cols=181 Identities=13% Similarity=0.090 Sum_probs=137.6
Q ss_pred cccccHHHHHHHHHHHHHhhcCc-----c---chhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch------hhh
Q 005686 362 VNVWNLRKCSAAALDVLSNVFGD-----E---ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI------KGL 427 (683)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~-----~---~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~------~~~ 427 (683)
...|..|..|.+.+..+....+. . .+..+.+.+...+.+.+ ..+...++.++..++.... ...
T Consensus 20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN---~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN---VVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS---HHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 46799999998888766554321 1 24456778888888888 9999999999999987653 223
Q ss_pred hhhHHHHHHHHhhc-cCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 005686 428 YPHLSEIVAFLIPL-LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (683)
Q Consensus 428 ~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l 506 (683)
..+...++|.++.. +.|..+.+|..|..++..+++... ....+++.+...+...+|.++..++.+|..+
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----------SITQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 45667788888764 899999999999988888775432 2244567777788888999999999999999
Q ss_pred HHHhccc---chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcccc
Q 005686 507 EEEAAEE---LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (683)
Q Consensus 507 ~~~~~~~---l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (683)
++..+.. ..+.++.+++.+...+++.+..++..+..+++.+-..+|...
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 9987643 356788899999999999888889999999999988888654
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.43 E-value=3.1e-05 Score=68.40 Aligned_cols=187 Identities=12% Similarity=0.050 Sum_probs=147.1
Q ss_pred CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-
Q 005686 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG- 124 (683)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~- 124 (683)
.++....|.++|. +.++.++.-|...+...++..-+.++....+.+...++..+.+++..|.-.+..|+..+....
T Consensus 31 ~e~~l~~L~~LL~---dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 31 DKRALFLILELAG---EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp CHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHh---ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC
Confidence 4567788888885 779999999999999998875444555666677777777778999999999999999999886
Q ss_pred -CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHH
Q 005686 125 -GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGS 203 (683)
Q Consensus 125 -~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~ 203 (683)
.++.+..+...+...+.+++.-.+.-+...++.+ + .. .....+...+.+.+.+.+.+++.+++.+
T Consensus 108 L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-v~------------~~~~~V~~~l~sLl~Skd~~vK~agl~~ 173 (265)
T 3b2a_A 108 MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-PL------------EDSKLVRTYINELVVSPDLYTKVAGFCL 173 (265)
T ss_dssp BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-BS------------CCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-cc------------cchHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 4678899999999999999999999999999887 1 11 1246778888889999999999999999
Q ss_pred HHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhh
Q 005686 204 VNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (683)
Q Consensus 204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (683)
+..+.....+ ...+..++..+-.+++++|+.+++.++..+..+...
T Consensus 174 L~eia~~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 174 FLNMLNSSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHGGGCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHhhcccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999865321 011223355555666778999999999999888765
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.38 E-value=5.9e-06 Score=79.59 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=139.0
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHhhcCc--------CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCC
Q 005686 99 LPCLGAADRHIRSTVGTIVSVVVQLGGI--------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (683)
Q Consensus 99 l~~l~~~~~~vr~~~~~~l~~i~~~~~~--------~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~ 170 (683)
-+.|.+.++..|..+..-+..++..... ..|..+.+.+...+.+.|..+...++.++..+++.++......
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~- 93 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN- 93 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH-
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc-
Confidence 3567899999999998888887765311 1255566777788899999999999999999998765432110
Q ss_pred CCCCcchhHhhHHHHHH-hhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 005686 171 PGLAECPINIFLPRLLQ-FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (683)
Q Consensus 171 ~~~~~~~~~~i~~~l~~-~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (683)
..+...+..++|.++. ++.++...+|..++.++..++.... ....+++.+...+++.++.++..++.+|..++
T Consensus 94 -~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 -AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp -HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 0001235667787775 5899999999999999988875431 12234667777888899999999999999998
Q ss_pred hhCccc---hhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 250 EVRPSF---LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 250 ~~~~~~---~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
..++.. ..+.++.+++.+..++.+.+.+||..|..++..+-..
T Consensus 168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 875532 3446677888888889999999999999999888665
No 95
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.37 E-value=5.5e-06 Score=92.84 Aligned_cols=425 Identities=11% Similarity=0.037 Sum_probs=218.9
Q ss_pred CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH---HhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh
Q 005686 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR---TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ 122 (683)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~---~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~ 122 (683)
+++++..++..+..++..+..-+..-+.+++..+. +.+.. ...+.++..+-.++.+.++.-...++++++.++.
T Consensus 461 ~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~~---~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~ 537 (997)
T 1vsy_5 461 TREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFCE---LNMSDLFELCESYYNKDDKASMIMSVEIVAGLVC 537 (997)
T ss_dssp CHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTCC---CCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccch---hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 37888877766653323333334445555665553 33433 3344455555556667777778899999999987
Q ss_pred hc--Cc-----CChHHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHh----hc
Q 005686 123 LG--GI-----AGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF----FQ 190 (683)
Q Consensus 123 ~~--~~-----~~~~~l~~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~----l~ 190 (683)
.. ++ ..|.-+.|.+...+. +-+++....-..++..++..... +...-++..+... ..
T Consensus 538 gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~Dp-----------rR~~~L~e~l~~~~~~l~~ 606 (997)
T 1vsy_5 538 GSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDL-----------RRSKTFFCHFINADGMFDR 606 (997)
T ss_dssp CCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCG-----------GGCHHHHHHHTCCCCCCCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCCh-----------hhhHHHHHHHHHhhcccCC
Confidence 53 21 357778899999998 56766666666666665554321 1234444444221 11
Q ss_pred C-CCH---HHHHHHHHHHHHHHhc-cchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHH
Q 005686 191 S-PHT---SLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (683)
Q Consensus 191 ~-~~~---~vr~~a~~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~ 265 (683)
+ .+. .-|...++.+..-..+ .+ ....++..++ ++++...+|+.+..+|..+.......--+....+++
T Consensus 607 ~~~ssf~~~~rl~ll~~~l~~~~wr~~-----~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~ 679 (997)
T 1vsy_5 607 ESDAATHQTSKIYMLRSILMSMEFRAP-----DVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLE 679 (997)
T ss_dssp CSSCCCCCCSSHHHHHHHHHHHTTSSC-----CCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccccc-----cHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Confidence 1 111 2233333333222222 12 1334455555 677888999999998887766542110111222222
Q ss_pred HHHHh---h----cCCChHHH------------------------------H----HHhhHHHHhhccCCchhhHHhhhh
Q 005686 266 YMLQV---N----KDTDDDVA------------------------------L----EACEFWHSYFEAQLPHENLKEFLP 304 (683)
Q Consensus 266 ~~~~~---~----~~~~~~vr------------------------------~----~a~~~l~~l~~~~~~~~~~~~~l~ 304 (683)
..... + ....+.+. . ..+..+...... .....+.+++.
T Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~-~~~~~l~~~~~ 758 (997)
T 1vsy_5 680 AERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARG-PNKVLLVPYLV 758 (997)
T ss_dssp HHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSG-GGHHHHHHHHT
T ss_pred hhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcC-CCccchhhhhH
Confidence 11110 0 00001111 1 111111111111 01122333333
Q ss_pred h-hHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHH-HHHHHHHHHhhc
Q 005686 305 R-LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC-SAAALDVLSNVF 382 (683)
Q Consensus 305 ~-l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~-a~~~l~~l~~~~ 382 (683)
. ++|.++......+ ++ .+... +..++..++...
T Consensus 759 ~~llP~ll~l~~~~d---------------------------------------~~------eL~~~~a~~~l~~ls~~~ 793 (997)
T 1vsy_5 759 DYVLPFLIGLVKHKD---------------------------------------VC------ALASLDPVRLYAGLGYMP 793 (997)
T ss_dssp TTTTTTTCTTSSCSH---------------------------------------HH------HHTTCCSHHHHHHTSSSC
T ss_pred HHHHHHHHHHhhcCc---------------------------------------HH------HHHhhHHHHHHHHHhcCC
Confidence 3 3333322211110 00 02222 444566665433
Q ss_pred -CccchhhhHHHHHHHHc-cCCCCChhhHHHHHHHHHHHHhcchhhh-hhhHHHHHHHHhhccCCCC-hhHHHHHHHHHH
Q 005686 383 -GDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKF-PLIRSISCWTLS 458 (683)
Q Consensus 383 -~~~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~ 458 (683)
+....+.++..+.+... +++ | .|.+++..+..+.-.---.+ ......+...++..|.|+. ..||..|..+|+
T Consensus 794 ~~~~~~~~~l~~l~~~~~~s~s---W-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLs 869 (997)
T 1vsy_5 794 IRKNHVAAIVDYVCSSNVALSS---N-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILS 869 (997)
T ss_dssp CCHHHHHHHHHHSSCTTTTSCS---S-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCc---H-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33444555555544444 344 9 99999888766544211011 1233568899999999999 999999999999
Q ss_pred HHHHHH-HhhhCCCcchhhHHHHHHHHHHHhcc------------CCccHHHHHHHHHHHHHHHhcccc--hHHHHHHHH
Q 005686 459 RFSKFI-VQDIGHQNGREQFEKVLMGLLKRILD------------TNKRVQEAACSAFATLEEEAAEEL--APRLEIILQ 523 (683)
Q Consensus 459 ~l~~~~-~~~~~~~~~~~~~~~~l~~l~~~l~d------------~~~~v~~~a~~al~~l~~~~~~~l--~~~l~~i~~ 523 (683)
-+.... . ......++..+.+.+.. .+...|-+|+.+|+.++...+-.+ -+++|+++.
T Consensus 870 gll~c~~~--------~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~ 941 (997)
T 1vsy_5 870 DIVHNWKE--------EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLS 941 (997)
T ss_dssp HHHHSCCS--------HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHH
T ss_pred HHHHcCCc--------hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHH
Confidence 886543 1 01112233333222211 111456788889999988887665 578888887
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005686 524 HLMMAFGKYQRRNLRIVYDAIGTLADA 550 (683)
Q Consensus 524 ~L~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (683)
.|.....+++ .....+=.+++.+-..
T Consensus 942 ~La~~~~~~~-~i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 942 NLSSWARTSG-MTGNAAKNTISEFKKV 967 (997)
T ss_dssp HHHTTSSSCS-SHHHHTHHHHHHHHHH
T ss_pred HHHHHhCCCC-chHHHHHHHHHHHHhc
Confidence 7766555532 2333455566655443
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.26 E-value=2.7e-05 Score=77.80 Aligned_cols=201 Identities=13% Similarity=0.118 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhc------cCCHhHHHHHHHHHhh-----hhhc-----CChHHHHHHHHHHHHHHhhcC
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYK------SMSPSNQQYIKSELLP-----CLGA-----ADRHIRSTVGTIVSVVVQLGG 125 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~------~l~~~~~~~i~~~Ll~-----~l~~-----~~~~vr~~~~~~l~~i~~~~~ 125 (683)
+..-++||-||..||..++.+-. ..+. .+--.++- .+++ .-..||..+|++++.+ ...+
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~----DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp 259 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS----KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLI 259 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT----THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTS
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccH----HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCC
Confidence 67889999999999999876521 1222 33333333 2332 2478999999999999 6554
Q ss_pred cCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 005686 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (683)
Q Consensus 126 ~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~ 205 (683)
+. ..++..+...+..+.|.+|.+|+..+..+ .+.+. . ++.+++.++.+|.|.+.+||..|..+|.
T Consensus 260 ~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~--------~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLi 324 (800)
T 3oc3_A 260 GP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVE--------D-KDGLCRKLVSLLSSPDEDIKLLSAELLC 324 (800)
T ss_dssp CS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCC--------C-HHHHHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred hh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHH--------H-HHHHHHHHHhhcCCcccHHHHHHHHHhh
Confidence 43 34455555556788999999999999887 22111 1 6889999999999999999999999987
Q ss_pred HHHhccchhhHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhhcCCChHHHHHHh
Q 005686 206 QFIMLMPSALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (683)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~ 283 (683)
-++ .|. .+..++..++..+.+- -...-..++..|..++......-.. +.+++-++-.+.+.-.+||..++
T Consensus 325 PIA--~p~----~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~d--p~LVPRL~PFLRHtITSVR~AVL 396 (800)
T 3oc3_A 325 HFP--ITD----SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIP--PERLKDIFPCFTSPVPEVRTSIL 396 (800)
T ss_dssp TSC--CSS----THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCC--SGGGGGTGGGGTCSSHHHHHHHH
T ss_pred hhc--chh----hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccC--hHHHHHHHhhhcCCcHHHHHHHH
Confidence 776 232 3444455555544321 1223355666777776654321111 14445455566777778888887
Q ss_pred hHHHHhh
Q 005686 284 EFWHSYF 290 (683)
Q Consensus 284 ~~l~~l~ 290 (683)
.++.++.
T Consensus 397 ~TL~tfL 403 (800)
T 3oc3_A 397 NMVKNLS 403 (800)
T ss_dssp HHTTTCC
T ss_pred HHHHHHH
Confidence 7766654
No 97
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.11 E-value=3.4e-07 Score=76.90 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=72.5
Q ss_pred hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHh
Q 005686 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (683)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (683)
.+...+.+.+.+++++ |.+|..|+.+|+.+... . ++.++..++|+++.||..|+++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~---~~vR~~A~~~L~~~~~~-------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADEN---KWVRRDVSTALSRMGDE-------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp -----------CCSSC---CCSSSSCCSSTTSCSST-------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred ccccHHHHHHHhcCCC---HHHHHHHHHHHHHhCch-------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 3455666777777777 88888888877654321 1 3666777788888888888888888742
Q ss_pred hhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 005686 467 DIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIG 545 (683)
Q Consensus 467 ~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~ 545 (683)
...++.|...++|+++.||..|+++|+.+-. +..++.|...+++.+..++..+..+|+
T Consensus 72 -----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 -----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2345666667778888888888888887631 233444555555544455556665554
No 98
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.02 E-value=6.5e-06 Score=68.92 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=71.2
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCC
Q 005686 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (683)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (683)
++.+.+.+.+++ |.+|..++.+++.+.. +..++.+...++|+++.||..|+++|+++..
T Consensus 44 ~~~L~~~L~d~~---~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------- 102 (131)
T 1te4_A 44 FEPLLESLSNED---WRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------- 102 (131)
T ss_dssp HHHHHHGGGCSC---HHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence 477788888888 9999999999987753 2346777777889999999999999998742
Q ss_pred CcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHH
Q 005686 471 QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (683)
Q Consensus 471 ~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~ 505 (683)
...++.|...++|+++.||..|+.+|+.
T Consensus 103 -------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 -------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2456777888888899999999999864
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.01 E-value=0.0054 Score=63.92 Aligned_cols=322 Identities=12% Similarity=0.115 Sum_probs=181.4
Q ss_pred HHHHHHhhhhh-cCChHHHHHHHHHHHHHHhhcCcCCh-HHHHHHHHHHhcc--CChhHHhHHHHHHHHHHhhchhccc-
Q 005686 93 YIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGW-LELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVLD- 167 (683)
Q Consensus 93 ~i~~~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~-~~l~~~l~~~l~s--~~~~~r~~al~~l~~l~~~~~~~~~- 167 (683)
.-.+.|...+. ..-..=|+.+...+..+++.. +... ..-++.++..++. .|.+....+++.|..+.......-.
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~ 99 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE 99 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc
Confidence 33345555554 345566888888888887643 2222 1225556565543 4666777788888666543322100
Q ss_pred ---cCCCCCC-cch------hHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHH---HHHHHHHhhhCCCC
Q 005686 168 ---SDVPGLA-ECP------INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD---QYLQGLFLLSNDPS 234 (683)
Q Consensus 168 ---~~~~~~~-~~~------~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~---~~l~~l~~~~~~~~ 234 (683)
+....-+ ... -.+-++.++..+++.+..+|..++++|..++..-|......+- .-++.|..+++|+.
T Consensus 100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r 179 (651)
T 3grl_A 100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179 (651)
T ss_dssp --------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS
T ss_pred ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch
Confidence 0000000 000 1345778899999999999999999999999877765554432 35788899999999
Q ss_pred HHHHHHHHHHHHHHHhhCccc-----hhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCC-chhhHH--hhhhhh
Q 005686 235 AEVRKLVCAAFNLLIEVRPSF-----LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL-PHENLK--EFLPRL 306 (683)
Q Consensus 235 ~~~~~~~~~~l~~l~~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~--~~l~~l 306 (683)
+.+|..++-.|..+....+.. ++.-++.++..+-.--......+...++.++.++.+... ....+. .+++++
T Consensus 180 E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L 259 (651)
T 3grl_A 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRM 259 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 999999999999999876542 112234444443322112244677888999999887621 112222 123333
Q ss_pred HHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHH-----HHHHHHHHhh
Q 005686 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS-----AAALDVLSNV 381 (683)
Q Consensus 307 ~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a-----~~~l~~l~~~ 381 (683)
.+ .+...+ +...|+-++.+ .+++..+...
T Consensus 260 ~~----LL~~~~------------------------------------------~~~~W~~Qk~~N~~~~L~iIrlLv~~ 293 (651)
T 3grl_A 260 KP----WFEVGD------------------------------------------ENSGWSAQKVTNLHLMLQLVRVLVSP 293 (651)
T ss_dssp GG----GGCCCS------------------------------------------CSSCCCHHHHHHHHHHHHHHHHHTCT
T ss_pred HH----HhCCCc------------------------------------------cccccHHHHHHHHHHHHHHHHHHhCC
Confidence 22 221100 11346543322 2233333222
Q ss_pred cCc---------cc-hhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh---hhhh-------hHHHHHHHHhhc
Q 005686 382 FGD---------EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK---GLYP-------HLSEIVAFLIPL 441 (683)
Q Consensus 382 ~~~---------~~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~---~~~~-------~~~~l~~~l~~~ 441 (683)
-+. .+ -..+++.+.+.+.++. ....+|..|+.+++.+..+.+. .+.. ..+.++..++..
T Consensus 294 ~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~-~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~ 372 (651)
T 3grl_A 294 NNPPGATSSCQKAMFQCGLLQQLCTILMATG-VPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSM 372 (651)
T ss_dssp TSCHHHHHHHHHHHHHTTHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHccCC-CCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHH
Confidence 111 00 1134555556655431 2267899999999999887642 1211 012244444444
Q ss_pred cCC-CChhHHHHHHHHHHHHHH
Q 005686 442 LDD-KFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 442 l~d-~~~~vr~~a~~~l~~l~~ 462 (683)
+.+ ....+|.+|+.++..+..
T Consensus 373 ~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 373 VNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHHHHHHh
Confidence 554 457889999999998873
No 100
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.01 E-value=0.0032 Score=65.62 Aligned_cols=155 Identities=11% Similarity=0.082 Sum_probs=114.4
Q ss_pred CChHHHHHHHHHHhccC-ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC--CCHHHHHHHHHH
Q 005686 127 AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGS 203 (683)
Q Consensus 127 ~~~~~l~~~l~~~l~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~vr~~a~~~ 203 (683)
..-.+-++.|..-+++. -..-|+.|+..|..+.+.++... ...-++.++..|++ .|.++-+.++.+
T Consensus 17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~V-----------g~~~l~~li~~L~~d~~D~e~v~~~Let 85 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEV-----------GIQAMEHLIHVLQTDRSDSEIIGYALDT 85 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHH-----------HHHTHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHh-----------hhhhHHHHHHHHhcccccHHHHHHHHHH
Confidence 34456677777777654 46789999999999888766432 24457888888866 477888889999
Q ss_pred HHHHHhccchh----------------hHHhH---HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHH---
Q 005686 204 VNQFIMLMPSA----------------LFVSM---DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--- 261 (683)
Q Consensus 204 l~~~~~~~~~~----------------~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~--- 261 (683)
|..++...+.. +.+.+ .+-++.|+.+++..+..+|..++++|..++...+......+-
T Consensus 86 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p 165 (651)
T 3grl_A 86 LYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSP 165 (651)
T ss_dssp HHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHST
T ss_pred HHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc
Confidence 98776533210 11111 134677888888899999999999999999998886655543
Q ss_pred HHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 262 ~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
.=++.++..+.+..+.+|..|+-++..+++.
T Consensus 166 ~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 166 MGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp THHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 3456677788888899999999999999887
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.91 E-value=0.00013 Score=73.15 Aligned_cols=188 Identities=12% Similarity=0.119 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChH
Q 005686 29 STADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRH 108 (683)
Q Consensus 29 ~~~~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~ 108 (683)
.. +|..|.|.|..+..-|+-...+..++.......-++|+.+.+.||.. .. .+.. ...+.+.++.+|.+.+..
T Consensus 242 AP-VRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D---LL~~--Ld~Vv~aVL~GL~D~DDD 314 (800)
T 3oc3_A 242 AP-VRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-KE---FVED--KDGLCRKLVSLLSSPDED 314 (800)
T ss_dssp CH-HHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG---GCCC--HHHHHHHHHHHTTCSSHH
T ss_pred ee-hHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH-HH---HHHH--HHHHHHHHHhhcCCcccH
Confidence 45 89999999988843333234444444222256789999998888866 11 2222 678888899999999999
Q ss_pred HHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCCh--hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHH
Q 005686 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI--NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (683)
Q Consensus 109 vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 186 (683)
||..+|.++..++ .+...+.++..+..++.+.+. ......+..|+.++..-... . ..+.++|.+.
T Consensus 315 VRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a-~---------~dp~LVPRL~ 381 (800)
T 3oc3_A 315 IKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL-S---------IPPERLKDIF 381 (800)
T ss_dssp HHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC-C---------CCSGGGGGTG
T ss_pred HHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc-c---------cChHHHHHHH
Confidence 9999999999998 467889999999998876432 23445677788877755321 1 1248899999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHh-hhCCCCHHHHHHHHHHHH
Q 005686 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL-LSNDPSAEVRKLVCAAFN 246 (683)
Q Consensus 187 ~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~l~ 246 (683)
.++.++-+.||.++++++..+. ...++..+++ .+-+++++++..+.++|.
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999997765 1223444443 334578899999988886
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.78 E-value=0.00064 Score=60.89 Aligned_cols=147 Identities=17% Similarity=0.181 Sum_probs=111.7
Q ss_pred HHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHH-HhccCChhHHhHHHHHHHHHHhhchhccccC
Q 005686 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT-CLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (683)
Q Consensus 91 ~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~-~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~ 169 (683)
.+.+......+..++...+|-.++.+++.. . .-++.++.+.. ...+.++.+|+.+..+++.++.....
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-----
Confidence 445555555566677889999999977766 2 23788999988 66788999999999999988862221
Q ss_pred CCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 005686 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (683)
Q Consensus 170 ~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (683)
+..++.+.....|++..||..|......++.. + .+...-..+++.+-.+..|++..||+.+...|..+.
T Consensus 138 ---------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 138 ---------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp ---------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 22566788899999999999999887654432 2 223334457888888889999999999999999999
Q ss_pred hhCccchhhh
Q 005686 250 EVRPSFLEPH 259 (683)
Q Consensus 250 ~~~~~~~~~~ 259 (683)
...|+.+...
T Consensus 207 K~~Pd~V~~~ 216 (240)
T 3l9t_A 207 KKFPDLVKIE 216 (240)
T ss_dssp TTCHHHHHHH
T ss_pred hhCHHHHHHH
Confidence 9999876543
No 103
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.72 E-value=0.047 Score=54.31 Aligned_cols=183 Identities=14% Similarity=0.096 Sum_probs=116.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~ 141 (683)
..++..++.|++++-+. |... |+..+.-.+.++.+..+++..||.++...|..+++. ...+.+...|.++++
T Consensus 39 kg~~k~K~LaaQ~I~kf----fk~F-P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLq 110 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKF----FKHF-PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQ 110 (507)
T ss_dssp GSCHHHHHHHHHHHHHH----GGGC-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHH----HhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHh
Confidence 55789999999888544 4443 456666677888899999999999999999988876 446888999999999
Q ss_pred cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchh-hHHhHH
Q 005686 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVSMD 220 (683)
Q Consensus 142 s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~ 220 (683)
..++..+...=.+|..+.+..+. ..+..++..+..++..+|..+++.|..-+..++.. +...++
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk---------------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E 175 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAK---------------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE 175 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHH---------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChH---------------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHH
Confidence 98887777777777777765542 22333333333357899999999987666554432 223333
Q ss_pred HH-HHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHh
Q 005686 221 QY-LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (683)
Q Consensus 221 ~~-l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~ 270 (683)
.+ ...+.+.+.|-...-....+..|..+ ..+ ... +..+.+++++...
T Consensus 176 ~~i~~~ikK~L~DVT~~EF~L~m~lL~~l-kl~-~t~-~g~qeLv~ii~eQ 223 (507)
T 3u0r_A 176 ELILTESKKVLEDVTGEEFVLFMKILSGL-KSL-QTV-SGRQQLVELVAEQ 223 (507)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHTS-GGG-SSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhc-ccc-cCc-hHHHHHHHHHHHH
Confidence 33 34445555554333223333333211 111 112 3345677766654
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.69 E-value=0.075 Score=57.91 Aligned_cols=153 Identities=12% Similarity=0.032 Sum_probs=89.9
Q ss_pred hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHH-HHhhhhhcCChHHHHHHHHHHHHHHhhcC--
Q 005686 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS-ELLPCLGAADRHIRSTVGTIVSVVVQLGG-- 125 (683)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~-~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~-- 125 (683)
+.+ +++.|. +.++..|..|+..|.+.+... ....-..++.+.. .+-++|.+++..||..++.+++.++...+
T Consensus 36 i~P-ll~~L~---S~~~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 36 ILP-VLKDLK---SPDAKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp THH-HHHHHS---SSCCSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHH-HHHHcC---CCCHHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 444 344454 678999999999999887321 0000112222222 33446778999999999999999986542
Q ss_pred -------cCChHHHHHHHHHHh---ccC-------Ch-------hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhh
Q 005686 126 -------IAGWLELLQALVTCL---DSN-------DI-------NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (683)
Q Consensus 126 -------~~~~~~l~~~l~~~l---~s~-------~~-------~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (683)
.+.|+.+...+.+.. ... .. ......+.+|..+++.....+.. -.....
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~-------v~~~~~ 183 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA-------VATKQT 183 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHTCHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-------HHhccc
Confidence 245665554443322 111 11 12234556666677655443211 001345
Q ss_pred HHHHHHhhcC---CCHHHHHHHHHHHHHHHhccch
Q 005686 182 LPRLLQFFQS---PHTSLRKLSLGSVNQFIMLMPS 213 (683)
Q Consensus 182 ~~~l~~~l~~---~~~~vr~~a~~~l~~~~~~~~~ 213 (683)
++.++..+.+ ...+++..|+.||..+.+..++
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHH
Confidence 6666666643 3468999999999999877543
No 105
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.57 E-value=0.0017 Score=72.91 Aligned_cols=377 Identities=12% Similarity=0.099 Sum_probs=195.9
Q ss_pred CCCHHHHHHHHHHHHHHH--HHhhccCC-HhHHHHHHHHHhhhhh-cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHH
Q 005686 62 GKSVEIRQAAGLLLKNNL--RTAYKSMS-PSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALV 137 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i--~~~w~~l~-~~~~~~i~~~Ll~~l~-~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~ 137 (683)
+.+..-...||-++--.+ .++|+.-. ....+.+...|..++. +-.+.....=..++..+...-.+...+.+++.+.
T Consensus 519 ~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~ 598 (997)
T 1vsy_5 519 KDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFI 598 (997)
T ss_dssp SSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHH
Confidence 445555556666666555 35675422 2344566666666776 4555555555666666666555666667777773
Q ss_pred HH-----hccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc-
Q 005686 138 TC-----LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM- 211 (683)
Q Consensus 138 ~~-----l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~- 211 (683)
.. .++.+.-..-..+..|..++...+..+.. ...++..++ +.++...||.+.-++|..++...
T Consensus 599 ~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~---------~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 599 NADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD---------VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp CCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC---------CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc---------HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 31 11222212223344555555444433221 245555555 88889999999999888776443
Q ss_pred -ch--hhH---------------------HhHHHHHHHHHhhhC-------C--CC----HH---HHHHHHHHHHHHHhh
Q 005686 212 -PS--ALF---------------------VSMDQYLQGLFLLSN-------D--PS----AE---VRKLVCAAFNLLIEV 251 (683)
Q Consensus 212 -~~--~~~---------------------~~~~~~l~~l~~~~~-------~--~~----~~---~~~~~~~~l~~l~~~ 251 (683)
|. ... +.+...++.+++.+. + +. .+ ..+.++..+...+..
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~ 747 (997)
T 1vsy_5 668 NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARG 747 (997)
T ss_dssp CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSG
T ss_pred ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcC
Confidence 10 000 011111111111111 0 10 01 122333333332222
Q ss_pred C-ccchhhhHHH-HHHHHHHhhcCCCh-HHHHH-HhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhc
Q 005686 252 R-PSFLEPHLRN-LFEYMLQVNKDTDD-DVALE-ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (683)
Q Consensus 252 ~-~~~~~~~l~~-l~~~~~~~~~~~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~ 327 (683)
. ...+.++++. +++.++...+..++ ++... |..++..++..+... .+++.++..+ ...
T Consensus 748 ~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~----~~~~~~l~~l----~~~---------- 809 (997)
T 1vsy_5 748 PNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRK----NHVAAIVDYV----CSS---------- 809 (997)
T ss_dssp GGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCH----HHHHHHHHHS----SCT----------
T ss_pred CCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCH----HHHHHHHHHH----HHH----------
Confidence 1 1224444444 55555444444333 33333 323333343322111 1222222221 100
Q ss_pred ccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhh----cCccchhhhHHHHHHHHccCCC
Q 005686 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV----FGDEILPTLMPVIQAKLSASGD 403 (683)
Q Consensus 328 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~----~~~~~~~~l~~~l~~~l~~~~~ 403 (683)
...+..| .|.++...+..+.-. +...-...+...+..++.++..
T Consensus 810 -------------------------------~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~ 857 (997)
T 1vsy_5 810 -------------------------------NVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQF 857 (997)
T ss_dssp -------------------------------TTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSC
T ss_pred -------------------------------HhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCcc
Confidence 0012469 888888777665432 1333335677777777765431
Q ss_pred CChhhHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHhhccCC------------CChhHHHHHHHHHHHHHHHHHhhhCC
Q 005686 404 EAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDD------------KFPLIRSISCWTLSRFSKFIVQDIGH 470 (683)
Q Consensus 404 ~~~~~r~aal~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d------------~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (683)
.++|+.|..+|+.+.... .. .....++..+...+.. .....|.+|+..||.+...++-
T Consensus 858 --~EVRe~Aa~tLsgll~c~~~~---~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py---- 928 (997)
T 1vsy_5 858 --VEVRVRAASILSDIVHNWKEE---QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPY---- 928 (997)
T ss_dssp --HHHHHHHHHHHHHHHHSCCSH---HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSC----
T ss_pred --HHHHHHHHHHHHHHHHcCCch---hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCC----
Confidence 689999999999998765 31 1112334444444311 1125778888899998887653
Q ss_pred Ccc--hhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 471 QNG--REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 471 ~~~--~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
.. ++++++++..|.....++ ..|+..+-.+|+.|-+.-
T Consensus 929 -~vP~P~w~P~~l~~La~~~~~~-~~i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 929 -VFPLPPWIPKNLSNLSSWARTS-GMTGNAAKNTISEFKKVR 968 (997)
T ss_dssp -CSSCCTHHHHHHHHHHTTSSSC-SSHHHHTHHHHHHHHHHT
T ss_pred -CCCCCcccHHHHHHHHHHhCCC-CchHHHHHHHHHHHHhcc
Confidence 33 678888888887777774 448999999999886543
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.54 E-value=0.15 Score=55.45 Aligned_cols=151 Identities=15% Similarity=0.082 Sum_probs=88.6
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHH-HHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 005686 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP-RLLQFFQSPHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 132 l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (683)
++|.+ +.++|+++..|..|+.++..+++.....-. -....+++ .+...+.|++..||.+|..+|..++..
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l--------~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKL--------LLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHH--------HHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHH--------HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44544 457899999999999999999974332100 01133444 456779999999999999999988755
Q ss_pred cchhhHHhHH--HHHHHHHhh-------hC-------CCC-------HHHHHHHHHHHHHHHhhCccchhh-----hHHH
Q 005686 211 MPSALFVSMD--QYLQGLFLL-------SN-------DPS-------AEVRKLVCAAFNLLIEVRPSFLEP-----HLRN 262 (683)
Q Consensus 211 ~~~~~~~~~~--~~l~~l~~~-------~~-------~~~-------~~~~~~~~~~l~~l~~~~~~~~~~-----~l~~ 262 (683)
.+..+..++- .+++.|..+ +. ... .++...++.+|..+++...+.+.. .++.
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR 186 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence 4333222211 122222221 11 011 123345666777777766554422 2233
Q ss_pred HHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 263 l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
++..+... .....+++..|++++..+.+.
T Consensus 187 l~~~L~~~-~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 187 LLFRLISA-DIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHHHHH-CCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-CCCcHHHHHHHHHHHHHHhcc
Confidence 33333222 223467899999999998775
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.41 E-value=0.0011 Score=60.66 Aligned_cols=111 Identities=11% Similarity=-0.026 Sum_probs=81.9
Q ss_pred hhHHHHHHHHccCCCCCh--hhHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHH
Q 005686 389 TLMPVIQAKLSASGDEAW--KDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~--~~r~aal~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
..+|.+.+.+++++ . ..+..|..++..++.+..+...... ...+|.++..|.++++.++..|+++|..++..-.
T Consensus 8 ~~i~~lV~lL~s~~---~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 8 MTLERAVSMLEADH---MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCHHHHHHTCCSSC---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHhCCCC---chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 45777888888877 6 7777788888888865432221222 2368999999999999999999999999986322
Q ss_pred hhhCCCcchhhH--HHHHHHHHHHhcc-CCccHHHHHHHHHHHHHH
Q 005686 466 QDIGHQNGREQF--EKVLMGLLKRILD-TNKRVQEAACSAFATLEE 508 (683)
Q Consensus 466 ~~~~~~~~~~~~--~~~l~~l~~~l~d-~~~~v~~~a~~al~~l~~ 508 (683)
. .+..+ ...+|.|++.|.+ .+..++..|+.+|.++..
T Consensus 85 ~------nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 85 D------NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp H------HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred H------HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 1 12222 3478899999974 578999999999998864
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.38 E-value=0.0026 Score=58.20 Aligned_cols=174 Identities=12% Similarity=0.132 Sum_probs=109.7
Q ss_pred HHHHHHHhccCCh--hHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 005686 133 LQALVTCLDSNDI--NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 133 ~~~l~~~l~s~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (683)
+|.+.+.+.++++ .++..+...+..++......-.. -.-...+|.|++.|.++++.++..|+.+|..+...
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~-------I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKR-------VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH-------HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHH-------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 6788888988887 77788888888888655432110 01134679999999999999999999999999864
Q ss_pred cchhhHHhHH--HHHHHHHhhhC-CCCHHHHHHHHHHHHHHHhhCc---cchhhhHHHHHHHHH---Hhh---------c
Q 005686 211 MPSALFVSMD--QYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP---SFLEPHLRNLFEYML---QVN---------K 272 (683)
Q Consensus 211 ~~~~~~~~~~--~~l~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~---~~~~~~l~~l~~~~~---~~~---------~ 272 (683)
.++. ...+. ..++.|..++. .++.++++.+..+|..+..... .....-++.++..+. ... .
T Consensus 83 ~~~n-k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 83 DNDN-KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp CHHH-HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred CHHH-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccc
Confidence 3322 11121 35677777776 4688999999988888875432 112212222222111 011 1
Q ss_pred CCChHHHHHHhhHHHHhhccC-CchhhHHhhhhhhHHHHHhhcc
Q 005686 273 DTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMI 315 (683)
Q Consensus 273 ~~~~~vr~~a~~~l~~l~~~~-~~~~~~~~~l~~l~~~l~~~l~ 315 (683)
..+.+++..|..+|.+++... ..++.+.. .+.+++.|+..+.
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVR 204 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHH
Confidence 136789999999999997642 23333332 2335555554443
No 109
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.35 E-value=0.11 Score=49.27 Aligned_cols=194 Identities=10% Similarity=0.108 Sum_probs=126.8
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcCc---------CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccc
Q 005686 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI---------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (683)
Q Consensus 97 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~---------~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~ 167 (683)
.|+..|..-+-.-|+.++.+.+.+.+.... ...|+++..+..+..+++...- +-..|+.+++.-. +.
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRecir~e~--la 157 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLRECIRHEP--LA 157 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHHHTSHH--HH
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHHHHhHH--HH
Confidence 444444445556666666666666654311 1358888889888877664221 1122333332110 00
Q ss_pred cCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc----hhhHHhHHHHHHHHHhhhCCCCHHHHHHHHH
Q 005686 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (683)
Q Consensus 168 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (683)
.. + .-...+-.+++..+.++-+|..-|+.++..+...-. +.+..+.+.++....+++.+++--.|..+++
T Consensus 158 ~~---i---L~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 158 KI---I---LWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp HH---H---HHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HH---H---hccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 00 0 001123356788899999999999999988875432 3445556677777778888888889999999
Q ss_pred HHHHHHhh--CccchhhhHH--HHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHH
Q 005686 244 AFNLLIEV--RPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (683)
Q Consensus 244 ~l~~l~~~--~~~~~~~~l~--~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 300 (683)
.|+.++.. ....+..|+. .-+..++..+++....++..|+-.+.-++.+|..+..+.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~ 292 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPIL 292 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHH
Confidence 99999854 5567777774 667788889999999999999998887766654444343
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.18 E-value=0.017 Score=51.88 Aligned_cols=159 Identities=11% Similarity=0.125 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhh-hhhcCChHHH
Q 005686 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP-CLGAADRHIR 110 (683)
Q Consensus 32 ~r~~A~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~-~l~~~~~~vr 110 (683)
+-+.|...+..+. .+.+..+..-|.. +...++|..|+-+|... . . . ..+...+.. .-.++...||
T Consensus 56 ~~~~a~~~~~~~~--~~~~~~la~~L~~--~~~deVR~~Av~lLg~~-~----~----~-~~~L~~ir~~va~D~~WrVr 121 (240)
T 3l9t_A 56 EEQRALTDYKSND--GEYIKKLAFLAYQ--SDVYQVRMYAVFLFGYL-S----K----D-KEILIFMRDEVSKDNNWRVQ 121 (240)
T ss_dssp HHHHHHHHHHHSC--HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHT-T----T----S-HHHHHHHHHTGGGCSCHHHH
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHh--CcchHHHHHHHHHHHhc-c----C----c-HHHHHHHHHHhCCCCCccHH
Confidence 4445554444433 2333345555553 55679999998876544 1 1 1 234444444 3357899999
Q ss_pred HHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhc
Q 005686 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (683)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~ 190 (683)
..++.+++.++....+.. .++.+...+.+++..+|..+...+.-.+.. +. + ...-..++|.+.....
T Consensus 122 e~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~-~--------k~dp~~ll~iL~~L~~ 188 (240)
T 3l9t_A 122 EVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PY-F--------KENPNEAIRRIADLKE 188 (240)
T ss_dssp HHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TT-T--------TTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-ch-h--------hcCHHHHHHHHHHhcC
Confidence 999999999997332322 567888999999999999998887643332 11 1 1234678888888899
Q ss_pred CCCHHHHHHHHHHHHHHHhccchhhHH
Q 005686 191 SPHTSLRKLSLGSVNQFIMLMPSALFV 217 (683)
Q Consensus 191 ~~~~~vr~~a~~~l~~~~~~~~~~~~~ 217 (683)
|++.-||++.-..|..+....|+.+..
T Consensus 189 D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 189 DVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 999999999999999998876654443
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.91 E-value=0.00024 Score=65.61 Aligned_cols=186 Identities=20% Similarity=0.168 Sum_probs=120.5
Q ss_pred hhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhH
Q 005686 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (683)
Q Consensus 100 ~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ 179 (683)
.++.++++.||..++..+ + ...+..+++++++.+|..+...+ +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~-------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------------- 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P-------VEALTPLIRDSDEVVRRAVAYRL-------PR--------------- 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C-------GGGGGGGTTCSSHHHHHHHHTTS-------CS---------------
T ss_pred HHhcCCCHHHHHHHHHhC-------C-------HHHHHHHccCcCHHHHHHHHHHC-------CH---------------
Confidence 355788999999988743 1 12356677899999999887532 10
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 005686 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (683)
Q Consensus 180 ~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 259 (683)
+.+...++|+++.||..+...+ +. +.+..+++|+++.||..+...+ .+
T Consensus 101 ---~~L~~ll~D~d~~VR~~aA~~l-------~~----------~~L~~L~~D~d~~VR~~aA~~l------~~------ 148 (244)
T 1lrv_A 101 ---EQLSALMFDEDREVRITVADRL-------PL----------EQLEQMAADRDYLVRAYVVQRI------PP------ 148 (244)
T ss_dssp ---GGGGGTTTCSCHHHHHHHHHHS-------CT----------GGGGGGTTCSSHHHHHHHHHHS------CG------
T ss_pred ---HHHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHHHHcCCCHHHHHHHHHhc------CH------
Confidence 1245678999999999988743 21 1244557899999999888631 11
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCC
Q 005686 260 LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (683)
Q Consensus 260 l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~ 339 (683)
+.+....+|+++.||..+... +. .. ++..+.
T Consensus 149 -----~~l~~l~~D~d~~VR~~aa~~---l~-----~~------------ll~~ll------------------------ 179 (244)
T 1lrv_A 149 -----GRLFRFMRDEDRQVRKLVAKR---LP-----EE------------SLGLMT------------------------ 179 (244)
T ss_dssp -----GGGGGTTTCSCHHHHHHHHHH---SC-----GG------------GGGGST------------------------
T ss_pred -----HHHHHHHcCCCHHHHHHHHHc---CC-----HH------------HHHHHH------------------------
Confidence 122345788999999988763 10 00 111110
Q ss_pred CcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHH
Q 005686 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (683)
Q Consensus 340 ~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l 419 (683)
.+.+|.+|..++..+ +. +.+..++.+++ |.+|.++...++
T Consensus 180 ---------------------~D~d~~VR~aaa~~l-------~~-------~~L~~Ll~D~d---~~VR~~aa~~l~-- 219 (244)
T 1lrv_A 180 ---------------------QDPEPEVRRIVASRL-------RG-------DDLLELLHDPD---WTVRLAAVEHAS-- 219 (244)
T ss_dssp ---------------------TCSSHHHHHHHHHHC-------CG-------GGGGGGGGCSS---HHHHHHHHHHSC--
T ss_pred ---------------------cCCCHHHHHHHHHhC-------CH-------HHHHHHHcCCC---HHHHHHHHHcCC--
Confidence 012367998877642 21 33455678888 999999998864
Q ss_pred HhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHH
Q 005686 420 AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (683)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 458 (683)
.+.+... +|+++.||.++...||
T Consensus 220 ---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1333334 9999999999876554
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.69 E-value=0.59 Score=46.62 Aligned_cols=281 Identities=14% Similarity=0.088 Sum_probs=161.5
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-hcCCCh----HHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCC
Q 005686 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQY-SQFPDF----NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (683)
Q Consensus 13 ~~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~-~~~p~~----~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~ 87 (683)
....-..+|.... ++.. .++-|.+.+-+| +..|+. +..++.++. +.+..+|..|.--| +.--.
T Consensus 27 ~~~~y~~Il~~~k-g~~k-~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcE---Ded~~IR~qaik~L-------p~~ck 94 (507)
T 3u0r_A 27 HKDAYQVILDGVK-GGTK-EKRLAAQFIPKFFKHFPELADSAINAQLDLCE---DEDVSIRRQAIKEL-------PQFAT 94 (507)
T ss_dssp GHHHHHHHHHGGG-SCHH-HHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHT---CSSHHHHHHHHHHG-------GGGCC
T ss_pred cHHHHHHHHHhcC-CCHH-HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh---cccHHHHHHHHHhh-------HHHhh
Confidence 3455666776554 4566 788888888885 567764 555666554 67889998776433 22222
Q ss_pred HhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccc
Q 005686 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (683)
Q Consensus 88 ~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~ 167 (683)
.+....+-..|.++|..+++.-+..+-..+..+.+.++.+....++..+.. ++..+|+..+.-+..=+...+....
T Consensus 95 ~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l 170 (507)
T 3u0r_A 95 GENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVL 170 (507)
T ss_dssp TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred hhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhc
Confidence 255677888899999988888888999999999998877666666666665 4678898877777555554443321
Q ss_pred cCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhh------CCCCHHHHHHH
Q 005686 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS------NDPSAEVRKLV 241 (683)
Q Consensus 168 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~~~~~ 241 (683)
. ...-..+...+.+.+.|....==...+.+|..+--. ... ....++++.+.... +-.|.+.....
T Consensus 171 ~------~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~--~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRl 241 (507)
T 3u0r_A 171 T------KEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSL--QTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRL 241 (507)
T ss_dssp C------HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGG--SSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHH
T ss_pred c------HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccc--cCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHH
Confidence 1 122244556677778775543323333333222111 001 12234444444432 11356666667
Q ss_pred HHHHHHHHhhCccch--hhhHHHHHHHHHHhhcC-----CChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhc
Q 005686 242 CAAFNLLIEVRPSFL--EPHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (683)
Q Consensus 242 ~~~l~~l~~~~~~~~--~~~l~~l~~~~~~~~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l 314 (683)
+.|+....-...... .+++.-++.-++-.+.. ..++.+...+..+..++..-...+.....++.++..|+.+|
T Consensus 242 I~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ym 321 (507)
T 3u0r_A 242 LQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYM 321 (507)
T ss_dssp HHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHC
Confidence 777665543322111 11222222222222221 12235666666666665542223556677888888888888
Q ss_pred ccCh
Q 005686 315 IYAD 318 (683)
Q Consensus 315 ~~~~ 318 (683)
....
T Consensus 322 P~~p 325 (507)
T 3u0r_A 322 PLPP 325 (507)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7544
No 113
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.50 E-value=0.13 Score=44.95 Aligned_cols=137 Identities=11% Similarity=0.203 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHHhh--cCCChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhh
Q 005686 236 EVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (683)
Q Consensus 236 ~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~ 313 (683)
..|..+++.|..=. -+.+.++-++.++.+.. .-.+...-...+.+..++..++. -.+.||+.+++|.++.+
T Consensus 23 ~~r~~aL~sL~~D~-----gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~--l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKES-----GLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH--VFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHCS-----SCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT--CCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----ChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHHHH
Confidence 34666666554311 12233344444443332 11245555666777788877733 35789999999998887
Q ss_pred cccChhhhhhhhhcccCCCCCccCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---cchhhh
Q 005686 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTL 390 (683)
Q Consensus 314 l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l 390 (683)
+....- . . . .+|..|++.+..++..++. .+.+.+
T Consensus 96 ll~k~l-----------------------------------~-----~--~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI 132 (196)
T 4atg_A 96 VIGKSI-----------------------------------V-----D--D-DVRKMSADIVKYIYDTYSRSYKTLAPRV 132 (196)
T ss_dssp HHCTTC-----------------------------------C-----C--H-HHHHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred HHhccc-----------------------------------C-----H--H-HHHHHHHHHHHHHHHHhCccCchHHHHH
Confidence 653210 0 0 0 5899999999999999976 445677
Q ss_pred HHHHHHHHccCCCCChhhHHHHHHHHHHHHhcc
Q 005686 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (683)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~ 423 (683)
...+.+.+.+++ .+...+++|+.++..++...
T Consensus 133 ~~tl~k~l~dp~-~~l~t~YGAi~GL~~lG~~~ 164 (196)
T 4atg_A 133 LKTLKGVWMDPN-RSEDSQYGALYCLSILSKNV 164 (196)
T ss_dssp HHHHHHHHTCTT-SCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHcCCC-CChHHHHHHHHHHHHhHHHH
Confidence 777777777653 44889999999999888743
No 114
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.48 E-value=1.4 Score=48.25 Aligned_cols=511 Identities=11% Similarity=0.067 Sum_probs=254.4
Q ss_pred ccCCHhHHHHHHHHHhhhhhc--CChHHHHHHHHHHHHHHhh--------------cCcCChHHHHHHHHHHhccCChhH
Q 005686 84 KSMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQL--------------GGIAGWLELLQALVTCLDSNDINH 147 (683)
Q Consensus 84 ~~l~~~~~~~i~~~Ll~~l~~--~~~~vr~~~~~~l~~i~~~--------------~~~~~~~~l~~~l~~~l~s~~~~~ 147 (683)
..++.+.+..+...+..++.. .+..+ ...+.++..+.+. +-.-.|..+...+...+-..+...
T Consensus 15 ~~~~~~~~~~Lv~l~Y~l~~~~g~~~~~-~~~~~~l~~Ll~~~~~~~~~~~ll~~~dL~LdWrPLy~~l~~~~~~~~~~~ 93 (799)
T 1vsy_4 15 FDFPVALRKSLATVYYYLSLVQGQKVYR-QMHVDMFERLVSLDDDRTQFTELLQKQGLLLDHQIMLNFLCEFLPYPDPDY 93 (799)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCCSSCCCH-HHHHHHHHHHSCSCBTTBCHHHHHHHTTCCCCHHHHHHHHTTTSCCSSTTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhcCcccccchhhccccccceeccHHHHHHHHHhCCCcCccc
Confidence 347788888888888886542 23333 6666777776543 134579998888876665333221
Q ss_pred -------Hh--HHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhH--
Q 005686 148 -------ME--GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF-- 216 (683)
Q Consensus 148 -------r~--~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~-- 216 (683)
+. .....+..++......+..+.+ ....+++..+...+. ++ .+..+++.+..++|....
T Consensus 94 ~~~~~~~~~~~~~~~~l~~l~~~ar~fF~~~~~----~~~~eil~e~~p~l~-p~-----s~~~~~~~l~~fLP~~~~~~ 163 (799)
T 1vsy_4 94 ARYELSSKEDLQLFRLLLKHAHNAKPFFDKSKE----SLLVDTMNFLLSSLA-PS-----TMMAVMPIVTSVVPYHYHIH 163 (799)
T ss_dssp CCCCTTSTTTHHHHHHHHHHHHHTSTTSCTTCG----GGHHHHHHHHGGGCS-TT-----THHHHHHHHHHHSCCCCCSS
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHHhcC-ch-----hHHHHHHHHHHHcCCCCCch
Confidence 22 5577777888777776662110 235777777777774 32 233344433333432111
Q ss_pred HhHHHHHHHHHhhhC--CCCHHHHHHHHHHHHHHHhhC--------------ccchhhh-------HHHHHHHHHHhhcC
Q 005686 217 VSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEVR--------------PSFLEPH-------LRNLFEYMLQVNKD 273 (683)
Q Consensus 217 ~~~~~~l~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~--------------~~~~~~~-------l~~l~~~~~~~~~~ 273 (683)
.....+++.++..-. +.+...-......+..++... .-...+| ++.|+..++..+.+
T Consensus 164 ~~~~~w~~~~f~lW~~~~~s~~wd~~~~~l~~rla~~~~~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~~ 243 (799)
T 1vsy_4 164 SKIIDYFPFCYSIWSSVSANVAIDTHMYDFVGSISKDVHNKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLRT 243 (799)
T ss_dssp CCSGGGHHHHHHHBTTBCSCHHHHHHHHHHHHHHHHHHHHHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhhhhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhccC
Confidence 111233455554322 123333344455555555431 1124566 88888777766542
Q ss_pred C--ChHHHHHHhhHHHHhhccCCchhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcccccccCCCC
Q 005686 274 T--DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGS 351 (683)
Q Consensus 274 ~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 351 (683)
. .......|- .+..... +.....+..++.+++..+-.+.--+.
T Consensus 244 ~~~~~~~~~~a~-~IV~sl~-~~~~~~~~~~L~~Li~~iesy~HPSN--------------------------------- 288 (799)
T 1vsy_4 244 DGQIHSYSRTVK-PFVYAIN-GSKKDRFFEKLVSLAKAIETFIHPSN--------------------------------- 288 (799)
T ss_dssp TCCCSSHHHHHH-HHHTTCC-TTSCTTTHHHHHHHHHHHHHHHSTTC---------------------------------
T ss_pred cCCccchHHHHH-HHHHHcC-CCCchHHHHHHHHHHHHHhcccCCCC---------------------------------
Confidence 1 111111111 1111111 11122334455555555433332111
Q ss_pred CCCCCCCccccccccH------HHHHHHHHHHHHhh-------cC----------ccchhhhHHHHHHHHccCCCCChhh
Q 005686 352 ENPEDDDDDIVNVWNL------RKCSAAALDVLSNV-------FG----------DEILPTLMPVIQAKLSASGDEAWKD 408 (683)
Q Consensus 352 ~~~~~dd~~~~~~~~~------r~~a~~~l~~l~~~-------~~----------~~~~~~l~~~l~~~l~~~~~~~~~~ 408 (683)
.+.|+. +........++.+. .+ +.++..+.|.+...+.+.+ ...
T Consensus 289 ----------~G~Wt~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~---~~~ 355 (799)
T 1vsy_4 289 ----------NGFWTKPNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKN---PDI 355 (799)
T ss_dssp ----------CSTTHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSS---HHH
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCC---cch
Confidence 012211 01111111111111 11 1223456677777777766 777
Q ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC---CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHH
Q 005686 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD---KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (683)
Q Consensus 409 r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 485 (683)
...+..++..++.-.+..-.-.++.++..+..+|+. ..+.=..+|+.++..++..+... .....++.+++..++
T Consensus 356 ~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~---~~yr~hl~~lL~l~L 432 (799)
T 1vsy_4 356 ANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMD---KLYRVHITNVLSMLV 432 (799)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTS---TTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHHh
Confidence 888888998888755511122345556666667665 34444456788888888777532 234567788888888
Q ss_pred HHhccCCccHHHHHHHHHHHHHHHhc----------------------------------------------------cc
Q 005686 486 KRILDTNKRVQEAACSAFATLEEEAA----------------------------------------------------EE 513 (683)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~----------------------------------------------------~~ 513 (683)
..++-+++.-...+...+..++...+ ..
T Consensus 433 pgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~ 512 (799)
T 1vsy_4 433 SKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTV 512 (799)
T ss_dssp HTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTST
T ss_pred ccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhh
Confidence 88776666666667777777765321 01
Q ss_pred chHHHHHHHHHHHHHHHHhhHhH-HHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHHHhc-CCCCCcc-hhhHHhH--
Q 005686 514 LAPRLEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ-LPNSDKD-LFPLLEC-- 588 (683)
Q Consensus 514 l~~~l~~i~~~L~~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~~~~~-- 588 (683)
+..++..+++.+..++++..++. ...+..++..+...+.++ .++.++.-+.+-..+ ......+ +..+ ..
T Consensus 513 f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~-----if~~~l~k~~~fv~~n~~~~a~~~v~~L-~~~~ 586 (799)
T 1vsy_4 513 FQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDK-----IFNYFASLLNRNFWSNDSFKEKDPNYEL-VTIP 586 (799)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHH-----HHHHHHHHHHHHHHSCSCCCSSSCCTHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHH
Confidence 22344455555555555322222 223444455555555443 444444444443332 2111111 1112 11
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhCCcccCCC---CCchHHHHHHHHHHHHHHHhccchHHhHHhhcCC
Q 005686 589 FTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQ---YDKEFVVCCLDLLSGLAEGLGSGIESLVISLFPN 665 (683)
Q Consensus 589 l~~l~~~~g~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~i~p~ 665 (683)
++.++++-+.. +..++|.+...+......+....+.+.+ .|.. ..--+.+++.++...|+.+-+|-..++.+
T Consensus 587 ~~a~~~~~P~~----~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~-L~w~l~iL~~~v~~~g~~lL~y~deL~~i 661 (799)
T 1vsy_4 587 LAALVRRNNGL----SKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVK-LVLYLTALNDVLRNCHESLLEYSDELITF 661 (799)
T ss_dssp HHHHHHHCGGG----HHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHH-HHHHHHHHHHHHTTTGGGGGTTHHHHHHH
T ss_pred HHHHHHhCHHH----HHHHHHHHHHHHHHHHhccccccccccccCcchHH-HHHHHHHHHHHHhcCcHHHHccHHHHHHH
Confidence 34445443332 4556666665555433211111111111 1222 23456678888888888777777776666
Q ss_pred cc
Q 005686 666 LT 667 (683)
Q Consensus 666 l~ 667 (683)
+.
T Consensus 662 l~ 663 (799)
T 1vsy_4 662 MK 663 (799)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.32 E-value=0.65 Score=42.82 Aligned_cols=188 Identities=13% Similarity=0.148 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCCh
Q 005686 66 EIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI 145 (683)
Q Consensus 66 ~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~ 145 (683)
..|.....-++..+-. -++...+.+.+.+++...+++..+|+.++..+...++.. +...+..++.|..++++.++
T Consensus 30 ~~kl~~L~qa~el~~~----~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLG----SCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTT----TTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHc----cCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCH
Confidence 3444444444443322 246677778888888767788999999999999988664 45678889999999999999
Q ss_pred hHHhHHHHHHHHHHhhchhccccCCCC--CCc---chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc--c------
Q 005686 146 NHMEGAMDALSKICEDIPQVLDSDVPG--LAE---CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM--P------ 212 (683)
Q Consensus 146 ~~r~~al~~l~~l~~~~~~~~~~~~~~--~~~---~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~--~------ 212 (683)
.+...++.+...+....-..+...-.. ..+ ..+..+=..+++.+.+.+..+|..++|.+..++... +
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~ 184 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLK 184 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCC
Confidence 998888888887776654443321000 000 112333345566677889999999999998877321 1
Q ss_pred -------------------hhhHHhHHHHHHHHHhhhCCC--CHHHHHHHHHHHHHHHhhCccchhh
Q 005686 213 -------------------SALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEP 258 (683)
Q Consensus 213 -------------------~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~ 258 (683)
..+...-..++..|+....++ +......++.+|..++...|.++..
T Consensus 185 ~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~r 251 (257)
T 3gs3_A 185 RDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGA 251 (257)
T ss_dssp CTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred CCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 001111224566666655543 3334567788888888888876543
No 116
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.94 E-value=0.54 Score=44.63 Aligned_cols=184 Identities=14% Similarity=0.195 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCH-----hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCC---hHHHH
Q 005686 62 GKSVEIRQAAGLLLKNNLRTAYKSMSP-----SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG---WLELL 133 (683)
Q Consensus 62 ~~~~~~R~~a~~~l~~~i~~~w~~l~~-----~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~---~~~l~ 133 (683)
.-+.+.|.-++.++.+.++..-..-.+ ..+..+...|+.+.. ++.+--.++.++..+++.+.-.. +.+.+
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e~la~~iL~~~~f 166 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEPLAKIILWSEQF 166 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHHHHHHHHHSGGG
T ss_pred cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhHHHHHHHhccHHH
Confidence 557788888888877776543221111 012334444444443 34455566777777766531000 01123
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccc-
Q 005686 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP- 212 (683)
Q Consensus 134 ~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~- 212 (683)
..+.+.++.++-++---|+..+..+.......... ++....+.++...-+++.+++...|..+++.|+.++..-+
T Consensus 167 ~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvae----fL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N 242 (341)
T 1upk_A 167 YDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAE----FLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN 242 (341)
T ss_dssp GHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHH----HHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHH----HHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchH
Confidence 35556788888888777888887776654332110 0112346777788888999999999999999999985421
Q ss_pred -hhhHHhH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhh
Q 005686 213 -SALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (683)
Q Consensus 213 -~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 251 (683)
..+..++ +.-+..+..++.|++..++-.++.++.-++.+
T Consensus 243 ~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 243 FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 2222232 24577788889999999999999999888764
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.87 E-value=0.37 Score=42.07 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=82.9
Q ss_pred HHHHHHhhcCc-cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC---CChhH
Q 005686 374 ALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD---KFPLI 449 (683)
Q Consensus 374 ~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d---~~~~v 449 (683)
++..+..--|= +.+|.++.++.+.+... ..++..-...+....++...-.=.+.+|+.+++|.++.++-. ....+
T Consensus 28 aL~sL~~D~gL~~LlPyf~~fI~~~v~~n-l~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~L 106 (196)
T 4atg_A 28 AIECLEKESGLQQLVPYFIQHISELILKS-FKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDV 106 (196)
T ss_dssp HHHHHHHCSSCTTTHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHH
T ss_pred HHHHHhcCCChhhhHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 44455444443 45555555555555432 123666666666667776655446789999999998887632 11279
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCc--cHHHHHHHHHHHH
Q 005686 450 RSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK--RVQEAACSAFATL 506 (683)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~--~v~~~a~~al~~l 506 (683)
|.-|+..++.++..+... ....-+.++..+.+.+.|++. ..+-.|..+|..+
T Consensus 107 Rd~AA~lL~~I~~~~~~~-----y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 107 RKMSADIVKYIYDTYSRS-----YKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHHHHHHHHTTT-----STTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc-----CchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 999999999999988642 344557788888888888653 3444555555544
No 118
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.72 E-value=0.0022 Score=59.23 Aligned_cols=83 Identities=18% Similarity=0.088 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC
Q 005686 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (683)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 444 (683)
|.+|..+... .+. +.+...+++++ |.+|.+++..+ . .+.+...++|
T Consensus 160 ~~VR~~aa~~-------l~~-------~ll~~ll~D~d---~~VR~aaa~~l-------~----------~~~L~~Ll~D 205 (244)
T 1lrv_A 160 RQVRKLVAKR-------LPE-------ESLGLMTQDPE---PEVRRIVASRL-------R----------GDDLLELLHD 205 (244)
T ss_dssp HHHHHHHHHH-------SCG-------GGGGGSTTCSS---HHHHHHHHHHC-------C----------GGGGGGGGGC
T ss_pred HHHHHHHHHc-------CCH-------HHHHHHHcCCC---HHHHHHHHHhC-------C----------HHHHHHHHcC
Confidence 5688887664 232 22335667888 99999988753 1 1457777899
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHH
Q 005686 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFA 504 (683)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~ 504 (683)
+++.||.+++..++ .+.+.. |+|+++.||..+...|+
T Consensus 206 ~d~~VR~~aa~~l~----------------------~~~L~~-L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS----------------------LEALRE-LDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC----------------------HHHHHH-CCCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC----------------------HHHHHH-ccCCCHHHHHHHHHHhC
Confidence 99999999976543 122333 48889999999887654
No 119
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=95.49 E-value=3.8 Score=44.87 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhhcC---ccchhhhHHHHHHHHcc---CCCCChhhHHHHHHHHHHHHhcch--hhhhhhHHHHHHHH
Q 005686 367 LRKCSAAALDVLSNVFG---DEILPTLMPVIQAKLSA---SGDEAWKDREAAVLALGAIAEGCI--KGLYPHLSEIVAFL 438 (683)
Q Consensus 367 ~r~~a~~~l~~l~~~~~---~~~~~~l~~~l~~~l~~---~~~~~~~~r~aal~~l~~l~~~~~--~~~~~~~~~l~~~l 438 (683)
+...+..++..++...| +-++|.++..+...+.. .+ .....+++.++..++.... +.+..|+..++..+
T Consensus 355 ~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e---~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~ 431 (799)
T 1vsy_4 355 IANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINS---RHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSML 431 (799)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTC---HHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccc---hhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 45668889999999888 88999999999988876 34 6777788888887776542 34578999999999
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHH
Q 005686 439 IPLLDDKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
++.++-+++.=-..++..+..++..++
T Consensus 432 LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 432 VSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred hccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 999987777666667777777766543
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.99 E-value=3 Score=40.90 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=122.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHH--hcCC----ChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCC
Q 005686 14 FNEICRLLEQQISPSSTADKSQIWQQLQQY--SQFP----DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (683)
Q Consensus 14 ~~~l~~~l~~~~s~~~~~~r~~A~~~L~~~--~~~p----~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~ 87 (683)
-++++++|.......++ .+-....+.+++ .++| +|++.++++.. +.+.++|.+.+-++.....+.
T Consensus 24 ~~~v~~lln~A~~~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~---d~~~~vRk~~a~FieEa~~~~----- 94 (386)
T 3o2t_A 24 SERVVDLLNQAALITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQA---DKSIEVRKFVIGFIEEACKRD----- 94 (386)
T ss_dssp HHHHHHHHHHHHHCCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGG---CSCHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhhhccChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcc---CCcHHHHHHHHHHHHHHHHHH-----
Confidence 36777777777653345 676677777773 3555 56666665433 668999999999998877542
Q ss_pred HhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-------Cc------CChHH---HHHHHHHHhccCChhHHhHH
Q 005686 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-------GI------AGWLE---LLQALVTCLDSNDINHMEGA 151 (683)
Q Consensus 88 ~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~-------~~------~~~~~---l~~~l~~~l~s~~~~~r~~a 151 (683)
.+....+...|..++.++++.|.+.+..+.+.+.+.. +. ..|.. +-..+...+.+.+..+|..+
T Consensus 95 ~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~a 174 (386)
T 3o2t_A 95 IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHA 174 (386)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 4455666677777788888888888777777765431 11 35754 45667777888899999999
Q ss_pred HHHHHHHHhhchhccc--------c-C-----CC---CCC-----cchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHH
Q 005686 152 MDALSKICEDIPQVLD--------S-D-----VP---GLA-----ECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQF 207 (683)
Q Consensus 152 l~~l~~l~~~~~~~~~--------~-~-----~~---~~~-----~~~~~~i~~~l~~~l~~~--~~~vr~~a~~~l~~~ 207 (683)
+..+..++-....... + + ++ .++ +.....++..+++.+.++ ++..-.+++.+|..+
T Consensus 175 iKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~I 254 (386)
T 3o2t_A 175 IKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANI 254 (386)
T ss_dssp HHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHH
Confidence 9999887743321100 0 0 10 011 223456777888888763 344555677777777
Q ss_pred Hhccch
Q 005686 208 IMLMPS 213 (683)
Q Consensus 208 ~~~~~~ 213 (683)
+..=|.
T Consensus 255 ak~RP~ 260 (386)
T 3o2t_A 255 ARQRPM 260 (386)
T ss_dssp HHHSGG
T ss_pred HHhcHH
Confidence 765443
No 121
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=94.84 E-value=3.3 Score=40.68 Aligned_cols=233 Identities=13% Similarity=0.120 Sum_probs=133.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCC---hH-----HHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCC
Q 005686 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPD---FN-----NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (683)
Q Consensus 17 l~~~l~~~~s~~~~~~r~~A~~~L~~~~~-~p~---~~-----~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~ 87 (683)
+.+++...-|+|.. .|......|..++. ..+ ++ ..+...+-.. ...-.+- -..-+++..+...-.-+.
T Consensus 131 i~~Ll~lfdSeDpr-ER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~-e~~~GIa-eLLeilgsIinGfa~PLk 207 (403)
T 3fga_B 131 VLQLLELFDSEDPR-ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET-EHHNGIA-ELLEILGSIINGFALPLK 207 (403)
T ss_dssp HHHHHHGGGCSCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-CCCTTHH-HHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHcCCCChH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCc-ccCCCHH-HHHHHHHHHHcccCCCch
Confidence 55677777788888 88888888877542 221 11 1122211110 1000000 112223333333222366
Q ss_pred HhHHHHHHHHHhhhhhcCC-hHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhcc
Q 005686 88 PSNQQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (683)
Q Consensus 88 ~~~~~~i~~~Ll~~l~~~~-~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~ 166 (683)
++.+..+.+.|+++-+... ...-.+++.|+...+..++ .--..++..++..---.+..-...-+.-+..+++..+..-
T Consensus 208 eehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~ 286 (403)
T 3fga_B 208 EEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE 286 (403)
T ss_dssp HHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHH
Confidence 7888888888888876543 3445688889998888763 2333445555555444454333344555666666554320
Q ss_pred ccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH--HHHhccchhhHHhHHHHHHHHHhh-hCCCCHHHHHHHHH
Q 005686 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN--QFIMLMPSALFVSMDQYLQGLFLL-SNDPSAEVRKLVCA 243 (683)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~ 243 (683)
+......++..+..++.+++..|...|+..+. .++..+.+.....++.+++.+... .++-+..++..+..
T Consensus 287 -------f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~ 359 (403)
T 3fga_B 287 -------FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYN 359 (403)
T ss_dssp -------HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 01345667777888899999999999887662 222222221222233345555543 34567889999999
Q ss_pred HHHHHHhhCccchhhhH
Q 005686 244 AFNLLIEVRPSFLEPHL 260 (683)
Q Consensus 244 ~l~~l~~~~~~~~~~~l 260 (683)
++..+.+..+..+....
T Consensus 360 vlk~l~e~d~~lF~~~~ 376 (403)
T 3fga_B 360 ALKLFMEMNQKLFDDCT 376 (403)
T ss_dssp HHHHHHTTSCCCCCTTH
T ss_pred HHHHHHHhCHHHHHHHH
Confidence 99999998887776433
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.70 E-value=4.6 Score=46.22 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=100.4
Q ss_pred CChHHHHHHHHHHHHHHhhc-------CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcch
Q 005686 105 ADRHIRSTVGTIVSVVVQLG-------GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (683)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~-------~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (683)
.++.+|..+...++.++... .....+.+...+.+.+...+...+..++.+|+.+-.
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------------- 469 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------------- 469 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------------
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------------
Confidence 56788888888888887653 122356677777778888888888899999987543
Q ss_pred hHhhHHHHHHhhc-------CCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHh
Q 005686 178 INIFLPRLLQFFQ-------SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (683)
Q Consensus 178 ~~~i~~~l~~~l~-------~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (683)
+..++.+..++. +....+|.+|+.+|..+....|+...+.+ ++.+.+ ...+.++|..|+..| +.
T Consensus 470 -p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il---~~i~~n--~~e~~EvRiaA~~~L---m~ 540 (1056)
T 1lsh_A 470 -PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIV---LPIFLN--VAIKSELRIRSCIVF---FE 540 (1056)
T ss_dssp -GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHH---HHHHHC--TTSCHHHHHHHHHHH---HH
T ss_pred -hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHH---HHHhcC--CCCChHHHHHHHHHH---HH
Confidence 223444555542 22457999999999888765443333322 333333 235678998888665 44
Q ss_pred hCccchhhhHHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 251 VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 251 ~~~~~~~~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
..|.. ..+..|... .-.+++..|+......+.++++.
T Consensus 541 t~P~~--~~l~~ia~~---l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 541 SKPSV--ALVSMVAVR---LRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp TCCCH--HHHHHHHHH---HTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HCcCH--HHHHHHHHH---HhhCchHHHHHHHHHHHHHHHhc
Confidence 44432 222333332 23456788888888889888876
No 123
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.17 E-value=4.7 Score=39.55 Aligned_cols=174 Identities=13% Similarity=0.111 Sum_probs=115.7
Q ss_pred cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHH
Q 005686 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (683)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (683)
..++.+++.+.++-.+++ ..+|.-+...+...+.. -.+++..+++.+...++|.++.|.+.++.+.+.+-...
T Consensus 59 sLl~~fl~~il~f~~d~~---~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~ 131 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKS---IEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVA 131 (386)
T ss_dssp GGGGGGHHHHHGGGGCSC---HHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCc---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 678899998888888877 88998888877766542 24567888888888899999999999888887775332
Q ss_pred Hhhh--CCC------cchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcc-------------cc---------
Q 005686 465 VQDI--GHQ------NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------------EL--------- 514 (683)
Q Consensus 465 ~~~~--~~~------~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-------------~l--------- 514 (683)
-..+ .+. .....+..+-..++..+.+.+..||..+++.+..++-.... ++
T Consensus 132 f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nH 211 (386)
T 3o2t_A 132 LQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDH 211 (386)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTC
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCC
Confidence 2111 111 12344566666777777777899999999999998843210 00
Q ss_pred --------hHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHHHhccccCchhHHHhhhHHHHHH
Q 005686 515 --------APRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (683)
Q Consensus 515 --------~~~l~~i~~~L~~~l~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 571 (683)
..-...++..|++.+.... +.....++.+++.++.. +|.|+..+++.+...
T Consensus 212 p~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~------RP~~~~rIl~aL~~l 272 (386)
T 3o2t_A 212 PYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ------RPMFMSEVIQAYETL 272 (386)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH------SGGGHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHhh
Confidence 1113456666777666432 22333555555555554 457888899877654
No 124
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.09 E-value=3.6 Score=37.90 Aligned_cols=113 Identities=4% Similarity=0.045 Sum_probs=86.0
Q ss_pred CcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHH
Q 005686 125 GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (683)
Q Consensus 125 ~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l 204 (683)
.+.-++++++.++.+..+.+..+|.-....+...+.... .....+++.+...+++.++.|.+.++.+.
T Consensus 47 dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~------------~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV------------ELLPHVINVVSMLLRDNSAQVIKRVIQAC 114 (257)
T ss_dssp TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG------------GGHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 466889999999998888888999999988888885433 34678888899999999999999988888
Q ss_pred HHHHhcc-------c------hhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 005686 205 NQFIMLM-------P------SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (683)
Q Consensus 205 ~~~~~~~-------~------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 249 (683)
..+.... | +.....+..+=..++....+.+..+|..+++.+..++
T Consensus 115 ~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 115 GSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 7665321 1 1233344445556666777788999999999888776
No 125
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=93.86 E-value=4.3 Score=40.63 Aligned_cols=225 Identities=13% Similarity=0.131 Sum_probs=126.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh-cCCChHH--------HHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhc-cC
Q 005686 17 ICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNN--------YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK-SM 86 (683)
Q Consensus 17 l~~~l~~~~s~~~~~~r~~A~~~L~~~~-~~p~~~~--------~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~-~l 86 (683)
+.++|...-|+|.. .|......|..++ +..+.-. .+...+-. .....-=--..-+++..+ +.+. .+
T Consensus 164 i~~Ll~lfdSeDpR-ERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e--~e~~nGIaeLLeilgSIi-nGfa~PL 239 (449)
T 2npp_B 164 VLQLLELFDSEDPR-ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE--TEHHNGIAELLEILGSII-NGFALPL 239 (449)
T ss_dssp HHHHHHTTTSSTHH-HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHT--CSCCSCHHHHHHHHHHHH-SSCCSSC
T ss_pred HHHHHHHcCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCHHHHHHHHHHHH-hccCCCC
Confidence 45666666678888 8888888887754 3333211 11111110 110000001112222222 2232 35
Q ss_pred CHhHHHHHHHHHhhhhhcCC-hHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhc
Q 005686 87 SPSNQQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (683)
Q Consensus 87 ~~~~~~~i~~~Ll~~l~~~~-~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~ 165 (683)
.++.+..+...|+++..... ...-.+++.|+...+..++. --..++..|+..---.+..-...-+.-+..+++..+..
T Consensus 240 Keehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~-L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ 318 (449)
T 2npp_B 240 KEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST-LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPS 318 (449)
T ss_dssp CHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHH
T ss_pred cHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH-hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHH
Confidence 67888888888888876543 34455788888888887632 23345555555444444333334455566666554432
Q ss_pred cccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH--HHHhccchhhHHhHHHHHHHHHhh-----hCCCCHHHH
Q 005686 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN--QFIMLMPSALFVSMDQYLQGLFLL-----SNDPSAEVR 238 (683)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~ 238 (683)
- +......++..+..++.+++..|...|+..+. .++..+ .++-..++|.++.. .++-+..++
T Consensus 319 e-------f~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li----~~n~~~IlPii~p~L~~~s~~HWn~~V~ 387 (449)
T 2npp_B 319 E-------FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI----SDNAAKILPIMFPSLYRNSKTHWNKTIH 387 (449)
T ss_dssp H-------HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH----HTTHHHHHHHHHHHHTSCTTCCSSTTHH
T ss_pred H-------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH----HhchhhhHHhhHHHHHHHHHHhcCHHHH
Confidence 1 01345667778888899999999999987663 222222 22223344444443 234567899
Q ss_pred HHHHHHHHHHHhhCccchh
Q 005686 239 KLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 239 ~~~~~~l~~l~~~~~~~~~ 257 (683)
..+..++..+.+..+..+.
T Consensus 388 ~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 388 GLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHH
Confidence 9999999988888776654
No 126
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.95 E-value=2.4 Score=48.45 Aligned_cols=175 Identities=15% Similarity=0.061 Sum_probs=111.3
Q ss_pred ChHHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHHHhhcc---CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhh
Q 005686 48 DFNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYKS---MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (683)
Q Consensus 48 ~~~~~l~~il~~~~-~~~~~~R~~a~~~l~~~i~~~w~~---l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~ 123 (683)
+.+..+..++.+.+ ..++.+|..|.+.+...+.+.... .+++....+.+.+.+.+...+..-+..+..+|+.+..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 45666666665321 357788998988888888765432 3556677788888888876665555666667766654
Q ss_pred cCcCChHHHHHHHHHHhcc-------CChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC--CCH
Q 005686 124 GGIAGWLELLQALVTCLDS-------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHT 194 (683)
Q Consensus 124 ~~~~~~~~l~~~l~~~l~s-------~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~ 194 (683)
|..++.+..++.. ....+|..|+.+|..+....+ ..+-+.+++.+.| .++
T Consensus 470 ------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---------------~~v~~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 470 ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---------------RKVQEIVLPIFLNVAIKS 528 (1056)
T ss_dssp ------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---------------HHHHHHHHHHHHCTTSCH
T ss_pred ------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---------------HHHHHHHHHHhcCCCCCh
Confidence 2345556565532 234678889999977765333 2345567777754 578
Q ss_pred HHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhh-CCCCHHHHHHHHHHHHHHHhhCc
Q 005686 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRP 253 (683)
Q Consensus 195 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~ 253 (683)
++|.+|+..+-.. .|. . ..+..+...+ .+++.+|+.-+...|..+.+...
T Consensus 529 EvRiaA~~~Lm~t---~P~-----~-~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 529 ELRIRSCIVFFES---KPS-----V-ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHHHHHHHT---CCC-----H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHH---CcC-----H-HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 9999998877432 221 1 1133333332 45778888888888888877643
No 127
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=92.52 E-value=7.1 Score=38.22 Aligned_cols=235 Identities=14% Similarity=0.156 Sum_probs=123.6
Q ss_pred hhhHHHHHHHHHHHHhcc---hhhhhhhHHH-HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHH
Q 005686 406 WKDREAAVLALGAIAEGC---IKGLYPHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~---~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 481 (683)
|..-..+...+..+.+.. ++...+++++ .+-.++..+++++++=|......|.++-..+.. ...++...+
T Consensus 143 WpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~------~R~~Irk~i 216 (392)
T 2jak_A 143 WPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG------LRAYIRKQI 216 (392)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 777777777766665532 2223345443 666788889999999999888888777665543 355555555
Q ss_pred HHH-HHHhccCC-ccHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhhHhH-HHHHHHHHHHHHHHhccccCc
Q 005686 482 MGL-LKRILDTN-KRVQEAACSAFATLEEEAAEELAP-RLEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVGFELNQ 557 (683)
Q Consensus 482 ~~l-~~~l~d~~-~~v~~~a~~al~~l~~~~~~~l~~-~l~~i~~~L~~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~ 557 (683)
..+ .+.+.+.. ..=....+..+++++....-.+++ +-.-+.+.|+.+.+...-.. -.....|+..++.. +
T Consensus 217 ~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK---D--- 290 (392)
T 2jak_A 217 NNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK---D--- 290 (392)
T ss_dssp HHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH---C---
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc---C---
Confidence 443 44444332 222345677788887776444433 22222333333222211111 12344555555543 2
Q ss_pred hhHHHhhhHHHHHHHhcCCCCCcchhhHHhHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHhhCCcccCCCCCchH
Q 005686 558 PVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEF 636 (683)
Q Consensus 558 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~-~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 636 (683)
|.....++..++..|-... ..+++ -.+.-+..+...++. .|.....+++..+-.++.. ....+
T Consensus 291 p~L~~~vi~~LLk~WP~tn-s~Kev-lFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S--------------~hfqV 354 (392)
T 2jak_A 291 STLTEPVVMALLKYWPKTH-SPKEV-MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS--------------PHFQV 354 (392)
T ss_dssp GGGHHHHHHHHHHSSCSSC-CTTHH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC--------------SSHHH
T ss_pred chhHHHHHHHHHHhCCCCC-chHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC--------------CcHHH
Confidence 2455556666666565432 33443 234445566666655 5666555555544444432 23457
Q ss_pred HHHHHHHHHH--HHHHhccchHHhHHhhcCCccc
Q 005686 637 VVCCLDLLSG--LAEGLGSGIESLVISLFPNLTW 668 (683)
Q Consensus 637 ~~~a~~~l~~--l~~~~~~~~~~~l~~i~p~l~~ 668 (683)
.+.|+..|.. +.....++-...+|.++|.|..
T Consensus 355 AErAL~~wnNe~i~~li~~n~~~ilPii~~~L~~ 388 (392)
T 2jak_A 355 AERALYYWNNEYIMSLISDNAAKILPIMFPSLYR 388 (392)
T ss_dssp HHHHHGGGGCHHHHHHHHHTHHHHTTTSCC----
T ss_pred HHHHHHHhCcHHHHHHHHhhhccchhhhhHHHHH
Confidence 7888888853 3333333344445555555543
No 128
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=91.88 E-value=22 Score=40.95 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=86.8
Q ss_pred hhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHH
Q 005686 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (683)
Q Consensus 426 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~ 505 (683)
.+..|++.++...-..+.+.++.||.-+......+.+.+. .-+-+.++..|+..+.+.+..-...|...|..
T Consensus 393 vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd--------~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~ 464 (1323)
T 3s4w_B 393 VLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD--------TYCQQEVVGALVTHVCSGTEAEVDTALDVLLE 464 (1323)
T ss_dssp HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC--------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc--------chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Confidence 3466778888777778888999999988877777766542 22346677888777666554445568888888
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhccc
Q 005686 506 LEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (683)
Q Consensus 506 l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (683)
+++.....+.||.. ++..++..+.+......+.++..++.++..-+..
T Consensus 465 L~~~~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~ 512 (1323)
T 3s4w_B 465 LIVLNASAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLAFSQQPG 512 (1323)
T ss_dssp HHHHCHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhcCHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 88877777777655 4556667777777777888899999888765544
No 129
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.91 E-value=5.8 Score=32.55 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcc
Q 005686 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 476 ~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (683)
.-...+..+.+.++..++.++..|+..|..++++||..+..-+ ..+++.|...+.+.+..+...+++.+.....+.+.
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3466788888889988999999999999999999987665433 34555555666555566777888888888877654
Q ss_pred c
Q 005686 554 E 554 (683)
Q Consensus 554 ~ 554 (683)
+
T Consensus 119 ~ 119 (140)
T 3ldz_A 119 D 119 (140)
T ss_dssp C
T ss_pred C
Confidence 3
No 130
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=90.55 E-value=16 Score=36.84 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHhcchhhhhhhHHH--HHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (683)
+.+-..||.=+|.++...+.+. ..+.+ .=..+...+.++++.||+.|+.|++++..
T Consensus 419 ~~~laVAc~Digefvr~~P~gr-~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 419 KIIIQVALNDITHVVELLPESI-DVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHH-HHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cceEEeecccHHHHHHHCcchh-HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6667778888888888765432 12222 34457778899999999999999998864
No 131
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=90.04 E-value=8.6 Score=36.60 Aligned_cols=150 Identities=13% Similarity=0.023 Sum_probs=86.8
Q ss_pred HHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHH-HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcch
Q 005686 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (683)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (683)
+.+.+.+ .+.+.-+++.|..+...-.....+++.. -+..++....+.+......++.+++++..+..+. ..-
T Consensus 125 ekL~~~~---~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm----~gv 197 (339)
T 3dad_A 125 EKLYSSS---GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM----LGV 197 (339)
T ss_dssp HHHHHCC---HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH----HHH
T ss_pred HHHhcCC---cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc----cch
Confidence 3444455 6777788888887443222222233322 4555666666668888888999999987764332 000
Q ss_pred hhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHH-----------HHHHHHHHHHH---hhHhHHHHH
Q 005686 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI-----------ILQHLMMAFGK---YQRRNLRIV 540 (683)
Q Consensus 475 ~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~-----------i~~~L~~~l~~---~~~~~~~~~ 540 (683)
--...++..++..+.+....|...|+..|..+++.......-.... ..+.++..++. .+.+.+..+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 1135677778877777677888889999988888763222111111 12344555542 222334466
Q ss_pred HHHHHHHHHHhc
Q 005686 541 YDAIGTLADAVG 552 (683)
Q Consensus 541 ~~~l~~l~~~~~ 552 (683)
+..|..+...++
T Consensus 278 mtLIN~lL~~ap 289 (339)
T 3dad_A 278 VTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHhcCC
Confidence 666666666544
No 132
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.53 E-value=3.6 Score=35.19 Aligned_cols=77 Identities=13% Similarity=0.001 Sum_probs=56.7
Q ss_pred HHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhh-HHHHHHHHHHHhcc------CCccHHHHHHHHHH
Q 005686 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRILD------TNKRVQEAACSAFA 504 (683)
Q Consensus 432 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~l~~~l~d------~~~~v~~~a~~al~ 504 (683)
...+..+.+.+++.++.|...|+..|..+.+.++.. .+.++ -..++..|.+.+.. .+..|+..++..|.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~----Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR----FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH----HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 345778888999999999999999999999987642 11111 14456666666652 24789999999999
Q ss_pred HHHHHhcc
Q 005686 505 TLEEEAAE 512 (683)
Q Consensus 505 ~l~~~~~~ 512 (683)
.....++.
T Consensus 125 ~W~~~f~~ 132 (171)
T 1juq_A 125 SWTMALPE 132 (171)
T ss_dssp HHHHHCTT
T ss_pred HHHHHcCC
Confidence 98887754
No 133
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=89.01 E-value=18 Score=35.47 Aligned_cols=266 Identities=12% Similarity=0.084 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHHHHHHhc---cchhhHHhHH-HHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCcc---chhhhHHHHH
Q 005686 192 PHTSLRKLSLGSVNQFIML---MPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS---FLEPHLRNLF 264 (683)
Q Consensus 192 ~~~~vr~~a~~~l~~~~~~---~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~l~~l~ 264 (683)
+++.-...+.+.+..++.. .|.....+++ .++..|+.+++++|+.-|...-..|..+-..... .+...+..++
T Consensus 96 ~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif 175 (403)
T 3fga_B 96 AAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 175 (403)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3444444555555555543 1222233333 3677788888999999988888777776655432 2333333332
Q ss_pred HHHHHhhcCCChHHHHHHhhHHHHhhccCC--chhhHHhhhhhhHHHHHhhcccChhhhhhhhhcccCCCCCccCCCCcc
Q 005686 265 EYMLQVNKDTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (683)
Q Consensus 265 ~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~l~~~l~~~~~d~~~~~~~~~e~~~~~~~~~~~~ 342 (683)
--.+...... . -....+++++++.+... ..+.-+.++ ..++++...... +
T Consensus 176 ~~fiye~e~~-~-GIaeLLeilgsIinGfa~PLkeehk~fl---~~vLlPLHk~~~--------------------~--- 227 (403)
T 3fga_B 176 YRFIYETEHH-N-GIAELLEILGSIINGFALPLKEEHKIFL---LKVLLPLHKVKS--------------------L--- 227 (403)
T ss_dssp HHHHHTTCCC-T-THHHHHHHHHHHHHHCCSSCCHHHHHHH---HHTTTGGGGSTT--------------------G---
T ss_pred HHHhcCcccC-C-CHHHHHHHHHHHHcccCCCchHHHHHHH---HHHHHHHHcCCc--------------------c---
Confidence 2211111111 1 12356777777766521 111111121 122222221100 0
Q ss_pred cccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhc
Q 005686 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (683)
Q Consensus 343 ~~~~~~~~~~~~~~dd~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~ 422 (683)
. ....-...|+..+.+.-+ .....++..+..+.-..+ ...-..-+.-+..+.+.
T Consensus 228 --------------------~--~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tn---s~KevlFL~Ele~iLe~ 281 (403)
T 3fga_B 228 --------------------S--VYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTH---SPKEVMFLNELEEILDV 281 (403)
T ss_dssp --------------------G--GTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSSC---HHHHHHHHHHHHHHHTT
T ss_pred --------------------h--hhHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHHHHh
Confidence 0 011123334444443333 223344444444443333 33333444455666666
Q ss_pred c-hhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHH--HHHHHHhhhCCCcchhhHHHHHHHHHHHhcc-CCccHHHH
Q 005686 423 C-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR--FSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEA 498 (683)
Q Consensus 423 ~-~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~v~~~ 498 (683)
. +..+.+....++..+..++.++|..|-.+|+..... +...+.. .....++-+++.+.+.... -+..|+..
T Consensus 282 ~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~-----n~~~IlPii~p~L~~~~~~HWn~~v~~l 356 (403)
T 3fga_B 282 IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD-----NAAKILPIMFPSLYRNSKTHWNKTIHGL 356 (403)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT-----THHHHHHHHHHHHHHTTSCCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5 456677778889999999999999999888755422 1222211 2234445555556554443 37889999
Q ss_pred HHHHHHHHHHHhcccchH
Q 005686 499 ACSAFATLEEEAAEELAP 516 (683)
Q Consensus 499 a~~al~~l~~~~~~~l~~ 516 (683)
+..++..+.+.-...+..
T Consensus 357 ~~~vlk~l~e~d~~lF~~ 374 (403)
T 3fga_B 357 IYNALKLFMEMNQKLFDD 374 (403)
T ss_dssp HHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHhCHHHHHH
Confidence 999999877655544443
No 134
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=87.64 E-value=19 Score=34.07 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccCChhHHh-HHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHH----hhcC---CCHHHHHHHH
Q 005686 130 LELLQALVTCLDSNDINHME-GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ----FFQS---PHTSLRKLSL 201 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~-~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~----~l~~---~~~~vr~~a~ 201 (683)
|.++..++.-.+++.+..|. ..+.++..++...+..+.+. ++.++..+++ ..+. .-|+.|..=.
T Consensus 72 ppLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~--------vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff 143 (321)
T 1w9c_A 72 PPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAE--------IPQIFDAVFECTLNMINKDFEEYPEHRTNFF 143 (321)
T ss_dssp HHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGG--------HHHHHHHHHHHHHHHHSSTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHhcccccChHHHHHHH
Confidence 44444444434455666776 45677888888888765532 4455554443 3443 5789999988
Q ss_pred HHHHHHHhccchhhH----HhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc-------cchhhhHHHHHHHHHHh
Q 005686 202 GSVNQFIMLMPSALF----VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-------SFLEPHLRNLFEYMLQV 270 (683)
Q Consensus 202 ~~l~~~~~~~~~~~~----~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~l~~l~~~~~~~ 270 (683)
+.+..+....-+.+. +.+..++..+....++++.++....+..+..+..... .+...|.-.++.-++..
T Consensus 144 ~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~V 223 (321)
T 1w9c_A 144 LLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSV 223 (321)
T ss_dssp HHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 888888766443322 3455678888888899999999999988877765432 23334555666666666
Q ss_pred hcCCC----hHHHHHHhhHHHHhhcc
Q 005686 271 NKDTD----DDVALEACEFWHSYFEA 292 (683)
Q Consensus 271 ~~~~~----~~vr~~a~~~l~~l~~~ 292 (683)
+.|.+ -......+.-+..+++.
T Consensus 224 lTDs~Hk~gF~~q~~iL~~lf~~ve~ 249 (321)
T 1w9c_A 224 VTDTSHTAGLTMHASILAYMFNLVEE 249 (321)
T ss_dssp HHSSSCCTTHHHHHHHHHHHHHHHHT
T ss_pred HhCchhhccHHHHHHHHHHHHHHHHc
Confidence 65542 23333444445555443
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=86.11 E-value=5.5 Score=33.70 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=69.0
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhH
Q 005686 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (683)
Q Consensus 103 ~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~ 182 (683)
.++++..-..+|..+.. . +..-.+.+..|.+-+++.++++...|+.+|..+++.++..+..++. -..++
T Consensus 29 ~~~Dw~~~leicD~I~~----~-~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~eva------s~~Fl 97 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGS----T-PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVC------SRDFA 97 (163)
T ss_dssp SSCCHHHHHHHHHHHHH----S-SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHT------SHHHH
T ss_pred CCcCHHHHHHHHHHHhC----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh------hHHHH
Confidence 34566554444443332 2 2334567788888889999999999999999999999886643321 14556
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHHhccc
Q 005686 183 PRLLQFFQS-PHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 183 ~~l~~~l~~-~~~~vr~~a~~~l~~~~~~~~ 212 (683)
..+...+.. .++.|+..++..+..+....+
T Consensus 98 ~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 98 TEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 666666554 678999999999988876543
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.08 E-value=2.5 Score=35.09 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC------CCHHHHHHHHHH
Q 005686 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLGS 203 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~------~~~~vr~~a~~~ 203 (683)
.+.+..|.+-+++.++.+...|+.+|..+++.++..+..++. ...++..+...+.. ++..|+..++..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 110 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVA------KFRFLNELIKVLSPKYLGSWATGKVKGRVIEI 110 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHT------SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh------hHHHHHHHHHHHccccCCCCCCHHHHHHHHHH
Confidence 556777888888999999999999999999999987643321 25677778877763 478999999999
Q ss_pred HHHHHhccc
Q 005686 204 VNQFIMLMP 212 (683)
Q Consensus 204 l~~~~~~~~ 212 (683)
+..+....+
T Consensus 111 i~~W~~~f~ 119 (148)
T 1mhq_A 111 LFSWTVWFP 119 (148)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHcC
Confidence 999886654
No 137
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=85.99 E-value=24 Score=33.55 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=90.9
Q ss_pred HHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccch--hh
Q 005686 138 TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS--AL 215 (683)
Q Consensus 138 ~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~--~~ 215 (683)
+.+.+++...+..++.-|..+...-..+.. + -...+=+..++....+.+......++.+|..++.+... .+
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~-E------FI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVP-E------FVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHH-H------HHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHH-H------HHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 334456667777788888775543221110 0 01123356677777888999999999999999887432 11
Q ss_pred HHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh---hhHHH--------HHHHHHHhhc---CCChHHHHH
Q 005686 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE---PHLRN--------LFEYMLQVNK---DTDDDVALE 281 (683)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~l~~--------l~~~~~~~~~---~~~~~vr~~ 281 (683)
.. -+.++..+..+....+..+.+.+++.|..++...+.... .-+.. .+..++..++ ..+.++..+
T Consensus 198 vs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 198 VA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 11 235677777777777788999999999888876543221 11110 1223334444 467888888
Q ss_pred HhhHHHHhhcc
Q 005686 282 ACEFWHSYFEA 292 (683)
Q Consensus 282 a~~~l~~l~~~ 292 (683)
|+..+..+...
T Consensus 277 amtLIN~lL~~ 287 (339)
T 3dad_A 277 TVTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88887776544
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.90 E-value=2.7 Score=34.99 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcC------CCHHHHHHHH
Q 005686 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSL 201 (683)
Q Consensus 128 ~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~------~~~~vr~~a~ 201 (683)
.=.+.+..|..-+++.++++...++.+|..+++.++..+..++. ...++..+...+.+ ++..|+..++
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eia------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil 118 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVG------KFRFLNELIKVVSPKYLGSRTSEKVKNKIL 118 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHT------SHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHh------hHHHHHHHHHHHcccccCCCCCHHHHHHHH
Confidence 34566788888888999999999999999999999987643321 25667777777753 5789999999
Q ss_pred HHHHHHHhccc
Q 005686 202 GSVNQFIMLMP 212 (683)
Q Consensus 202 ~~l~~~~~~~~ 212 (683)
..+..+....+
T Consensus 119 ~li~~W~~~f~ 129 (149)
T 3g2s_A 119 ELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHhC
Confidence 99999986654
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.78 E-value=3.9 Score=34.97 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=69.3
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHH
Q 005686 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (683)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (683)
+++...-..+|..+.. . +..-.+.+..|.+-+++.++.+...|+.+|..+++.++..+..++. ...++.
T Consensus 28 ~~Dw~~ileicD~I~~----~-~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~eva------s~~Fl~ 96 (171)
T 1juq_A 28 QEDWEYIIGFCDQINK----E-LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVG------KFRFLN 96 (171)
T ss_dssp SCCHHHHHHHHHHHHH----S-TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHT------SHHHHH
T ss_pred CcCHHHHHHHHHHHHc----C-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh------hHHHHH
Confidence 4555554444433332 1 2233566788888889999999999999999999999987653322 256677
Q ss_pred HHHHhhc------CCCHHHHHHHHHHHHHHHhccc
Q 005686 184 RLLQFFQ------SPHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 184 ~l~~~l~------~~~~~vr~~a~~~l~~~~~~~~ 212 (683)
.+...+. ..+..||..++..+..+....+
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 7777765 2468999999999999987654
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.06 E-value=15 Score=30.39 Aligned_cols=78 Identities=8% Similarity=-0.003 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHH------hhHhHHHHHHHHHHHH
Q 005686 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTL 547 (683)
Q Consensus 476 ~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~------~~~~~~~~~~~~l~~l 547 (683)
.-...+..|.+.++..++.++..|+..|...+++||..+..-+ ..+++.|.+.+.. ....+...+++.|...
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 3456788888889989999999999999999999987664322 3455556666643 2345667888888888
Q ss_pred HHHhcc
Q 005686 548 ADAVGF 553 (683)
Q Consensus 548 ~~~~~~ 553 (683)
....+.
T Consensus 125 ~~~f~~ 130 (149)
T 3g2s_A 125 TVGLPE 130 (149)
T ss_dssp HHHCTT
T ss_pred HHHhCC
Confidence 887643
No 141
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=84.40 E-value=23 Score=31.96 Aligned_cols=160 Identities=9% Similarity=-0.004 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCC-ChH-HHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHH
Q 005686 32 DKSQIWQQLQQYSQFP-DFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHI 109 (683)
Q Consensus 32 ~r~~A~~~L~~~~~~p-~~~-~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~v 109 (683)
.|+-|-+........+ .-+ ..+..+.. +...+.|.+|+.+++. ....++++....+... +. .-.+..+
T Consensus 43 lR~laK~~~k~~~~~~~~~~~~~~~~L~~---~~~~E~r~~ai~~l~~----~~k~~~~~~l~~~~~~-l~--~~~nWd~ 112 (232)
T 3jxy_A 43 RRQLLKDIIQIHTLPDQKDFQIIIRELWD---LPEREFQAAALDIMQK----YKKHINETHIPFLEEL-IV--TKSWWDS 112 (232)
T ss_dssp HHHHHHHHHHHHCCCCGGGHHHHHHHHHT---SSBHHHHHHHHHHHHH----TGGGCCGGGHHHHHHH-HT--SSCCHHH
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHhc---CcHHHHHHHHHHHHHH----HHHhCCHHHHHHHHHH-Hc--cCCChHH
Confidence 4444444444443321 123 34444443 4456789888888752 2344666666666543 22 2456766
Q ss_pred HHHH-HHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHh
Q 005686 110 RSTV-GTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (683)
Q Consensus 110 r~~~-~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 188 (683)
.-.+ ..+++.+++..+.. +.+.+...+.|++.-.|..|+..+.. . .. . .....+++.+...
T Consensus 113 ~D~~a~~~~g~~~~~~p~~----~~~~l~~W~~s~~~w~rR~ai~~~l~---~-~~--~--------~d~~~~~~~i~~~ 174 (232)
T 3jxy_A 113 VDSIVPTFLGDIFLKHPEL----ISAYIPKWIASDNIWLQRAAILFQLK---Y-KQ--K--------MDEELLFWIIGQL 174 (232)
T ss_dssp HHHHTTTHHHHHHHHCGGG----GGGTHHHHHHSSCHHHHHHHHHTTTT---C-GG--G--------CCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHCHHH----HHHHHHHHhcCCchHHHHHHHHHHHH---H-Hh--C--------CCHHHHHHHHHHh
Confidence 6555 46777777764221 34567788899999888888766511 1 11 1 1235566777788
Q ss_pred hcCCCHHHHHHHHHHHHHHHhccchhhHHhH
Q 005686 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (683)
Q Consensus 189 l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 219 (683)
+.|++.-|+.+.-.+|..+....|+.+.+++
T Consensus 175 ~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl 205 (232)
T 3jxy_A 175 HSSKEFFIQKAIGWVLREYAKTNPDVVWEYV 205 (232)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 8999999999999999999877666555544
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.59 E-value=8.4 Score=32.55 Aligned_cols=78 Identities=6% Similarity=0.041 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHhcc
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~-~~~~~~~~~~~~l~~l~~~~~~ 553 (683)
-...+..|.+.|+..++.++..|+..|..++++|+..+...+ ..+++.|..++.. .+..+...+++.|.......+.
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 356777888888888999999999999999999987665322 2355555555553 3445666888888888777664
Q ss_pred c
Q 005686 554 E 554 (683)
Q Consensus 554 ~ 554 (683)
.
T Consensus 130 ~ 130 (163)
T 1x5b_A 130 D 130 (163)
T ss_dssp C
T ss_pred C
Confidence 3
No 143
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=81.83 E-value=18 Score=29.63 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhh------hhHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 005686 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY------PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (683)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (683)
...+..+.+.+.+.+ +.+..-|+..+..+...|+..+. .+++.+.. .+...++.|+..+...+..++
T Consensus 41 k~a~rai~Krl~~~n---~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~----l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKD---PHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSN----VLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH----HhccCCHHHHHHHHHHHHHHH
Confidence 367778888888877 88888889999999888865443 34444433 333468899999999999999
Q ss_pred HHHHh
Q 005686 462 KFIVQ 466 (683)
Q Consensus 462 ~~~~~ 466 (683)
..++.
T Consensus 114 ~~f~~ 118 (140)
T 3ldz_A 114 DEFKN 118 (140)
T ss_dssp HHHTT
T ss_pred HHhCC
Confidence 88764
No 144
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=79.74 E-value=54 Score=33.00 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHH--HHHHHHHHhccCCccHHHHHHHHHHHHHH
Q 005686 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK--VLMGLLKRILDTNKRVQEAACSAFATLEE 508 (683)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (683)
.++.+-..||.=+|.++++.+. ....+.. .=..+++.+.++++.||-.|+.|+..++.
T Consensus 417 ~d~~~laVAc~Digefvr~~P~------gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPE------SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT------HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcc------hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4688888999999999998763 3333333 34556778888899999999999998764
No 145
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=78.61 E-value=46 Score=31.54 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=70.0
Q ss_pred HHHHccCCCCChhhHHHHHHHHHHHHhcchhhh----hhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhh--h
Q 005686 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKGL----YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD--I 468 (683)
Q Consensus 395 ~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~ 468 (683)
.+.++.+-.+.++.|..-...+..+...|...+ .+.+..++..++=++++++..|-..++..+-.+.+.+... .
T Consensus 125 L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~ 204 (321)
T 1w9c_A 125 LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAA 204 (321)
T ss_dssp HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHH
Confidence 344544334459999999999999998875433 2456677888888899999999999999988887776521 1
Q ss_pred CCCcchhhHHHHHHHHHHHhccCC
Q 005686 469 GHQNGREQFEKVLMGLLKRILDTN 492 (683)
Q Consensus 469 ~~~~~~~~~~~~l~~l~~~l~d~~ 492 (683)
..+....|+-.++..++..+.|+.
T Consensus 205 ~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 205 AQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCch
Confidence 111235667777778888888764
No 146
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=77.98 E-value=25 Score=32.91 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHhccC------ChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhH---hhHHHHHHhhcCCCHHHH
Q 005686 127 AGWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN---IFLPRLLQFFQSPHTSLR 197 (683)
Q Consensus 127 ~~~~~l~~~l~~~l~s~------~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~---~i~~~l~~~l~~~~~~vr 197 (683)
..+..=+..+...++++ +......++..|..+...+...+ +... .++..+. +.....+.+|
T Consensus 18 yeFs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~---------KI~~~ef~lL~nL~-~~~~~~~~~r 87 (315)
T 3qml_C 18 YEFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGY---------KIITHEFALLANLS-LNENLPLTLR 87 (315)
T ss_dssp CTTHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHH---------HHHHHHHHHHHHHH-HCTTSCHHHH
T ss_pred cchHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhh---------HHHhCcHHHHHHHH-hhccCChhHH
Confidence 34444455555555554 44455666666655554433211 1111 2223333 3344567899
Q ss_pred HHHHHHHHHHHhccchhhHH---hHHHHHHHHHhh----hCC---CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHH
Q 005686 198 KLSLGSVNQFIMLMPSALFV---SMDQYLQGLFLL----SND---PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYM 267 (683)
Q Consensus 198 ~~a~~~l~~~~~~~~~~~~~---~~~~~l~~l~~~----~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~l~~~~ 267 (683)
..|..+++......|+.+.. ..+.++..++.. ... ....+.+..+.++..|+.....+-...+..|...+
T Consensus 88 E~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly 167 (315)
T 3qml_C 88 ELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVY 167 (315)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHH
Confidence 99999999999998865442 223344444432 221 23456777888888888775433222334444443
Q ss_pred HHhhcCCChHHHHHHhhHHHHhh
Q 005686 268 LQVNKDTDDDVALEACEFWHSYF 290 (683)
Q Consensus 268 ~~~~~~~~~~vr~~a~~~l~~l~ 290 (683)
- .. ..+..++..+++++..+-
T Consensus 168 ~-~~-~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 168 E-RN-NKDKQLQIKVLELISKIL 188 (315)
T ss_dssp H-HT-TTCHHHHHHHHHHHHHHH
T ss_pred c-cC-CCCHHHHHHHHHHHHHHc
Confidence 2 22 447778888887766553
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.98 E-value=19 Score=32.36 Aligned_cols=98 Identities=8% Similarity=0.098 Sum_probs=67.8
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhH
Q 005686 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (683)
Q Consensus 103 ~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~ 182 (683)
.+++...--.++..+. .. +..-.+.+..|.+-+++.++++...|+.+|..+++.++..+..++. ...++
T Consensus 22 ~~~dw~~ileicD~I~----~~-~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eia------s~~fl 90 (226)
T 3zyq_A 22 LETDWESILQICDLIR----QG-DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVA------NKQTM 90 (226)
T ss_dssp SSCCHHHHHHHHHHHH----TT-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHS------SHHHH
T ss_pred CCcCHHHHHHHHHHHh----CC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhc------cHHHH
Confidence 3456655544554443 22 3344778888999999999999999999999999999886543221 13444
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHHhcc
Q 005686 183 PRLLQFFQ-SPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 183 ~~l~~~l~-~~~~~vr~~a~~~l~~~~~~~ 211 (683)
..+...+. .++..|+..++..+..+....
T Consensus 91 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 91 EELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 45544443 367899999999998887654
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.72 E-value=17 Score=30.02 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=56.9
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhH--HHHHHHHHhhhCC------CCHHHHHHHHHHHHHHHh
Q 005686 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND------PSAEVRKLVCAAFNLLIE 250 (683)
Q Consensus 179 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~------~~~~~~~~~~~~l~~l~~ 250 (683)
...+..+..-+++.++.+...|+..+..++...+..+...+ ..+++.+..++.+ .+..|+..++..+.....
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34455667778899999999999999999998877665544 3678888777653 367899998888877766
Q ss_pred hCc
Q 005686 251 VRP 253 (683)
Q Consensus 251 ~~~ 253 (683)
.++
T Consensus 117 ~f~ 119 (148)
T 1mhq_A 117 WFP 119 (148)
T ss_dssp HCT
T ss_pred HcC
Confidence 554
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.41 E-value=31 Score=30.98 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHhcc
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~~-~~~~~~~~~~~l~~l~~~~~~ 553 (683)
-...+..|.+.|+..++.++..|+..|..++++||..+..-+ ..+++.|..+++.. ...+...+++.|.....+.+.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 366788888889989999999999999999999987553321 23334444444432 335566788888877776654
Q ss_pred c
Q 005686 554 E 554 (683)
Q Consensus 554 ~ 554 (683)
+
T Consensus 123 ~ 123 (226)
T 3zyq_A 123 E 123 (226)
T ss_dssp C
T ss_pred C
Confidence 3
No 150
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=74.46 E-value=74 Score=31.83 Aligned_cols=205 Identities=15% Similarity=0.217 Sum_probs=104.2
Q ss_pred hhccCCHhHHHHHHHHHhhhhh---cCChHHHHHHHHHHHHHHhh-cCcCChHHHHHHHHHHhccCC----hhHHhHHHH
Q 005686 82 AYKSMSPSNQQYIKSELLPCLG---AADRHIRSTVGTIVSVVVQL-GGIAGWLELLQALVTCLDSND----INHMEGAMD 153 (683)
Q Consensus 82 ~w~~l~~~~~~~i~~~Ll~~l~---~~~~~vr~~~~~~l~~i~~~-~~~~~~~~l~~~l~~~l~s~~----~~~r~~al~ 153 (683)
..++-++..|+.++..|-...+ .-.+.+|+++..++...+-. +..+...+++..+...+++-. ...+..-..
T Consensus 170 lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~ 249 (449)
T 2npp_B 170 LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLK 249 (449)
T ss_dssp TTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 3556678888888876655554 34567788777766666543 345666777777766665532 222222222
Q ss_pred HHHHHHhhchhccccCCCCC-------C---cchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccch-hhHHhHHHH
Q 005686 154 ALSKICEDIPQVLDSDVPGL-------A---ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQY 222 (683)
Q Consensus 154 ~l~~l~~~~~~~~~~~~~~~-------~---~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~ 222 (683)
+|--+.+. ..+....+.+ + ......++..++..---+++.=...-+.-+..+++.+++ .+...+..+
T Consensus 250 vLlPLhk~--~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~l 327 (449)
T 2npp_B 250 VLLPLHKV--KSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPL 327 (449)
T ss_dssp TTGGGGGS--SCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcc--chhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22111110 0000000000 0 011122223333332233433334445555566665543 444555667
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHH--HHhhCccchhhhHHHHHHHHHH----hhcCC-ChHHHHHHhhHHHHhhcc
Q 005686 223 LQGLFLLSNDPSAEVRKLVCAAFNL--LIEVRPSFLEPHLRNLFEYMLQ----VNKDT-DDDVALEACEFWHSYFEA 292 (683)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~l~~--l~~~~~~~~~~~l~~l~~~~~~----~~~~~-~~~vr~~a~~~l~~l~~~ 292 (683)
+..+...+++++..|.+.|+..|.. ++. .+..+...+++.+.. ..+.. +..+|..|..++..+.+.
T Consensus 328 F~~la~ci~S~hfqVAErAL~~w~N~~i~~----li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 328 FRQLAKCVSSPHFQVAERALYYWNNEYIMS----LISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp HHHHHHHHTCSCHHHHHHHHGGGGCHHHHH----HHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCHHHHH----HHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 7777778888889999988876531 111 122233334444433 33333 566888888887776654
No 151
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=74.20 E-value=50 Score=29.73 Aligned_cols=154 Identities=9% Similarity=0.023 Sum_probs=90.0
Q ss_pred hhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc-cCChhHHhHH-HHHHHHHHhhchhccccCCCCCCcch
Q 005686 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGA-MDALSKICEDIPQVLDSDVPGLAECP 177 (683)
Q Consensus 100 ~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~-s~~~~~r~~a-l~~l~~l~~~~~~~~~~~~~~~~~~~ 177 (683)
.+..++....|..+...+....+...+... +.+...+. -+++.+.... -.+++.++...++
T Consensus 68 ~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l----~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~------------- 130 (232)
T 3jxy_A 68 ELWDLPEREFQAAALDIMQKYKKHINETHI----PFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE------------- 130 (232)
T ss_dssp HHHTSSBHHHHHHHHHHHHHTGGGCCGGGH----HHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-------------
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-------------
Confidence 344555566776666665533332222222 23333332 3566654443 3455666554332
Q ss_pred hHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccchh
Q 005686 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (683)
Q Consensus 178 ~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 257 (683)
...+.+.....+++.-+|..|+..+.... .......++..+.....|++.-+++.+...|..+....++.+.
T Consensus 131 --~~~~~l~~W~~s~~~w~rR~ai~~~l~~~------~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 131 --LISAYIPKWIASDNIWLQRAAILFQLKYK------QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp --GGGGTHHHHHHSSCHHHHHHHHHTTTTCG------GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHHH------hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 13345678889999999988876652221 1112233455555667888899999999999999999888877
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHhhHHH
Q 005686 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (683)
Q Consensus 258 ~~l~~l~~~~~~~~~~~~~~vr~~a~~~l~ 287 (683)
+++.. ..-++-+...|++-+.
T Consensus 203 ~fl~~---------~~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 203 EYVQN---------NELAPLSKREAIKHIK 223 (232)
T ss_dssp HHHHH---------SCCCHHHHHHHTTTTH
T ss_pred HHHHH---------CCCCHHHHHHHHHhcc
Confidence 66642 1234445666665443
No 152
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=73.62 E-value=25 Score=29.39 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=66.0
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhc-cCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhH
Q 005686 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (683)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~-s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~ 182 (683)
+++...--.+|..+. .. +..-.+.+..|.+-++ +.++.+...|+.+|..+++.++..+..++. -..++
T Consensus 31 ~~Dw~~~leicD~I~----~~-~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva------~~~fl 99 (157)
T 1elk_A 31 SEDWALNMEICDIIN----ET-EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVA------SQDFV 99 (157)
T ss_dssp SCCHHHHHHHHHHHH----HS-SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHT------SHHHH
T ss_pred CcCHHHHHHHHHHHh----CC-CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHh------hHHHH
Confidence 456555444444333 22 2344667788888887 578999999999999999999887653321 24566
Q ss_pred HH-HHHhhc---CCCHHHHHHHHHHHHHHHhcc
Q 005686 183 PR-LLQFFQ---SPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 183 ~~-l~~~l~---~~~~~vr~~a~~~l~~~~~~~ 211 (683)
.. +...+. ++...||..++..+..+....
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 65 555553 345789999999998887643
No 153
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=73.39 E-value=50 Score=29.41 Aligned_cols=158 Identities=12% Similarity=-0.007 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCCC--hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHhhhhh-cCChH
Q 005686 32 DKSQIWQQLQQYSQFPD--FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRH 108 (683)
Q Consensus 32 ~r~~A~~~L~~~~~~p~--~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~-~~~~~ 108 (683)
.|+-|-+........|. -+..+..+.. +..-+.|..|+.++...- ..+.++....+. ..+. -.+..
T Consensus 37 lR~laK~~~k~~~~~~~~~~~~~~~~L~~---s~~~E~r~la~~~l~~~~----~~~~~~~l~~~~----~~l~~~~nWd 105 (220)
T 2b6c_A 37 RQALSKQLLKESHTWPKEKLCQEIEAYYQ---KTEREYQYVAIDLALQNV----QRFSLEEVVAFK----AYVPQKAWWD 105 (220)
T ss_dssp HHHHTHHHHHHHTTSCHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHTG----GGCCHHHHHHGG----GGTTTTCSHH
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHc---CchhHHHHHHHHHHHHHH----hhCCHHHHHHHH----HHhccCCcHH
Confidence 56666665544322231 2334444443 456889999998886432 223443322222 2232 35677
Q ss_pred HHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHh
Q 005686 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (683)
Q Consensus 109 vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 188 (683)
+.-..|.+++.++...+ ..+.+.+...+.|++.-+|..|+..+. .. .. . .....+++.+...
T Consensus 106 ~~D~~a~~~~~~~~~~~----~~~~~~i~~W~~s~~~w~rR~ai~~~l---~~-~~---~-------~~~~~~~~i~~~~ 167 (220)
T 2b6c_A 106 SVDAWRKFFGSWVALHL----TELPTIFALFYGAENFWNRRVALNLQL---ML-KE---K-------TNQDLLKKAIIYD 167 (220)
T ss_dssp HHHHHHHHHHHHHHHSG----GGHHHHHHHHTTCSSHHHHHHHHHTTT---TC-GG---G-------CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCh----HHHHHHHHHHHcCCCHHHHHHHHHHHH---HH-HH---C-------CCHHHHHHHHHHh
Confidence 77777777777776532 125567888999999988888877552 11 11 0 1235667767778
Q ss_pred hcCCCHHHHHHHHHHHHHHHhccchhhHHh
Q 005686 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVS 218 (683)
Q Consensus 189 l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 218 (683)
+.|++.-|+.+.-..|..+....|+...++
T Consensus 168 ~~d~~~yV~kavgW~Lr~~~k~~~~~v~~f 197 (220)
T 2b6c_A 168 RTTEEFFIQKAIGWSLRQYSKTNPQWVEEL 197 (220)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 999999999999999999887765544443
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.67 E-value=19 Score=32.28 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=65.8
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHH
Q 005686 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (683)
Q Consensus 104 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (683)
+++...-..++..+. . .+..-.+.+..|.+-+++.++.+...|+.+|..+++.++..+..++. -..++.
T Consensus 20 ~~dw~~~leicd~i~----~-~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva------~~~fl~ 88 (220)
T 1dvp_A 20 EPDWPSILLICDEIN----Q-KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVF------TKENCE 88 (220)
T ss_dssp SCCHHHHHHHHHHHH----T-TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHS------SHHHHH
T ss_pred CcCHHHHHHHHHhhc----C-CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHH------hHHHHH
Confidence 456655444443332 2 23345677888888899999999999999999999999876543221 134555
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHHhcc
Q 005686 184 RLLQFFQ-SPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 184 ~l~~~l~-~~~~~vr~~a~~~l~~~~~~~ 211 (683)
.+...+. .++..|+..++..+..+....
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 89 MFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 5555554 357889999888888876543
No 155
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=71.72 E-value=59 Score=29.53 Aligned_cols=161 Identities=13% Similarity=0.159 Sum_probs=88.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhhccCCHhHHHH
Q 005686 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (683)
Q Consensus 15 ~~l~~~l~~~~s~~~~~~r~~A~~~L~~~~~-~p~~~~~l~~il~~~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~ 93 (683)
+++.+.+..+.+|+ .|..|...|.+-.+ .|+..+.|++-... -+. |-+.|-..|+.+++..
T Consensus 3 ~~i~qli~~L~~p~---~Re~AL~eLsk~Re~~~~La~~LW~S~Gt-----------ia~-LLQEIisiYp~lspp~--- 64 (268)
T 2fv2_A 3 EKIYQWINELSSPE---TRENALLELSKKRESVPDLAPMLWHSFGT-----------IAA-LLQEIVNIYPSINPPT--- 64 (268)
T ss_dssp HHHHHHHHHTSSTT---THHHHHHHHHHHTTTCTTHHHHHHHSTTH-----------HHH-HHHHHHHTGGGBTTBC---
T ss_pred HHHHHHHHHhcCch---hHHHHHHHHHHhhhccccHHHHHHhccCH-----------HHH-HHHHHHHHcccCCCcc---
Confidence 45677777887777 78888877776443 57777777764331 222 3344445555554421
Q ss_pred HHHHHhhhhhcCChHHHHHHHHHHH---HHHhhc------CcCChHHHHHHHHHHhccCC--hhHHhHHHHHHHHHHhhc
Q 005686 94 IKSELLPCLGAADRHIRSTVGTIVS---VVVQLG------GIAGWLELLQALVTCLDSND--INHMEGAMDALSKICEDI 162 (683)
Q Consensus 94 i~~~Ll~~l~~~~~~vr~~~~~~l~---~i~~~~------~~~~~~~l~~~l~~~l~s~~--~~~r~~al~~l~~l~~~~ 162 (683)
| ....-+.++.+++ .+|.+. -....|-++-.++...+... ...|.+++-+++.+++.-
T Consensus 65 --------L---t~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~d 133 (268)
T 2fv2_A 65 --------L---TAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTD 133 (268)
T ss_dssp --------C---CHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGC
T ss_pred --------c---CHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccC
Confidence 1 1111222222222 223221 01223333222222222222 357888999999988764
Q ss_pred hhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 005686 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (683)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~ 210 (683)
..+.... -.-.+++|.++..+..++.--+.-|.-++..+...
T Consensus 134 d~eVi~f------LL~tEiiplCLrime~GselSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 134 EQEVINF------LLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 175 (268)
T ss_dssp CHHHHHH------HHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHH------HHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhcc
Confidence 4322110 01256889999999999888888888888877643
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.51 E-value=33 Score=30.61 Aligned_cols=77 Identities=6% Similarity=0.024 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHhcc
Q 005686 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 477 ~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l--~~i~~~L~~~l~~~-~~~~~~~~~~~l~~l~~~~~~ 553 (683)
-...+..|.+.|+..++.++..|+..|..++++||..+...+ ..+++.|..++++. ...+...+++.+.....+.+.
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 456777888888888999999999999999999986654321 12444444445443 234555777777777766553
No 157
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=69.17 E-value=37 Score=27.61 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHhhHHHHhhcc
Q 005686 260 LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 260 l~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 292 (683)
...+++++++.+++.++.++..|+.+|..++.+
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 467899999999999999999999999999876
No 158
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=67.64 E-value=67 Score=28.55 Aligned_cols=139 Identities=11% Similarity=0.039 Sum_probs=89.5
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhcc-CChhHHhHHHHHHHHHHhhchhccccCCCCCCc
Q 005686 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (683)
Q Consensus 97 ~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 175 (683)
.+..+..++....|..++.++....+.. .++-++.+...+.. +++.+......+++.++...+
T Consensus 59 ~~~~L~~s~~~E~r~la~~~l~~~~~~~----~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~------------ 122 (220)
T 2b6c_A 59 EIEAYYQKTEREYQYVAIDLALQNVQRF----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL------------ 122 (220)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHTGGGC----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG------------
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHhhC----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh------------
Confidence 3334455566777777777776544321 24555555555643 566665554455666555433
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCccc
Q 005686 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (683)
Q Consensus 176 ~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 255 (683)
..+.+.+.....+++.-+|..|+.++.. +.. ......+++.+-....|++.-+++.+...|..+....++.
T Consensus 123 ---~~~~~~i~~W~~s~~~w~rR~ai~~~l~---~~~---~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 123 ---TELPTIFALFYGAENFWNRRVALNLQLM---LKE---KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ---GGHHHHHHHHTTCSSHHHHHHHHHTTTT---CGG---GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHH---HHH---CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 2345668889999999999888775522 211 1223444666665778888999999999999999988887
Q ss_pred hhhhH
Q 005686 256 LEPHL 260 (683)
Q Consensus 256 ~~~~l 260 (683)
+.+++
T Consensus 194 v~~fl 198 (220)
T 2b6c_A 194 VEELM 198 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 159
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=67.54 E-value=21 Score=29.06 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=47.7
Q ss_pred cchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC-----C------CChhHHHHH
Q 005686 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-----D------KFPLIRSIS 453 (683)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-----d------~~~~vr~~a 453 (683)
..+..+++.+.+.+.+.. |.++.-|+.+|-.++..-.+.+...+..=...|..+.+ | ....||..|
T Consensus 45 ~~~~eim~~L~kRL~~k~---~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~A 121 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKS---PIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETA 121 (140)
T ss_dssp HHHHHHHHHHHHHHTSSS---HHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCC---cceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHH
Confidence 556789999999999887 99999999999998865554443333322222222221 2 126888888
Q ss_pred HHHHHHH
Q 005686 454 CWTLSRF 460 (683)
Q Consensus 454 ~~~l~~l 460 (683)
-.++.-+
T Consensus 122 kEl~~ll 128 (140)
T 1vdy_A 122 HETISAI 128 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 160
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=67.09 E-value=86 Score=29.56 Aligned_cols=99 Identities=13% Similarity=-0.007 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHHHhcch--hhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHH
Q 005686 406 WKDREAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (683)
Q Consensus 406 ~~~r~aal~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 483 (683)
+..+..+++++..+..... ..+..+..++++.+...+.+++..+|.++...+-.++-..... ...+-..+++..
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~----~~~~~~~~ll~~ 237 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD----HNIEGKAQCLSL 237 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS----CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc----CCchHHHHHHHH
Confidence 5667777777777766542 2234566788888888888889999999988888888776542 111223344454
Q ss_pred HHHHhcc-CCccHHHHHHHHHHHHHH
Q 005686 484 LLKRILD-TNKRVQEAACSAFATLEE 508 (683)
Q Consensus 484 l~~~l~d-~~~~v~~~a~~al~~l~~ 508 (683)
+...+.. .+++..-.++.||+.++.
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 4444442 356667777777777764
No 161
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=64.69 E-value=52 Score=26.46 Aligned_cols=73 Identities=5% Similarity=0.066 Sum_probs=49.2
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcc
Q 005686 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (683)
Q Consensus 433 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (683)
+.+...+..|+...+.+...+.|++.. ..+...++..+.+.+....+.-|...+..+..++.+++.
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~--------------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~ 72 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHH--------------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKR 72 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHT--------------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHh
Confidence 345556667777777788777776643 234456666677777766677789999999999998854
Q ss_pred cchHHHH
Q 005686 513 ELAPRLE 519 (683)
Q Consensus 513 ~l~~~l~ 519 (683)
.-.+|..
T Consensus 73 ~~~~y~~ 79 (135)
T 4fu3_A 73 KGPEFTR 79 (135)
T ss_dssp TCSHHHH
T ss_pred cCHHHHH
Confidence 3333433
No 162
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=62.27 E-value=63 Score=26.49 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=51.7
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhccc---
Q 005686 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE--- 513 (683)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~--- 513 (683)
..+..|.+..+.+-...+..|+.++.. ...+...++..+.+.+....+.-+..+++.+..++++++..
T Consensus 9 ~~L~~L~~~k~~~S~~~I~~LT~~a~~---------~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~ 79 (145)
T 3d9j_A 9 SELYSLNDYKPPISKAKMTQITKAAIK---------AIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQ 79 (145)
T ss_dssp HHHHGGGGSCSSCCHHHHHHHHHHHHH---------TGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCC
Confidence 344455443322333444555555542 23455777777877777777889999999999999998652
Q ss_pred -chHHHHHHHHHHHHHH
Q 005686 514 -LAPRLEIILQHLMMAF 529 (683)
Q Consensus 514 -l~~~l~~i~~~L~~~l 529 (683)
..+|.+.+.+.|...+
T Consensus 80 ~~~~f~~~F~~~L~~~f 96 (145)
T 3d9j_A 80 EKDVFAPRFSNNIISTF 96 (145)
T ss_dssp TTCSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 2256555544444433
No 163
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=59.84 E-value=71 Score=26.14 Aligned_cols=77 Identities=9% Similarity=0.034 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 005686 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (683)
Q Consensus 127 ~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~ 206 (683)
..-..+...+.+.+....+..+..++.++..+++.++..+... ....+.+.+.......+...|....+.+..
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~-------F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~ 111 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIY-------FSRNLFNLYKRTYLLVDNTTRTKLINMFKL 111 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHH-------HHTTHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHH-------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788888888888889999999999999999887654321 223444555566666788999999999998
Q ss_pred HHhc
Q 005686 207 FIML 210 (683)
Q Consensus 207 ~~~~ 210 (683)
+-+.
T Consensus 112 W~~~ 115 (144)
T 1sz9_A 112 WLNP 115 (144)
T ss_dssp HTSG
T ss_pred HhCc
Confidence 8755
No 164
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=59.62 E-value=66 Score=25.74 Aligned_cols=68 Identities=7% Similarity=0.151 Sum_probs=48.2
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHh
Q 005686 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (683)
Q Consensus 431 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (683)
++..+...+..|+.....+...+.|++.. ..+-..++..+.+.+....+.-|...+..+..++.++
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h--------------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIEN--------------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHT--------------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 34456666777777777777777666543 2344566777777777777788899999999999988
Q ss_pred cc
Q 005686 511 AE 512 (683)
Q Consensus 511 ~~ 512 (683)
+.
T Consensus 72 ~~ 73 (132)
T 4flb_A 72 KR 73 (132)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 165
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=59.44 E-value=76 Score=26.39 Aligned_cols=76 Identities=7% Similarity=0.170 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHcc-CCCCChhhHHHHHHHHHHHHhcchhhhhhhH--HHHHHH-Hhhcc---CCCChhHHHHHHHHHHHH
Q 005686 388 PTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAF-LIPLL---DDKFPLIRSISCWTLSRF 460 (683)
Q Consensus 388 ~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~--~~l~~~-l~~~l---~d~~~~vr~~a~~~l~~l 460 (683)
...+..+.+.+++ .+ +.+..-|+..+..+...|+..+...+ ...+.. ++..+ .+++..||..++..+..+
T Consensus 52 k~a~ral~krl~~~~n---~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 52 KDALRAVKKRIVGNKN---FHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 3567778888864 66 88889999999999998876553222 113333 33333 245578999999999999
Q ss_pred HHHHHh
Q 005686 461 SKFIVQ 466 (683)
Q Consensus 461 ~~~~~~ 466 (683)
+..+..
T Consensus 129 ~~~f~~ 134 (157)
T 1elk_A 129 ADAFRS 134 (157)
T ss_dssp HHHHTT
T ss_pred HHHcCC
Confidence 988763
No 166
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=55.88 E-value=77 Score=25.33 Aligned_cols=90 Identities=9% Similarity=0.046 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcccc
Q 005686 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (683)
Q Consensus 476 ~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (683)
+++..+...+..|+.+...++..+.+++.. ..+.+.|++.+.+.+.+.........+-.+..++..++...
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h---------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~ 75 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIEN---------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKN 75 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHT---------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccC
Confidence 345555666666766555566666666543 14567777777777776654445577788888888876543
Q ss_pred CchhHHHhhhHHHHHHHhcC
Q 005686 556 NQPVYLDILMPPLIAKWQQL 575 (683)
Q Consensus 556 ~~~~~~~~~~~~l~~~~~~~ 575 (683)
. ..|...+-+.+...+...
T Consensus 76 ~-~~f~~~f~~~l~~~~~~~ 94 (132)
T 4flb_A 76 A-IIFRESFADVLPEAAALV 94 (132)
T ss_dssp C-THHHHHHHTTHHHHHHTT
T ss_pred h-HHHHHHHHHHHHHHHHHh
Confidence 2 235454555555555544
No 167
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=55.83 E-value=1.1e+02 Score=28.50 Aligned_cols=94 Identities=10% Similarity=0.124 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHHHHHhhcCc------CChHHHHHHHHHHhc----cC---ChhHHhHHHHHHHHHHhhchhccccCCC
Q 005686 105 ADRHIRSTVGTIVSVVVQLGGI------AGWLELLQALVTCLD----SN---DINHMEGAMDALSKICEDIPQVLDSDVP 171 (683)
Q Consensus 105 ~~~~vr~~~~~~l~~i~~~~~~------~~~~~l~~~l~~~l~----s~---~~~~r~~al~~l~~l~~~~~~~~~~~~~ 171 (683)
.++.+|..++.+|+...+..++ ..||.++..++..+. ++ .......-+.++..+++.... +..
T Consensus 82 ~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~-F~~--- 157 (315)
T 3qml_C 82 LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED-LPI--- 157 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT-C-----
T ss_pred CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh-hhh---
Confidence 3455666677777666665422 246666655554432 22 223444445555555554311 111
Q ss_pred CCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 005686 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (683)
Q Consensus 172 ~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~ 208 (683)
..+.. +..++... ..++.++..++..+..+.
T Consensus 158 ----~~m~~-L~~ly~~~-~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 158 ----YSTVV-LQNVYERN-NKDKQLQIKVLELISKIL 188 (315)
T ss_dssp ----CCHHH-HHHHHHHT-TTCHHHHHHHHHHHHHHH
T ss_pred ----ccHHH-HHHHHccC-CCCHHHHHHHHHHHHHHc
Confidence 11222 22233322 447888888888887665
No 168
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=53.60 E-value=1e+02 Score=28.01 Aligned_cols=100 Identities=10% Similarity=0.125 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHHHhccchhhHHhH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhC---------ccchhhhHH
Q 005686 193 HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR---------PSFLEPHLR 261 (683)
Q Consensus 193 ~~~vr~~a~~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~---------~~~~~~~l~ 261 (683)
.+.+|..++..++.++....+++..++ .+++|..+..+..+++-.+.-+.-.+.++.... ++.+. .+.
T Consensus 115 fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~-av~ 193 (268)
T 2fv2_A 115 FEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFS-HVA 193 (268)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHH
T ss_pred chhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHH-HHH
Confidence 458999999999999977655555443 256787777776666655555555554443321 12222 222
Q ss_pred HHHHHHH-HhhcCCChHHHHHHhhHHHHhhccC
Q 005686 262 NLFEYML-QVNKDTDDDVALEACEFWHSYFEAQ 293 (683)
Q Consensus 262 ~l~~~~~-~~~~~~~~~vr~~a~~~l~~l~~~~ 293 (683)
.++.-++ ...++++..+-...+.+...+++++
T Consensus 194 ~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 194 MILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 3333333 3345566766677777777777763
No 169
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=53.06 E-value=53 Score=29.63 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=49.6
Q ss_pred hhHHHHHHHHccCCCCChhhHHHHHHHHH-HHHhcchhhh-hhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHH
Q 005686 389 TLMPVIQAKLSASGDEAWKDREAAVLALG-AIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (683)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~-~l~~~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (683)
...+.+.+...|++ .-.|.+|+.+-+ -++....+.. ..+++.++..+...+.|++..|+.+..|+|..++...+
T Consensus 108 ~~~~~~~~W~~s~~---~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 108 IAQDVADKWIASGD---ELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp SHHHHHHHHHHSCC---HHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHcCcH---HHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 45667777888876 444555555221 1122222221 35677788888889999999999999999999987643
No 170
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=49.99 E-value=1.1e+02 Score=27.54 Aligned_cols=76 Identities=13% Similarity=0.000 Sum_probs=55.3
Q ss_pred HhcCCChHHHHHHHhhhccCCCHHHHHHHHH----HHHHHHHHhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHH
Q 005686 43 YSQFPDFNNYLAFILARAEGKSVEIRQAAGL----LLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVS 118 (683)
Q Consensus 43 ~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~----~l~~~i~~~w~~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~ 118 (683)
+.+.|.....+...+. +.+.-.|.+|.+ ++.+ .....++......+...+-..+.+++..|+.+++-+|.
T Consensus 103 ~~~~~~~~~~~~~W~~---s~~~w~rR~ai~~q~~ll~~---~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr 176 (235)
T 1t06_A 103 LSESNIAQDVADKWIA---SGDELKMSAGWSCYCWLLGN---RKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLN 176 (235)
T ss_dssp HTTSSSHHHHHHHHHH---SCCHHHHHHHHHHHHHHHHH---SCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHc---CcHHHHHHHHHHHHHHHHhh---ccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 3456676666666655 678888888887 4443 12234566777777777777888999999999999999
Q ss_pred HHHhhc
Q 005686 119 VVVQLG 124 (683)
Q Consensus 119 ~i~~~~ 124 (683)
.+++.+
T Consensus 177 ~~gk~~ 182 (235)
T 1t06_A 177 TVAISY 182 (235)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 999874
No 171
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=49.68 E-value=1.1e+02 Score=25.08 Aligned_cols=43 Identities=9% Similarity=-0.009 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchH
Q 005686 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (683)
Q Consensus 474 ~~~~~~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~ 516 (683)
..+-..++..+.+.+....+.-+..++..+.+++++++..+.+
T Consensus 38 ~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~ 80 (144)
T 1sz9_A 38 ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTI 80 (144)
T ss_dssp GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHH
T ss_pred HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHH
Confidence 3456777788888887778889999999999999999865443
No 172
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=44.74 E-value=1.2e+02 Score=24.27 Aligned_cols=66 Identities=9% Similarity=-0.027 Sum_probs=42.2
Q ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhcc
Q 005686 479 KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (683)
Q Consensus 479 ~~l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (683)
..+...+..|+.+...++..+.+++... .+.+.|++.+...+........-..+-.+..++..+..
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~~---------~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~ 72 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHHR---------KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKR 72 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHTG---------GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHh
Confidence 3444555666666677777777776531 45667777777777765444444677788888777643
No 173
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=38.44 E-value=1.4e+02 Score=24.62 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhcc-CCccHHHHHHHHHHHHHHHhcccchHHHH--HHHHH-HHHHHHHh---hHhHHHHHHHHHHHHH
Q 005686 476 QFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLE--IILQH-LMMAFGKY---QRRNLRIVYDAIGTLA 548 (683)
Q Consensus 476 ~~~~~l~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~l~~~l~--~i~~~-L~~~l~~~---~~~~~~~~~~~l~~l~ 548 (683)
.-...+..|.+.++. .++.++..|+..|...+++||..+...+. .++.. |.+.+... ...+...+++.|....
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 346678888888874 47788888999999999999876644332 34432 34444322 1245667777777777
Q ss_pred HHhcc
Q 005686 549 DAVGF 553 (683)
Q Consensus 549 ~~~~~ 553 (683)
.+.+.
T Consensus 130 ~~F~~ 134 (152)
T 3rru_A 130 QGFPG 134 (152)
T ss_dssp TCCSS
T ss_pred HHhCC
Confidence 66544
No 174
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=38.21 E-value=2.9e+02 Score=26.93 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=39.5
Q ss_pred hccCCHhHHHHHHHHHhhhhh---cCChHHHHHHHHHHHHHHhh-cCcCChHHHHHHHHHHhccC
Q 005686 83 YKSMSPSNQQYIKSELLPCLG---AADRHIRSTVGTIVSVVVQL-GGIAGWLELLQALVTCLDSN 143 (683)
Q Consensus 83 w~~l~~~~~~~i~~~Ll~~l~---~~~~~vr~~~~~~l~~i~~~-~~~~~~~~l~~~l~~~l~s~ 143 (683)
.++-++..|+.++..|-...+ .-.+.+|+++...+...+-. +......+++..+...+++-
T Consensus 183 fdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 183 FDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 456678888888876655543 34566778777776666643 24456667777666666543
No 175
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=36.49 E-value=61 Score=26.81 Aligned_cols=99 Identities=10% Similarity=0.140 Sum_probs=62.8
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhcc-CChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhh
Q 005686 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (683)
Q Consensus 103 ~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i 181 (683)
.+++...--.+|..+.. . +..-.+.+..|.+-+.. .++.+...|+.+|..+++.++..+..++. ...+
T Consensus 30 ~~~Dw~~ileicD~In~----~-~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eia------sk~F 98 (152)
T 3rru_A 30 QTEDWGQFMHICDIINT----T-QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIV------KKEF 98 (152)
T ss_dssp CSCCHHHHHHHHHHHHH----S-TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHS------SHHH
T ss_pred CCccHHHHHHHHHHHhC----C-CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHH------hhHh
Confidence 34555544444444332 1 23345667777777774 57777788999999999999986643221 1334
Q ss_pred HHH-HHHhhcC---CCHHHHHHHHHHHHHHHhccc
Q 005686 182 LPR-LLQFFQS---PHTSLRKLSLGSVNQFIMLMP 212 (683)
Q Consensus 182 ~~~-l~~~l~~---~~~~vr~~a~~~l~~~~~~~~ 212 (683)
+.. +...+.. ....|+..++..+..+....+
T Consensus 99 l~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 99 VKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 433 3444443 345899999999999987654
No 176
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=34.00 E-value=1.9e+02 Score=23.53 Aligned_cols=89 Identities=8% Similarity=-0.013 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchh-------hhhhhHHHHHHHHhhcc
Q 005686 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-------GLYPHLSEIVAFLIPLL 442 (683)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l 442 (683)
...+.|..++.... .....++..+.+.+.... +..|-.+++.+.+++..... .+.+.+...++.++...
T Consensus 24 ~~I~~LT~~a~~~~-~~~~~IV~~~~~~i~k~~---~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~ 99 (145)
T 3d9j_A 24 AKMTQITKAAIKAI-KFYKHVVQSVEKFIQKCK---PEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL 99 (145)
T ss_dssp HHHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC---ccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHH
Confidence 34445555554332 233467777777777666 88999999999999988765 34444433333222222
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 005686 443 DDKFPLIRSISCWTLSRFSK 462 (683)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~ 462 (683)
....+..|......+..+-+
T Consensus 100 ~~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 100 YRCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp TSSCGGGHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhcC
Confidence 23347788777777766653
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=29.80 E-value=2.7e+02 Score=27.13 Aligned_cols=59 Identities=7% Similarity=0.026 Sum_probs=41.6
Q ss_pred ChhHHhHHHHHHHHHHhhchhc--cccCCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhcc
Q 005686 144 DINHMEGAMDALSKICEDIPQV--LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (683)
Q Consensus 144 ~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~a~~~l~~~~~~~ 211 (683)
+.......+.||..++..-... +.. .+..+..+..++.++.+.+|..+++.|..++.+.
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~---------~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLE---------TEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHT---------CSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHc---------ChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 3455667788888876543221 111 1345778888899999999999999999888664
No 178
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=27.24 E-value=2.4e+02 Score=22.58 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=70.4
Q ss_pred cCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCChHHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchh
Q 005686 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (683)
Q Consensus 85 ~l~~~~~~~i~~~Ll~~l~~~~~~vr~~~~~~l~~i~~~~~~~~~~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~ 164 (683)
.+..+....+...|+..|.+.+..+...++..+.... ..++|.+.+.++++|..= -..++..++...+.
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~--------~~l~p~I~~vl~s~D~~W---~ywil~~lv~~~~~ 91 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ--------SIAMPHILTILQGNDIMW---KYWVIKLMIPYLIY 91 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH--------HHHHHHHHHHHHSSCHHH---HHHHHHHHGGGCCH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc--------HhhHHHHHHHHHcCChHH---HHHHHHHHHHcCCH
Confidence 4667777778889999999999999888777777543 467888888888777532 23344444554443
Q ss_pred ccccCCCCCCcchhHhhHHHHHHhhcCC-----CHHHHHHHHHHHHHHH
Q 005686 165 VLDSDVPGLAECPINIFLPRLLQFFQSP-----HTSLRKLSLGSVNQFI 208 (683)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~l~~~l~~~-----~~~vr~~a~~~l~~~~ 208 (683)
. ....+.+.+.....++ ..++...|-+.|..+.
T Consensus 92 ~-----------~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~ 129 (134)
T 3ut4_A 92 P-----------NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFYY 129 (134)
T ss_dssp H-----------HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC
T ss_pred H-----------HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHc
Confidence 2 2466777777777765 3467777777776653
No 179
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=26.61 E-value=4.3e+02 Score=25.69 Aligned_cols=100 Identities=9% Similarity=0.019 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHHhccchhhHHh--HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHhhCc-cc-hhhhHHHH----
Q 005686 192 PHTSLRKLSLGSVNQFIMLMPSALFVS--MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SF-LEPHLRNL---- 263 (683)
Q Consensus 192 ~~~~vr~~a~~~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~-~~~~l~~l---- 263 (683)
.+......+++|+..++..-. .+... -+..+..+...+..+.+.++..+++.|..++.... .- ....+..+
T Consensus 132 ~d~~~q~~~l~CLkalmN~~~-G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~ 210 (383)
T 3eg5_B 132 YDSRNQHEIIRCLKAFMNNKF-GIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 210 (383)
T ss_dssp -CHHHHHHHHHHHHHHTSSHH-HHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchh-hHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHH
Confidence 345777888899988876521 11111 12346777777788888999999999988876542 21 11111111
Q ss_pred -------HHHHHHhhcC-CChHHHHHHhhHHHHhhcc
Q 005686 264 -------FEYMLQVNKD-TDDDVALEACEFWHSYFEA 292 (683)
Q Consensus 264 -------~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~ 292 (683)
+..++..+.+ .+.+.+..++.++..+...
T Consensus 211 ~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~ 247 (383)
T 3eg5_B 211 EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 247 (383)
T ss_dssp HHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence 2223344443 4566777777777777665
No 180
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=25.41 E-value=2.9e+02 Score=23.02 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHhh
Q 005686 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (683)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (683)
..+-+.+.+++.+.+ -..++.++..+.. + .+.+.++..++..--|.+..-|..+...|..+.. ..
T Consensus 11 kk~~~ii~EYf~~~D------~~Ea~~~l~eL~~--p----~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~---~~ 75 (165)
T 2rg8_A 11 KTLTPIIQEYFEHGD------TNEVAEMLRDLNL--G----EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG---TV 75 (165)
T ss_dssp HHHHHHHHHHHHHCC------HHHHHHHHHHHTC--S----GGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT---TT
T ss_pred HHHHHHHHHHHcCCC------HHHHHHHHHHhCC--c----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---CC
Confidence 355667788888766 3555666665542 2 1333344444443335677788888888887743 11
Q ss_pred hCCCcchhhHHHHHHHHHHHhccC---CccHHHHHHHHHHHH
Q 005686 468 IGHQNGREQFEKVLMGLLKRILDT---NKRVQEAACSAFATL 506 (683)
Q Consensus 468 ~~~~~~~~~~~~~l~~l~~~l~d~---~~~v~~~a~~al~~l 506 (683)
.....+..-+..++..+.|- .|.+.......++..
T Consensus 76 ----ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiara 113 (165)
T 2rg8_A 76 ----MSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARA 113 (165)
T ss_dssp ----BCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHH
Confidence 23334444444555555431 355555444444443
No 181
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.40 E-value=4.5e+02 Score=25.28 Aligned_cols=133 Identities=10% Similarity=0.062 Sum_probs=76.0
Q ss_pred cccHHHHHHHHHHHHHhhcCccchhhhHHHHHHHHccCCCCChhhHHHHHHHHHHHHhcch--hhhh-hh--HHHHHHHH
Q 005686 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--KGLY-PH--LSEIVAFL 438 (683)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~l~~~~~--~~~~-~~--~~~l~~~l 438 (683)
.|..|-.+.+.+..+....+. ...+..++...+.+.. +..+..+++++..+..+.. ..+. .. ...++..+
T Consensus 176 ~Wp~~FP~LDLLRl~v~~~~~--~~~l~~li~~~~~~~~---~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i 250 (362)
T 3l3f_X 176 NWEIKTPAYDIVRLIVKKLPY--SSDIKDYIEEGLGNKN---ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 250 (362)
T ss_dssp HCSCCHHHHHHHHHHGGGCSC--GGGGHHHHHHHTTCSS---HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred hCCccchHHHHHHHHhcCCCh--HHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHH
Confidence 355566677777766665543 2234445555554444 7888888888888766532 2222 11 33455555
Q ss_pred hhccC----CCChhHHHHHHHHHHHHHHHHHhhhCCCcchhhHHHHHHHHHHHhc---------cCCccHHHHHHHHHHH
Q 005686 439 IPLLD----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL---------DTNKRVQEAACSAFAT 505 (683)
Q Consensus 439 ~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~---------d~~~~v~~~a~~al~~ 505 (683)
...+. ..+..+|-++...+=.++-..... ... ..++..+...+. ..+++..-.++-|++.
T Consensus 251 ~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~----~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGt 323 (362)
T 3l3f_X 251 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG----NSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGN 323 (362)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHT----CSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc----cch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHH
Confidence 44442 235678888877777777765432 011 122233333333 2366777788888888
Q ss_pred HHH
Q 005686 506 LEE 508 (683)
Q Consensus 506 l~~ 508 (683)
++.
T Consensus 324 L~~ 326 (362)
T 3l3f_X 324 LAT 326 (362)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 182
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=20.98 E-value=7.2e+02 Score=25.88 Aligned_cols=115 Identities=15% Similarity=0.069 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHHhhchhccccCCCCCCcchhHhhHHHHHHh-hcCCCHHHHHHHHHHHHHHH
Q 005686 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF-FQSPHTSLRKLSLGSVNQFI 208 (683)
Q Consensus 130 ~~l~~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~vr~~a~~~l~~~~ 208 (683)
+.-+..+..++++....+...++..+..+.......-.++. .+-......+.+.+... ..+++..+|..|+.++..++
T Consensus 316 ~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~-~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I 394 (596)
T 4f52_E 316 QFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQ-YLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYI 394 (596)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGG-GGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChh-hhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHH
Confidence 44456677778888888888899988888777654321110 00001123344444443 34689999999999999999
Q ss_pred hccchhhHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHh
Q 005686 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (683)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 250 (683)
...|..- .+ .++..+++.. ..+.++..++..+..-+.
T Consensus 395 ~~~~~e~-R~--~iL~~LL~~~--~~~~v~~~lI~~~KdeI~ 431 (596)
T 4f52_E 395 NKLDSQG-KY--TLFRCLLNTS--NHSGVEAFIIQNIKNQID 431 (596)
T ss_dssp HHBCHHH-HH--HHHHHHHHHH--CCHHHHHHHHHHHHHHHH
T ss_pred HhCChHH-HH--HHHHHHHhcC--CChHHHHHHHHHHHHHHH
Confidence 7766442 11 2355555433 356777777777765443
Done!